Citrus Sinensis ID: 000156
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2015 | 2.2.26 [Sep-21-2011] | |||||||
| Q94FN2 | 1978 | Protein MOR1 OS=Arabidops | yes | no | 0.975 | 0.993 | 0.759 | 0.0 | |
| Q5N749 | 1997 | Protein MOR1 OS=Oryza sat | yes | no | 0.981 | 0.989 | 0.722 | 0.0 | |
| Q14008 | 2032 | Cytoskeleton-associated p | yes | no | 0.690 | 0.685 | 0.306 | 1e-177 | |
| A2AGT5 | 2032 | Cytoskeleton-associated p | yes | no | 0.695 | 0.689 | 0.298 | 1e-171 | |
| Q1ZXQ8 | 2013 | Centrosomal protein 224 O | yes | no | 0.482 | 0.483 | 0.265 | 1e-95 | |
| O94534 | 809 | Spindle pole body compone | yes | no | 0.249 | 0.621 | 0.283 | 6e-47 | |
| Q09933 | 882 | Phosphoprotein p93 OS=Sch | no | no | 0.236 | 0.539 | 0.247 | 2e-31 | |
| P46675 | 888 | Protein STU2 OS=Saccharom | yes | no | 0.319 | 0.724 | 0.251 | 8e-30 | |
| G5EEM5 | 1415 | Zygote defective protein | yes | no | 0.110 | 0.156 | 0.288 | 3e-17 | |
| Q2UCC9 | 1184 | Protein stu1 OS=Aspergill | no | no | 0.144 | 0.246 | 0.226 | 0.0002 |
| >sp|Q94FN2|MOR1_ARATH Protein MOR1 OS=Arabidopsis thaliana GN=MOR1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 3055 bits (7921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1534/2020 (75%), Positives = 1731/2020 (85%), Gaps = 54/2020 (2%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +A AS K G KKDGS + E SK E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK +K+ KS SNG K GNR SR +PTKG+ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1615
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1616 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1675
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1676 DLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1735
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT TIG
Sbjct: 1736 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIG 1795
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1796 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1855
Query: 1855 LGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENP 1914
L + SP+ LS + + MN +S+ YT+D R AS + P
Sbjct: 1856 LALPSPDIPSLSSLDVKPL-----MNPRSD--------LYTDDIR-----ASNMNP---- 1893
Query: 1915 LSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQSR 1974
V +GTLDAIRERMK+MQLA++ +P ++PL+ NDN++ ++ QS
Sbjct: 1894 -----------GVMTGTLDAIRERMKNMQLASS----EPVSKPLMPTNDNLS--MNQQSV 1936
Query: 1975 SSDRASVEN-PAQGSVLPMDEKALSGLQARMERLKSGTIE 2013
+ E VLPMDEKALSGLQARMERLK G++E
Sbjct: 1937 PPSQMGQETVHTHPVVLPMDEKALSGLQARMERLKGGSLE 1976
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Microtubule-binding protein that is essential for cortical microtubules organization and function. Essential for maintaining the interphase cortical array and for correct morphogenesis. Promotes rapid growth and shrinkage of microtubules and suppresses the pausing of interphase microtubules. Regulates the structure and function of microtubule arrays during mitosis and cytokinesis. Probably not required for cellulose microfibrils alignment in roots. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5N749|MOR1_ORYSJ Protein MOR1 OS=Oryza sativa subsp. japonica GN=MOR1 PE=2 SV=1 | Back alignment and function description |
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Score = 2880 bits (7467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1468/2032 (72%), Positives = 1714/2032 (84%), Gaps = 55/2032 (2%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE GPLFKKTV
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFKKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDAL+A+ +AADADA RYAKEVCDAI AKCLTGRPKTVEKAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALLAFQRAADADASRYAKEVCDAIVAKCLTGRPKTVEKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEA +VFL+ MEKA+KNKVAKAVVPAIDVMFQALSEFGAK++PPK+ILKMLPELFDH D
Sbjct: 123 ELEAAEVFLESMEKAVKNKVAKAVVPAIDVMFQALSEFGAKVVPPKKILKMLPELFDHPD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRASSKGLTLELCRWIGK+PVK ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASSKGLTLELCRWIGKEPVKAILFEKMRDTMKKELEAELANVSGIAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
+KEL +E++ E G SEE+ + P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 EKELEEEVVPEAAGTNNSEEAVPEAPMEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
R+DAVAELTKLASTK+IAPGDF E+CRTLKKLITDVN+AV+VEA QAIGNLA+GLRTHFS
Sbjct: 303 RRDAVAELTKLASTKKIAPGDFHEICRTLKKLITDVNLAVSVEATQAIGNLAKGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
G+SR LLPVLLEKLKEKKPT+ E+L+QTLQAMHK+GC+ L+DV+EDV+ +VKNKVPLVRS
Sbjct: 363 GNSRVLLPVLLEKLKEKKPTMTEALSQTLQAMHKSGCITLLDVIEDVRVAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
LTLNWV FCIETS+KA VLK+HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PL
Sbjct: 423 LTLNWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLS+MI GS D +GT +A +G + E +SS +R+SAASM
Sbjct: 483 ERSLEKLDDVRKKKLSDMI-GSASDTTSGTVAA--SNTGVGTSAREVMDSSSMRRSAASM 539
Query: 542 LSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAP--EDVEPSEMSLEEIESRL 598
LSGK+PV A PA+KK GP K +AKK G Q SK + AP EDVEPSEMSLEEIE +L
Sbjct: 540 LSGKKPVQAVPATKKSGPAKSATAKKTDGGPQ--SKASAAPVIEDVEPSEMSLEEIEEKL 597
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
S++ ++T+ QLKS VWKERLEAIS L+Q+VE++ LD+S E+LVRL+C +PGWSEKNVQ
Sbjct: 598 SSVVKSETISQLKSTVWKERLEAISMLKQEVESLTELDKSAELLVRLLCAVPGWSEKNVQ 657
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQVIEV Y+A+T +FPK+CVVLCLLGISERVADIKTR HAMKCLT F EAVGPGF+
Sbjct: 658 VQQQVIEVSTYIASTVNRFPKRCVVLCLLGISERVADIKTRGHAMKCLTAFCEAVGPGFV 717
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMVSAVEDFG+S+LKLKD IDFCKD GLQSSAAATRNA
Sbjct: 718 FERLYKIMKEHKNPKVLSEGILWMVSAVEDFGISNLKLKDTIDFCKDIGLQSSAAATRNA 777
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV-VPKKTVRASESTSSV 837
TIKL+G LHKFVGPDIKGFL+DVKPALLS LDAEYEKNPFEGT PK+TVRA+++ SS
Sbjct: 778 TIKLIGVLHKFVGPDIKGFLSDVKPALLSTLDAEYEKNPFEGTASAPKRTVRAADAVSSA 837
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSG SDGLPREDIS K TPTL+K+L SPDWK+RLESI+AV+KI+EEA+KRIQP GT ELF
Sbjct: 838 SSGTSDGLPREDISAKITPTLLKNLGSPDWKLRLESIDAVSKIVEEAHKRIQPTGTVELF 897
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
LR RLYDSNKNLVMATL T+G +ASAMGPAVEKSSKG+L+D+LKCLGDNKKHMRECTL
Sbjct: 898 TALRARLYDSNKNLVMATLSTIGGLASAMGPAVEKSSKGILADVLKCLGDNKKHMRECTL 957
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T LD W+AA LDKMVPY+T L D K G+EGRKDLFDWLSK + +S +A LLKP+
Sbjct: 958 TALDLWVAAAQLDKMVPYITVTLGDQKTGSEGRKDLFDWLSKHASNMSDPSEALPLLKPS 1017
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ ++ DKSS+VRKAAE+ + EIL+ GQ+ + KNLKD+ P LA++ ER+KL+ +
Sbjct: 1018 ASSLMDKSSEVRKAAESFMNEILKICGQDVVAKNLKDLPSPTLAIVAERLKLSTVHEGFS 1077
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
SM SK+ SK K N + ++A+S R IP + + +++S QD ++Q
Sbjct: 1078 DSVKMVTTSMSLPSKAGSKNNKHGPNDRGSNVSKAVSQRGIPARSSV--TMISSQD-SIQ 1134
Query: 1128 SQALLNVKDSNKEDRERMV-VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKK 1186
SQAL N+KDSNKE+RER V VR+FKFE+PR EQI EL+ ++ ++FRED+ RL ++DFK+
Sbjct: 1135 SQALFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKR 1194
Query: 1187 QVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEG 1246
Q+DG+E+LQKALPS RK++IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D+
Sbjct: 1195 QIDGIELLQKALPSSRKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQS 1254
Query: 1247 YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNR 1306
Y LTE+EAA+FLPCL+EKSGHNIEKVREKM EL KQ+VN YS K LPYILEGLRSKNNR
Sbjct: 1255 YMLTEAEAAIFLPCLMEKSGHNIEKVREKMGELIKQMVNIYSLPKLLPYILEGLRSKNNR 1314
Query: 1307 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
TRIECVD++G+ +DHHG E+SG LK+L VA+LTAERDGEIRKAALNTLAT YK LG+D+
Sbjct: 1315 TRIECVDIIGYFMDHHGTEVSGLLKNLPSVAALTAERDGEIRKAALNTLATAYKNLGDDV 1374
Query: 1367 WRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD-V 1425
WRYVGKL+DAQ+SMLDDRFKWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+ V
Sbjct: 1375 WRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGEAV 1434
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVS-GPTDWNEALDIISFGSPEQSVEGMK 1484
S+S++G + R N+G+S+ H ++PR +A+ + GP DW EALDI++ G PEQSVEGMK
Sbjct: 1435 SRSMAGSMISRENFGYSDAH----MVPRQMATATPGPADWREALDIVALGLPEQSVEGMK 1490
Query: 1485 VVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLM 1544
V+CHEL QA DPE SV+D+L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTLM
Sbjct: 1491 VICHELTQAV-DPESSVLDDLIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTLM 1549
Query: 1545 QTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRT 1604
QTFQ KRLA+AV+E TLD+LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNA+RT
Sbjct: 1550 QTFQIKRLAHAVKEGTLDNLITELLLWLLDERVPLMDDGSQLLKALNVLMLKILDNAERT 1609
Query: 1605 SSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDR 1664
SSFVVLINLLRPLDPSRWPSP ES A +NQ+FSDLVVKCLIKLTKVLQSTIY+VDLDR
Sbjct: 1610 SSFVVLINLLRPLDPSRWPSPTPPESLAVKNQKFSDLVVKCLIKLTKVLQSTIYEVDLDR 1669
Query: 1665 ILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQ 1724
ILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPID +PQ
Sbjct: 1670 ILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDAEPQ 1729
Query: 1725 PIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKK 1784
PIILAYIDLNL+TLAAARMLT +G GQTHWGD+ +NNP +T+S DAQLKQELAA+FKK
Sbjct: 1730 PIILAYIDLNLQTLAAARMLTPSGTMGQTHWGDAGSNNPNPSTHSTDAQLKQELAAVFKK 1789
Query: 1785 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS 1844
IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS
Sbjct: 1790 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSS 1849
Query: 1845 VPMATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAI 1904
+P++T PP + SP+FAP SPVHT S+N+ N + T R G I
Sbjct: 1850 LPLST-PPPIAPIPSPKFAP-SPVHTKSINNKTDCNEDDAGGD-------THPFRGQGEI 1900
Query: 1905 ASKVLPPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGN-RPLINMND 1963
+++ ++ + +R+ +SGTLDA+RERMKS+Q AA N D RPL +MN
Sbjct: 1901 DNRL-----QTTNLQTDRYQ---SSGTLDALRERMKSIQAAAVGANFDGVQARPLPSMNG 1952
Query: 1964 NVNNGLSSQSRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2015
N +G R + Q + PMDE+ALSGLQARMERLKSG++EPL
Sbjct: 1953 NTLHG-------GTRLDADPQTQNIIPPMDERALSGLQARMERLKSGSMEPL 1997
|
Microtubule-associated protein that is essential for cortical microtubules organization and function. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q14008|CKAP5_HUMAN Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 622 bits (1605), Expect = e-177, Method: Compositional matrix adjust.
Identities = 463/1511 (30%), Positives = 761/1511 (50%), Gaps = 119/1511 (7%)
Query: 13 KLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKA 72
KLP + + HK WK R + + I D K + L KK V DSNA VQ K
Sbjct: 9 KLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKG 68
Query: 73 LDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLD 131
L+A + Y++ A AG+ EV + +K + K E + ++++E+E + +
Sbjct: 69 LEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQE 127
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGL 191
+ K + NK K +V I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K +
Sbjct: 128 ELLKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLI 187
Query: 192 TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELI 250
+E+ RWI +D ++ L + + KELE E V + +A RPTR +R++Q+ E E
Sbjct: 188 AVEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQ 245
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ +
Sbjct: 246 QSAGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALESVE 304
Query: 311 KLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369
L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F + ++P
Sbjct: 305 VLIKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVP 364
Query: 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT- 428
+LEK KEKKP V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 365 TILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIAR 422
Query: 429 ---FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482
C ++ ++LK P C ++ +ND PEVRDAAF L K VG + +
Sbjct: 423 SFRHCTASTLPKSLLK------PFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVN 476
Query: 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV---RKSAA 539
+ +D ++ +K+ E S +V+ G + A + F ++AA
Sbjct: 477 PFLADVDKLKLDKIKE-------------CSEKVELIHGKKAGLAADKKEFKPLPGRTAA 523
Query: 540 SMLSGKR-----------PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDV 584
S +G + P+ APA+K GGP K A G+G T K E E V
Sbjct: 524 SGAAGDKDTKDISAPKPGPLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIV 583
Query: 585 EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644
EP E+S+E E + +++P + L S+ WKERL + ++ VE + + + LVR
Sbjct: 584 EP-ELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVR 642
Query: 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMK 704
++ PGW E N QV Q + ++ +A F K + L G+ +++ D+K +A +
Sbjct: 643 MLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGNNAKE 701
Query: 705 CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764
+T +EA + E++ + KNPK SE + W+ +A+++FG S L +K I K
Sbjct: 702 AMTAIAEACMLPWTAEQVVSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK 761
Query: 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 824
T L ++ A R A I LLG ++ +VGP ++ F D KPALLS +DAE+EK +G P
Sbjct: 762 -TALAATNPAVRTAAITLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEK--MQGQSPP 818
Query: 825 KKTVRASESTSSVSSGGSDG-------------LPREDISGKFTPTLVKSLESPDWKVRL 871
T S+ ++S + G DG LPR +IS K T LV + +WK+R
Sbjct: 819 APTRGISKHSTSGTDEGEDGDEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKIRK 878
Query: 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931
E ++ V I+ +A K IQP GEL L+GRL DSNK LV TL L +A AMGP ++
Sbjct: 879 EGLDEVAGIINDA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIK 936
Query: 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRK 991
+ K + I+ LGD+K ++R L ++AW + + + + K R+
Sbjct: 937 QHVKNLGIPIITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQ 996
Query: 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
+L WL+++L L P L P + + D++ DVRK A+ + + G E + K
Sbjct: 997 ELLGWLAEKLPTLRSTPTDLILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAK 1056
Query: 1051 ---NLKDIQGPALALILERIKLN-----------------GASQVSMGPTSK------SS 1084
LK + +LE+ K+N G++ P S SS
Sbjct: 1057 ATGKLKPTSKDQVLAMLEKAKVNMPAKPAPPTKATSKPMGGSAPAKFQPASAPAEDCISS 1116
Query: 1085 SKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER 1144
S PK G +SS+ +G + S S+++ +S + V + KE R +
Sbjct: 1117 STEPKPDPKKAKAPG---LSSKAKSAQGKKMPSKTSLKEDEDKSGPIFIVVPNGKEQRMK 1173
Query: 1145 ----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200
+ V ++ F PR E I++L+ M + L + +DF+ L ++ L S
Sbjct: 1174 DEKGLKVLKWNFTTPRDEYIEQLKTQMSSCVAKWLQDEMFHSDFQHHNKALAVMVDHLES 1233
Query: 1201 IRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPC 1260
++ +I LD++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+EA+ F+P
Sbjct: 1234 EKEGVIGCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPY 1293
Query: 1261 LVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLID 1320
LV K G + +R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++ +G L++
Sbjct: 1294 LVVKVGEPKDVIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLVE 1353
Query: 1321 HHGAEISGQL--KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQK 1378
+G + K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G L++
Sbjct: 1354 SYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDM 1413
Query: 1379 SMLDDRFKWKVREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQSGDVSQS 1428
SML++R K + K+ E KP A+ LR+ E+ S Q+ +S
Sbjct: 1414 SMLEERIKRSAKRPSAAPIKQVEEKPQRAQNISSNANMLRKGPAEDMSSKLNQARSMSGH 1473
Query: 1429 VSGPTLMRRNY 1439
++RR +
Sbjct: 1474 PEAAQMVRREF 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Homo sapiens (taxid: 9606) |
| >sp|A2AGT5|CKAP5_MOUSE Cytoskeleton-associated protein 5 OS=Mus musculus GN=Ckap5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 604 bits (1557), Expect = e-171, Method: Compositional matrix adjust.
Identities = 448/1501 (29%), Positives = 753/1501 (50%), Gaps = 99/1501 (6%)
Query: 13 KLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKA 72
KLP + + HK WK R + + I D K + L KK V DSNA VQ K
Sbjct: 9 KLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKG 68
Query: 73 LDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLD 131
L+A + Y++ A AG+ EV + +K + K E + +++VE+E + +
Sbjct: 69 LEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQE 127
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGL 191
+ K + NK K +V I+ + +ALSEFG+KII K I+K+LP+LF+ +D+ VR +K
Sbjct: 128 ELLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLF 187
Query: 192 TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELI 250
+E+ RW +D VK L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 188 AIEIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQ 245
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
G D P++D YEL+D V+IL+ L K F++ ++A KW ERK+A+ +
Sbjct: 246 QSAGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDKIEAKKWQERKEALEAVE 304
Query: 311 KLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369
L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F + ++P
Sbjct: 305 VLVKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVP 364
Query: 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT- 428
+LEK KEKKP V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 365 TILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIAR 422
Query: 429 ---FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482
C ++ ++LK P C ++ +ND PEVRDAAF L K VG + +
Sbjct: 423 SFRHCTSSTLPKSLLK------PFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKSVN 476
Query: 483 RSIEKLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK 536
+ +D ++ +++ E ++ G +AT ++ +P A+ + K
Sbjct: 477 PFLADVDKLKLDRIKECSEKVELVHGKKSGLATEKKESK------PLPGRAAASGAAGDK 530
Query: 537 SAASMLSGKRP--VSAAPASKKGGPVKPSAKK----DGSGKQETSKLTEAPEDVEPSEMS 590
+SG +P + P +K GGP K S + K E E VEP E+S
Sbjct: 531 DTKD-VSGPKPGPLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGLETKEIVEP-ELS 588
Query: 591 LEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP 650
+E E + +++P + L S+ WKERL + ++ VE ++ + + LV+++ P
Sbjct: 589 IEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMPCQALVKMLAKKP 648
Query: 651 GWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFS 710
GW E N QV Q + ++ +A F K + L G+ +++ D+K +A + +T +
Sbjct: 649 GWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIA 707
Query: 711 EAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS 770
EA + E++ + KNPK SE + W+ +A+++FG S L +K I K T L +
Sbjct: 708 EACMLPWTAEQVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKAFISNVK-TALAA 766
Query: 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830
+ A R + I LLG ++ +VGP ++ D KPALLS +DAE++K + P + + A
Sbjct: 767 TNPAVRTSAITLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGI-A 825
Query: 831 SESTSSVSSGGS------------DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878
STS+ G D LPR +IS K T LV + +WK+R E ++ V
Sbjct: 826 KHSTSATDEGEDGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNWKIRKEGLDEVA 885
Query: 879 KILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938
I+ EA K IQP GEL L+GRL DSNK LV TL L +A AMG + + K +
Sbjct: 886 GIINEA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGANIRQHVKNLG 943
Query: 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998
++ LGD+K ++R L ++AW + + + + K R++L WL+
Sbjct: 944 IPVITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLA 1003
Query: 999 KQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKD 1054
++L L P L P + + D++ DVRK A+ + + G E + K LK
Sbjct: 1004 EKLPTLRSTPTDLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKP 1063
Query: 1055 IQGPALALILERIKLNGASQVS---------MGPTSKSSSK-VPKSASNGVS-------- 1096
+ +LE+ K N S+ + MG ++ + ++ +P + VS
Sbjct: 1064 TSKDQVLAMLEKAKANMPSKPAAPAKAMSKPMGGSAPAKTQPIPAPVEDSVSSTIEAKPD 1123
Query: 1097 --KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER----MVVRRF 1150
K +SS+ +G + S ++++ +S + V + KE R R + V ++
Sbjct: 1124 LKKAKAPGVSSKAKSVQGKKVPSKTTLKEDDDKSGPIFIVVPNGKEQRMRDEKGLKVLKW 1183
Query: 1151 KFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLD 1210
F PR E I++L+ M + L + +DF+ L ++ L S + +I LD
Sbjct: 1184 NFTTPRDEYIEQLKTQMSTCVAKWLQDEMFHSDFQHHNKALAVMVDHLESEKDGVISCLD 1243
Query: 1211 ILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIE 1270
++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+EA+ F+P L+ K G +
Sbjct: 1244 LILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPYLILKVGEPKD 1303
Query: 1271 KVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQL 1330
+R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++ +G LI+ +G +
Sbjct: 1304 VIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLIESYGMNVCQPT 1363
Query: 1331 --KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWK 1388
K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G L++ SML++R K
Sbjct: 1364 PGKALKEIAIHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDMSMLEERIKRS 1423
Query: 1389 VREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRN 1438
+ K+ E KP + LR+ E+ S Q+ +S ++RR
Sbjct: 1424 AKRPSAAPVKQAEEKPQRTQNINSNANMLRKGPAEDMSSKLNQARSLSGHPEAAQMVRRE 1483
Query: 1439 Y 1439
+
Sbjct: 1484 F 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Mus musculus (taxid: 10090) |
| >sp|Q1ZXQ8|MTAA_DICDI Centrosomal protein 224 OS=Dictyostelium discoideum GN=mtaA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 275/1036 (26%), Positives = 510/1036 (49%), Gaps = 63/1036 (6%)
Query: 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
EDR+ HKNWK R +L + + E GP FKK +AD N Q++AL+ L
Sbjct: 12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPL 71
Query: 77 IAYLKAADADAGRYAKEVCDAIAAKCL-TGRPKTVEKAQAVFMLWVELEAVDVFLDVMEK 135
A++ D ++A + K + RP+ EK +L +E ++ + ++ + K
Sbjct: 72 SAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLK 130
Query: 136 AIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195
+ K ++ ++ + QAL FG K IP K ILK F+++D+ +R + L +E+
Sbjct: 131 GTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEI 190
Query: 196 CRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISEDV 254
RWIGK + ++ E + K L+ + + + A P + R+E K L S+ +
Sbjct: 191 YRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPAVPLKYTRSEAAKALANA--SKGI 247
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-TKLA 313
P +V EID Y L+ V+IL P S F+EG++A KW ER + + +L T L
Sbjct: 248 QAKP------EVVEEIDPYSLMTAVNIL-PKLTSEFYEGLQAKKWQERSEQMDKLVTILT 300
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373
+T +I DF+E+C+ LKK++ DVN+ + +A+ +IG LA LR F+ + + +LE
Sbjct: 301 NTPKIETADFSELCKALKKILADVNVMIVQKAVVSIGLLADSLRGGFTSYVKPFITPILE 360
Query: 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433
K KEKK +V +S+ T+ ++ ++L D+++++ ++++KVP ++ L ++ I
Sbjct: 361 KFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTATMQSKVPQIKQEVLVFICNSITN 419
Query: 434 SSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492
+ K A + KV K I ME LND +RD A AA+ +G R + + ++D ++
Sbjct: 420 TKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAFAALGGIIGERAMTPYLNQIDPIK 479
Query: 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552
K+ + + VAT + + + ++ SS S K+P +A
Sbjct: 480 AKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLPVSS----------SNKKPAAAT- 524
Query: 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL--GSLIPADTVGQL 610
S + + + P S ++I+++L ++ + + L
Sbjct: 525 -----------GNSKSSSTTTPTGRSSNSSPLPPPPSSSDDIKNKLIGAGIVNNEIIEGL 573
Query: 611 KSAVWKERLEAISSLRQQVEAV--QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 668
WK+RL+A+ + + V+ + +++ E +++L+C P E N QV + +
Sbjct: 574 GKTQWKDRLQAVDDILENVKGLTADSINGMSESIIQLLCDKPSLKESNFQVLSSIFSIFI 633
Query: 669 YLAATATKFP-KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
+ F ++C L E++ D+K + + + L + E++ P +F +Y+
Sbjct: 634 QCCKNDSNFTQQRCANSYLTTCIEKLTDVKLKEISSELLFSTGESITPHAVFTSIYQFTS 693
Query: 728 DHKNPKVLSEGILWMVSAVEDFGVSHL-----KLKDLIDFCKDTGLQSSAAATRNATIKL 782
+HKNPK++++ ++W+ A+++FG+ +LK L+D+ K L+S+ + + IKL
Sbjct: 694 NHKNPKIIADSLVWIQQAIDEFGIGCCSNGIQQLKPLLDYTKQC-LESTNPDVKKSAIKL 752
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842
L + +G + FL DVK + LD E++K + VP + + S
Sbjct: 753 LCTIKINIGATLTDFLGDVKKPTMEVLDREFQKIRDQKPPVPNRQWKGMPPPGSAPVQIE 812
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902
PR DIS K TP ++ +L +WK R ++++ + +I+ +AN++IQP G L L+
Sbjct: 813 --FPRVDISVKLTPAIITNLSDANWKTRSDALDEIERIIIDANRKIQPK-LGGLIPALKN 869
Query: 903 RLYDSNKNLVMATLITLGAVASAM-GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
RL D+N+ + TL +G ++ AM G + EK ++ ++ IL LGD+KK +R+ ++ ++
Sbjct: 870 RLTDNNQKCTITTLNIIGMLSQAMGGQSFEKHARLLIPGILLLLGDSKKPVRDAVISCMN 929
Query: 962 AWLAA-VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP---DAAHLLKPA 1017
+ + + D + + + A RK+ W +T + P + L K
Sbjct: 930 VIVQSDLGFDVFIGSLAAPMIQE--SAFTRKESLAWTIVNVTNMKAAPIPSEINTLAKGI 987
Query: 1018 SIAMTDKSSDVRKAAE 1033
+ DKS+++R A+
Sbjct: 988 ISCLQDKSAEIRSLAD 1003
|
Involved in regulation of microtubule dynamics. Regulates the interaction of microtubules tips with the centrosome and cell cortex. Dictyostelium discoideum (taxid: 44689) |
| >sp|O94534|ALP14_SCHPO Spindle pole body component alp14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (485), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 161/568 (28%), Positives = 263/568 (46%), Gaps = 65/568 (11%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRI---RELGPLF 57
MS++++ ++ KLP E R++HK WKVR A + + D DN L+
Sbjct: 1 MSQDQE--EDYSKLPLESRIVHKVWKVRLSAYEECSKSFSLSADGSDNCFELWNNQSELW 58
Query: 58 KKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCD-AIAAKCLTG-RPKTVEKAQA 115
K + DSN Q+ A +AY + +D A+E+ +I+ KCLT R T E A
Sbjct: 59 KSVLTDSNVAAQEAGTAAFVAYCRFSDPSHLLKAREISVLSISEKCLTSPRAGTRENALE 118
Query: 116 VFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPE 175
ML VE ++ ++ + ++ + K + + + + +FGAK+IP K I+ +
Sbjct: 119 ALMLLVEADSAAPVIESIIPSLSARSPKVIASNVAAIASLVEQFGAKVIPSKMIIPHISN 178
Query: 176 LFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235
LF H D+NVR + LT+ + RW G DP+K +LF+ +R KELE + P +
Sbjct: 179 LFGHADKNVRKEASRLTVNIYRWTG-DPLKDLLFKDLRPVQTKELESLFAEL--PTEPPK 235
Query: 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEI-----------DEYELVDPVDILTP 284
+ R L S+ P+ E+ + P + D+++LV+ VD+L P
Sbjct: 236 QTRF---------LKSQQPTSEPNVETQVEEQPALENEESEPEPSDDQFDLVEEVDVL-P 285
Query: 285 LEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAV 343
+ ++KW +RK+A+ +L + S +I DF + L K ++ D NI V +
Sbjct: 286 NVDPNLETLMASSKWKDRKEALDKLLPVLSQPKIKDNDFFNLVAILTKSVSKDANIMVVI 345
Query: 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403
A I +A+GLR++FS + + LLE+ KEKK V ESL+ + A+ L+ D
Sbjct: 346 NAAHCIQAMAKGLRSNFSKYASTSINALLERSKEKKANVIESLSSAMDAVLATSSLD--D 403
Query: 404 VVEDVKTSVKNKVPLVRSLTLNWVT------------FCIETSSKAAVLKVHKDYVPICM 451
+ E + + NK P ++S + + F ++T +KA V V + P
Sbjct: 404 LAELIASFAGNKNPQIKSSCFSLFSRSFSNMTSLPSKFTVDTCAKACVPGVSDTFEP--- 460
Query: 452 ECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511
VR AA L + K VG R + + + LDD+R++K+ T T
Sbjct: 461 ---------VRSAAAEALGVLMKLVGERAINQYLSPLDDIRKSKIRSF-------YETAT 504
Query: 512 SSARVQTSGGSVPSVEASESSFVRKSAA 539
A+ T V + ES V S A
Sbjct: 505 VKAKAPTKKSKVKPSKQEESKVVVPSNA 532
|
Required for bipolar spindle formation and proper chromosome segregation. Has a role in connecting the kinetochores and the plus end of pole to chromosome microtubules. Also required for the activation of the spindle checkpoint pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q09933|DIS1_SCHPO Phosphoprotein p93 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dis1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 129/521 (24%), Positives = 233/521 (44%), Gaps = 45/521 (8%)
Query: 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIREL---GPLFKKTVADSNAPVQDKALDA 75
++ K+WKVR EA L + D D + L+K+ + DSN P Q+ A+ +
Sbjct: 13 QIFDKSWKVRFEAYESLLHALNRALDDSDVCFQPWIHDPALWKQGLCDSNVPTQEHAVKS 72
Query: 76 LIAYLKAADADAGRYAKE-VCDAIAAKCLTGRPKTVEKA--QAVFMLWVELEAVDVFLDV 132
L +L + AK V + KCL +++ A QA+ +L + +A+D L+
Sbjct: 73 LRCFLDKSRQKGVNSAKSFVVAPLLEKCLPSPRQSIRDASHQALLIL-AKSDALDYVLEG 131
Query: 133 MEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ A + K K V +I + L FG + P K++P LF D+N+R + L+
Sbjct: 132 LFSAARVKHPKQAVASIKELNSLLENFGIPALSPIPFYKLIPTLFAQSDKNIRQEASNLS 191
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV------------------------S 228
+ L W+G + KT +F +++ +LE NV S
Sbjct: 192 ITLYAWVG-NAFKTHVFPQLKQIQVSDLEASFQNVTSRTTTGGHISNSLNTQEVVLPSFS 250
Query: 229 GTARPTRKIRAEQDKELG--QELISEDVGPG-----PSEESTADVPPEIDEYELV---DP 278
A+P + ++ + Q S P PS+ S + + + + P
Sbjct: 251 SNAKPKPHLSSKSSSQGNTLQRSTSSFSTPNRKVSQPSDFSASPSRSIVSPAKNIVGSTP 310
Query: 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVN 338
VD+L+ L F + + KW +RK+A+ + + S GD++E+ R + K + D N
Sbjct: 311 VDVLSKLTPE-FHTALSSPKWKDRKEALESMVPVCSNPVYQEGDYSELLRVIAKSLKDAN 369
Query: 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398
+ V A + ++A+ LR F + +LP L ++ KE+K ++ SL A+ ++
Sbjct: 370 VVVVGVAALLLTHIAKALRKGFLPYTGIVLPSLFDRFKERKSSLVHSLLDAANAIFESCG 429
Query: 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458
LN D++++ +K+K P V++ TL W+ C++ + + +C+ +ND
Sbjct: 430 LN--DIMDETLEFLKHKNPQVKTETLRWLNRCLQLTDVCPPRASLETLCSLCVTLINDTF 487
Query: 459 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499
VR A +VLA + + L + I LD + K+ E+
Sbjct: 488 EPVRMATTNVLATLVQIFSQPVLSKYIVGLDPKKLPKILEL 528
|
Has a role in sister chromatid separation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P46675|STU2_YEAST Protein STU2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STU2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 190/754 (25%), Positives = 352/754 (46%), Gaps = 111/754 (14%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALC-DSITD-PKDNRIRELG---P 55
MS EE++ + LP E+RL +K WK R EA +L L +S+ D +D+ I+
Sbjct: 1 MSGEEEV--DYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPT 58
Query: 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVC------DAIAAKCLTG-RPK 108
LF + + DSN Q++A+ AL + + A + + + A + + K LT R
Sbjct: 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT 118
Query: 109 TVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI 163
T ++ + + L ++V++ + EK K+ K + A + +++ ++ FG
Sbjct: 119 TKTQSMSCILSLCGLDTSITQSVELVIPFFEK----KLPKLIAAAANCVYELMAAFGLTN 174
Query: 164 IPPK----RILKMLPELFDHQDQNVRASSKGLTLELCRWIGK--DPVKTILFEKMRDTMK 217
+ + +LK +P+L H D+NVR+ + L +E+ + G D ++ ILF+K++
Sbjct: 175 VNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQV 234
Query: 218 KELEVELVNVSGTARPTRKI----RAEQDKELGQE--------LISEDVGPGPSEES--- 262
K+L V ++ + + E +K+ QE ++S D G ++
Sbjct: 235 KDLHKLFAKVGDEPSSSKMLFEWEKRELEKKRSQEEEARKRKSILSNDEGEYQIDKDGDT 294
Query: 263 ----TADVPP-------EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-- 309
D+PP +ID + ++ IL L K F E + ++KW +R +A+ E
Sbjct: 295 LMGMETDMPPSKQQSGVQIDTFSMLPEETILDKLPK-DFQERITSSKWKDRVEALEEFWD 353
Query: 310 TKLASTKRI--APGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRT-HFSGSS- 364
+ L+ TK++ +++ + +I D NI A Q++ + L+T FS
Sbjct: 354 SVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 413
Query: 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLV 419
+ LL++ KEKKP+V E++ + L + K A D+++D+ +K+K P +
Sbjct: 414 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQI 473
Query: 420 R--SLTLNWVTFCIETSSKAAVLKVHKD-YVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476
R L + E + + + KD VPI ++ +ND P +R F A + K
Sbjct: 474 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 533
Query: 477 GMRPLERSIEKLDDVRRNKLSEMIAG-SGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
GM +++E LD+++R K+ E + +A+G++ + ++T+ + P E+ F+
Sbjct: 534 GMNTFVKTLEHLDNLKRKKIEETVKTLPNFSIASGSTHSTIETNKQTGP----MENKFLL 589
Query: 536 KSAASMLSGKRPVSAAP----ASKKGGPV-------KPS--AKKDGSGKQETSKLTEAPE 582
K +S+L KR V+++P K P+ KPS A + S TSK P+
Sbjct: 590 K-KSSVLPSKR-VASSPLRNDNKSKVNPIGSVASASKPSMVAANNKSRVLLTSKSLATPK 647
Query: 583 DV-----EPSEMSLEEIESRLGSLIPADTVGQLKSAVW-KER---LEAISSLRQ-QVEAV 632
+V + +E +EE + RL L Q +W KER LE +++ ++E +
Sbjct: 648 NVVANSTDKNEKLIEEYKYRLQKL-------QNDEMIWTKERQSLLEKMNNTENYKIEMI 700
Query: 633 QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666
+ + E L L +EKN+Q++ + I+V
Sbjct: 701 KENEMLREQLKEAQSKL---NEKNIQLRSKEIDV 731
|
May play a role in the attachment, organization, and/or dynamics of microtubule ends at the spindle pole body. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|G5EEM5|ZYG9_CAEEL Zygote defective protein 9 OS=Caenorhabditis elegans GN=zyg-9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 10/232 (4%)
Query: 269 EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL--ASTKRIAPGDFTEV 326
E D ++ +D D+L+ + GF +++ KW ERK+A+ L +L A+ K ++ +
Sbjct: 286 EADPWDFLDAFDVLSKM-PDGFDTNIESKKWQERKEALEGLLQLITANPKLDPKANYGAL 344
Query: 327 CRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAES 385
L+K++ D NI VA A I +A GLRT F + + P++ EK KEKKPT+ +
Sbjct: 345 VERLQKVLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDP 404
Query: 386 LTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFC-IETSSKAAVLKVHK 444
L + A+ NL V E V ++ P +++ T ++ C ++ +S+ K K
Sbjct: 405 LVACIDAV--VATTNLEAVGEIVLAALGKPNPSIKTQTDLFLQRCFMKLNSQTMPKKTLK 462
Query: 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496
+P ++ D EVR+A+++ + A+ +++G +P S++ L D+ + L
Sbjct: 463 TLIPSLIKHSGDSDSEVREASYAAMGAMMRAIGEKP---SLQLLADIASDNL 511
|
Plays a major role in organizing microtubules and spindle poles during mitosis and meiosis in one-cell stage embryos. Required for default nucleus positioning in oocytes. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q2UCC9|STU1_ASPOR Protein stu1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=stu1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 139/336 (41%), Gaps = 44/336 (13%)
Query: 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGL----RTHF-SGSSRFLLPVLLEKLKEKKP 380
+ +L+ IT + A+ G+ + L + H S +R PVLLE+L + K
Sbjct: 46 IFESLRLAITSHHAALYAAGFSTFGHFLKRLFIQDQAHIVSAYARHFCPVLLERLGDHKE 105
Query: 381 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440
V Q + A ++ V +V + KN P + +L W++ S +L
Sbjct: 106 RVRAQAAQIFTDLWPAASADVEHYVLEVALTGKN--PKAKETSLIWLS---NMSRNHGLL 160
Query: 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL--DDVRRNKLSE 498
+ YVP + CL D VR A S + + + R +++ +VR++ ++
Sbjct: 161 --FRSYVPSVVSCLEDADSFVRHTAKSTVVELFQGAPARAKADLTKEMTAQNVRQSIVNA 218
Query: 499 MIAGSGGDVATGTSSARVQTSGGSVPSVE------ASESSFVRKSAASMLSGK--RPVSA 550
+ A G + + T+ R + P + AS + V + A+++S RP
Sbjct: 219 VYANIGLEDHSSTARPRSRVEPRYTPCTDSHPLRSASRAEVVHQQPAAVVSSAPLRPSKE 278
Query: 551 APASKKGGPVK--PSAKKDGSGK-----------------QETSKLTEAPEDVEPSEMSL 591
A + P+K P + K G+ + +S+ EAP+ + +E S
Sbjct: 279 ATPMVEPEPIKSRPGSSKSDKGRTIAAAPEAEKAPHMETARPSSQDGEAPQPLH-AETS- 336
Query: 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627
+++E L PA G+ W+ R + I+SLR+
Sbjct: 337 KQVEDLFRVLSPA-FEGRESEDNWRHREKYITSLRR 371
|
Microtubule binding protein that promotes the stabilization of dynamic microtubules. Required for mitotic spindle formation. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2015 | ||||||
| 255587410 | 1992 | microtubule associated protein xmap215, | 0.982 | 0.993 | 0.844 | 0.0 | |
| 224061471 | 2036 | microtubule organization protein [Populu | 1.0 | 0.989 | 0.841 | 0.0 | |
| 224115548 | 2025 | microtubule organization protein [Populu | 0.998 | 0.993 | 0.838 | 0.0 | |
| 356533943 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.997 | 0.987 | 0.816 | 0.0 | |
| 356574625 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.997 | 0.987 | 0.817 | 0.0 | |
| 19912731 | 2029 | microtubule bundling polypeptide TMBP200 | 0.997 | 0.990 | 0.787 | 0.0 | |
| 449434204 | 2005 | PREDICTED: protein MOR1-like [Cucumis sa | 0.987 | 0.992 | 0.789 | 0.0 | |
| 297823359 | 1980 | hypothetical protein ARALYDRAFT_482523 [ | 0.976 | 0.993 | 0.766 | 0.0 | |
| 30686489 | 1978 | microtubule organization 1 protein [Arab | 0.975 | 0.993 | 0.759 | 0.0 | |
| 115440677 | 1997 | Os01g0816400 [Oryza sativa Japonica Grou | 0.981 | 0.989 | 0.722 | 0.0 |
| >gi|255587410|ref|XP_002534264.1| microtubule associated protein xmap215, putative [Ricinus communis] gi|223525620|gb|EEF28119.1| microtubule associated protein xmap215, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3479 bits (9020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1711/2027 (84%), Positives = 1834/2027 (90%), Gaps = 47/2027 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAA CDSITDPKD R+RE GPLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAAFCDSITDPKDPRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQASFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAVDVFLD MEKAIKNKVAKAVVPAIDVMFQALSEFGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVDVFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE GPG SEE+ AD P EIDEYELVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEPEAVSEVAGPGQSEEAAADAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
S SSRFLLPVLLEKLKEKKP + ESL QTLQA+HK+GCL+LVD+VEDVKT+VKNKVPLVR
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALTESLAQTLQALHKSGCLSLVDIVEDVKTAVKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
SLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFS LAAIAKSVGMRP
Sbjct: 421 SLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSALAAIAKSVGMRP 480
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
LERS+EKLDDVRR KLSEMI GSGG+ + GTSSA VQ GSV S EASE SFVR+SAAS
Sbjct: 481 LERSLEKLDDVRRKKLSEMIGGSGGNASGGTSSATVQAVSGSVSSTEASEGSFVRRSAAS 540
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
MLSGK+P+ AAPA+KKGGP K K DG+G+ ETSK E PEDVEP+EMSLEEIESRL
Sbjct: 541 MLSGKKPLPAAPANKKGGPTKSGTNKKGDGAGRTETSKAIEPPEDVEPAEMSLEEIESRL 600
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
GSLI A+TV QLKS VWKERLEAISSL+QQVE +Q LDQSVEIL+RL+C +PGW+EKNVQ
Sbjct: 601 GSLIQAETVSQLKSTVWKERLEAISSLKQQVEGLQGLDQSVEILIRLLCAIPGWNEKNVQ 660
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQ+IEVI YLA+TATKFPKKCVVLCLLG SERVADIKTRAHAMKCLTTFS
Sbjct: 661 VQQQMIEVITYLASTATKFPKKCVVLCLLGTSERVADIKTRAHAMKCLTTFS-------- 712
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
VEDFGVS LKLKDLIDFCKD GLQSS AA+RNA
Sbjct: 713 ---------------------------VEDFGVSLLKLKDLIDFCKDIGLQSSVAASRNA 745
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSV 837
TIKLLGALHK+VGPDIKGFL+DVKPALLSALDAEY+KNPFEG + PKKTVRASES SSV
Sbjct: 746 TIKLLGALHKYVGPDIKGFLSDVKPALLSALDAEYDKNPFEGASAAPKKTVRASESMSSV 805
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
S+GG D LPRED+SGK TPTL+KS+ESPDWKVRLESIEAVNKI+EEANKRIQP GTGELF
Sbjct: 806 SAGGLDSLPREDVSGKVTPTLLKSMESPDWKVRLESIEAVNKIIEEANKRIQPTGTGELF 865
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
G LRGRLYDSNKNLVMATL T+G VASAMGPAVEKSSKG+L+DILKCLGDNKKHMREC L
Sbjct: 866 GALRGRLYDSNKNLVMATLTTIGGVASAMGPAVEKSSKGILADILKCLGDNKKHMRECAL 925
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T +D+WLAAVHLDKM+PY+ TAL DAKLGAEGRKDLFDWLS+QL+GLS F DA HLLKPA
Sbjct: 926 TTIDSWLAAVHLDKMIPYIATALIDAKLGAEGRKDLFDWLSRQLSGLSDFSDAVHLLKPA 985
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
AMTDKSSDVRKAAEACI E+LR GQET+EKNLKD+ GPALAL+LER+K GA Q
Sbjct: 986 GSAMTDKSSDVRKAAEACITEVLRVSGQETVEKNLKDLHGPALALVLERVKPYGAFQESF 1045
Query: 1075 -----VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQ 1129
+SMGPTSK+++KV KSA+NGV KH NR SSR IPTKG+R E +MSVQD AVQSQ
Sbjct: 1046 DSAKTISMGPTSKTNAKVGKSATNGVPKHANRITSSRAIPTKGSRSEPMMSVQDRAVQSQ 1105
Query: 1130 ALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVD 1189
ALLNVKDSNKEDRERMVVRRFKFE+ RIEQIQ+LENDMMKYFREDLHRRLLS DFKKQVD
Sbjct: 1106 ALLNVKDSNKEDRERMVVRRFKFEELRIEQIQDLENDMMKYFREDLHRRLLSADFKKQVD 1165
Query: 1190 GLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSL 1249
GLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD LRDE Y+L
Sbjct: 1166 GLEMLQKALPSIAKELIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDMLRDEAYTL 1225
Query: 1250 TESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRI 1309
TESEAA+FLPCL+EK GHNIEKVREKMRELTKQIV+ YSA+KT PYILEGLRSKNNRTRI
Sbjct: 1226 TESEAAIFLPCLIEKLGHNIEKVREKMRELTKQIVHAYSASKTFPYILEGLRSKNNRTRI 1285
Query: 1310 ECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369
E DLVGFLIDHH AEISGQLKSLQIVASLTAERDGE RKAALNTLATGYKILGEDIWRY
Sbjct: 1286 ESADLVGFLIDHHVAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYKILGEDIWRY 1345
Query: 1370 VGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSV 1429
VGKLTDAQKSMLDDRFKWKVREMEK+KEG+PG++RAALRRSVRENG D+AEQSG+VSQSV
Sbjct: 1346 VGKLTDAQKSMLDDRFKWKVREMEKRKEGRPGDSRAALRRSVRENGFDLAEQSGEVSQSV 1405
Query: 1430 SGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE 1489
SGPT +R+NY ELH++R IMP A+ SVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE
Sbjct: 1406 SGPTFLRKNYSPHELHMDRQIMPHAVTSVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE 1465
Query: 1490 LAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQN 1549
LAQAT DPEGS MDELVKDADRLVSCLA+KVAKTFDFSLTGASSRSCKYVLNTLMQTFQN
Sbjct: 1466 LAQATGDPEGSAMDELVKDADRLVSCLASKVAKTFDFSLTGASSRSCKYVLNTLMQTFQN 1525
Query: 1550 KRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV 1609
KRLA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV
Sbjct: 1526 KRLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV 1585
Query: 1610 LINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI 1669
LINLLRP+DPSRWPS AS+E+FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI
Sbjct: 1586 LINLLRPVDPSRWPSSASSETFAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI 1645
Query: 1670 HVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA 1729
H+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA
Sbjct: 1646 HIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA 1705
Query: 1730 YIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQ 1789
YIDLNLETLAAARMLTSTGP GQTHWGDSAANNP+SAT+SADAQLKQELAAIFKKIGDKQ
Sbjct: 1706 YIDLNLETLAAARMLTSTGPVGQTHWGDSAANNPSSATHSADAQLKQELAAIFKKIGDKQ 1765
Query: 1790 TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMAT 1849
TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS+PM+T
Sbjct: 1766 TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSLPMST 1825
Query: 1850 PPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVL 1909
PPP+AL SSPE+APLSPVHTNS+NDAKSMN KSEP NF+LPP+Y+EDNR I S+ L
Sbjct: 1826 PPPSALTASSPEYAPLSPVHTNSINDAKSMNTKSEPANFHLPPAYSEDNRTVNTITSRGL 1885
Query: 1910 PPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGL 1969
EN L+DQRNE+F VT+GTLDAIRERMKSMQLAAAAGNPD GNRPL +NDN++NGL
Sbjct: 1886 ISENSLADQRNEKFLSGVTTGTLDAIRERMKSMQLAAAAGNPDSGNRPLTIVNDNLSNGL 1945
Query: 1970 SSQ-SRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2015
S Q R+ D ENP QG VLPMDEKALSGLQARMERLKSG I+ L
Sbjct: 1946 SGQVPRAPDSVGFENPVQGGVLPMDEKALSGLQARMERLKSGAIDSL 1992
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061471|ref|XP_002300496.1| microtubule organization protein [Populus trichocarpa] gi|222847754|gb|EEE85301.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3468 bits (8993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1713/2036 (84%), Positives = 1851/2036 (90%), Gaps = 21/2036 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKL WEDRLLHKNWKVRNEANIDLA+LCDSI+DPKD+R+RE PLF+KT
Sbjct: 1 MSEEEKLLKEAKKLAWEDRLLHKNWKVRNEANIDLASLCDSISDPKDSRLREFAPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAVDVFLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVDVFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVKGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE VG GPSEE A+ P EIDEY+LVDPVDIL PLEK+GFW+GVKATKWS
Sbjct: 241 QDKEPEPEGVSEVVGSGPSEEVAAEAPQEIDEYDLVDPVDILGPLEKAGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
SGSSRFLLPVLLEKLKEKKPT+ E+L QTLQAMH AGCLNL D++E VKT+VKNK
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTEALAQTLQAMHTAGCLNLADIIEGNLRDYVKTAVKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTLNWVTFCIETS+KA +LKVHKDYVPICMECLNDGTP+VRD+AFSVLAA+AKS
Sbjct: 421 VPLVRSLTLNWVTFCIETSNKAVILKVHKDYVPICMECLNDGTPDVRDSAFSVLAAVAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMIAGSG V SS VQ GS+ SVE SE SFV+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMIAGSGDGVPAVASSGPVQAVRGSMSSVETSEGSFVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVKP--SAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593
KSAASMLSGKRP AA A+KK P K S K DG+G+ E+S+ E PEDVEP+EMSLEE
Sbjct: 541 KSAASMLSGKRPAPAAAANKKAAPTKSGVSKKGDGAGRAESSRAIEPPEDVEPAEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IE+RLGSLI ADTV QLKSAVWKERLEAISS + QVE +QNLDQSVEIL+RL+C +PGW+
Sbjct: 601 IETRLGSLIQADTVSQLKSAVWKERLEAISSFKLQVEGLQNLDQSVEILIRLLCAIPGWN 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV
Sbjct: 661 EKNVQVQQQVIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGF+F+RLYKIMK+HKNPKVLSEGI+WMVSA++DFGVSHLKLKDLIDFCKDTGLQSS A
Sbjct: 721 GPGFVFDRLYKIMKEHKNPKVLSEGIIWMVSAIDDFGVSHLKLKDLIDFCKDTGLQSSVA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
A+RNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY+KNPFEG + PKKTVR SE
Sbjct: 781 ASRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYDKNPFEGASAAPKKTVRTSE 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
STSSVS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP G
Sbjct: 841 STSSVSGGGLDSLPREDISGKITPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPTG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRLYDSNKNL+M L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
RECTL LD+W+AAVHLDKMVPY+T AL + KLGAEGRKDLFDWLSKQL+G S F DA H
Sbjct: 961 RECTLNTLDSWVAAVHLDKMVPYITAALIETKLGAEGRKDLFDWLSKQLSGSSEFSDAIH 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKAAEACI EILR GQE IEKNLKDIQGPALAL+LER++ G
Sbjct: 1021 LLKPASSAMTDKSSDVRKAAEACISEILRVCGQEMIEKNLKDIQGPALALVLERVRPAGG 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q +SMGP+SK+S KV K+ASNG+SKH NR+IS+RVIP KG++PE MS
Sbjct: 1081 FQGLSFESFESTKTISMGPSSKTSVKVGKAASNGISKHANRSISARVIPMKGSKPEPTMS 1140
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
QD AVQSQALLNVKDSNKEDRERMVVRRFKFE+PR+EQ+Q+LE+DMMKYFREDL+RRLL
Sbjct: 1141 FQDRAVQSQALLNVKDSNKEDRERMVVRRFKFEEPRMEQVQDLESDMMKYFREDLNRRLL 1200
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEML KALPSI K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLP+LFD
Sbjct: 1201 SPDFKKQVDGLEMLHKALPSIGKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPDLFD 1260
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
LRDE Y+L+ESEAA+FLPCL+EK GHNIEKVREKMRELTKQIV YSA K+ PYILEGL
Sbjct: 1261 RLRDEAYTLSESEAAIFLPCLIEKLGHNIEKVREKMRELTKQIVQAYSAAKSFPYILEGL 1320
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYK
Sbjct: 1321 RSKNNRTRIECADLVGFLIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYK 1380
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWR++GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAE
Sbjct: 1381 ILGEDIWRFLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAE 1440
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++SQSVSGP + R+NYG ELH+E +MPRAL SV+GP DWNEALDIISFGSPEQSV
Sbjct: 1441 QSGELSQSVSGPIIARKNYGTQELHMEGHMMPRALVSVNGPADWNEALDIISFGSPEQSV 1500
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVL 1540
EGMKVVCHELAQATND EGS MDELVKDAD+LVSCLANKV++TFDFSLTGASSR+CKYVL
Sbjct: 1501 EGMKVVCHELAQATNDAEGSAMDELVKDADKLVSCLANKVSRTFDFSLTGASSRACKYVL 1560
Query: 1541 NTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN 1600
NTLMQTFQNK LAYAV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN
Sbjct: 1561 NTLMQTFQNKILAYAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN 1620
Query: 1601 ADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDV 1660
ADRTSSFVVLINLLRPLDP+RWPSPAS E+FA RNQ+FSDLVVKCLIKLTKVLQ+TIYDV
Sbjct: 1621 ADRTSSFVVLINLLRPLDPTRWPSPASAETFAIRNQKFSDLVVKCLIKLTKVLQTTIYDV 1680
Query: 1661 DLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID 1720
DLDRILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID
Sbjct: 1681 DLDRILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID 1740
Query: 1721 MKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAA 1780
MKPQPIILAYIDLNLETLAAARMLTST P GQ HWGDSAANN + A +SA+AQLKQELAA
Sbjct: 1741 MKPQPIILAYIDLNLETLAAARMLTSTAPVGQNHWGDSAANNSSPAAHSAEAQLKQELAA 1800
Query: 1781 IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGR 1840
IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKN AAGR
Sbjct: 1801 IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNTAAGR 1860
Query: 1841 TPSSVPMATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRI 1900
TPSS+P++TPPP+AL VSSP+ PLSPVHTNS+NDAK ++VK E TNF+LPPSY EDNR
Sbjct: 1861 TPSSLPISTPPPSALNVSSPDLQPLSPVHTNSLNDAKPLHVKPETTNFHLPPSYAEDNRA 1920
Query: 1901 GGAIASKVLPPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLIN 1960
A S+ L EN L DQRNE+ VTSGTLDAIRERMKSMQLAAA GNPD G+RPL++
Sbjct: 1921 VSAFLSRGLVSENSLGDQRNEKLIGGVTSGTLDAIRERMKSMQLAAATGNPDSGSRPLMS 1980
Query: 1961 MNDNVNNGLSSQS-RSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2015
MN+N+NNGLSSQ R+ D +ENP VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1981 MNENLNNGLSSQILRAPDSTGMENPLHSGVLPMDEKALSGLQARMERLKSGSLEPL 2036
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115548|ref|XP_002317062.1| microtubule organization protein [Populus trichocarpa] gi|222860127|gb|EEE97674.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3462 bits (8976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1701/2029 (83%), Positives = 1846/2029 (90%), Gaps = 18/2029 (0%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLA+LC SI DPKD+R+RE PLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLASLCVSIFDPKDSRLREFAPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAV+ FLD MEKAIKNKV+KAVVPAIDVMFQALSEFGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVEAFLDAMEKAIKNKVSKAVVPAIDVMFQALSEFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+IL EKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILLEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE GPG SEE D P EIDEY+L+DPVDIL+PLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEPEGVSEVAGPGQSEEVAPDAPQEIDEYDLMDPVDILSPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR+HF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRSHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV--VEDVKTSVKNKVPL 418
SGSSRFLLPVLLEKLKEKKPT+ ESLTQTLQAMHKAGC NL D+ VE VKT+VKNKVPL
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTESLTQTLQAMHKAGCSNLADIFAVEYVKTAVKNKVPL 420
Query: 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
VRSLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFSVLAA+AK VGM
Sbjct: 421 VRSLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSVLAAVAKMVGM 480
Query: 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538
RPLERS+EKLDDVRR KLSEMIAGSG VA +S VQT+ GS+ SVE SESSFV+KSA
Sbjct: 481 RPLERSLEKLDDVRRKKLSEMIAGSGDGVAAVATSGTVQTARGSMSSVETSESSFVKKSA 540
Query: 539 ASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIES 596
ASMLSGK+P AAPA+KK P K A K DG+G+ ETS+ E PEDVEP+EMSLEEIE+
Sbjct: 541 ASMLSGKKPAPAAPANKKAAPTKSGASKKVDGAGRPETSRALEPPEDVEPAEMSLEEIET 600
Query: 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKN 656
RLGSLI ADT+ QLKSAVWKERLEAISSL++QVE +QN +QSVEIL+RL+C +PGW+EKN
Sbjct: 601 RLGSLIQADTISQLKSAVWKERLEAISSLKEQVEGLQNCNQSVEILIRLLCAIPGWNEKN 660
Query: 657 VQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG 716
VQVQQQ IEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRA+AMKCLTTF+EAVGPG
Sbjct: 661 VQVQQQFIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAYAMKCLTTFTEAVGPG 720
Query: 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
F+F+RLYKIMK+HKNPKVLSEGILWMV A++DFGVSHLKLKDLIDFCKDTGLQSS AA+R
Sbjct: 721 FVFDRLYKIMKEHKNPKVLSEGILWMVLAIDDFGVSHLKLKDLIDFCKDTGLQSSVAASR 780
Query: 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTS 835
NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG + +PKKTVR SES +
Sbjct: 781 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGASAIPKKTVRTSESMT 840
Query: 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895
VS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP GTGE
Sbjct: 841 CVSGGGLDSLPREDISGKVTPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPNGTGE 900
Query: 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955
LFG LRGRLYDSNKNL+M L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC
Sbjct: 901 LFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 960
Query: 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015
L LD+W+AAVHLDKM+PY+T AL ++KLGAEGRKDLFDWLSKQL+GLS FPDA HLLK
Sbjct: 961 ALNTLDSWVAAVHLDKMIPYITAALFESKLGAEGRKDLFDWLSKQLSGLSEFPDAIHLLK 1020
Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ- 1074
PA AMTDKS+DVRKAAEACI EILR GQE IE+NLKDI GPALAL+LER++ Q
Sbjct: 1021 PAGSAMTDKSADVRKAAEACISEILRVCGQEMIERNLKDIHGPALALVLERVRPASVYQE 1080
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
+SMGP+SK+SSKV K+ASNG+SKH NR+ISSRVIPTKG++PE MS+QD AVQ
Sbjct: 1081 SFESTKTISMGPSSKTSSKVGKAASNGISKHSNRSISSRVIPTKGSKPEPAMSIQDRAVQ 1140
Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
SQALLNVKDSNKEDRERMVVRRFKFE+PR+EQIQ+LE DMMKY REDL+RRLLS DFKKQ
Sbjct: 1141 SQALLNVKDSNKEDRERMVVRRFKFEEPRMEQIQDLEGDMMKYLREDLNRRLLSLDFKKQ 1200
Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
VDGLEMLQKALPSI +IIEVLDILL+WFVLQFCKSNTTCLLKVLEFLP LFD LRDE Y
Sbjct: 1201 VDGLEMLQKALPSIGNEIIEVLDILLKWFVLQFCKSNTTCLLKVLEFLPALFDLLRDEAY 1260
Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
+L+ESEAA+FLPCL+EK GHNIEKVREKMREL KQI++ YSATK+ PYILEGLRSKNNRT
Sbjct: 1261 TLSESEAAIFLPCLIEKLGHNIEKVREKMRELAKQILHAYSATKSFPYILEGLRSKNNRT 1320
Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
RIEC DLVGFLID HGAEISGQLKSLQIVASLTAERDGEIRKAALN LATGYKILGEDIW
Sbjct: 1321 RIECADLVGFLIDQHGAEISGQLKSLQIVASLTAERDGEIRKAALNALATGYKILGEDIW 1380
Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
RY+GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAEQSG+VSQ
Sbjct: 1381 RYLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAEQSGEVSQ 1440
Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
SVSGP L R+N+G EL VER IMPRAL S SGPTDWNEALDIISF SPEQSVEGMKVVC
Sbjct: 1441 SVSGPILARKNFGTQELQVERHIMPRALTSASGPTDWNEALDIISFSSPEQSVEGMKVVC 1500
Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
HELAQAT+D EGSVMDELVKDADRLVSCLANKVA+TFDFSLTGASSRSCKYVLNTLMQTF
Sbjct: 1501 HELAQATSDEEGSVMDELVKDADRLVSCLANKVARTFDFSLTGASSRSCKYVLNTLMQTF 1560
Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1607
QNK LA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF
Sbjct: 1561 QNKTLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1620
Query: 1608 VVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1667
VLINLLRPLDPSRWPSPAS E+FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRIL+
Sbjct: 1621 DVLINLLRPLDPSRWPSPASTETFAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILR 1680
Query: 1668 SIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPII 1727
SIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGA+IKGHLSMVPIDMKPQPII
Sbjct: 1681 SIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGASIKGHLSMVPIDMKPQPII 1740
Query: 1728 LAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGD 1787
LAYIDLNLETLAAARMLTST P GQ HWGDSAANN + AT+SA+AQLKQELAAIFKKIGD
Sbjct: 1741 LAYIDLNLETLAAARMLTSTAPVGQNHWGDSAANNSSPATHSAEAQLKQELAAIFKKIGD 1800
Query: 1788 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1847
KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKN AAGRTPSS+PM
Sbjct: 1801 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNTAAGRTPSSLPM 1860
Query: 1848 ATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASK 1907
+TPPP+A VSSP+ PLSPVHTNS+ND+K ++ K E TNF+LPPSY+ED GAI S+
Sbjct: 1861 STPPPSAPNVSSPDLQPLSPVHTNSLNDSKPLHAKPEATNFHLPPSYSED----GAILSR 1916
Query: 1908 VLPPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNN 1967
EN L DQRNE+ VTSGTLDAIRERMKSMQLAA AG PD G+RPL+++NDN+NN
Sbjct: 1917 GFVSENSLGDQRNEKLISGVTSGTLDAIRERMKSMQLAATAGLPDSGSRPLMSVNDNLNN 1976
Query: 1968 GLSSQS-RSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2015
GLSS + D A +ENP G VLP+DEKALSGLQARMERLKSG++EPL
Sbjct: 1977 GLSSLILHAPDSAGMENPVLGGVLPLDEKALSGLQARMERLKSGSLEPL 2025
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533943|ref|XP_003535517.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3346 bits (8677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1666/2040 (81%), Positives = 1814/2040 (88%), Gaps = 30/2040 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIAYL+AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW
Sbjct: 61 VADSNAPVQEKALDALIAYLRAADADASRYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAVD FLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 IELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKD VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE QE +SE VGPGP EES D P EIDEYELVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEQEAVSEVVGPGPCEESGNDAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRI+PGDF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
S SSRFLLPVLLEKLKEKKP +AE+L QTLQAMHKAGC++L+D+VE VKT+ KNK
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALAEALMQTLQAMHKAGCISLIDIVEGRFPPYVKTATKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTL WVTFCIETS+K + KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKS
Sbjct: 421 VPLVRSLTLTWVTFCIETSNKVVITKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMI+GS V +S+A VQ + S S E SES V+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAETSESVLVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVK--PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593
+SAA MLSGKRPV + PA KK G VK + K DG + + K E PEDVEP+EMSLEE
Sbjct: 541 RSAAGMLSGKRPVQSVPAVKKVGVVKLGTNKKTDGVPQVKALKSVEPPEDVEPTEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IESR+GSLI +DT+ LKSAVWKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGW
Sbjct: 601 IESRIGSLIESDTITLLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWG 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI ++++TATKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAV
Sbjct: 661 EKNVQVQQQVIEVITHISSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGFIFERLYKIMK+HKNPKVLSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS A
Sbjct: 721 GPGFIFERLYKIMKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
ATRNA+IK LG LH+FVGPDIKGFL DVKPALLSALD EYEKNPFEG + V K+TVRA +
Sbjct: 781 ATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRAKD 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
S+S+V +GG D LPREDISGK +PTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ G
Sbjct: 841 SSSTVVAGGLDSLPREDISGKISPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRL DSNKN+VMA+L +G VASAMG AVEK+SKG+LSDILKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLLDSNKNIVMASLTAIGNVASAMGQAVEKASKGILSDILKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
REC L LDAWLAAVHLDKMVPY+ AL D+KLGAEGRKDLFDWLS+QL+GLS F +AA
Sbjct: 961 RECVLNTLDAWLAAVHLDKMVPYIAIALMDSKLGAEGRKDLFDWLSRQLSGLSSFAEAAQ 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKA+EACI EILR G E IEK +KDI GPAL LI+E++K GA
Sbjct: 1021 LLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLIVEKLKPYGA 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q VS+G SK +K KS +NGVSKHGNRA+SSRV+ TKGA+ ESI S
Sbjct: 1081 FQGTFFESFESGRAVSVGAISK--AKAGKSTANGVSKHGNRAVSSRVVATKGAKSESI-S 1137
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
VQD AVQSQALLN+KDSNKEDRERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLL
Sbjct: 1138 VQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLL 1197
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL D
Sbjct: 1198 SADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLD 1257
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
TL+DEGYSLTESE AVFLPCLVEK GHNIEKVREKMRELTKQ V YSA K PYILEGL
Sbjct: 1258 TLKDEGYSLTESEGAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSACKCFPYILEGL 1317
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGF+IDHHGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYK
Sbjct: 1318 RSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYK 1377
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARA RRSVRENGSD+AE
Sbjct: 1378 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAISRRSVRENGSDVAE 1437
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++++S++GP ++R+NYG + +++R +MPR + SGPTDWNEALDIISFGSPEQSV
Sbjct: 1438 QSGEMTRSLAGP-ILRKNYGQPDSNIDRQLMPRPMTVASGPTDWNEALDIISFGSPEQSV 1496
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLT-GASSRSCKYV 1539
+GMKV+CHELAQAT+DPEGS MDELVKDADRLVSCLANKVA+TFDFSLT GASSRSCKYV
Sbjct: 1497 DGMKVICHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYV 1556
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILD 1599
LNTLMQTFQNKRLA+AV+ESTLDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKILD
Sbjct: 1557 LNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILD 1616
Query: 1600 NADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYD 1659
NADRTSSFVVLINLLRPLD SRWPSPASNES A+RNQ+FSDLVVKCLIKLTKVLQSTIYD
Sbjct: 1617 NADRTSSFVVLINLLRPLDSSRWPSPASNESLASRNQKFSDLVVKCLIKLTKVLQSTIYD 1676
Query: 1660 VDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1719
VDLDRILQSIH+YLQ+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI
Sbjct: 1677 VDLDRILQSIHLYLQDLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1736
Query: 1720 DMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELA 1779
D KPQPIILAYI+LNLETLAAARMLT++GPGGQ HWGDSA NN S T+SADAQLKQELA
Sbjct: 1737 DAKPQPIILAYIELNLETLAAARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELA 1796
Query: 1780 AIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1839
AIFKKIG+KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG
Sbjct: 1797 AIFKKIGEKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1856
Query: 1840 RTPSSVPMATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPP-SYTEDN 1898
RTPSS+PM TPPPA+L +SSP+FAPLSPV+ N + DAK +NVK EPTNFNLPP SY E+N
Sbjct: 1857 RTPSSLPMPTPPPASLNISSPDFAPLSPVNANPLGDAK-LNVKPEPTNFNLPPSSYNEEN 1915
Query: 1899 RIGGAIASKVLPPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPL 1958
R AI S+ L + L DQRN+RF VTSGTLDAIRERMKSMQLAAAAG+ + G R L
Sbjct: 1916 RAVNAITSRALNSDYTLGDQRNDRFMTGVTSGTLDAIRERMKSMQLAAAAGSTESGGRHL 1975
Query: 1959 INMNDNVNNGLSSQSR---SSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2015
+ NDN N GL S+ +S+ EN G VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1976 TSANDNFNQGLPPPSQIPHASEHVGTENTMHGGVLPMDEKALSGLQARMERLKSGSLEPL 2035
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574625|ref|XP_003555446.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3330 bits (8635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1667/2040 (81%), Positives = 1820/2040 (89%), Gaps = 30/2040 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
V DSNAPVQ+KALDALIAYL+AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW
Sbjct: 61 VTDSNAPVQEKALDALIAYLRAADADAARYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAVD FLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 IELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKD VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE QE +SE VGPGPSEES D P EIDEYELVDPVDIL PLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEQEAVSEVVGPGPSEESGNDAPQEIDEYELVDPVDILIPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRI+PGDF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
S SSRFLLPVLLEKLKEKKP +AE+LTQTLQAMHKAGC++L+D+VE VKT+ KNK
Sbjct: 361 SSSSRFLLPVLLEKLKEKKPALAEALTQTLQAMHKAGCISLIDIVEGRFPSYVKTATKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTL WVTFCIETS+K ++KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKS
Sbjct: 421 VPLVRSLTLTWVTFCIETSNKGVIMKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMI+GS V +S+A VQ + S S E+SES+FV+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAESSESAFVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEE 593
+SAA MLSGKRPV + P +KKGG VK K DG + + SK E PEDVEP+EMSLEE
Sbjct: 541 RSAAGMLSGKRPVQSVPVAKKGGVVKSGTNKKTDGVPQVKASKSVEPPEDVEPTEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IESR+GSLI +DT+ QLKSAVWKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGWS
Sbjct: 601 IESRIGSLIQSDTITQLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWS 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI ++ +TATKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAV
Sbjct: 661 EKNVQVQQQVIEVITHIGSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGFIFERLYKI+K+HKNPKVLSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS A
Sbjct: 721 GPGFIFERLYKILKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
ATRNA+IK LG LH+FVGPDIKGFL DVKPALLSALD EYEKNPFEG + V K+TVRAS+
Sbjct: 781 ATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRASD 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
S+S+ +GG D LPREDISGK TPTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ G
Sbjct: 841 SSSTAVAGGLDSLPREDISGKITPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRL DSNKN+VMA+L T+G VASAMG AVEK+SKG+LSD+LKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLVDSNKNIVMASLTTIGNVASAMGQAVEKASKGILSDVLKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
REC L LDAWLAAVHLDKMV Y+ AL D+KLGAEGRKDLFDWLSKQL+ LS F +AA
Sbjct: 961 RECVLNTLDAWLAAVHLDKMVSYIAIALMDSKLGAEGRKDLFDWLSKQLSELSSFAEAAQ 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKA+EACI EILR G E IEK +KDI GPAL L+LE++K GA
Sbjct: 1021 LLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLVLEKLKPYGA 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q VS+G TSK +K KS +NGVSKHGNRA+SSRV+ TKG + ESI S
Sbjct: 1081 FQGTFFESFESGRAVSVGATSK--AKAGKSTANGVSKHGNRAVSSRVVATKGTKSESI-S 1137
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
VQD AVQSQALLN+KDSNKEDRERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLL
Sbjct: 1138 VQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLL 1197
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL D
Sbjct: 1198 SADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLD 1257
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
TL+DEGYSLTESE AVFLPCLVEK GHNIEKVREKMRELTKQ V YSA+K PYILEGL
Sbjct: 1258 TLKDEGYSLTESEVAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSASKCFPYILEGL 1317
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGF+IDHHGAEISGQLKSLQIVASLTAERDGE RKAALN LATGYK
Sbjct: 1318 RSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNALATGYK 1377
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARA LRRSVRENGSD+AE
Sbjct: 1378 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARANLRRSVRENGSDVAE 1437
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++++S++GP ++R+NY + +++R +MP + SGPTDWNEALDIISFGSPEQSV
Sbjct: 1438 QSGEMARSLTGP-MLRKNYAQPDSNIDRQLMPHPMTVASGPTDWNEALDIISFGSPEQSV 1496
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLT-GASSRSCKYV 1539
+GMKVVCHELAQAT+DPEGS MDELVKDADRLVSCLANKVA+TFDFSLT GASSRSCKYV
Sbjct: 1497 DGMKVVCHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYV 1556
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILD 1599
LNTLMQTFQNKRLA+AV+ESTLDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKILD
Sbjct: 1557 LNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILD 1616
Query: 1600 NADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYD 1659
NADRTSSFVVLINLLRPLD SRWPSPA NES A+RNQ+FSDLVVKCLIKLTKVLQSTIYD
Sbjct: 1617 NADRTSSFVVLINLLRPLDSSRWPSPALNESLASRNQKFSDLVVKCLIKLTKVLQSTIYD 1676
Query: 1660 VDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1719
VDLDRILQSIH+YLQ+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI
Sbjct: 1677 VDLDRILQSIHLYLQDLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1736
Query: 1720 DMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELA 1779
D KPQPIILAYI+LNLETLAAARMLT++GPGGQ HWGDSA NN S T+SADAQLKQELA
Sbjct: 1737 DAKPQPIILAYIELNLETLAAARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELA 1796
Query: 1780 AIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1839
AIFKKIG+KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG
Sbjct: 1797 AIFKKIGEKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1856
Query: 1840 RTPSSVPMATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPP-SYTEDN 1898
RTPSS+PM TPPPA+L +SSP+FAPLSPV+TN + DAK +NVK +PTNFNLPP SY E+N
Sbjct: 1857 RTPSSLPMPTPPPASLNISSPDFAPLSPVNTNPLGDAK-LNVKPDPTNFNLPPSSYNEEN 1915
Query: 1899 RIGGAIASKVLPPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPL 1958
R AI S+ L + L DQRN+RF VTSGTLDAIRERMKSMQLAAAAG+ + G R L
Sbjct: 1916 RAVNAITSRALNSDYTLGDQRNDRFMTGVTSGTLDAIRERMKSMQLAAAAGSTESGGRHL 1975
Query: 1959 INMNDNVNNGLSSQSR---SSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2015
+ NDN+N+GL S+ +S+ EN G VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1976 TSANDNLNHGLPPPSQIPHASEHVGTENTMHGGVLPMDEKALSGLQARMERLKSGSLEPL 2035
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19912731|dbj|BAB88648.1| microtubule bundling polypeptide TMBP200 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 3260 bits (8453), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1600/2031 (78%), Positives = 1805/2031 (88%), Gaps = 21/2031 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSE+EKLLKEAKKLPW++R HKNWKVRN+ANIDLAA+CDSITDPKD R+RE GPLF+KT
Sbjct: 1 MSEDEKLLKEAKKLPWDERFAHKNWKVRNDANIDLAAVCDSITDPKDPRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALI YLKAADADAGRYAKEVCDA+ KCLTGRPKTVEKAQ VF+LW
Sbjct: 61 VADSNAPVQEKALDALICYLKAADADAGRYAKEVCDAVVVKCLTGRPKTVEKAQMVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAV+ FLD MEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ
Sbjct: 121 IELEAVEAFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWI K+ VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWISKETVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E++S+ V GPSEES ADVP IDEY+LVDPVDIL PLEK+GFWEGVKA KWS
Sbjct: 241 QDKEPELEVVSDAVAAGPSEESAADVPQRIDEYDLVDPVDILIPLEKTGFWEGVKAAKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTK+IAPGDF E+CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKKIAPGDFAEICRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
SGSSRFLLPVLLEKLKEKKPT+ ++LTQTLQAMHK+GCL L D+VEDVKT+ KNKVPLVR
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTDALTQTLQAMHKSGCLILTDIVEDVKTATKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
SLTLNWVTFCIETS+KA +LK HK+YVPICME LNDGTPEVRDAAFS LAA+AKSVGMRP
Sbjct: 421 SLTLNWVTFCIETSNKAVILKAHKEYVPICMESLNDGTPEVRDAAFSALAAVAKSVGMRP 480
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
LE+S+EKLDDVR+ KLSEMI GSGGD + +SS V +SGG + S +AS S V++SAAS
Sbjct: 481 LEKSLEKLDDVRKKKLSEMIGGSGGDPVSTSSSGAVPSSGGIMSSTQASTGSLVKRSAAS 540
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
MLSGK+PV AAP SKKG K K DG+ + + SK E EDVEP+EMSLEEIES+L
Sbjct: 541 MLSGKKPVQAAPPSKKGASAKSGTNKRGDGATQLKASKPVEV-EDVEPAEMSLEEIESKL 599
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
GSLI +T+ QLKSAVWKERLEAISS ++QVEA++ LD SVEILVRL+C +PGWSEKNVQ
Sbjct: 600 GSLIQPETITQLKSAVWKERLEAISSFKEQVEALKELDPSVEILVRLLCAVPGWSEKNVQ 659
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQ VI++IN++A+TA+K+PKKCVVLCL G+SERVADIKTRA AMKCLTTF EAVGPGF+
Sbjct: 660 VQQLVIDIINHIASTASKYPKKCVVLCLQGVSERVADIKTRAQAMKCLTTFCEAVGPGFV 719
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMV+AV+DFGVSHLKLKDLIDFCKDTGLQSSAAATRNA
Sbjct: 720 FERLYKIMKEHKNPKVLSEGILWMVTAVDDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 779
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSV 837
TIKL+GALHKFVGPDIKGFL+DVKPAL+SALDAEY+KNPFEG +V PKKTV+ S++ S+
Sbjct: 780 TIKLIGALHKFVGPDIKGFLSDVKPALISALDAEYDKNPFEGASVAPKKTVKTSDA-PSL 838
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSGG D LPREDISGK TP L+K LES DWK RLESIE VNKILEEANKRIQP GTGELF
Sbjct: 839 SSGGLDSLPREDISGKITPALLKGLESSDWKARLESIETVNKILEEANKRIQPTGTGELF 898
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
G LRGRL SNKNLV+ATL T+G VASAMGPAVEKSSKG+LSDILKCLGDNKKHMRECTL
Sbjct: 899 GALRGRLCYSNKNLVIATLSTVGGVASAMGPAVEKSSKGILSDILKCLGDNKKHMRECTL 958
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
LD+WLAAVHLDKMVPY+T ALTDAKLGAEGRKDLFDWLSKQLTG+ FPDA HLLKP
Sbjct: 959 NTLDSWLAAVHLDKMVPYITGALTDAKLGAEGRKDLFDWLSKQLTGMKEFPDAVHLLKPV 1018
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ AMTDKS+DVRKAAEAC E+LR GQE + KNLKDIQGPALA+++ER++ G Q
Sbjct: 1019 ASAMTDKSADVRKAAEACFGELLRVCGQEMVSKNLKDIQGPALAIVVERLRPYGVLQETF 1078
Query: 1075 -----VSMGPTSKSSSKVPKSA--SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
S G TSK SK+ KS + S+HGNRA +SR IPT+ +R E++MSVQD +VQ
Sbjct: 1079 DLGRTSSTGTTSKVGSKIGKSTGPAERASRHGNRAGASRAIPTRNSRQETLMSVQDISVQ 1138
Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
SQAL+NVKDS+K +RER+VVRRFKFE+PR+EQIQ+LE+D+MKYFREDLHRRLLSTDFKKQ
Sbjct: 1139 SQALINVKDSHKGERERIVVRRFKFEEPRLEQIQDLESDLMKYFREDLHRRLLSTDFKKQ 1198
Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
VDG+EMLQKALPSI K++IEVLDI+LRWFVL+FC+SNT+CLLKVLEFLPELF+ LR+EGY
Sbjct: 1199 VDGIEMLQKALPSIAKELIEVLDIVLRWFVLRFCESNTSCLLKVLEFLPELFEMLRNEGY 1258
Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
+TE+EAA+FLPCLVEKSGHNIEKVREKMRELTKQI++ YSA KT PYILEGLRS++NRT
Sbjct: 1259 MMTEAEAAIFLPCLVEKSGHNIEKVREKMRELTKQIIHAYSAAKTFPYILEGLRSRSNRT 1318
Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
RIEC DLVG+L+D+H AEI GQLKSL+ VA+LTAERDGE RKAALNTLATGYKILG+DIW
Sbjct: 1319 RIECADLVGYLLDNHEAEIGGQLKSLKDVANLTAERDGETRKAALNTLATGYKILGDDIW 1378
Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
+Y+GKLT+AQ+SMLDDRFKWK REM+K++EG+PGEARAALRRSVR+NG+DIAE SG+VS+
Sbjct: 1379 KYLGKLTEAQRSMLDDRFKWKAREMDKRREGRPGEARAALRRSVRDNGTDIAEPSGEVSR 1438
Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
S++GP L R Y ++E +ER + R ++ GP+DWNEALDII+ SPEQSVEGMKVVC
Sbjct: 1439 SLAGPILNRDIYNNTEFPMERIVNLRPVSGTMGPSDWNEALDIIASDSPEQSVEGMKVVC 1498
Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
H LA ATNDPEGS MD++VKDAD+LVSCLANKVA+TFDFSL GASSRSCKYVLNTLMQTF
Sbjct: 1499 HLLAVATNDPEGSAMDDIVKDADKLVSCLANKVARTFDFSLMGASSRSCKYVLNTLMQTF 1558
Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1607
QN+ LA+AV+ESTLD LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNADRTSSF
Sbjct: 1559 QNRTLAHAVRESTLDILITELLLWLLDERVPRMDDGSQLLKALNVLMLKILDNADRTSSF 1618
Query: 1608 VVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1667
VVLI LLRPLDPSRWPSPA++ES RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQ
Sbjct: 1619 VVLIKLLRPLDPSRWPSPATDESLVIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1678
Query: 1668 SIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPII 1727
SIH+YLQELGM+EIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPIDM+P PII
Sbjct: 1679 SIHIYLQELGMDEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDMQPPPII 1738
Query: 1728 LAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGD 1787
LAYIDLNL+TLAAARMLT + P GQTHWGDSAANNP AT++ADAQLKQELAAIFKKIGD
Sbjct: 1739 LAYIDLNLQTLAAARMLTPSVP-GQTHWGDSAANNPAPATHNADAQLKQELAAIFKKIGD 1797
Query: 1788 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1847
KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM
Sbjct: 1798 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1857
Query: 1848 ATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASK 1907
+TPPP++L +SSP+F LSPV+TN +NDAKS+N K EP+ F+LPPSY ED+R G A+ S+
Sbjct: 1858 STPPPSSLNLSSPKFGKLSPVNTNPLNDAKSVNNKVEPSQFSLPPSYGEDDRGGNALLSR 1917
Query: 1908 VLPPE-----NPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMN 1962
L E + L +QRN+R VTSGTL+AIRERMKSM LAA GNPDP +R L++MN
Sbjct: 1918 GLSSEHLELRHQLGEQRNDRLPSGVTSGTLEAIRERMKSMSLAATGGNPDPSSRTLMSMN 1977
Query: 1963 DNVNNGLSSQSRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIE 2013
NV++ +S+Q+ + +S+EN Q VLPMDEKALSGLQARMERLKSG++E
Sbjct: 1978 GNVSHMVSTQAPGIEHSSIENSIQSGVLPMDEKALSGLQARMERLKSGSME 2028
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434204|ref|XP_004134886.1| PREDICTED: protein MOR1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3227 bits (8368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1604/2031 (78%), Positives = 1785/2031 (87%), Gaps = 42/2031 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLAA+CDSITDPKD+R+RE GPLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLSHKNWKVRNEANIDLAAVCDSITDPKDSRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIAYL+AADADAGR+AKE CDAI AKCLTGRPKTVEKAQAVFMLW
Sbjct: 61 VADSNAPVQEKALDALIAYLRAADADAGRFAKETCDAIVAKCLTGRPKTVEKAQAVFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEA DVFLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAADVFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV+G+ARP+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVTGSARPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE +E SE VG GPSEES ADVP EIDEY+LVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEKEDTSEAVGTGPSEESVADVPQEIDEYDLVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAEL+KLAST++IAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNL+RGLR +F
Sbjct: 301 ERKEAVAELSKLASTRKIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLSRGLRANF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
S SSRFLLPVLLEKLKEKKP + ESLTQTLQAMHKAGCL+L DV+EDVKT+ KNKVPLVR
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALMESLTQTLQAMHKAGCLSLSDVIEDVKTASKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
S TL+WVTFCIETS+KA +LKVHK+YVPI ME LNDGTPEVRDAAF LAA+AK
Sbjct: 421 SSTLSWVTFCIETSNKAVILKVHKEYVPIFMESLNDGTPEVRDAAFLALAAVAK------ 474
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
IE L + ++ + + V S+ FV+KSAAS
Sbjct: 475 ----IESLSLSLSSGFGMLVPIYFAFIVN-----------NQLDLVLDSDGLFVKKSAAS 519
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGK------QETSKLTEAPEDVEPSEMSLEEI 594
MLSGKRP AAP+SKKG K K G ++SK E PEDVEP+EMSLEE+
Sbjct: 520 MLSGKRPAQAAPSSKKGNLAKSGTNKKADGSVPSGAPPKSSKPIEVPEDVEPAEMSLEEV 579
Query: 595 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 654
ES+LGSLI ADTV QLKS VWKERLEAISSL+QQVE +++L+ SVEILVRL+C++PGWSE
Sbjct: 580 ESKLGSLIEADTVSQLKSTVWKERLEAISSLKQQVEGLEDLNPSVEILVRLLCIIPGWSE 639
Query: 655 KNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG 714
KNVQVQQQVIEVI Y+A+TA KFPKKC+VLCL GISERVADIKTR AMKCLTTFSEAVG
Sbjct: 640 KNVQVQQQVIEVITYIASTAKKFPKKCIVLCLSGISERVADIKTRVQAMKCLTTFSEAVG 699
Query: 715 PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAA 774
PGFIFERL+KIMK+HKNPKVLSEG+LWMVSAVEDFG+S LKLKDLIDFCK+TGLQSSAAA
Sbjct: 700 PGFIFERLFKIMKEHKNPKVLSEGLLWMVSAVEDFGISLLKLKDLIDFCKETGLQSSAAA 759
Query: 775 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT-VVPKKTVRASES 833
TRN TIKLLG +HKFVGPD+KGFL+DVKPALL+A+D E+EKNPFEGT PK+TVRA E
Sbjct: 760 TRNVTIKLLGCVHKFVGPDLKGFLSDVKPALLTAIDTEFEKNPFEGTAAAPKRTVRAEEL 819
Query: 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT 893
TSS S G+DGLPREDISGK TPTL+K+ ESPDWKVRLESIEAVNK+LEEANKRIQP GT
Sbjct: 820 TSSTSVSGTDGLPREDISGKITPTLLKNFESPDWKVRLESIEAVNKMLEEANKRIQPTGT 879
Query: 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 953
+L G LRGRLYDSNKNLVMATL T+G VASAMGP+VEKS KGVLSD+LKCLGDNKKHMR
Sbjct: 880 SDLLGALRGRLYDSNKNLVMATLATIGNVASAMGPSVEKSGKGVLSDVLKCLGDNKKHMR 939
Query: 954 ECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013
E TLT LDAWLAAVH DKM+PY+ AL D K+ AEGRKDL +WLS++L+G++ DA L
Sbjct: 940 EATLTALDAWLAAVHFDKMIPYMILALVDNKVSAEGRKDLLEWLSRKLSGINDSSDAIQL 999
Query: 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK----- 1068
LKPA A+TDKSSDVRKAAE+CI EILR G QE +EK +KDI GP L+L+LER++
Sbjct: 1000 LKPACSALTDKSSDVRKAAESCITEILRVGRQEAVEKVVKDISGPGLSLVLERLRPYGAL 1059
Query: 1069 ---LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
+ A QV+ SK++ KV K+ SNGV+KHGN+AISSR +KG R ES++S D A
Sbjct: 1060 QESFDSAKQVTSSLPSKNAIKVGKATSNGVAKHGNKAISSRGTISKGNRTESLISAHDLA 1119
Query: 1126 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFK 1185
VQSQALLNVKDSNKE+RER++VR+FKFE+PRIEQIQ+LENDMMKYFREDL RR+LSTDFK
Sbjct: 1120 VQSQALLNVKDSNKEERERIIVRKFKFEEPRIEQIQDLENDMMKYFREDLQRRMLSTDFK 1179
Query: 1186 KQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDE 1245
KQVDG+EMLQKAL SI KD+IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+ L+DE
Sbjct: 1180 KQVDGIEMLQKALASIGKDVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFEILKDE 1239
Query: 1246 GYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNN 1305
GY + ESEAA+FLPCL+EK GHNIEKV+EKMRELTKQI+ YSATK PYILEGLRSKNN
Sbjct: 1240 GYCINESEAAIFLPCLIEKLGHNIEKVKEKMRELTKQIIQAYSATKMFPYILEGLRSKNN 1299
Query: 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGED 1365
RTRIEC DL+GFLID++G+EISGQL+SLQ+VASLTAERDGEIRKAALNTLATGYKILGE+
Sbjct: 1300 RTRIECADLIGFLIDNYGSEISGQLRSLQLVASLTAERDGEIRKAALNTLATGYKILGEE 1359
Query: 1366 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1425
+WRYVGKLTDAQ+SMLDDRFKWKVREMEKKKEGKPGEARAA+RR +RE S++AEQSG+V
Sbjct: 1360 VWRYVGKLTDAQRSMLDDRFKWKVREMEKKKEGKPGEARAAMRRPLREYESEVAEQSGEV 1419
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKV 1485
S+S+SG R+NYG SELH+ER +P+ L + +GPTDWNEA+DIISFGSPEQSVEGMKV
Sbjct: 1420 SRSMSGTISTRKNYG-SELHMERQSVPQPLTTANGPTDWNEAMDIISFGSPEQSVEGMKV 1478
Query: 1486 VCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQ 1545
VCHELAQA++DPEGS MDEL +DADRLV CLA KVAKTFD+SLTGASSRSCKYVLNTLMQ
Sbjct: 1479 VCHELAQASSDPEGSSMDELARDADRLVLCLATKVAKTFDYSLTGASSRSCKYVLNTLMQ 1538
Query: 1546 TFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS 1605
TFQNKRLAYAV+E TLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS
Sbjct: 1539 TFQNKRLAYAVKEKTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS 1598
Query: 1606 SFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRI 1665
SFVVLINLLRPL+PSRWPS S ESFA+RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRI
Sbjct: 1599 SFVVLINLLRPLEPSRWPSTGSKESFASRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRI 1658
Query: 1666 LQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP 1725
LQSIH+YLQ LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP
Sbjct: 1659 LQSIHLYLQNLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP 1718
Query: 1726 IILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKI 1785
IILAYIDLNLETLAAARMLTSTGP GQTHWGDS ANN +S T SADAQLKQELAAIFKKI
Sbjct: 1719 IILAYIDLNLETLAAARMLTSTGPAGQTHWGDSTANNASSGTQSADAQLKQELAAIFKKI 1778
Query: 1786 GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSV 1845
GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQME+NAAAGRTPSS+
Sbjct: 1779 GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMERNAAAGRTPSSL 1838
Query: 1846 PMATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIA 1905
P++TPPPA++ SSP+FAPLSPVHTNS+ +AKS+NVK EPTNF LPPSYTEDNRI I
Sbjct: 1839 PLSTPPPASMN-SSPDFAPLSPVHTNSLTEAKSLNVKPEPTNFTLPPSYTEDNRI---IT 1894
Query: 1906 SKVLPPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNV 1965
S+ P+ L DQRN+++ VTSGTLDAIRERMKSMQLAAAAGN + G++PL+++NDN+
Sbjct: 1895 SRGPGPDYSLGDQRNDKYISGVTSGTLDAIRERMKSMQLAAAAGNHESGSKPLMSVNDNL 1954
Query: 1966 NNGLSSQ-SRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2015
+ G+ +Q S+ S+ VEN AQ VLPMDEKALSGLQARMERLKSGTIEPL
Sbjct: 1955 HPGMIAQMSQPSEHIGVENSAQAGVLPMDEKALSGLQARMERLKSGTIEPL 2005
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823359|ref|XP_002879562.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] gi|297325401|gb|EFH55821.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 3080 bits (7984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1549/2021 (76%), Positives = 1738/2021 (85%), Gaps = 54/2021 (2%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA+L DSITDPKD R+R+ G LF+KTV
Sbjct: 3 AEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASLFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIAAKCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIAAKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELTNVSGGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKKP+V E LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKPSVTEPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + SE+SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSEASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +APAS K G KKDGS + E K E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAPASKKVGTGKPGGGKKDGSVRNEGPKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +T+ QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETISQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISSKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIILALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQETIEKNLKDI GPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQETIEKNLKDIHGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK SK+ KS SNG K GNR SR +PTKG++ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVSKISKSTSNGTLKQGNR---SRAVPTKGSQ---ITSVHDIAIQSQALLNT 1134
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQI +LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1135 KDSNKEDRERVVVRRIKFEELRPEQILDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1194
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1195 QKALPSVSKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1254
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQ++ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1255 AIFLPCLAEKLGHNIEKVREKMRELMKQLIQAYSVAKTYPYILEGLRSKNNRTRIECTDL 1314
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L +VASLTAERDGE+RKAALNT+ATGYKILG+DIW+YVGKLT
Sbjct: 1315 IGYLLETCGTEIGGLLKYLNMVASLTAERDGELRKAALNTMATGYKILGDDIWKYVGKLT 1374
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWKV+EMEK++EGKPGEARAALRRSVR+NG ++AEQSGD+SQ V GP
Sbjct: 1375 DAQKSMIDDRFKWKVKEMEKRREGKPGEARAALRRSVRDNGPEVAEQSGDLSQIVPGPLF 1434
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R+NYG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1435 PRQNYGISEQILERNPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1494
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1495 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1554
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1555 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1614
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1615 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1674
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1734
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT IG
Sbjct: 1735 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSKIG 1794
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1795 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1854
Query: 1855 LGVSSPEFAPLSPVHTNSMNDAKS-MNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPEN 1913
L + SP+ LS + DAK MN +S+ YT+D R AS + P
Sbjct: 1855 LALPSPDIPSLSSL------DAKPLMNPRSD--------LYTDDIR-----ASNMNP--- 1892
Query: 1914 PLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQS 1973
V +GTLDAIRERMK+MQL A++G +P ++PL+ NDN++ ++ QS
Sbjct: 1893 ------------GVMTGTLDAIRERMKNMQL-ASSGTLEPVSKPLMPTNDNLS--MNQQS 1937
Query: 1974 RSSDRASVENP-AQGSVLPMDEKALSGLQARMERLKSGTIE 2013
+ E P VLPMDEKALSGLQARMERLK G++E
Sbjct: 1938 VPQSQMGQETPHTHPVVLPMDEKALSGLQARMERLKGGSLE 1978
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30686489|ref|NP_565811.2| microtubule organization 1 protein [Arabidopsis thaliana] gi|75250086|sp|Q94FN2.1|MOR1_ARATH RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein GEMINI POLLEN 1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1; AltName: Full=Protein RID5; AltName: Full=Protein ROOT INITIATION DEFECTIVE 5 gi|14317953|gb|AAK59871.1|AF367246_1 microtubule organization 1 protein [Arabidopsis thaliana] gi|22252950|gb|AAM94170.1| MOR1/GEM1 [Arabidopsis thaliana] gi|330254039|gb|AEC09133.1| microtubule organization 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3055 bits (7921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1534/2020 (75%), Positives = 1731/2020 (85%), Gaps = 54/2020 (2%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +A AS K G KKDGS + E SK E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK +K+ KS SNG K GNR SR +PTKG+ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1615
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1616 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1675
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1676 DLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1735
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT TIG
Sbjct: 1736 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIG 1795
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1796 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1855
Query: 1855 LGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENP 1914
L + SP+ LS + + MN +S+ YT+D R AS + P
Sbjct: 1856 LALPSPDIPSLSSLDVKPL-----MNPRSD--------LYTDDIR-----ASNMNP---- 1893
Query: 1915 LSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQSR 1974
V +GTLDAIRERMK+MQLA++ +P ++PL+ NDN++ ++ QS
Sbjct: 1894 -----------GVMTGTLDAIRERMKNMQLASS----EPVSKPLMPTNDNLS--MNQQSV 1936
Query: 1975 SSDRASVEN-PAQGSVLPMDEKALSGLQARMERLKSGTIE 2013
+ E VLPMDEKALSGLQARMERLK G++E
Sbjct: 1937 PPSQMGQETVHTHPVVLPMDEKALSGLQARMERLKGGSLE 1976
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115440677|ref|NP_001044618.1| Os01g0816400 [Oryza sativa Japonica Group] gi|75251094|sp|Q5N749.1|MOR1_ORYSJ RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1 gi|56785068|dbj|BAD82707.1| putative microtubule bundling polypeptide TMBP200 [Oryza sativa Japonica Group] gi|56785322|dbj|BAD82281.1| putative microtubule bundling polypeptide TMBP200 [Oryza sativa Japonica Group] gi|113534149|dbj|BAF06532.1| Os01g0816400 [Oryza sativa Japonica Group] gi|222619446|gb|EEE55578.1| hypothetical protein OsJ_03864 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 2880 bits (7467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1468/2032 (72%), Positives = 1714/2032 (84%), Gaps = 55/2032 (2%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE GPLFKKTV
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFKKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDAL+A+ +AADADA RYAKEVCDAI AKCLTGRPKTVEKAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALLAFQRAADADASRYAKEVCDAIVAKCLTGRPKTVEKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEA +VFL+ MEKA+KNKVAKAVVPAIDVMFQALSEFGAK++PPK+ILKMLPELFDH D
Sbjct: 123 ELEAAEVFLESMEKAVKNKVAKAVVPAIDVMFQALSEFGAKVVPPKKILKMLPELFDHPD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRASSKGLTLELCRWIGK+PVK ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASSKGLTLELCRWIGKEPVKAILFEKMRDTMKKELEAELANVSGIAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
+KEL +E++ E G SEE+ + P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 EKELEEEVVPEAAGTNNSEEAVPEAPMEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
R+DAVAELTKLASTK+IAPGDF E+CRTLKKLITDVN+AV+VEA QAIGNLA+GLRTHFS
Sbjct: 303 RRDAVAELTKLASTKKIAPGDFHEICRTLKKLITDVNLAVSVEATQAIGNLAKGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
G+SR LLPVLLEKLKEKKPT+ E+L+QTLQAMHK+GC+ L+DV+EDV+ +VKNKVPLVRS
Sbjct: 363 GNSRVLLPVLLEKLKEKKPTMTEALSQTLQAMHKSGCITLLDVIEDVRVAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
LTLNWV FCIETS+KA VLK+HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PL
Sbjct: 423 LTLNWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLS+MI GS D +GT +A +G + E +SS +R+SAASM
Sbjct: 483 ERSLEKLDDVRKKKLSDMI-GSASDTTSGTVAA--SNTGVGTSAREVMDSSSMRRSAASM 539
Query: 542 LSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAP--EDVEPSEMSLEEIESRL 598
LSGK+PV A PA+KK GP K +AKK G Q SK + AP EDVEPSEMSLEEIE +L
Sbjct: 540 LSGKKPVQAVPATKKSGPAKSATAKKTDGGPQ--SKASAAPVIEDVEPSEMSLEEIEEKL 597
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
S++ ++T+ QLKS VWKERLEAIS L+Q+VE++ LD+S E+LVRL+C +PGWSEKNVQ
Sbjct: 598 SSVVKSETISQLKSTVWKERLEAISMLKQEVESLTELDKSAELLVRLLCAVPGWSEKNVQ 657
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQVIEV Y+A+T +FPK+CVVLCLLGISERVADIKTR HAMKCLT F EAVGPGF+
Sbjct: 658 VQQQVIEVSTYIASTVNRFPKRCVVLCLLGISERVADIKTRGHAMKCLTAFCEAVGPGFV 717
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMVSAVEDFG+S+LKLKD IDFCKD GLQSSAAATRNA
Sbjct: 718 FERLYKIMKEHKNPKVLSEGILWMVSAVEDFGISNLKLKDTIDFCKDIGLQSSAAATRNA 777
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV-VPKKTVRASESTSSV 837
TIKL+G LHKFVGPDIKGFL+DVKPALLS LDAEYEKNPFEGT PK+TVRA+++ SS
Sbjct: 778 TIKLIGVLHKFVGPDIKGFLSDVKPALLSTLDAEYEKNPFEGTASAPKRTVRAADAVSSA 837
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSG SDGLPREDIS K TPTL+K+L SPDWK+RLESI+AV+KI+EEA+KRIQP GT ELF
Sbjct: 838 SSGTSDGLPREDISAKITPTLLKNLGSPDWKLRLESIDAVSKIVEEAHKRIQPTGTVELF 897
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
LR RLYDSNKNLVMATL T+G +ASAMGPAVEKSSKG+L+D+LKCLGDNKKHMRECTL
Sbjct: 898 TALRARLYDSNKNLVMATLSTIGGLASAMGPAVEKSSKGILADVLKCLGDNKKHMRECTL 957
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T LD W+AA LDKMVPY+T L D K G+EGRKDLFDWLSK + +S +A LLKP+
Sbjct: 958 TALDLWVAAAQLDKMVPYITVTLGDQKTGSEGRKDLFDWLSKHASNMSDPSEALPLLKPS 1017
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ ++ DKSS+VRKAAE+ + EIL+ GQ+ + KNLKD+ P LA++ ER+KL+ +
Sbjct: 1018 ASSLMDKSSEVRKAAESFMNEILKICGQDVVAKNLKDLPSPTLAIVAERLKLSTVHEGFS 1077
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
SM SK+ SK K N + ++A+S R IP + + +++S QD ++Q
Sbjct: 1078 DSVKMVTTSMSLPSKAGSKNNKHGPNDRGSNVSKAVSQRGIPARSSV--TMISSQD-SIQ 1134
Query: 1128 SQALLNVKDSNKEDRERMV-VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKK 1186
SQAL N+KDSNKE+RER V VR+FKFE+PR EQI EL+ ++ ++FRED+ RL ++DFK+
Sbjct: 1135 SQALFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKR 1194
Query: 1187 QVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEG 1246
Q+DG+E+LQKALPS RK++IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D+
Sbjct: 1195 QIDGIELLQKALPSSRKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQS 1254
Query: 1247 YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNR 1306
Y LTE+EAA+FLPCL+EKSGHNIEKVREKM EL KQ+VN YS K LPYILEGLRSKNNR
Sbjct: 1255 YMLTEAEAAIFLPCLMEKSGHNIEKVREKMGELIKQMVNIYSLPKLLPYILEGLRSKNNR 1314
Query: 1307 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
TRIECVD++G+ +DHHG E+SG LK+L VA+LTAERDGEIRKAALNTLAT YK LG+D+
Sbjct: 1315 TRIECVDIIGYFMDHHGTEVSGLLKNLPSVAALTAERDGEIRKAALNTLATAYKNLGDDV 1374
Query: 1367 WRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD-V 1425
WRYVGKL+DAQ+SMLDDRFKWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+ V
Sbjct: 1375 WRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGEAV 1434
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVS-GPTDWNEALDIISFGSPEQSVEGMK 1484
S+S++G + R N+G+S+ H ++PR +A+ + GP DW EALDI++ G PEQSVEGMK
Sbjct: 1435 SRSMAGSMISRENFGYSDAH----MVPRQMATATPGPADWREALDIVALGLPEQSVEGMK 1490
Query: 1485 VVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLM 1544
V+CHEL QA DPE SV+D+L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTLM
Sbjct: 1491 VICHELTQAV-DPESSVLDDLIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTLM 1549
Query: 1545 QTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRT 1604
QTFQ KRLA+AV+E TLD+LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNA+RT
Sbjct: 1550 QTFQIKRLAHAVKEGTLDNLITELLLWLLDERVPLMDDGSQLLKALNVLMLKILDNAERT 1609
Query: 1605 SSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDR 1664
SSFVVLINLLRPLDPSRWPSP ES A +NQ+FSDLVVKCLIKLTKVLQSTIY+VDLDR
Sbjct: 1610 SSFVVLINLLRPLDPSRWPSPTPPESLAVKNQKFSDLVVKCLIKLTKVLQSTIYEVDLDR 1669
Query: 1665 ILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQ 1724
ILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPID +PQ
Sbjct: 1670 ILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDAEPQ 1729
Query: 1725 PIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKK 1784
PIILAYIDLNL+TLAAARMLT +G GQTHWGD+ +NNP +T+S DAQLKQELAA+FKK
Sbjct: 1730 PIILAYIDLNLQTLAAARMLTPSGTMGQTHWGDAGSNNPNPSTHSTDAQLKQELAAVFKK 1789
Query: 1785 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS 1844
IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS
Sbjct: 1790 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSS 1849
Query: 1845 VPMATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAI 1904
+P++T PP + SP+FAP SPVHT S+N+ N + T R G I
Sbjct: 1850 LPLST-PPPIAPIPSPKFAP-SPVHTKSINNKTDCNEDDAGGD-------THPFRGQGEI 1900
Query: 1905 ASKVLPPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGN-RPLINMND 1963
+++ ++ + +R+ +SGTLDA+RERMKS+Q AA N D RPL +MN
Sbjct: 1901 DNRL-----QTTNLQTDRYQ---SSGTLDALRERMKSIQAAAVGANFDGVQARPLPSMNG 1952
Query: 1964 NVNNGLSSQSRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2015
N +G R + Q + PMDE+ALSGLQARMERLKSG++EPL
Sbjct: 1953 NTLHG-------GTRLDADPQTQNIIPPMDERALSGLQARMERLKSGSMEPL 1997
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2015 | ||||||
| TAIR|locus:2058739 | 1978 | MOR1 "MICROTUBULE ORGANIZATION | 0.921 | 0.938 | 0.741 | 0.0 | |
| UNIPROTKB|E1B7K5 | 2032 | CKAP5 "Uncharacterized protein | 0.516 | 0.511 | 0.294 | 2.3e-173 | |
| UNIPROTKB|E2RSW0 | 2033 | CKAP5 "Uncharacterized protein | 0.553 | 0.548 | 0.285 | 1.4e-172 | |
| UNIPROTKB|Q14008 | 2032 | CKAP5 "Cytoskeleton-associated | 0.553 | 0.548 | 0.285 | 8.8e-171 | |
| UNIPROTKB|F1P0Y0 | 2036 | CKAP5 "Uncharacterized protein | 0.516 | 0.510 | 0.294 | 5.8e-169 | |
| MGI|MGI:1923036 | 2032 | Ckap5 "cytoskeleton associated | 0.518 | 0.513 | 0.288 | 8.3e-169 | |
| ZFIN|ZDB-GENE-051120-174 | 2033 | ckap5 "cytoskeleton associated | 0.497 | 0.492 | 0.295 | 3e-160 | |
| UNIPROTKB|F1M949 | 1778 | Ckap5 "Protein Ckap5" [Rattus | 0.397 | 0.449 | 0.292 | 4.2e-143 | |
| DICTYBASE|DDB_G0268616 | 2013 | cepJ "centrosomal protein 224 | 0.267 | 0.267 | 0.271 | 3.7e-123 | |
| UNIPROTKB|F1SIB5 | 1517 | F1SIB5 "Uncharacterized protei | 0.252 | 0.335 | 0.313 | 2.3e-113 |
| TAIR|locus:2058739 MOR1 "MICROTUBULE ORGANIZATION 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 7057 (2489.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 1388/1871 (74%), Positives = 1555/1871 (83%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
PWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTVADSNAPVQ+KALD
Sbjct: 16 PWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTVADSNAPVQEKALD 75
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVME 134
ALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWVELEAVDVFLD ME
Sbjct: 76 ALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWVELEAVDVFLDTME 135
Query: 135 XXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
+DVMFQALSEFG+K+IPPKRILKMLPELFDHQDQNVRAS+KG+TLE
Sbjct: 136 KAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQDQNVRASAKGVTLE 195
Query: 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDV 254
LCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQDKE E S+ V
Sbjct: 196 LCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQDKEPEAEASSDVV 255
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS 314
G GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSERK+AVAELTKLAS
Sbjct: 256 GDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLAS 315
Query: 315 TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXX 374
TK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS SSRF
Sbjct: 316 TKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFSASSRFMLPVLLEK 375
Query: 375 XXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434
+V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS TL W+TFC+ETS
Sbjct: 376 LKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRSSTLTWLTFCLETS 435
Query: 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 494
+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPLERS+EKLDDVR+
Sbjct: 436 NKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPLERSLEKLDDVRKK 495
Query: 495 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554
KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASMLSGKRP +A AS
Sbjct: 496 KLSEMIAGSGGGDQAGTSSVTVQSSVGSTATGN-SDASFVRKSAASMLSGKRPAPSAQAS 554
Query: 555 KKGGPVKPSA-KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSA 613
KK G KP KKDGS + E SK E PEDVEP+EM LEEIE+RLGSL+ +TV QLKS+
Sbjct: 555 KKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGSLVKPETVSQLKSS 614
Query: 614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAAT 673
VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKN Y+++T
Sbjct: 615 VWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQQQVIEIITYISST 674
Query: 674 ATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPK 733
A KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FERL+KIMK+HKNPK
Sbjct: 675 AAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFERLFKIMKEHKNPK 734
Query: 734 VLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793
VLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATIKLLGALHKFVGPD
Sbjct: 735 VLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATIKLLGALHKFVGPD 794
Query: 794 IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGK 853
IKGFL DVKPALLSALD EYEKNPFEGT PK+ V+ LPREDIS K
Sbjct: 795 IKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVVKTSVSTSTSSGGLDS-LPREDISTK 853
Query: 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913
TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGLRGRL DSNKNLVM
Sbjct: 854 ITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGLRGRLLDSNKNLVM 913
Query: 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 973
TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL LD WL AVHLDKM+
Sbjct: 914 QTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAALDLWLGAVHLDKMI 973
Query: 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAE 1033
PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS AMTDKS+DVRKAAE
Sbjct: 974 PYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTAMTDKSADVRKAAE 1033
Query: 1034 ACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQVSMGPTXXXXXXX 1087
CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+ GP
Sbjct: 1034 GCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSKAMAGPVSKGVTKI 1093
Query: 1088 XXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVV 1147
NG K GNR SR +PTKG+ I SV D A+QSQALLN KDSNKEDRER+VV
Sbjct: 1094 SKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNTKDSNKEDRERVVV 1148
Query: 1148 RRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1207
RR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+LQKALPS+ K+IIE
Sbjct: 1149 RRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIE 1208
Query: 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267
VLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EAA+FLPCL EK GH
Sbjct: 1209 VLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEAAIFLPCLAEKLGH 1268
Query: 1268 NIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS 1327
NIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL+G+L++ G EI
Sbjct: 1269 NIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDLIGYLLETCGTEIG 1328
Query: 1328 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKW 1387
G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLTDAQKSM+DDRFKW
Sbjct: 1329 GLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLTDAQKSMIDDRFKW 1388
Query: 1388 KVRXXXXXXXXXXXXARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVE 1447
K + ARAALRRSVR++G ++AEQSGD+SQ+V GP R++YG SE +E
Sbjct: 1389 KAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLFPRQSYGISEQMLE 1448
Query: 1448 RSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVK 1507
R+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+NDPE S +DELVK
Sbjct: 1449 RTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQASNDPEESAIDELVK 1508
Query: 1508 DADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQXXXXXXXXXX 1567
DAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+AV+
Sbjct: 1509 DADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAHAVKEGTLESLITE 1568
Query: 1568 XXXXXXXERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPAS 1627
ERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LLRPLDPSRWPSPA+
Sbjct: 1569 LLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLLRPLDPSRWPSPAT 1628
Query: 1628 NESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGA 1687
E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ+LGMEEIRRRAGA
Sbjct: 1629 AEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQDLGMEEIRRRAGA 1688
Query: 1688 DDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTST 1747
DDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLNLETLAAARMLT+T
Sbjct: 1689 DDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLNLETLAAARMLTAT 1748
Query: 1748 GPGGQTHWGXXXXXXXXXXXXXXXXQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPK 1807
GP GQTHW QLKQEL AIFKKIGDKQT TIGLY+LY IT+ YPK
Sbjct: 1749 GPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIGLYDLYHITKSYPK 1808
Query: 1808 VDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSPEFAPLSP 1867
VDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++L + SP+ LS
Sbjct: 1809 VDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSSLALPSPDIPSLSS 1868
Query: 1868 VHTNSMNDAKS 1878
+ + + +S
Sbjct: 1869 LDVKPLMNPRS 1879
|
|
| UNIPROTKB|E1B7K5 CKAP5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 2.3e-173, Sum P(3) = 2.3e-173
Identities = 319/1085 (29%), Positives = 522/1085 (48%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGMEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +G RP R +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINPVQLKELEEEWVKLPTGAPRPARFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEK 487
+ + + K + K + ++ +ND PEVRDAAF L K VG + P ++K
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 488 L--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544
L D ++ ++ E++ G +A + G + S A + K A++ G
Sbjct: 485 LKLDKIKECSEKVELVHGKKAGLAADKKDFK-PVPGRAAASGAAGDKD--TKDASAPKPG 541
Query: 545 KRPVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGS 600
P+ APA+K GGP K A + G+G T K E E VEP E+S+E E + +
Sbjct: 542 --PLKKAPAAKPGGPPKKGKPAAQGGTGGTGTKSKKAVETKEMVEP-ELSIEVCEEKASA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++PA + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 599 VLPATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ +++ D+K +A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACVLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXX-- 838
LLG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 777 TLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGE 836
Query: 839 ---------XXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ 889
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQ
Sbjct: 837 DGDEPDDGGSDAVDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAAIINEA-KFIQ 895
Query: 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949
P GEL L+GRL DSNK LV TL L +A AMGP +++ K + ++ LGD+K
Sbjct: 896 P-NIGELPTALKGRLNDSNKILVQQTLTILQQLAVAMGPNIKQHVKNLGIPVITVLGDSK 954
Query: 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 1009
++R L ++AW + + + + K R++L WL+++L L P
Sbjct: 955 NNVRSAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPT 1014
Query: 1010 AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILE 1065
L P + + D++ DVRK A+ + + G E + K LK + +LE
Sbjct: 1015 DLILCVPQLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLE 1074
Query: 1066 RIKLN 1070
+ K N
Sbjct: 1075 KAKAN 1079
|
|
| UNIPROTKB|E2RSW0 CKAP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.4e-172, Sum P(3) = 1.4e-172
Identities = 331/1160 (28%), Positives = 549/1160 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKLVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ + + K + K + ++ +ND PEVRDAAF L K VG + + + +D
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 491 VRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR- 546
++ +K+ SE + G A G ++ + ++ VP A+ + K + + K
Sbjct: 485 LKLDKIKECSEKVELVHGKKA-GLAADKKESK--PVPGRTATSGAAGDKDTKDISAPKPG 541
Query: 547 PVSAAPASKKGGPVK---PSAK-KDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602
P+ AP +K GGP K P+A GS + K E E VEP E+S+E E + +++
Sbjct: 542 PLKKAPTTKAGGPPKKGKPAAPGSTGSAGTKNKKGPETKEIVEP-ELSIEVCEEKASAVL 600
Query: 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXX 662
PA + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 601 PATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQM 660
Query: 663 XXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERL 722
+A F K + L G+ +++ D+K +A + +T +EA + E++
Sbjct: 661 KLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQV 719
Query: 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782
+ KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I L
Sbjct: 720 MSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITL 778
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXX---- 838
LG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 779 LGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGISKHSISGTDEGEDG 838
Query: 839 -------XXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP
Sbjct: 839 DEPDEVGTDVVDLLPRTEISDKITSELVSKISDKNWKIRKEGLDEVAGIINEA-KFIQP- 896
Query: 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951
GEL L+GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K +
Sbjct: 897 NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNN 956
Query: 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011
+R L ++AW + + + + K R++L WL+++L L P
Sbjct: 957 VRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDL 1016
Query: 1012 HLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERI 1067
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1017 ILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKA 1076
Query: 1068 KLNGASQ--VSMGPTXXXXXXXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
K N ++ S + S ++SS V P + + V A
Sbjct: 1077 KANMPAKPAASAKASSKPMGGSAPAKFQPSSAPVEDSVSSTVEPKPDPKKAKALGVSSKA 1136
Query: 1126 VQSQAL-LNVKDSNKEDRER 1144
+Q + K S KED ++
Sbjct: 1137 KSAQGKKVPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|Q14008 CKAP5 "Cytoskeleton-associated protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 8.8e-171, Sum P(3) = 8.8e-171
Identities = 332/1161 (28%), Positives = 546/1161 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +A RPTR +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALESVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 IKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ + + K + K + ++ +ND PEVRDAAF L K VG + + + +D
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 491 VRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR- 546
++ +K+ SE + G A G ++ + + +P A+ + K + + K
Sbjct: 485 LKLDKIKECSEKVELIHGKKA-GLAADKKEFK--PLPGRTAASGAAGDKDTKDISAPKPG 541
Query: 547 PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLI 602
P+ APA+K GGP K A G+G T K E E VEP E+S+E E + +++
Sbjct: 542 PLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVL 600
Query: 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXX 662
P + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 601 PPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQM 660
Query: 663 XXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERL 722
+A F K + L G+ +++ D+K +A + +T +EA + E++
Sbjct: 661 KLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQV 719
Query: 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782
+ KNPK SE + W+ +A+++FG S L +K I K T L ++ A R A I L
Sbjct: 720 VSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTAAITL 778
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX----- 837
LG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 779 LGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGISKHSTSGTDEGEDG 838
Query: 838 ------XXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891
LPR +IS K T LV + +WK+R E ++ V I+ +A K IQP
Sbjct: 839 DEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINDA-KFIQP- 896
Query: 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951
GEL L+GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K +
Sbjct: 897 NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNN 956
Query: 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011
+R L ++AW + + + + K R++L WL+++L L P
Sbjct: 957 VRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDL 1016
Query: 1012 HLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERI 1067
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1017 ILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKA 1076
Query: 1068 KLNGASQVSMGPTXXXXX---XXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDF 1124
K+N ++ + PT S ISS P + +
Sbjct: 1077 KVNMPAKPAP-PTKATSKPMGGSAPAKFQPASAPAEDCISSSTEPKPDPKKAKAPGLSSK 1135
Query: 1125 AVQSQAL-LNVKDSNKEDRER 1144
A +Q + K S KED ++
Sbjct: 1136 AKSAQGKKMPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|F1P0Y0 CKAP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 5.8e-169, Sum P(3) = 5.8e-169
Identities = 319/1084 (29%), Positives = 514/1084 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + L I D K + L KK V DSNA Q K L+
Sbjct: 11 PIDQKCEHKLWKARLNGYEEALKLFQKIDDEKSPEWSKYLGLIKKFVTDSNAVAQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAV--FMLWVELEAVDVFLDV 132
A +AY++ A AG+ EV + K +PK K V ++++E+E + +
Sbjct: 71 AALAYVENAHV-AGKTTGEVASGVVNKVFN-QPKARAKELGVDICLMYIEIEKGEAVQEE 128
Query: 133 MEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K L
Sbjct: 129 LLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESREKAVRDEAKLLA 188
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELIS 251
+E+ RWI +D ++ L + + KELE E V VS A + TR +R++Q EL +
Sbjct: 189 VEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKVSSAAPKQTRFLRSQQ--ELKAKFEQ 244
Query: 252 EDVGPGPSEESTAD---VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
+ G +E D P++D YEL++ V+IL+ L K F+E ++A KW ERK+A+
Sbjct: 245 QQAAGGDGDEGDDDEEEAVPQVDAYELLEAVEILSKLPKD-FYEKIEAKKWQERKEALEA 303
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFX 367
+ L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 304 VEVLVKNPKLESGDYADLVKVLKKVVGKDTNVMLVALAAKCLAGLASGLRKKFGQYAGHV 363
Query: 368 XXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 364 VPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFI 421
Query: 428 TFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLER 483
+ + + K + K + ++ +ND PEVRDA F L K G + P
Sbjct: 422 ARSFRHCTPSTLPKSLLKPFCAALLKHINDSAPEVRDAGFEALGTALKVAGEKAVNPFLA 481
Query: 484 SIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLS 543
++KL R + +E + G + G P++ S K AA+
Sbjct: 482 DVDKLKLDRIKECAEKVELVYGKKTGAAEKKEGKPVAGKAPALSGSAGDKEIKDAAAK-P 540
Query: 544 GKRPVSAAPASKKGGPVKPSAKKDGSGKQET-SKLTEAPEDVE--PSEMSLEEIESRLGS 600
G P AP K GGP K S +G +K + PE E SE+S+E E + +
Sbjct: 541 G--PQKKAPVVKPGGPPKKSKPAAAAGTGGAGAKGKKGPETKEIFESELSIEVCEEKAAA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++PA + QL S WKERL ++ ++ VE ++ + + LVR++ PGW E N
Sbjct: 599 VLPASCIQQLDSGNWKERLASMEEFQKAVELMERSEMPCQALVRMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ ++V D+K ++A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKVGDVKCGSNAKEAMTAIAEACQLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVVAMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXX 840
LLG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 777 TLLGVMYLYVGPPLRMFFEDEKPALLSQIDAEFEKMQGQTAPAPTRGISRHSGGSGDDGE 836
Query: 841 XXXX----------LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP 890
LPR DI K T LV + +WK+R E ++ V I+ +A K IQP
Sbjct: 837 EEEQEDVGNDVVDLLPRTDIGDKITAELVAKIGDKNWKIRKEGLDEVTSIINDA-KFIQP 895
Query: 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950
GEL L+ RL DSNK LV TL L +A+AMGP +++ K + ++ LGD+K
Sbjct: 896 -NIGELPAALKSRLNDSNKILVQQTLSILQQLATAMGPNIKQHVKNLGIPVITVLGDSKN 954
Query: 951 HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
++R L ++AW + + + + K R++L WL+ +L L P
Sbjct: 955 NVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLADKLPTLRSVPSD 1014
Query: 1011 AHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILER 1066
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1015 LLLCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGFEKMAKATGKLKPTSKDQVLAMLEK 1074
Query: 1067 IKLN 1070
K N
Sbjct: 1075 AKAN 1078
|
|
| MGI|MGI:1923036 Ckap5 "cytoskeleton associated protein 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1095 (390.5 bits), Expect = 8.3e-169, Sum P(3) = 8.3e-169
Identities = 314/1089 (28%), Positives = 516/1089 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + +++VE+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +D+ VR +K +
Sbjct: 130 LKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLFAI 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RW +D VK L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 190 EIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P++D YEL+D V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEK 487
+ + + K + K + ++ +ND PEVRDAAF L K VG + P ++K
Sbjct: 425 RHCTSSTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKSVNPFLADVDK 484
Query: 488 L--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544
L D ++ ++ E++ G +AT ++ G + S A + K + G
Sbjct: 485 LKLDRIKECSEKVELVHGKKSGLATEKKESK-PLPGRAAASGAAGDKD--TKDVSGPKPG 541
Query: 545 KRPVSAAPASKKGGPVKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGS 600
P+ P +K GGP K + GS T K E E VEP E+S+E E + +
Sbjct: 542 --PLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGLETKEIVEP-ELSIEVCEEKASA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++P + L S+ WKERL + ++ VE ++ + + LV+++ PGW E N
Sbjct: 599 VLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMPCQALVKMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ +++ D+K +A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXX 840
LLG ++ +VGP ++ D KPALLS +DAE++K + P + +
Sbjct: 777 TLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGIAKHSTSATDEGE 836
Query: 841 XXXX-----------LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ 889
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQ
Sbjct: 837 DGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQ 895
Query: 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949
P GEL L+GRL DSNK LV TL L +A AMG + + K + ++ LGD+K
Sbjct: 896 P-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGANIRQHVKNLGIPVITVLGDSK 954
Query: 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 1009
++R L ++AW + + + + K R++L WL+++L L P
Sbjct: 955 NNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPT 1014
Query: 1010 AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILE 1065
L P + + D++ DVRK A+ + + G E + K LK + +LE
Sbjct: 1015 DLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLE 1074
Query: 1066 RIKLNGASQ 1074
+ K N S+
Sbjct: 1075 KAKANMPSK 1083
|
|
| ZFIN|ZDB-GENE-051120-174 ckap5 "cytoskeleton associated protein 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 3.0e-160, Sum P(3) = 3.0e-160
Identities = 314/1064 (29%), Positives = 515/1064 (48%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + L + + + LG L KK V +SNA Q K L+
Sbjct: 11 PIDQKCEHKVWKARLSGYEEALKLFQKLDEKSPEWSKYLG-LIKKFVTESNAVAQLKGLE 69
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEK--AQAVFMLWVELEAVDVFLDV 132
A +A+++ A AG+ EV + K +PK K + ++++E+E +V D
Sbjct: 70 AALAFIENAHV-AGKTVGEVVSGVVNKVFN-QPKARAKELGTEICLMYIEIEKAEVVQDE 127
Query: 133 MEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ I+ + +AL EFG+KII K ++K+LP+LF+ +++ VR +K L
Sbjct: 128 LIKGLDNKNPKIVVACIEALRKALCEFGSKIITLKPVVKVLPKLFESREKAVRDEAKLLA 187
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQD---KELGQE 248
+E+ RWI +D ++ L + + KELE E V V TA + R +R++QD K Q+
Sbjct: 188 VEIYRWI-RDALRAPL-QNINSVQLKELEEEWVKVPATAPKQIRFLRSQQDLKAKFEQQQ 245
Query: 249 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
D G EE V ++D YEL++ V+IL+ L K F+E ++A KW ERK+A+
Sbjct: 246 AAGGDEADGDDEEVAEAV--QVDAYELLEAVEILSKLPKD-FYEKIEAKKWQERKEALEA 302
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFX 367
+ L ++ GD+ ++ R LKK+I D N+ + A + + LA GLR F +
Sbjct: 303 VEALTKNPKLESGDYGDLVRALKKVIGKDANVMLVSMAAKCLAGLATGLRKKFGTYAGLV 362
Query: 368 XXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
V ++L + + A+ L ++ EDV + NK P ++ ++
Sbjct: 363 VPTILEKFKEKKPQVVQALQEAIDAVFLTTTLQ--NISEDVLAVMDNKNPSIKQQASLFL 420
Query: 428 TFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486
+ + + K V K + ++ +ND PEVRDAAF L K +G + + +
Sbjct: 421 ARSFRHCTPSTLPKSVLKPFCAAFLKQVNDSAPEVRDAAFEALGTAMKVIGEKAVNPFLT 480
Query: 487 KLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTSGGSVPSVEA-SESSFVRKSAA 539
+D ++ +K+ E +I GG G + + + + P VEA +++S K +A
Sbjct: 481 DVDKLKLDKIKECADKVELIGKKGG----GGGEKKERPAAKASPPVEAPAKTSGPPKKSA 536
Query: 540 SMLSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
P AA KKG P PSAK + K E E +E +E+S E E +
Sbjct: 537 -------PAKAAGPPKKGKPAAAPSAK--------SKKAPETKEIIE-TELSPEVCEEKA 580
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXX 658
+++PA + L SA WKERL ++ ++ VE + + + LV+++ PGW E N
Sbjct: 581 AAVLPASCMQLLDSANWKERLASMEEFQKAVEQMDKSEMPCQALVKMLAKKPGWKETNFQ 640
Query: 659 XXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
L A +F K ++ L G+ +++ D+K +A + LT EA +
Sbjct: 641 VMQMKLSIVG-LVAQKGQFSKTSALVVLDGLVDKIGDVKCGGNAKEALTAIGEACSLPWT 699
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
E++ I KNPK +E + W+ +A+++FG + + +K I+ K T L ++ A R +
Sbjct: 700 AEQVVSIAFAQKNPKNQAETLNWLANAMKEFGFAGINVKGFINNVK-TALGATNPAVRTS 758
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP----KKT------- 827
I LLG ++ ++G ++ F D KPALLS +DAE+ K + P KK
Sbjct: 759 AIALLGVMYLYMGAPLRMFFEDEKPALLSQIDAEFVKMQGQSPPAPTRGAKKAGAEEDGD 818
Query: 828 VRAXXXXXXXXXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V LPR DIS K T +V + +WK+R E ++ V ++ EA K
Sbjct: 819 VADEDEADGGAGDIMDMLPRTDISDKITSEMVSKISDKNWKIRKEGLDEVAAVISEA-KF 877
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
IQ A GEL L+GRL DSNK LV TL L +A AMGP++++ K + ++ LGD
Sbjct: 878 IQ-ANIGELPMALKGRLNDSNKLLVQQTLNILQQIAIAMGPSLKQHVKNLGIPVVTVLGD 936
Query: 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007
+K ++R + L+AW+ + + + + K R++L WLS++L L
Sbjct: 937 SKPNVRATAMATLNAWVEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLSEKLPTLRTV 996
Query: 1008 PDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
P L P + D+S DVRK A+ + + G + + K
Sbjct: 997 PADLMLCVPHLYTCLEDRSGDVRKKAQDALPTFMMHLGFDKMTK 1040
|
|
| UNIPROTKB|F1M949 Ckap5 "Protein Ckap5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 4.2e-143, Sum P(3) = 4.2e-143
Identities = 244/834 (29%), Positives = 395/834 (47%)
Query: 265 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT 324
D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L + R+ GD+
Sbjct: 6 DEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEGLVRSPRLEAGDYA 64
Query: 325 EVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVA 383
E+ + LKK++ D N+ + A + + LA GLR F + V
Sbjct: 65 ELVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVV 124
Query: 384 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-V 442
++L + + A+ L ++ EDV + NK P ++ T ++ + + + K +
Sbjct: 125 QALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSFRHCTSSTLPKSL 182
Query: 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502
K + ++ +ND PEVRDAAF L K VG + + + +D ++ +K+ E
Sbjct: 183 LKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKTVNPFLADVDKLKLDKIKE--CS 240
Query: 503 SGGDVATGTSSARVQTSGGSVPSV-EASESSFVRKSAASMLSGKRP--VSAAPASKKGGP 559
++ G S S P A+ S +SG +P + APA+K GGP
Sbjct: 241 EKVELVHGKKSGLAAEKKESKPLPGRAAASGAAGDKDTKDVSGPKPGPLKKAPATKAGGP 300
Query: 560 VKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW 615
K + GS T K E E EP E+S+E E + +++P + L S+ W
Sbjct: 301 PKKGKTTAPGGSASSGTKNKKGLETKEIAEP-ELSIEVCEEKASAVLPPTCIQLLDSSNW 359
Query: 616 KERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATAT 675
KERL + ++ VE ++ + + LV+++ PGW E N +A
Sbjct: 360 KERLACMEEFQKAVELMERSEMPCQALVKMLAKKPGWKETNFQVMQMKLHIVALIAQKGN 419
Query: 676 KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
F K + L G+ +++ D+K +A + LT +EA + E++ + KNPK
Sbjct: 420 -FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNPKNQ 478
Query: 736 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795
SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP ++
Sbjct: 479 SETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGPSLR 537
Query: 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX-----------XXXXXXX 844
D KPALLS +DAE++K + P + +
Sbjct: 538 MIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGISKHSTSGTDEGDDGDEPGDGSNDVVDL 597
Query: 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+GRL
Sbjct: 598 LPRVEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALKGRL 655
Query: 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964
DSNK LV TL L +A AMGP V++ K + IL LGD+K ++R L ++AW
Sbjct: 656 NDSNKILVQQTLNILQQLAVAMGPNVKQHVKNLGIPILTVLGDSKNNVRAAALATVNAWA 715
Query: 965 AAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTD 1023
+ + + + K R++L WL+++L L P L P + + D
Sbjct: 716 EQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPMLRSTPTDLILCVPHLYSCLED 775
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLNGASQ 1074
++ DVRK A+ + + G E + K LK + +LE+ K N S+
Sbjct: 776 RNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKANMPSK 829
|
|
| DICTYBASE|DDB_G0268616 cepJ "centrosomal protein 224 kDa" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 3.7e-123, Sum P(5) = 3.7e-123
Identities = 153/563 (27%), Positives = 266/563 (47%)
Query: 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
EDR+ HKNWK R +L + + E GP FKK +AD N Q++AL+ L
Sbjct: 12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPL 71
Query: 77 IAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEX 135
A++ D ++A + K RP+ EK +L +E ++ + ++ +
Sbjct: 72 SAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLK 130
Query: 136 XXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195
+ + QAL FG K IP K ILK F+++D+ +R + L +E+
Sbjct: 131 GTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEI 190
Query: 196 CRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISEDV 254
RWIGK + ++ E + K L+ + + + A P + R+E K L S+ +
Sbjct: 191 YRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPAVPLKYTRSEAAKALANA--SKGI 247
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-TKLA 313
P +V EID Y L+ V+IL L S F+EG++A KW ER + + +L T L
Sbjct: 248 QAKP------EVVEEIDPYSLMTAVNILPKLT-SEFYEGLQAKKWQERSEQMDKLVTILT 300
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXX 373
+T +I DF+E+C+ LKK++ DVN+ + +A+ +IG LA LR F+ +
Sbjct: 301 NTPKIETADFSELCKALKKILADVNVMIVQKAVVSIGLLADSLRGGFTSYVKPFITPILE 360
Query: 374 XXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433
+V +S+ T+ ++ ++L D+++++ ++++KVP ++ L ++ I
Sbjct: 361 KFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTATMQSKVPQIKQEVLVFICNSITN 419
Query: 434 SSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492
+ K A + KV K I ME LND +RD A AA+ +G R + + ++D ++
Sbjct: 420 TKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAFAALGGIIGERAMTPYLNQIDPIK 479
Query: 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552
K+ + + VAT + + + ++ SS +K AA+ + K + P
Sbjct: 480 AKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLPVSSSNKKPAAATGNSKSSSTTTP 535
Query: 553 ASKKGG----PVKPSAKKDGSGK 571
+ P PS+ D K
Sbjct: 536 TGRSSNSSPLPPPPSSSDDIKNK 558
|
|
| UNIPROTKB|F1SIB5 F1SIB5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 2.3e-113, Sum P(3) = 2.3e-113
Identities = 167/533 (31%), Positives = 258/533 (48%)
Query: 557 GGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 612
GGP K A + G+G T K E E VEP E+S+E E + +++PA + L S
Sbjct: 2 GGPPKKGKPAAQGGTGSTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVLPAPCIQLLDS 60
Query: 613 AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAA 672
+ WKERL + ++ VE + + + LVR++ PGW E N +A
Sbjct: 61 SNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQMKLHIVALIAQ 120
Query: 673 TATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP 732
F K + L G+ +++ D+K +A + LT +EA + E++ + KNP
Sbjct: 121 KGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNP 179
Query: 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792
K SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP
Sbjct: 180 KNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGP 238
Query: 793 DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXX-------- 844
++ F D KPALLS +DAE+EK + P + +
Sbjct: 239 SLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGEDGDEPDDGGNDV 298
Query: 845 ---LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+
Sbjct: 299 VDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALK 356
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K ++R L ++
Sbjct: 357 GRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNNVRAAALATVN 416
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA- 1020
AW + + + + K R++L WL+++L L P L P +
Sbjct: 417 AWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDLILCVPHLYSC 476
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLN 1070
+ D++ DVRK A+ + + G E + K LK + +LE+ K N
Sbjct: 477 LEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKAN 529
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94FN2 | MOR1_ARATH | No assigned EC number | 0.7594 | 0.9756 | 0.9939 | yes | no |
| Q5N749 | MOR1_ORYSJ | No assigned EC number | 0.7224 | 0.9811 | 0.9899 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2015 | |||
| pfam12348 | 228 | pfam12348, CLASP_N, CLASP N terminal | 0.001 | |
| pfam02985 | 31 | pfam02985, HEAT, HEAT repeat | 0.003 |
| >gnl|CDD|221541 pfam12348, CLASP_N, CLASP N terminal | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 30/187 (16%)
Query: 299 WSERKDAVAELTKL----ASTKRIAPGDFTEVCRTLK----KLITDVNIAVAVEAIQAIG 350
W R+ A+ +L + A P +F + L K ++ + ++ +
Sbjct: 21 WDAREKAIIKLRSIIKGNAPED--YPSEFLAGLKQLLEGILKALSSLRTTLSSTGCHLLK 78
Query: 351 NLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 410
LA L H + LLP LL+ + K ++++ Q + + V ++
Sbjct: 79 ELAIQLGHHLDPFAEILLPTLLKLCGDTKKIISQNANQAVADILSN-----VSYTPRLEL 133
Query: 411 SV-------KNKVPLVRSLTLNW-----VTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458
KN P R + W + S + Y + L D
Sbjct: 134 QHISAALQDKNVQP--REYSAIWLKILLIRHGHHKSHIEHHGGL-DLYEKSLKKGLEDAN 190
Query: 459 PEVRDAA 465
P VR+ A
Sbjct: 191 PGVRETA 197
|
This region is found at the N terminal of CLIP-associated proteins (CLASPs). CLASPs are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules. In yeast, Drosophila, and Xenopus, a single CLASP orthologue is present. In mammals, a second paralogue (CLASP2) exists which has some functional overlap with CLASP1. Length = 228 |
| >gnl|CDD|202500 pfam02985, HEAT, HEAT repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.003
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSV 476
+P+ +E LND PEVR+AA L A+A+ +
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALAEVL 31
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2015 | |||
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.96 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.9 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.87 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.85 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.73 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.73 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.66 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.63 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.62 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 99.56 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.51 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.48 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.47 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.42 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.37 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.24 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.24 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 99.23 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.22 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.14 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.03 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 98.98 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.73 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.71 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.7 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.65 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.64 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.63 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.63 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.6 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.36 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.33 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.81 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.61 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.56 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.56 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.52 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.41 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.36 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.28 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 97.26 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.25 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.22 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.1 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.08 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.93 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.88 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 96.85 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 96.83 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.82 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.81 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 96.78 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.76 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.75 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.58 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.51 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.41 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.4 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.39 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.33 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.33 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 96.26 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.24 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.19 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 96.06 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.02 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.02 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.02 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 96.01 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.01 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.0 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 95.98 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 95.94 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 95.92 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 95.7 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 95.48 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.36 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 95.34 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 95.13 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 94.97 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.97 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.94 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 94.87 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 94.86 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 94.79 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 94.57 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 94.41 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 94.35 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 94.35 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.32 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 94.31 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 94.23 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 94.19 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 94.18 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.15 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 94.14 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 93.83 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 93.44 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 93.38 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 93.3 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.27 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 93.17 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 93.06 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 93.05 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 92.47 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 92.19 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 91.89 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 91.86 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 91.65 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 91.04 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 90.94 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 90.91 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 90.74 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 90.68 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 90.59 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 90.34 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 90.26 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 90.16 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 89.91 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 89.78 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 89.67 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 89.62 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 89.56 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 89.51 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 89.35 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 89.08 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 88.9 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 88.56 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 87.93 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 87.85 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 87.31 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 87.29 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 87.21 | |
| KOG1087 | 470 | consensus Cytosolic sorting protein GGA2/TOM1 [Int | 86.98 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 86.87 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 86.72 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 86.09 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 85.51 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 85.3 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 85.2 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 84.81 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 84.34 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 83.91 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 83.66 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 83.43 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 83.42 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 83.42 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 83.39 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 83.09 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 83.05 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 82.93 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 82.81 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 82.14 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 81.96 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 81.86 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 81.73 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 81.51 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 81.27 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 81.23 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 81.03 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 81.02 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 80.97 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 80.87 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 80.83 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 80.83 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 80.72 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 80.49 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 80.38 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 80.32 |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=528.45 Aligned_cols=742 Identities=26% Similarity=0.304 Sum_probs=569.5
Q ss_pred hhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHH-hcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 000156 609 QLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLL 687 (2015)
Q Consensus 609 ~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L-~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~ 687 (2015)
.+.+..|+.|.++...+...+......+.....+++.. ...++|+..|++|..-.+.++..-..
T Consensus 13 ~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~--------------- 77 (815)
T KOG1820|consen 13 ELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRV--------------- 77 (815)
T ss_pred hhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhcccccc---------------
Confidence 37888999999999999988877554443334444433 33356788888777655555432211
Q ss_pred HHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcC
Q 000156 688 GISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTG 767 (2015)
Q Consensus 688 ~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~g 767 (2015)
.+.| ...+++..+....+...+++.++.. ..-|.||..+.++..+..++.+||...+.++.+++.+..+
T Consensus 78 ----~~~~-----~~~~~~~~i~~~~~~~~~~e~~~~~-~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l- 146 (815)
T KOG1820|consen 78 ----NIRD-----TKTQSLLRIGKLEDIKEVVEAAKAL-LSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSL- 146 (815)
T ss_pred ----cccC-----cchhHHHHHHHhhhhHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccc-
Confidence 1112 2222333333333344455555554 3679999999999999999999999888888888776654
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhChhHHhhhh-hccHHHHHHHHHHHhcCCCC----CCCC-------------------
Q 000156 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLA-DVKPALLSALDAEYEKNPFE----GTVV------------------- 823 (2015)
Q Consensus 768 L~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~-~lkp~ll~~Le~ef~k~~~~----~~p~------------------- 823 (2015)
. +.+||.++.++++.||++.|..+..++. .-.+.++..+...+.+.... ..+.
T Consensus 147 ~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~ 223 (815)
T KOG1820|consen 147 A---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEK 223 (815)
T ss_pred c---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccc
Confidence 3 8899999999999999999999887663 33344555555444333210 0000
Q ss_pred CcccccCccccCCCC-CCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000156 824 PKKTVRASESTSSVS-SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2015)
Q Consensus 824 p~R~~r~~~~~~s~~-~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~ 902 (2015)
+.+.++...+. .++ .+..|.+||+||++++++.|...+.|++||.|+||++.+..++.+....+....++.+...++.
T Consensus 224 ~~~~~~~~~~~-~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki 302 (815)
T KOG1820|consen 224 PERGLQRSKSG-FTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKI 302 (815)
T ss_pred cccccccccCC-CCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHH
Confidence 00000000000 011 2346889999999999999999999999999999999999999975434555666788888899
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhc
Q 000156 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD 982 (2015)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~ 982 (2015)
++.|+|.+|+..|+.+|+.||.+||..|.+|...++|.|+.+++|++..+|+++..|+++|+..+++..+.+.|..++++
T Consensus 303 ~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~ 382 (815)
T KOG1820|consen 303 RLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKG 382 (815)
T ss_pred hccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHhccCCCC----CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000156 983 AKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (2015)
Q Consensus 983 ~k~~p~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~ 1058 (2015)
+ ||+.|.+++.|+.+.+...+.. ..+..+++.++...+|++.+||++|..++.++|+++|++.+.+++..+++.
T Consensus 383 k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 383 K--NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ 460 (815)
T ss_pred C--ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 7 6999999999999999988732 345666777999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCccCCCCCCCCCCCCccccchhhhhhhhhcc
Q 000156 1059 ALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVS-----KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLN 1133 (2015)
Q Consensus 1059 ~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (2015)
.+..+.+-+.+.-.....+.+++++..+.....+..+. ......+++...|.+.+...+ ++..+. ....+.+
T Consensus 461 ~~~~~~E~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~-~~~~~~-~~~~~~~- 537 (815)
T KOG1820|consen 461 DIKPKEEKLKPLLHFLAAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANS-SRKIPE-AAEAPKL- 537 (815)
T ss_pred hhhhhhhhccccccccccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCccccccc-ccCCcc-hhhcccc-
Confidence 44444444433211111222222221110000000000 000000111111111111100 001111 1111211
Q ss_pred cCCCChHHHh----hhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCcChhhHHHHH
Q 000156 1134 VKDSNKEDRE----RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVL 1209 (2015)
Q Consensus 1134 ~~~~~k~~R~----~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~i~~l 1209 (2015)
.+..+++|. +..+.+|++..+..+..+. |...+.......||+.||+.|.++++.++.....+..++.++.
T Consensus 538 -~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~ 612 (815)
T KOG1820|consen 538 -QLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEP----SKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQ 612 (815)
T ss_pred -ccccccchhhhhhhhccCccccccchhhhhcc----cccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHH
Confidence 344567775 4667889988777655543 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCc
Q 000156 1210 DILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA 1289 (2015)
Q Consensus 1210 Dlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~vy~~ 1289 (2015)
|++++|+++||+|+|+.+..+.++++...|..+...++.++..|...|.|++..+.|..++.+++.++.+.+....++.+
T Consensus 613 ~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~ 692 (815)
T KOG1820|consen 613 DLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSV 692 (815)
T ss_pred hhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHHhhccCChHHHHHHHHHHHHHHHHhChHHHHH
Q 000156 1290 TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369 (2015)
Q Consensus 1290 skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~ 1369 (2015)
.+..|++.+++..||.++|.+|++.+..++..-|.....-.+.+..++....++|..+|+++.+++...|.+.|+.+|++
T Consensus 693 ~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (815)
T KOG1820|consen 693 LMMVPSLREALELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKI 772 (815)
T ss_pred cccchhhHhhccccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHHH
Confidence 99999999999999999999999999999999998765455678999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHhHHHHHHhhhh
Q 000156 1370 VGKLTDAQKSMLDDRFKWKVR 1390 (2015)
Q Consensus 1370 vg~Ls~~~~s~l~er~kr~~~ 1390 (2015)
.+.+.+.++++++.+|++..+
T Consensus 773 ~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 773 SILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred HHHhhHHHhhhHHHhcCcccc
Confidence 999999999999999998654
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=437.14 Aligned_cols=753 Identities=19% Similarity=0.227 Sum_probs=501.8
Q ss_pred hcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh-hHHHHHHHH
Q 000156 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR-YAKEVCDAI 98 (2015)
Q Consensus 20 l~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~-~~~~v~~~L 98 (2015)
+.++.|+.|.++|. +++.|+|...|+.+ .++..|....+..... -....+-..
T Consensus 14 l~~~~w~~~~~~~~-------------------------ql~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~~ 67 (815)
T KOG1820|consen 14 LCSQSWKNRLEAWK-------------------------QLLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLSF 67 (815)
T ss_pred hhhhhhhhhHHHHH-------------------------HHhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeeccc
Confidence 77788888877765 45667899999999 8888888776553221 122234456
Q ss_pred HHhhcC-CChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhhhhhh
Q 000156 99 AAKCLT-GRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177 (2015)
Q Consensus 99 ieK~l~-~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll 177 (2015)
.++||. -+..+++...++++.+-..+..+.+++.+...+.-|.||.+++++..+..++.+||...++++.+++.+..++
T Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~ 147 (815)
T KOG1820|consen 68 GLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA 147 (815)
T ss_pred hhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc
Confidence 678887 3788899999988888777888999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC-CCCCccchhhhhHhhhhhccccCCCC
Q 000156 178 DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVGP 256 (2015)
Q Consensus 178 ~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~-~~P~R~~rs~~~~~~~~ea~~~~~~~ 256 (2015)
|++||.++..++++||||+|.. ++.+++....+.++.++...+.+.... ....|..-+.+..........+..+.
T Consensus 148 ---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~ 223 (815)
T KOG1820|consen 148 ---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEK 223 (815)
T ss_pred ---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccc
Confidence 9999999999999999999985 556655444445455554444332211 01111111111000000000000000
Q ss_pred C--CCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCC--CCCCChHHHHHHHHH
Q 000156 257 G--PSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLKK 332 (2015)
Q Consensus 257 ~--~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~k--i~~~~y~~l~~~L~k 332 (2015)
. +...........+|.||+.+++||+++++ .+|...+.+++|++|+|||+.+..++..++ +..+.++.+...++.
T Consensus 224 ~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki 302 (815)
T KOG1820|consen 224 PERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKI 302 (815)
T ss_pred cccccccccCCCCCCccccccCchhhhhhhcC-hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHH
Confidence 0 00001111122278999999999999999 699999999999999999999999886655 445556666777777
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh
Q 000156 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (2015)
Q Consensus 333 ~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L 412 (2015)
+..|+|++|+..|++||+.||.+||..|.+|+..++|.+|+++||+|..+++++..|+++++.. +++.++.+.|..++
T Consensus 303 ~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~l 380 (815)
T KOG1820|consen 303 RLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEAL 380 (815)
T ss_pred hccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHh
Confidence 7779999999999999999999999999999999999999999999999999999999999984 89999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChh-HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHH
Q 000156 413 KNKVPLVRSLTLNWVTFCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDV 491 (2015)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~-~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~ 491 (2015)
++|||++|.+|..|+.+++...+.. .....++.++|.+++..+|++++||.||.++++++++++|++.++.++..+++.
T Consensus 381 k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 381 KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ 460 (815)
T ss_pred cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 9999999999999999999988743 233567999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccc-cccccccccCCCCC-CCCCCCCCCCCCCCCCCCCC--
Q 000156 492 RRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSF-VRKSAASMLSGKRP-VSAAPASKKGGPVKPSAKKD-- 567 (2015)
Q Consensus 492 ~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~s~~~~~~P-~~~~~~~~k~~~~k~~~~~~-- 567 (2015)
-+..+.|.+...-.......+...++ .+....+.. ++...........+ ++.+|....... ++...+.
T Consensus 461 ~~~~~~E~~~p~~~~~~~~~~~~~a~-------~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~-~~~~~~~~~ 532 (815)
T KOG1820|consen 461 DIKPKEEKLKPLLHFLAAPKEKSSAP-------DPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSAN-SSRKIPEAA 532 (815)
T ss_pred hhhhhhhhccccccccccCCCcCCCC-------CccccccceecccccccCCCCCCCccccCCCcccccc-cccCCcchh
Confidence 44444454432100000000000000 000000000 00000000000000 000000000000 0000000
Q ss_pred CCCCCcC-CCCCCCCC-----CCCCC-CCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhc-cccchHH
Q 000156 568 GSGKQET-SKLTEAPE-----DVEPS-EMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSV 639 (2015)
Q Consensus 568 ~~~~~~~-s~~~~~~~-----~~~~~-~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~-~~~~~~~ 639 (2015)
..+.... ++...... .+... -...++..+.....++......+.+.+.+.-.++.+.+...-... .......
T Consensus 533 ~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~ 612 (815)
T KOG1820|consen 533 EAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQ 612 (815)
T ss_pred hccccccccccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHH
Confidence 0000000 00000000 00000 112244444445566677788999999999999999888655442 2222233
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC----chhHHHHHHHHHHhhhcchh--hhHHHHHHHHHHHhhh
Q 000156 640 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF----PKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAV 713 (2015)
Q Consensus 640 ~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~----~~~~~~~il~~LveKlgD~K--~r~~a~~~L~~l~e~~ 713 (2015)
..++.|+.. ++.|+|..+....++++.......... .........+-+..+.|..+ .+..-..+.....+..
T Consensus 613 ~~~l~~~~l--r~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~ 690 (815)
T KOG1820|consen 613 DLLLEWLVL--RFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVL 690 (815)
T ss_pred hhhhHHHHH--HhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhc
Confidence 456677753 688999999999998887655532110 00000111122222333321 2333333444445555
Q ss_pred ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChh
Q 000156 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (2015)
Q Consensus 714 ~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~ 793 (2015)
+.......+.+.+ ..++-.+|.+++..+..++..-|...+....+....... ..+.+..+|.++..++...|.+.|+.
T Consensus 691 s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (815)
T KOG1820|consen 691 SVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALL-VKASDGKSSSKVKKTSWKPFDFLPDP 768 (815)
T ss_pred cccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhccccc-ccccchhhhhhhhcccccccccccch
Confidence 5555666666665 678888999999888877776665433222233333333 67778999999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHhcCC
Q 000156 794 IKGFLADVKPALLSALDAEYEKNP 817 (2015)
Q Consensus 794 l~~~L~~lkp~ll~~Le~ef~k~~ 817 (2015)
...+.....+.+...++..|.+-.
T Consensus 769 ~~~~~~~~~~~~~s~~~~~~~~~~ 792 (815)
T KOG1820|consen 769 SWKISILQADTDKSRIEKMFPKER 792 (815)
T ss_pred HHHHHHHhhHHHhhhHHHhcCccc
Confidence 988888888999999999987653
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-23 Score=255.87 Aligned_cols=843 Identities=15% Similarity=0.180 Sum_probs=542.1
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCC-CCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHH
Q 000156 15 PWEDRLLHKNWKVRNEANIDLAALCDSITD-PKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (2015)
Q Consensus 15 pl~erl~~k~WK~R~~ayeeL~~~~~~~~d-~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~~~~ 93 (2015)
-|.|++.+++-..|.+|..+|.+.++...- -++..+.+...++.|.+.|+|..||..|+.|+..++.+.+.. +...
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHHH
Confidence 678999999999999999999999986311 012235566778899999999999999999999999777652 4667
Q ss_pred HHHHHHHhhcCCChhHHHHH-HHHHHHHHhhh------hhhhHHHHHHHHhhcCChh------hHHHHHHHHHHHHHHhC
Q 000156 94 VCDAIAAKCLTGRPKTVEKA-QAVFMLWVELE------AVDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSEFG 160 (2015)
Q Consensus 94 v~~~LieK~l~~k~~~k~~a-~~~ll~~~E~~------~~~~v~~~L~~~~~~KnpK------v~~~~l~~L~~~l~~fG 160 (2015)
++..|+.+.++++.+.|+.+ +.+.+...++. -...|+..+.+.+..-+.+ +..+++.++...+.+||
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 88888888888899999986 88888888874 1346888888877766666 89999999999999999
Q ss_pred CCCcChh-HHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHH---HhhhC-hHHHHHHHHHHH---Hhc---CC
Q 000156 161 AKIIPPK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTI---LFEKM-RDTMKKELEVEL---VNV---SG 229 (2015)
Q Consensus 161 ~~~i~~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~---l~~~L-k~~q~keLe~~f---~k~---~~ 229 (2015)
.-..+.. .+++.+..-+......||+.|+-+++.+..+++.+++... +.++| ++.|..++..-+ ..+ .|
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 9776664 4889999999999999999999999999988886543221 22333 334444433322 111 11
Q ss_pred C--------CCCC--ccchhh--hhHhhhh------hc-----cccCC--------------CCCCC-CCCCCCCCCCCC
Q 000156 230 T--------ARPT--RKIRAE--QDKELGQ------EL-----ISEDV--------------GPGPS-EESTADVPPEID 271 (2015)
Q Consensus 230 ~--------~~P~--R~~rs~--~~~~~~~------ea-----~~~~~--------------~~~~~-~~~~~~~~~~iD 271 (2015)
. ..|. -|..+. .+++..+ |+ |.+.. .-+++ ..+.+ +|-|
T Consensus 246 ~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~---eDed 322 (1233)
T KOG1824|consen 246 HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE---EDED 322 (1233)
T ss_pred chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc---cchh
Confidence 1 0110 010000 0111100 00 11100 00110 00000 0000
Q ss_pred CCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 000156 272 EYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIG 350 (2015)
Q Consensus 272 ~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~ 350 (2015)
.....|..| ...++-|+..++-.|+.|++|++.+.+++ +...+.+.-|..+.+.|..+++|-.-+|....+++.-
T Consensus 323 ~~~~ed~eD----de~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi 398 (1233)
T KOG1824|consen 323 AMFLEDEED----DEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYI 398 (1233)
T ss_pred hhhhhcccc----chhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 000001011 00125677788999999999999999977 5666777778999999999999666667777777766
Q ss_pred HHHHHhhh----------------c-----chhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--c--CCChHhHH
Q 000156 351 NLARGLRT----------------H-----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--G--CLNLVDVV 405 (2015)
Q Consensus 351 ~La~~L~~----------------~-----f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~--~~~l~~il 405 (2015)
.+-+..+. . ....+..++..+-+.+++++...+..+..-|..++.. + ..++..++
T Consensus 399 ~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slv 478 (1233)
T KOG1824|consen 399 ALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLV 478 (1233)
T ss_pred HHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccc
Confidence 66643331 1 2345667788888888888888888888889888865 1 24456778
Q ss_pred HHHHHHhhcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHH
Q 000156 406 EDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLER 483 (2015)
Q Consensus 406 ~~l~~~L~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~ 483 (2015)
|.|.-.+.+|+ .+.|..++.|+..++..+++..|.++++.+.|.++.++.|+.+.|-..|.-....+.+++...
T Consensus 479 pgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl---- 554 (1233)
T KOG1824|consen 479 PGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPL---- 554 (1233)
T ss_pred hhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhccc----
Confidence 88888898877 689999999999999999999999999999999999999999999555555544444443321
Q ss_pred HHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCC
Q 000156 484 SIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPS 563 (2015)
Q Consensus 484 ~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~ 563 (2015)
+ |+.
T Consensus 555 -----~---------------------------------------------------------~~~-------------- 558 (1233)
T KOG1824|consen 555 -----Q---------------------------------------------------------PPS-------------- 558 (1233)
T ss_pred -----C---------------------------------------------------------CCc--------------
Confidence 0 000
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHH
Q 000156 564 AKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILV 643 (2015)
Q Consensus 564 ~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv 643 (2015)
+ .+. ++ ++.. -.....
T Consensus 559 ----~---------~d~---------~~-~v~~-----------------------------------------m~~~tl 574 (1233)
T KOG1824|consen 559 ----S---------FDA---------SP-YVKT-----------------------------------------MYDCTL 574 (1233)
T ss_pred ----c---------CCC---------Ch-hHHH-----------------------------------------HHHHHH
Confidence 0 000 00 0000 011112
Q ss_pred HHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhh---hChhHHHH
Q 000156 644 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA---VGPGFIFE 720 (2015)
Q Consensus 644 ~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~---~~~~~Vl~ 720 (2015)
.-|. -+|+...|.+.++.++..++..++++.......+++-+++|+|+.-+|-.|.++|..++.. ++...++.
T Consensus 575 ~rL~----a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~ 650 (1233)
T KOG1824|consen 575 QRLK----ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLT 650 (1233)
T ss_pred HHHh----cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHH
Confidence 2221 2677788999999999999998898888889999999999999999999999999999874 33334444
Q ss_pred HHHHHhhh--CCC-hhHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhH
Q 000156 721 RLYKIMKD--HKN-PKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794 (2015)
Q Consensus 721 ~L~~~l~~--~Kn-pKv~~~~l~~L~~li~~fG~~~l~---~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l 794 (2015)
.+++.+.+ -|| -+.+.+++..+..+++.+|.. +. +..++..+..+ +..++..|-+.|..++.++.......+
T Consensus 651 ~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~-~~~~~~e~vL~el~~L-isesdlhvt~~a~~~L~tl~~~~ps~l 728 (1233)
T KOG1824|consen 651 EILPELASFLRKNQRALRLATLTALDKLVKNYSDS-IPAELLEAVLVELPPL-ISESDLHVTQLAVAFLTTLAIIQPSSL 728 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 44443311 243 446889999999999998753 33 35577777777 888999999999999998876555444
Q ss_pred HhhhhhccHHHHHHHHH-------------HHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHh
Q 000156 795 KGFLADVKPALLSALDA-------------EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS 861 (2015)
Q Consensus 795 ~~~L~~lkp~ll~~Le~-------------ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~ 861 (2015)
....+.+-+.++..+.. -|+.+..... ..++-..+...++...++.
T Consensus 729 ~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~---------------------~~l~y~~l~s~lt~PV~~~ 787 (1233)
T KOG1824|consen 729 LKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKE---------------------PDLDYISLLSLLTAPVYEQ 787 (1233)
T ss_pred HHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCC---------------------CCccHHHHHHHHcCCcccc
Confidence 32222222222222221 1221111100 0011001111111111122
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL--~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp 939 (2015)
..|. .-+.|.-.+..++..- ....+.--..+..-|.+-+ ..+|..++..|+-.+|++....+.. +...+..
T Consensus 788 ~~~~---l~kqa~~siA~cvA~L-t~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s---~~~e~~~ 860 (1233)
T KOG1824|consen 788 VTDG---LHKQAYYSIAKCVAAL-TCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS---PQNELKD 860 (1233)
T ss_pred cccc---hhHHHHHHHHHHHHHH-HHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC---cchhhHH
Confidence 2221 2233444444333210 1112211123333333333 3556677788888888876544322 2345556
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHH-HHHHhccCCCC---CChhhhHH
Q 000156 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDW-LSKQLTGLSGF---PDAAHLLK 1015 (2015)
Q Consensus 940 ~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~-L~~~l~~~~~~---~~~~~ll~ 1015 (2015)
.++++|+.....|+.||.-||+.+.- -.+..++|.|.+.+.+. | -|++++-+ +.+.+...+.. +.+..+-.
T Consensus 861 ~iieaf~sp~edvksAAs~ALGsl~v-gnl~~yLpfil~qi~sq---p-k~QyLLLhSlkevi~~~svd~~~~~v~~IW~ 935 (1233)
T KOG1824|consen 861 TIIEAFNSPSEDVKSAASYALGSLAV-GNLPKYLPFILEQIESQ---P-KRQYLLLHSLKEVIVSASVDGLKPYVEKIWA 935 (1233)
T ss_pred HHHHHcCCChHHHHHHHHHHhhhhhc-CchHhHHHHHHHHHhcc---h-HhHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 88999999999999999999998742 23678999999888754 3 36665554 66666544332 23344444
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHH
Q 000156 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (2015)
Q Consensus 1016 pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~ 1051 (2015)
.+.+.++-....+|....+||+.+.-. .++.+.+.
T Consensus 936 lL~k~cE~~eegtR~vvAECLGkL~l~-epesLlpk 970 (1233)
T KOG1824|consen 936 LLFKHCECAEEGTRNVVAECLGKLVLI-EPESLLPK 970 (1233)
T ss_pred HHHHhcccchhhhHHHHHHHhhhHHhC-ChHHHHHH
Confidence 566666666677899999999987544 33444443
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-17 Score=213.52 Aligned_cols=838 Identities=17% Similarity=0.186 Sum_probs=516.6
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh-hHh
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ 366 (2015)
.+...+-+.+=..|++|-+.+..+...++ +...|...+. -.+..++..|+..+..+....=+..... -..
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 34455677777889999999988765433 6667777777 7788899999988888887755555433 345
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000156 367 LLPVLLEKL-KEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (2015)
Q Consensus 367 llp~LL~kl-kdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (2015)
+-..||..+ +|..+.||.+....+..++++ ..-..+++++-+..+.++.|++.|+.++..|..+....+. .+..+++
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~ 158 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHLD 158 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhHH
Confidence 666666665 899999999999999999988 1125789999999999999999999999998887665543 4567889
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-chHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000156 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (2015)
Q Consensus 445 ~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G-e~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 523 (2015)
.+.+.+.+|+.|+...||-+|.++++++..... +...-+.+..+-|.-..-+.+.+...
T Consensus 159 ~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~-------------------- 218 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG-------------------- 218 (1075)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc--------------------
Confidence 999999999999999999999999999998885 32222222222221111111111000
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000156 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (2015)
Q Consensus 524 ~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 603 (2015)
.++
T Consensus 219 -------------------------------------------------------------------d~~---------- 221 (1075)
T KOG2171|consen 219 -------------------------------------------------------------------DDD---------- 221 (1075)
T ss_pred -------------------------------------------------------------------chH----------
Confidence 000
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC-----
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF----- 677 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~-~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~----- 677 (2015)
.=..+++.|.+++...... .+....++.+....-+=++-+-.+++.+|+++..+++..+..
T Consensus 222 -------------~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 222 -------------AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA 288 (1075)
T ss_pred -------------HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence 0011223333333332211 111222222211111225556678999999999999875432
Q ss_pred --chhHHHHHHHHHHhhhcch--------------hhhHHHHHHHHHHHhhhChhHHHHHHHHHh---hhCCChhHHHHH
Q 000156 678 --PKKCVVLCLLGISERVADI--------------KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEG 738 (2015)
Q Consensus 678 --~~~~~~~il~~LveKlgD~--------------K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l---~~~KnpKv~~~~ 738 (2015)
..+.+..++-...+-..|. -....|.++|..++-..++..|+..+++.+ ..+.+||-|.++
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 2333333333333333441 146778999999999999999988887754 568999999999
Q ss_pred HHHHHHHHHHhCCCC-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhh-hhccHHHHHHHHHHHhcC
Q 000156 739 ILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKN 816 (2015)
Q Consensus 739 l~~L~~li~~fG~~~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~ef~k~ 816 (2015)
|..|+.+.+..+-.- -++..+++.+... |.|++|.||.||.+++|.|...+++.+..+. +.++|++...++
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld------ 441 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD------ 441 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc------
Confidence 999999988433110 1467788888885 9999999999999999999988888876544 444444443333
Q ss_pred CCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhccc-cCCCCChh
Q 000156 817 PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANK-RIQPAGTG 894 (2015)
Q Consensus 817 ~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~~-~I~~~~~~ 894 (2015)
|. +-++-..|.-.+-...+++.+ .|.|+ +.
T Consensus 442 -----------------------------------------------~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld 473 (1075)
T KOG2171|consen 442 -----------------------------------------------STQNVRVQAHAAAALVNFSEECDKSILEPY-LD 473 (1075)
T ss_pred -----------------------------------------------ccCchHHHHHHHHHHHHHHHhCcHHHHHHH-HH
Confidence 32 234444555556655655533 45555 58
Q ss_pred hHHH-HHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHhcCc
Q 000156 895 ELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK----KHMRECTLTVLDAWLAAVHL 969 (2015)
Q Consensus 895 eL~~-~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k----~~Vr~aa~~aL~~i~~~~gl 969 (2015)
.|+. .|...+....+.|+.+++.+|+.+|.+.+..|.+|.+.++|.+.+.|...+ ..+|...++|++.+...+|-
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGk 553 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGK 553 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhh
Confidence 8888 444455667888999999999999999999999999999999999887544 46899999999999999997
Q ss_pred hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHH
Q 000156 970 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIE 1049 (2015)
Q Consensus 970 ~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~ 1049 (2015)
+++.|.-.+.+ ..+.. +. . . ..|-+...|.........+.+++|++ +.
T Consensus 554 e~F~~~a~eli--------------qll~~-~~--~-------------~-~~~~dd~~~sy~~~~warmc~ilg~~-F~ 601 (1075)
T KOG2171|consen 554 EKFLPLAEELI--------------QLLLE-LQ--G-------------S-DQDDDDPLRSYMIAFWARMCRILGDD-FA 601 (1075)
T ss_pred hhhhHhHHHHH--------------HHHHh-hc--c-------------c-chhhccccHHHHHHHHHHHHHHhchh-hH
Confidence 77776533333 22221 11 0 0 12223335777777888888999987 45
Q ss_pred HHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhhh
Q 000156 1050 KNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQ 1129 (2015)
Q Consensus 1050 ~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (2015)
+++...=|.-++ .++... --...... ......... . -. .. ....+
T Consensus 602 p~L~~Vmppl~~-------ta~~~p---~~~~~d~~--d~e~~~~~~-~----~e---------------~~---~~~~~ 646 (1075)
T KOG2171|consen 602 PFLPVVMPPLLK-------TARLDP---DVALSDEE--DEEEEQDLD-G----WE---------------VV---ELGDK 646 (1075)
T ss_pred hHHHHHhHHHHH-------hhccCC---cccCcCch--hhhhccccc-c----ch---------------hh---ccCCc
Confidence 665333222221 111100 00000000 000000000 0 00 00 00000
Q ss_pred hhcccCCC---ChHHHhh-h----hhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhc---
Q 000156 1130 ALLNVKDS---NKEDRER-M----VVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKAL--- 1198 (2015)
Q Consensus 1130 ~~~~~~~~---~k~~R~~-~----~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l--- 1198 (2015)
-.+-+.++ .|+.=.. + ...|-.|. .++|+-...| +....|.-.-..|.+|++.|-..+
T Consensus 647 e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~----pYve~v~~l~-------v~~l~f~fhdgVR~aa~~~~p~ll~~~ 715 (1075)
T KOG2171|consen 647 ENIGIRTSVLDEKETACEALGEYAKELKEAFA----PYVEQVVELM-------VPLLKFYFHDGVRKAAAESMPQLLTCA 715 (1075)
T ss_pred eeeeeeehhHHHHHHHHHHHHHHHHhhhhhhh----hHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 00001011 1111100 0 01222232 2222211111 222333222234556666554433
Q ss_pred ----CcChhhHHHHHHHHHHHHHHhh-cCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhh-------c
Q 000156 1199 ----PSIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS-------G 1266 (2015)
Q Consensus 1199 ----~~~~~~~i~~lDlllk~~~lr~-~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~-------G 1266 (2015)
...+..+....+-+++-+..-+ .+.-+.|+..+|+-+...+..+.... |.+.+...++-.+..++ +
T Consensus 716 ~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~--L~~~~~~~~~~~~~~~~l~~~~~~~ 793 (1075)
T KOG2171|consen 716 LKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNC--LNEDGLEALLGGLLAQLLQHFKRMQ 793 (1075)
T ss_pred HHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCccc--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344545555555555554443 45789999999999999888887653 77777777776664443 2
Q ss_pred C---------ChHHHHHHHH----HHHHHHhhcc-------Cc------cccHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 000156 1267 H---------NIEKVREKMR----ELTKQIVNFY-------SA------TKTLPYILEGLRSKNNRTRIECVDLVGFLID 1320 (2015)
Q Consensus 1267 d---------~k~~vr~~v~----~il~~i~~vy-------~~------skvf~~l~~gl~sKN~r~R~ecl~~l~~li~ 1320 (2015)
| --+..++.+. .++..++.+. -. ..++|++..-+++++.--|.=.+..++.+|+
T Consensus 794 ~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie 873 (1075)
T KOG2171|consen 794 DRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIE 873 (1075)
T ss_pred hhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 2 1111222222 1333333322 11 2578888777777765558888888999999
Q ss_pred hhCCCcccc-cchHHHHHHhhccCChHHHHHHHHHHHHHHHHhChHHHHHhhcCCHHHHHh
Q 000156 1321 HHGAEISGQ-LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSM 1380 (2015)
Q Consensus 1321 ~~g~~~~~~-~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~vg~Ls~~~~s~ 1380 (2015)
..|-..... ..-++.+...+.|.+++||++|--.++.+-.+.|+.--..+..+.+..-.+
T Consensus 874 ~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~ 934 (1075)
T KOG2171|consen 874 GCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQV 934 (1075)
T ss_pred hcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 988753221 223599999999999999999999999998988887333344433433333
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-16 Score=203.45 Aligned_cols=877 Identities=16% Similarity=0.172 Sum_probs=471.7
Q ss_pred HHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhh--
Q 000156 49 RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE-- 124 (2015)
Q Consensus 49 ~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~~~~v~~~LieK~l~--~k~~~k~~a~~~ll~~~E~~-- 124 (2015)
.|.+....+-..+.+.|+.-+|.||-.|..+....+.....+..++. .|..+|++ +.+ +|-.|...+..|++.-
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~-~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL-RLFSQTMTDPSSP-VRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH-HHHHHhccCCcch-HHHHHHHHHHHHHHHhcc
Confidence 57777777888999999999999999999988887665555555554 56778888 455 9988888777777652
Q ss_pred hhhh--HHHHHHH--------HhhcCChhhHHHHHHHHHHHHHHhCCCCcC--hhHHHhhhhhhhcCC--ChhHHHHHHH
Q 000156 125 AVDV--FLDVMEK--------AIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKG 190 (2015)
Q Consensus 125 ~~~~--v~~~L~~--------~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~--~k~il~~l~~ll~~~--d~~VR~~a~~ 190 (2015)
+... -+..+++ .....+-+....++.+|.+++...+. .+. +..++....++.++. |..+|..|..
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 1211 1222233 23455666678888888888887655 332 355666667777765 7889999999
Q ss_pred HHHHHHHHhCCchhhH--HHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCC-CCCCCCCCCC
Q 000156 191 LTLELCRWIGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPG-PSEESTADVP 267 (2015)
Q Consensus 191 l~~ely~~lG~~~l~~--~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~-~~~~~~~~~~ 267 (2015)
+++.+.++- +...|. .+...|-++.++.. ++ ...+. -..+++.+++
T Consensus 272 ~ivs~~e~A-p~~~k~~~~~~~~lv~~~l~~m-----------te-------------------~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 272 FLVSLSEYA-PAMCKKLALLGHTLVPVLLAMM-----------TE-------------------EEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHhh-HHHhhhchhhhccHHHHHHHhc-----------CC-------------------cccchhhccccccccc
Confidence 999999882 111110 00011111111110 00 00000 0000001111
Q ss_pred CCCCCCCCC-----------CcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc
Q 000156 268 PEIDEYELV-----------DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT 335 (2015)
Q Consensus 268 ~~iD~~dl~-----------~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~ 335 (2015)
+.-+||.+. .+..|+..+= +.+...+.+.+|++|++||..|..+.. ..+...+.+..|++.+...+.
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~ 399 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN 399 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Confidence 112233221 2222332221 345556799999999999999999884 555555678899999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH-HHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC------hHhHHHH
Q 000156 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP-VLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN------LVDVVED 407 (2015)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp-~LL~klkdk-k~~V~~aa~~aL~al~~~~~~~------l~~il~~ 407 (2015)
|.++.|+..||++||.++..+.+.++.+....+| .|+..+.+. ++.|..++..|+..++.. |.. ++.+++.
T Consensus 400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~ 478 (1075)
T KOG2171|consen 400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEK 478 (1075)
T ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977666666 555555443 557888899999988876 422 4445552
Q ss_pred -HHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhCchHHH
Q 000156 408 -VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT----PEVRDAAFSVLAAIAKSVGMRPLE 482 (2015)
Q Consensus 408 -l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~----~~VR~aA~~al~~l~~~~Ge~~~~ 482 (2015)
+...+++.++.+|+.++..|+.+..... ..|.+|.+.++|.|.++|...+ .++|-...+|++.+...+|.+.|.
T Consensus 479 ~l~~L~~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~ 557 (1075)
T KOG2171|consen 479 KLLLLLQSSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFL 557 (1075)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 2334457889999999999998766544 4578999999999999995444 678888889999999999987787
Q ss_pred HHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000156 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 562 (2015)
Q Consensus 483 ~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~ 562 (2015)
++...|-..-. +.. ++......|..+ . .-+.-+ ..-+-...-+.+--|.. -|+-.+....++
T Consensus 558 ~~a~eliqll~----~~~---~~~~~~dd~~~s-------y--~~~~wa-rmc~ilg~~F~p~L~~V-mppl~~ta~~~p 619 (1075)
T KOG2171|consen 558 PLAEELIQLLL----ELQ---GSDQDDDDPLRS-------Y--MIAFWA-RMCRILGDDFAPFLPVV-MPPLLKTARLDP 619 (1075)
T ss_pred HhHHHHHHHHH----hhc---ccchhhccccHH-------H--HHHHHH-HHHHHhchhhHhHHHHH-hHHHHHhhccCC
Confidence 77765532211 110 111100000000 0 000000 00000000000000000 000000000000
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHH-------hhhccCCHHHHHHHHHHHHHHHHhccc-
Q 000156 563 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV-------GQLKSAVWKERLEAISSLRQQVEAVQN- 634 (2015)
Q Consensus 563 ~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~-------~~L~s~~Wk~Rl~a~e~L~~~v~~~~~- 634 (2015)
...++.++.++...+..+-+.+ -++..+-.-++..|.+.|..+-.....
T Consensus 620 -----------------------~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~ 676 (1075)
T KOG2171|consen 620 -----------------------DVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEA 676 (1075)
T ss_pred -----------------------cccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhh
Confidence 0011111111111111111110 112223333444444444444332111
Q ss_pred cchHHHHHHHHHh--cCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhh
Q 000156 635 LDQSVEILVRLVC--MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA 712 (2015)
Q Consensus 635 ~~~~~~~Lv~~L~--~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~ 712 (2015)
-.++.+-++..+. .+-.|-| -|+..+++ ++|.++...--.--+..+ .+..+
T Consensus 677 F~pYve~v~~l~v~~l~f~fhd---gVR~aa~~-------------------~~p~ll~~~~~A~~~~p~--~l~~l--- 729 (1075)
T KOG2171|consen 677 FAPYVEQVVELMVPLLKFYFHD---GVRKAAAE-------------------SMPQLLTCALKACQGGPE--YLKQL--- 729 (1075)
T ss_pred hhhHHHHHHHHHHHHHHhhhhh---HHHHHHHH-------------------HHHHHHHHHHHHhccChH--HHHHH---
Confidence 0111111111000 0000111 12333333 333332110000000000 00000
Q ss_pred hChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCh
Q 000156 713 VGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (2015)
Q Consensus 713 ~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~ 792 (2015)
-.++++.++..+..-..+.+..+.++.+.+.++.+|...++...+-..+... + . .+-.-+..++.
T Consensus 730 --~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~-~--------~----~~l~~~~~~~~ 794 (1075)
T KOG2171|consen 730 --WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGL-L--------A----QLLQHFKRMQD 794 (1075)
T ss_pred --HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH-H--------H----HHHHHHHHHHh
Confidence 1234444555554456777888999999999999997655433222222111 0 0 00000000110
Q ss_pred hH-HhhhhhccHH----H---HHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCC
Q 000156 793 DI-KGFLADVKPA----L---LSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES 864 (2015)
Q Consensus 793 ~l-~~~L~~lkp~----l---l~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d 864 (2015)
.. ..+.++.... + =+.|.+.+.++.. +.++. .++ +.. .....+.|.+...+.+
T Consensus 795 r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~-------~l~k~-------~k~--~f~---p~f~~~~p~iv~~l~~ 855 (1075)
T KOG2171|consen 795 RQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILA-------ALAKA-------LKG--SFL---PFFENFLPLIVKLLKS 855 (1075)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHH-------HHHHH-------ccc--ccc---HHHHHHHHHHHHHHhc
Confidence 00 0000000000 0 0001111111100 00000 000 000 0122244555666666
Q ss_pred CC-hHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHH
Q 000156 865 PD-WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (2015)
Q Consensus 865 ~~-Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~ 943 (2015)
++ |. |.=|+-.+.+++..+.+...+. +..+...+...+.|..+-|++.|..-+|.+|.--|..+.+.+...+|.++.
T Consensus 856 ~~~~~-r~~av~~~~d~ie~~~~a~~~~-~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~ 933 (1075)
T KOG2171|consen 856 KKTVA-RQWAVCIFDDLIEGCGEASAKY-KERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQ 933 (1075)
T ss_pred CCcHH-HHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 54 77 9999999999998664444443 577888999999999999999999999999999999999999999999998
Q ss_pred HhCCCcH---H---HHHHHHHHHHHHHHhc----CchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---C---
Q 000156 944 CLGDNKK---H---MRECTLTVLDAWLAAV----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---F--- 1007 (2015)
Q Consensus 944 ~L~D~k~---~---Vr~aa~~aL~~i~~~~----gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~--- 1007 (2015)
.+..... . ..+-|..|+..++.+. .+++++|.+...|-... .-+.-..+..+|...++.... .
T Consensus 934 ~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~-D~eEa~~iy~~l~~L~e~n~p~v~~~~n 1012 (1075)
T KOG2171|consen 934 VLQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKE-DKEEAVPIYTFLSDLYESNHPIVLGPNN 1012 (1075)
T ss_pred HHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCcc-chhhhhhHHHHHHHHHHhCCCeeeCCCc
Confidence 8876443 2 3444444444444443 36777777776664211 122335577778877765443 1
Q ss_pred CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHH
Q 000156 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERI 1067 (2015)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~-G~~~~~~~l~~L~~~~~~~i~~~l 1067 (2015)
..+..++..+...+.+.+-.-|..+...+..+-... ..+.+...++.|++..+..+++.+
T Consensus 1013 ~~ip~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~~~~~~~~~~~~L~~~~~~~lq~~~ 1073 (1075)
T KOG2171|consen 1013 QNIPKILSVCAESLADKKIEPRSTLARVIEILKQFLAPPSQFAALLATLPPDQQQALQAVL 1073 (1075)
T ss_pred ccchHHHHHHHhhhhccCCCccchHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHh
Confidence 123333333444555554444444433333322222 445677788899999888887764
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=220.09 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=148.3
Q ss_pred cCcchhhhhhhccCChHHHHHHHHHHHHHhcCC--CCCCCChHHHH----HHHHHHhcccCHHHHHHHHHHHHHHHHHhh
Q 000156 284 PLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVC----RTLKKLITDVNIAVAVEAIQAIGNLARGLR 357 (2015)
Q Consensus 284 kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~--ki~~~~y~~l~----~~L~k~l~D~N~~V~~~A~~~l~~La~~L~ 357 (2015)
.+. +.|.+...+.+|++|.+||+.|+.++.+. ......|.+.+ ..+.+.+.|.|+.|+..||.+++.|+..++
T Consensus 7 ~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 7 EIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 344 46777788999999999999999988543 22222333323 366677889999999999999999999999
Q ss_pred hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH-HHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-
Q 000156 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETSS- 435 (2015)
Q Consensus 358 ~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~i-l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~- 435 (2015)
..|++|+..++|.|+++++++|+.|++++..||.+++.+ |.....+ ++.+..++++|||.+|..++.|+..++..++
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES-CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT-S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999987 4314566 7888889999999999999999999999998
Q ss_pred -hhHHHH--hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHH
Q 000156 436 -KAAVLK--VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (2015)
Q Consensus 436 -~~~l~~--~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI 496 (2015)
...+.. .++.+.+.+.++++|++++||++|+++|+.+++++|++ ...++..||+..||.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~-a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER-AESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH-H---------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh-hccchhcchhcccccC
Confidence 333432 35889999999999999999999999999999999998 5788899999888765
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-10 Score=146.90 Aligned_cols=518 Identities=16% Similarity=0.212 Sum_probs=314.0
Q ss_pred HHHHHHHHHhcccCHH------HHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-c
Q 000156 325 EVCRTLKKLITDVNIA------VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-G 397 (2015)
Q Consensus 325 ~l~~~L~k~l~D~N~~------V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~ 397 (2015)
.+++.+...+.+.++. +...+|..++.+-..+|.-.-++...++..++-.+......||..+..||..+..+ +
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444444433 66667777777777777666667788888999999999999999999999999877 1
Q ss_pred CCChHhHHHHHHHHhhc--CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh---cCCCHHHHHHHHHHHHHH
Q 000156 398 CLNLVDVVEDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---NDGTPEVRDAAFSVLAAI 472 (2015)
Q Consensus 398 ~~~l~~il~~l~~~L~~--Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L---~Ds~~~VR~aA~~al~~l 472 (2015)
..-+..+++++..+|.+ ++..+|.. .+.|+.+....+ ..+..+++.++|.+...+ +..+.+.|+...++++.|
T Consensus 207 ~~ly~~li~~Ll~~L~~~~q~~~~rt~-Iq~l~~i~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~f 284 (1233)
T KOG1824|consen 207 RDLYVELIEHLLKGLSNRTQMSATRTY-IQCLAAICRQAG-HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESF 284 (1233)
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHH-HHHHHHHHHHhc-chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 23356788888888874 34455532 233333333222 345677888999999988 888999999999999999
Q ss_pred HHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCC
Q 000156 473 AKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552 (2015)
Q Consensus 473 ~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~ 552 (2015)
....+.+ +.|+.+.+-..-.++| .-- | +-.. ..+ +
T Consensus 285 l~rcp~e-i~p~~pei~~l~l~yi----sYD----P-Ny~y-----------d~~--e---------------------- 319 (1233)
T KOG1824|consen 285 LRRCPKE-ILPHVPEIINLCLSYI----SYD----P-NYNY-----------DTE--E---------------------- 319 (1233)
T ss_pred HHhChhh-hcccchHHHHHHHHHh----ccC----C-CCCC-----------CCc--c----------------------
Confidence 9888754 7788777654333333 110 0 0000 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCC-CCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHh
Q 000156 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDV-EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA 631 (2015)
Q Consensus 553 ~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~-~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~ 631 (2015)
+.. + ...+..+|. ...++|+|| +-.||.|.+|..-+...+.+
T Consensus 320 --------------Ded----~-~~~ed~eDde~~deYsDDe------------------D~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 320 --------------DED----A-MFLEDEEDDEQDDEYSDDE------------------DMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred --------------chh----h-hhhhccccchhcccccccc------------------chhHHHHHHHHHHHHHHHhc
Confidence 000 0 000000000 011222221 22466666555555544422
Q ss_pred ccc--------c-----------c-----hHHHHHHHHHhcCCC------------------------------------
Q 000156 632 VQN--------L-----------D-----QSVEILVRLVCMLPG------------------------------------ 651 (2015)
Q Consensus 632 ~~~--------~-----------~-----~~~~~Lv~~L~~~pg------------------------------------ 651 (2015)
-.+ . + ....+.+..|...+.
T Consensus 363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~ 442 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQK 442 (1233)
T ss_pred cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHH
Confidence 100 0 0 001222233322222
Q ss_pred -CcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchh----hhHHHHHHHHHHHhhhChhHH---HHHHH
Q 000156 652 -WSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK----TRAHAMKCLTTFSEAVGPGFI---FERLY 723 (2015)
Q Consensus 652 -~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K----~r~~a~~~L~~l~e~~~~~~V---l~~L~ 723 (2015)
+++...+-.+..|..|..++..+++...++...++|+++-.+.|.. .+..+.-.|....-..+|+.. ++.+.
T Consensus 443 qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls 522 (1233)
T KOG1824|consen 443 QLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALS 522 (1233)
T ss_pred HHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhh
Confidence 2232333445667777777776776666777888999999988832 233333333333333343321 12222
Q ss_pred H---HhhhCCChhHHHHHHHHHHHHHHHhCC----CCCC----hhhHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHhC
Q 000156 724 K---IMKDHKNPKVLSEGILWMVSAVEDFGV----SHLK----LKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVG 791 (2015)
Q Consensus 724 ~---~l~~~KnpKv~~~~l~~L~~li~~fG~----~~l~----~k~li~~l~~~-gL~~sn~~VR~aA~~ll~~Ly~~~G 791 (2015)
+ ......=+|+-.|+|....++++-.-. ..++ ++.++....+. -..+.+..||..|+.|++.+-..+|
T Consensus 523 ~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg 602 (1233)
T KOG1824|consen 523 PPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG 602 (1233)
T ss_pred hHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh
Confidence 2 223456689999999998888874321 1133 34444433222 1467789999999999999999998
Q ss_pred hhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHH
Q 000156 792 PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRL 871 (2015)
Q Consensus 792 ~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~ 871 (2015)
+.+..++...-|.+++.+..| -.|.
T Consensus 603 D~l~~eL~~~L~il~eRl~nE-------------------------------------------------------iTRl 627 (1233)
T KOG1824|consen 603 DFLGNELPRTLPILLERLGNE-------------------------------------------------------ITRL 627 (1233)
T ss_pred hhhhhhhHHHHHHHHHHHhch-------------------------------------------------------hHHH
Confidence 655555444333333333222 1355
Q ss_pred HHHHHHHHHHHhccccCC--CCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCCC
Q 000156 872 ESIEAVNKILEEANKRIQ--PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDN 948 (2015)
Q Consensus 872 eale~L~~ll~~a~~~I~--~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~-~~~llp~ll~~L~D~ 948 (2015)
.|+.++.-|.. +.-.|. +. +++++..|..-+.-.+..++..++.++..|.+..+..+..+ ++.++--+...+.++
T Consensus 628 ~AvkAlt~Ia~-S~l~i~l~~~-l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lises 705 (1233)
T KOG1824|consen 628 TAVKALTLIAM-SPLDIDLSPV-LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISES 705 (1233)
T ss_pred HHHHHHHHHHh-ccceeehhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHH
Confidence 56666666654 222332 23 46777777766666677788999999999999999888766 455777888888999
Q ss_pred cHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC
Q 000156 949 KKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA 983 (2015)
Q Consensus 949 k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~ 983 (2015)
...|-+-|..+|.+++..-+ -..+++.+...++++
T Consensus 706 dlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 706 DLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence 99999999999999887643 356788888888755
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6e-17 Score=189.60 Aligned_cols=208 Identities=21% Similarity=0.324 Sum_probs=143.5
Q ss_pred ccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC----hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhCh
Q 000156 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (2015)
Q Consensus 853 ~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~----~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~ 928 (2015)
.+...|.+...+.+|+.|.+|++.|+.++.+....-.+.. +.+++..+...+.|.|..|+..||.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 3555666667889999999999999999985311111111 223345667788999999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhh-HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000156 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (2015)
Q Consensus 929 ~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-l~~l-l~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2015)
.|++|+..++|.++++++|+++.|+++|..||..++.+++ ...+ ++.+...+.++ ||.+|..++.|+...+..++.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999 5666 67777788777 799999999999999999882
Q ss_pred -CC------ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHH
Q 000156 1007 -FP------DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1063 (2015)
Q Consensus 1007 -~~------~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i 1063 (2015)
.. .+..+++.+..++.|++++||++|..++..++.++|+.+ ...+..|+|..++.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 11 124566779999999999999999999999999999986 557799999888765
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-14 Score=173.33 Aligned_cols=515 Identities=17% Similarity=0.177 Sum_probs=336.4
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhhhhhhcC-CChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHH
Q 000156 138 KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDH-QDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (2015)
Q Consensus 138 ~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~-~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q 216 (2015)
.+..+.+...-+.....++.++|-+.+ ..+++..-..++| .+.++|+....+...+-+|+... +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v--~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~- 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNV--LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI- 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHH--HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh-
Confidence 556667777778888888888888643 2333333333332 27889999888888887777431 22222
Q ss_pred HHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhcc
Q 000156 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA 296 (2015)
Q Consensus 217 ~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s 296 (2015)
+-++..++.. .+|+...+..-..=.. +-...-.. .+...++ +...+.++.
T Consensus 96 -~~~~~~~~~~---~tps~~~q~~~~~~l~---~~~~~~~~------------------~~~~~~l-----~~l~~ll~~ 145 (569)
T KOG1242|consen 96 -SIIEILLEEL---DTPSKSVQRAVSTCLP---PLVVLSKG------------------LSGEYVL-----ELLLELLTS 145 (569)
T ss_pred -HHHHHHHHhc---CCCcHHHHHHHHHHhh---hHHHHhhc------------------cCHHHHH-----HHHHHHhcc
Confidence 2223333333 2343211110000000 00000000 0011111 345667789
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHH-HHHHHHHHHHHhhhcchhhhHhHHHHHHHHh
Q 000156 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (2015)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~-A~~~l~~La~~L~~~f~~~~~~llp~LL~kl 375 (2015)
.+..+|+.+...+..+.++.-+..-.-..++..|.+.+.|.+....++ +..+.......|++.|+||...++|.+|.++
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~ 225 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF 225 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh
Confidence 999999999999999988766665444578899999999999888885 7888888889999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh
Q 000156 376 KEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (2015)
Q Consensus 376 kdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L 454 (2015)
+|+-+.||+++..|.++++.. ...++..+++.++.++....|+.|..+++.+. ++..+.+.++..+++.++|.+.+.|
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHHHH
Confidence 999999999999999999985 33557888999999988889999999999998 6777777788889999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccc
Q 000156 455 NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV 534 (2015)
Q Consensus 455 ~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 534 (2015)
+|++++||++|.+|+-.+..++.+..+.++++.|- +++.. |+... ++ .+
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Ll--------d~l~d---------p~~~~---------~e-----~~ 353 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLL--------DALAD---------PSCYT---------PE-----CL 353 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------HHhcC---------cccch---------HH-----HH
Confidence 99999999999999999999999988888877653 33211 00000 00 00
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCC
Q 000156 535 RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 614 (2015)
Q Consensus 535 ~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~ 614 (2015)
+ +++.+ .. .+.+.+ ...+++.+-+..++..++
T Consensus 354 -~----~L~~t------------------------------tF---V~~V~~----------psLalmvpiL~R~l~eRs 385 (569)
T KOG1242|consen 354 -D----SLGAT------------------------------TF---VAEVDA----------PSLALMVPILKRGLAERS 385 (569)
T ss_pred -H----hhcce------------------------------ee---eeeecc----------hhHHHHHHHHHHHHhhcc
Confidence 0 00000 00 001111 112334455555555444
Q ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhc
Q 000156 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (2015)
Q Consensus 615 Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg 694 (2015)
.-.+..++..+.++. .+++. +.-....+..++|++=..+-
T Consensus 386 t~~kr~t~~IidNm~---------------------------------------~LveD-p~~lapfl~~Llp~lk~~~~ 425 (569)
T KOG1242|consen 386 TSIKRKTAIIIDNMC---------------------------------------KLVED-PKDLAPFLPSLLPGLKENLD 425 (569)
T ss_pred chhhhhHHHHHHHHH---------------------------------------HhhcC-HHHHhhhHHHHhhHHHHHhc
Confidence 444333332222111 11110 11111234455566555555
Q ss_pred c--hhhhHHHHHHHHHHHhhhCh---hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHH-HHhcCC
Q 000156 695 D--IKTRAHAMKCLTTFSEAVGP---GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF-CKDTGL 768 (2015)
Q Consensus 695 D--~K~r~~a~~~L~~l~e~~~~---~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~-l~~~gL 768 (2015)
| +-+|..+..+|..+.|..+. +.+...+...+...|.-+-+.+++..+..++...|.... ..++.- +.....
T Consensus 426 d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~--~~~~~~~~a~~~~ 503 (569)
T KOG1242|consen 426 DAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV--EDILPEILANASS 503 (569)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH--HHHHHHHHHHHhh
Confidence 5 45788888888777776543 345666666666677888899999999999988877532 222222 222213
Q ss_pred CCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhc
Q 000156 769 QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (2015)
Q Consensus 769 ~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k 815 (2015)
...++.+|..-+.++..+-...|..+..|+.++.+.+++.+.+.-+.
T Consensus 504 ~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~ 550 (569)
T KOG1242|consen 504 VLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEK 550 (569)
T ss_pred ccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCc
Confidence 34456699999999988888888889999999888888888765444
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.7e-12 Score=152.31 Aligned_cols=692 Identities=15% Similarity=0.172 Sum_probs=421.9
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH----Hhhhcc-hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000156 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR----GLRTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (2015)
Q Consensus 322 ~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~----~L~~~f-~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (2015)
+..++++.|...+.....+....|+.++..+++ .+..++ .+....++|.+|+-++...+.+|..+..|++.++-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 456777777777763333356667666666665 344433 356889999999999999999999999999987643
Q ss_pred cC----CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000156 397 GC----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2015)
Q Consensus 397 ~~----~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l 472 (2015)
.+ .+++.+++.+..--.+.+|.||...+..+..+++..+ ..+.+++..++..+.....|.+.+|--.|++-.-++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~-dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP-DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH-HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 11 3467777877776678999999999999998887654 346788999999999999999999988888877777
Q ss_pred HHH-hCchHHHHHHHhccHHHHHHHHH-----HHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCC
Q 000156 473 AKS-VGMRPLERSIEKLDDVRRNKLSE-----MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR 546 (2015)
Q Consensus 473 ~~~-~Ge~~~~~~l~~Ld~~~~kkI~e-----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~ 546 (2015)
... +....+.+|+++|-|.....+.- .+-+. .. +...++... ...+
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~---~e---------------------eD~~vpDre----eDIk 335 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKN---NE---------------------EDESVPDRE----EDIK 335 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcC---cc---------------------ccccCCchh----hhcc
Confidence 654 34566889998887765443210 00000 00 000000000 0111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC---CCCCHHHHHH----HhhccCc--------HHHHhhhc
Q 000156 547 PVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP---SEMSLEEIES----RLGSLIP--------ADTVGQLK 611 (2015)
Q Consensus 547 P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~---~~~s~ee~e~----~~~~ll~--------~~l~~~L~ 611 (2015)
|--. |+...+.+.-+ ....-+..++-.. ..+...-+.+ .++.+++ |-+.+.|.
T Consensus 336 PRfh----------ksk~~~~~~~~--~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 336 PRFH----------KSKEHGNGEDA--DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred chhh----------hchhccCcccc--ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 1100 01101000000 0000000000000 1111122222 2233343 45567889
Q ss_pred cCCHHHHHHHHHHHHHHHHh-ccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHHHH
Q 000156 612 SAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGI 689 (2015)
Q Consensus 612 s~~Wk~Rl~a~e~L~~~v~~-~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~-~~~~~~~~~il~~L 689 (2015)
+.+|+.|.+|+-.|+.+.++ ++...+....|+.+|.. -+.|+-.-|+.-.+=.|..+..-.. .-....+..++.++
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~--~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLS--LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH--HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 99999999999999999887 55544444445555532 2455555555433333332222111 11335667788899
Q ss_pred Hhhhcch--hhhHHHHHHHHHHHhhhChhH------HHHHHHHHh--hhCCChhHHHHHHHHHHHHHHHhCCC--CCC--
Q 000156 690 SERVADI--KTRAHAMKCLTTFSEAVGPGF------IFERLYKIM--KDHKNPKVLSEGILWMVSAVEDFGVS--HLK-- 755 (2015)
Q Consensus 690 veKlgD~--K~r~~a~~~L~~l~e~~~~~~------Vl~~L~~~l--~~~KnpKv~~~~l~~L~~li~~fG~~--~l~-- 755 (2015)
+.++-|. |++++|..++..+-|..+.+. ++.+++... -++||-.+...++..|+.-+...=.+ .++
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL 561 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL 561 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh
Confidence 9999885 589999999998888766543 444444432 24789999999888888777432111 111
Q ss_pred hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHH---HhcCCCCCC-CCCccc-ccC
Q 000156 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE---YEKNPFEGT-VVPKKT-VRA 830 (2015)
Q Consensus 756 ~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e---f~k~~~~~~-p~p~R~-~r~ 830 (2015)
+.++++.-. . +.++++++-- -.+|+..+...+|..+.+|-..+-..-...|++- ..++....+ ..|-|. +-.
T Consensus 562 mPPLi~KW~-~-lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~ 638 (885)
T KOG2023|consen 562 MPPLIEKWE-L-LSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIV 638 (885)
T ss_pred ccHHHHHHH-h-cCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEE
Confidence 233444333 3 7888887643 4577788888888887777654443333334322 223322111 112111 000
Q ss_pred cccc-----CCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc
Q 000156 831 SEST-----SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (2015)
Q Consensus 831 ~~~~-----~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~ 905 (2015)
+-+. ++-+++.++++.+.+ |..-++.-+.|.--.+|..+.-.++.+...+..++.|+. .+++..|..-++
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~sn----l~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~-~~fl~~lg~Nl~ 713 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSN----LLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNL-ADFLPILGANLN 713 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhcc----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHhhcCC
Confidence 0000 000111223333333 344566778899999999999999999987777888885 888888888888
Q ss_pred cchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHH
Q 000156 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVT 977 (2015)
Q Consensus 906 DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k--~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~ 977 (2015)
-.+..+.-.|+-.+|+|+..+|.+..+|+..++-.++..++-++ ..+-+-..-+++.+...++ ++.++..-.
T Consensus 714 ~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc 793 (885)
T KOG2023|consen 714 PENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWC 793 (885)
T ss_pred hhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHH
Confidence 88899999999999999999999999999999988888776443 3344444445555554443 222222222
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhh--HHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000156 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL--LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (2015)
Q Consensus 978 ~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~l--l~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L 1055 (2015)
..|.+=+. -+.|..++..+-..+.-.+.. ...+. +--.+....+...++|....+.|..+...+|...-..++.++
T Consensus 794 ~sl~~i~D-neEK~sAFrG~c~mi~vNp~~-vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf 871 (885)
T KOG2023|consen 794 TSLRNIDD-NEEKESAFRGLCNMINVNPSG-VVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQF 871 (885)
T ss_pred HHhccccc-chhHHHHHHHHHHheeeCchh-hhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcC
Confidence 33332111 133555555554444322221 11111 111444556777999999999999999999999888899999
Q ss_pred ChHHHHHHHHH
Q 000156 1056 QGPALALILER 1066 (2015)
Q Consensus 1056 ~~~~~~~i~~~ 1066 (2015)
+|..+..+...
T Consensus 872 ~P~~~erl~a~ 882 (885)
T KOG2023|consen 872 PPPLKERLQAF 882 (885)
T ss_pred ChhHHHHHHHH
Confidence 99887766653
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.2e-12 Score=152.50 Aligned_cols=669 Identities=18% Similarity=0.206 Sum_probs=384.2
Q ss_pred HHHHHHHHHHHHHHHHhchhh----h-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh------hhhhHHHHHHH
Q 000156 67 PVQDKALDALIAYLKAADADA----G-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE------AVDVFLDVMEK 135 (2015)
Q Consensus 67 ~vqe~~leal~~~l~~~~~~~----~-~~~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~------~~~~v~~~L~~ 135 (2015)
..+|.|+.||....+-...-+ . +...-++|..++-.-...|++|..|+.|+-.|+=+. ..+..++.|..
T Consensus 143 n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFa 222 (885)
T KOG2023|consen 143 NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFA 222 (885)
T ss_pred cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHH
Confidence 678889888887766543311 1 223445555555422368999999999999988542 13556666665
Q ss_pred HhhcCChhhHHHHHHHHHHHHHHhCCCCcC-hhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHH-hCCchhhHHHhhhCh
Q 000156 136 AIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVKTILFEKMR 213 (2015)
Q Consensus 136 ~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~-lG~~~l~~~l~~~Lk 213 (2015)
.-+.-+|.|+...+..+.-+++-.--+.+| +..|+.++...-.+.|.+|-=||..+...+... +-++.+.+++ ++|-
T Consensus 223 lanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l-~kli 301 (885)
T KOG2023|consen 223 LANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYL-DKLI 301 (885)
T ss_pred HccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHH-HHHH
Confidence 557888999888888887777644445554 678999999999999999999998886655422 1223444554 5555
Q ss_pred HHHHHHH-----HH-HHHhcC-CCCCC-------CccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 000156 214 DTMKKEL-----EV-ELVNVS-GTARP-------TRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279 (2015)
Q Consensus 214 ~~q~keL-----e~-~f~k~~-~~~~P-------~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~v 279 (2015)
|+.+.-. +- ..++.. ....| .||-++... |.+.. .++++++.|
T Consensus 302 PvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~------------~~~~~---~~~eDdddD-------- 358 (885)
T KOG2023|consen 302 PVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH------------GNGED---ADDEDDDDD-------- 358 (885)
T ss_pred HHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc------------cCccc---ccccccccc--------
Confidence 6544321 00 111111 11222 133222211 11110 011111111
Q ss_pred cccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc
Q 000156 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH 359 (2015)
Q Consensus 280 dIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~ 359 (2015)
++-+.....+|.-|+.....|.-+++. +...-+.-+++.|+..+..-+=.|...++-++|.+|+|.-..
T Consensus 359 ---------e~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g 427 (885)
T KOG2023|consen 359 ---------EDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG 427 (885)
T ss_pred ---------ccccccccccccHhhccHHHHHHHHHh--hHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh
Confidence 111223457899999776666555431 011224567888888888777788899999999999999999
Q ss_pred chhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000156 360 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2015)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2015)
|-+|...++|.++..+.|||+-||.-. |+++.+.-..+. +...
T Consensus 428 ~~p~LpeLip~l~~~L~DKkplVRsIT-----------CWTLsRys~wv~----------------------~~~~---- 470 (885)
T KOG2023|consen 428 FVPHLPELIPFLLSLLDDKKPLVRSIT-----------CWTLSRYSKWVV----------------------QDSR---- 470 (885)
T ss_pred cccchHHHHHHHHHHhccCccceeeee-----------eeeHhhhhhhHh----------------------cCCh----
Confidence 999999999999999999999888533 666555433321 1111
Q ss_pred HHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCC
Q 000156 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519 (2015)
Q Consensus 440 ~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~ 519 (2015)
.++++.++..+.+.+-|++..|.+||+.+++++-.-.|++ +-||++.+-..-......|-.+
T Consensus 471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~K----------------- 532 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKK----------------- 532 (885)
T ss_pred HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhc-----------------
Confidence 2344667778888999999999999999999999999986 6678776544333333322111
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhh
Q 000156 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLG 599 (2015)
Q Consensus 520 ~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~ 599 (2015)
T Consensus 533 -------------------------------------------------------------------------------- 532 (885)
T KOG2023|consen 533 -------------------------------------------------------------------------------- 532 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHH-hcCCCCcccHHHHHHHHHHHHHHHHHHcC-CC
Q 000156 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATAT-KF 677 (2015)
Q Consensus 600 ~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L-~~~pg~~DsN~qV~~~~Le~l~~l~~~~~-~~ 677 (2015)
|-..=.+|+..|.+.+...=....+.++|+.-| .+--.++|+.--++ -.||++..++..++ .|
T Consensus 533 --------------NLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF 597 (885)
T KOG2023|consen 533 --------------NLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLF-PLLECLSSIASALGVGF 597 (885)
T ss_pred --------------ceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHH-HHHHHHHHHHHHHhccc
Confidence 001111122222222211000011233333222 11112344332222 24566666666543 22
Q ss_pred c---hhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC-
Q 000156 678 P---KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH- 753 (2015)
Q Consensus 678 ~---~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~- 753 (2015)
. ...+..|+ .|+.| ++..++....+.. ..+..-....-+|..++-+++..|...
T Consensus 598 ~P~~~~Vy~Rc~-~il~~------------t~q~~~~~~~~~~---------~~~pdkdfiI~sLDL~SGLaegLg~~ie 655 (885)
T KOG2023|consen 598 LPYAQPVYQRCF-RILQK------------TLQLLAKVQQDPT---------VEAPDKDFIIVSLDLLSGLAEGLGSHIE 655 (885)
T ss_pred cccCHHHHHHHH-HHHHH------------HHHHHHhccCCcc---------ccCCCcceEEEeHHHHhHHHHHhhhchH
Confidence 2 22222221 12211 2222222211110 011111223345666777777766532
Q ss_pred --CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCc
Q 000156 754 --LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (2015)
Q Consensus 754 --l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~ 831 (2015)
+.-..+.+.+..+ +.|.-|+||++|..++|.|-++.-+.+.++++++-|.+-..
T Consensus 656 ~Lva~snl~~lll~C-~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~N----------------------- 711 (885)
T KOG2023|consen 656 PLVAQSNLLDLLLQC-LQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGAN----------------------- 711 (885)
T ss_pred HHhhhccHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhc-----------------------
Confidence 1123477777775 99999999999999999998877666666666555543311
Q ss_pred cccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--ccchH
Q 000156 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNK 909 (2015)
Q Consensus 832 ~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL--~DsN~ 909 (2015)
+.++.+. +-..|.-.+++|........++.. +.++.-|...+ ...++
T Consensus 712 ----------------------l~~~~is--------v~nNA~WAiGeia~k~g~~~~~~v-~~vl~~L~~iin~~~~~~ 760 (885)
T KOG2023|consen 712 ----------------------LNPENIS--------VCNNAIWAIGEIALKMGLKMKQYV-SPVLEDLITIINRQNTPK 760 (885)
T ss_pred ----------------------CChhhch--------HHHHHHHHHHHHHHHhchhhhhHH-HHHHHHHHHHhcccCchH
Confidence 1111111 122344466766654333333332 45555555555 34567
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHh---cC
Q 000156 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAAVH--LDKMVPYVTTALT---DA 983 (2015)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~---~~ 983 (2015)
.+...+..+||.|+-..+..+.+|...++.+....+..=+ ..-.++|...+-.++...+ +-.-+..+..+.. ++
T Consensus 761 tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np 840 (885)
T KOG2023|consen 761 TLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNP 840 (885)
T ss_pred HHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccCh
Confidence 7888889999999998888899999999988766554321 1245677777766665543 2222334444443 22
Q ss_pred CCChhHHHHHHHHHHH
Q 000156 984 KLGAEGRKDLFDWLSK 999 (2015)
Q Consensus 984 k~~p~~R~~~l~~L~~ 999 (2015)
....|.+..+.|..
T Consensus 841 --~~~l~~~f~kiL~g 854 (885)
T KOG2023|consen 841 --EDDLRDEFYKILQG 854 (885)
T ss_pred --HHHHHHHHHHHHHH
Confidence 23456665555543
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-13 Score=158.13 Aligned_cols=387 Identities=17% Similarity=0.183 Sum_probs=268.3
Q ss_pred HHHHHHHHHHhhhcch---hhhHHHHHHHHHHHhhhChhHHHHHHHHHhhh---CCChhHHHHHHHHHHHHHHHhCCCC-
Q 000156 681 CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSH- 753 (2015)
Q Consensus 681 ~~~~il~~LveKlgD~---K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~---~KnpKv~~~~l~~L~~li~~fG~~~- 753 (2015)
|...-+..++.|-|-. .++......+..+..++.+.+... +++.+.+ .-.||-|...+++++...+++...+
T Consensus 60 w~~l~l~k~~~k~g~~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~ 138 (516)
T KOG2956|consen 60 WLKLALGKLFAKKGAEALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGT 138 (516)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCC
Confidence 3333444455544431 234555556677778888777666 6666533 3479999999999999998875432
Q ss_pred -CChhhHHHHHHhcCCC---CC--chhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCC-CCCc-
Q 000156 754 -LKLKDLIDFCKDTGLQ---SS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT-VVPK- 825 (2015)
Q Consensus 754 -l~~k~li~~l~~~gL~---~s--n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~-p~p~- 825 (2015)
.+.+..-.-..++ +. +. ...+-......++.++...-.+|...++.+.|.......+..+.+..+.. |.|.
T Consensus 139 s~~t~~~~~s~rkm-~~~~~d~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a 217 (516)
T KOG2956|consen 139 SPNTKETKAAIRKM-FPWMFDPRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSA 217 (516)
T ss_pred CCCCCcchhhhhhc-cccccCchhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchh
Confidence 2333222222222 22 11 12344555666777776677789888899999888888777766543221 1111
Q ss_pred -c--cc-cCcccc-----C--------CC---------CCC--------------CCCCCCCccc-ccccchHHHHhcCC
Q 000156 826 -K--TV-RASEST-----S--------SV---------SSG--------------GSDGLPREDI-SGKFTPTLVKSLES 864 (2015)
Q Consensus 826 -R--~~-r~~~~~-----~--------s~---------~~~--------------~~d~lprvdI-s~~L~~~ll~~l~d 864 (2015)
+ +. +.+... + +. +.+ ..|.+++..+ ...+..+++.++++
T Consensus 218 ~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v~~~l~~~~g 297 (516)
T KOG2956|consen 218 EKERFDSSNNKPSLPLSPPEEEKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQSALVADLLKEISG 297 (516)
T ss_pred hhcccccccccccccCCChhhcccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcchhHHHHHHHHhccC
Confidence 1 00 000000 0 00 000 0111222111 11233466777766
Q ss_pred C-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHH
Q 000156 865 P-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (2015)
Q Consensus 865 ~-~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~D-sN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll 942 (2015)
. .-..|++|+.+|..++.+....+|...|++|+..+...|.| .+......|+++|+.++++-...|..+.+..+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 6 78899999999999998766778888899999999999999 788999999999999999999999999999999999
Q ss_pred HHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC---CChhhhHHHHH
Q 000156 943 KCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPAS 1018 (2015)
Q Consensus 943 ~~L~D~k~-~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl~ 1018 (2015)
++-+|+.. .+|.|+..|+..+..+.++..+.. +...+.+.. -..-.-+++++.+.++.+... .-+.++++.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~-i~~~Ilt~D--~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN-ISPLILTAD--EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhHHHH-HhhHHhcCc--chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 99999765 677777777888878877665543 444444331 122356788999999887652 23456677799
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccC
Q 000156 1019 IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (2015)
Q Consensus 1019 ~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~ 1072 (2015)
++++..++.|||.|..||.+++..+|.+.|.+++..|..++++.|+-|++++..
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s 508 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASS 508 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998754
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-07 Score=132.20 Aligned_cols=773 Identities=14% Similarity=0.128 Sum_probs=456.3
Q ss_pred hhhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhhhhH---HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh-
Q 000156 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYA---KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV- 126 (2015)
Q Consensus 52 ~~~~~~~k~v~D-sN~~vqe~~leal~~~l~~~~~~~~~~~---~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~~- 126 (2015)
....++.++-.- +++..++.++..|..|.+....+ .+.. ...+|.||.-.-++...+|..|..++..+...+..
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk 92 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLR 92 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 344566666544 46899999999999998886442 2222 34788888763346788888888777777655331
Q ss_pred -----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHh-----CCCCcChhHHHhhhhhhhcCCC---hhHHHHHHHHHH
Q 000156 127 -----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEF-----GAKIIPPKRILKMLPELFDHQD---QNVRASSKGLTL 193 (2015)
Q Consensus 127 -----~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~f-----G~~~i~~k~il~~l~~ll~~~d---~~VR~~a~~l~~ 193 (2015)
...++.|+..+.+-++..+..|..+|..+.... +.+++--.-.+|.|..++.+.+ +.|++.+...+.
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~ 172 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR 172 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 345566667777778888888888888765421 2121111335777777777764 233333322222
Q ss_pred HHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCC
Q 000156 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEY 273 (2015)
Q Consensus 194 ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~ 273 (2015)
.|..+-+. ....+. + .| .
T Consensus 173 nLs~~~en--~~~~II------------------------------------------e-aG-------------a---- 190 (2102)
T PLN03200 173 NLCGSTDG--FWSATL------------------------------------------E-AG-------------G---- 190 (2102)
T ss_pred HHhcCccc--hHHHHH------------------------------------------H-cC-------------C----
Confidence 22211110 000000 0 00 0
Q ss_pred CCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCCCCC--CChHHHHHHHHHHhc-ccCHHHHHHHHHHH
Q 000156 274 ELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAI 349 (2015)
Q Consensus 274 dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~--~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l 349 (2015)
+ +.+.+.+.+.+=..+.+|...|..++. .+.... -+ ...++.|.+.+. +.+..+...|+.+|
T Consensus 191 -----------V--p~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 191 -----------V--DILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred -----------H--HHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 0 134444555555666777776666552 221100 01 123567777776 56778999999999
Q ss_pred HHHHHHhhhcchhh--hHhHHHHHHHHhccC---------cHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC-Ch
Q 000156 350 GNLARGLRTHFSGS--SRFLLPVLLEKLKEK---------KPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VP 417 (2015)
Q Consensus 350 ~~La~~L~~~f~~~--~~~llp~LL~klkdk---------k~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~K-np 417 (2015)
..|+.+- .++... -...+|.|++.+... +...++.+.-||..++.. ...+++.+...+.+. ..
T Consensus 257 ~nLAs~s-~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg----~~~ll~~L~~ll~s~rd~ 331 (2102)
T PLN03200 257 EALSSQS-KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG----MSALILYLGELSESPRSP 331 (2102)
T ss_pred HHHhcCC-HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC----chhhHHHHHHhhcccchH
Confidence 9999741 222222 124577777777532 355678888888888653 356777776666542 34
Q ss_pred HHHHHHHHHHHHHHHhcChh-HHHHhh--hhHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHhCchHHHHHHHhccHHHH
Q 000156 418 LVRSLTLNWVTFCIETSSKA-AVLKVH--KDYVPICMECLNDGTPE-VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (2015)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~-~l~~~l--~~l~p~l~k~L~Ds~~~-VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~ 493 (2015)
.+-..++..+..++...... .....+ ..+++.|++++.+.++. |.+.+.++|. ..+|+..+...+..-|. .
T Consensus 332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa---sl~gN~~l~~~L~~~da--i 406 (2102)
T PLN03200 332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA---SLYGNAYLSRKLNHAEA--K 406 (2102)
T ss_pred HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH---HhcCChHHHHHHHhccc--h
Confidence 44445555555554433221 111112 24678999999988777 4767776664 44566544444433221 1
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000156 494 NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQE 573 (2015)
Q Consensus 494 kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~ 573 (2015)
+-+-..+...+ ..+.......+
T Consensus 407 k~LV~LL~~~~---------------------------~evQ~~Av~aL------------------------------- 428 (2102)
T PLN03200 407 KVLVGLITMAT---------------------------ADVQEELIRAL------------------------------- 428 (2102)
T ss_pred hhhhhhhccCC---------------------------HHHHHHHHHHH-------------------------------
Confidence 11111111100 00000000000
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccc------hHHHHHHHHHh
Q 000156 574 TSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVC 647 (2015)
Q Consensus 574 ~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~Lv~~L~ 647 (2015)
+... .-+.+........-.-+-++..|.+.+-..|..|+..|..+..+.++.. .....|+++|
T Consensus 429 -~~L~---------~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL- 497 (2102)
T PLN03200 429 -SSLC---------CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLL- 497 (2102)
T ss_pred -HHHh---------CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-
Confidence 0000 0011222222333344788899999999999999999887765422210 1134455555
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHH--HHHHHHHHhhhc--chhhhHHHHHHHHHHHhhhChhHHHHHHH
Q 000156 648 MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERLY 723 (2015)
Q Consensus 648 ~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlg--D~K~r~~a~~~L~~l~e~~~~~~Vl~~L~ 723 (2015)
...+..+++.+.-++..+... ..-.+..+ ..+++.|++-+. +.+.+..|..+|..+...... .++..++
T Consensus 498 -----~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-~~I~~Lv 570 (2102)
T PLN03200 498 -----ETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-ATISQLT 570 (2102)
T ss_pred -----cCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-hHHHHHH
Confidence 334567888888888777642 11112233 236777777664 467888898899888765444 3556677
Q ss_pred HHhhhCCChhHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhh
Q 000156 724 KIMKDHKNPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2015)
Q Consensus 724 ~~l~~~KnpKv~~~~l~~L~~li~~fG~~~-----l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2015)
.. +.+.+++++..++..+..++..-.... .....-++.+..+ +.+.++.+++.|..++..++....+
T Consensus 571 ~L-Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~~d------ 642 (2102)
T PLN03200 571 AL-LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSRQD------ 642 (2102)
T ss_pred HH-hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCChH------
Confidence 65 478889999999998888765221110 1112356777777 8999999999999998877642211
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHH
Q 000156 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878 (2015)
Q Consensus 799 ~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~ 878 (2015)
+...+-. ....+-++..+.+.+-++|+++...|.
T Consensus 643 ------~~~avv~----------------------------------------agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 643 ------LCESLAT----------------------------------------DEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred ------HHHHHHH----------------------------------------cCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 0000000 002234777788888999999999999
Q ss_pred HHHHhcccc-CCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHH
Q 000156 879 KILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957 (2015)
Q Consensus 879 ~ll~~a~~~-I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~ 957 (2015)
.+....+.. ...-.-...++.|.+.|++.+..++..|+.++..|+..-...-+-.....+++++..|.+....+|+.|.
T Consensus 677 nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa 756 (2102)
T PLN03200 677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAA 756 (2102)
T ss_pred HHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHH
Confidence 988522100 0000013467889999999999999999999999986543222112345689999999999999999999
Q ss_pred HHHHHHHHhcCchhhH----------HHHHHHHhcCCC-ChhH--HHHHHHHHHHHhccCCC-CC------ChhhhHHHH
Q 000156 958 TVLDAWLAAVHLDKMV----------PYVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPA 1017 (2015)
Q Consensus 958 ~aL~~i~~~~gl~~ll----------~~l~~~L~~~k~-~p~~--R~~~l~~L~~~l~~~~~-~~------~~~~ll~pl 1017 (2015)
.+|..++.+.+.+.++ ..+.+.|...+. +... -.+++.|+++.=..... .+ +...-+.||
T Consensus 757 ~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l 836 (2102)
T PLN03200 757 RALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPL 836 (2102)
T ss_pred HHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHH
Confidence 9999999888766533 335566663321 1221 34566666652111111 11 234557889
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHH
Q 000156 1018 SIAMTDKSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 1018 ~~~L~D~~~~VR~aA~~~L~~l~~ 1041 (2015)
+.||.+.++.|-..|.+.|..+.+
T Consensus 837 ~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 837 VRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHHcCChHHHHHHHHHHHHHhc
Confidence 999999999999999998887763
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-11 Score=151.64 Aligned_cols=350 Identities=18% Similarity=0.185 Sum_probs=252.0
Q ss_pred CchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHH---
Q 000156 46 KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWV--- 121 (2015)
Q Consensus 46 ~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~~~~v~~~LieK~l~-~k~~~k~~a~~~ll~~~--- 121 (2015)
.||..-.+...+-.-+.-.-..+|.....|+-.++-......+.+ +-.++.++++ .+...+..+.-.+--++
T Consensus 90 ~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~----~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~ 165 (569)
T KOG1242|consen 90 VDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY----VLELLLELLTSTKIAERAGAAYGLAGLVNGL 165 (569)
T ss_pred cCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH----HHHHHHHHhccccHHHHhhhhHHHHHHHcCc
Confidence 344333333333344555667888888888877765543322222 3334445566 35455544433333333
Q ss_pred --hhhhhhhHHHHHHHHhhcCChhhHH-HHHHHHHHHHHHhCCCCcC-hhHHHhhhhhhhcCCChhHHHHHHHHHHHHHH
Q 000156 122 --ELEAVDVFLDVMEKAIKNKVAKAVV-PAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCR 197 (2015)
Q Consensus 122 --E~~~~~~v~~~L~~~~~~KnpKv~~-~~l~~L~~~l~~fG~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~ 197 (2015)
|......+++.|.++..+|++.... +++.+.......-|...-| +-+++|.+...|++..+.||.+|...+..+.+
T Consensus 166 ~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 166 GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 2234567888998988888776555 4666666666667754333 46788888899999999999998877666665
Q ss_pred HhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000156 198 WIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVD 277 (2015)
Q Consensus 198 ~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~ 277 (2015)
.+.+-.++..
T Consensus 246 ~~~~~aVK~l---------------------------------------------------------------------- 255 (569)
T KOG1242|consen 246 CLSAYAVKLL---------------------------------------------------------------------- 255 (569)
T ss_pred hcCcchhhHh----------------------------------------------------------------------
Confidence 5543222111
Q ss_pred cccccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh
Q 000156 278 PVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL 356 (2015)
Q Consensus 278 ~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L 356 (2015)
+| .....+.+.+|+.+..+++.|..++. .|+.......++++.|.+++.|+.+.|+..+..|+..++...
T Consensus 256 -------lp--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 256 -------LP--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred -------hh--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 11 12222333499999999999998884 666666667899999999999999999999999999999888
Q ss_pred hhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000156 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (2015)
Q Consensus 357 ~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~ 434 (2015)
++ +-...++|.|++.+.+.+..+.++......+=|-+ ...+++-++|.+..++..++..+|..++..+..+..-+
T Consensus 327 dN---~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 327 DN---PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred cc---HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 76 45888999999999999977775554444332212 23567788999999999999999999999998877776
Q ss_pred -ChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHH
Q 000156 435 -SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (2015)
Q Consensus 435 -~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~ 481 (2015)
++..+.++++.++|.+...+.|+.|+||..|.++|+.+.+.+|+..+
T Consensus 404 eDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 404 EDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred cCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 66778899999999999999999999999999999999999998754
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-10 Score=139.43 Aligned_cols=581 Identities=18% Similarity=0.187 Sum_probs=333.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC
Q 000156 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (2015)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~K 415 (2015)
|.....+...-.+|..|++..|=. .++..+=--+..+..-||+-...|...++.+ .+++.++|.|.+.+++|
T Consensus 452 ded~yar~egreIisnLakaaGla------~mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLA------TMISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhH------HHHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 445555666666777666643311 1222222233456677888888888888876 78899999999888875
Q ss_pred -ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC---chHHHHHHHhccHH
Q 000156 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEKLDDV 491 (2015)
Q Consensus 416 -np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G---e~~~~~~l~~Ld~~ 491 (2015)
+|+.|.-+..+...+..-.+-+ ..++++.++.++-++|.|....||.-++-++.++.+..+ -+.|+..+.-|-..
T Consensus 524 kSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 8999998887776654433333 347789999999999999999999999999999998865 34455444443221
Q ss_pred HHH----HHHHHHhcCCCCCCCCCCCccccCCCCCCCCCC-CCcc-c-ccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 000156 492 RRN----KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE-ASES-S-FVRKSAASMLSGKRPVSAAPASKKGGPVKPSA 564 (2015)
Q Consensus 492 ~~k----kI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~-~-~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~ 564 (2015)
.+. -+-..++..|-.-+-.-+. .+.- ..+- - ..+.+ .+ |-- ..|.-.-+
T Consensus 603 ir~hrgk~laafLkAigyliplmd~e----------ya~yyTrevmlil~rEf-~s------PDe----emkkivLK--- 658 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMDAE----------YASYYTREVMLILIREF-GS------PDE----EMKKIVLK--- 658 (1172)
T ss_pred HHHccChHHHHHHHHHhhccccccHH----------HHHHhHHHHHHHHHHhh-CC------ChH----HHHHHHHH---
Confidence 111 0111111111000000000 0000 0000 0 00000 00 000 00000000
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHH---hhccCcHHHHhhhccCCHHHHHHHHHHHHHHH----Hhccccch
Q 000156 565 KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR---LGSLIPADTVGQLKSAVWKERLEAISSLRQQV----EAVQNLDQ 637 (2015)
Q Consensus 565 ~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~---~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v----~~~~~~~~ 637 (2015)
-.++|++. -..++-.+++-.++.+-|..|.++-......+ ........
T Consensus 659 -------------------------Vv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG 713 (1172)
T KOG0213|consen 659 -------------------------VVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVG 713 (1172)
T ss_pred -------------------------HHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhC
Confidence 00000000 01234456777788888998888732222221 11111111
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--CCchhHHHHHHHHHHhhhcchhhhH-HHHHHHHHHHhhhC
Q 000156 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRA-HAMKCLTTFSEAVG 714 (2015)
Q Consensus 638 ~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~--~~~~~~~~~il~~LveKlgD~K~r~-~a~~~L~~l~e~~~ 714 (2015)
+.+.+-|.+. .++|.+.|-.....+.+..++.+.+ +|..+....++.+++--+....+-+ ....++..++..++
T Consensus 714 ~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 714 SDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALG 790 (1172)
T ss_pred chHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 2334445443 3788888888888888888888765 4556666667777766555432211 12234444444443
Q ss_pred h------hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 000156 715 P------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (2015)
Q Consensus 715 ~------~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~ 788 (2015)
. ..++..++..+ .+|+|+||..++..++.+..-....+ -..++.. |=+.||.
T Consensus 791 ~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc~--ee~~m~~-------------------lGvvLyE 848 (1172)
T KOG0213|consen 791 GRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTCG--EEKLMGH-------------------LGVVLYE 848 (1172)
T ss_pred hccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhcc--HHHHHHH-------------------hhHHHHH
Confidence 2 22444444453 79999999999988877654221100 0011111 1123444
Q ss_pred HhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCC-cccccccchHHHHhcCCCCh
Q 000156 789 FVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR-EDISGKFTPTLVKSLESPDW 867 (2015)
Q Consensus 789 ~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr-vdIs~~L~~~ll~~l~d~~W 867 (2015)
++|..-..-| +.++..|.....-+.-. ...|+ .||...|+| -+.++.-
T Consensus 849 ylgeeypEvL----gsILgAikaI~nvigm~-----------------------km~pPi~dllPrltP----ILknrhe 897 (1172)
T KOG0213|consen 849 YLGEEYPEVL----GSILGAIKAIVNVIGMT-----------------------KMTPPIKDLLPRLTP----ILKNRHE 897 (1172)
T ss_pred hcCcccHHHH----HHHHHHHHHHHHhcccc-----------------------ccCCChhhhcccchH----hhhhhHH
Confidence 4443321111 12222332222211100 01111 133333444 3456677
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCC
Q 000156 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947 (2015)
Q Consensus 868 k~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D 947 (2015)
|+-..+++.+..|+..+..++....+--+.--|...|+--|+.++..|.+.+|.|+++.|+. .++-.+++.|+.
T Consensus 898 KVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------dVLatLlnnLkv 971 (1172)
T KOG0213|consen 898 KVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------DVLATLLNNLKV 971 (1172)
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------HHHHHHHhcchH
Confidence 88889999999998755344443323334445566677789999999999999999999976 678899999999
Q ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC-CCChhhhHHH-HHhhcCCCC
Q 000156 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKP-ASIAMTDKS 1025 (2015)
Q Consensus 948 ~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~~~~~~ll~p-l~~~L~D~~ 1025 (2015)
+.-..|....-++.-+++.||+=.++|.|..-...+ +..+..++|.-|.-.|+-++. +.+..-.+.| |-.+|.|++
T Consensus 972 qeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP--e~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD 1049 (1172)
T KOG0213|consen 972 QERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP--EANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRD 1049 (1172)
T ss_pred HHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc--hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcccc
Confidence 888888888889999999999989999888777665 345667777666655554433 2344444555 667999999
Q ss_pred hHHHHHHHHHHHH
Q 000156 1026 SDVRKAAEACIVE 1038 (2015)
Q Consensus 1026 ~~VR~aA~~~L~~ 1038 (2015)
.--|..|..++..
T Consensus 1050 ~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 1050 LVHRQTAMNVIKH 1062 (1172)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988766543
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-10 Score=150.09 Aligned_cols=566 Identities=17% Similarity=0.190 Sum_probs=349.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHH
Q 000156 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (2015)
Q Consensus 403 ~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~ 481 (2015)
-+...+...+.+-||..|++.+-||-..++.+++ ....-.+++|..+++.+|.|.+.-+.|.|.+.|+.++..-+...=
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence 3445556677899999999999999999988763 233345688999999999999999999999999988887654321
Q ss_pred HHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCC
Q 000156 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561 (2015)
Q Consensus 482 ~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k 561 (2015)
..+.+.| . +...+|.. .+ ..+. .+ ..-++.+.+ |+.|
T Consensus 898 ~~LV~sL----~---~tl~~Gkr-----~~--~~vs--------~e------TelFq~G~L-g~Tp-------------- 934 (1702)
T KOG0915|consen 898 KSLVDSL----V---NTLTGGKR-----KA--IKVS--------EE------TELFQEGTL-GKTP-------------- 934 (1702)
T ss_pred HHHHHHH----H---HHHhcccc-----cc--ceec--------cc------hhcccCCcC-CCCC--------------
Confidence 1111111 1 11111110 00 0000 00 000111110 1111
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhh---c--cCCHHHHHHHHHHHHHHHHh-cccc
Q 000156 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQL---K--SAVWKERLEAISSLRQQVEA-VQNL 635 (2015)
Q Consensus 562 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L---~--s~~Wk~Rl~a~e~L~~~v~~-~~~~ 635 (2015)
+|+ .--+.-|+.+.++++-.|+++-++ . +..|.-|..|.-.|..+... ....
T Consensus 935 -----~Gg-----------------~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl 992 (1702)
T KOG0915|consen 935 -----DGG-----------------KISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKL 992 (1702)
T ss_pred -----CCC-----------------cchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhh
Confidence 110 012678999999999999997644 3 45699999999999998876 3334
Q ss_pred chHH-HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhh
Q 000156 636 DQSV-EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEA 712 (2015)
Q Consensus 636 ~~~~-~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~--K~r~~a~~~L~~l~e~ 712 (2015)
.++. +.+.|++.. --|.+..|++.+-++|..++...+.....++..++..|+..+++. ++|+.+.-+|..+..-
T Consensus 993 ~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 993 EPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred hhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 4443 344444432 268999999999999999998655666778899999999999996 7899988888877665
Q ss_pred hChhHH-------HHHHHHHhhhCC-Chh-HHHHHHHHHHHHHHHhCCC--CCC----hhhHHHHHHhcCCCCCchhHHH
Q 000156 713 VGPGFI-------FERLYKIMKDHK-NPK-VLSEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAAATRN 777 (2015)
Q Consensus 713 ~~~~~V-------l~~L~~~l~~~K-npK-v~~~~l~~L~~li~~fG~~--~l~----~k~li~~l~~~gL~~sn~~VR~ 777 (2015)
-+.+.+ +..+++.+-+.| +.| +-..++..|++++-..+-. +.. +..+++++..-|.-++-++||.
T Consensus 1070 ~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~ 1149 (1702)
T KOG0915|consen 1070 RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRR 1149 (1702)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHH
Confidence 444433 444444432222 122 1234566677766554422 111 2346777755466688899999
Q ss_pred HHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHH-hcCCCCCC------CCCcccccCccccCCC-CCCCCCCCCCcc
Q 000156 778 ATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY-EKNPFEGT------VVPKKTVRASESTSSV-SSGGSDGLPRED 849 (2015)
Q Consensus 778 aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef-~k~~~~~~------p~p~R~~r~~~~~~s~-~~~~~d~lprvd 849 (2015)
.++.++..|.++.|..+++|+.+|.|.++..+..-= ..+.+-.. .......|.+.++++. -...++.++-.|
T Consensus 1150 ~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD 1229 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID 1229 (1702)
T ss_pred HHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh
Confidence 999999999999999999999999998876653210 00000000 0000011221111100 000123344444
Q ss_pred c--ccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHh
Q 000156 850 I--SGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM 926 (2015)
Q Consensus 850 I--s~~L~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~al 926 (2015)
+ ..++.|.+.+.+... .--.|..+..-+.-+.......++|.. |.++.+|...+.|.|..++..-...++.|++.-
T Consensus 1230 ~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1230 ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 4 345666666555433 445566666666666666667888886 999999999999999999999999999999988
Q ss_pred Ch-hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc
Q 000156 927 GP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (2015)
Q Consensus 927 g~-~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~--gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~ 1003 (2015)
.+ .+.++++.++..++....+.++.....+..-.+...+.+ ..+.++|.+.=+.... ....+++++-+- .+.
T Consensus 1309 s~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee---~Ka~q~Lw~dvW--~e~ 1383 (1702)
T KOG0915|consen 1309 SPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE---EKANQELWNDVW--AEL 1383 (1702)
T ss_pred ChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH---HHHHHHHHHHHH--HHh
Confidence 77 578888888888887777766433333333222222222 2467888655444321 111233332221 111
Q ss_pred CCCCC-----ChhhhHHH-HHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1004 LSGFP-----DAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1004 ~~~~~-----~~~~ll~p-l~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
.+... -...++.+ +...+++..+.+|+.+..++..+...
T Consensus 1384 vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1384 VSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred CCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence 22211 12334444 44567888899999998888766533
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-10 Score=139.64 Aligned_cols=587 Identities=15% Similarity=0.153 Sum_probs=359.3
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhcchh--hhHhHHHHHHH
Q 000156 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSG--SSRFLLPVLLE 373 (2015)
Q Consensus 300 keR~eaL~~L~~l~~--~~ki~~~~y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~--~~~~llp~LL~ 373 (2015)
--|...++.|.-+.. .|......+.+++-++..... +++..|+..|.+||-.--.-.+..|.. ....++..+.+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 466778888887774 233222345556555555443 778888888888776655545566753 35568888889
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh-cC------------
Q 000156 374 KLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET-SS------------ 435 (2015)
Q Consensus 374 klkdkk~~V~~aa~~aL~al~~~~~~~l-----~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~-~~------------ 435 (2015)
........|+.++..||..++.-+...+ +.++..-+.++++.|..|..++.+|-..+.+. .+
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999885411122 23555556788999999999999988854432 11
Q ss_pred --hh--HHH-HhhhhHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcC
Q 000156 436 --KA--AVL-KVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2015)
Q Consensus 436 --~~--~l~-~~l~~l~p~l~k~L~-------Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (2015)
+. .+. ..++.++|.|.+.|. |-+=.+-.||-.||..+..++|+..+.+.
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~V------------------- 365 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHV------------------- 365 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhh-------------------
Confidence 10 111 234566777776662 11123556666677777777665432211
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCC
Q 000156 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (2015)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~ 583 (2015)
T Consensus 366 -------------------------------------------------------------------------------- 365 (859)
T KOG1241|consen 366 -------------------------------------------------------------------------------- 365 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccc--hHH-HHHHHHHhcCCCCcccHHHHH
Q 000156 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--QSV-EILVRLVCMLPGWSEKNVQVQ 660 (2015)
Q Consensus 584 ~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~--~~~-~~Lv~~L~~~pg~~DsN~qV~ 660 (2015)
-+=+.+.+.+.+|+.|.+|+..+++++.+..+.. ... +.+..++. ...|++..|
T Consensus 366 -------------------l~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~---lm~D~sl~V- 422 (859)
T KOG1241|consen 366 -------------------LPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN---LMSDPSLWV- 422 (859)
T ss_pred -------------------HHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH---HhcCchhhh-
Confidence 1223356788899999999999999988754321 110 11111110 012333222
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHH
Q 000156 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGIL 740 (2015)
Q Consensus 661 ~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~ 740 (2015)
+++..+.+..+++-+.+... -..-+..+++.++.++ +..|+|...++.
T Consensus 423 ------------------kdTaAwtlgrI~d~l~e~~~------------n~~~l~~~l~~l~~gL--~DePrva~N~CW 470 (859)
T KOG1241|consen 423 ------------------KDTAAWTLGRIADFLPEAII------------NQELLQSKLSALLEGL--NDEPRVASNVCW 470 (859)
T ss_pred ------------------cchHHHHHHHHHhhchhhcc------------cHhhhhHHHHHHHHHh--hhCchHHHHHHH
Confidence 23444555555544332110 0011233455555554 578999999988
Q ss_pred HHHHHHHHh---CCCC----CCh---hhHHHHHHhc-CCCC-CchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHH
Q 000156 741 WMVSAVEDF---GVSH----LKL---KDLIDFCKDT-GLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSA 808 (2015)
Q Consensus 741 ~L~~li~~f---G~~~----l~~---k~li~~l~~~-gL~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~ 808 (2015)
.+..+.+.. +... ... ..++.-+.+. ...+ ...+.|.+|.+.|++|-++...+..+.+.++-+.+++.
T Consensus 471 Af~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~k 550 (859)
T KOG1241|consen 471 AFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEK 550 (859)
T ss_pred HHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 887777533 2221 111 2333333321 0112 23579999999999999999988877777777777777
Q ss_pred HHHHHhcCCCCCCCCCccc-ccCcccc-----CC---CCCCCCCCCCCcccccccchHHHHhcCCC-ChHHHHHHHHHHH
Q 000156 809 LDAEYEKNPFEGTVVPKKT-VRASEST-----SS---VSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVN 878 (2015)
Q Consensus 809 Le~ef~k~~~~~~p~p~R~-~r~~~~~-----~s---~~~~~~d~lprvdIs~~L~~~ll~~l~d~-~Wk~R~eale~L~ 878 (2015)
|+.-++..... -..|. ...=++. ++ ..+ . .+-.+++.|-.-|++.++.+ +--+-.+|+-++.
T Consensus 551 l~q~i~~~~l~---~~dr~q~~eLQs~Lc~~Lq~i~rk~~--~---~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~ 622 (859)
T KOG1241|consen 551 LDQTISSQILS---LADRAQLNELQSLLCNTLQSIIRKVG--S---DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVS 622 (859)
T ss_pred HHHHHHHHhcc---HhhHHHHHHHHHHHHHHHHHHHHHcc--c---cchhHHHHHHHHHHHHHcCCccccchHHHHHHHH
Confidence 77666511000 00000 0000000 00 000 0 11234555666788888773 4456778888888
Q ss_pred HHHHhccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcH--HHHHH
Q 000156 879 KILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK--HMREC 955 (2015)
Q Consensus 879 ~ll~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~--~Vr~a 955 (2015)
.+++..++.+.... ..+.+.|..-| +-....|...|..+++.|+.+|+.+|.+|+..++..++++|+.... .|.-+
T Consensus 623 tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~ 701 (859)
T KOG1241|consen 623 TLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPA 701 (859)
T ss_pred HHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccch
Confidence 88875444443332 45555665556 4456789999999999999999999999999999999999998754 58888
Q ss_pred HHHHHHHHHHhcC--chhhHHHHHHHHhcCC-------------CChhHHHHHHHHHHHHhccCCCC---CChhhhHHHH
Q 000156 956 TLTVLDAWLAAVH--LDKMVPYVTTALTDAK-------------LGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPA 1017 (2015)
Q Consensus 956 a~~aL~~i~~~~g--l~~ll~~l~~~L~~~k-------------~~p~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl 1017 (2015)
...|.+.++-.+| .++.+..+...|+... +.-.+|..+++.-.-.+..+... ..+...+++|
T Consensus 702 IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I 781 (859)
T KOG1241|consen 702 ILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHI 781 (859)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHH
Confidence 9999999999987 4666676666665211 01357888887776666666532 2233444555
Q ss_pred Hhhc-----CCCC-hHHHHHHHHHHHHHHHHcChhHHH
Q 000156 1018 SIAM-----TDKS-SDVRKAAEACIVEILRAGGQETIE 1049 (2015)
Q Consensus 1018 ~~~L-----~D~~-~~VR~aA~~~L~~l~~~~G~~~~~ 1049 (2015)
++.+ ++.+ ..+-.+|.-.++-+...+|.+...
T Consensus 782 ~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 782 ISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 5432 3333 556677778888899999976544
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-07 Score=129.76 Aligned_cols=807 Identities=16% Similarity=0.148 Sum_probs=464.6
Q ss_pred hhhhhhhccC--ChHHHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhcc
Q 000156 288 SGFWEGVKAT--KWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHF 360 (2015)
Q Consensus 288 ~~f~~~l~s~--kWkeR~eaL~~L~~l~~~~k---i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f 360 (2015)
..+.+++.+. +-++|+.++.+|+.+++... ..-.+....++.|...|...+..+...|+.++..|+.. .+...
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~I 95 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKV 95 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3677788765 77999999999999985321 11011233566677777655677788888888888753 22211
Q ss_pred hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCC-------hHhHHHHHHHHhhcCCh---HHHHHHHHHHHH
Q 000156 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLN-------LVDVVEDVKTSVKNKVP---LVRSLTLNWVTF 429 (2015)
Q Consensus 361 ~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~-~~~-------l~~il~~l~~~L~~Knp---~vR~~~l~~L~~ 429 (2015)
.....+|+|++.+++.....++.+..+|..+..++ +.. -...+|.+...+++.+. -++..++..|..
T Consensus 96 --v~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~n 173 (2102)
T PLN03200 96 --LLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRN 173 (2102)
T ss_pred --HHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 13678999999999999999999999999987641 010 13457888888886542 244444555555
Q ss_pred HHHhcChhHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCC
Q 000156 430 CIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVA 508 (2015)
Q Consensus 430 ~l~~~~~~~l~~~l-~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~ 508 (2015)
+.... .......+ .-.+|.++.+|.+.++.++..|..++..++...++. . ..|.+ . |.
T Consensus 174 Ls~~~-en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~-~------------~aVIe---a-Ga--- 232 (2102)
T PLN03200 174 LCGST-DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESS-I------------SKVLD---A-GA--- 232 (2102)
T ss_pred HhcCc-cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHH-H------------HHHHH---C-CC---
Confidence 43322 21111112 237899999999999999998888776664433321 1 11111 0 00
Q ss_pred CCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 000156 509 TGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSE 588 (2015)
Q Consensus 509 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~ 588 (2015)
T Consensus 233 -------------------------------------------------------------------------------- 232 (2102)
T PLN03200 233 -------------------------------------------------------------------------------- 232 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHhhccCcHHHHhhhcc-CCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHH
Q 000156 589 MSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667 (2015)
Q Consensus 589 ~s~ee~e~~~~~ll~~~l~~~L~s-~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l 667 (2015)
-+.+++.|.+ .+-..|.+|+-.|.++..+.. ...+.+++ ..++..|
T Consensus 233 --------------VP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~---e~r~~Iv~----------------aGgIp~L 279 (2102)
T PLN03200 233 --------------VKQLLKLLGQGNEVSVRAEAAGALEALSSQSK---EAKQAIAD----------------AGGIPAL 279 (2102)
T ss_pred --------------HHHHHHHHccCCChHHHHHHHHHHHHHhcCCH---HHHHHHHH----------------CCCHHHH
Confidence 0233444433 334556666666665543211 11111111 1111111
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHH
Q 000156 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (2015)
Q Consensus 668 ~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~ 747 (2015)
..++.. +. +.+ + ..-...-+++.|.-+|..+|.-. ..++..|...+.......+...++..|..++.
T Consensus 280 I~lL~s-p~--~e~----~----~~~~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 280 INATVA-PS--KEF----M----QGEFAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHhC-cc--hhh----h----ccccchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 111110 00 000 0 00001123455555666665432 23444444443223355566677778877776
Q ss_pred HhCCCC-----CChhhHHHHHHhcCCCCCchh-HHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCC
Q 000156 748 DFGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT 821 (2015)
Q Consensus 748 ~fG~~~-----l~~k~li~~l~~~gL~~sn~~-VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~ 821 (2015)
.+.... ++...+...+.++ +.+.++. |.+.+..+|..+| |.. .+.+.|... +
T Consensus 347 l~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~---gN~----------~l~~~L~~~-------d- 404 (2102)
T PLN03200 347 VFDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLY---GNA----------YLSRKLNHA-------E- 404 (2102)
T ss_pred hcCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhc---CCh----------HHHHHHHhc-------c-
Confidence 654321 1222344556667 7888766 4777777766554 221 111111110 0
Q ss_pred CCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHH
Q 000156 822 VVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (2015)
Q Consensus 822 p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~ 901 (2015)
..+-++..+...+-..+.+++..|..++...+..++.-.-...++.|.
T Consensus 405 --------------------------------aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV 452 (2102)
T PLN03200 405 --------------------------------AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLI 452 (2102)
T ss_pred --------------------------------chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHH
Confidence 012344555555567778888888777742111111000123478888
Q ss_pred hccccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-------CchhhH
Q 000156 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------HLDKMV 973 (2015)
Q Consensus 902 ~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~-~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~-------gl~~ll 973 (2015)
..|...+..++..|+.+++.|+..-...-... -...+|.+++.|...+..+++.|..+|..+..+- .-...+
T Consensus 453 ~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAI 532 (2102)
T PLN03200 453 SLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAV 532 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCH
Confidence 88888889999999999998875322111111 1357999999999999999999999999877422 112467
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000156 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (2015)
Q Consensus 974 ~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~ 1053 (2015)
|.+...|.+. ++..|..++.-|...+.. . ....+++++..|...++.+...+..+++.+......+.+....
T Consensus 533 ppLV~LL~sg--d~~~q~~Aa~AL~nLi~~-~----d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g- 604 (2102)
T PLN03200 533 PALLWLLKNG--GPKGQEIAAKTLTKLVRT-A----DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG- 604 (2102)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHhc-c----chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh-
Confidence 7788888866 467787777777655432 1 1345577778787778888888888887776655544322110
Q ss_pred cCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhhhhhcc
Q 000156 1054 DIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLN 1133 (2015)
Q Consensus 1054 ~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (2015)
.....-...+.+.++..
T Consensus 605 ~~~~ggL~~Lv~LL~sg--------------------------------------------------------------- 621 (2102)
T PLN03200 605 SAANDALRTLIQLLSSS--------------------------------------------------------------- 621 (2102)
T ss_pred hhccccHHHHHHHHcCC---------------------------------------------------------------
Confidence 00111222222222110
Q ss_pred cCCCChHHHh-hhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCcChhh----HHH-
Q 000156 1134 VKDSNKEDRE-RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD----IIE- 1207 (2015)
Q Consensus 1134 ~~~~~k~~R~-~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~----~i~- 1207 (2015)
.+..+. .-..+ +++-..+.++.+.+ ...-.=+-++..|.+.++..+.++.-.|...+.+.... ++.
T Consensus 622 ----s~~ikk~Aa~iL-snL~a~~~d~~~av---v~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~ 693 (2102)
T PLN03200 622 ----KEETQEKAASVL-ADIFSSRQDLCESL---ATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAE 693 (2102)
T ss_pred ----CHHHHHHHHHHH-HHHhcCChHHHHHH---HHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 000000 00000 11222334433322 11112234788888999988888877777766544322 222
Q ss_pred -HHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhc
Q 000156 1208 -VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNF 1286 (2015)
Q Consensus 1208 -~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~v 1286 (2015)
.+..++++ +.+.+..+...+++.|..++..-... .+.=..-.||.|+.-+.+..+.+|+..-..+-++|.-
T Consensus 694 GaV~pL~~L----L~~~d~~v~e~Al~ALanLl~~~e~~----~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 694 DAIKPLIKL----AKSSSIEVAEQAVCALANLLSDPEVA----AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred CCHHHHHHH----HhCCChHHHHHHHHHHHHHHcCchHH----HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 23444444 58889999999999988765432111 1111234689998888777788899999999999999
Q ss_pred cCccccH----------HHHHhhhcCCChhhH--HHHHHHHHHHHHh-hCCCcccc--------cchHHHHHHhhccCCh
Q 000156 1287 YSATKTL----------PYILEGLRSKNNRTR--IECVDLVGFLIDH-HGAEISGQ--------LKSLQIVASLTAERDG 1345 (2015)
Q Consensus 1287 y~~skvf----------~~l~~gl~sKN~r~R--~ecl~~l~~li~~-~g~~~~~~--------~k~l~~ia~~i~drd~ 1345 (2015)
+|...+| .-|++-|++-|.+.- .|.|+.|+.+... +|..-..| +-.|..+..++.+-++
T Consensus 766 ~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p 845 (2102)
T PLN03200 766 FPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHP 845 (2102)
T ss_pred CChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCCh
Confidence 9977644 334555677776554 4699999998873 34332111 2346788889999999
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHhhc---CCHHHHHhHHHHHHhh
Q 000156 1346 EIRKAALNTLATGYKILGEDIWRYVGK---LTDAQKSMLDDRFKWK 1388 (2015)
Q Consensus 1346 ~VR~AAl~~l~~~y~~~G~~v~~~vg~---Ls~~~~s~l~er~kr~ 1388 (2015)
.|-..|+..|. .+|+|+-. .+|+ =.++-.+.|-.|+=++
T Consensus 846 ~~~~kai~il~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 846 LVQDKAIEILS---RLCRDQPV-VLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred HHHHHHHHHHH---HHhccChh-HHHHHHhcccchHHHHHHHHhhc
Confidence 99999999998 45666521 2232 2455567777777654
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-08 Score=117.88 Aligned_cols=498 Identities=13% Similarity=0.115 Sum_probs=295.7
Q ss_pred HHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcch--hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH
Q 000156 329 TLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (2015)
Q Consensus 329 ~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~--~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il 405 (2015)
......+ ++...|+..|++||-.=..-.+..|. -...-++..+.+........++.++.-||..++.-+......++
T Consensus 181 iv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ym 260 (858)
T COG5215 181 IVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYM 260 (858)
T ss_pred HHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455 77788888889988875555566664 33557888888989889999999999999987743222333444
Q ss_pred HHH-----HHHhhcCChHHHHHHHHHHHHHHH-hcChhH--------------HH-HhhhhHHHHHHHHhcC----C---
Q 000156 406 EDV-----KTSVKNKVPLVRSLTLNWVTFCIE-TSSKAA--------------VL-KVHKDYVPICMECLND----G--- 457 (2015)
Q Consensus 406 ~~l-----~~~L~~Knp~vR~~~l~~L~~~l~-~~~~~~--------------l~-~~l~~l~p~l~k~L~D----s--- 457 (2015)
+.. ..++++.|-+|+.++.+|-..+.+ ...-.- |. ...++++|.+.++|.. .
T Consensus 261 E~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~D 340 (858)
T COG5215 261 ENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGD 340 (858)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 433 346678999999999998855443 221110 00 1235566777666622 1
Q ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccc
Q 000156 458 TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 537 (2015)
Q Consensus 458 ~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 537 (2015)
+=.+-.+|..||..|.+..|+..++|.+
T Consensus 341 dWn~smaA~sCLqlfaq~~gd~i~~pVl---------------------------------------------------- 368 (858)
T COG5215 341 DWNPSMAASSCLQLFAQLKGDKIMRPVL---------------------------------------------------- 368 (858)
T ss_pred ccchhhhHHHHHHHHHHHhhhHhHHHHH----------------------------------------------------
Confidence 1235566777777777776665443221
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHH
Q 000156 538 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 617 (2015)
Q Consensus 538 ~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~ 617 (2015)
+=+.+.+++.+|..
T Consensus 369 ------------------------------------------------------------------~FvEqni~~~~w~n 382 (858)
T COG5215 369 ------------------------------------------------------------------GFVEQNIRSESWAN 382 (858)
T ss_pred ------------------------------------------------------------------HHHHHhccCchhhh
Confidence 11235677789999
Q ss_pred HHHHHHHHHHHHHhcccc--chH-HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhc
Q 000156 618 RLEAISSLRQQVEAVQNL--DQS-VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (2015)
Q Consensus 618 Rl~a~e~L~~~v~~~~~~--~~~-~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg 694 (2015)
|.+|+..+++.+.+.... ... .+.+..++. ...|+-..|.. ...+|+..|-+.+.
T Consensus 383 reaavmAfGSvm~gp~~~~lT~~V~qalp~i~n---~m~D~~l~vk~-------------------ttAwc~g~iad~va 440 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN---EMSDSCLWVKS-------------------TTAWCFGAIADHVA 440 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH---hcccceeehhh-------------------HHHHHHHHHHHHHH
Confidence 999999999988774321 111 011111111 01233222222 23333333333322
Q ss_pred chhhhHHHHHHHHHHHhhhCh----hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-----hh---hHHHH
Q 000156 695 DIKTRAHAMKCLTTFSEAVGP----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-----LK---DLIDF 762 (2015)
Q Consensus 695 D~K~r~~a~~~L~~l~e~~~~----~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~-----~k---~li~~ 762 (2015)
+ .++| ..+.+..+-++ ..+|++...|....-.++..|....-. .+ .++.-
T Consensus 441 ~----------------~i~p~~Hl~~~vsa~liGl--~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~ 502 (858)
T COG5215 441 M----------------IISPCGHLVLEVSASLIGL--MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNA 502 (858)
T ss_pred H----------------hcCccccccHHHHHHHhhh--hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHH
Confidence 2 1111 12233333333 467899888888888888877643211 11 23332
Q ss_pred HHhc-CCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCC
Q 000156 763 CKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (2015)
Q Consensus 763 l~~~-gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~ 841 (2015)
+.+. .+..-+.+.|.++...|++|..+..+.+.+.+.++-.-.++.|+.-..-.... .. .
T Consensus 503 Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~--------l~-----------~ 563 (858)
T COG5215 503 LVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI--------LA-----------T 563 (858)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh--------hh-----------h
Confidence 2221 12233457899999999999999998888877777766676666543221100 00 0
Q ss_pred CCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccc-hHHHHHHHHHHHH
Q 000156 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLG 920 (2015)
Q Consensus 842 ~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~~l~ 920 (2015)
+|.. +..++.. .-+.-|..|+....+.|.+.. ..|+..|...|... ...+.......|+
T Consensus 564 eD~~--------~~~elqS-----------N~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIs 623 (858)
T COG5215 564 EDQL--------LVEELQS-----------NYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAIS 623 (858)
T ss_pred HHHH--------HHHHHHH-----------HHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHH
Confidence 0000 0111111 123346666765445566653 55888888888655 3445567788999
Q ss_pred HHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000156 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2015)
Q Consensus 921 ~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2015)
.|+..+|+.|++|+..|+|-+.+.|+.....|...|..-+..++..+|-+- .+ ..+.+ ..-|.+.
T Consensus 624 al~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df-~~-y~d~~-------------ms~LvQ~ 688 (858)
T COG5215 624 ALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF-NI-YADVL-------------MSSLVQC 688 (858)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH-HH-HHHHH-------------HHHHHHH
Confidence 999999999999999999999999999999999999998888888876221 11 11111 1112222
Q ss_pred hccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1001 LTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1001 l~~~~~~~~~~~ll~p-l~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
+.. +....-++| +++|+.|-...+-.+.+..|..+|..
T Consensus 689 lss----~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L 727 (858)
T COG5215 689 LSS----EATHRDLKPAILSVFGDIALAIGANFESYLDMIMML 727 (858)
T ss_pred hcC----hhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 221 122334555 66777777666666666666666544
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-07 Score=113.37 Aligned_cols=572 Identities=16% Similarity=0.195 Sum_probs=337.6
Q ss_pred HHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCC---C
Q 000156 326 VCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCL---N 400 (2015)
Q Consensus 326 l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~---~ 400 (2015)
+.+.|+.+.. -...+-+..+++|+..+|.-+|-..-+|+..++..+=..++|..+.||.-+..||.+++.. +.. .
T Consensus 512 llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~ 591 (1172)
T KOG0213|consen 512 LLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQ 591 (1172)
T ss_pred HHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHH
Confidence 3344444444 2245567788999999999999988899999999999999999999999999999999987 222 2
Q ss_pred hHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 401 LVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 401 l~~il~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
++.++.-+..+.. |.. ..=..-|+.+..++.-.....-.-+..+++-.+.+-.+-++.+.++.-.+.+..++...|-+
T Consensus 592 fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~ 670 (1172)
T KOG0213|consen 592 FDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE 670 (1172)
T ss_pred HHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC
Confidence 4555665655544 322 11122222222222222211111122334444444444444444444444444444333322
Q ss_pred HHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q 000156 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (2015)
Q Consensus 480 ~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~ 559 (2015)
+--...+-|. +.+..-. .++. ++-++
T Consensus 671 ~~y~r~dilp--------~ff~~fw-----------------------------~rrm-----A~drr------------ 696 (1172)
T KOG0213|consen 671 PAYIRFDILP--------EFFFSFW-----------------------------GRRM-----ALDRR------------ 696 (1172)
T ss_pred HHHHhhhhhH--------HHHhhhh-----------------------------hhhh-----hcccc------------
Confidence 1100000000 0000000 0000 00000
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCCCCCC---CHHHHHHHhh-ccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhcccc
Q 000156 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEM---SLEEIESRLG-SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL 635 (2015)
Q Consensus 560 ~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~---s~ee~e~~~~-~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~ 635 (2015)
.+.. +.-++..++. +.+-.-++..+.|..-..|...++.+..++...+..
T Consensus 697 --------------------------~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 697 --------------------------NYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred --------------------------chhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 0000 0011111110 111234566778888888888888888888775443
Q ss_pred c--h-HHHHHHHHHhcCCCCc--ccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc--hhhhHHHHHHHHH
Q 000156 636 D--Q-SVEILVRLVCMLPGWS--EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTT 708 (2015)
Q Consensus 636 ~--~-~~~~Lv~~L~~~pg~~--DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~~~L~~ 708 (2015)
+ . .-+-+++.+.. .|. ++.-.|+-.+|-.+ +..++.-.+.++..++..++-+|-+ +++|..|.+++..
T Consensus 751 diderleE~lidgil~--Afqeqtt~d~vml~gfg~V---~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~ 825 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILY--AFQEQTTEDSVMLLGFGTV---VNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISS 825 (1172)
T ss_pred cccHHHHHHHHHHHHH--HHHhcccchhhhhhhHHHH---HHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 2 1 12334443321 132 22223444444333 3333322345566677777777766 5789999888887
Q ss_pred HHhhh---ChhHHHH----HHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC--ChhhHHHHHHhcCCCCCchhHHHHH
Q 000156 709 FSEAV---GPGFIFE----RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQSSAAATRNAT 779 (2015)
Q Consensus 709 l~e~~---~~~~Vl~----~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l--~~k~li~~l~~~gL~~sn~~VR~aA 779 (2015)
++-.. +-+..+. .|++.+ .-.-|.|.-..|..|..++.-+|.... +++.+++-+-.. |.+...-|...+
T Consensus 826 la~Vlktc~ee~~m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPI-LknrheKVqen~ 903 (1172)
T KOG0213|consen 826 LAKVLKTCGEEKLMGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPI-LKNRHEKVQENC 903 (1172)
T ss_pred HHHHHHhccHHHHHHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHh-hhhhHHHHHHHH
Confidence 76543 2233333 345554 567899999999999999998887654 578899988888 999999999999
Q ss_pred HHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHH
Q 000156 780 IKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV 859 (2015)
Q Consensus 780 ~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll 859 (2015)
+.+++.+... |+. |. +.| +.. .|.=+|+
T Consensus 904 IdLvg~Iadr-gpE---~v-------------------------~aR----------------------EWM-RIcfeLl 931 (1172)
T KOG0213|consen 904 IDLVGTIADR-GPE---YV-------------------------SAR----------------------EWM-RICFELL 931 (1172)
T ss_pred HHHHHHHHhc-Ccc---cC-------------------------CHH----------------------HHH-HHHHHHH
Confidence 9999988643 211 00 000 000 1334666
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000156 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (2015)
Q Consensus 860 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp 939 (2015)
+.+.+.+=.+|..|.+.++-|.. .|.| .+++..|..-|+-.....+.-+--.|+-+++.+| +| .++|
T Consensus 932 elLkahkK~iRRaa~nTfG~Iak----aIGP---qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~----pF--tVLP 998 (1172)
T KOG0213|consen 932 ELLKAHKKEIRRAAVNTFGYIAK----AIGP---QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG----PF--TVLP 998 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH----hcCH---HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC----ch--hhhH
Confidence 66766666789999998887653 4554 4577777665532222222212222333333333 33 6899
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC-C--CCh
Q 000156 940 DILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-F--PDA 1010 (2015)
Q Consensus 940 ~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~--~~~ 1010 (2015)
.+++-+.-...+|.+-...+|..+++.+| +-.+.|.|.++|-+. .+.-|+...+.+.-..-+... . ..+
T Consensus 999 almneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr--D~vhRqta~~~I~Hl~Lg~~g~g~eda~ 1076 (1172)
T KOG0213|consen 999 ALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR--DLVHRQTAMNVIKHLALGVPGTGCEDAL 1076 (1172)
T ss_pred HHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc--cHHHHHHHHHHHHHHhcCCCCcCcHHHH
Confidence 99999999999999999999999999887 346778888888765 356677666655432222221 1 123
Q ss_pred hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000156 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2015)
Q Consensus 1011 ~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2015)
.+++.-+...+-|.++-|-.+..+|+..+...+|...|.+++
T Consensus 1077 iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1077 IHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred HHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 445555777789999999999999999999999999998886
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.1e-09 Score=123.43 Aligned_cols=211 Identities=19% Similarity=0.274 Sum_probs=174.2
Q ss_pred hhhhhc-cCChHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhhhcchhhhH
Q 000156 290 FWEGVK-ATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (2015)
Q Consensus 290 f~~~l~-s~kWkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (2015)
....+. +..-.+|++|+.+|..+... -.++...|.+|+..+..++.| .+......|++.|+.+++.....|..+.+
T Consensus 291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE 370 (516)
T KOG2956|consen 291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE 370 (516)
T ss_pred HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence 333443 45888999999999987742 334556789999999999998 78888999999999999999999999999
Q ss_pred hHHHHHHHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000156 366 FLLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~-V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (2015)
..+-.+|+..+|.... ++.|...|+..+..+ .++ ..+.-|...+.+-.-+.-..+++.++++++..+...+...++
T Consensus 371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~--~P~-~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASH--LPL-QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh--Cch-hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 9999999999998764 566666667777665 333 334444444444444455678889999999999998999999
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcC
Q 000156 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2015)
Q Consensus 445 ~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (2015)
+++|.++++.+.+...||++|.-||.++...+|++.+.|++.+|...+++.|+=|+.++
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988899999999999999999888764
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.9e-06 Score=102.91 Aligned_cols=565 Identities=16% Similarity=0.149 Sum_probs=337.3
Q ss_pred ccCChHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH-------Hhhhcchhh--
Q 000156 295 KATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-------GLRTHFSGS-- 363 (2015)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~-------~L~~~f~~~-- 363 (2015)
.+.+-+.|..|+..|.+|.+- ..+.+.--..++..-.+.+...|-.|...|+..-..++. ..+..++.+
T Consensus 227 q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 566778899999999988741 111111112244444556677787787777665553332 223333333
Q ss_pred ----------hHhHHHHHHHHhcc--Cc-----HHHHHHHHHHHHHHHHhcC--CChHhHHHHHHHHhhcCChHHHHHHH
Q 000156 364 ----------SRFLLPVLLEKLKE--KK-----PTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTL 424 (2015)
Q Consensus 364 ----------~~~llp~LL~klkd--kk-----~~V~~aa~~aL~al~~~~~--~~l~~il~~l~~~L~~Knp~vR~~~l 424 (2015)
+..++|.||+.+-. .. =++..|+..||.-+... | .=+.-++|.|...+++.+|.-|..+.
T Consensus 307 p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-~~D~Iv~~Vl~Fiee~i~~pdwr~reaav 385 (859)
T KOG1241|consen 307 PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-VGDDIVPHVLPFIEENIQNPDWRNREAAV 385 (859)
T ss_pred chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-hcccchhhhHHHHHHhcCCcchhhhhHHH
Confidence 34899999999833 22 24788999999877764 2 11344566666677789999999988
Q ss_pred HHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCC
Q 000156 425 NWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504 (2015)
Q Consensus 425 ~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~ 504 (2015)
-.+...+..-.+..+.+.....+|.+...+.|+.--||+.+.-+|+.+...+.+...+... -..++.-++++.-
T Consensus 386 mAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~------l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 386 MAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQEL------LQSKLSALLEGLN 459 (859)
T ss_pred HHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhh------hhHHHHHHHHHhh
Confidence 8888888776666777888999999999999999999999999999999888754322110 1112222222210
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 000156 505 GDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDV 584 (2015)
Q Consensus 505 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~ 584 (2015)
+. |. .+ . ..
T Consensus 460 De-------------------Pr--------va------------------------------------~----N~---- 468 (859)
T KOG1241|consen 460 DE-------------------PR--------VA------------------------------------S----NV---- 468 (859)
T ss_pred hC-------------------ch--------HH------------------------------------H----HH----
Confidence 00 00 00 0 00
Q ss_pred CCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCC---CCcccHHHHHH
Q 000156 585 EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP---GWSEKNVQVQQ 661 (2015)
Q Consensus 585 ~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~p---g~~DsN~qV~~ 661 (2015)
.-..++.-|. +++..-+. ...+..++..+.++.-|.+.- .-+++| .+.
T Consensus 469 CWAf~~Laea--------------------------~~eA~~s~-~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN--LR~ 519 (859)
T KOG1241|consen 469 CWAFISLAEA--------------------------AYEAAVSN-GQTDPATPFYEAIIGSLLKVTDRADGNQSN--LRS 519 (859)
T ss_pred HHHHHHHHHH--------------------------HHHhccCC-CCCCccchhHHHHHHHHHhhccccccchhh--HHH
Confidence 0000000000 00000000 001111223444554443221 124455 567
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHH
Q 000156 662 QVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILW 741 (2015)
Q Consensus 662 ~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~ 741 (2015)
.++++|..++..+++-....+..+.+.+.+||.. ++. .+++...-.++--.++.-.+.+
T Consensus 520 AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q---------~i~------------~~~l~~~dr~q~~eLQs~Lc~~ 578 (859)
T KOG1241|consen 520 AAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQ---------TIS------------SQILSLADRAQLNELQSLLCNT 578 (859)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH---------HHH------------HHhccHhhHHHHHHHHHHHHHH
Confidence 8899999999876543333333444445555433 111 0111110011112234445677
Q ss_pred HHHHHHHhCCCCCC-hhhHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCC
Q 000156 742 MVSAVEDFGVSHLK-LKDLIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (2015)
Q Consensus 742 L~~li~~fG~~~l~-~k~li~~l~~~gL~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~ 819 (2015)
|..++..+|..... ...++..+... ++. ....|-+-|.-.+++|...+|..|..|+..++|-+...+...-
T Consensus 579 Lq~i~rk~~~~~~~~~d~iM~lflri-~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~------ 651 (859)
T KOG1241|consen 579 LQSIIRKVGSDIREVSDQIMGLFLRI-FESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ------ 651 (859)
T ss_pred HHHHHHHccccchhHHHHHHHHHHHH-HcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch------
Confidence 88888888874322 34566666666 777 4566889999999999999999999999888887766653311
Q ss_pred CCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHH
Q 000156 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGG 899 (2015)
Q Consensus 820 ~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~ 899 (2015)
++.+-..++-.+..+.+.-+..|.|.. .+++..
T Consensus 652 ----------------------------------------------e~qVc~~aVglVgdl~raL~~~i~py~-d~~mt~ 684 (859)
T KOG1241|consen 652 ----------------------------------------------EYQVCAAAVGLVGDLARALEDDILPYC-DELMTV 684 (859)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHH
Confidence 122233445556666654344566654 789999
Q ss_pred HHhccccc--hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh---CCC--------cHHHHHHHHHHHHHHHHh
Q 000156 900 LRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---GDN--------KKHMRECTLTVLDAWLAA 966 (2015)
Q Consensus 900 L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L---~D~--------k~~Vr~aa~~aL~~i~~~ 966 (2015)
|.+.|+.. +.+|.-.-+.+++.||-++|.+|++|+..++|.+-..- .|. -..+|+++.++-+.++.-
T Consensus 685 Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qg 764 (859)
T KOG1241|consen 685 LVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQG 764 (859)
T ss_pred HHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998654 45677788999999999999999999999999887655 222 125899999998888877
Q ss_pred cC-------chhhHHHHHHHHh----cCCCChhHHHHHHHHHHHHhccCCCC---C-ChhhhHHH-HHhhcCCCChHHHH
Q 000156 967 VH-------LDKMVPYVTTALT----DAKLGAEGRKDLFDWLSKQLTGLSGF---P-DAAHLLKP-ASIAMTDKSSDVRK 1030 (2015)
Q Consensus 967 ~g-------l~~ll~~l~~~L~----~~k~~p~~R~~~l~~L~~~l~~~~~~---~-~~~~ll~p-l~~~L~D~~~~VR~ 1030 (2015)
++ +..++|.|...+. ++..+..+-..+++.+......++.. . ...+++.- |..+..-+....|+
T Consensus 765 lk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~ 844 (859)
T KOG1241|consen 765 LKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKD 844 (859)
T ss_pred hhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHH
Confidence 65 2345555555543 22222234455666666655555431 1 12345555 44566556666777
Q ss_pred HHHHHHHHHHH
Q 000156 1031 AAEACIVEILR 1041 (2015)
Q Consensus 1031 aA~~~L~~l~~ 1041 (2015)
.|.-+...+-+
T Consensus 845 ~A~wa~e~ikr 855 (859)
T KOG1241|consen 845 LARWATEEIKR 855 (859)
T ss_pred HHHHHHHHHHH
Confidence 77766655543
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-08 Score=121.90 Aligned_cols=378 Identities=17% Similarity=0.208 Sum_probs=263.2
Q ss_pred cHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchH--HHHHHHHHhcC-CCCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000156 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (2015)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~--~~~Lv~~L~~~-pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (2015)
++.+..+|.|+.+..|.+|.-++++++++.-..++. ..-++..|... -.=.++|. ...+|-.+...+-.++.-..
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~--rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANM--RKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccc--ccchHHHHHHHHHHhccccH
Confidence 456789999999999999999999999873222222 22334433210 00012222 22444444443333343233
Q ss_pred hHHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhhChh------HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC
Q 000156 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (2015)
Q Consensus 680 ~~~~~il~~LveKlgD~--K~r~~a~~~L~~l~e~~~~~------~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~ 751 (2015)
.+...+++.++..++|. ++|--|.+.|..++.....+ .++..+++.. .....-|+ ++.+-+..++++.-.
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kls-aDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLS-ADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHh-cCCccccc-cHHHHHHHHHHHhcc
Confidence 47888999999999984 78999999999999876544 3455555542 23333333 333444445554432
Q ss_pred C---CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccc
Q 000156 752 S---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (2015)
Q Consensus 752 ~---~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~ 828 (2015)
+ .+++..+++.+..- +-..||.+|..-+..+..|+...+-.+-.|+.+
T Consensus 158 e~~~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~---------------------------- 208 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPS---------------------------- 208 (675)
T ss_pred ccccccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchH----------------------------
Confidence 2 47888999999987 888999999999888887775444333333322
Q ss_pred cCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC--ChhhHHHHHHhcccc
Q 000156 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA--GTGELFGGLRGRLYD 906 (2015)
Q Consensus 829 r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~--~~~eL~~~L~~rL~D 906 (2015)
+.+.++..++|.+-.+|.-+=..+.+++.+- +-.|. +|++.+..|...+..
T Consensus 209 -------------------------~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI--~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 209 -------------------------LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI--RSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred -------------------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH--hcCccccCcccchhhccccccC
Confidence 3346677778888888865555566666542 11221 478999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC---------chhhHHHH
Q 000156 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH---------LDKMVPYV 976 (2015)
Q Consensus 907 sN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~g---------l~~ll~~l 976 (2015)
++.-++..|+..|.++++--|+++-.|...++..++.++.|+.. .++..+...-+.+..-++ +..+++.+
T Consensus 262 s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999887 577766555444443332 34777888
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 977 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 977 ~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
...+.+. ..+.|.++++|+.-.+.+.+.. -+..++...+++.|.|++.+|-..+-..+..+...
T Consensus 342 ~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 342 TKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 8888876 4689999999999877777653 34566777799999999999999998888877644
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.9e-08 Score=118.85 Aligned_cols=400 Identities=15% Similarity=0.174 Sum_probs=281.2
Q ss_pred HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHH
Q 000156 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (2015)
Q Consensus 717 ~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~ 795 (2015)
.++++++.-.....+.-.|.+.|..+..+.-..|.+... ++.+++.+..+ +++++..||.-|.+.+-.+.+....++.
T Consensus 42 k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c-f~D~d~~vRyyACEsLYNiaKv~k~~v~ 120 (675)
T KOG0212|consen 42 KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC-FSDQDSQVRYYACESLYNIAKVAKGEVL 120 (675)
T ss_pred HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh-ccCccceeeeHhHHHHHHHHHHhccCcc
Confidence 345544443323333333448888888887777876422 45566666665 9999999999999988877777766666
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHH
Q 000156 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (2015)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale 875 (2015)
.|++.+-.++. |+.. |.+-.+| .|.+
T Consensus 121 ~~Fn~iFdvL~--------klsa---------------------------------------------Dsd~~V~-~~ae 146 (675)
T KOG0212|consen 121 VYFNEIFDVLC--------KLSA---------------------------------------------DSDQNVR-GGAE 146 (675)
T ss_pred cchHHHHHHHH--------HHhc---------------------------------------------CCccccc-cHHH
Confidence 66654333322 2211 1110011 1122
Q ss_pred HHH----HHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHH
Q 000156 876 AVN----KILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951 (2015)
Q Consensus 876 ~L~----~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~ 951 (2015)
.+. +|+.+... +.+ +.++++.|+.|+.+.|...++.-+..+..|-..-+-+|-.|...+++++++.|+|+...
T Consensus 147 LLdRLikdIVte~~~--tFs-L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~e 223 (675)
T KOG0212|consen 147 LLDRLIKDIVTESAS--TFS-LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDE 223 (675)
T ss_pred HHHHHHHHhcccccc--ccC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHH
Confidence 222 23322101 222 58999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcC
Q 000156 952 MRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMT 1022 (2015)
Q Consensus 952 Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~ 1022 (2015)
||.-+..+|..+...+. .+.+++.+.+-++++ +|..+.-++.|+.+.+...+.. .....++..++.|+.
T Consensus 224 Vr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s 301 (675)
T KOG0212|consen 224 VRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLS 301 (675)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCC
Confidence 99999999999987752 456777777777765 5889999999999988765542 334556667888998
Q ss_pred CCCh-HHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000156 1023 DKSS-DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNR 1101 (2015)
Q Consensus 1023 D~~~-~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1101 (2015)
|... .++..|+..-+.++..++.+....- +
T Consensus 302 ~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~---i---------------------------------------------- 332 (675)
T KOG0212|consen 302 DTEEMSIKEYAQMVNGLLLKLVSSERLKEE---I---------------------------------------------- 332 (675)
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhccc---c----------------------------------------------
Confidence 8777 5787777555555555544321100 0
Q ss_pred CCccCCCCCCCCCCCCccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcc
Q 000156 1102 AISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLS 1181 (2015)
Q Consensus 1102 s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lf~ 1181 (2015)
+ | ..-+| .+...+++
T Consensus 333 -------------------------d------------------------~----~~ii~------------vl~~~l~~ 347 (675)
T KOG0212|consen 333 -------------------------D------------------------Y----GSIIE------------VLTKYLSD 347 (675)
T ss_pred -------------------------c------------------------h----HHHHH------------HHHHHhhc
Confidence 0 0 00111 23334455
Q ss_pred cCHHHHHHHHHHHHHhcCcChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHH
Q 000156 1182 TDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1261 (2015)
Q Consensus 1182 ~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L 1261 (2015)
+.-..|+++++=+.-.....+-+++.+.|-||--+..-+.|+.-.|+.+.|+.+..+..--..-+ -..|+-.|
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~-------~~~fl~sL 420 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPN-------LRKFLLSL 420 (675)
T ss_pred chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccccc-------HHHHHHHH
Confidence 55567889998888888888888888889899988889999999999999999998654433332 27788888
Q ss_pred HHhhcCChHHHHHHHHHHHHHHhhccCccccHHHHH
Q 000156 1262 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYIL 1297 (2015)
Q Consensus 1262 ~~K~Gd~k~~vr~~v~~il~~i~~vy~~skvf~~l~ 1297 (2015)
++..-+-+--++.+--=|++++|...-+..||..+.
T Consensus 421 L~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a 456 (675)
T KOG0212|consen 421 LEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIA 456 (675)
T ss_pred HHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHH
Confidence 888877666777777788999999999999998753
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-08 Score=119.36 Aligned_cols=190 Identities=18% Similarity=0.190 Sum_probs=133.0
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChh-----------
Q 000156 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA----------- 929 (2015)
Q Consensus 861 ~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~----------- 929 (2015)
-+.++.-|+-...+..+..|+..+...+.+..+--+.--|...|+..|+.++..|-..+|.|+.+.|+.
T Consensus 696 ILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk 775 (975)
T COG5181 696 ILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK 775 (975)
T ss_pred hhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch
Confidence 445666777778888888887654444443333334445566667789999999999999999999874
Q ss_pred ----------------hHHhh--hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCC
Q 000156 930 ----------------VEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKL 985 (2015)
Q Consensus 930 ----------------f~~~~--~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~ 985 (2015)
...|. -.++|.++.-+.-...+|.+-...++..+++.+| +-.+.|.+.++|.+.
T Consensus 776 vqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr-- 853 (975)
T COG5181 776 VQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR-- 853 (975)
T ss_pred HHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc--
Confidence 00110 1456777777777788888888888888888776 234667777777765
Q ss_pred ChhHHHHHHHHHHHHhccCCC-CC--ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000156 986 GAEGRKDLFDWLSKQLTGLSG-FP--DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2015)
Q Consensus 986 ~p~~R~~~l~~L~~~l~~~~~-~~--~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2015)
.|.-|+...+.+.-..-+.+. .. ....++.-+...+-|.++-|-.+..+++..|..++|...|.+++
T Consensus 854 D~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv 923 (975)
T COG5181 854 DPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYV 923 (975)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 466677766666543333222 11 22445555777789999999999999999999999999999886
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.3e-07 Score=116.85 Aligned_cols=562 Identities=18% Similarity=0.135 Sum_probs=324.8
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHH
Q 000156 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~ 373 (2015)
+...+-..|..+...+..+.-..+.... -..+++.+...+ |.+.-|...+..=++.+...-+ -..|...++|.+..
T Consensus 91 ~~~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~ 166 (759)
T KOG0211|consen 91 LSNTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLEL 166 (759)
T ss_pred cCchhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHh
Confidence 4445566677776666554421111111 456777787877 7776665555444444433322 12566777888877
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh---cCCh-HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000156 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK---NKVP-LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2015)
Q Consensus 374 klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~---~Knp-~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2015)
..-+....||+++.+++..+... .+=....+.+...+. ..-| +-|.-++..+..+....+...+ -..+.|.
T Consensus 167 l~~~eet~vr~k~ve~l~~v~~~--~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v---k~elr~~ 241 (759)
T KOG0211|consen 167 LATVEETGVREKAVESLLKVAVG--LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV---KRELRPI 241 (759)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH---HHHHHHH
Confidence 77888888999999999988764 222223333333222 1122 3355556666665555443222 2567788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCC
Q 000156 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEAS 529 (2015)
Q Consensus 450 l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 529 (2015)
......|..+.||.++.+-++.+.+.++..... ..+.+...
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~~------------------------------------ 282 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTLI------------------------------------ 282 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHHh------------------------------------
Confidence 889999999999999999999999888863111 00010000
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhh
Q 000156 530 ESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQ 609 (2015)
Q Consensus 530 ~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~ 609 (2015)
..
T Consensus 283 ------------------------------------------------------------------------------~L 284 (759)
T KOG0211|consen 283 ------------------------------------------------------------------------------QL 284 (759)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 00
Q ss_pred hccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 000156 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGI 689 (2015)
Q Consensus 610 L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~L 689 (2015)
+.+..=..|+.|++.+.++.......++....+...+.. -..|.+..|.-..-+....+....+. . ..-...++..
T Consensus 285 ~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~--~~~d~~~~v~~~~~~~~~~L~~~~~~-~-~~~~~~~~~~ 360 (759)
T KOG0211|consen 285 LRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQ--AVEDGSWRVSYMVADKFSELSSAVGP-S-ATRTQLVPPV 360 (759)
T ss_pred hhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH--HhcChhHHHHHHHhhhhhhHHHHhcc-c-cCcccchhhH
Confidence 011112235555555555544432221111111111110 12344444443333333333332222 0 0111223444
Q ss_pred Hhhhcchh--hhHHHHHHHHHHHhhhC----hhHHHHHHHHHh---hhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHH
Q 000156 690 SERVADIK--TRAHAMKCLTTFSEAVG----PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 760 (2015)
Q Consensus 690 veKlgD~K--~r~~a~~~L~~l~e~~~----~~~Vl~~L~~~l---~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li 760 (2015)
.+-++|.. .|.++..-...++...+ ++...+.+++.+ ..+.|+.|+......+......+|... .+..++
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~-ti~~ll 439 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER-TISELL 439 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc-CccccC
Confidence 44555543 33333333444444433 333333333322 346777777777766666655555321 234455
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCC
Q 000156 761 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840 (2015)
Q Consensus 761 ~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~ 840 (2015)
+..... +.+-.+.||..-+..+..+ +.+... .
T Consensus 440 p~~~~~-l~de~~~V~lnli~~ls~~---------------------------~~v~~v----~---------------- 471 (759)
T KOG0211|consen 440 PLLIGN-LKDEDPIVRLNLIDKLSLL---------------------------EEVNDV----I---------------- 471 (759)
T ss_pred hhhhhh-cchhhHHHHHhhHHHHHHH---------------------------HhccCc----c----------------
Confidence 555554 6666677776554332111 111100 0
Q ss_pred CCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHH
Q 000156 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLG 920 (2015)
Q Consensus 841 ~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~ 920 (2015)
|. .-.+..+.+.+.....|.+|++|.+.++.+-.++..-...+.. ..+...+...+.|--..++..|.+.+.
T Consensus 472 g~-----~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~---~~~~~l~~~~l~d~v~~Ir~~aa~~l~ 543 (759)
T KOG0211|consen 472 GI-----STVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD---EKLAELLRTWLPDHVYSIREAAARNLP 543 (759)
T ss_pred cc-----hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh---HHHHHHHHhhhhhhHHHHHHHHHHHhH
Confidence 00 0011123345555667779999999999999888643211111 224445556678877889999999999
Q ss_pred HHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhHHHHHHHH
Q 000156 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDW 996 (2015)
Q Consensus 921 ~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----~~ll~~l~~~L~~~k~~p~~R~~~l~~ 996 (2015)
.++...|..+ +...++|.++...++..-.+|.+...++..++..+|- +.++|.+.....++ .|.+|..++..
T Consensus 544 ~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~ 619 (759)
T KOG0211|consen 544 ALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKH 619 (759)
T ss_pred HHHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHH
Confidence 9999999665 4468999999999999889999999999999999984 44666666666666 58999999999
Q ss_pred HHHHhccCCCCCChhhhHHHHHhhc-CCCChHHHHHHHHHHHHHHHHcChhH
Q 000156 997 LSKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQET 1047 (2015)
Q Consensus 997 L~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~~VR~aA~~~L~~l~~~~G~~~ 1047 (2015)
|...+..... +.....+.|+..+| .|.+.+||-.|..++..+..+.-+..
T Consensus 620 L~~i~~~L~~-~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~ 670 (759)
T KOG0211|consen 620 LPKILKLLDE-SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESS 670 (759)
T ss_pred HHHHHhhcch-HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhh
Confidence 9887665543 23456677755554 89999999999999998877665543
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.3e-06 Score=108.97 Aligned_cols=286 Identities=15% Similarity=0.188 Sum_probs=189.4
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC---CCcChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCch
Q 000156 127 DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA---KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP 203 (2015)
Q Consensus 127 ~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~---~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~ 203 (2015)
..+.+.|..+..+-||..+.+.+-||...++.-|. .+...+.|+..+..+|++.|.=+.+.|..-++-+|- +|+.
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe-lgd~- 894 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE-LGDS- 894 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe-cCCc-
Confidence 34556667788899999999999999999998884 234568899999999999999999998877777774 4442
Q ss_pred hhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhh-HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 000156 204 VKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD-KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDIL 282 (2015)
Q Consensus 204 l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~-~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl 282 (2015)
.+|..+.+.|-..|-. |..+- .+- .+.+. .+...-|..+ ....+..|
T Consensus 895 -------~~k~~LV~sL~~tl~~--Gkr~~------~~vs~eTel-Fq~G~Lg~Tp-------~Gg~isTY--------- 942 (1702)
T KOG0915|consen 895 -------SLKKSLVDSLVNTLTG--GKRKA------IKVSEETEL-FQEGTLGKTP-------DGGKISTY--------- 942 (1702)
T ss_pred -------hhHHHHHHHHHHHHhc--ccccc------ceeccchhc-ccCCcCCCCC-------CCCcchHH---------
Confidence 2333334444333321 21110 000 00000 0000011110 11122222
Q ss_pred ccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcch
Q 000156 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS 361 (2015)
Q Consensus 283 ~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (2015)
++|..|++. +. -.+++--+...-+ .+-=+-...|+--++.|++.-+...+
T Consensus 943 ------------------------KELc~LASd--l~---qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~ 993 (1702)
T KOG0915|consen 943 ------------------------KELCNLASD--LG---QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLE 993 (1702)
T ss_pred ------------------------HHHHHHHhh--cC---ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhh
Confidence 233333321 00 1122222222222 11111234556666777777788889
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000156 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2015)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~----~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2015)
||.+.++|-|.--=-|..+.|+++....-++++.-. .-.+.+|+++++.+|.+|-|+||+.++..|..+++..+..
T Consensus 994 p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~ 1073 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFD 1073 (1702)
T ss_pred hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChH
Confidence 999999999998888999999998888777776420 0235678899999999999999999999999999998887
Q ss_pred HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 438 ~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
.+.+.++.+-.++...++|-...||+||-.+...+.++
T Consensus 1074 ~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1074 QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78788899999999999999999999998887665544
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-05 Score=99.08 Aligned_cols=691 Identities=16% Similarity=0.219 Sum_probs=376.4
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHh-hhcCCcHHHHHHHHHHHHHHHHHhc----------
Q 000156 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVADSNAPVQDKALDALIAYLKAAD---------- 84 (2015)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k-~v~DsN~~vqe~~leal~~~l~~~~---------- 84 (2015)
+.=+++...-..|.+|+..|.+.-.+- .....|++..+++.. -+.|.---..-+-++-++.=+.-..
T Consensus 173 llLkvKNG~~~mR~~~lRiLtdkav~f--g~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvV 250 (975)
T COG5181 173 LLLKVKNGGKRMRMEGLRILTDKAVNF--GAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVV 250 (975)
T ss_pred HHhhcccCCchhhHHHHHHHHHHhhcc--cHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEE
Confidence 334567777888999999988775432 223455555554443 3555554444555554444322211
Q ss_pred -------hhhhhh--HHHHHHHHHHhhc-C----C-C-------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hcCC
Q 000156 85 -------ADAGRY--AKEVCDAIAAKCL-T----G-R-------PKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-KNKV 141 (2015)
Q Consensus 85 -------~~~~~~--~~~v~~~LieK~l-~----~-k-------~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~-~~Kn 141 (2015)
++..+. ..+|+..|+..|. + + | +=+|+..-.+.-.++..-..+.++.-|.... +.|.
T Consensus 251 v~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkS 330 (975)
T COG5181 251 VGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKS 330 (975)
T ss_pred eeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccc
Confidence 011111 2355556665542 1 0 1 1223322222222222222333444443332 4679
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCcC-hhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhh-ChH-----
Q 000156 142 AKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEK-MRD----- 214 (2015)
Q Consensus 142 pKv~~~~l~~L~~~l~~fG~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~-Lk~----- 214 (2015)
|+.+-.|+.++.++..-.|..+++ ++++++.+.+++.|...-||=.+...+..++...|+=-+ .. |+. +.|
T Consensus 331 w~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygi-e~-fd~vl~pLw~g~ 408 (975)
T COG5181 331 WEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGI-EQ-FDEVLCPLWEGA 408 (975)
T ss_pred hhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcch-HH-HHHHHHHHHHHH
Confidence 999999999999999999998776 799999999999999999999999998888888886211 11 111 111
Q ss_pred --HHHHHHHHHHHhcCCCCCCCc-------cchhhhhHhhhhhccccCCCCCCCCCCC---------CCCCCCCCCCCCC
Q 000156 215 --TMKKELEVELVNVSGTARPTR-------KIRAEQDKELGQELISEDVGPGPSEEST---------ADVPPEIDEYELV 276 (2015)
Q Consensus 215 --~q~keLe~~f~k~~~~~~P~R-------~~rs~~~~~~~~ea~~~~~~~~~~~~~~---------~~~~~~iD~~dl~ 276 (2015)
.-=++|-..+ |.-|-.-|.. ++|.... -.-.+..+ ++++.. =...+.++|+-+.
T Consensus 409 ~~hrgk~l~sfL-kA~g~iiplm~peYa~h~tre~m~-iv~ref~s------pdeemkk~~l~v~~~C~~v~~~tp~~lr 480 (975)
T COG5181 409 SQHRGKELVSFL-KAMGFIIPLMSPEYACHDTREHME-IVFREFKS------PDEEMKKDLLVVERICDKVGTDTPWKLR 480 (975)
T ss_pred HhcCCchHHHHH-HHhccccccCChHhhhhhHHHHHH-HHHHHhCC------chhhcchhHHHHHHHHhccCCCCHHHHH
Confidence 1011111111 1112212211 0111000 00000000 000000 0011223444333
Q ss_pred CcccccccCcchhhhhhhccCChHHHHHH---------HHH--HHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHH
Q 000156 277 DPVDILTPLEKSGFWEGVKATKWSERKDA---------VAE--LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEA 345 (2015)
Q Consensus 277 ~~vdIl~kl~~~~f~~~l~s~kWkeR~ea---------L~~--L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A 345 (2015)
+.| . +.| -+..|.+|.+. +.. |.+.... ..+++.+..-+.|.--.-+..+
T Consensus 481 ~~v------~-pef----F~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~--------~~v~~kil~~~~De~ep~r~m~ 541 (975)
T COG5181 481 DQV------S-PEF----FSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD--------PRVSRKILEYYSDEPEPYRKMN 541 (975)
T ss_pred Hhh------c-HHh----hchHHHhhhcccccccceeehhHHHHHHHcCC--------hHHHHHHHhhccCCcchhhhhh
Confidence 311 1 234 45779888765 111 1111111 2345555555566655555666
Q ss_pred HHHHHHHHHHhh-hcch-hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh----cCCChHhHHHHHHHHhhcCChHH
Q 000156 346 IQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA----GCLNLVDVVEDVKTSVKNKVPLV 419 (2015)
Q Consensus 346 ~~~l~~La~~L~-~~f~-~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~----~~~~l~~il~~l~~~L~~Knp~v 419 (2015)
+.+...+...++ .+|+ +....++-.++..|.+....+.- ...|..++... +-..+..++..++.-|+||.|.+
T Consensus 542 a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~-il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~v 620 (975)
T COG5181 542 AGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGL-ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDV 620 (975)
T ss_pred hHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccE-EEecccceeeehhhccCcchHHHHHHHHHHhcCCCccH
Confidence 666666666665 3464 56777888888888776544321 11222221111 12456788888999999999999
Q ss_pred HHHHHHHHHHH---HHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHH
Q 000156 420 RSLTLNWVTFC---IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (2015)
Q Consensus 420 R~~~l~~L~~~---l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI 496 (2015)
|+.++..++.+ +..|..... +.-+--+|...|+.-+|+|=-.-..|+-.+..+.|.+.+
T Consensus 621 R~~aadl~~sl~~vlk~c~e~~~---l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m--------------- 682 (975)
T COG5181 621 RIRAADLMGSLAKVLKACGETKE---LAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM--------------- 682 (975)
T ss_pred HHHHHHHHHHHHHHHHhcchHHH---HHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc---------------
Confidence 99888776543 334433222 233344566666777777654444444444444443211
Q ss_pred HHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCC
Q 000156 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK 576 (2015)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~ 576 (2015)
.||..
T Consensus 683 -------------------------------------------------qpPi~-------------------------- 687 (975)
T COG5181 683 -------------------------------------------------QPPIS-------------------------- 687 (975)
T ss_pred -------------------------------------------------CCchh--------------------------
Confidence 01000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccH
Q 000156 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKN 656 (2015)
Q Consensus 577 ~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN 656 (2015)
+++| . |. |-++-.+
T Consensus 688 -----------------------~ilP-~------------------------------------lt------PILrnkh 701 (975)
T COG5181 688 -----------------------GILP-S------------------------------------LT------PILRNKH 701 (975)
T ss_pred -----------------------hccc-c------------------------------------cc------Hhhhhhh
Confidence 0000 0 00 1112223
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-c-hhHHHHHHHHHHhhhcc-hh-hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCCh
Q 000156 657 VQVQQQVIEVINYLAATATKF-P-KKCVVLCLLGISERVAD-IK-TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP 732 (2015)
Q Consensus 657 ~qV~~~~Le~l~~l~~~~~~~-~-~~~~~~il~~LveKlgD-~K-~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~Knp 732 (2015)
.+|....+.++..+..+.+.. + +.|+.+| =.|+|-|.. .| .|..|.+++.-+++++||+-|+..|+..+. ...-
T Consensus 702 ~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc-feLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk-vqeR 779 (975)
T COG5181 702 QKVVANTIALVGTICMNSPEYIGVREWMRIC-FELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK-VQER 779 (975)
T ss_pred HHHhhhHHHHHHHHHhcCcccCCHHHHHHHH-HHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch-HHHH
Confidence 344555555555555554432 2 2344433 345665554 23 789999999999999999999999998872 2222
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHH
Q 000156 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (2015)
Q Consensus 733 Kv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (2015)
..|..+--.++-+.+-.|.- .+++.+..- ...++.+|.+...+.++-||.++|..-++|.-.+
T Consensus 780 q~RvctsvaI~iVae~cgpf-----sVlP~lm~d-Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~i----------- 842 (975)
T COG5181 780 QQRVCTSVAISIVAEYCGPF-----SVLPTLMSD-YETPEANVQNGVLKAMCFMFEYIGQASLDYVYSI----------- 842 (975)
T ss_pred HhhhhhhhhhhhhHhhcCch-----hhHHHHHhc-ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 22333333333333444432 355555544 7788999999999999999999998776665333
Q ss_pred HhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC
Q 000156 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892 (2015)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~ 892 (2015)
+|-+.+.+.|.+---|..|+.-+.-+.-++...-....
T Consensus 843 ------------------------------------------tPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda 880 (975)
T COG5181 843 ------------------------------------------TPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDA 880 (975)
T ss_pred ------------------------------------------hHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHH
Confidence 33444555666666777787777776643210000001
Q ss_pred hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000156 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (2015)
Q Consensus 893 ~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~ 964 (2015)
+-.|+..|-.-+-|...-|.+...+.+..+++++|++ .++..+.+.|=.....||..-....+.+.
T Consensus 881 ~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g------~~m~Yv~qGLFHPs~~VRk~ywtvyn~my 946 (975)
T COG5181 881 AIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG------AMMKYVQQGLFHPSSTVRKRYWTVYNIMY 946 (975)
T ss_pred HHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH------HHHHHHHHhccCchHHHHHHHHHHHhhhh
Confidence 2234555555556777888899999999999999976 23333445555677778888776666554
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=115.58 Aligned_cols=184 Identities=18% Similarity=0.224 Sum_probs=159.8
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHH
Q 000156 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (2015)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (2015)
-+..+.+++|....++|..++.|.. ++......+++++-.+.+-++..|+.|...||.|++.|+..+.+........++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999884 777777778889889999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHH
Q 000156 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYV 447 (2015)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~ 447 (2015)
-.|+.+-.+.|..||+.+..||.+++.+ .++..+++.|..+++|.||.+|..++..+.+|+....- .....+....+
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999987 88899999999999999999999887777777665541 12234567788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 448 PICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 448 p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
+.+..-+.|.-|++|++|.-.+.....+
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVRLELKEV 278 (334)
T ss_pred HHHHhhhcccccccccchhHHHHhHHHH
Confidence 8999999999999999998776544443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-06 Score=121.45 Aligned_cols=270 Identities=18% Similarity=0.131 Sum_probs=158.7
Q ss_pred HHHHhhhcc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 000156 687 LGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764 (2015)
Q Consensus 687 ~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~ 764 (2015)
+.|++.|.| +.+|..|.+.|..+. +.-+++.|...+ .++++.||..++..|..+.+.... .+.+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~ 690 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------APALR 690 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------hHHHH
Confidence 344444444 457777777666553 333556666554 677888888888877666432211 12233
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCC
Q 000156 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844 (2015)
Q Consensus 765 ~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~ 844 (2015)
.+ |+++++.||.+|+..|+.+...--..+...|.+-.+.+....-..+.++
T Consensus 691 ~~-L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~---------------------------- 741 (897)
T PRK13800 691 DH-LGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV---------------------------- 741 (897)
T ss_pred HH-hcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc----------------------------
Confidence 44 7778888888888888775411000111122222222211111111110
Q ss_pred CCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 000156 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS 924 (2015)
Q Consensus 845 lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~ 924 (2015)
. -.+.++..+.|.++.+|..+.+.|..+-.. . ...+..|...++|.+..|+..|+..|+.+.
T Consensus 742 -~-------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~-~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g- 803 (897)
T PRK13800 742 -D-------DVESVAGAATDENREVRIAVAKGLATLGAG--------G-APAGDAVRALTGDPDPLVRAAALAALAELG- 803 (897)
T ss_pred -c-------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------c-chhHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Confidence 0 012355667788888888887777655321 0 222556667778888888888887776552
Q ss_pred HhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccC
Q 000156 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (2015)
Q Consensus 925 alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~ 1004 (2015)
.. ..+.+.++..|.|....||.+|..+|..+ +-...++.|...|.++ ++.+|.+++.-|...
T Consensus 804 ---~~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~---- 865 (897)
T PRK13800 804 ---CP-----PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW---- 865 (897)
T ss_pred ---Cc-----chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc----
Confidence 11 12345577778888888888888877643 3345567777778776 578888888777652
Q ss_pred CCCCChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000156 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2015)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~ 1037 (2015)
. ........|..+++|.+++||..|..+|.
T Consensus 866 ~---~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 P---GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred C---CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 11234455667788888888888887774
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00072 Score=90.42 Aligned_cols=656 Identities=14% Similarity=0.165 Sum_probs=355.4
Q ss_pred CCC-CCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhc-ch-hhhHhHHHHHHHHhccCcHHHHHHHHHH
Q 000156 315 TKR-IAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQT 389 (2015)
Q Consensus 315 ~~k-i~~~~y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~-f~-~~~~~llp~LL~klkdkk~~V~~aa~~a 389 (2015)
.|+ +.-..|+++...|...+. .+|-.|...++.||+.|-..-+.. +. +-....+-.++.-.-++++.||.++..+
T Consensus 82 VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~ 161 (1176)
T KOG1248|consen 82 VPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRG 161 (1176)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 454 333457888888888887 889999999999999988774422 32 3356677788888889999999999999
Q ss_pred HHHHHHhcCCChHhHHHH-------HHHHhhc-CChHHHHHHHH---HHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCC
Q 000156 390 LQAMHKAGCLNLVDVVED-------VKTSVKN-KVPLVRSLTLN---WVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458 (2015)
Q Consensus 390 L~al~~~~~~~l~~il~~-------l~~~L~~-Knp~vR~~~l~---~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~ 458 (2015)
+.++..+.|+.++..-|. .+..+.. -++..-..++. .|...+..|+... ++.++..+..++.-++
T Consensus 162 i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~l----i~sl~e~lL~i~~~s~ 237 (1176)
T KOG1248|consen 162 IAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPL----IKSLCEVLLNITTESP 237 (1176)
T ss_pred HHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHH----HHHHHHHHHhhcccch
Confidence 999997633332221111 1122221 11233333333 4444445555544 4888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccc
Q 000156 459 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538 (2015)
Q Consensus 459 ~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 538 (2015)
..|+-.+++|+..+.+.-.. .|+...-.++-.++-..+ |+. ..+-. .-.=.+.
T Consensus 238 v~v~~~~~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps~---------~D~~~-t~~W~~v-- 290 (1176)
T KOG1248|consen 238 VLVLLEVLQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PSE---------NDDLL-TVAWLKV-- 290 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CCc---------cchHH-HHHHHHH--
Confidence 99999999999887765543 122222222222221110 000 00000 0000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHH
Q 000156 539 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKER 618 (2015)
Q Consensus 539 ~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~R 618 (2015)
+ .+ +. ... ..+..|-+-..+..++ .-+.+ +..+.-+++
T Consensus 291 --~-~~---------------------~~-------~~l---------a~~q~~~~~~~~~~~~-~~~~t-~~~s~~~e~ 328 (1176)
T KOG1248|consen 291 --L-NE---------------------AH-------DIL---------ATLQEEKALQALPRLF-SLFFT-ILESLIEEL 328 (1176)
T ss_pred --H-HH---------------------HH-------HHH---------HHhCHHHHHHhhhhhh-hHHHH-HHhcccHHH
Confidence 0 00 00 000 0001111222222222 23344 555566666
Q ss_pred HHHHHHHHHHH-Hhccc-cchHHHH-HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc
Q 000156 619 LEAISSLRQQV-EAVQN-LDQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD 695 (2015)
Q Consensus 619 l~a~e~L~~~v-~~~~~-~~~~~~~-Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD 695 (2015)
+++.......+ +..-. .+..|.. +..+|.. .-..|...+|+++..+.+.|+..+...+-.++-.|.+.=++
T Consensus 329 ~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~------kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~ 402 (1176)
T KOG1248|consen 329 VQAASQSLKEILKESVTVIDALCSKQLHSLLDY------KFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRAS 402 (1176)
T ss_pred HHHHHHHHHHHhcccCcccHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcC
Confidence 66554443333 22111 1111222 2222221 22347778888888888888877777777788887774333
Q ss_pred --hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC-CC--hhhHHHHHHhc----
Q 000156 696 --IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH-LK--LKDLIDFCKDT---- 766 (2015)
Q Consensus 696 --~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~-l~--~k~li~~l~~~---- 766 (2015)
.-.+....+|+.+...+.||+.|+..+==.+ ++-.....=.||--++.++-... +. ...++++...+
T Consensus 403 ~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl----~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~ 478 (1176)
T KOG1248|consen 403 PDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL----HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKA 478 (1176)
T ss_pred CCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc----cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 3356677888888899999998776542221 22222223346666666543211 10 12233332211
Q ss_pred -CCCCCch---hHHHHHHHHH-----------------HHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCC-------
Q 000156 767 -GLQSSAA---ATRNATIKLL-----------------GALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF------- 818 (2015)
Q Consensus 767 -gL~~sn~---~VR~aA~~ll-----------------~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~------- 818 (2015)
++....- .+++..-++. ..++..+|..+.. =.++.+.+...|..-.+.+..
T Consensus 479 ~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e~ 557 (1176)
T KOG1248|consen 479 KKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAAEN 557 (1176)
T ss_pred HhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHHHH
Confidence 0111111 1122111111 1111112211110 023344444444443333310
Q ss_pred -------------------CCCCCCcccc-----------c------Ccccc-----CCC---CCCCCCC----------
Q 000156 819 -------------------EGTVVPKKTV-----------R------ASEST-----SSV---SSGGSDG---------- 844 (2015)
Q Consensus 819 -------------------~~~p~p~R~~-----------r------~~~~~-----~s~---~~~~~d~---------- 844 (2015)
..+++..|.. | +.... .+. .++.++.
T Consensus 558 ~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slL 637 (1176)
T KOG1248|consen 558 KEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLL 637 (1176)
T ss_pred HHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHH
Confidence 0011111000 0 00000 000 0000000
Q ss_pred ---------CCCcccccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhc-cccCCCCChhhHHHHHHhccccchHHHHH
Q 000156 845 ---------LPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (2015)
Q Consensus 845 ---------lprvdIs~~L~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a-~~~I~~~~~~eL~~~L~~rL~DsN~~V~~ 913 (2015)
.+...++... .+......+ +-++++.+.+-|..++..- ..........+++..|.+-++++...++.
T Consensus 638 dl~~~~a~~~~e~~vs~l~--~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~ 715 (1176)
T KOG1248|consen 638 DLLIALAPVQTESQVSKLF--TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQA 715 (1176)
T ss_pred HHHHhhhccccchhHHHHH--HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 0000111110 112222333 6778888888888887630 01112223467888899999999999999
Q ss_pred HHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--Hhc---C-------chhhHHHHHHHHh
Q 000156 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL--AAV---H-------LDKMVPYVTTALT 981 (2015)
Q Consensus 914 ~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~--~~~---g-------l~~ll~~l~~~L~ 981 (2015)
..|+++..|...++..+..+....+|-++-.+++.+..-|+.+.+||-.+. ... | +..+++.|...+.
T Consensus 716 ~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 716 SRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc
Confidence 999999999999998888888899998888889999999999999999888 321 3 3345556666655
Q ss_pred cCCCChhHHHHHHHHHHHHhccCC---CCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000156 982 DAKLGAEGRKDLFDWLSKQLTGLS---GFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (2015)
Q Consensus 982 ~~k~~p~~R~~~l~~L~~~l~~~~---~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~ 1058 (2015)
.+. +..+..-+-.+...+.+.. ....+..++..+..+|...+++||++|...+..++..+++.-+.+++..|=|.
T Consensus 796 gd~--~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 796 GDS--TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred ccH--HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 442 3444442333333333332 23345667777888999999999999999999999999998888777555443
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.71 E-value=4e-05 Score=101.54 Aligned_cols=460 Identities=16% Similarity=0.160 Sum_probs=298.6
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHH
Q 000156 291 WEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (2015)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (2015)
...+.+++-..|+=+.-.+..+.... +.-.--++..|.+=+.+.|..++..|+++++.++. ...++.++|.
T Consensus 48 i~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~ 118 (526)
T PF01602_consen 48 IKLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPD 118 (526)
T ss_dssp HCTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHH
Confidence 34456788888887766666655311 11123467788888889999999999999999872 3457789999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000156 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2015)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~-il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2015)
+.+.+.++++.||..|..|+..++......+.. +++.+...+.++++.|+..++..+..+ ..++......+..+...
T Consensus 119 v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~ 196 (526)
T PF01602_consen 119 VIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRI 196 (526)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHH
Confidence 999999999999999999999999873334455 789999999999999999999998887 34433322456777778
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCchHH--HHHHHhccHHHH----HHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000156 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL--ERSIEKLDDVRR----NKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (2015)
Q Consensus 450 l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~--~~~l~~Ld~~~~----kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 523 (2015)
+.+.+.+.+|-++-...+++..+...-... . ..+++.+.+.-. .-+-+++.-
T Consensus 197 L~~~l~~~~~~~q~~il~~l~~~~~~~~~~-~~~~~~i~~l~~~l~s~~~~V~~e~~~~--------------------- 254 (526)
T PF01602_consen 197 LCQLLSDPDPWLQIKILRLLRRYAPMEPED-ADKNRIIEPLLNLLQSSSPSVVYEAIRL--------------------- 254 (526)
T ss_dssp HHHHHTCCSHHHHHHHHHHHTTSTSSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred hhhcccccchHHHHHHHHHHHhcccCChhh-hhHHHHHHHHHHHhhccccHHHHHHHHH---------------------
Confidence 888889999999888777776443221111 1 122222221111 000010000
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000156 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (2015)
Q Consensus 524 ~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 603 (2015)
.. ... .+.+ +- ..+-
T Consensus 255 ------------------i~--------------------------------~l~----------~~~~-~~----~~~~ 269 (526)
T PF01602_consen 255 ------------------II--------------------------------KLS----------PSPE-LL----QKAI 269 (526)
T ss_dssp ------------------HH--------------------------------HHS----------SSHH-HH----HHHH
T ss_pred ------------------HH--------------------------------Hhh----------cchH-HH----HhhH
Confidence 00 000 0111 11 1123
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHH
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (2015)
..+...|.++++..|..+++.|..+.....+........+..+. .|.+..|...+++++..++.. ..+.
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n~~ 338 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SNVK 338 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HHHH
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cchh
Confidence 56778889999999999999998887664111112233333332 366677899999999988864 4566
Q ss_pred HHHHHHHhhhc---chhhhHHHHHHHHHHHhhhCh--hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhh
Q 000156 684 LCLLGISERVA---DIKTRAHAMKCLTTFSEAVGP--GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD 758 (2015)
Q Consensus 684 ~il~~LveKlg---D~K~r~~a~~~L~~l~e~~~~--~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~ 758 (2015)
.++..+..-+. |...+..+...+..+++.+.+ ++.++.+++.+ ...+..+..+++..+.+++...... -..
T Consensus 339 ~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~~~ 414 (526)
T PF01602_consen 339 EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---REK 414 (526)
T ss_dssp HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---HHH
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---hHH
Confidence 77777777663 556888999999999998764 57788888876 5667788999999999999775432 123
Q ss_pred HHHHHHhcCCC-CCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCC
Q 000156 759 LIDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSV 837 (2015)
Q Consensus 759 li~~l~~~gL~-~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~ 837 (2015)
++..+... +. -.++.++.+++.++|+....... .+ ..+.++..+..
T Consensus 415 ~l~~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~-----~~-~~~~~~~~l~~-------------------------- 461 (526)
T PF01602_consen 415 ILKKLIEL-LEDISSPEALAAAIWILGEYGELIEN-----TE-SAPDILRSLIE-------------------------- 461 (526)
T ss_dssp HHHHHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT-----TT-HHHHHHHHHHH--------------------------
T ss_pred HHHHHHHH-HHHhhHHHHHHHHHhhhcccCCcccc-----cc-cHHHHHHHHHH--------------------------
Confidence 44444433 44 36788999999999987655543 00 11222222222
Q ss_pred CCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhccc--cchHHHHHH
Q 000156 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLY--DSNKNLVMA 914 (2015)
Q Consensus 838 ~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~-~~~~eL~~~L~~rL~--DsN~~V~~~ 914 (2015)
...+.+-.+|...+..+.++... ... ...+++...+..... +.|..|+..
T Consensus 462 -----------------------~~~~~~~~vk~~ilt~~~Kl~~~----~~~~~~~~~i~~~~~~~~~~~s~~~evr~R 514 (526)
T PF01602_consen 462 -----------------------NFIEESPEVKLQILTALAKLFKR----NPENEVQNEILQFLLSLATEDSSDPEVRDR 514 (526)
T ss_dssp -----------------------HHTTSHHHHHHHHHHHHHHHHHH----SCSTTHHHHHHHHHHCHHHHS-SSHHHHHH
T ss_pred -----------------------hhccccHHHHHHHHHHHHHHHhh----CCchhhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 22233345677778888877752 222 122477777777776 779999999
Q ss_pred HHHHHHHHH
Q 000156 915 TLITLGAVA 923 (2015)
Q Consensus 915 Al~~l~~La 923 (2015)
|...+..+-
T Consensus 515 a~~y~~ll~ 523 (526)
T PF01602_consen 515 AREYLRLLN 523 (526)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 998887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00011 Score=97.36 Aligned_cols=501 Identities=17% Similarity=0.189 Sum_probs=279.8
Q ss_pred hhhccC--ChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHH
Q 000156 292 EGVKAT--KWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (2015)
Q Consensus 292 ~~l~s~--kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (2015)
+.+++. +-.+|++++..|..+. .+.. ...++..+.+.+...+..+...+--.+..+.. .=...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~l~kli~~~~~G~~-----~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~----~~~~~~~l~~ 81 (526)
T PF01602_consen 11 KILNSFKIDISKKKEALKKLIYLMMLGYD-----ISFLFMEVIKLISSKDLELKRLGYLYLSLYLH----EDPELLILII 81 (526)
T ss_dssp HHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT----TSHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCC-----CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh----cchhHHHHHH
Confidence 334455 7778999999887754 3432 22344455556666676665544444433332 1123577899
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-HH
Q 000156 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YV 447 (2015)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~ 447 (2015)
..+.+-+.++++.+|..|-.++..+... .-.+.+++.|...+.|++|.||..++..+.+++...+. . ++. ++
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~----~~~~~~ 154 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-L----VEDELI 154 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-C----HHGGHH
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-H----HHHHHH
Confidence 9999999999999999888888877532 33466788888999999999999999999998876433 2 233 79
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCC
Q 000156 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE 527 (2015)
Q Consensus 448 p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 527 (2015)
+.+.+++.|.++.|+.+|..++..+ +. .++....++..+- ..+...+.. +.+-.+
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i-~~-~~~~~~~~~~~~~----~~L~~~l~~---------~~~~~q---------- 209 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEI-KC-NDDSYKSLIPKLI----RILCQLLSD---------PDPWLQ---------- 209 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHH-HC-THHHHTTHHHHHH----HHHHHHHTC---------CSHHHH----------
T ss_pred HHHhhhccCCcchhHHHHHHHHHHH-cc-CcchhhhhHHHHH----HHhhhcccc---------cchHHH----------
Confidence 9999999999999999999999888 21 1111111222211 122222210 000000
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHH
Q 000156 528 ASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607 (2015)
Q Consensus 528 ~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~ 607 (2015)
-..-..+..- .....++... ..+-+.+.
T Consensus 210 --------~~il~~l~~~-----------------------------------------~~~~~~~~~~---~~~i~~l~ 237 (526)
T PF01602_consen 210 --------IKILRLLRRY-----------------------------------------APMEPEDADK---NRIIEPLL 237 (526)
T ss_dssp --------HHHHHHHTTS-----------------------------------------TSSSHHHHHH---HHHHHHHH
T ss_pred --------HHHHHHHHhc-----------------------------------------ccCChhhhhH---HHHHHHHH
Confidence 0000000000 0001111100 11224566
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 000156 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLL 687 (2015)
Q Consensus 608 ~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~ 687 (2015)
..+.+.++..+.+++..+..+.....-.....+.+.+++. +++..+.-.+|+.+..++...+.... . ..+.-
T Consensus 238 ~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~v~-~-~~~~~ 309 (526)
T PF01602_consen 238 NLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPAVF-N-QSLIL 309 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHHHG-T-HHHHH
T ss_pred HHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchhhh-h-hhhhh
Confidence 7777888888888888777443322111122344555543 33334556677777766654311111 0 11111
Q ss_pred HHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcC
Q 000156 688 GISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTG 767 (2015)
Q Consensus 688 ~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~g 767 (2015)
..+..-.|.-+|..+.++|..++.......++..+.+.+....++.++.+++..+..+...|.. +...+++.+.++
T Consensus 310 ~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---~~~~~v~~l~~l- 385 (526)
T PF01602_consen 310 FFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---DAEWYVDTLLKL- 385 (526)
T ss_dssp HHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS---SHHHHHHHHHHH-
T ss_pred heecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc---hHHHHHHHHHHh-
Confidence 1222223445677777777777777666677777777764444666777777777777766632 223344444443
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCC
Q 000156 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR 847 (2015)
Q Consensus 768 L~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr 847 (2015)
+...+..|...+
T Consensus 386 l~~~~~~~~~~~-------------------------------------------------------------------- 397 (526)
T PF01602_consen 386 LEISGDYVSNEI-------------------------------------------------------------------- 397 (526)
T ss_dssp HHCTGGGCHCHH--------------------------------------------------------------------
T ss_pred hhhccccccchH--------------------------------------------------------------------
Confidence 333333333322
Q ss_pred cccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHHHHh
Q 000156 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAM 926 (2015)
Q Consensus 848 vdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~D-sN~~V~~~Al~~l~~La~al 926 (2015)
+..+..++.. .+.....++..|...+.+ .+..+...++-++|+.+...
T Consensus 398 --------------------------~~~i~~ll~~-----~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~ 446 (526)
T PF01602_consen 398 --------------------------INVIRDLLSN-----NPELREKILKKLIELLEDISSPEALAAAIWILGEYGELI 446 (526)
T ss_dssp --------------------------HHHHHHHHHH-----STTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHH
T ss_pred --------------------------HHHHHHHhhc-----ChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcc
Confidence 2233333321 011112223333333322 23445667777777777666
Q ss_pred ChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000156 927 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (2015)
Q Consensus 927 g~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~----~ll~~l~~~L~~~k~~p~~R~~~l~~L~ 998 (2015)
.. .. ....++..+.+.+.+....|+..+..++..+....+-. .+++.+......+..++++|..+..++.
T Consensus 447 ~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 447 EN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp TT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred cc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 54 11 56678888888889888899999999999999887632 4555555555511226888887777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-05 Score=101.65 Aligned_cols=372 Identities=16% Similarity=0.107 Sum_probs=245.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhhChh-----HHHHHHHHH
Q 000156 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG-----FIFERLYKI 725 (2015)
Q Consensus 653 ~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~--K~r~~a~~~L~~l~e~~~~~-----~Vl~~L~~~ 725 (2015)
.|.+..|...+-+-+..++...++ ......+++.++.-.-|. -+|..|.+.+..+.+.+..+ .+.+.++..
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~ 324 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQA 324 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH
Confidence 456666666555555544443222 223345566666666664 48999999999999887766 455555555
Q ss_pred hhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHH--hhhhhccH
Q 000156 726 MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK--GFLADVKP 803 (2015)
Q Consensus 726 l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~--~~L~~lkp 803 (2015)
.+.++++++.-...+...+...||.+... ..+...+..+ +++.-..+|.++..-...+..+...+-. ...+.+-|
T Consensus 325 -~~d~~~~v~~~~~~~~~~L~~~~~~~~~~-~~~~~~~~~l-~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp 401 (759)
T KOG0211|consen 325 -VEDGSWRVSYMVADKFSELSSAVGPSATR-TQLVPPVSNL-LKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILP 401 (759)
T ss_pred -hcChhHHHHHHHhhhhhhHHHHhccccCc-ccchhhHHHH-hcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhH
Confidence 37899999999999999999999984322 2334444445 7888889999988888887776653211 11233334
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHh
Q 000156 804 ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE 883 (2015)
Q Consensus 804 ~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~ 883 (2015)
.+...+.+.-..+ |+... +...+....+|...-...+.+.++..+.|..-.+|....+.+..+..
T Consensus 402 ~~~~lv~d~~~~v------------r~a~a--~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~- 466 (759)
T KOG0211|consen 402 EVQVLVLDNALHV------------RSALA--SVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE- 466 (759)
T ss_pred HHHHHHhcccchH------------HHHHh--ccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHh-
Confidence 4444443321111 11000 00011122334333344466778888999999999998876644433
Q ss_pred ccccCCCCC-hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000156 884 ANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (2015)
Q Consensus 884 a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~ 962 (2015)
.+.-+.... -..+++++..+-.|.++.++...+..+..++.-.|..|.. ..+.+.+..-+-|....+|.+|...+..
T Consensus 467 v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~--~~~~~l~~~~l~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 467 VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD--EKLAELLRTWLPDHVYSIREAAARNLPA 544 (759)
T ss_pred ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh--HHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence 222222211 2457788888889999999999999999999999955432 2255666677888999999999999999
Q ss_pred HHHhcCc----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHH
Q 000156 963 WLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1038 (2015)
Q Consensus 963 i~~~~gl----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~ 1038 (2015)
++...|. ..+++.+.....+. +--.|..++.-+....+-.+..-....+++++.....|..++||-++.+.|..
T Consensus 545 l~~~~G~~w~~~~~i~k~L~~~~q~--~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 545 LVETFGSEWARLEEIPKLLAMDLQD--NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPK 622 (759)
T ss_pred HHHHhCcchhHHHhhHHHHHHhcCc--ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence 9999982 34455555555444 34678888877776555555433345667778888999999999999999988
Q ss_pred HHHHcChhHH
Q 000156 1039 ILRAGGQETI 1048 (2015)
Q Consensus 1039 l~~~~G~~~~ 1048 (2015)
++..+-....
T Consensus 623 i~~~L~~~~~ 632 (759)
T KOG0211|consen 623 ILKLLDESVR 632 (759)
T ss_pred HHhhcchHHH
Confidence 8777766443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-06 Score=118.97 Aligned_cols=242 Identities=20% Similarity=0.199 Sum_probs=169.8
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhC--hhHH
Q 000156 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (2015)
Q Consensus 718 Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G--~~l~ 795 (2015)
.++.|+..+ .+.+|.||..++.+|... |. ...++.+..+ |.|.++.||.+|...|+.+-.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 456666665 799999999999998764 32 3466777777 999999999999999987733222 1223
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHH
Q 000156 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (2015)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale 875 (2015)
..|.+-.|.+....-..+..+.. . -+..|+..+.|+++.+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~---------------------------------~-~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRA---------------------------------G-DAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcc---------------------------------C-CHHHHHHHhcCCCHHHHHHHHH
Confidence 33333222222222222211100 0 0235677899999999999999
Q ss_pred HHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHH
Q 000156 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (2015)
Q Consensus 876 ~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~a 955 (2015)
.|..+- . ...|...+.|.+..|+..++..|+.+...- ...++.++..++|..+.||.+
T Consensus 737 aL~~~~--------~------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD--------D------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc--------C------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHH
Confidence 887531 1 134567799999999999999888765321 122677889999999999999
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHH
Q 000156 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (2015)
Q Consensus 956 a~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~ 1035 (2015)
|..+|..+.. ...+.+.+..+|.++ ++.+|..++..|... + ....+.+|..+|.|++++||.+|..+
T Consensus 795 A~~aLg~~g~---~~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l----~----~~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGC---PPDDVAAATAALRAS--AWQVRQGAARALAGA----A----ADVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCC---cchhHHHHHHHhcCC--ChHHHHHHHHHHHhc----c----ccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999977632 133456688889877 589999999888642 1 13455779999999999999999999
Q ss_pred HHHH
Q 000156 1036 IVEI 1039 (2015)
Q Consensus 1036 L~~l 1039 (2015)
|..+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9875
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-06 Score=102.64 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=107.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
.+...+.|++|.+|..++..|..+ . + .+.+..|...|.|.+..|+..|+..|+.+. ...+.
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~--------~--~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~--------~~~~~ 192 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVI--------N--D-EAAIPLLINLLKDPNGDVRNWAAFALNSNK--------YDNPD 192 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhcc--------C--C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------CCCHH
Confidence 455667888999999888888532 1 1 567888888889999999999888888761 12346
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHH
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (2015)
.++.|+..|.|.+..||..|..+|.. ++-...+|.|...|+++ .+|..++.-|.+ ++. ...++.
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~~----~~~~~a~~ALg~----ig~----~~a~p~ 256 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKKG----TVGDLIIEAAGE----LGD----KTLLPV 256 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcCC----chHHHHHHHHHh----cCC----HhHHHH
Confidence 77888889999999999998888866 45567888888888865 256665555543 222 356666
Q ss_pred HHhhcC-CCChHHHHHHHHHHH
Q 000156 1017 ASIAMT-DKSSDVRKAAEACIV 1037 (2015)
Q Consensus 1017 l~~~L~-D~~~~VR~aA~~~L~ 1037 (2015)
+...++ +.+..||..|.+++.
T Consensus 257 L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 257 LDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHhhCCChhHHHHHHHHHh
Confidence 777775 888899988887764
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00085 Score=82.58 Aligned_cols=467 Identities=14% Similarity=0.161 Sum_probs=265.2
Q ss_pred HHhcccCHHHHHHHHHHHHHHHHH-----hh-----------hcch-hhhHhHHHHHHHHhccCc-------HHHHHHHH
Q 000156 332 KLITDVNIAVAVEAIQAIGNLARG-----LR-----------THFS-GSSRFLLPVLLEKLKEKK-------PTVAESLT 387 (2015)
Q Consensus 332 k~l~D~N~~V~~~A~~~l~~La~~-----L~-----------~~f~-~~~~~llp~LL~klkdkk-------~~V~~aa~ 387 (2015)
..++..|-.|...|...-..++.. +- ..|. ..+..++|.||..+-... =++.-++.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 345688888887776666555531 11 1233 225679999999884422 24777888
Q ss_pred HHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHH
Q 000156 388 QTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (2015)
Q Consensus 388 ~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~ 466 (2015)
.||.-+... +-.-+..++..+-..+.+.+|.-|..+.-.++..+..-....+.+++++.+|.+...++|+.--|.+.+.
T Consensus 350 sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttA 429 (858)
T COG5215 350 SCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTA 429 (858)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHH
Confidence 999877766 1122345667777788899999999999999988887667777888999999999999999999999999
Q ss_pred HHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCC
Q 000156 467 SVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR 546 (2015)
Q Consensus 467 ~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~ 546 (2015)
.|++.+..++.+- ++|- ..|.....+-+....
T Consensus 430 wc~g~iad~va~~-i~p~-~Hl~~~vsa~liGl~---------------------------------------------- 461 (858)
T COG5215 430 WCFGAIADHVAMI-ISPC-GHLVLEVSASLIGLM---------------------------------------------- 461 (858)
T ss_pred HHHHHHHHHHHHh-cCcc-ccccHHHHHHHhhhh----------------------------------------------
Confidence 9999998887752 2211 011110000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHH
Q 000156 547 PVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLR 626 (2015)
Q Consensus 547 P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~ 626 (2015)
+-|..........+.+...+ ++ +..+..
T Consensus 462 --------------------------------D~p~~~~ncsw~~~nlv~h~----a~----------------a~~~~~ 489 (858)
T COG5215 462 --------------------------------DCPFRSINCSWRKENLVDHI----AK----------------AVREVE 489 (858)
T ss_pred --------------------------------ccchHHhhhHHHHHhHHHhh----hh----------------hhcccc
Confidence 00000000000000000000 00 000000
Q ss_pred HHHHhccccchHHHHHHHHHhcCC--CCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHH
Q 000156 627 QQVEAVQNLDQSVEILVRLVCMLP--GWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMK 704 (2015)
Q Consensus 627 ~~v~~~~~~~~~~~~Lv~~L~~~p--g~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~ 704 (2015)
.........|+..|.+.- ..+|+| .+...+++|..++..+++-.......+...+.+|++.
T Consensus 490 ------S~l~~fY~ai~~~Lv~~t~~~~Ne~n--~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~--------- 552 (858)
T COG5215 490 ------SFLAKFYLAILNALVKGTELALNESN--LRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDE--------- 552 (858)
T ss_pred ------chhHHHHHHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH---------
Confidence 001111222333332111 145665 4566789999998877653333344444445555443
Q ss_pred HHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhh-HHHHHHhcCCCCCchhH-HHHHHHH
Q 000156 705 CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-LIDFCKDTGLQSSAAAT-RNATIKL 782 (2015)
Q Consensus 705 ~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~-li~~l~~~gL~~sn~~V-R~aA~~l 782 (2015)
++......+..+ .+ .---.+++--+..|..+|..++.+.-++.+ ++.++... ++.+++.+ -.-....
T Consensus 553 ~isv~~q~l~~e---D~-------~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~-les~~~t~~~~dV~~a 621 (858)
T COG5215 553 CISVLGQILATE---DQ-------LLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRI-LESTKPTTAFGDVYTA 621 (858)
T ss_pred HHHHhhhhhhhH---HH-------HHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-HhccCCchhhhHHHHH
Confidence 222211111110 00 001234556677888899999986545554 77777666 77776543 2233344
Q ss_pred HHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhc
Q 000156 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 862 (2015)
Q Consensus 783 l~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l 862 (2015)
++.|...+|..|..|+..+.|-+.+ .+
T Consensus 622 Isal~~sl~e~Fe~y~~~fiPyl~~-----------------------------------------------------al 648 (858)
T COG5215 622 ISALSTSLEERFEQYASKFIPYLTR-----------------------------------------------------AL 648 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH-----------------------------------------------------Hh
Confidence 4444444444444444444443333 33
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccc--hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHH
Q 000156 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2015)
Q Consensus 863 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ 940 (2015)
...+..+-..++-.+..+.+.-+..+.+.- ..++..|.+.|+.+ ...+.-..|.+++.||.++|.+|.+|+..++--
T Consensus 649 n~~d~~v~~~avglvgdlantl~~df~~y~-d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L 727 (858)
T COG5215 649 NCTDRFVLNSAVGLVGDLANTLGTDFNIYA-DVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMML 727 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444566666666654334444432 56788888888654 456777889999999999999999999888766
Q ss_pred HHHHhC-----C------CcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHH
Q 000156 941 ILKCLG-----D------NKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTAL 980 (2015)
Q Consensus 941 ll~~L~-----D------~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L 980 (2015)
+...-. | =...++.....+...+..... ++.++|++...+
T Consensus 728 ~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif 780 (858)
T COG5215 728 FQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIF 780 (858)
T ss_pred HHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHH
Confidence 654332 1 112455555566666666655 778888765443
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00075 Score=90.65 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=64.5
Q ss_pred HHHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000156 371 LLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2015)
Q Consensus 371 LL~klkdkk~~-V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2015)
|-+.|...+.. .++++...+..+.. | .....++++++..+.+++..+|+-+..++.......+.. .-..+..
T Consensus 37 Lr~~L~s~~~~~kk~alKkvIa~mt~-G-~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-----alLaINt 109 (746)
T PTZ00429 37 LQNDLNGTDSYRKKAAVKRIIANMTM-G-RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-----ALLAVNT 109 (746)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHC-C-CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-----HHHHHHH
Confidence 33444443333 34444444443332 2 456788999999999999999999988888765533321 2345788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH
Q 000156 450 CMECLNDGTPEVRDAAFSVLAA 471 (2015)
Q Consensus 450 l~k~L~Ds~~~VR~aA~~al~~ 471 (2015)
+.+-+.|++|-||.-|.++|+.
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~ 131 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMC 131 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHc
Confidence 8999999999999999988854
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.016 Score=78.08 Aligned_cols=758 Identities=13% Similarity=0.093 Sum_probs=383.3
Q ss_pred hHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCc
Q 000156 128 VFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD 202 (2015)
Q Consensus 128 ~v~~~L~~~~~--~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~ 202 (2015)
..+..|.+.+. +-|-.++-.++.||..+|+..+.+. .+.+..+-.+..+.-|..+.||.+|...+..+-. |+.
T Consensus 93 ~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~--~p~ 170 (1176)
T KOG1248|consen 93 DTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLK--GPP 170 (1176)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHc--CCC
Confidence 34555555555 8888999999999999888877643 4567788888899999999999999888777653 221
Q ss_pred hhhHHHhhhChHH---HHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 000156 203 PVKTILFEKMRDT---MKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279 (2015)
Q Consensus 203 ~l~~~l~~~Lk~~---q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~v 279 (2015)
+.+ ....|+ ..++..+.+++.-++..-+-.+|+-.--+ |.+.-. |.
T Consensus 171 -~~~---~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~--------------------------~~~~~~-p~ 219 (1176)
T KOG1248|consen 171 -FAP---DAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLR--------------------------DVLSTF-PR 219 (1176)
T ss_pred -CCc---cccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH--------------------------HhhccC-CH
Confidence 100 111222 13344445544322111111111110000 000000 11
Q ss_pred cccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCC-CCCCChHHHHHHHHHHhcccCHHHHHHH-HHHHHH----H
Q 000156 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKR-IAPGDFTEVCRTLKKLITDVNIAVAVEA-IQAIGN----L 352 (2015)
Q Consensus 280 dIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~k-i~~~~y~~l~~~L~k~l~D~N~~V~~~A-~~~l~~----L 352 (2015)
.++..+. +.+..-.....--.+-++++.+..+-+ .+. +...-+..++.+|.++--+.|-.....+ +.++.. +
T Consensus 220 ~li~sl~-e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~l 298 (1176)
T KOG1248|consen 220 PLIKSLC-EVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDIL 298 (1176)
T ss_pred HHHHHHH-HHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHH
Confidence 1122233 344444566777788889999988763 333 2223345555555554433332222222 222222 1
Q ss_pred HHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-HhHHHH-HHHHhhcCChHHHHHHHHHHHHH
Q 000156 353 ARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-VDVVED-VKTSVKNKVPLVRSLTLNWVTFC 430 (2015)
Q Consensus 353 a~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l-~~il~~-l~~~L~~Knp~vR~~~l~~L~~~ 430 (2015)
+..-...--+....+++.++..+-.....+.+++.+++..+... |++. +.+-.. +...|.-|-..+=..+++.+..+
T Consensus 299 a~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~-sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~ 377 (1176)
T KOG1248|consen 299 ATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKE-SVTVIDALCSKQLHSLLDYKFHAVWRFILQILSAL 377 (1176)
T ss_pred HHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcc-cCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 21111111245667788888877788899999999999999987 6662 222233 33455667777778899999999
Q ss_pred HHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCC
Q 000156 431 IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATG 510 (2015)
Q Consensus 431 l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~ 510 (2015)
++.+++-. .+++-..+..|...=.+.+-.-+..--+|+|...+.+|.+.+-..++ |+- ..+.
T Consensus 378 fek~G~~s-~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lp---------Lnl---~~~s----- 439 (1176)
T KOG1248|consen 378 FEKCGELS-GPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILP---------LNL---HAES----- 439 (1176)
T ss_pred HHHhhhhc-CHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcc---------hhc---cccc-----
Confidence 98887632 12222222233322233444444466778888888888653322211 000 0000
Q ss_pred CCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC
Q 000156 511 TSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS 590 (2015)
Q Consensus 511 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s 590 (2015)
. . .+ + +..=|.- +- . +....++
T Consensus 440 ~-----~------------~~----R------sWLLPvL-----------R~-----~---------------i~~A~La 461 (1176)
T KOG1248|consen 440 L-----S------------FT----R------SWLLPVL-----------RD-----Y---------------IIGASLA 461 (1176)
T ss_pred c-----c------------cc----h------hHhHHHH-----------HH-----h---------------hccCcHH
Confidence 0 0 00 0 0000000 00 0 0000000
Q ss_pred --HHHHHHHhhccCcHHHHhhhccCCHHHHHH-----HHHHHHH----HHHhccc--cc--hHHHHHHHHHhcCCCCccc
Q 000156 591 --LEEIESRLGSLIPADTVGQLKSAVWKERLE-----AISSLRQ----QVEAVQN--LD--QSVEILVRLVCMLPGWSEK 655 (2015)
Q Consensus 591 --~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~-----a~e~L~~----~v~~~~~--~~--~~~~~Lv~~L~~~pg~~Ds 655 (2015)
.+.+- .+...|.++--+...+ -++.|.. .+.++.+ .+ ...-.+.+.+... + ..
T Consensus 462 ~F~~~iv---------pla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~a--l-~~ 529 (1176)
T KOG1248|consen 462 FFTEYIV---------PLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAA--L-LK 529 (1176)
T ss_pred HHHHHHH---------HHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHH--H-hc
Confidence 01111 1112222211111111 1111111 1111111 00 0011111111100 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHcC---------CCchhHHHHHHHHHHhhhcch-----h---hhHHHHHHHH-HHHhhhChhH
Q 000156 656 NVQVQQQVIEVINYLAATAT---------KFPKKCVVLCLLGISERVADI-----K---TRAHAMKCLT-TFSEAVGPGF 717 (2015)
Q Consensus 656 N~qV~~~~Le~l~~l~~~~~---------~~~~~~~~~il~~LveKlgD~-----K---~r~~a~~~L~-~l~e~~~~~~ 717 (2015)
+.-.....+..|..+++.+. .+..+.+...+|.++..-+.. + .+..-.+... .+.+..+.+
T Consensus 530 ~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~d- 608 (1176)
T KOG1248|consen 530 RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTD- 608 (1176)
T ss_pred chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHH-
Confidence 11233445556666666541 122344556677776554432 1 1222222222 233333322
Q ss_pred HHHHHHHHhh----h---CCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 000156 718 IFERLYKIMK----D---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFV 790 (2015)
Q Consensus 718 Vl~~L~~~l~----~---~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~ 790 (2015)
|...+...+. . .+.+......|+.+..+..-... -++..+....... ..++++.|+.-+..+|.++...
T Consensus 609 v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e--~~vs~l~~v~~~~-e~~~~~~vQkK~yrlL~~l~~~- 684 (1176)
T KOG1248|consen 609 VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTE--SQVSKLFTVDPEF-ENSSSTKVQKKAYRLLEELSSS- 684 (1176)
T ss_pred HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccc--hhHHHHHHhhHHh-hccccHHHHHHHHHHHHHHhcC-
Confidence 3333333321 1 12233333333333333321111 1233333344444 5566888999999988888755
Q ss_pred ChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHH
Q 000156 791 GPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 870 (2015)
Q Consensus 791 G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R 870 (2015)
+....+..+....+.+.+-+- +.+..--.|
T Consensus 685 -~s~~~~~~q~i~~I~n~L~ds-------------------------------------------------~qs~~~~~~ 714 (1176)
T KOG1248|consen 685 -PSGEGLVEQRIDDIFNSLLDS-------------------------------------------------FQSSSSPAQ 714 (1176)
T ss_pred -CchhhHHHHHHHHHHHHHHHH-------------------------------------------------HhccchHHH
Confidence 222222222222222222222 222223345
Q ss_pred HHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHH--H---hChhh-HHhhhHHHHHHHHH
Q 000156 871 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS--A---MGPAV-EKSSKGVLSDILKC 944 (2015)
Q Consensus 871 ~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~--a---lg~~f-~~~~~~llp~ll~~ 944 (2015)
...+..|..|+...+.....-....|..++... +|-|..-++.|..+|-.|+. . .|.+= ...+..+++.|...
T Consensus 715 ~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isag 793 (1176)
T KOG1248|consen 715 ASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAG 793 (1176)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhh
Confidence 556666666665322111111112233333333 88899999999988888872 1 12221 23556677777766
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCChhhhH
Q 000156 945 LGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLL 1014 (2015)
Q Consensus 945 L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~~~~~~ll 1014 (2015)
+......++.+-+-++..++...+ +..+++.+.-.|.+. +++++..+++++..++...+. .+....++
T Consensus 794 l~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL 871 (1176)
T KOG1248|consen 794 LVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHLEELL 871 (1176)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHH
Confidence 766677776666788888876542 455666777777765 589999999999988887765 24555566
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000156 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (2015)
Q Consensus 1015 ~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~ 1070 (2015)
+.++..+.|....+|.+....|..+++.+|.+.+..++. .....+...|.|.
T Consensus 872 ~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p----ee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 872 PSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP----EEDMKLLTNIRKR 923 (1176)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH----HHHHHHHHHHHHH
Confidence 668888899999999999999999999999999888764 4445555555553
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-05 Score=94.19 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=117.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 941 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~l 941 (2015)
+.|++|.+|..|+..|+.+... ...+ ...++..|...+.|.+..|+..++..++.+. ....++.|
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~~---~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L 164 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCKK---NPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLL 164 (280)
T ss_pred hcCCCHHHHHHHHHHHhccccc---cccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHH
Confidence 5888999999999999877431 1111 2456777888899999999999998886542 13578999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc
Q 000156 942 LKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (2015)
Q Consensus 942 l~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (2015)
+..|.|....||..|..+|+.+ ..+-...++.|...|.+. ++.+|.+++..|.+. .....+++|+..|
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~--------~~~~av~~Li~~L 232 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALR--------KDKRVLSVLIKEL 232 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHcc--------CChhHHHHHHHHH
Confidence 9999999999999999999988 334457888899999877 689999999998752 1256788899999
Q ss_pred CCCChHHHHHHHHHHHHH
Q 000156 1022 TDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 1022 ~D~~~~VR~aA~~~L~~l 1039 (2015)
+|.+ ||..|..+|+.+
T Consensus 233 ~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 233 KKGT--VGDLIIEAAGEL 248 (280)
T ss_pred cCCc--hHHHHHHHHHhc
Confidence 9866 788888787765
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00052 Score=92.10 Aligned_cols=358 Identities=12% Similarity=0.121 Sum_probs=227.5
Q ss_pred HHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHH
Q 000156 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (2015)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~ 684 (2015)
++.+.|.+.+-..|.+|+..+...+..+.+.....-.+++. +.-.|..+...+.-.+..+++. ....+-.
T Consensus 36 ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~------~~S~d~elKKLvYLYL~~ya~~----~pelalL 105 (746)
T PTZ00429 36 ELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKL------APSTDLELKKLVYLYVLSTARL----QPEKALL 105 (746)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHH------hCCCCHHHHHHHHHHHHHHccc----ChHHHHH
Confidence 45677788888899999999987776544332222223333 2344666666665555554432 2334556
Q ss_pred HHHHHHhhhcc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHH
Q 000156 685 CLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF 762 (2015)
Q Consensus 685 il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~ 762 (2015)
+++.+..-+.| +-+|..|..+|..+....-.++++..+.+.+ .+++|-||..++.++.++..... +.+....+++.
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~ 183 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKD 183 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHH
Confidence 67777776766 3578888777776554433445555556664 78999999999999999876544 22333457788
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCC
Q 000156 763 CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (2015)
Q Consensus 763 l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~ 842 (2015)
+.++ +.++|+.|..+|+.+|.++...-+..+. -..+.+.
T Consensus 184 L~~L-L~D~dp~Vv~nAl~aL~eI~~~~~~~l~----l~~~~~~------------------------------------ 222 (746)
T PTZ00429 184 LVEL-LNDNNPVVASNAAAIVCEVNDYGSEKIE----SSNEWVN------------------------------------ 222 (746)
T ss_pred HHHH-hcCCCccHHHHHHHHHHHHHHhCchhhH----HHHHHHH------------------------------------
Confidence 8888 9999999999999999988654432221 0111111
Q ss_pred CCCCCcccccccchHHHHhcCC-CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHH
Q 000156 843 DGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 921 (2015)
Q Consensus 843 d~lprvdIs~~L~~~ll~~l~d-~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~ 921 (2015)
.++..+.+ ..|- +.. +-+++....+ -......+++..+..+|.-+|..|+..|++++-.
T Consensus 223 --------------~Ll~~L~e~~EW~-Qi~----IL~lL~~y~P-~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~ 282 (746)
T PTZ00429 223 --------------RLVYHLPECNEWG-QLY----ILELLAAQRP-SDKESAETLLTRVLPRMSHQNPAVVMGAIKVVAN 282 (746)
T ss_pred --------------HHHHHhhcCChHH-HHH----HHHHHHhcCC-CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 12222222 1342 111 2222221111 0111235678888888988999999999999888
Q ss_pred HHHHhChhh-HHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHH---HhcCCCChhHHHHHHHHH
Q 000156 922 VASAMGPAV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA---LTDAKLGAEGRKDLFDWL 997 (2015)
Q Consensus 922 La~alg~~f-~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~---L~~~k~~p~~R~~~l~~L 997 (2015)
+...+.+.. ......+.++++.. ..+.+.++-.+...|..++...+ ..+.+.+-.. ..++ ..+|...++.|
T Consensus 283 l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~Ff~~~~Dp---~yIK~~KLeIL 357 (746)
T PTZ00429 283 LASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDSFYVRYSDP---PFVKLEKLRLL 357 (746)
T ss_pred hcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHhhhcccCCc---HHHHHHHHHHH
Confidence 876654332 33344455666655 45678899999999988887653 2233332222 2233 46788888888
Q ss_pred HHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000156 998 SKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2015)
Q Consensus 998 ~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G 1044 (2015)
..... ...+..++.-|.....|.+.++|..+..+++.+...+.
T Consensus 358 ~~Lan----e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 358 LKLVT----PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred HHHcC----cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh
Confidence 76543 33567777788888899999999999999998876654
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.3e-06 Score=94.03 Aligned_cols=180 Identities=17% Similarity=0.248 Sum_probs=145.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
..+..|++++|....+|+..+..+.. -++......+.+++-++.+-++..+..|...||-+++.|+..++..+.+.+..
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~-fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSE-FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999998876 34444444568888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC----CChhh
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAH 1012 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~----~~~~~ 1012 (2015)
++..|+..-.+.|..||+.|..+|.+++.+.....+++.|...+++. ++..|.....-........+.. ....+
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~--n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHS--NPRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh--chhhhhhhhccccccceeccccchhhHhHHH
Confidence 99999999999999999999999999999999999999999999876 5666655443333333333211 12234
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000156 1013 LLKPASIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 1013 ll~pl~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
++..+-.-+.|+-+.+|++|...+...
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~~ 275 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLEL 275 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHhH
Confidence 445566678899999999988666543
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.24 Score=66.65 Aligned_cols=596 Identities=15% Similarity=0.111 Sum_probs=302.6
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhc---CCC
Q 000156 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAG---CLN 400 (2015)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~al~~~~---~~~ 400 (2015)
.++..|...++|....|+..|++-++.++..+... .+..++..+++.|..-. ...--.+.-+|..+...| ...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 44556666778999999999999999999988743 46677777777664433 334445556666665543 234
Q ss_pred hHhHHHHHHHHhh-------c-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH-HHHhcCCCHHHHHHHHHHHHH
Q 000156 401 LVDVVEDVKTSVK-------N-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAA 471 (2015)
Q Consensus 401 l~~il~~l~~~L~-------~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l-~k~L~Ds~~~VR~aA~~al~~ 471 (2015)
+++++|.|..++. + .--.||-.++=++-.+.....+..+.+++..+.+.+ ..++-|..-++|.||..||-.
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 5688888887773 2 335788777766655555556666666666666655 567899999999999998875
Q ss_pred HHHHhCchHH-HHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCC
Q 000156 472 IAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550 (2015)
Q Consensus 472 l~~~~Ge~~~-~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~ 550 (2015)
.....|+-+. ..++...|-..-.....++
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy-------------------------------------------------- 527 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCY-------------------------------------------------- 527 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHH--------------------------------------------------
Confidence 5555444310 0111111110000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHH
Q 000156 551 APASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 630 (2015)
Q Consensus 551 ~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~ 630 (2015)
.+ -..+..+.+.....++.+.+..++.|=+-+.|..|...|.++..
T Consensus 528 -------------------------------~~---l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 528 -------------------------------LD---LCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred -------------------------------HH---HhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 00 00112233333334555556666888888899999999988543
Q ss_pred hccccchHHHHHHHHHhcCCCCcccHHH--HHHHHHHHHHHHHH---HcCCCchhHHHH---HHHHHHhhhcchhhhHHH
Q 000156 631 AVQNLDQSVEILVRLVCMLPGWSEKNVQ--VQQQVIEVINYLAA---TATKFPKKCVVL---CLLGISERVADIKTRAHA 702 (2015)
Q Consensus 631 ~~~~~~~~~~~Lv~~L~~~pg~~DsN~q--V~~~~Le~l~~l~~---~~~~~~~~~~~~---il~~LveKlgD~K~r~~a 702 (2015)
-..+. .....+++++... .-.|-+.. +...+=+++..+-. ....+...-+.. +++.+.++......+..-
T Consensus 574 ~~pk~-~a~~~L~~lld~~-ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lm 651 (1133)
T KOG1943|consen 574 TEPKY-LADYVLPPLLDST-LSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLM 651 (1133)
T ss_pred hhHHh-hcccchhhhhhhh-cCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHH
Confidence 31110 0012233333211 01222211 11111122221111 011111222222 456666655554433344
Q ss_pred HHHHHHHHhhhC-------hhHHHHHHHHHh---hhCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCCC
Q 000156 703 MKCLTTFSEAVG-------PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSS 771 (2015)
Q Consensus 703 ~~~L~~l~e~~~-------~~~Vl~~L~~~l---~~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~s 771 (2015)
..+...+.|.++ ++++.+..-..+ ..+.| .+|.++...+++++..|-...- ...++|......+-...
T Consensus 652 r~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~ 730 (1133)
T KOG1943|consen 652 RQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCS 730 (1133)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCch
Confidence 445555555443 234444322222 22344 6788888888888887643211 11134444333213444
Q ss_pred chhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccc
Q 000156 772 AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDIS 851 (2015)
Q Consensus 772 n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs 851 (2015)
+..+|..-+..++.+-..+ +... .++.+ .
T Consensus 731 ~~~~r~g~~lal~~lp~~~---i~~~-------~q~~l----c------------------------------------- 759 (1133)
T KOG1943|consen 731 EERIRRGLILALGVLPSEL---IHRH-------LQEKL----C------------------------------------- 759 (1133)
T ss_pred HHHHHHHHHHHHccCcHHh---hchH-------HHHHH----H-------------------------------------
Confidence 6667776655554442111 1110 01111 0
Q ss_pred cccchHHHHhc-CCCChH-HHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--------ccchHHHHHHHHHHHHH
Q 000156 852 GKFTPTLVKSL-ESPDWK-VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--------YDSNKNLVMATLITLGA 921 (2015)
Q Consensus 852 ~~L~~~ll~~l-~d~~Wk-~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL--------~DsN~~V~~~Al~~l~~ 921 (2015)
..++... +|. |. .|...+..+..++........+..+.+++..|.+.| +|.-.-|+.+|++.+..
T Consensus 760 ----~~~l~~~p~d~-~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~ 834 (1133)
T KOG1943|consen 760 ----KLVLELLPSDA-WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSS 834 (1133)
T ss_pred ----HHHhccCcccc-cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHh
Confidence 1111111 122 53 377777777777653222233334455555555544 44556689999999988
Q ss_pred HHHHhC-h-hhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHH---HHHHh-cCCCChhHHHHHH
Q 000156 922 VASAMG-P-AVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYV---TTALT-DAKLGAEGRKDLF 994 (2015)
Q Consensus 922 La~alg-~-~f~~~-~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l---~~~L~-~~k~~p~~R~~~l 994 (2015)
+..-+. + -++.+ +..++..+++...|+-...|+.|..|+..++.+-.--..+|.+ .+.+- +...++..=...+
T Consensus 835 ~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~~~i~~~~~~~~L~ei~~~~~a~~~~~~~~~~ 914 (1133)
T KOG1943|consen 835 LLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVHSPSIPHFRHIEKLEEIFPRDYANVPWALPPTL 914 (1133)
T ss_pred hhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeecCCCCCcchHHHHHHhhcCcccccCCCcccchh
Confidence 876653 3 34443 5556667888888888888999999999988772111222221 11111 0000000000011
Q ss_pred HHHHHHhccCCCCCCh-hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhcc
Q 000156 995 DWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (2015)
Q Consensus 995 ~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~ 1071 (2015)
..+...+. ..+.+ .+.+..+...+..-....++.|.+++..+++ ++..+.+-.+..+..-...+.+.+-..+
T Consensus 915 f~L~~~Ll---~~~~y~~~v~lGl~vs~ggl~esl~k~a~q~l~e~~R--~~~~dp~t~~~~~stl~~~~~~~l~~er 987 (1133)
T KOG1943|consen 915 FPLNSSLL---ELPRYYEEVLLGLVVSLGGLTESLIKLAKQALLEYVR--DENSDPKTIGSRDSTLLQLIEEALLNER 987 (1133)
T ss_pred hhHHHHHH---hhHHHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHH--HhhcCcccccchHHHHHHHHHHHHHHHH
Confidence 11110110 01122 2333334444444445566777777777776 5544454455555555555665554433
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.1 Score=67.57 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHH
Q 000156 382 VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEV 461 (2015)
Q Consensus 382 V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~V 461 (2015)
.++|....+.-|+ + ......++|++.....+||+.||.-.--+|.+..+..+.-.+. =+..+.+.|.|+|+.+
T Consensus 52 KleAmKRIia~iA-~-G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-----SIntfQk~L~DpN~Li 124 (968)
T KOG1060|consen 52 KLEAMKRIIALIA-K-GKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-----SINTFQKALKDPNQLI 124 (968)
T ss_pred HHHHHHHHHHHHh-c-CCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-----eHHHHHhhhcCCcHHH
Confidence 4555544444444 4 2567899999999999999999999999999988765432221 1467889999999999
Q ss_pred HHHHHHHHHHH
Q 000156 462 RDAAFSVLAAI 472 (2015)
Q Consensus 462 R~aA~~al~~l 472 (2015)
|.-|..+|..+
T Consensus 125 RasALRvlSsI 135 (968)
T KOG1060|consen 125 RASALRVLSSI 135 (968)
T ss_pred HHHHHHHHHhc
Confidence 99999988644
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.12 Score=67.96 Aligned_cols=396 Identities=14% Similarity=0.144 Sum_probs=233.1
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhc
Q 000156 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 801 (2015)
Q Consensus 722 L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~l 801 (2015)
++..+ +..+......++..|..++..+....+ ...+.+++... |.|+++.||.-+.+.++.+-...+..+.
T Consensus 43 lf~~L-~~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~g-L~h~~~~Vr~l~l~~l~~~~~~~~~~~~------ 113 (503)
T PF10508_consen 43 LFDCL-NTSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQRG-LTHPSPKVRRLALKQLGRIARHSEGAAQ------ 113 (503)
T ss_pred HHHHH-hhcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCCHHHHH------
Confidence 44443 344667777888888888876654433 45677888874 9999999999998876544322111000
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHH
Q 000156 802 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL 881 (2015)
Q Consensus 802 kp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll 881 (2015)
-+ . ...+.+.++..+.+.+-.+.+.|+..|..+.
T Consensus 114 -------------~~-----------------------------~----~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 114 -------------LL-----------------------------V----DNELLPLIIQCLRDPDLSVAKAAIKALKKLA 147 (503)
T ss_pred -------------Hh-----------------------------c----CccHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 00 0 0113456778889999999999999999987
Q ss_pred HhccccCCCCCh-hhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHHHhCCCcHHHHHHHHH
Q 000156 882 EEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLT 958 (2015)
Q Consensus 882 ~~a~~~I~~~~~-~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~--llp~ll~~L~D~k~~Vr~aa~~ 958 (2015)
... ..+. ..| .++...|...+...|..++..++.++..++..-...+ .++.. +++.+++.|.+..-.++-.+.+
T Consensus 148 ~~~-~~~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 148 SHP-EGLE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred CCc-hhHH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 521 1110 111 2337777777777778888888888777765443333 44444 9999999999988899999999
Q ss_pred HHHHHHHhcC-c-----hhhHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhccCCC--CC----ChhhhHHHHHhhcCCCC
Q 000156 959 VLDAWLAAVH-L-----DKMVPYVTTALTDAKLGA-EGRKDLFDWLSKQLTGLSG--FP----DAAHLLKPASIAMTDKS 1025 (2015)
Q Consensus 959 aL~~i~~~~g-l-----~~ll~~l~~~L~~~k~~p-~~R~~~l~~L~~~l~~~~~--~~----~~~~ll~pl~~~L~D~~ 1025 (2015)
.+..++..-. . ..+++.|...+.+.+.+| ....-+.+.+ +.+..... .. .+..++..+..+++..+
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~-~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM-KFFGNLARVSPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999987432 1 235666777776544345 2222222222 12222111 11 22444445667788999
Q ss_pred hHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000156 1026 SDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 1104 (2015)
Q Consensus 1026 ~~VR~aA~~~L~~l~~~~-G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 1104 (2015)
...|..|..+++.+.... |...+ ..+-.+.-+..+..+....+.. +
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L---~~~~~~~~~~~l~~~~~~~~~~-----~------------------------- 350 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLL---LQKQGPAMKHVLKAIGDAIKSG-----S------------------------- 350 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHH---HhhcchHHHHHHHHHHHHhcCC-----c-------------------------
Confidence 999999999999876433 33333 1122222222222222111100 0
Q ss_pred cCCCCCCCCCCCCccccchhhhhhhhhcccCCCChHHHhh-hhhcc-c--cccCCChhHHHHHHHHHHhhhhH---H-HH
Q 000156 1105 SRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVRR-F--KFEDPRIEQIQELENDMMKYFRE---D-LH 1176 (2015)
Q Consensus 1105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~-~~~~k-~--~f~~p~~e~ve~L~~q~~~~~~~---~-l~ 1176 (2015)
-+-|.+ +..+. + ...+...+++-.+...+...++. . ++
T Consensus 351 ----------------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l 396 (503)
T PF10508_consen 351 ----------------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLL 396 (503)
T ss_pred ----------------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHH
Confidence 000000 00000 0 00111223332333333333322 1 44
Q ss_pred HhhcccCHHH-HHHHHHHHHHhcCcCh-hhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHH
Q 000156 1177 RRLLSTDFKK-QVDGLEMLQKALPSIR-KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (2015)
Q Consensus 1177 ~~lf~~D~k~-~~~al~~L~~~l~~~~-~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~ 1243 (2015)
-.+...+|-+ |++|+..|...+.+.- ...+.+.-=++.|++-|-.|++..+...-.+++..+.....
T Consensus 397 ~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 397 MSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 4445678765 8999999998877642 22344455689999999999999999999999998765544
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0061 Score=74.58 Aligned_cols=190 Identities=16% Similarity=0.098 Sum_probs=139.7
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcC---CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh--hcchhh
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLAST---KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~---~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~--~~f~~~ 363 (2015)
++.+.+.+++=+.|.++|..+..++.. +.+....+.+|+..+.+.++-....=...|+++++.++-.+| ..-+..
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 566778889999999999999886632 223335678899999999984444667789999999999887 444566
Q ss_pred hHhHHHHHHHHhccCcH--HHHHHHHHHHHHHHHhcCCChHh------HHHHHHHHh--h----------cCChHHHHHH
Q 000156 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSV--K----------NKVPLVRSLT 423 (2015)
Q Consensus 364 ~~~llp~LL~klkdkk~--~V~~aa~~aL~al~~~~~~~l~~------il~~l~~~L--~----------~Knp~vR~~~ 423 (2015)
...+.|.|..-+.|... .+|.++..||..+.-.++...+. +++.|+... + ..++.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 77888888888887643 46667766776544332333332 344333221 1 1236788888
Q ss_pred HHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 424 l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
+.--+.++...+...+...+...+|.+..+|+..+.+||-+|-++++.++....+
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8777777877777667777888999999999999999999999999999988764
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0043 Score=82.81 Aligned_cols=301 Identities=14% Similarity=0.201 Sum_probs=196.3
Q ss_pred HHHHhhhcc-CCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh--
Q 000156 604 ADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK-- 680 (2015)
Q Consensus 604 ~~l~~~L~s-~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~-- 680 (2015)
.-+..++++ +.-..|++|++.|...-.-.+.. ...+-++.++.. -|.|+..+|+..+++.|..++..-.++...
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de-~~LDRVlPY~v~--l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDE-VKLDRVLPYFVH--LLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH-HHHhhhHHHHHH--HhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 333444443 34567889998887665443321 235666777654 489999999999999999988765555432
Q ss_pred --HHHHHHHHHHhhhcch---hhhHHHHHHHHHHHhhhChhHHHHHHHH--HhhhCCChh----HH-HHHHHHHHHHHHH
Q 000156 681 --CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYK--IMKDHKNPK----VL-SEGILWMVSAVED 748 (2015)
Q Consensus 681 --~~~~il~~LveKlgD~---K~r~~a~~~L~~l~e~~~~~~Vl~~L~~--~l~~~KnpK----v~-~~~l~~L~~li~~ 748 (2015)
..+.++|.|-.-+.|. .+|-.-..+|-.+|+...-=..+.+.+. ++.+..|.. -. ..-++.|.
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~----- 576 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH----- 576 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-----
Confidence 2356777777666662 3566666666666653210001111111 111111111 00 00011111
Q ss_pred hCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccc
Q 000156 749 FGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (2015)
Q Consensus 749 fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~ 828 (2015)
..+-+.+..+ +.++.+.||.+-.+-++.|+.++|.. +
T Consensus 577 --------~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk~-----------------------k----------- 613 (1431)
T KOG1240|consen 577 --------HTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGKE-----------------------K----------- 613 (1431)
T ss_pred --------HHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhhc-----------------------c-----------
Confidence 1233345567 88888999999999999999988831 0
Q ss_pred cCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChh-hHHHHHHhccccc
Q 000156 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGGLRGRLYDS 907 (2015)
Q Consensus 829 r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~-eL~~~L~~rL~Ds 907 (2015)
+ + |+ |.+.++.-+.|++|.-|-.-.+.|-.+. -.+.+.... -|++.|.+-|.|.
T Consensus 614 -s-----------N------D~---iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 614 -S-----------N------DV---ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred -c-----------c------cc---hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCc
Confidence 0 1 11 5678888999999999998877776554 244443223 3677788899999
Q ss_pred hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHh
Q 000156 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALT 981 (2015)
Q Consensus 908 N~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----~~ll~~l~~~L~ 981 (2015)
...|+..||.++..|++. |--=++++..++..++-.|...+..||.++...+-++.++++- -.++|.|-+.|.
T Consensus 669 EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred chhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 999999999999988854 2222468888999999999999999999999999999988862 345666666665
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0095 Score=79.70 Aligned_cols=275 Identities=15% Similarity=0.080 Sum_probs=181.7
Q ss_pred hhhHHHHHHHHHHHhhhChhHHHHHHHHHh---hhCCChhHHHHHHHHHHHHHHHh---CCCC--CChhhHHHHHHhcCC
Q 000156 697 KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDF---GVSH--LKLKDLIDFCKDTGL 768 (2015)
Q Consensus 697 K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l---~~~KnpKv~~~~l~~L~~li~~f---G~~~--l~~k~li~~l~~~gL 768 (2015)
-.|-.|.+.|..++...+-+..+++++++. +.+..++||..++..|++++.-. .... +-+.-+++.+..+ +
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l-~ 516 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL-L 516 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh-h
Confidence 357778888888888777666666666643 46788999999999999998643 2221 1235577777777 7
Q ss_pred CC-CchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCC---CCCCCCcccccCccccCCCCCCCCCC
Q 000156 769 QS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF---EGTVVPKKTVRASESTSSVSSGGSDG 844 (2015)
Q Consensus 769 ~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~---~~~p~p~R~~r~~~~~~s~~~~~~d~ 844 (2015)
.+ ++..||-+-..+|..|.... ..|++ .-++.... ..+-..+.+ .+ ..+
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA----~rFle-----------~~q~~~~~g~~n~~nset~~--~~--------~~~-- 569 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTA----YRFLE-----------LTQELRQAGMLNDPNSETAP--EQ--------NYN-- 569 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHH----HHHHH-----------HHHHHHhcccccCccccccc--cc--------ccc--
Confidence 77 66779999999988886432 12221 11110000 000000000 00 000
Q ss_pred CCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 000156 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS 924 (2015)
Q Consensus 845 lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~ 924 (2015)
....++...+...+...+.|.+--+|..-|+.|..++. --.+.+.+ .-|+..|..-|+|..+.++..-.+.|..++-
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~-FFGk~ksN--D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi 646 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCV-FFGKEKSN--DVILSHLITFLNDKDWRLRGAFFDSIVGVSI 646 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH-Hhhhcccc--cchHHHHHHHhcCccHHHHHHHHhhccceEE
Confidence 00111111122234455788888889888888877774 11233333 3477888889999999999998888887777
Q ss_pred HhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----chhhHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000156 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSK 999 (2015)
Q Consensus 925 alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-----l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~ 999 (2015)
-.|.. ..-+.++|-+.+.|.|..+.|...|..|+..+++.-- +..++..+.+.|-++ |.-+|.+++.++..
T Consensus 647 ~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP--N~WIR~~~~~iI~~ 722 (1431)
T KOG1240|consen 647 FVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP--NLWIRRAVLGIIAA 722 (1431)
T ss_pred EEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc--hHHHHHHHHHHHHH
Confidence 77765 2234578999999999999999999999999997643 345666777888888 57899999999988
Q ss_pred HhccCCC
Q 000156 1000 QLTGLSG 1006 (2015)
Q Consensus 1000 ~l~~~~~ 1006 (2015)
....+..
T Consensus 723 ~~~~ls~ 729 (1431)
T KOG1240|consen 723 IARQLSA 729 (1431)
T ss_pred HHhhhhh
Confidence 7776654
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.037 Score=70.19 Aligned_cols=336 Identities=13% Similarity=0.092 Sum_probs=160.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhh-----hChhHHHHHHHHH
Q 000156 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEA-----VGPGFIFERLYKI 725 (2015)
Q Consensus 653 ~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~~~L~~l~e~-----~~~~~Vl~~L~~~ 725 (2015)
.+.+.+|+...++.+............ ....+...-.-...+ ..++-.+......++-. ...+.++..+...
T Consensus 128 ~e~~~~vLa~~~~~l~~~g~~~~~~~~-~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~ 206 (823)
T KOG2259|consen 128 AECSDHVLAQYLDNLLAIGCPVCEEDI-YILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYL 206 (823)
T ss_pred ccchhHHHHHHHHHHHHhccCCCchhh-HHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHH
Confidence 577888888888877655543211110 001111111111111 12233333322222211 1133445544444
Q ss_pred hhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHH
Q 000156 726 MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPAL 805 (2015)
Q Consensus 726 l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~l 805 (2015)
.....++||..+++.|-++-+.|... +.+-....++ +.|.+..||.+|++++...-.........+-+ -
T Consensus 207 -~~~~D~~Vrt~A~eglL~L~eg~kL~----~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~-----e 275 (823)
T KOG2259|consen 207 -EHDQDFRVRTHAVEGLLALSEGFKLS----KACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLERESE-----E 275 (823)
T ss_pred -hcCCCcchHHHHHHHHHhhccccccc----HHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCcccchhh-----h
Confidence 47789999999999988777633221 3455666777 99999999999999987665444211111111 1
Q ss_pred HHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCC-------ChHHHHHHHHHHH
Q 000156 806 LSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-------DWKVRLESIEAVN 878 (2015)
Q Consensus 806 l~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~-------~Wk~R~eale~L~ 878 (2015)
.+..++-|.++..-.... .=.+|....+ .+ ....+...+++.+.-|+ -|+.-.+.-+.+.
T Consensus 276 ~kl~D~aF~~vC~~v~D~-sl~VRV~AaK---------~l---G~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~ 342 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDR-SLSVRVEAAK---------AL---GEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALY 342 (823)
T ss_pred hhhHHHHHHHHHHHHhcC-ceeeeehHHH---------Hh---chHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHH
Confidence 223344444332100000 0011111100 00 00111122332221111 2332222211111
Q ss_pred HHHH-hccccCC---CC---Ch-------hhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHH
Q 000156 879 KILE-EANKRIQ---PA---GT-------GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2015)
Q Consensus 879 ~ll~-~a~~~I~---~~---~~-------~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~ 944 (2015)
.=-+ ..+++.. |+ +- .--..+|..-|.|.=-.|+..|...+..|+..- ++| ...-+--++..
T Consensus 343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~F---A~~aldfLvDM 418 (823)
T KOG2259|consen 343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGF---AVRALDFLVDM 418 (823)
T ss_pred hcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCc---HHHHHHHHHHH
Confidence 0000 0001110 00 00 011355666667777777777777777776432 333 33455566677
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc
Q 000156 945 LGDNKKHMRECTLTVLDAWLAAVHL-DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (2015)
Q Consensus 945 L~D~k~~Vr~aa~~aL~~i~~~~gl-~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (2015)
|+|--..||--|+.+|..+..++.+ +..++.+...|.+. ++++|.++.+.|.. ........+...+..++++|
T Consensus 419 fNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~--~~~~d~~~i~m~v~~lL~~L 492 (823)
T KOG2259|consen 419 FNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDR--SVDVREALRELLKN--ARVSDLECIDMCVAHLLKNL 492 (823)
T ss_pred hccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhc--CHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHh
Confidence 7777778888888888887777665 44677777777765 46777777766642 22222223333344455555
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.25 Score=65.07 Aligned_cols=185 Identities=20% Similarity=0.265 Sum_probs=111.6
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCC----CC-CCChHHHHHHHHHHhccc--CHHHHHHHHHHHHHHHHHhhhcchhh
Q 000156 291 WEGVKATKWSERKDAVAELTKLASTKR----IA-PGDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLRTHFSGS 363 (2015)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~~k----i~-~~~y~~l~~~L~k~l~D~--N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (2015)
...+.+.+--.|..+++.|..++..+. +. .+-+..|+..|...-.|+ +....-..++..+.++..-...+-..
T Consensus 208 l~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~ 287 (503)
T PF10508_consen 208 LKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL 287 (503)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH
Confidence 333455555567777777777764322 11 122334444444433354 44444455677777776522333333
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cC--------CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000156 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GC--------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (2015)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~~--------~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~ 433 (2015)
.+.++..++..+....+..+..|.+|+..+..+ |. ..+..++..+.....+....+|..+++.++.++..
T Consensus 288 ~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 288 YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 456666667777778888999999999888654 10 01122334444444556678999999999999765
Q ss_pred cCh---hHHHHhh---------hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 434 SSK---AAVLKVH---------KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 434 ~~~---~~l~~~l---------~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
... ..+.... +.....++..+.-+.|++|-+|...+.++..+
T Consensus 368 ~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 368 GTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 432 1111111 11111788888999999999999999988755
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.055 Score=68.84 Aligned_cols=180 Identities=16% Similarity=0.125 Sum_probs=125.2
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhh
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~k---i~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~ 364 (2015)
....++.+.+-..+..+...++++.+..+ +...--..+++.|...+. +.+..+..+|+-+|..+|.|-...-..++
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 45566778888889999999999885333 322112246667777776 88899999999999999998765544333
Q ss_pred -HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh------HHHHHHHHhhcCCh-HHHHHHHHHHHHHHHhcCh
Q 000156 365 -RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKVP-LVRSLTLNWVTFCIETSSK 436 (2015)
Q Consensus 365 -~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~------il~~l~~~L~~Knp-~vR~~~l~~L~~~l~~~~~ 436 (2015)
...+|.++..+......|++.+.-||..+... +..+.+ +++.++..+....+ .....+...|..+.....+
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 36788899999999999999999999999876 333333 34566666665554 3333444444444444323
Q ss_pred hHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000156 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (2015)
Q Consensus 437 ~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al 469 (2015)
..-...+..++|+|..++.+.|++|..-|+-++
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAl 261 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWAL 261 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222245688999999999999999975444444
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=1.8 Score=58.88 Aligned_cols=374 Identities=17% Similarity=0.122 Sum_probs=194.2
Q ss_pred HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhc-cCCCC
Q 000156 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT-GLSGF 1007 (2015)
Q Consensus 932 ~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~-~~~~~ 1007 (2015)
.+++.++-.++..+.|+...||=+|...+..+...++ .+.++..+.+.+.-.. .+..=.+.+-.|++... .+-..
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e-~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAE-DDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCC-chhHHHHHHHHHHHHHhcCCcch
Confidence 5778899999999999999999999999999999987 2555665555433110 12222456666665322 11112
Q ss_pred CChhhhHHHHHhhc--CCC------ChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCC-CCCC
Q 000156 1008 PDAAHLLKPASIAM--TDK------SSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ-VSMG 1078 (2015)
Q Consensus 1008 ~~~~~ll~pl~~~L--~D~------~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~-~~~~ 1078 (2015)
.-+.++++.|.+.| +++ -..||.+|...+++|.+..-...|.+++.+|-+.-. +.+..++.-.-- ++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL--~~AlFDrevncRRAA-- 491 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALL--IVALFDREVNCRRAA-- 491 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHH--HHHhcCchhhHhHHH--
Confidence 22334444466655 332 357999999999999999999888887766644321 222222210000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhh-hhhcccCCCChHHHhhhhhccccccCCCh
Q 000156 1079 PTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQS-QALLNVKDSNKEDRERMVVRRFKFEDPRI 1157 (2015)
Q Consensus 1079 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~R~~~~~~k~~f~~p~~ 1157 (2015)
.++ --.-+++.+ ..| .+.+.-+ .-.+.+.+-.+--+ .+ .
T Consensus 492 ---sAA------lqE~VGR~~-------------n~p------~Gi~Lis~~dy~sV~~rsNcy~----~l--------~ 531 (1133)
T KOG1943|consen 492 ---SAA------LQENVGRQG-------------NFP------HGISLISTIDYFSVTNRSNCYL----DL--------C 531 (1133)
T ss_pred ---HHH------HHHHhccCC-------------CCC------CchhhhhhcchhhhhhhhhHHH----HH--------h
Confidence 000 000011111 010 0000000 00011110000000 00 0
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCcChhhHH-HHHHHHHHHHHHhhcCcchHHHHHHHhhHH
Q 000156 1158 EQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-EVLDILLRWFVLQFCKSNTTCLLKVLEFLP 1236 (2015)
Q Consensus 1158 e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~i-~~lDlllk~~~lr~~dtN~~vl~k~Le~l~ 1236 (2015)
..+++...-...+|..-+...++|=|-+-|-.+-..|.+.-...++.+. -++--+++++...=.+.-.-+...+=+++.
T Consensus 532 ~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 532 VSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 1111222222345667777778888888777766677764333334333 234444554311111111123333333333
Q ss_pred HHHHHHHhcC--C-CCCHHHHHh---hhhHHHHhhcCCh--HHHHHHHHHHHHHHhhccCc-------cccHHHHHhhhc
Q 000156 1237 ELFDTLRDEG--Y-SLTESEAAV---FLPCLVEKSGHNI--EKVREKMRELTKQIVNFYSA-------TKTLPYILEGLR 1301 (2015)
Q Consensus 1237 ~l~~~l~~~~--y-~l~~~Ea~~---~lP~L~~K~Gd~k--~~vr~~v~~il~~i~~vy~~-------skvf~~l~~gl~ 1301 (2015)
.+.... + .+.+++... ++|.+..+-=..+ +.+|..+-..++++...-+. ++.-..|.+.+.
T Consensus 612 ----~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~ 687 (1133)
T KOG1943|consen 612 ----ALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLT 687 (1133)
T ss_pred ----HhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhc
Confidence 233332 2 255666666 4888877764543 78888888888777654332 223333445554
Q ss_pred CCChhhHHHHHHHHHHHHHhhCCCcccccchH--HHHHHhhccCChHHHHHHHHHH
Q 000156 1302 SKNNRTRIECVDLVGFLIDHHGAEISGQLKSL--QIVASLTAERDGEIRKAALNTL 1355 (2015)
Q Consensus 1302 sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l--~~ia~~i~drd~~VR~AAl~~l 1355 (2015)
..| -.|.+....++.++..|-+...+..-.+ ..|+.+.+..+..+|..-.-++
T Consensus 688 ~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal 742 (1133)
T KOG1943|consen 688 LPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILAL 742 (1133)
T ss_pred chH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 555 7799999999999999976543222222 5555555555555554433333
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0013 Score=65.90 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCC
Q 000156 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN 948 (2015)
Q Consensus 869 ~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~ 948 (2015)
.|+.||-.|..+.....+.+... +.+|++.+...+.|.++.|+..||+.+..|++..+..+-+|...++..+.+.+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 48889999988876443444433 58899999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 000156 949 KKHMRECTLTVLDAW 963 (2015)
Q Consensus 949 k~~Vr~aa~~aL~~i 963 (2015)
++.||.+| +.|+.+
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99999998 444443
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.002 Score=64.69 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc
Q 000156 301 ERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (2015)
Q Consensus 301 eR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (2015)
.|+.+|..|.+++- -++-....+..|++.+.+.+.|.+..|+..||+++..+++..+..+-+|...++..|.+.+.|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 58999999988652 22223344578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000156 380 PTVAESLTQTLQAMH 394 (2015)
Q Consensus 380 ~~V~~aa~~aL~al~ 394 (2015)
+.|+.++ +.|+.++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999988 5565554
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.17 Score=65.81 Aligned_cols=375 Identities=14% Similarity=0.159 Sum_probs=199.1
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHH
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (2015)
.++.+.|.|++=..+++||..+..++....+.......+++- ..-.|..|...+.=.|..+++..++.. -
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKN------Vaskn~EVKkLVyvYLlrYAEeqpdLA----L 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKN------VASKNIEVKKLVYVYLLRYAEEQPDLA----L 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH------hhccCHHHHHHHHHHHHHHhhcCCCce----e
Confidence 466778889999999999999998887755432222333332 345677777777766777777655432 1
Q ss_pred HHHHHHHhhhcchh--hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHH
Q 000156 684 LCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (2015)
Q Consensus 684 ~il~~LveKlgD~K--~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~ 761 (2015)
.-|..+-.-|+|+. +|..|..+|..+--..-...++-.+-+ +..+.+|.||..+..+|.++.. .+.+ +-..+++
T Consensus 108 LSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~-~~~D~s~yVRk~AA~AIpKLYs-Ld~e--~k~qL~e 183 (968)
T KOG1060|consen 108 LSINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKK-AVTDPSPYVRKTAAHAIPKLYS-LDPE--QKDQLEE 183 (968)
T ss_pred eeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHH-HhcCCcHHHHHHHHHhhHHHhc-CChh--hHHHHHH
Confidence 11333334467753 677776666554322212222333323 3467788888888888877653 1221 1235788
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHHHH----HhChhHH---hhhhhccH---H-HHHHHHHHHhcCCCCCCCCCcccccC
Q 000156 762 FCKDTGLQSSAAATRNATIKLLGALHK----FVGPDIK---GFLADVKP---A-LLSALDAEYEKNPFEGTVVPKKTVRA 830 (2015)
Q Consensus 762 ~l~~~gL~~sn~~VR~aA~~ll~~Ly~----~~G~~l~---~~L~~lkp---~-ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2015)
.++++ |.|.+|-|-.+|..++.++|- .++...+ .+|.++.. . ++..| -.+.+... +.|+.
T Consensus 184 ~I~~L-LaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL-~RYAR~~l---~~P~~---- 254 (968)
T KOG1060|consen 184 VIKKL-LADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINML-TRYARHQL---PDPTV---- 254 (968)
T ss_pred HHHHH-hcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHH-HHHHHhcC---CCccc----
Confidence 88888 888888888888887776651 1111111 11111110 0 01111 11111111 00000
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHH
Q 000156 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN 910 (2015)
Q Consensus 831 ~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~ 910 (2015)
. ++.+.... .|-+-+.... . ++ .+.....+...|++..+..|...|..
T Consensus 255 ---~-------~~~~e~n~-------------~~~~~~~~~~---~----~~--~P~~~d~D~~lLL~stkpLl~S~n~s 302 (968)
T KOG1060|consen 255 ---V-------DSSLEDNG-------------RSCNLKDKYN---E----IR--TPYVNDPDLKLLLQSTKPLLQSRNPS 302 (968)
T ss_pred ---c-------ccccccCc-------------cccccccccc---c----cC--CCcccCccHHHHHHhccHHHhcCCcH
Confidence 0 00000000 0000000000 0 00 01111223466788888889999999
Q ss_pred HHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHH
Q 000156 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGR 990 (2015)
Q Consensus 911 V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R 990 (2015)
|+..+++++=.+|... -+..|+-+++..|..+ ..++.....++..+..... .-|.|.+-...--.+...+++
T Consensus 303 VVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~-~lF~P~lKsFfv~ssDp~~vk 374 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRP-TLFEPHLKSFFVRSSDPTQVK 374 (968)
T ss_pred HHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcch-hhhhhhhhceEeecCCHHHHH
Confidence 9999999888887543 2234455666655544 3466666667766665543 233344433332111112333
Q ss_pred HHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000156 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~ 1045 (2015)
.-=++.|...+. ...+..++.-+..-+.+.+-++-.+|.++++.....+|.
T Consensus 375 ~lKleiLs~La~----esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 375 ILKLEILSNLAN----ESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred HHHHHHHHHHhh----hccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc
Confidence 333333333222 234566777777777666667888888888887777764
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.93 E-value=2.8 Score=55.47 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhhcchhhhH-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHH
Q 000156 347 QAIGNLARGLRTHFSGSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLN 425 (2015)
Q Consensus 347 ~~l~~La~~L~~~f~~~~~-~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~ 425 (2015)
+=+|+||-.|-=+=.+-+- .+...|-+-|...++.|+-.|-.++..++.. --..++.|++..-+++.+|-+|.-++.
T Consensus 87 KRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~--EmardlapeVe~Ll~~~~~~irKKA~L 164 (866)
T KOG1062|consen 87 KRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP--EMARDLAPEVERLLQHRDPYIRKKAAL 164 (866)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH--HHhHHhhHHHHHHHhCCCHHHHHHHHH
Confidence 3456666654322222333 3444455557788888888777777777643 334688999999999999999999999
Q ss_pred HHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000156 426 WVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 426 ~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G 477 (2015)
...+++.+.+. .+..+++...+.|.|.+..|=-++...+-.+++.-.
T Consensus 165 ca~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 165 CAVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred HHHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 99998876543 247788999999999999998888888877776644
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=1.1 Score=58.93 Aligned_cols=129 Identities=15% Similarity=0.243 Sum_probs=87.6
Q ss_pred hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--ch
Q 000156 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LD 970 (2015)
Q Consensus 893 ~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~ 970 (2015)
+.+++.-|+..-.+-+...+..++++++.+|...... ..++..++..+.-+...|.+.+...+..+.+.++ ++
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 4667777888888888999999999999988665433 5678888888887888888888889999998886 35
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHH-HHhccCCCCCChhhhHHHHHhhcCCCChHHHHH
Q 000156 971 KMVPYVTTALTDAKLGAEGRKDLFDWLS-KQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKA 1031 (2015)
Q Consensus 971 ~ll~~l~~~L~~~k~~p~~R~~~l~~L~-~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~a 1031 (2015)
.+++.+...+.+=. +|+.|..+ .||. ++...+ ++...++.-++....|....|+-.
T Consensus 423 ~vv~~l~~~~~sl~-epeak~am-iWilg~y~~~i---~~a~elL~~f~en~~dE~~~Vql~ 479 (734)
T KOG1061|consen 423 SVVAILCENLDSLQ-EPEAKAAL-IWILGEYAERI---ENALELLESFLENFKDETAEVQLE 479 (734)
T ss_pred hhhhhhcccccccC-ChHHHHHH-HHHHhhhhhcc---CcHHHHHHHHHhhcccchHHHHHH
Confidence 56665554443211 46666554 4543 322222 244556666777777777666553
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.66 Score=60.26 Aligned_cols=345 Identities=14% Similarity=0.219 Sum_probs=188.4
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccc----------cCCCC------------------------Chhh---HHH
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEEANK----------RIQPA------------------------GTGE---LFG 898 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~----------~I~~~------------------------~~~e---L~~ 898 (2015)
.++-+.++..+-+.+.+||..+-.++-+..+ +..|. .+.| +..
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcn 102 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCN 102 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHH
Confidence 3677788888999999999988776653211 11111 0111 123
Q ss_pred HHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHH----
Q 000156 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP---- 974 (2015)
Q Consensus 899 ~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~---- 974 (2015)
++++-|+-.|..|+-.+++.+..|-. ...++.++|.+..+|.....-||.-|.-|+..+.... +.++|
T Consensus 103 a~RkDLQHPNEyiRG~TLRFLckLkE------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~--~~L~pDape 174 (948)
T KOG1058|consen 103 AYRKDLQHPNEYIRGSTLRFLCKLKE------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF--EHLIPDAPE 174 (948)
T ss_pred HHhhhccCchHhhcchhhhhhhhcCc------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh--hhhcCChHH
Confidence 34444556677777777766554321 1457889999999999999999999999999999873 22222
Q ss_pred HHHHHHhcCCCChhH------------HHHHHHHHHHHhccCCCCCChhh-hHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000156 975 YVTTALTDAKLGAEG------------RKDLFDWLSKQLTGLSGFPDAAH-LLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 975 ~l~~~L~~~k~~p~~------------R~~~l~~L~~~l~~~~~~~~~~~-ll~pl~~~L~D~~~~VR~aA~~~L~~l~~ 1041 (2015)
.+..+|..+. .|.- +..++.||..++...+.-.+..+ .+.-++.-...+++.-|..-.+|+-.+..
T Consensus 175 Li~~fL~~e~-DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~ 253 (948)
T KOG1058|consen 175 LIESFLLTEQ-DPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLS 253 (948)
T ss_pred HHHHHHHhcc-CchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHh
Confidence 2333443221 1222 23466677666665554222222 22222221122555555555555543333
Q ss_pred HcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcccc
Q 000156 1042 AGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSV 1121 (2015)
Q Consensus 1042 ~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~ 1121 (2015)
.-.....-+....|- ..+ ..|. +-+
T Consensus 254 stssaV~fEaa~tlv---------------------------------------------~lS--------~~p~--alk 278 (948)
T KOG1058|consen 254 STSSAVIFEAAGTLV---------------------------------------------TLS--------NDPT--ALK 278 (948)
T ss_pred cCCchhhhhhcceEE---------------------------------------------Ecc--------CCHH--HHH
Confidence 221111111100000 000 0000 000
Q ss_pred chhhhhhhhhcc-----cCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhh---HHHHHhhcccCHHHHHHHHHH
Q 000156 1122 QDFAVQSQALLN-----VKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR---EDLHRRLLSTDFKKQVDGLEM 1193 (2015)
Q Consensus 1122 ~~~~~~~~~~~~-----~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~---~~l~~~lf~~D~k~~~~al~~ 1193 (2015)
...+..+. ..+|.|- .+ .|-+.+|++....++. =+++.-|-+.|+.-|-++++.
T Consensus 279 ----~Aa~~~i~l~~kesdnnvkl-----Iv---------ldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi 340 (948)
T KOG1058|consen 279 ----AAASTYIDLLVKESDNNVKL-----IV---------LDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDI 340 (948)
T ss_pred ----HHHHHHHHHHHhccCcchhh-----hh---------HHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHH
Confidence 00111111 0111121 10 0111122222222222 267778889999999999998
Q ss_pred HHHhcCcChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHH
Q 000156 1194 LQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVR 1273 (2015)
Q Consensus 1194 L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr 1273 (2015)
..+...+. |..-+..++..++.+||..-.-+.-.|=+.|+..+...--.|.++ |+..||.|++-+||..+..-
T Consensus 341 ~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~-aatvV~~ll~fisD~N~~aa 413 (948)
T KOG1058|consen 341 ALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV-AATVVSLLLDFISDSNEAAA 413 (948)
T ss_pred HHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHhccCCHHHH
Confidence 87776543 333355667778888877655556666666777777766778876 88899999999999887766
Q ss_pred HHHHHHHHHHhhccCc
Q 000156 1274 EKMRELTKQIVNFYSA 1289 (2015)
Q Consensus 1274 ~~v~~il~~i~~vy~~ 1289 (2015)
..|-..++.....||.
T Consensus 414 s~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 414 SDVLMFVREAIEKFPN 429 (948)
T ss_pred HHHHHHHHHHHHhCch
Confidence 6666666555555553
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.09 Score=66.96 Aligned_cols=365 Identities=15% Similarity=0.130 Sum_probs=210.4
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhc-cccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a-~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
+..+..+.+.+-..+..+.+.+++++..- ++.|..-.-..+++.|...| .+.+..++..|.-++..||...-..-..+
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 45566677777777999999999999631 11121111234566777777 47788999999999999986553332223
Q ss_pred hh-HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-c------hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC
Q 000156 934 SK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (2015)
Q Consensus 934 ~~-~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-l------~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~ 1005 (2015)
+. ..+|.++.++..+...|++-|.-+|..++.... + -..++.++..+... .+..=..-+.|....|...+
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~--~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS--DKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc--cchHHHHHHHHHHHHHHcCC
Confidence 22 367889999999999999999999998885543 1 12334455555433 12111233556655665544
Q ss_pred -CCCC---hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCC
Q 000156 1006 -GFPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1081 (2015)
Q Consensus 1006 -~~~~---~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~ 1081 (2015)
..+. +..+++.|..++.+.+.+|..-|.-++..+.....+ .+. .+ ++......+.+.+.....+..
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne-~iq-~v--i~~gvv~~LV~lL~~~~~~v~------ 296 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE-KIQ-MV--IDAGVVPRLVDLLGHSSPKVV------ 296 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH-HHH-HH--HHccchHHHHHHHcCCCcccc------
Confidence 2333 455666688899999999998877666655433332 211 11 122233444555444322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhhhhhc---------ccCCCChHHHhhhhhccccc
Q 000156 1082 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL---------NVKDSNKEDRERMVVRRFKF 1152 (2015)
Q Consensus 1082 ~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~k~~R~~~~~~k~~f 1152 (2015)
.++.|+. +.+. .+.+.+++..+ .+..+..+.-+|. --=|..
T Consensus 297 ---------------~PaLRai--GNIv------------tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikk-EAcW~i 346 (514)
T KOG0166|consen 297 ---------------TPALRAI--GNIV------------TGSDEQTQVVINSGALPVLSNLLSSSPKESIKK-EACWTI 346 (514)
T ss_pred ---------------cHHHhhc--ccee------------eccHHHHHHHHhcChHHHHHHHhccCcchhHHH-HHHHHH
Confidence 0000000 0000 01112222211 1112111110111 112443
Q ss_pred cCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCcChhhHHHH--HHHHHHHHHHhhcCcchHHHHH
Q 000156 1153 EDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV--LDILLRWFVLQFCKSNTTCLLK 1230 (2015)
Q Consensus 1153 ~~p~~e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~i~~--lDlllk~~~lr~~dtN~~vl~k 1230 (2015)
..-.....++.+.-|..-+=+.|+..|-+.||+-|.+|.=.+.....+...+.+.. -.-+++-|+..|.-.+++++..
T Consensus 347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v 426 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILV 426 (514)
T ss_pred HHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHH
Confidence 32222233445555666777889999999999999999999998887776554432 2236777777777789999999
Q ss_pred HHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcC
Q 000156 1231 VLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267 (2015)
Q Consensus 1231 ~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd 1267 (2015)
+||.|..++..-.... .+.. .-+.-+++..|-
T Consensus 427 ~Ld~l~nil~~~e~~~-~~~~----n~~~~~IEe~gg 458 (514)
T KOG0166|consen 427 ALDGLENILKVGEAEK-NRGT----NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHHHHhc-cccc----cHHHHHHHHccC
Confidence 9999998877654432 1100 344555666554
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.019 Score=64.77 Aligned_cols=130 Identities=21% Similarity=0.258 Sum_probs=101.5
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh
Q 000156 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (2015)
Q Consensus 866 ~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L 945 (2015)
++.+|..++-.+..++.. .|+.....++.+..+|.|.+..|+..|+.++..|... ++-+.-..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r-----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR-----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHh-----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 467899999999999863 2333456778888999999999999999999998753 55555566778999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcC-------CCChhHHHHHHHHHHHHhcc
Q 000156 946 GDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDA-------KLGAEGRKDLFDWLSKQLTG 1003 (2015)
Q Consensus 946 ~D~k~~Vr~aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~-------k~~p~~R~~~l~~L~~~l~~ 1003 (2015)
.|.++.||..|..++..+...-+ +...++.+...|.+. ..+.+-|..++.+|...+.+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998843 445566666666532 22456688888888877763
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.66 Score=59.75 Aligned_cols=191 Identities=18% Similarity=0.232 Sum_probs=138.9
Q ss_pred HHHHh-cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000156 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (2015)
Q Consensus 857 ~ll~~-l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~f~~~~ 934 (2015)
.++.. ....++-.|..+++.+..+++ |......+.+++..+...+ .......+..++.++..+++++--.-.+..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvN---K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVN---KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHc---CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 44443 344458999999999998874 4333334567777777766 566777888999999999998865556788
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--------C-----------chhhHHHHHHHHhcCCCChhHHHHHHH
Q 000156 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H-----------LDKMVPYVTTALTDAKLGAEGRKDLFD 995 (2015)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~--------g-----------l~~ll~~l~~~L~~~k~~p~~R~~~l~ 995 (2015)
..++..+++.|.| +.+...+..++..++.-. + ...++|.+.+..++. +...|...+.
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~~~k~~yL~ 345 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--ChhhHHHHHH
Confidence 8899999999999 667788888888777541 1 234455555555543 2346777777
Q ss_pred HHHHHhccCCCC---CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000156 996 WLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (2015)
Q Consensus 996 ~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L 1055 (2015)
.|.-.+.+.+.. +++..+++-++.+|.=.+.+||.++-.++..+...- .+.+.++++.|
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 777777777752 566777777999999889999999999999888777 55667666543
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.78 E-value=5.2 Score=56.38 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHH--------HhChhhHHhhhHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHhc-Cc---hh
Q 000156 908 NKNLVMATLITLGAVAS--------AMGPAVEKSSKGVLSDILKCL----GDNKKHMRECTLTVLDAWLAAV-HL---DK 971 (2015)
Q Consensus 908 N~~V~~~Al~~l~~La~--------alg~~f~~~~~~llp~ll~~L----~D~k~~Vr~aa~~aL~~i~~~~-gl---~~ 971 (2015)
|.....-.+-++|.++. .-|+.+.+....+.-.++.+| ++.+..+|..|..+|+.++-.- ++ ..
T Consensus 1185 ~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~ 1264 (1692)
T KOG1020|consen 1185 NFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSRE 1264 (1692)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHH
Confidence 44455667788888886 334555555555555555555 4777899999999999887543 32 34
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 000156 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (2015)
Q Consensus 972 ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~ 1002 (2015)
+...+...|.+.+.+...|..++.-+-.++.
T Consensus 1265 v~nly~~ila~~n~~~~~ki~~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1265 VLNLYDEILADDNSDIKSKIQLLQNLELYLL 1295 (1692)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 5556666676554223337777766655554
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.09 Score=67.56 Aligned_cols=191 Identities=15% Similarity=0.183 Sum_probs=149.4
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHH
Q 000156 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (2015)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~-~y~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (2015)
...++..|..+++.+..+++ |...+ .+.+++..+...+ ..........++.++.-+++||=-+-++....++..++
T Consensus 200 ~~~~~~~~~~~~~~la~LvN--K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVN--KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 45669999999998888886 33333 4677777777777 46666678888999999999886556788999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh--cC----CC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000156 373 EKLKEKKPTVAESLTQTLQAMHKA--GC----LN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (2015)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~al~~~--~~----~~-----------l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~ 435 (2015)
+.+.+ +.+...+..++..++.. .+ .+ +..++|.+..+.+..+...|...+..|..++++.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 55677777777777654 00 01 34567778888887777799999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccH
Q 000156 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (2015)
Q Consensus 436 ~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~ 490 (2015)
+..+...++.++|.+.++|+=.+++||.++.+++..+..--. ..+..++..|-+
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~-~~i~~hl~sLI~ 409 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP-ELISEHLSSLIP 409 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHH
Confidence 988889999999999999999999999999999988876653 346666665543
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.1 Score=68.20 Aligned_cols=364 Identities=20% Similarity=0.204 Sum_probs=203.9
Q ss_pred hhcCCChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh
Q 000156 10 EAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (2015)
Q Consensus 10 ~~~~lpl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~ 89 (2015)
+|---|+..-+.|++-=.|..+---+.+++.-..+ --+-.-+.+.++.++.|+|+.|--.++.+|....+.-...
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~--~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~--- 194 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD--LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV--- 194 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh--hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC---
Confidence 34444556666666666666666666666542111 0001124566677788888888888888887776654321
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHH----HHHHHHHHhhh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC-
Q 000156 90 YAKEVCDAIAAKCLTGRPKTVEKA----QAVFMLWVELE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK- 162 (2015)
Q Consensus 90 ~~~~v~~~LieK~l~~k~~~k~~a----~~~ll~~~E~~--~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~- 162 (2015)
....+.+.++.+.+.+....-+.+ ++++..|.--+ ..+.+++.+.+.+.|-|+-++.+++..+.+.+..+-.-
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN 274 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence 111223333444333223333333 23333332111 13467777777888888888888888777766655330
Q ss_pred CcChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhh
Q 000156 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (2015)
Q Consensus 163 ~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (2015)
..-.+.+-+.+..+++... . +---.+++++- ++...+.....++.-.|-
T Consensus 275 ~~~~~K~~~pl~tlls~~~-e-------~qyvaLrNi~l------il~~~p~~~~~~~~~Ff~----------------- 323 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSES-E-------IQYVALRNINL------ILQKRPEILKVEIKVFFC----------------- 323 (734)
T ss_pred HHHHHHhcccceeeecccc-h-------hhHHHHhhHHH------HHHhChHHHHhHhHeeee-----------------
Confidence 0012223333333333211 1 00011222210 011111111011100000
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC
Q 000156 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 322 (2015)
Q Consensus 243 ~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~ 322 (2015)
.+.|| .| .+.+-++.+..+++. .+
T Consensus 324 -------------------------------kynDP-----------iY---------vK~eKleil~~la~~-----~n 347 (734)
T KOG1061|consen 324 -------------------------------KYNDP-----------IY---------VKLEKLEILIELAND-----AN 347 (734)
T ss_pred -------------------------------ecCCc-----------hh---------hHHHHHHHHHHHhhH-----hH
Confidence 01111 11 112334444444431 23
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH
Q 000156 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV 402 (2015)
Q Consensus 323 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~ 402 (2015)
..++...|+..-.+..+..+..|++||+.+|...... ..++..+|+.+.-+..-|++.+...+..++.+..-..+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 5567777887778889999999999999999877654 67999999999988888999999999999988222346
Q ss_pred hHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 403 DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 403 ~il~~l~~~L~~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
.++..+...+.+ .+|..|.+...+++...+..+. ...++..+.+...|...+| ..+.+.+.+++|+.+
T Consensus 423 ~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a~elL~~f~en~~dE~~~V---ql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------ALELLESFLENFKDETAEV---QLELLTAAIKLFLKK 491 (734)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------HHHHHHHHHhhcccchHHH---HHHHHHHHHHHHhcC
Confidence 677777766664 6788886555444444433322 2556777888888888777 567777777777754
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.86 Score=59.10 Aligned_cols=261 Identities=12% Similarity=0.163 Sum_probs=144.1
Q ss_pred HHHhCCCCcChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCc
Q 000156 156 LSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235 (2015)
Q Consensus 156 l~~fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R 235 (2015)
|..|++.-+ .+.+-..+..+|+|+-+-||..|+.++--+|-.-.+ ++++.+ ..|+ +++.. +-|.
T Consensus 133 LS~fvTpdL-ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-Alr~~F-prL~-----------EkLeD-pDp~- 196 (877)
T KOG1059|consen 133 LSCIVTPDL-ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-ALRPCF-PRLV-----------EKLED-PDPS- 196 (877)
T ss_pred cccccCchh-hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-hHhhhH-HHHH-----------HhccC-CCch-
Confidence 456777422 266888888999999999999998887777766654 565543 3322 12221 1110
Q ss_pred cchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhh--ccCChHHHHHHHHHHHHHh
Q 000156 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV--KATKWSERKDAVAELTKLA 313 (2015)
Q Consensus 236 ~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l--~s~kWkeR~eaL~~L~~l~ 313 (2015)
+-|....-- +.. +- =+|- +-+. |. +.||+.+ .+.+|---+ -++-+.+|.
T Consensus 197 -V~SAAV~VI----------CEL----Ar-----KnPk------nyL~-LA-P~ffkllttSsNNWmLIK-iiKLF~aLt 247 (877)
T KOG1059|consen 197 -VVSAAVSVI----------CEL----AR-----KNPQ------NYLQ-LA-PLFYKLLVTSSNNWVLIK-LLKLFAALT 247 (877)
T ss_pred -HHHHHHHHH----------HHH----Hh-----hCCc------cccc-cc-HHHHHHHhccCCCeehHH-HHHHHhhcc
Confidence 111100000 000 00 0111 1111 22 4788877 458995321 233333333
Q ss_pred c-CCCCCCCChHHHHHHHHHHhcccC-HHHHHHHHHHHHH--HHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHH
Q 000156 314 S-TKRIAPGDFTEVCRTLKKLITDVN-IAVAVEAIQAIGN--LARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQT 389 (2015)
Q Consensus 314 ~-~~ki~~~~y~~l~~~L~k~l~D~N-~~V~~~A~~~l~~--La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~a 389 (2015)
- .|++-. .|+.-|...+..+. -.+..++++|+-. |..|+..+ ...+..++.-|=.-+-|+.++..=-+.-|
T Consensus 248 plEPRLgK----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~-~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 248 PLEPRLGK----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH-SASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred ccCchhhh----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc-HHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 1 343332 23444444443221 1133333333211 12223333 34566777777777788999998888888
Q ss_pred HHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCH-HHHHHHHHH
Q 000156 390 LQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP-EVRDAAFSV 468 (2015)
Q Consensus 390 L~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~-~VR~aA~~a 468 (2015)
+.-+.......+....+.|+.+|.++.+.+|..++..|.-++.. +.+.+|+..|+..+.+++. .-|+.-..-
T Consensus 323 m~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-------kNl~eIVk~LM~~~~~ae~t~yrdell~~ 395 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK-------KNLMEIVKTLMKHVEKAEGTNYRDELLTR 395 (877)
T ss_pred HHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 88877642222344457788999999999999999998877653 2347778888888887777 555554444
Q ss_pred HHHHH
Q 000156 469 LAAIA 473 (2015)
Q Consensus 469 l~~l~ 473 (2015)
+..++
T Consensus 396 II~iC 400 (877)
T KOG1059|consen 396 IISIC 400 (877)
T ss_pred HHHHh
Confidence 43333
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.43 Score=59.59 Aligned_cols=155 Identities=21% Similarity=0.150 Sum_probs=112.2
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHH
Q 000156 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2015)
Q Consensus 865 ~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~ 944 (2015)
..|..|..+++.+..+- ..+....|+..+.|....|+..|...++.+.... ..+.+.+...
T Consensus 161 ~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 161 ALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred hHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 34678888877776543 2566788888999999999999999888776443 5677888999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCC
Q 000156 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024 (2015)
Q Consensus 945 L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~ 1024 (2015)
+.|....||.++..++..+ |...-.+.+...+.+. ++.++.....++. .........++...+.|.
T Consensus 222 ~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 287 (335)
T COG1413 222 LSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLIDE 287 (335)
T ss_pred hcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhcc
Confidence 9999999999998887654 5566667778888765 3455555444443 112344566688889999
Q ss_pred ChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000156 1025 SSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2015)
Q Consensus 1025 ~~~VR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2015)
+..+|..+...+..+.............
T Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~a~~~~~ 315 (335)
T COG1413 288 ANAVRLEAALALGQIGQEKAVAALLLAL 315 (335)
T ss_pred hhhHHHHHHHHHHhhcccchHHHHHHHh
Confidence 9999999998888776555554444443
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0061 Score=54.50 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000156 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2015)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l 472 (2015)
|.+|..++..|+++.. .....+.++++.++|.|..+|.|.+++||.+|..+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~-~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE-GCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTT-TTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhc-ccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999988443 334456678899999999999999999999999999754
|
... |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.078 Score=59.86 Aligned_cols=109 Identities=16% Similarity=0.242 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCC
Q 000156 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKV 416 (2015)
Q Consensus 338 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~-il~~l~~~L~~Kn 416 (2015)
|+.|+..++.+++.|+... ...++..+|.+...+.|+.+.||..+..+|..++..+...+.. ++..++..+.+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 4678899999999998754 4567778899999999999999999999999998875555554 4488888999999
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000156 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (2015)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (2015)
+.||..+..++..+.....+..+...+.+++-.+
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999887744444433333333333
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.021 Score=56.06 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=70.0
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000156 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (2015)
Q Consensus 368 lp~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (2015)
+|.|++.+ .++.+.||..+..+|.. ..-..+++.+...+++++|.||..++..|..+ . -+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~----------~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE------LGDPEAIPALIELLKDEDPMVRRAAARALGRI-G----------DPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC------CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H----------HHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH------cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C----------CHHH
Confidence 57889989 89999999887777762 34568899999999999999999999998864 1 1557
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHH
Q 000156 447 VPICMECLND-GTPEVRDAAFSVLA 470 (2015)
Q Consensus 447 ~p~l~k~L~D-s~~~VR~aA~~al~ 470 (2015)
++.+.+.+.| .+..||.+|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888888866 55678999999885
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.23 Score=63.52 Aligned_cols=277 Identities=17% Similarity=0.195 Sum_probs=161.5
Q ss_pred chhhhHHHHHHHHHHHhhhChh-HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC-CC---CChh---hHHHHHHhc
Q 000156 695 DIKTRAHAMKCLTTFSEAVGPG-FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV-SH---LKLK---DLIDFCKDT 766 (2015)
Q Consensus 695 D~K~r~~a~~~L~~l~e~~~~~-~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~-~~---l~~k---~li~~l~~~ 766 (2015)
|.++|..|.+.|.++.|-+... ...++..+.+ .+.+--||.+++..+.-.-+.+.. .. -+.+ .....+-.+
T Consensus 211 D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~ 289 (823)
T KOG2259|consen 211 DFRVRTHAVEGLLALSEGFKLSKACYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRA 289 (823)
T ss_pred CcchHHHHHHHHHhhcccccccHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHH
Confidence 4678888888888888855433 3455555554 566777888887766655554421 10 1111 122222233
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhc----CCCCCCCCCcccccCccccCCCCCC-C
Q 000156 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK----NPFEGTVVPKKTVRASESTSSVSSG-G 841 (2015)
Q Consensus 767 gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k----~~~~~~p~p~R~~r~~~~~~s~~~~-~ 841 (2015)
+.|-.-.||-.|.++||.+-.... .| +.++|++..-. -.. ..-.|.+...+ .+=.+|. .
T Consensus 290 -v~D~sl~VRV~AaK~lG~~~~vSe----e~-------i~QTLdKKlms~lRRkr~-ahkrpk~l~s~---GewSsGk~~ 353 (823)
T KOG2259|consen 290 -VRDRSLSVRVEAAKALGEFEQVSE----EI-------IQQTLDKKLMSRLRRKRT-AHKRPKALYSS---GEWSSGKEW 353 (823)
T ss_pred -HhcCceeeeehHHHHhchHHHhHH----HH-------HHHHHHHHHhhhhhhhhh-cccchHHHHhc---CCcccCccc
Confidence 777888899999999988754321 12 22333332211 000 00001111000 0000000 0
Q ss_pred CCCCCCc-------cc-ccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHH
Q 000156 842 SDGLPRE-------DI-SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (2015)
Q Consensus 842 ~d~lprv-------dI-s~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~ 913 (2015)
.+..|.. .| -+--.+.|+-+++|.=+.+|..|+..+..+... + |.--..-+..|...|+|--..|+.
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s---s--P~FA~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS---S--PGFAVRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC---C--CCcHHHHHHHHHHHhccHHHHHHH
Confidence 1112211 11 111235788889999999999999999998752 1 221256678889999999999999
Q ss_pred HHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCChhHH
Q 000156 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGR 990 (2015)
Q Consensus 914 ~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~k~~p~~R 990 (2015)
.|+..+..|+..+ ..-+..++.++..|.|....||++..+.|... +... ++.++..+...|. ++ |+-|
T Consensus 429 ~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~~~d~~~i~m~v~~lL~~L~--ky-PqDr 499 (823)
T KOG2259|consen 429 KAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNA-RVSDLECIDMCVAHLLKNLG--KY-PQDR 499 (823)
T ss_pred HHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhh--hC-CCCc
Confidence 9999999999774 34466789999999999999999987766532 1111 2223333333333 32 6667
Q ss_pred HHHHHHHHHHhc
Q 000156 991 KDLFDWLSKQLT 1002 (2015)
Q Consensus 991 ~~~l~~L~~~l~ 1002 (2015)
-+++.-+...=+
T Consensus 500 d~i~~cm~~iGq 511 (823)
T KOG2259|consen 500 DEILRCMGRIGQ 511 (823)
T ss_pred HHHHHHHHHHhc
Confidence 777777665433
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.6 Score=57.46 Aligned_cols=250 Identities=17% Similarity=0.226 Sum_probs=132.8
Q ss_pred hCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHH
Q 000156 728 DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807 (2015)
Q Consensus 728 ~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~ 807 (2015)
++.+|-+|..++.+...++..-.- .+..++...+++ |.+.+.+|--++..++.+|... +++-.+++.++-|.+..
T Consensus 152 ~~~~~~irKKA~Lca~r~irK~P~---l~e~f~~~~~~l-L~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~l~~~lV~ 226 (866)
T KOG1062|consen 152 QHRDPYIRKKAALCAVRFIRKVPD---LVEHFVIAFRKL-LCEKHHGVLIAGLHLITELCKI-SPDALSYFRDLVPSLVK 226 (866)
T ss_pred hCCCHHHHHHHHHHHHHHHHcCch---HHHHhhHHHHHH-HhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 455666666666666555543211 123355555666 7777888888888888777754 34444566777777666
Q ss_pred HHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhc--c
Q 000156 808 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA--N 885 (2015)
Q Consensus 808 ~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a--~ 885 (2015)
.|.+-...- + .|.-. -.|..|.+=.+.| . -+++-++..+-..-...-+-|.+++..+ +
T Consensus 227 iLk~l~~~~-y----speyd----------v~gi~dPFLQi~i----L-rlLriLGq~d~daSd~M~DiLaqvatntdss 286 (866)
T KOG1062|consen 227 ILKQLTNSG-Y----SPEYD----------VHGISDPFLQIRI----L-RLLRILGQNDADASDLMNDILAQVATNTDSS 286 (866)
T ss_pred HHHHHhcCC-C----CCccC----------ccCCCchHHHHHH----H-HHHHHhcCCCccHHHHHHHHHHHHHhccccc
Confidence 666543211 0 00000 0000111000000 0 1112222221111111112222222210 1
Q ss_pred ccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhChhh--------------H-HhhhHHHHHHHHHhCCCc
Q 000156 886 KRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAV--------------E-KSSKGVLSDILKCLGDNK 949 (2015)
Q Consensus 886 ~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~f--------------~-~~~~~llp~ll~~L~D~k 949 (2015)
+.+.. .=|.......+ -++|..++..|+++|+.+...-..++ + ..+..-=..++.||+|..
T Consensus 287 kN~Gn---AILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD 363 (866)
T KOG1062|consen 287 KNAGN---AILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD 363 (866)
T ss_pred ccchh---HHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc
Confidence 11110 11222222222 23445555555555555442222111 1 122233467899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC
Q 000156 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (2015)
Q Consensus 950 ~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~ 1007 (2015)
..+|.-|.+-+..++..-.+..++..+..+|... .++.|.++...+.+..+.+.+.
T Consensus 364 ~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNESNVRVMVKELLEFLESS--DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999855 5789999999998888777654
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.1 Score=63.95 Aligned_cols=407 Identities=17% Similarity=0.146 Sum_probs=194.3
Q ss_pred hhcCCChHHHHHHHHHHHHHhhccCCCC-----------chHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhh
Q 000156 19 RLLHKNWKVRNEANIDLAALCDSITDPK-----------DNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA 87 (2015)
Q Consensus 19 rl~~k~WK~R~~ayeeL~~~~~~~~d~~-----------~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~ 87 (2015)
++.|-.-|.|..|+.-+....+.++.-. .|+.. -..++.-.++|.|+...--+|+.+.+++..... |
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g-~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~-f 81 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELG-SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ-F 81 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCC-CceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-H
Confidence 4567778999999998888876542110 01110 012233368999999999999999888876532 2
Q ss_pred hhhHHHHHHHHHHhhcCC-----ChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC
Q 000156 88 GRYAKEVCDAIAAKCLTG-----RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK 162 (2015)
Q Consensus 88 ~~~~~~v~~~LieK~l~~-----k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~ 162 (2015)
-....+. -+-.|+. -..++ .+-.|++...|.| -.|.++..|+.+|..++.+-...
T Consensus 82 ls~a~~~----~~~~ftpf~v~~a~si~-~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p~~ 141 (728)
T KOG4535|consen 82 LSVAEDT----SDHAFTPFSVMIACSIR-ELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAPYD 141 (728)
T ss_pred HHHHhcc----CCcCCCchHHHHHHHHH-HHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCchH
Confidence 1110000 0000100 00011 1223333333332 34667788888888888764433
Q ss_pred CcC---hhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHH--hcC-CCCCCCcc
Q 000156 163 IIP---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELV--NVS-GTARPTRK 236 (2015)
Q Consensus 163 ~i~---~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~--k~~-~~~~P~R~ 236 (2015)
.+. +-.+.-++.++..|.|++||-.+..++..|..-- .+.|.....|..... +.. .-..|...
T Consensus 142 ~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~-----------~~~pei~~~~~~~~s~~n~~~~h~s~~~~ 210 (728)
T KOG4535|consen 142 RLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH-----------APLPEVQLLLQQPCSSSNSATPHLSPPDW 210 (728)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC-----------CCCHHHHHHhcCCCccccccCCCCCChHH
Confidence 222 2346778899999999999999887766654221 121211111100000 000 00001000
Q ss_pred chhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhh------hhcc--CChHHHHHHHHH
Q 000156 237 IRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWE------GVKA--TKWSERKDAVAE 308 (2015)
Q Consensus 237 ~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~------~l~s--~kWkeR~eaL~~ 308 (2015)
. ++.. .|+...+-.++.+.+...+--++.++--..-+++.+-+. .+++ .---.|.|+++-
T Consensus 211 ~-----~~l~-------~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qv 278 (728)
T KOG4535|consen 211 W-----KKLP-------AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQV 278 (728)
T ss_pred H-----HhcC-------CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHH
Confidence 0 0000 000000000000011111112222221111122222111 1111 223468899998
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh--hhHhHHHHHHHHhc----------
Q 000156 309 LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG--SSRFLLPVLLEKLK---------- 376 (2015)
Q Consensus 309 L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~--~~~~llp~LL~klk---------- 376 (2015)
|..++..-.+....+.++.+.+.+.+.|.-+.+-..+.+|+..+..++.....| .-..+.-..+-..-
T Consensus 279 l~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~Y 358 (728)
T KOG4535|consen 279 LTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALY 358 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhh
Confidence 887765333333446678888888888999999999999999999988843321 11111111111111
Q ss_pred c-CcHHHHHHHHHHHHHHHHhcCCChHh----HHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000156 377 E-KKPTVAESLTQTLQAMHKAGCLNLVD----VVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (2015)
Q Consensus 377 d-kk~~V~~aa~~aL~al~~~~~~~l~~----il~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (2015)
| --.....++..++..|.......+++ ..+....++. |||--+|.+++..+.-.+-+..-.............+
T Consensus 359 Ds~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~i 438 (728)
T KOG4535|consen 359 DSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAI 438 (728)
T ss_pred hhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHH
Confidence 1 11122233334443333221112222 2333344443 7777777777666554443332222112234445555
Q ss_pred HHHhcCCCHHHHHHHHHHHH
Q 000156 451 MECLNDGTPEVRDAAFSVLA 470 (2015)
Q Consensus 451 ~k~L~Ds~~~VR~aA~~al~ 470 (2015)
...+.|+.=.+|..|+=+++
T Consensus 439 l~sl~d~~ln~r~Kaawtlg 458 (728)
T KOG4535|consen 439 LMSLEDKSLNVRAKAAWSLG 458 (728)
T ss_pred HHHhhhHhHhHHHHHHHHhh
Confidence 66666666666666655444
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.13 Score=63.16 Aligned_cols=184 Identities=19% Similarity=0.159 Sum_probs=123.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC----ChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhC--hhh
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA----GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAV 930 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~----~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg--~~f 930 (2015)
+.+..+.+++-+.|.+||+.+..++.. +..+. .+..|+..+.+.++-....=...|+++++.++-.+| .+-
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~---~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSS---RYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 567778999999999999999999973 22221 246778888877765555667789999999999987 666
Q ss_pred HHhhhHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhcC--chh------hHHHHHHH--Hh-cCCC-------ChhHH
Q 000156 931 EKSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWLAAVH--LDK------MVPYVTTA--LT-DAKL-------GAEGR 990 (2015)
Q Consensus 931 ~~~~~~llp~ll~~L~D~k~--~Vr~aa~~aL~~i~~~~g--l~~------ll~~l~~~--L~-~~k~-------~p~~R 990 (2015)
+...+.+.|.|...+.|... .+|.++..||..+.-.++ .+. .+..++.. ++ +.+. ++.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 77888999999999988653 477888888877655443 222 23322221 22 1110 12333
Q ss_pred -HHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000156 991 -KDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2015)
Q Consensus 991 -~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G 1044 (2015)
..+-.|- -.+...+. ...+...++.+..+|+..+.+||.+|-+++..++....
T Consensus 204 ~aAL~aW~-lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 204 AAALSAWA-LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3334442 23333332 11234455558889999999999999999998877665
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.5 Score=52.57 Aligned_cols=241 Identities=15% Similarity=0.185 Sum_probs=162.2
Q ss_pred hhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhcc
Q 000156 171 KMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 250 (2015)
Q Consensus 171 ~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~ 250 (2015)
..|.+.|-+.|..+|..|+.++.++-..+.++ .|...++.-|-+.|
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--------~L~~~ev~~L~~F~-------------------------- 47 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD--------FLSRQEVQVLLDFF-------------------------- 47 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--------hccHHHHHHHHHHH--------------------------
Confidence 34667788899999999999988888777542 23333333332222
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHH
Q 000156 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTL 330 (2015)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L 330 (2015)
.+++ .+|.-=..++..+.+|++...+..+....++..+
T Consensus 48 ----------------------------------------~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l 85 (262)
T PF14500_consen 48 ----------------------------------------CSRL--DDHACVQPALKGLLALVKMKNFSPESAVKILRSL 85 (262)
T ss_pred ----------------------------------------HHHh--ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHH
Confidence 2222 2344445566777777765555555555666655
Q ss_pred HHHhc--ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHH
Q 000156 331 KKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVED 407 (2015)
Q Consensus 331 ~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~ 407 (2015)
.+.+. .--...+....+++..|...-+.....+...++..+++.+ +||.|.-.--+...+..+... ..+....++
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~ 163 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE--FDISEFAED 163 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccchhHHH
Confidence 54333 2222345666777777776655555556677888888887 788888777778888877776 555667777
Q ss_pred HHHHhh---------cCC-h--HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 408 VKTSVK---------NKV-P--LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 408 l~~~L~---------~Kn-p--~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
+...+. .+| | -.|...-.-|..|+..++ .+ .+..+|.+..-|..+.+.|+.-+.++|......
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~--~f---a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP--LF---APFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH--hh---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 765542 122 2 356666677777776432 12 367889999999999999999999999999999
Q ss_pred hCchHHHHHHHhccHHHHH
Q 000156 476 VGMRPLERSIEKLDDVRRN 494 (2015)
Q Consensus 476 ~Ge~~~~~~l~~Ld~~~~k 494 (2015)
+|.+.+.+++..+=+.-|.
T Consensus 239 y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 239 YGADSLSPHWSTIWNALKF 257 (262)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9988899988887554443
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.043 Score=61.55 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHh-hhcchhhhHhHHHHH-----------HH-HhccCcHHHHHHHHHHHHHHHHhc---------
Q 000156 340 AVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVL-----------LE-KLKEKKPTVAESLTQTLQAMHKAG--------- 397 (2015)
Q Consensus 340 ~V~~~A~~~l~~La~~L-~~~f~~~~~~llp~L-----------L~-klkdkk~~V~~aa~~aL~al~~~~--------- 397 (2015)
+|+..|+.||+.+++.. ++.|..|+..++|.- +. -++|..+.||.++..++.+++...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37889999999999994 566888888888865 33 247999999999999999998750
Q ss_pred ----C---CCh----HhHHH----HHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHHhcCCCHH
Q 000156 398 ----C---LNL----VDVVE----DVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (2015)
Q Consensus 398 ----~---~~l----~~il~----~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~L~Ds~~~ 460 (2015)
. +++ ..++- .+..+++ .+++.+-.+.++.+..+++.++-..+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 112 22232 3345555 578889999999999999988766554 56788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000156 461 VRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 461 VR~aA~~al~~l~~~~G 477 (2015)
||.++.-|++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876544
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.03 Score=57.99 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=84.2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---CC-ChH-hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000156 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CL-NLV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~---~~-~l~-~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (2015)
.+++.+++.+.+.+..++..+..+|..+.... +. -.. .+++.+...+.+.++.++..++..|..+....+.. ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HH
Confidence 37888999999999999999999999987641 00 012 56788888999999999999999999987654322 22
Q ss_pred Hhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 441 ~~l-~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
... ..+++.+.+++++.+.++|..|..+|+.+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222 348999999999999999999999998764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.02 Score=56.25 Aligned_cols=85 Identities=26% Similarity=0.366 Sum_probs=68.1
Q ss_pred hHHHHhc-CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000156 856 PTLVKSL-ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (2015)
Q Consensus 856 ~~ll~~l-~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~ 934 (2015)
+.|++.+ +|++|.+|.++++.+..+- -.+.++.|...++|.|..|+..|+..++.+. .
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 3577777 8999999999988887321 2578999999999999999999999999873 2
Q ss_pred hHHHHHHHHHhCCC-cHHHHHHHHHHHH
Q 000156 935 KGVLSDILKCLGDN-KKHMRECTLTVLD 961 (2015)
Q Consensus 935 ~~llp~ll~~L~D~-k~~Vr~aa~~aL~ 961 (2015)
+..++.+.+.+.+. ...||.+|..+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45788888888775 5667999988874
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.57 Score=60.60 Aligned_cols=181 Identities=15% Similarity=0.189 Sum_probs=109.3
Q ss_pred cchHHHHhc--CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccc-hHHHHHHHHHHHHHHHHHhC-hh
Q 000156 854 FTPTLVKSL--ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMG-PA 929 (2015)
Q Consensus 854 L~~~ll~~l--~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~~l~~La~alg-~~ 929 (2015)
+.|.|++.+ ++.||- +-.|-++.. +-..+.|..-..|+..|...+... -..+.-.+++++-.....-| ++
T Consensus 219 LAP~ffkllttSsNNWm-----LIKiiKLF~-aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWV-----LIKLLKLFA-ALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred ccHHHHHHHhccCCCee-----hHHHHHHHh-hccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 567888876 444893 333444443 234566665567888888777433 33455555555433321222 24
Q ss_pred hHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC
Q 000156 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (2015)
Q Consensus 930 f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~ 1007 (2015)
-...+..++..+-..+-|+.++.+--+..|+..++..-+ +...-+.|..+|.+. .+..|..++..+-..+. .
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVs----k 366 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVS----K 366 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhh----h
Confidence 445566677777777889999999998888888775432 233445677888766 46778888877766554 3
Q ss_pred CChhhhHHHHHhhcCCCCh-HHHHHHHHHHHHHHHHcChh
Q 000156 1008 PDAAHLLKPASIAMTDKSS-DVRKAAEACIVEILRAGGQE 1046 (2015)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~-~VR~aA~~~L~~l~~~~G~~ 1046 (2015)
..+..+++.+...+.+..+ ..|..-..-+-.+...-.|.
T Consensus 367 kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~ 406 (877)
T KOG1059|consen 367 KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQ 406 (877)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhh
Confidence 3566677777777666655 55655444444444433343
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=5 Score=50.01 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=108.5
Q ss_pred hhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhH-HhhhhhccHHHHHHHHH-HHhcCCCCCCCCCcccccCcccc
Q 000156 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI-KGFLADVKPALLSALDA-EYEKNPFEGTVVPKKTVRASEST 834 (2015)
Q Consensus 757 k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l-~~~L~~lkp~ll~~Le~-ef~k~~~~~~p~p~R~~r~~~~~ 834 (2015)
...+.|+..+ -.+.|.-||.+|+..++.+..+-|-.. ..|..+--..++..|.+ .|.+-... . . +.
T Consensus 390 T~~~~Fl~GC-~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~Ka---a----w----tl 457 (728)
T KOG4535|consen 390 TLCITFLLGC-NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKA---A----W----SL 457 (728)
T ss_pred hhhHHHHhcc-cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHH---H----H----Hh
Confidence 3456666653 566678899999999887766666432 22333333333333333 23211000 0 0 00
Q ss_pred CCCCCCCCCCCCCcc-----cccccchHHHH---hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--
Q 000156 835 SSVSSGGSDGLPRED-----ISGKFTPTLVK---SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-- 904 (2015)
Q Consensus 835 ~s~~~~~~d~lprvd-----Is~~L~~~ll~---~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL-- 904 (2015)
+.-.....+.+|.+| +++.+...++. .....+.|+|..+++.|..++.-- ..|.+-.++++++.=+..+
T Consensus 458 gnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl-q~i~~~~~~e~~~~~~~~l~~ 536 (728)
T KOG4535|consen 458 GNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL-QPIEKPTFAEIIEESIQALIS 536 (728)
T ss_pred hhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH-HHhhhccHHHHHHHHHHhccc
Confidence 000000011222222 22222222221 234457999999999999887632 2233333577765444433
Q ss_pred ---ccchHHHHHHHHHHHHHHHHHhChhhH--HhhhHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcCc
Q 000156 905 ---YDSNKNLVMATLITLGAVASAMGPAVE--KSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVHL 969 (2015)
Q Consensus 905 ---~DsN~~V~~~Al~~l~~La~alg~~f~--~~~~~llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~gl 969 (2015)
...|..|+-.+|.+++.|.+.-.-+|. +.+..+++.++..+.|-+. -||.-|..+|.......+.
T Consensus 537 ~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~ 607 (728)
T KOG4535|consen 537 TVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQY 607 (728)
T ss_pred ceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccc
Confidence 456889999999999999865443332 5677788888877766443 3676666666555554443
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.013 Score=60.61 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=83.7
Q ss_pred chHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh-hhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~-~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
.+.+++.+.+.+|..|..++..|..+.... ........ .++++.|...|.|.|..|+..++.+++.|+..-......+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 356778888999999999999999988531 11111111 3678888889999999999999999999987654333333
Q ss_pred hh-HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000156 934 SK-GVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (2015)
Q Consensus 934 ~~-~llp~ll~~L~D~k~~Vr~aa~~aL~~i~ 964 (2015)
.. .+++.+++.+.+.+..++..+..+|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 48999999999999999999999988764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0096 Score=46.60 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 446 l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
++|.+.++++|++++||.+|..||+.+.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=95.98 E-value=2.3 Score=53.86 Aligned_cols=313 Identities=16% Similarity=0.207 Sum_probs=186.2
Q ss_pred hhccCCHHHHHHHHHHHHHHHHhccccc------hHHHHHHHHHhc----CCCCccc-HHHHHHHHHHHHHHHHHHc---
Q 000156 609 QLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAATA--- 674 (2015)
Q Consensus 609 ~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~Lv~~L~~----~pg~~Ds-N~qV~~~~Le~l~~l~~~~--- 674 (2015)
+|.+.+--.|.+||..|...+...+... ...+.+.+.+.. .+.=++. +..+..++|.++..++-..
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 3566777889999999999987743321 123344444421 1222333 6678889999999887531
Q ss_pred CCCchhHHHHHHHHHHhhhcchh-hhHHHHHHHHHHHh-hhChhHH----HHHHHHHh---hh-CCChhHHHHHHHHHHH
Q 000156 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIM---KD-HKNPKVLSEGILWMVS 744 (2015)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgD~K-~r~~a~~~L~~l~e-~~~~~~V----l~~L~~~l---~~-~KnpKv~~~~l~~L~~ 744 (2015)
..++......++...++.+.++. .|..+...|..+.+ .+++.++ ...++..+ .+ -++--+..|.+..+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 23455555668888888887764 46666666666654 4554432 33333322 12 3455578899999999
Q ss_pred HHHHhCCCCC-ChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCC
Q 000156 745 AVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (2015)
Q Consensus 745 li~~fG~~~l-~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~ 823 (2015)
++..+...-. +...-++.+... +-++...+|..|+.+...+...+|+.- .+-+.+.+.++..-.+
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~---------~~s~~~~~~~~~~~~~---- 226 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNK---------ELSKSVLEDLQRSLEN---- 226 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhH---------HHHHHHHHHhcccccc----
Confidence 9988754211 223344455454 678899999999999988888888531 1112222222211000
Q ss_pred CcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCC-CChHHHHHHHH---HHHHHHHhccccCC-CCChhhHHH
Q 000156 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIE---AVNKILEEANKRIQ-PAGTGELFG 898 (2015)
Q Consensus 824 p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d-~~Wk~R~eale---~L~~ll~~a~~~I~-~~~~~eL~~ 898 (2015)
. .+...+.+.+...+.+ ++++ .+++ .+-.++. ++.+. ...+.+.+.
T Consensus 227 -----------------------~-~~~~~~~~~L~~mi~~~~~~~---~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~ 277 (372)
T PF12231_consen 227 -----------------------G-KLIQLYCERLKEMIKSKDEYK---LAMQIWSVVILLLG--SSRLDSWEHLNEWLK 277 (372)
T ss_pred -----------------------c-cHHHHHHHHHHHHHhCcCCcc---hHHHHHHHHHHHhC--CchhhccHhHhHHHH
Confidence 0 0011122223333344 2221 1222 2223332 12222 233578888
Q ss_pred HHHhccccchHHHHHHHHHHHHHHHHHhChh---hHHhhhHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHH
Q 000156 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPA---VEKSSKGVLSDILKCLGDNK-----KHMRECTLTVLDAWL 964 (2015)
Q Consensus 899 ~L~~rL~DsN~~V~~~Al~~l~~La~alg~~---f~~~~~~llp~ll~~L~D~k-----~~Vr~aa~~aL~~i~ 964 (2015)
.....++.++..++.+|+.++..+.-++..+ ..+.++.++.++...+...+ ..++.++..++..+.
T Consensus 278 v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 278 VPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 8888999999999999999999999988765 34667778888877765322 267777777666554
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.94 E-value=7.6 Score=52.10 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCC
Q 000156 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKL 985 (2015)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~ 985 (2015)
..|+..++-+++.|+-+-+ ..++.++|.+.+-|.-+. ..||.-.+-++..++.+.. .+.++|.|...|.++
T Consensus 945 ~~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp-- 1018 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDP-- 1018 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCc--
Confidence 3577888888888887765 456677899988886554 4599999999999988874 689999999999988
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCh-hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000156 986 GAEGRKDLFDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 986 ~p~~R~~~l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~ 1045 (2015)
.+.+|..++..|++.++.--- .+ -.+..-++..|-|.+++||.-|..|+..+...--+
T Consensus 1019 ~~iVRrqt~ilL~rLLq~~~v--Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQFGIV--KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhhh--hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc
Confidence 589999999999988763111 11 23344466678999999999999999988765443
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.13 Score=64.10 Aligned_cols=190 Identities=17% Similarity=0.158 Sum_probs=133.6
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhccccCCC--CChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000156 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQP--AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2015)
Q Consensus 858 ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~--~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~ 935 (2015)
+.....+..|+.|....-.+.++.. +.+-+ ..+++++..|..+..|++..++..|+.+++.++..+......|..
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~---~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~ 298 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKR---PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT 298 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhC---cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH
Confidence 3344566789999988777777775 33333 236899999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHH-------HHHHHhcCCCChhHHHHHHHHHHHHhccCCC-
Q 000156 936 GVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPY-------VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG- 1006 (2015)
Q Consensus 936 ~llp~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl~~ll~~-------l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~- 1006 (2015)
.++-.++..|-| .+..|.-.++.||..+......+.+-++ +.+.+.+. +++.|...+-.+.. +..+..
T Consensus 299 ~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~-L~~l~g~ 375 (533)
T KOG2032|consen 299 TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGA-LAKLAGG 375 (533)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHH-HHHHcCC
Confidence 999888877765 4567888888999888887654444332 22334444 46788765544332 222211
Q ss_pred --CCCh----hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000156 1007 --FPDA----AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (2015)
Q Consensus 1007 --~~~~----~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~ 1053 (2015)
...+ ..-..|++-.|+|+++-|-.|.+..+......++-+....++.
T Consensus 376 ~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 376 GWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred CchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 1122 2234467778999999998888887776666666555555544
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.37 Score=60.20 Aligned_cols=210 Identities=16% Similarity=0.141 Sum_probs=138.9
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2015)
.+.+.+.+.+|+.|...+--+..+...+.+.. +.+++++-.+.....|++..++..||.+|+.++.++..+.-.|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 44455788999999988887777776555543 67888999999999999999999999999999999877777777777
Q ss_pred HHHHHHHhcc-CcHHHHHHHHHHHHHHHHh-cCCChHhH----HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---H
Q 000156 368 LPVLLEKLKE-KKPTVAESLTQTLQAMHKA-GCLNLVDV----VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---A 438 (2015)
Q Consensus 368 lp~LL~klkd-kk~~V~~aa~~aL~al~~~-~~~~l~~i----l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~---~ 438 (2015)
+-.++-.+-| -+..|.-.+..||..+... ....+..+ .-.+..-.++-++++|..+...++.+..-++.. .
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 7777777755 3456666677777766654 11222222 223334556899999999988888766654432 1
Q ss_pred HHH-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHH
Q 000156 439 VLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499 (2015)
Q Consensus 439 l~~-~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~ 499 (2015)
+.. ..+...| +.-.++|++|.|-.|.+..+-+..--++-+....++++.-+..+..+++.
T Consensus 381 Fte~v~k~~~~-lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~F 441 (533)
T KOG2032|consen 381 FTEQVKKRLAP-LLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAF 441 (533)
T ss_pred hHHHHHhcccc-ceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHH
Confidence 211 1122223 23347999999977777666555444443445555553323333344443
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.068 Score=59.51 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=98.9
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHh-ccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHH---HHHhChh
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---ASAMGPA 929 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~-a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~L---a~alg~~ 929 (2015)
+.+-|++++...+.--|.-|.+.+.+++.. +..+|.|-. .+|+..|+..|+-.|..|...+|+++..| ....|..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 456889999988888888999999999986 556777764 89999999999999999999999999999 7888999
Q ss_pred hHHhhhHHHHHHHH--H----hC-----CCcHHHHHHHHHHHHHHHHhcCchhhH
Q 000156 930 VEKSSKGVLSDILK--C----LG-----DNKKHMRECTLTVLDAWLAAVHLDKMV 973 (2015)
Q Consensus 930 f~~~~~~llp~ll~--~----L~-----D~k~~Vr~aa~~aL~~i~~~~gl~~ll 973 (2015)
+.+|.++++|.+-- . ++ ..++.+++...++|..+-++.|-+.++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~ 172 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI 172 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence 99999999998762 1 22 245678899999999888888865543
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.019 Score=51.31 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000156 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963 (2015)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i 963 (2015)
+.|+..|+.+|+.++...+..+.+|...++|.++..|.|.+..||.+|..||..+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3688999999999888888899999999999999999999999999999998753
|
... |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.34 E-value=4.8 Score=52.84 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=83.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC-
Q 000156 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA- 983 (2015)
Q Consensus 905 ~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~- 983 (2015)
.|.|.++ --+.-|..+. ..-+..+..++..++..|....-.||..+..-.-.++.+-....++..+..-+..-
T Consensus 292 sdnnvkl--Ivldrl~~l~----~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~ 365 (948)
T KOG1058|consen 292 SDNNVKL--IVLDRLSELK----ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTH 365 (948)
T ss_pred cCcchhh--hhHHHHHHHh----hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcc
Confidence 4555443 3344444444 33345677888999999999999999998888888888777777777666554310
Q ss_pred ----CCChhHHHHHHHHHHHHhccCCCCCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000156 984 ----KLGAEGRKDLFDWLSKQLTGLSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2015)
Q Consensus 984 ----k~~p~~R~~~l~~L~~~l~~~~~~~~~~-~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G 1044 (2015)
..+-.-|+.++..+..+.-+++ ++. ..+.-++..+.|.|+.--...-..+...+..++
T Consensus 366 ~~e~d~~~~yRqlLiktih~cav~Fp---~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 366 NEESDDNGKYRQLLIKTIHACAVKFP---EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred ccccccchHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 0123458888888876654443 344 444458889999998644444444444444443
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.21 Score=64.22 Aligned_cols=194 Identities=16% Similarity=0.198 Sum_probs=126.6
Q ss_pred ccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhCh
Q 000156 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (2015)
Q Consensus 849 dIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~ 928 (2015)
|+...+-.-+++..++++-++|...++-|..++. .+..|....|..|...|..|+.|.-++|+.+|+.++..+-..-+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 3444444467788899999999999999998886 346677777888999999999999999999999998887632222
Q ss_pred hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC
Q 000156 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (2015)
Q Consensus 929 ~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~ 1008 (2015)
+=.+. ..++-.++ -.|+.+.||.+|..++.. -...+|.|.+-..+- +...|.-+...+...+ ... ..
T Consensus 160 ee~~v-~n~l~~li--qnDpS~EVRRaaLsnI~v------dnsTlp~IveRarDV--~~anRrlvY~r~lpki-d~r-~l 226 (892)
T KOG2025|consen 160 EECPV-VNLLKDLI--QNDPSDEVRRAALSNISV------DNSTLPCIVERARDV--SGANRRLVYERCLPKI-DLR-SL 226 (892)
T ss_pred CcccH-HHHHHHHH--hcCCcHHHHHHHHHhhcc------CcccchhHHHHhhhh--hHHHHHHHHHHhhhhh-hhh-hh
Confidence 11121 12222222 269999999998666532 122345555555443 3556777666665544 111 12
Q ss_pred ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCC
Q 000156 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (2015)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~ 1056 (2015)
....-+.-+-..|+|+.-+||.+++.++..=.-.+-...+...+..|+
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ld 274 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLD 274 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhc
Confidence 233444446679999999999999988864222222223455666665
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.16 Score=68.93 Aligned_cols=156 Identities=14% Similarity=0.143 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCCh
Q 000156 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGA 987 (2015)
Q Consensus 911 V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~k~~p 987 (2015)
-....+.++..++..||..+++ +-..+|.++.++......+|.++..|+..+..... +..+++.+...+.+- ..
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~--~~ 868 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL--DK 868 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch--hh
Confidence 5556778888888899999988 77889999999999999999999999999998754 233444555555432 12
Q ss_pred hHHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhH-------HHHHhccCCh
Q 000156 988 EGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET-------IEKNLKDIQG 1057 (2015)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~-------~~~~l~~L~~ 1057 (2015)
-.|+.....+-.++..... .+-..-+++|++.++.|....||.+|.+++..++..++.+. |.+.+-..+.
T Consensus 869 ~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke 948 (1549)
T KOG0392|consen 869 FVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKE 948 (1549)
T ss_pred HhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHH
Confidence 2343333333333332221 23334567789999999999999999999999999988664 3333433334
Q ss_pred HHHHHHHHHHhh
Q 000156 1058 PALALILERIKL 1069 (2015)
Q Consensus 1058 ~~~~~i~~~l~k 1069 (2015)
..++.|+.+++.
T Consensus 949 ~erkFLeqlldp 960 (1549)
T KOG0392|consen 949 EERKFLEQLLDP 960 (1549)
T ss_pred HHHHHHHHhcCc
Confidence 445555555544
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.1 Score=57.15 Aligned_cols=146 Identities=16% Similarity=0.043 Sum_probs=95.2
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~ 935 (2015)
+.++..+.+.+..+|..++..+... . .+-...|...|+|.+..|+..|+.+++.+...
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r------~------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------- 177 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAH------R------HDPGPALEAALTHEDALVRAAALRALGELPRR---------- 177 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhh------c------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------
Confidence 3567778888999998887555431 1 22345677778899999999999999987632
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHH
Q 000156 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2015)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2015)
..+|.+...+.|.++.||.+|..++..+ |-..-++.+....... ++..+..+..++... .....+.
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~--------~~~~a~~ 243 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA--------GGPDAQA 243 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC--------CchhHHH
Confidence 3455677779999999999999888444 4344444444433322 233444444444321 1125566
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHH
Q 000156 1016 PASIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 1016 pl~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
.|...+.|.. ||..+..+++.+
T Consensus 244 ~L~~ll~d~~--vr~~a~~AlG~l 265 (410)
T TIGR02270 244 WLRELLQAAA--TRREALRAVGLV 265 (410)
T ss_pred HHHHHhcChh--hHHHHHHHHHHc
Confidence 6777777755 888887777643
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=94.94 E-value=3.3 Score=52.87 Aligned_cols=149 Identities=15% Similarity=0.060 Sum_probs=97.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
.+...+.|.+..+|.+|+..+..+-. .+....|...+.|.|..|+..|+..+..+. . +.
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG----~------~~ 209 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAG----S------RL 209 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC----C------Hh
Confidence 45566778899999999999986532 445666777799999999999998876543 2 12
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHH
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (2015)
-...++..+.+....++..+...+. ..|-+..++.|...++++ .+|..++.-+... .....+.+
T Consensus 210 A~~~l~~~~~~~g~~~~~~l~~~la----l~~~~~a~~~L~~ll~d~----~vr~~a~~AlG~l--------g~p~av~~ 273 (410)
T TIGR02270 210 AWGVCRRFQVLEGGPHRQRLLVLLA----VAGGPDAQAWLRELLQAA----ATRREALRAVGLV--------GDVEAAPW 273 (410)
T ss_pred HHHHHHHHHhccCccHHHHHHHHHH----hCCchhHHHHHHHHhcCh----hhHHHHHHHHHHc--------CCcchHHH
Confidence 2344454455555555544433332 236667888888888754 4677777666532 22456777
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcChhH
Q 000156 1017 ASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (2015)
Q Consensus 1017 l~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~ 1047 (2015)
++..++|.- +|..|.+++ ..+.|-+.
T Consensus 274 L~~~l~d~~--~aR~A~eA~---~~ItG~~l 299 (410)
T TIGR02270 274 CLEAMREPP--WARLAGEAF---SLITGMDV 299 (410)
T ss_pred HHHHhcCcH--HHHHHHHHH---HHhhCCCc
Confidence 888887765 776666655 44566543
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.44 Score=51.34 Aligned_cols=110 Identities=15% Similarity=0.283 Sum_probs=82.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+.+.||. ++-.+..++.. ++..-.+.+.+|++||+..|.+|+..||.++..+++.+|..|... .+.|+.
T Consensus 14 l~~~dw~----~ileicD~In~-----~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWE----AIQAFCEQINK-----EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHH----HHHHHHHHHHc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 3456885 44455555542 233336899999999999999999999999999999999999754 366888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 000156 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (2015)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L 980 (2015)
.+++.+.. ....|++-+...+..|...++-++-+......|
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~~L 131 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYDML 131 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 88888853 467899999999999999876333333333334
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.43 Score=59.54 Aligned_cols=171 Identities=21% Similarity=0.219 Sum_probs=116.5
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~ 935 (2015)
..+++.+.+.+|-+|..+...+..+- ..+.++.|...+.|.+..|+..|..+++.+. .+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 46778889999999999987754332 2578899999999999999999988655432 24
Q ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCC--------Ch--hHHHHHHHHHHHHhccC
Q 000156 936 GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL--------GA--EGRKDLFDWLSKQLTGL 1004 (2015)
Q Consensus 936 ~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~--------~p--~~R~~~l~~L~~~l~~~ 1004 (2015)
..++.++..|. |.+..||..+..+|..+...-. +..+...+.+... .+ .+|..+..-+...
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~---- 176 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL---- 176 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----
Confidence 56777888777 7999999999999988765443 3444555554310 01 2454444444421
Q ss_pred CCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc--ChhHHHHHhccCChHH
Q 000156 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG--GQETIEKNLKDIQGPA 1059 (2015)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~--G~~~~~~~l~~L~~~~ 1059 (2015)
.....+.++...+.|...+||.+|..+++.+.... ..+.+.+.+..-....
T Consensus 177 ----~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 177 ----GDPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEV 229 (335)
T ss_pred ----CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHH
Confidence 22445666888999999999999999998876653 2233444443333333
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.79 E-value=31 Score=49.29 Aligned_cols=51 Identities=27% Similarity=0.279 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--cCchhhHHHHHHHHhcC
Q 000156 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVPYVTTALTDA 983 (2015)
Q Consensus 933 ~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~--~gl~~ll~~l~~~L~~~ 983 (2015)
.+..+++.+++++-|..-.+|..|++.+.-+.+. ++.-..+|++...-.++
T Consensus 1336 i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL~Tdp 1388 (1692)
T KOG1020|consen 1336 IMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIALETDP 1388 (1692)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheeecCCh
Confidence 4567889999999999999999999999888765 35566778777555444
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.19 Score=68.14 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHH
Q 000156 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (2015)
Q Consensus 300 keR~eaL~~L~~l~~--~~ki~~~~y~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 374 (2015)
-+|+.|...|.-+.. ++.+. ..|..+-..|.+.+. |.|- -....+..+..++..++..+.+ .-..+|.++..
T Consensus 748 ~errgael~L~~l~~~fg~sl~-~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLA-AKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHH-HhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 468877777766653 22221 224445555555554 3341 3344567777777778887877 77899999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhcCC-ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHH
Q 000156 375 LKEKKPTVAESLTQTLQAMHKAGCL-NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (2015)
Q Consensus 375 lkdkk~~V~~aa~~aL~al~~~~~~-~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 453 (2015)
....-..+|-++..|+..+++.+|. ....+++.+..-++.-.--+|++....+..++.......+.++..-+++.+..+
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 9999999999999999999986221 123345555555555555566666665555565444334556778899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCchH-------HHHHHHhccHHHHHHHHHHHhc
Q 000156 454 LNDGTPEVRDAAFSVLAAIAKSVGMRP-------LERSIEKLDDVRRNKLSEMIAG 502 (2015)
Q Consensus 454 L~Ds~~~VR~aA~~al~~l~~~~Ge~~-------~~~~l~~Ld~~~~kkI~e~~~~ 502 (2015)
+.|....||++|.+++..+..+++.+. +...+-...+.-++.|+..++.
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldp 960 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDP 960 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCc
Confidence 999999999999999999999987532 3333333334445556665543
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.41 E-value=11 Score=49.40 Aligned_cols=131 Identities=14% Similarity=0.065 Sum_probs=92.9
Q ss_pred ChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCch
Q 000156 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLD 970 (2015)
Q Consensus 892 ~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2015)
.+..-+..|.+.|.+...+++-.|++.+..|+.. +... ..++.-.-.++..|+ +..-.||+-|..-|-+|+..-..+
T Consensus 326 ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~-davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak 403 (938)
T KOG1077|consen 326 LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSI-DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK 403 (938)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchH-HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH
Confidence 3456667778888888899999999988888876 3222 334444777888898 899999999999999999988889
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCC-hhhhHHHHHhhcCCCCh
Q 000156 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-AAHLLKPASIAMTDKSS 1026 (2015)
Q Consensus 971 ~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~-~~~ll~pl~~~L~D~~~ 1026 (2015)
.++..+..+|.+. .+..|.++.--++-.-+++.++-. ..+.+.-++..-.|-+.
T Consensus 404 ~IV~elLqYL~tA--d~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs 458 (938)
T KOG1077|consen 404 QIVAELLQYLETA--DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS 458 (938)
T ss_pred HHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc
Confidence 9999999999876 367888877665544444443322 23333334444444433
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.35 E-value=13 Score=50.57 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHH----HHHHHhh--c
Q 000156 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVE----DVKTSVK--N 414 (2015)
Q Consensus 342 ~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~~l~~il~----~l~~~L~--~ 414 (2015)
+-.++..|+.+|..+|..|.+.....+=++++++.+....|++.+..|+.+++.+ +..+++.++. .+..++. -
T Consensus 565 ~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L 644 (1014)
T KOG4524|consen 565 VCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRL 644 (1014)
T ss_pred hhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHh
Confidence 3445788999999999999999999999999999999999999999999999987 2233555442 3333322 1
Q ss_pred CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCC
Q 000156 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458 (2015)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~ 458 (2015)
+...+-..+-..+..++...+.. ..+++++++..+.+.++--+
T Consensus 645 ~~~~~s~~~~~Vl~vVl~~s~~~-~i~~l~dvvq~i~~~lD~yH 687 (1014)
T KOG4524|consen 645 NTSGMSPRVPDVLMVVLQYSDYG-TIPNLKDVVQTIFKLLDYYH 687 (1014)
T ss_pred ccCCCCchhHHHHHHHhhcCCCC-chhhHHHHHHHHHHHHHHhc
Confidence 11111112223444444444333 23556777777777664333
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.55 Score=50.98 Aligned_cols=100 Identities=21% Similarity=0.351 Sum_probs=78.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+...||.. +-.|...+. .. +..-.+.+.+|++||...|.+|+..||.++..+++.+|..|... .+.|+.
T Consensus 13 l~~~dw~~----il~icD~I~---~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGL----ILDVCDKVK---SD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHH----HHHHHHHHh---cC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 34568843 334444443 11 23347899999999999999999999999999999999999754 466888
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCch
Q 000156 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLD 970 (2015)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2015)
.+.+.+.+ ....|++-+...+..|.....-+
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 88888888 67889999999999999887633
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.06 Score=42.14 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1014 LKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1014 l~pl~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
++.++++++|++++||.+|..+|+.+.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45688999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=10 Score=51.58 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=61.5
Q ss_pred hhhccCChHHHHHHHHHHHH---Hh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcc-hhhhHh
Q 000156 292 EGVKATKWSERKDAVAELTK---LA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF-SGSSRF 366 (2015)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~---l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f-~~~~~~ 366 (2015)
..+++++-..|.++|+-|.- ++ ..+...-.-.+...+.+..++.+.|.-++..|+.||..|+..-|.=. .++.+.
T Consensus 810 ~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~d 889 (1014)
T KOG4524|consen 810 HLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLED 889 (1014)
T ss_pred HHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34688999999999998754 23 33332222344555667778889999999999999999997655322 266777
Q ss_pred HHHHHHHHhccC
Q 000156 367 LLPVLLEKLKEK 378 (2015)
Q Consensus 367 llp~LL~klkdk 378 (2015)
++|.+-..|.+.
T Consensus 890 vlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 890 VLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHH
Confidence 888777666554
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.23 E-value=15 Score=48.28 Aligned_cols=307 Identities=17% Similarity=0.162 Sum_probs=177.4
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCCCcChhHHHh
Q 000156 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILK 171 (2015)
Q Consensus 94 v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~--~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~ 171 (2015)
|+..|-....+.++.-.-.|..|+-.+=+.+-.+.+.+.+-+.+- .--+=+..-+-.+|..+++.+ +..+++.....
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s-pDl~~~~~W~~ 190 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS-PDLVNPGEWAQ 190 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC-ccccChhhHHH
Confidence 444444342333455556677766655555545555555544432 122334445556666677764 34678888899
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC---------CCC---Cccchh
Q 000156 172 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT---------ARP---TRKIRA 239 (2015)
Q Consensus 172 ~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~---------~~P---~R~~rs 239 (2015)
.+..+|+|.+=.|-.++.+|+..|.++..+. .+. --+-++..|..-.-...-. +.| +..+|-
T Consensus 191 riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~-yk~-----~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rl 264 (938)
T KOG1077|consen 191 RIVHLLDDQHMGVVTAATSLIEALVKKNPES-YKT-----CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRL 264 (938)
T ss_pred HHHHHhCccccceeeehHHHHHHHHHcCCHH-Hhh-----hHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHH
Confidence 9999999999999999999999999888653 222 2233345554332221100 111 011121
Q ss_pred hhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHH---HHHHHHHHhcCC
Q 000156 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKD---AVAELTKLASTK 316 (2015)
Q Consensus 240 ~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~e---aL~~L~~l~~~~ 316 (2015)
-+.- |.. .+.+. -.--.+.. ..|+.|.. +.-.++|-+.+-. .|-+...++.+-
T Consensus 265 Lq~~------p~~--~D~~~---------r~~l~evl--~~iLnk~~-----~~~~~k~vq~~na~naVLFeaI~l~~h~ 320 (938)
T KOG1077|consen 265 LQIY------PTP--EDPST---------RARLNEVL--ERILNKAQ-----EPPKSKKVQHSNAKNAVLFEAISLAIHL 320 (938)
T ss_pred HHhC------CCC--CCchH---------HHHHHHHH--HHHHhccc-----cCccccchHhhhhHHHHHHHHHHHHHHc
Confidence 1110 000 00000 00000000 02222221 1123455554432 233333444333
Q ss_pred CCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcch-hhhHhHHHHHHHHhc-cCcHHHHHHHHHHHHHHH
Q 000156 317 RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMH 394 (2015)
Q Consensus 317 ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klk-dkk~~V~~aa~~aL~al~ 394 (2015)
.-.+.-+..-+..|.+.|.+...+++..|+.-+..|+.. .|. ..++.-.-.++..++ |+...||.-+...|-+++
T Consensus 321 D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mc 397 (938)
T KOG1077|consen 321 DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC 397 (938)
T ss_pred CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh
Confidence 333445677778888888866666888887777777654 443 234555777888898 999999999999999998
Q ss_pred HhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000156 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (2015)
Q Consensus 395 ~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~ 436 (2015)
.. .....|+++++..+.+-.+++|++...=++.+.++...
T Consensus 398 D~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 398 DV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred ch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 75 56788999999999999999999988777776666543
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.19 E-value=1.1 Score=56.64 Aligned_cols=202 Identities=17% Similarity=0.189 Sum_probs=130.6
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
+-..++.+.++++-++|+..++-|.-+.. +-+.|....|.-|...|..|+-|..+.|+.+|+.++..+-.--+.+ +..
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~ 169 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENR 169 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHH
Confidence 34467788999999999999998887775 3355655567778888899999999999999999999877444433 233
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChh
Q 000156 934 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAA 1011 (2015)
Q Consensus 934 ~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~ 1011 (2015)
...++-.++ -.|....||.+|.- +-.+..- ..|.|.+-..+- +..-|.-+...+ ++.++.. ....
T Consensus 170 ~~n~l~~~v--qnDPS~EVRr~all--ni~vdns----T~p~IlERarDv--~~anRr~vY~r~---Lp~iGd~~~lsi~ 236 (885)
T COG5218 170 IVNLLKDIV--QNDPSDEVRRLALL--NISVDNS----TYPCILERARDV--SGANRRMVYERC---LPRIGDLKSLSID 236 (885)
T ss_pred HHHHHHHHH--hcCcHHHHHHHHHH--HeeeCCC----cchhHHHHhhhh--hHHHHHHHHHHH---hhhhcchhhcccc
Confidence 333333332 36888899999732 2222222 234444444432 344455555443 4444321 1223
Q ss_pred hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000156 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (2015)
Q Consensus 1012 ~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~ 1070 (2015)
..+.-+--.|.|+.-+||+++..++..-...--.-.+...+..|+-+..+.+..++++.
T Consensus 237 kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~ 295 (885)
T COG5218 237 KRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGV 295 (885)
T ss_pred ceehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33334445899999999999998887544433333456677888877777666666654
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.18 E-value=13 Score=49.52 Aligned_cols=51 Identities=18% Similarity=0.052 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHhccCCCCCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000156 987 AEGRKDLFDWLSKQLTGLSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (2015)
Q Consensus 987 p~~R~~~l~~L~~~l~~~~~~~~~~-~ll~pl~~~L~D~~~~VR~aA~~~L~~l~ 1040 (2015)
..+|.++...|++... . ...+. .+..-+..|+.|++-+||+.|..++..+-
T Consensus 480 ~ivRaaAv~alaKfg~--~-~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 480 AIVRAAAVSALAKFGA--Q-DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhHHHHHHHHHHHhc--C-CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 4678887777775441 1 12233 34444778999999999999999888765
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.15 E-value=23 Score=48.12 Aligned_cols=165 Identities=18% Similarity=0.106 Sum_probs=95.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHH-HHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~-~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ 940 (2015)
+.+++-+.|.+|+..+-..+... +++..++. .++... -.|..+....=-.+...++.-+ .-+...+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G------~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P----~~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG------EDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP----ELALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH----HHHHHHHHH
Confidence 67788899999988877666422 22344433 333334 3344444433333333332221 334566788
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhh--hHHHHH
Q 000156 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH--LLKPAS 1018 (2015)
Q Consensus 941 ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~--ll~pl~ 1018 (2015)
+.+-|+|.++.+|..|+.+|..+-..-=++.+++.|...+.++ +|.+|..++--+.+.+.--.. ...+ .+..+.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld~~--l~~~~g~~~~l~ 172 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLDKD--LYHELGLIDILK 172 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcCHh--hhhcccHHHHHH
Confidence 8888899999999988888766522211233444455555555 578888877777766642211 1111 222344
Q ss_pred hhcCCCChHHHHHHHHHHHHHHH
Q 000156 1019 IAMTDKSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 1019 ~~L~D~~~~VR~aA~~~L~~l~~ 1041 (2015)
..+.|.++.|-.+|..+|..+..
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhch
Confidence 45578888888887777766653
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.67 Score=49.73 Aligned_cols=100 Identities=22% Similarity=0.357 Sum_probs=78.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh-h-hHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-S-KGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~-~-~~llp 939 (2015)
+.+.+|. ++-+|..++.. . +..-.+.+.+|+++|+..|.+++..||.++..+++..|..|... . +.++-
T Consensus 13 ~~~~D~~----~il~icd~I~~--~---~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWA----LNLELCDLINL--K---PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHH----HHHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 3456885 45556666642 1 33347899999999999999999999999999999999999754 3 36777
Q ss_pred HHHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000156 940 DILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (2015)
Q Consensus 940 ~ll~~L~D---~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2015)
.+++.+.. ....|+.-+...+..|....+-+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777765 46689999999999999988754
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.96 Score=55.21 Aligned_cols=166 Identities=19% Similarity=0.207 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHhccccCCCC----ChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh
Q 000156 870 RLESIEAVNKILEEANKRIQPA----GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (2015)
Q Consensus 870 R~eale~L~~ll~~a~~~I~~~----~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L 945 (2015)
-..|+|-.+.|.+ .|.+. ++.=....|...+.-+...|+-.-++++....--+|+.+.+.++.++..++..+
T Consensus 72 H~KaLevY~~IF~----~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGL 147 (307)
T PF04118_consen 72 HQKALEVYEYIFE----RIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGL 147 (307)
T ss_pred HHHHHHHHHHHHH----hcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccc
Confidence 3446666666654 23322 122334556667788888999999999999998999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC------C--------CCChh
Q 000156 946 GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDAA 1011 (2015)
Q Consensus 946 ~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~------~--------~~~~~ 1011 (2015)
-|....+.+.+...++.+...+|-+-+...++-.+.+ +|..|..++.|+.+.++... . .++..
T Consensus 148 ede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (307)
T PF04118_consen 148 EDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPG 224 (307)
T ss_pred ccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCcc
Confidence 9999999999999999999999988888888888764 47899999999999998866 1 12333
Q ss_pred hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000156 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 1012 ~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~ 1045 (2015)
-++..+..||+|.+-=|+..+-..| ..+++-
T Consensus 225 Llv~al~~~L~D~~iLVqR~~LDlL---l~~~PL 255 (307)
T PF04118_consen 225 LLVRALCACLEDENILVQRGFLDLL---LSHFPL 255 (307)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHH---HHhCCC
Confidence 4556688899999988887765544 555553
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=93.44 E-value=1.1 Score=48.52 Aligned_cols=100 Identities=19% Similarity=0.341 Sum_probs=77.2
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHHH
Q 000156 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSD 940 (2015)
Q Consensus 863 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp~ 940 (2015)
.+.+|. ..-.+..++.. . +..-.+.+.+|++||...|.+++..||.++..+++.+|..|... .+.|+..
T Consensus 18 ~~~dw~----~ileicD~In~--~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~ 88 (142)
T cd03569 18 GEPDLA----SILEICDMIRS--K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDE 88 (142)
T ss_pred CccCHH----HHHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHH
Confidence 455785 33445555542 1 22237899999999999999999999999999999999998753 4567777
Q ss_pred HHHHhC-CCcHHHHHHHHHHHHHHHHhcCchh
Q 000156 941 ILKCLG-DNKKHMRECTLTVLDAWLAAVHLDK 971 (2015)
Q Consensus 941 ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~~ 971 (2015)
+.+.+. .....|++-+...+..|....+-+.
T Consensus 89 l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (142)
T cd03569 89 LKDLIKTTKNEEVRQKILELIQAWALAFRNKP 120 (142)
T ss_pred HHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 777776 4566799999999999999886443
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.36 Score=64.05 Aligned_cols=146 Identities=17% Similarity=0.139 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhh----hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000156 323 FTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLR----THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (2015)
Q Consensus 323 y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~----~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (2015)
|+++++.|...+. +... . +..+..|+..++ .-.-|....++|-||+.+.-....|+-++..++..+...
T Consensus 865 F~~ivP~l~~~~~t~~~~~--K---~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQ--K---HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHhhHHHHHHHhccCCccc--h---hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 5666666666554 1111 1 123333333333 224578889999999999999999999999999876654
Q ss_pred -c---CCChHhHHHHHHHHh-hcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000156 397 -G---CLNLVDVVEDVKTSV-KNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (2015)
Q Consensus 397 -~---~~~l~~il~~l~~~L-~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al 469 (2015)
+ +.+++-++|.++.-- .++| -.||..+++.|..+.+..|...+..+-+.++.++.++|+|+..-||+.|..+=
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1 234566777776533 3554 57999999999988777887777788899999999999999999999999876
Q ss_pred HHHH
Q 000156 470 AAIA 473 (2015)
Q Consensus 470 ~~l~ 473 (2015)
....
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 5544
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=93.30 E-value=1 Score=48.28 Aligned_cols=101 Identities=22% Similarity=0.393 Sum_probs=76.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+.+.+|. ..-.+..++.. . +..-.+.+.+|++||...|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 13 l~~~dw~----~~l~icD~i~~---~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWE----LILEICDLINS---T--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHH----HHHHHHHHHhC---C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 4456885 33445555532 2 23347899999999999999999999999999999999999754 355777
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHHHHhcCchh
Q 000156 940 DILKCLGDNKK--HMRECTLTVLDAWLAAVHLDK 971 (2015)
Q Consensus 940 ~ll~~L~D~k~--~Vr~aa~~aL~~i~~~~gl~~ 971 (2015)
.+.+.+.++.. .|++.+...+..|.....-++
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~ 117 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFKNDP 117 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777766432 399999999999999875333
|
Unpublished observations. Domain of unknown function. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.27 E-value=2.3 Score=57.25 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=112.2
Q ss_pred hccCChHHHHHHHHHHHH-HhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHH
Q 000156 294 VKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~-l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (2015)
+.+++=++|++|++.+.+ +..+. |...++.-+.|-+.--|..+....---+...++.= ...+...++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~-----dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~----P~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE-----DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK----PELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHH
Confidence 677788899999998755 44433 35666665555555445445444433333333321 145778899999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-HHHHHH
Q 000156 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 451 (2015)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~p~l~ 451 (2015)
+-+.|+++.+|-.|..++..+=.. -=+..+++.|...+.|+++.||..++-.+..+++.-. .. +... .+..+.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l---~~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DL---YHELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hh---hhcccHHHHHH
Confidence 999999999998776666544221 1123456667788889999999999999998886422 11 1233 455677
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHH
Q 000156 452 ECLNDGTPEVRDAAFSVLAAIAK 474 (2015)
Q Consensus 452 k~L~Ds~~~VR~aA~~al~~l~~ 474 (2015)
.++.|++|.|-.+|..+|..+..
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhch
Confidence 78889999998888888766653
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=93.17 E-value=15 Score=44.12 Aligned_cols=186 Identities=11% Similarity=0.145 Sum_probs=125.4
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHH
Q 000156 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (2015)
Q Consensus 866 ~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL--~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~ 943 (2015)
+|..=..++..+..++. . +.+.+.....++..+.+.. ..--...|....+++..+...-...+......++..+++
T Consensus 53 D~~~~~~~l~gl~~L~~-~-~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 53 DHACVQPALKGLLALVK-M-KNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQ 130 (262)
T ss_pred cHhhHHHHHHHHHHHHh-C-cCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHH
Confidence 44444455677777774 2 4455544456666665533 233445778888888888877666666666778888888
Q ss_pred HhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-------cCCC-Ch--hHHHHHHHHHHHHhccCCCCCChhh
Q 000156 944 CLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-------DAKL-GA--EGRKDLFDWLSKQLTGLSGFPDAAH 1012 (2015)
Q Consensus 944 ~L~-D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~-------~~k~-~p--~~R~~~l~~L~~~l~~~~~~~~~~~ 1012 (2015)
... ++.+-----+..-+..+.....++.+.+.+.+.+. .+.. +| -.|.++-.-|..++... +.+.+
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~---~~fa~ 207 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST---PLFAP 207 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc---HhhHH
Confidence 774 55565555556666677777777777776666654 1110 11 35677777787777633 34555
Q ss_pred hHHH-HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCC
Q 000156 1013 LLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (2015)
Q Consensus 1013 ll~p-l~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~ 1056 (2015)
.+-| ++..|....+.|+.-+-+.|......+|.+.+.++...+=
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw 252 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIW 252 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 5555 8889999999999999999999999999999988876553
|
|
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.5 Score=51.18 Aligned_cols=108 Identities=29% Similarity=0.510 Sum_probs=78.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+.+.+|. ++-.|.++++. . +..-.+.+.+|+++|...|.+++..||.++..+++..|..|... .+.|+.
T Consensus 18 ~~~~Dw~----~~l~icD~i~~---~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~ 88 (140)
T PF00790_consen 18 LPSPDWS----LILEICDLINS---S--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLD 88 (140)
T ss_dssp SSS--HH----HHHHHHHHHHT---S--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCCHH----HHHHHHHHHHc---C--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHH
Confidence 4556884 34445555542 2 33347899999999999999999999999999999999999764 355777
Q ss_pred HHHHHhCCCcH--H--HHHHHHHHHHHHHHhcCchhhHHHHHH
Q 000156 940 DILKCLGDNKK--H--MRECTLTVLDAWLAAVHLDKMVPYVTT 978 (2015)
Q Consensus 940 ~ll~~L~D~k~--~--Vr~aa~~aL~~i~~~~gl~~ll~~l~~ 978 (2015)
.+.+.+.++.. . |++.+...|..|....+-+.=++.+.+
T Consensus 89 ~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~ 131 (140)
T PF00790_consen 89 ELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQD 131 (140)
T ss_dssp HHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHH
T ss_pred HHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHH
Confidence 77776665433 2 899999999999999864444444443
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.05 E-value=3.8 Score=48.87 Aligned_cols=302 Identities=16% Similarity=0.131 Sum_probs=168.1
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHh-ccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~-a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
|.+.+.+-+.+-.....|+-++++++.. .++.|++-.-.-+++-|...+ .-.+..+.-.|.=++..++.+....-+-.
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 4677777788888889999999999973 455666643344566666666 44455666777777888876554321111
Q ss_pred h-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh-cCc------hhhHHHHHHHHhcCCCChhHH-HHHHHHHHHHhccC
Q 000156 934 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAA-VHL------DKMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGL 1004 (2015)
Q Consensus 934 ~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~-~gl------~~ll~~l~~~L~~~k~~p~~R-~~~l~~L~~~l~~~ 1004 (2015)
+ -.-+|.++..|.++...||+.+.=+|+.++.- .++ -..++.+...|.+.. +++. ..-+.|....+..-
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCC
Confidence 1 13578999999999999999999998877632 111 112333444444322 2222 33456655555432
Q ss_pred CC-CCCh---hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCC
Q 000156 1005 SG-FPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (2015)
Q Consensus 1005 ~~-~~~~---~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~ 1080 (2015)
.. .+++ ...++.+.+.+.-++++|-.-|.-++..+.- ...+.+... |+......+.+.+-....
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD-g~~E~i~av---ld~g~~~RLvElLs~~sa-------- 299 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD-GPNEKIQAV---LDVGIPGRLVELLSHESA-------- 299 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc-CcHHHHHHH---HhcCCcHHHHHHhcCccc--------
Confidence 22 3443 3445557788888888887766555543321 111222211 111111223333211000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhhhh---------hcccCCCChHHHhhhhhcccc
Q 000156 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQA---------LLNVKDSNKEDRERMVVRRFK 1151 (2015)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~k~~R~~~~~~k~~ 1151 (2015)
.+.+++.|+. ....+ +.+.+++. ++.+.++.|+ ++|+.. =|.
T Consensus 300 -------------~iqtPalR~v--GNIVT------------G~D~QTqviI~~G~L~a~~~lLs~~ke-~irKEa-CWT 350 (526)
T COG5064 300 -------------KIQTPALRSV--GNIVT------------GSDDQTQVIINCGALKAFRSLLSSPKE-NIRKEA-CWT 350 (526)
T ss_pred -------------cccCHHHHhh--cCeee------------cCccceehheecccHHHHHHHhcChhh-hhhhhh-hee
Confidence 0111111110 00000 01122222 1223333333 554332 377
Q ss_pred ccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCc
Q 000156 1152 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200 (2015)
Q Consensus 1152 f~~p~~e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~ 1200 (2015)
...-+...+|+.+.-|..-+-+-|+..|-+.||+.+.+|.=.+.....+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6665566677888888888888899999999999999988877766544
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.47 E-value=18 Score=51.98 Aligned_cols=236 Identities=15% Similarity=0.133 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchh------hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHH
Q 000156 663 VIEVINYLAATATKFPKKCVVLCLLGISERVADIK------TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 736 (2015)
Q Consensus 663 ~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K------~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~ 736 (2015)
.++++..++...-... ..+|..|+.+++.+. -+..|..++..++.+..+. +.+.+...+...+. . ..
T Consensus 164 ~~~i~~~li~e~d~v~----~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~-i~~f~~~~~~~~~s-~-~~ 236 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDTVQ----SELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDT-IANFLNSCLTEYKS-R-QS 236 (1266)
T ss_pred HHHHHHHHHHhhccch----HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchh-HHHHHHHHHhhccc-c-cc
Confidence 6677776666432222 345555666665542 2455555666665554432 33333333322221 1 11
Q ss_pred HHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhc
Q 000156 737 EGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (2015)
Q Consensus 737 ~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k 815 (2015)
-.-.-.+++|-+.-.-.. -+-.+++.+..- |.+.+-.+|-.|..++|.|+...+..+. + .
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l~----~--------------~ 297 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQLS----E--------------T 297 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhhc----c--------------c
Confidence 111122233322211000 123577777665 8889999999999999999865442210 0 0
Q ss_pred CCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh
Q 000156 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895 (2015)
Q Consensus 816 ~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~e 895 (2015)
...+-..|+..+.|..-.+|.++++....++.. ++.+... ..
T Consensus 298 -----------------------------------~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~~--~~ 339 (1266)
T KOG1525|consen 298 -----------------------------------YDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAKA--ST 339 (1266)
T ss_pred -----------------------------------chHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-CchhhhH--HH
Confidence 001335788899999999999999999998863 2322221 34
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000156 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (2015)
Q Consensus 896 L~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~ 966 (2015)
+..+|+.+..|.+..++...+.....++ .-.+ .+...++-.+.+++.|++..||..|+..|..+.++
T Consensus 340 ~~~~l~~~~~D~~~rir~~v~i~~~~v~---~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 340 ILLALRERDLDEDVRVRTQVVIVACDVM---KFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHhhcCChhhhheeeEEEEEeehh---Hhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 5666677777877777654433222211 1111 22233677778899999999999999999999985
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.19 E-value=4.8 Score=52.29 Aligned_cols=184 Identities=20% Similarity=0.241 Sum_probs=121.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhChhHHh-hhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000156 767 GLQSSAAATRNATIKLLGALHKFVGPDIKG-FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2015)
Q Consensus 767 gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~-~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2015)
||+.+|.+||..|..++..+|-..|++... -++. .+++.|.
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~-------i~~kQf~------------------------------- 223 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDS-------IIQKQFE------------------------------- 223 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccHHHHHH-------HHHHHHH-------------------------------
Confidence 489999999999999999999888887531 1111 1122221
Q ss_pred CCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHH
Q 000156 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVAS 924 (2015)
Q Consensus 846 prvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~ 924 (2015)
.+++.++|.--.+|-+|++.+.++...-=.-|.++...+++..+..-+ .|+-..|+....+.+..|+-
T Consensus 224 -----------~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~ 292 (1005)
T KOG1949|consen 224 -----------ELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD 292 (1005)
T ss_pred -----------HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc
Confidence 344555666667899999999888864322344555556665555544 68888999999998888763
Q ss_pred HhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--cCchhhHH--HHHHHHhcCCCChhHHHHHHHHHHHH
Q 000156 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2015)
Q Consensus 925 alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~--~gl~~ll~--~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2015)
.+...+.++.++|.+=-.|.|+...||-|+...|-.+-.+ ...-.+++ .+..-|..++ .+..|.-+.-.+..+
T Consensus 293 --np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~-~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 293 --NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDS-RPVSRRLVSLIFNSF 369 (1005)
T ss_pred --CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccc-cHHHHHHHHHHHHhh
Confidence 3555677889999999999999999999998888765432 23333433 3455555443 244444444444444
Q ss_pred hc
Q 000156 1001 LT 1002 (2015)
Q Consensus 1001 l~ 1002 (2015)
|+
T Consensus 370 lP 371 (1005)
T KOG1949|consen 370 LP 371 (1005)
T ss_pred cC
Confidence 43
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.89 E-value=2.2 Score=50.84 Aligned_cols=304 Identities=14% Similarity=0.135 Sum_probs=164.3
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHh--ccccchHHH--HHHHHHhcCCCCcccHH---HHHHHHHHHHHHHHHHcCC
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEA--VQNLDQSVE--ILVRLVCMLPGWSEKNV---QVQQQVIEVINYLAATATK 676 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~--~~~~~~~~~--~Lv~~L~~~pg~~DsN~---qV~~~~Le~l~~l~~~~~~ 676 (2015)
+.+.++|.|.+....+.|+-.+.+++.. ..+.+...+ ++.|+.. |-|.+. --++++. +++.++.....
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfve----fm~~~q~~mlqfEAaW-alTNiaSGtt~ 148 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVE----FMDEIQRDMLQFEAAW-ALTNIASGTTQ 148 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHH----HHHhcchhHHHHHHHH-HHhhhccCccc
Confidence 7888999999999999999999999865 233322211 2223221 122111 1111111 22333321111
Q ss_pred CchhHH-HHHHHHHHhhhcch--hhhHHHHHHHHHHHhhhC--hhHH-----HHHHHHHhhhCCC-hhHHHHHHHHHHHH
Q 000156 677 FPKKCV-VLCLLGISERVADI--KTRAHAMKCLTTFSEAVG--PGFI-----FERLYKIMKDHKN-PKVLSEGILWMVSA 745 (2015)
Q Consensus 677 ~~~~~~-~~il~~LveKlgD~--K~r~~a~~~L~~l~e~~~--~~~V-----l~~L~~~l~~~Kn-pKv~~~~l~~L~~l 745 (2015)
-++-.+ ...+|.++.-|.++ -+|+++.=+|..++.-.. -++| ++.++..+..++. -+...-+-..|+++
T Consensus 149 QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 149 QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 111111 23467777766664 478888878877765321 1233 3334444322221 23333444456666
Q ss_pred HHHhCCC--CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhh-hhccHHHHHHHHHHHhcCCCCCCC
Q 000156 746 VEDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKNPFEGTV 822 (2015)
Q Consensus 746 i~~fG~~--~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~ef~k~~~~~~p 822 (2015)
...-... --++...++.+.++ +-..+++|-.-|.-++.+|.......+...+ ..+++.+++.|..+-.++.. |
T Consensus 229 cRGknP~P~w~~isqalpiL~KL-iys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt--P- 304 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKL-IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT--P- 304 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC--H-
Confidence 5422211 12356678888888 8888998888887777766543333344444 34566666666554444321 1
Q ss_pred CCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000156 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2015)
Q Consensus 823 ~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~ 902 (2015)
..|-+-. - ..|.|.-..+-|..-..+.|...+++++-.+|+||--.+..|-.+....|+.-.-.+|++.|..
T Consensus 305 -alR~vGN------I-VTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ 376 (526)
T COG5064 305 -ALRSVGN------I-VTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH 376 (526)
T ss_pred -HHHhhcC------e-eecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHH
Confidence 1121100 0 0112222222232223456777788888899999977776665432223333222567888889
Q ss_pred ccccchHHHHHHHHHHHHHHHH
Q 000156 903 RLYDSNKNLVMATLITLGAVAS 924 (2015)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~ 924 (2015)
.|+-..-.+...||=++.....
T Consensus 377 lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 9988888999999987766543
|
|
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=91.86 E-value=1.3 Score=46.07 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHH-----H
Q 000156 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILK-----C 944 (2015)
Q Consensus 872 eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~--llp~ll~-----~ 944 (2015)
..+..|..++.+ .+....+++.+|.+||.+.|+.++..||.++..+++..|..|..++.. ++-.++. .
T Consensus 19 ~~i~~i~d~~~~-----~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~ 93 (115)
T cd00197 19 PLIMEICDLINE-----TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKL 93 (115)
T ss_pred HHHHHHHHHHHC-----CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccc
Confidence 455566666542 133468999999999999999999999999999999999999876533 3333332 1
Q ss_pred h-CCCcHHHHHHHHHHHHHHH
Q 000156 945 L-GDNKKHMRECTLTVLDAWL 964 (2015)
Q Consensus 945 L-~D~k~~Vr~aa~~aL~~i~ 964 (2015)
. .+....||+.+...+..|.
T Consensus 94 ~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 94 LGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred ccCCCChHHHHHHHHHHHHHh
Confidence 1 2456789999999998885
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.65 E-value=51 Score=42.48 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHh--hhcc-hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH---HHHHHHhhcCCh-
Q 000156 345 AIQAIGNLARGL--RTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVKNKVP- 417 (2015)
Q Consensus 345 A~~~l~~La~~L--~~~f-~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il---~~l~~~L~~Knp- 417 (2015)
|-.+|..|+..+ |+.| +..+..++=++++.|..+....|++.--++..+..- + ++++ ..|..-++.+.+
T Consensus 41 ~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~---t-edvlm~tssiMkD~~~g~~~ 116 (898)
T COG5240 41 ARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKL---T-EDVLMGTSSIMKDLNGGVPD 116 (898)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhc---c-hhhhHHHHHHHHhhccCCcc
Confidence 445666666654 5678 678999999999999999999999999999888653 1 3333 344455566777
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
.+|-.++.-|.+.+..... ..+-..+..+.-|+.+.+|.+|. ..-+..++.
T Consensus 117 ~~kp~AiRsL~~Vid~~tv-------~~~er~l~~a~Vs~~~a~~saal---v~aYhLlp~ 167 (898)
T COG5240 117 DVKPMAIRSLFSVIDGETV-------YDFERYLNQAFVSTSMARRSAAL---VVAYHLLPN 167 (898)
T ss_pred ccccHHHHHHHHhcCcchh-------hhHHHHhhhhccccchhhhhhHH---HHhhhhccc
Confidence 7888888888777654332 33444567788899999998875 333444443
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=91.04 E-value=2.4 Score=52.16 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhchhhhh--hHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--hhhHHHHHHHHhhcCChhhH
Q 000156 71 KALDALIAYLKAADADAGR--YAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAV 145 (2015)
Q Consensus 71 ~~leal~~~l~~~~~~~~~--~~~~v~~~LieK~l~-~k~~~k~~a~~~ll~~~E~~~--~~~v~~~L~~~~~~KnpKv~ 145 (2015)
+.|..+...+++...+... ....++..||-.++. ..+.+|+.|..|+=.++=++. ....+..+...+....+.+.
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 3566667777776533322 234788888888776 578999999999888886643 44556666777766688999
Q ss_pred HHHHHHHHHHHHHhCCCCcCh----------hHHHhhhhhhhcCCChhHHHHHHHHHHHHH
Q 000156 146 VPAIDVMFQALSEFGAKIIPP----------KRILKMLPELFDHQDQNVRASSKGLTLELC 196 (2015)
Q Consensus 146 ~~~l~~L~~~l~~fG~~~i~~----------k~il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (2015)
..|+.++.+++..||...+.- ..+++.+.+.+.+.++.||..|..-+..|.
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999999876532 358899999999999999999988888776
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=90.94 E-value=1.6 Score=48.41 Aligned_cols=146 Identities=12% Similarity=0.166 Sum_probs=92.4
Q ss_pred CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHH--hc
Q 000156 321 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK--AG 397 (2015)
Q Consensus 321 ~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~--~~ 397 (2015)
.+|.+|+..|.+.++ +.+..++.++++++|.|+. .+||....+..-.. +.. ..+....+.+.... ..
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~---~~~--~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGA-----LDPYKHKSIQKSLD---SKS--SENSNDESTDISLPMMGI 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-----cCcHHHhcccccCC---ccc--cccccccchhhHHhhccC
Confidence 468999999999998 8779999999999999873 34443332111111 100 01111111111111 10
Q ss_pred CCChHhHHH-----HHHHHhhcCC-hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000156 398 CLNLVDVVE-----DVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (2015)
Q Consensus 398 ~~~l~~il~-----~l~~~L~~Kn-p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~ 471 (2015)
..+.++..+ .+...|++++ ..-...+++.+..+|...+... ..+++.++|.+...+....+..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123344433 3444555544 4555567777777776655544 57789999999999999999999999988888
Q ss_pred HHHHhC
Q 000156 472 IAKSVG 477 (2015)
Q Consensus 472 l~~~~G 477 (2015)
+...++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 887653
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.91 E-value=5.8 Score=48.57 Aligned_cols=175 Identities=19% Similarity=0.213 Sum_probs=110.9
Q ss_pred CCChHHHHHHHHHHHHHHHh---ccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH-HHH
Q 000156 864 SPDWKVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG-VLS 939 (2015)
Q Consensus 864 d~~Wk~R~eale~L~~ll~~---a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~-llp 939 (2015)
+.+-..|..|++.|+.++.. |+..+. +|-+...|. .+++++..|+..|+.+|+..+..=.+--+...+. .+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~---~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLIS---LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhh---ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 33567788999999999874 322222 244455555 8999999999999999998886544333333222 667
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhc--CchhhHH-----HHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCC-h
Q 000156 940 DILKCLG-DNKKHMRECTLTVLDAWLAAV--HLDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-A 1010 (2015)
Q Consensus 940 ~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~--gl~~ll~-----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~-~ 1010 (2015)
.++..|. |..-.+|..|.-|+..++++- |.+.++. .+.++|+++..+...+.-++..+...+.......+ .
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7777776 444568899999999999885 4566655 57888887544566777777777777765543222 1
Q ss_pred hhhHHH--HHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1011 AHLLKP--ASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1011 ~~ll~p--l~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
..+..+ +.....--+.+++.++..++-.+...
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 222111 22222333445666666555544433
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=90.74 E-value=7.5 Score=47.65 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=110.5
Q ss_pred ccCChHHHHHHHHHHHHHhc--CCCCCC-CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhc-chhhhHhHHH
Q 000156 295 KATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLP 369 (2015)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~--~~ki~~-~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp 369 (2015)
..+.|.+-...|..|.+.++ .+.+.- ..=..+.+.|.+++. ..-.-|-..|+.+.+.+.+.++.+ +........|
T Consensus 21 ~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~ 100 (307)
T PF04118_consen 21 SSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSP 100 (307)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHH
Confidence 36899999999999988775 333322 334578889999998 777789999999999999888754 3444444555
Q ss_pred HHHHHhccCcHHHHH-----------------------------------------HHHHHHHHHHHhcCCChHhHHHHH
Q 000156 370 VLLEKLKEKKPTVAE-----------------------------------------SLTQTLQAMHKAGCLNLVDVVEDV 408 (2015)
Q Consensus 370 ~LL~klkdkk~~V~~-----------------------------------------aa~~aL~al~~~~~~~l~~il~~l 408 (2015)
+|+.-+.-....|+- .+...++.+... ++-+-+...+
T Consensus 101 GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~--v~~~~F~~~l 178 (307)
T PF04118_consen 101 GLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEA--VGDKYFWQCL 178 (307)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHh--cChhHHHHHH
Confidence 555544444444443 333333333221 1111122222
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHhcC-----------hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000156 409 KTSVKNKVPLVRSLTLNWVTFCIETSS-----------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (2015)
Q Consensus 409 ~~~L~~Knp~vR~~~l~~L~~~l~~~~-----------~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~ 471 (2015)
..++- .+|.+|..++.|+.+-+.... ...+...-..++.++..+++|.+--|+..+.+.|..
T Consensus 179 wl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 179 WLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 22221 578999999999988776543 111112235688899999999999998877776653
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=90.68 E-value=1.7 Score=48.97 Aligned_cols=133 Identities=20% Similarity=0.215 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHh-ChhhHHhhhHHHHHH------------HHHhCCCcHHHHHHHHHHHHHHHHhcC--------
Q 000156 910 NLVMATLITLGAVASAM-GPAVEKSSKGVLSDI------------LKCLGDNKKHMRECTLTVLDAWLAAVH-------- 968 (2015)
Q Consensus 910 ~V~~~Al~~l~~La~al-g~~f~~~~~~llp~l------------l~~L~D~k~~Vr~aa~~aL~~i~~~~g-------- 968 (2015)
+|++.|+.+++.+++.. ++.|..|-..|+|.- .-.+.|...-+|.+|..++.++.+...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 47899999999999994 566778888888855 335679999999999999999987542
Q ss_pred --------------chhhHH----HHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCC-hhhhHHHHHhhcCCCCh
Q 000156 969 --------------LDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPD-AAHLLKPASIAMTDKSS 1026 (2015)
Q Consensus 969 --------------l~~ll~----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~~~-~~~ll~pl~~~L~D~~~ 1026 (2015)
+..++- .+..+|+.++ ++..-..+++-++..+...+- ..+ +..++..+...+.+++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 111111 2344455443 345555677777766665543 223 34455557777889999
Q ss_pred HHHHHHHHHHHHHHHHc
Q 000156 1027 DVRKAAEACIVEILRAG 1043 (2015)
Q Consensus 1027 ~VR~aA~~~L~~l~~~~ 1043 (2015)
+||.++..|++.+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999999886543
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=90.59 E-value=1.3 Score=49.71 Aligned_cols=90 Identities=18% Similarity=0.136 Sum_probs=71.7
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH---HHHh
Q 000156 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI---AKSV 476 (2015)
Q Consensus 400 ~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l---~~~~ 476 (2015)
....++|.+.++|..+.-.-+--+.+-+..+++......+.++++++++.+..+|+-.+++|..++.++|..+ ...+
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 3456789899999876655555555555666665444557788999999999999999999999999999999 7889
Q ss_pred CchHHHHHHHhccH
Q 000156 477 GMRPLERSIEKLDD 490 (2015)
Q Consensus 477 Ge~~~~~~l~~Ld~ 490 (2015)
|+ ++.||+.+|-+
T Consensus 115 G~-aLvPyyrqLLp 127 (183)
T PF10274_consen 115 GE-ALVPYYRQLLP 127 (183)
T ss_pred hH-HHHHHHHHHHH
Confidence 96 48899887754
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.87 Score=59.46 Aligned_cols=185 Identities=18% Similarity=0.242 Sum_probs=129.0
Q ss_pred cccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhh
Q 000156 852 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (2015)
Q Consensus 852 ~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f 930 (2015)
..+.+-+++.++..+-.+|.--|+.+.+.+. .+.+.. -..+++.+..-+.|.|..++.++++++..||..+++.
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~----~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYID----HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhh----hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 3456678888899999999999888888875 455432 2578899999999999999999999999999999887
Q ss_pred HHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc---hhhHH-HHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000156 931 EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL---DKMVP-YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (2015)
Q Consensus 931 ~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl---~~ll~-~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2015)
..-..++-.+-..-.|....+|+-..-||..+...+.. ..++. .+..+++++- .|.-..+++.+.+ ..++..
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf-~paR~a~v~~l~a--t~~~~~ 479 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPF-VPARKAGVLALAA--TQEYFD 479 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCC-CCchhhhhHHHhh--cccccc
Confidence 33345566666666688889999999999988877531 22333 3455676652 2333344544443 222222
Q ss_pred CCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000156 1007 FPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 1007 ~~~~~-~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~ 1045 (2015)
..++. .+++-+...+.|.+..||..|..++..+....-.
T Consensus 480 ~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 480 QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 22333 3333366667999999999999988776655443
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.98 Score=60.18 Aligned_cols=143 Identities=20% Similarity=0.183 Sum_probs=106.7
Q ss_pred ccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccc-cCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChh
Q 000156 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANK-RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 929 (2015)
Q Consensus 851 s~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~-~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~ 929 (2015)
...+-|.+.+.+....--+|-.=++.|..++..-.+ -+.|. +..|++.|.+.|+=....|+..+++++..+..-.+.-
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~-~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQ-FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccc-hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 344556666666644444555566777777764322 23344 5889999999998788888899999999999999999
Q ss_pred hHHhhhHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHhcCCCChhHHHHHHHH
Q 000156 930 VEKSSKGVLSDILKCLGDNK---KHMRECTLTVLDAWLAAVHL-------DKMVPYVTTALTDAKLGAEGRKDLFDW 996 (2015)
Q Consensus 930 f~~~~~~llp~ll~~L~D~k---~~Vr~aa~~aL~~i~~~~gl-------~~ll~~l~~~L~~~k~~p~~R~~~l~~ 996 (2015)
...|+..++|.++..-.|++ ..||..|.+||+.+.+.++. +.++-.+.+.|.|+| --+|.++..-
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK--RlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK--RLVRKEAVDT 1018 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH--HHHHHHHHHH
Confidence 99999999999999888877 67999999999999997763 344455666666765 2567776543
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.16 E-value=3.3 Score=49.91 Aligned_cols=186 Identities=13% Similarity=0.146 Sum_probs=112.6
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
+.+.+++.+.|.+-|++..|--.|+.+...- ..+.+-.-..-++.|...|.|.-...+....-||..|+..-+...--.
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 4567888888889999888888887776431 111110001123455666788888888888888888876655442111
Q ss_pred hhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC
Q 000156 934 SKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (2015)
Q Consensus 934 ~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i~~~~g--l-----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~ 1005 (2015)
-..|+.+++..|.-.. ..+.=+|..+|..++.+.. . ..-+|.+.+.+.+.. -.++.++-.-++..--.-.
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p--vsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP--VSVQSEISACIAQLALNDN 408 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHhccc
Confidence 1246667777665333 3366677788888776431 1 223456666766653 3556655554443211111
Q ss_pred CCCCh--hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1006 GFPDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1006 ~~~~~--~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
....+ .-+++.++..+.|.+.+||.+|.++|..|...
T Consensus 409 ~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 11111 23445577788999999999999999877543
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.91 E-value=26 Score=47.28 Aligned_cols=198 Identities=16% Similarity=0.207 Sum_probs=122.6
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC-CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhh
Q 000156 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 797 (2015)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~-~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~ 797 (2015)
++..+..+ ..+-+-++.+++..|..+++..... .+....++..+... +.|.|+-|==.|++.++.|......++
T Consensus 729 ~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lcevy~e~i--- 803 (982)
T KOG4653|consen 729 LQEAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCEVYPEDI--- 803 (982)
T ss_pred HHHHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHHhcchhh---
Confidence 44444443 4667778999999999999854222 23455688888888 999999999899996666655444332
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHH
Q 000156 798 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAV 877 (2015)
Q Consensus 798 L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L 877 (2015)
-|.+.+..+.+-.+.+ .| ...|. =|.+
T Consensus 804 ----l~dL~e~Y~s~k~k~~------------------------------~d-----------------~~lkV--GEai 830 (982)
T KOG4653|consen 804 ----LPDLSEEYLSEKKKLQ------------------------------TD-----------------YRLKV--GEAI 830 (982)
T ss_pred ----HHHHHHHHHhcccCCC------------------------------cc-----------------ceehH--HHHH
Confidence 2222222222211110 00 00000 0233
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh-CCCcHHHHHHH
Q 000156 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECT 956 (2015)
Q Consensus 878 ~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L-~D~k~~Vr~aa 956 (2015)
.+++..- +.+....++-|...+...+.|+....+..+|..+|.++.........++-.++..++... .|....||.||
T Consensus 831 ~k~~qa~-Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaA 909 (982)
T KOG4653|consen 831 LKVAQAL-GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAA 909 (982)
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHH
Confidence 3333321 122222245666777777788888899999999999998886544445556666665544 58889999999
Q ss_pred HHHHHHHHHhcCchhhHHHH
Q 000156 957 LTVLDAWLAAVHLDKMVPYV 976 (2015)
Q Consensus 957 ~~aL~~i~~~~gl~~ll~~l 976 (2015)
...+..+...+| ..++|.+
T Consensus 910 v~li~~lL~~tg-~dlLpil 928 (982)
T KOG4653|consen 910 VHLLAELLNGTG-EDLLPIL 928 (982)
T ss_pred HHHHHHHHhccc-hhhHHHH
Confidence 999999888888 3334433
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=89.78 E-value=4.4 Score=49.78 Aligned_cols=126 Identities=16% Similarity=0.101 Sum_probs=91.2
Q ss_pred HHHHHHhhhcchhh--hHhHHHHHH-HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHH
Q 000156 350 GNLARGLRTHFSGS--SRFLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (2015)
Q Consensus 350 ~~La~~L~~~f~~~--~~~llp~LL-~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~ 426 (2015)
..+-+.....+.+. ...++..++ ..+..+.+.||+.+..||.-++-.+.......++-+...++.....+|..+++.
T Consensus 8 ~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~ 87 (298)
T PF12719_consen 8 QSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKA 87 (298)
T ss_pred HHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33333333344442 336666655 556777889999999999877654212234566777777876789999999999
Q ss_pred HHHHHHhcChhHHHHh--------hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 427 VTFCIETSSKAAVLKV--------HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 427 L~~~l~~~~~~~l~~~--------l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
+..++-.++...+... ...+...+.+.+.+.++++|..|.+++..+.-.
T Consensus 88 l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 88 LFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999988876544322 257888999999999999999999999988744
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.67 E-value=9.5 Score=50.90 Aligned_cols=176 Identities=18% Similarity=0.193 Sum_probs=117.8
Q ss_pred ChHHHHHHHHHHHHHhc--CCCCCC-CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhH-hHHHHHH
Q 000156 298 KWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLL 372 (2015)
Q Consensus 298 kWkeR~eaL~~L~~l~~--~~ki~~-~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~-~llp~LL 372 (2015)
+-..-.+|+.+|..++. +..-.. --...+++.|.++++ +.|.-+...||+||.+|+..+.....-.+. ..+|.++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 55566778888877552 222222 224689999999999 889999999999999999999877654333 5889999
Q ss_pred HHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhHHH-----HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000156 373 EKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVE-----DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (2015)
Q Consensus 373 ~klkd-kk~~V~~aa~~aL~al~~~~~~~l~~il~-----~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (2015)
+||-. .=-.|.+.+-+||..|-+. +..+|+. ..+..++==.-.+.+.++...+.|.....+..+ .++-+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ea 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEA 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHH
Confidence 98865 3445777777787777653 3334432 122222222223445566666666666555443 334667
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000156 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 447 ~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G 477 (2015)
+|.|...|.-.+..+-+..+-|+..+..-+-
T Consensus 337 lPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 337 LPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 8999999988888887888888876665543
|
|
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=89.62 E-value=2.3 Score=46.09 Aligned_cols=106 Identities=25% Similarity=0.372 Sum_probs=76.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~ll 938 (2015)
+...||.. .-.|.++++. . ...-.+.+.+|++||. ..|.+|+..||.++..+++.+|..|... .+.|+
T Consensus 14 l~~~dw~~----ileicD~In~--~---~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGL----NMEICDIINE--T---EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHH----HHHHHHHHhC--C---CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 34558854 3334444431 2 2224789999999997 4699999999999999999999999864 35677
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCchhhHHHH
Q 000156 939 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVHLDKMVPYV 976 (2015)
Q Consensus 939 p~-ll~~L~D---~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l 976 (2015)
.. +++.+.+ ....|+.-+...+..|.....-+.=++.+
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i 126 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGV 126 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHH
Confidence 76 6777754 33579999999999999887644333333
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=89.56 E-value=1.6 Score=47.33 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=65.2
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHhhhhhhhc-CCChhHHHHHHHHHHHHHHHhC
Q 000156 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFD-HQDQNVRASSKGLTLELCRWIG 200 (2015)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~-~~d~~VR~~a~~l~~ely~~lG 200 (2015)
++...+..|.+.+.++||+++.-++..|-.++++=|... +.-+.|+..|.+++. +.+..||+.+..++.+-+...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 467888999999999999999999999999999877632 344778888999886 6789999999999988887776
Q ss_pred C
Q 000156 201 K 201 (2015)
Q Consensus 201 ~ 201 (2015)
.
T Consensus 118 ~ 118 (142)
T cd03569 118 N 118 (142)
T ss_pred C
Confidence 4
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.51 E-value=1.3 Score=57.79 Aligned_cols=173 Identities=16% Similarity=0.119 Sum_probs=106.0
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhcchhhh
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y--~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~~ 364 (2015)
.|++.+.-+.=.||.+-...|...+ +..+.++ ..+...|...+. |+...+..-.+.+-..+.. ..|-
T Consensus 258 ~fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~------~eyq 328 (690)
T KOG1243|consen 258 LFLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE------EEYQ 328 (690)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc------cccc
Confidence 3555555555556655444444322 1222222 344455555444 5333333333332222221 2588
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000156 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2015)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~--~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2015)
..++|.|++.|+-....||--+-.=+..++.+- ..-.+.|+|.+..++.+.|+.+|..|+..+..++...++..+.
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln-- 406 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN-- 406 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc--
Confidence 889999999999999999988877777777761 1123578999999999999999999999999888776655432
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 443 l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
-+++..+.++-.|.++..|....-|++.+.
T Consensus 407 -~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 407 -GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred -HHHHHHHHhhCccccCcccccceeeecccc
Confidence 334445555555666666555555554433
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=89.35 E-value=73 Score=40.53 Aligned_cols=313 Identities=14% Similarity=0.156 Sum_probs=167.7
Q ss_pred hcCCChHHHHHHHHHHHHHhhccCC-CCchHHHhhhhh----hHhhhcC-------CcHHHHHHHHHHHHHHHHHhchh-
Q 000156 20 LLHKNWKVRNEANIDLAALCDSITD-PKDNRIRELGPL----FKKTVAD-------SNAPVQDKALDALIAYLKAADAD- 86 (2015)
Q Consensus 20 l~~k~WK~R~~ayeeL~~~~~~~~d-~~~~~~~~~~~~----~~k~v~D-------sN~~vqe~~leal~~~l~~~~~~- 86 (2015)
|.+.+=-.|.+||-.|...++.... ++.....+..++ ++.=+.. -+...-..||.++..|+-.....
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 4555667899999999999976532 222223332222 2222222 25566678899988888553221
Q ss_pred -hh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---------hhhhhHHHHHHH---HhhcCChhhHHHHHHHH
Q 000156 87 -AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---------EAVDVFLDVMEK---AIKNKVAKAVVPAIDVM 152 (2015)
Q Consensus 87 -~~-~~~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~---------~~~~~v~~~L~~---~~~~KnpKv~~~~l~~L 152 (2015)
.. .....++...++..-. ...-|..+...+-.+.+- +.++.++..+.. .+.++ -++.+.+.++
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~-~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~--si~~erL~i~ 158 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQN-PNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSK--SIISERLNIY 158 (372)
T ss_pred hCChHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCch--hHHHHHHHHH
Confidence 11 1122244444444222 122233343333322221 112223332221 12233 4788999999
Q ss_pred HHHHHHhCCCC-cChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000156 153 FQALSEFGAKI-IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (2015)
Q Consensus 153 ~~~l~~fG~~~-i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (2015)
..++.+|...- ......++.+...+-|..+.||..|..+..++-..+|++ ..+. +.+.+.++..-
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~---~~~s--------~~~~~~~~~~~--- 224 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN---KELS--------KSVLEDLQRSL--- 224 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh---HHHH--------HHHHHHhcccc---
Confidence 99999986632 234456777777778999999999999999998888863 1111 11111111000
Q ss_pred CCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhcc-CChHHHHHHHHHHH
Q 000156 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA-TKWSERKDAVAELT 310 (2015)
Q Consensus 232 ~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s-~kWkeR~eaL~~L~ 310 (2015)
.+.++. + .+. +.+.+.+.+ ++++.=-..--.+.
T Consensus 225 ~~~~~~------------------------------------------~---~~~-~~L~~mi~~~~~~~~a~~iW~~~i 258 (372)
T PF12231_consen 225 ENGKLI------------------------------------------Q---LYC-ERLKEMIKSKDEYKLAMQIWSVVI 258 (372)
T ss_pred ccccHH------------------------------------------H---HHH-HHHHHHHhCcCCcchHHHHHHHHH
Confidence 000000 0 000 111111222 11111111112223
Q ss_pred HHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcc---hhhhHhHHHHHHHHhccCcH-----H
Q 000156 311 KLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF---SGSSRFLLPVLLEKLKEKKP-----T 381 (2015)
Q Consensus 311 ~l~~~~ki~~-~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f---~~~~~~llp~LL~klkdkk~-----~ 381 (2015)
.++..+.+.. ..+.+.+....+++++.+..+...|..+=..+.-.+..+- ....+.++.++.-.++.++. .
T Consensus 259 ~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~ 338 (372)
T PF12231_consen 259 LLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEE 338 (372)
T ss_pred HHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHH
Confidence 3444443444 3457888999999999999999999999888888665442 34566677777777655432 4
Q ss_pred HHHHHHHHHHHHHH
Q 000156 382 VAESLTQTLQAMHK 395 (2015)
Q Consensus 382 V~~aa~~aL~al~~ 395 (2015)
++..+..++..++-
T Consensus 339 ~~~~ll~~l~~lly 352 (372)
T PF12231_consen 339 VWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHHHHHHhchHH
Confidence 56666666665553
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.08 E-value=5.2 Score=47.78 Aligned_cols=176 Identities=18% Similarity=0.176 Sum_probs=110.7
Q ss_pred hhhhcCCChhhhh-cCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHh-hhcC-CcHHHHHHHHHHHHHHHHHhc
Q 000156 8 LKEAKKLPWEDRL-LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVAD-SNAPVQDKALDALIAYLKAAD 84 (2015)
Q Consensus 8 ~~~~~~lpl~erl-~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k-~v~D-sN~~vqe~~leal~~~l~~~~ 84 (2015)
..|+-.+|+...+ .+++-+.|..|...|.+.-.. .++......|...+.+ .+++ -|-.+|..||.+|..+--..
T Consensus 50 Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~- 126 (254)
T PF04826_consen 50 IRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN--DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN- 126 (254)
T ss_pred HHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-
Confidence 3455666665554 468889999998888765322 2333344556555544 3443 48899999999988773111
Q ss_pred hhhhhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh------hhHHHHHHHHhhcCCh-hhHHHHHHHHHHHH
Q 000156 85 ADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV------DVFLDVMEKAIKNKVA-KAVVPAIDVMFQAL 156 (2015)
Q Consensus 85 ~~~~~~~~~v~~~LieK~l~-~k~~~k~~a~~~ll~~~E~~~~------~~v~~~L~~~~~~Knp-Kv~~~~l~~L~~~l 156 (2015)
+.-......++.++. +|. +...+|..+..+++.+.+-... ..+...+..-|..+.+ .+...++.++..+-
T Consensus 127 -~~~~~l~~~i~~ll~-LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 127 -DYHHMLANYIPDLLS-LLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred -chhhhHHhhHHHHHH-HHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 111112334555553 343 6788999999999888865321 2344555555666544 45677777777777
Q ss_pred HHhCCCCc-----------------ChhHHHhhhhhhhcCCChhHHHHH
Q 000156 157 SEFGAKII-----------------PPKRILKMLPELFDHQDQNVRASS 188 (2015)
Q Consensus 157 ~~fG~~~i-----------------~~k~il~~l~~ll~~~d~~VR~~a 188 (2015)
+.+..... ..+.+-+.|..+..|+|+.||+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 205 ENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 77766421 124467788899999999999863
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=88.90 E-value=70 Score=40.64 Aligned_cols=169 Identities=19% Similarity=0.138 Sum_probs=103.9
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHH
Q 000156 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2015)
Q Consensus 865 ~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~ 944 (2015)
++--+|.+|+.-++.++.-. +....- -..++.++.....+.+-..+..++.++.+++-. .+++--++.. +..+++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~-~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P~lv~~~gG-~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIK-KGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALL-NPELVAECGG-IRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhc-CCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CHHHHHHcCC-HHHHHHH
Confidence 45678999999999999741 111111 156788888888888889999999999998843 2333223222 3666777
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC-----CCChh-HHHH-HHHHHHHHhccCCCC----
Q 000156 945 LGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA-----KLGAE-GRKD-LFDWLSKQLTGLSGF---- 1007 (2015)
Q Consensus 945 L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~-----k~~p~-~R~~-~l~~L~~~l~~~~~~---- 1007 (2015)
+.|....+.++...++-.++..-. .+.-++.+...+.+. +.+.+ .|.. ...-+...+..|+.-
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 777554577777777777765432 122233344333322 11121 2433 333455567777652
Q ss_pred CChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000156 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2015)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~ 1037 (2015)
.+-..-++.++.+|.-++.++|+..-..+-
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 121256777888898899999988765553
|
|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.56 E-value=5.2 Score=57.12 Aligned_cols=202 Identities=11% Similarity=0.065 Sum_probs=137.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
.+++.+.-++-..|..|++.+.+++...+.......++.....+.+...|-+..|+.++..++..+.+.+++.+.||++.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 56788888899999999999999997432222222245666777888899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--------chhhHHHHHHHHh--cCC------C---------ChhHHH
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--------LDKMVPYVTTALT--DAK------L---------GAEGRK 991 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--------l~~ll~~l~~~L~--~~k------~---------~p~~R~ 991 (2015)
++|.++-..-|....|..+|.+........-. -..+++.+.+.+. ++. + ..++-.
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ 204 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVIS 204 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHH
Confidence 99999999999999999999888876553211 0222333333321 110 0 023334
Q ss_pred HHHHHHHHHhccCCCCCC-------hhhhHHH--HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000156 992 DLFDWLSKQLTGLSGFPD-------AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (2015)
Q Consensus 992 ~~l~~L~~~l~~~~~~~~-------~~~ll~p--l~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~ 1058 (2015)
..+..+...+...+...+ .+.+... +.+.+.++++.||.+..+++-.+...+....|....+.++++
T Consensus 205 ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~ 280 (1312)
T KOG0803|consen 205 SSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPV 280 (1312)
T ss_pred HHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHH
Confidence 455555555543333211 2223322 666789999999999999998887776655444444444443
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.93 E-value=1.1e+02 Score=41.42 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhhcchh---hhHHHHHHHHHHHhhhChhHH---HHHHHHHhh-hCCChhHHHHHHHHHHHHHHHhCC--
Q 000156 681 CVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGV-- 751 (2015)
Q Consensus 681 ~~~~il~~LveKlgD~K---~r~~a~~~L~~l~e~~~~~~V---l~~L~~~l~-~~KnpKv~~~~l~~L~~li~~fG~-- 751 (2015)
.++..++.|+|++-... -|..|...|.+++..+..... +..++..+. +-.+|.....+|..+..++..=..
T Consensus 19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 45667888888877753 266777778877776543321 112222221 234566666666666555532100
Q ss_pred -----C-C-----------CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhh
Q 000156 752 -----S-H-----------LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2015)
Q Consensus 752 -----~-~-----------l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2015)
. . +.-+..|..+... ++.-|-.||..|++++..+-.+-|..++..+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~-~e~~DF~VR~~aIqLlsalls~r~~e~q~~l 161 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQS-LEEFDFHVRLYAIQLLSALLSCRPTELQDAL 161 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHH-HHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence 0 0 1113466666666 8888999999999999999998888776654
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=87.85 E-value=7.6 Score=42.28 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=67.8
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Q 000156 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 398 ~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~L~D-s~~~VR~aA~~al~~l~~~ 475 (2015)
..+..+.+..|..-++++||.+-..+|..|..|+.+|+...... .-+.++..+.+++.+ .+++||+...+.+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 35566777778888889999999999999999999998753221 247788889999988 8999999999999999888
Q ss_pred hCch
Q 000156 476 VGMR 479 (2015)
Q Consensus 476 ~Ge~ 479 (2015)
++..
T Consensus 112 f~~~ 115 (144)
T cd03568 112 FKND 115 (144)
T ss_pred hCCC
Confidence 8754
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=87.31 E-value=10 Score=48.62 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=105.9
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccc-hHHHHHHHH---HHHHHHHHHhCh----h
Q 000156 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATL---ITLGAVASAMGP----A 929 (2015)
Q Consensus 858 ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al---~~l~~La~alg~----~ 929 (2015)
+.+.+-+.+-..|.+||+.|+. ...++.|++.|...+.+. ..+|++.-+ ..+-.++.++=. .
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 3455666888999999888862 122578888888888654 333333222 233334444422 3
Q ss_pred hHHhhhHHHHHHHHHhCC----------CcHHHHHHHHHHHHHHHHhcC--c----hhhHHHHHHHHhcCCCChhHHHHH
Q 000156 930 VEKSSKGVLSDILKCLGD----------NKKHMRECTLTVLDAWLAAVH--L----DKMVPYVTTALTDAKLGAEGRKDL 993 (2015)
Q Consensus 930 f~~~~~~llp~ll~~L~D----------~k~~Vr~aa~~aL~~i~~~~g--l----~~ll~~l~~~L~~~k~~p~~R~~~ 993 (2015)
+++|+..++|.++.|+-. +.=.+|+-|...+..++...+ + .+++..+..++.+.+.......++
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGa 361 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGA 361 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhH
Confidence 789999999999998853 344599999999999998876 2 345556666666654345566777
Q ss_pred HHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChH---HHHHHHHHHHHHHHHcCh
Q 000156 994 FDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSD---VRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 994 l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~~---VR~aA~~~L~~l~~~~G~ 1045 (2015)
+..|.+.-...-. .+.+.....-+...+.+.+.. ....|..+...+..+.+.
T Consensus 362 i~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 362 IAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 7776643221111 122222222233334333332 255566666666655554
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.29 E-value=1e+02 Score=39.87 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHH
Q 000156 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 736 (2015)
Q Consensus 659 V~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~ 736 (2015)
..+.+|+.|+.+++.| .+..+.-.++.-||. ++. -.|..-+.+++..+ --.|.-||+
T Consensus 447 skEraLe~LC~fIEDc------ey~~I~vrIL~iLG~EgP~a--------------~~P~~yvrhIyNR~-iLEN~ivRs 505 (898)
T COG5240 447 SKERALEVLCTFIEDC------EYHQITVRILGILGREGPRA--------------KTPGKYVRHIYNRL-ILENNIVRS 505 (898)
T ss_pred HHHHHHHHHHHHHhhc------chhHHHHHHHHHhcccCCCC--------------CCcchHHHHHHHHH-HHhhhHHHH
Confidence 4466777777777764 122333334433443 111 12334445555543 246778999
Q ss_pred HHHHHHHHHHHHhCCCC---CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000156 737 EGILWMVSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2015)
Q Consensus 737 ~~l~~L~~li~~fG~~~---l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (2015)
+++.+|++ ||... +..+.+...++.+ +.|.+.+||+-|.-++..|-
T Consensus 506 aAv~aLsk----f~ln~~d~~~~~sv~~~lkRc-lnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 506 AAVQALSK----FALNISDVVSPQSVENALKRC-LNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHH----hccCccccccHHHHHHHHHHH-hhcccHHHHHHHHHHHHhhh
Confidence 99887755 55432 3356677778885 99999999999998887765
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=87.21 E-value=55 Score=41.53 Aligned_cols=93 Identities=6% Similarity=0.115 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHHHHHHHhccc---cCCC-CChhhHHHHHHhc----cc---cchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 865 PDWKVRLESIEAVNKILEEANK---RIQP-AGTGELFGGLRGR----LY---DSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 865 ~~Wk~R~eale~L~~ll~~a~~---~I~~-~~~~eL~~~L~~r----L~---DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
.+|+.+..|+..+..+...... .+.. +..-++...+..- |. +....++..||+.+..+...+.+ ..
T Consensus 267 ~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~---~~ 343 (370)
T PF08506_consen 267 NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK---EQ 343 (370)
T ss_dssp T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H---HH
T ss_pred ccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH---HH
Confidence 4799999999998888753211 1111 1122344444332 22 45667889999988887777654 46
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 000156 934 SKGVLSDILKCLGDNKKHMRECTLTVL 960 (2015)
Q Consensus 934 ~~~llp~ll~~L~D~k~~Vr~aa~~aL 960 (2015)
+..++|.++..|+++...|+..|..|+
T Consensus 344 l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 344 LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 778999999999999999999987765
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.98 E-value=3.1 Score=53.34 Aligned_cols=108 Identities=25% Similarity=0.397 Sum_probs=82.5
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHH
Q 000156 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (2015)
Q Consensus 861 ~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~ll 938 (2015)
.+.+.||-.=.+ |.++|+. ..-. -.+.+.+|++|++..|..|+..||.+|..+++.+|..|... -+.|+
T Consensus 13 ~l~~pDWa~Nle----IcD~IN~--~~~~---~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 13 SLAEPDWALNLE----ICDLINS--TEGG---PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred cccCccHHHHHH----HHHHHhc--CccC---cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 466779965433 5555542 1111 26899999999999999999999999999999999999843 35689
Q ss_pred HHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc-hhhHHHHH
Q 000156 939 SDILKCLGDN--KKHMRECTLTVLDAWLAAVHL-DKMVPYVT 977 (2015)
Q Consensus 939 p~ll~~L~D~--k~~Vr~aa~~aL~~i~~~~gl-~~ll~~l~ 977 (2015)
.-++...+.+ ...||+-+...|++|...++- +.-+|.+.
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~ 125 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYY 125 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHH
Confidence 9988888876 456999999999999988753 44444433
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.87 E-value=35 Score=42.11 Aligned_cols=180 Identities=12% Similarity=0.159 Sum_probs=112.6
Q ss_pred ccCChHHHHHHHHHHHHHhc----CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHH
Q 000156 295 KATKWSERKDAVAELTKLAS----TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLP 369 (2015)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~----~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp 369 (2015)
.+..-.+|.+|++.|..++. +..+.+ .+-+...+. .+++++..|+..|+.+|+..+..--+.=+.. =...++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 56778889999999988873 222222 233444444 8889999999999999999886432210100 012566
Q ss_pred HHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCChHhHH-----HHHHHHhhc--CChHHHHHHHHHHHHHHHhcChhH-HH
Q 000156 370 VLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVV-----EDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKAA-VL 440 (2015)
Q Consensus 370 ~LL~klk-dkk~~V~~aa~~aL~al~~~~~~~l~~il-----~~l~~~L~~--Knp~vR~~~l~~L~~~l~~~~~~~-l~ 440 (2015)
.|+..+. +....++..+--|+.+++.++......++ ..|..++++ .+.+.|.-++.++..++....... +.
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7777774 45556788999999999988322223332 456677886 668888889999998887653221 11
Q ss_pred HhhhhHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 441 KVHKDYVP-ICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 441 ~~l~~l~p-~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
. ....+ .+.....--+-++++++..++-.+......+
T Consensus 250 ~--~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 250 S--SLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTR 287 (342)
T ss_pred H--HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhc
Confidence 1 11112 2222333445577888887777776665443
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.72 E-value=1.4e+02 Score=40.56 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=56.2
Q ss_pred HHHHhhhcchhhhHHHHHHHHHHHhhh----ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHH
Q 000156 687 LGISERVADIKTRAHAMKCLTTFSEAV----GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLID 761 (2015)
Q Consensus 687 ~~LveKlgD~K~r~~a~~~L~~l~e~~----~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~ 761 (2015)
..|++-+-|--....+...|..+..-. .|..-+..++..+ --.|..||.++...|.++. .... ....+.-
T Consensus 432 ~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv-iLEn~ivRaaAv~alaKfg----~~~~~l~~sI~v 506 (865)
T KOG1078|consen 432 EHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV-ILENAIVRAAAVSALAKFG----AQDVVLLPSILV 506 (865)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh-hhhhhhhHHHHHHHHHHHh----cCCCCccccHHH
Confidence 333444444333444444444443321 2333333444332 2467889999998876654 3322 2345666
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHHH
Q 000156 762 FCKDTGLQSSAAATRNATIKLLGALH 787 (2015)
Q Consensus 762 ~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (2015)
.++.+ +.|++..||+.|.-.+..+-
T Consensus 507 llkRc-~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 507 LLKRC-LNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHH-hcCchHHHHHHHHHHHHHhh
Confidence 77775 99999999999998887775
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.09 E-value=2e+02 Score=41.95 Aligned_cols=268 Identities=15% Similarity=0.108 Sum_probs=149.6
Q ss_pred HHHhhhh--hhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHh----cCCCCCCCccchhhh
Q 000156 168 RILKMLP--ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVN----VSGTARPTRKIRAEQ 241 (2015)
Q Consensus 168 ~il~~l~--~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k----~~~~~~P~R~~rs~~ 241 (2015)
|+..+|. .+|.|+|+.||--..-++.+|.|-.-+++ ++ ...|++++-..|-+ +.....|. |.|-..
T Consensus 48 pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPea--Py-----~~~~lkdIf~~~~~q~~gL~d~~sp~-f~r~~~ 119 (1266)
T KOG1525|consen 48 PLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEA--PY-----TDEQLKDIFQLILSQFSGLGDVESPY-FKRYFY 119 (1266)
T ss_pred HHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCC--CC-----cHHHHHHHHHHHHHHHhhccCCCCcc-hhhHHH
Confidence 4444444 47999999999999999999999998753 32 12366666555433 32222221 222111
Q ss_pred hHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhh---ccCChHHHHHHHHHHHHHhcCCCC
Q 000156 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV---KATKWSERKDAVAELTKLASTKRI 318 (2015)
Q Consensus 242 ~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l---~s~kWkeR~eaL~~L~~l~~~~ki 318 (2015)
-.+.-...- -..-+++.+..+++..+= .-|++-+ ...+|-. .++-+..++....-
T Consensus 120 lletl~~~k------------------~~l~~~l~d~~e~~~~~f-~~f~d~~~~~~~~~v~~---~~~i~~~li~e~d~ 177 (1266)
T KOG1525|consen 120 LLETLAKVK------------------FCLLMLLEDCQELVHELF-RTFFDLARKGHPKKVFN---MLDIAIMLITEEDT 177 (1266)
T ss_pred HHHHHHHhH------------------HHheeeccchHHHHHHHH-HHHHHHHhccccHHHHH---HHHHHHHHHHhhcc
Confidence 111000000 001122223333332221 1233322 2255554 22223334432111
Q ss_pred CCCChHHHHHHHH-HHhc---ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 000156 319 APGDFTEVCRTLK-KLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMH 394 (2015)
Q Consensus 319 ~~~~y~~l~~~L~-k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~ 394 (2015)
. -.+++..|. +.+. |.+..-...|-.++..+|..+- ++...++...+-.-+.....++....+.+-.++
T Consensus 178 v---~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~----~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~ 250 (1266)
T KOG1525|consen 178 V---QSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLE----DTIANFLNSCLTEYKSRQSSLKIKYHELILELW 250 (1266)
T ss_pred c---hHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhc----hhHHHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 1 123444433 3333 5555555555555555555444 444444444443333355667777777777776
Q ss_pred HhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 395 ~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
.....-+-.++|.|..-|...+-.+|..+.+.++++|..-.. .+..-.+.+-.+...-+.|...+||-++.++.-.+.
T Consensus 251 ~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~-~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l 328 (1266)
T KOG1525|consen 251 RIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS-QLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCL 328 (1266)
T ss_pred HhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh-hhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHH
Confidence 642223567789999999999999999999999999875432 222334677778888899999999999988775544
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=85.51 E-value=2.6 Score=45.30 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=63.3
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHhhhhhhhcCCCh--hHHHHHHHHHHHHHHHh
Q 000156 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDHQDQ--NVRASSKGLTLELCRWI 199 (2015)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~~~d~--~VR~~a~~l~~ely~~l 199 (2015)
.+..++..|.+.+.++||.++.-+|..|-.++++=|... +.=+.|+..|.+++.++.. .||+....++.+-+..+
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999977632 3446788999998887643 39999999998888877
Q ss_pred C
Q 000156 200 G 200 (2015)
Q Consensus 200 G 200 (2015)
.
T Consensus 114 ~ 114 (133)
T smart00288 114 K 114 (133)
T ss_pred c
Confidence 5
|
Unpublished observations. Domain of unknown function. |
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=85.30 E-value=11 Score=40.80 Aligned_cols=96 Identities=26% Similarity=0.395 Sum_probs=70.7
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHHH
Q 000156 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 371 (2015)
+.+.+|.- +-.|..+++.. +..-.+.+++|+++|...|+++...|+.++..+.+..|..|... .+.++..|
T Consensus 18 ~~~~Dw~~----~l~icD~i~~~---~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l 90 (140)
T PF00790_consen 18 LPSPDWSL----ILEICDLINSS---PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDEL 90 (140)
T ss_dssp SSS--HHH----HHHHHHHHHTS---TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHH
Confidence 45678843 33455555322 23346899999999999999999999999999999999998755 35677777
Q ss_pred HHHhccCcHH----HHHHHHHHHHHHHHh
Q 000156 372 LEKLKEKKPT----VAESLTQTLQAMHKA 396 (2015)
Q Consensus 372 L~klkdkk~~----V~~aa~~aL~al~~~ 396 (2015)
.+.++.+... |++.+.+.+..|...
T Consensus 91 ~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 91 VKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 7767655442 888998888888865
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=85.20 E-value=5.7 Score=41.38 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHh--HHHHHHH----Hh--
Q 000156 304 DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF--LLPVLLE----KL-- 375 (2015)
Q Consensus 304 eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~--llp~LL~----kl-- 375 (2015)
..+.+|..+++.. +..+.++++.|.++|.+.|..++..|+.+|..+.+.-+..|..++.. ++-.++. ..
T Consensus 19 ~~i~~i~d~~~~~---~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~ 95 (115)
T cd00197 19 PLIMEICDLINET---NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLG 95 (115)
T ss_pred HHHHHHHHHHHCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccccc
Confidence 4556666655422 34578999999999999999999999999999999999988766432 2222321 11
Q ss_pred ccCcHHHHHHHHHHHHHHH
Q 000156 376 KEKKPTVAESLTQTLQAMH 394 (2015)
Q Consensus 376 kdkk~~V~~aa~~aL~al~ 394 (2015)
++....||+.+...+..|.
T Consensus 96 ~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 96 DDVSTNVREKAIELVQLWA 114 (115)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 2345677877777776653
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.81 E-value=22 Score=46.89 Aligned_cols=195 Identities=16% Similarity=0.152 Sum_probs=127.6
Q ss_pred hhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHH
Q 000156 292 EGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (2015)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (2015)
...++++-+.|.-.+.-|..+.. ...+..+-|..|...|..++.|--+.|+.+|..||..+-. ..++=+--+..++-.
T Consensus 92 Rg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~dee~~v~n~l~~ 170 (892)
T KOG2025|consen 92 RGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKDEECPVVNLLKD 170 (892)
T ss_pred hcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCCCcccHHHHHHH
Confidence 44588888999999998888885 3445556678888899999999999999999999887642 222211123333444
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000156 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (2015)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (2015)
+++ -|+.+.||.++..++. .. ..+ +|.|+.-..+-+...|.-+- .+|+++.....+ ..+.-+-.+
T Consensus 171 liq--nDpS~EVRRaaLsnI~---vd-nsT----lp~IveRarDV~~anRrlvY---~r~lpkid~r~l--si~krv~Ll 235 (892)
T KOG2025|consen 171 LIQ--NDPSDEVRRAALSNIS---VD-NST----LPCIVERARDVSGANRRLVY---ERCLPKIDLRSL--SIDKRVLLL 235 (892)
T ss_pred HHh--cCCcHHHHHHHHHhhc---cC-ccc----chhHHHHhhhhhHHHHHHHH---HHhhhhhhhhhh--hHHHHHHHH
Confidence 443 5889999987754432 11 122 45555555555556665543 344444422211 124556678
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhcc-----HHHHHHHHHHHhc
Q 000156 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD-----DVRRNKLSEMIAG 502 (2015)
Q Consensus 451 ~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld-----~~~~kkI~e~~~~ 502 (2015)
-.+|+|..-.||.|+.+++..=+-.+.+..+-.++..|| ....+.|+..+++
T Consensus 236 ewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 236 EWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 899999999999999999977554454445667888886 4455666666654
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=84.34 E-value=6.1 Score=43.97 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=68.5
Q ss_pred hhhHhHHHHHHHHhccCc------------------HHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHH
Q 000156 362 GSSRFLLPVLLEKLKEKK------------------PTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRS 421 (2015)
Q Consensus 362 ~~~~~llp~LL~klkdkk------------------~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~L~~Knp~vR~ 421 (2015)
++...++|.++..++-++ -.+|.+|.+|+.+++.. +...+..+++.+..|+.+ ...+|.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 456677777777665554 35899999999999987 224567889999999999 999999
Q ss_pred HHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh
Q 000156 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (2015)
Q Consensus 422 ~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L 454 (2015)
-|...|.++....+. .+...++.+++.+.+.|
T Consensus 84 L~~~~l~kl~~~~p~-~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 84 LCHLMLSKLAQLAPE-EVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHS-HH-HHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHh
Confidence 999999998766544 45555788888888777
|
; PDB: 4A0C_A 1U6G_C. |
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=83.91 E-value=13 Score=42.39 Aligned_cols=115 Identities=14% Similarity=0.052 Sum_probs=83.6
Q ss_pred hhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH---
Q 000156 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV--- 439 (2015)
Q Consensus 363 ~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l--- 439 (2015)
-+..+++.+++.+-.++..||..+...+..+...|-+++..++|.+++-..+.++.+|..+...+....++++.-..
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35678889999999999999999999999999887788999999999888899999999999999998888753221
Q ss_pred HHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000156 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 440 ~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G 477 (2015)
.+.++.....-..+-.|.....+......++.++..++
T Consensus 85 ~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 85 SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 12222222222333445444333335556666666665
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=83.66 E-value=36 Score=50.99 Aligned_cols=182 Identities=13% Similarity=0.166 Sum_probs=121.2
Q ss_pred CChHHHHHHHHHHHHHhc----CCCCCCCCh-HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHH
Q 000156 297 TKWSERKDAVAELTKLAS----TKRIAPGDF-TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (2015)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~----~~ki~~~~y-~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (2015)
.+=..+.-|++.|++++. ...+..-.+ .++++-|..++. ..+..|....++|+..|...-...+..-++.++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 355577888888888762 222222223 378888888777 66778999999999999988888888888999988
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHh--cCCCh--HhHHHHHHHHh----hcC-ChHHHHHHHHHHHHHHHhc---C---
Q 000156 371 LLEKLKEKKPTVAESLTQTLQAMHKA--GCLNL--VDVVEDVKTSV----KNK-VPLVRSLTLNWVTFCIETS---S--- 435 (2015)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~--~~~~l--~~il~~l~~~L----~~K-np~vR~~~l~~L~~~l~~~---~--- 435 (2015)
+--.++++.+.+++.+.+++..++.. +..+. .+.+.+++.++ +.+ +..+-..++.+|..|.... +
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~ 1308 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGS 1308 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccc
Confidence 88888999999999999999988765 11111 23444444333 333 3555556666666542111 0
Q ss_pred -----------------------------hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 436 -----------------------------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 436 -----------------------------~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
......+.=.++-.+.++..|..++||..|.+.|-.+....|.
T Consensus 1309 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1309 SSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred cccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 0000011222333445567899999999999999888888885
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=83.43 E-value=18 Score=38.79 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=64.8
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Q 000156 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLND---GTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 398 ~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~L~D---s~~~VR~aA~~al~~l~ 473 (2015)
..+..+.+..|..-++++||.+...++..|..|+.+++......+. +.++..+.+.+.. .++.||..+.+.+....
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 3566777888888899999999999999999999999874322222 3556667777765 58899999999999999
Q ss_pred HHhCch
Q 000156 474 KSVGMR 479 (2015)
Q Consensus 474 ~~~Ge~ 479 (2015)
..++..
T Consensus 112 ~~f~~~ 117 (133)
T cd03561 112 ESFGGH 117 (133)
T ss_pred HHhcCC
Confidence 998863
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=83.42 E-value=1.4e+02 Score=39.79 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=82.1
Q ss_pred ChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHH--HHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 000156 927 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (2015)
Q Consensus 927 g~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl--~~ll~--~l~~~L~~~k~~p~~R~~~l~~L~~~l~ 1002 (2015)
...|++.+..++|+++.+|+.....||..+++.+..+-..+.- .--+| .+....++++.++.+|...+-|+..-++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 4568899999999999999999999999999999999888752 22344 5677777664457899999999987776
Q ss_pred cCCCCCChhhhHHHHHhhcCCCC---hHHHHHHHHHHHHHHHHc
Q 000156 1003 GLSGFPDAAHLLKPASIAMTDKS---SDVRKAAEACIVEILRAG 1043 (2015)
Q Consensus 1003 ~~~~~~~~~~ll~pl~~~L~D~~---~~VR~aA~~~L~~l~~~~ 1043 (2015)
..+. .+-..+++.++.++.... .++.......+..+++..
T Consensus 94 Rl~~-~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~ 136 (501)
T PF13001_consen 94 RLDD-EERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLL 136 (501)
T ss_pred cCCH-HHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcC
Confidence 6643 234566677888886433 233333333444444443
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=83.42 E-value=19 Score=39.06 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=73.3
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHHH
Q 000156 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 371 (2015)
+.+.+|.- +.++..+++.. +..-.+.+++|+++|...|++|...|+.++..+.+..|..|... .+.++..|
T Consensus 14 l~~~dw~~----ileicD~In~~---~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 14 NREEDWEA----IQAFCEQINKE---PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCCCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 46788854 44444444321 22345789999999999999999999999999999999999755 35788888
Q ss_pred HHHhcc------CcHHHHHHHHHHHHHHHHh
Q 000156 372 LEKLKE------KKPTVAESLTQTLQAMHKA 396 (2015)
Q Consensus 372 L~klkd------kk~~V~~aa~~aL~al~~~ 396 (2015)
++.+.. ....|++-+...+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 887753 4578999999999888764
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.39 E-value=19 Score=44.96 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=83.6
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHh
Q 000156 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVD 403 (2015)
Q Consensus 329 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~-----~~l~~ 403 (2015)
.|...++.-|.+|+..|+.-|..+-..--.....+...+++.+.+.+-|....||++...+++.++-..| ....-
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 3444556777778888877777766652222334666788888888999999999999999998765422 12345
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000156 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (2015)
Q Consensus 404 il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (2015)
+++.+..+|.|-.|.+|..++.||..++..+++..
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 67888899999999999999999999999987653
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.09 E-value=11 Score=49.51 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=113.8
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhc-cccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHH
Q 000156 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2015)
Q Consensus 860 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~r-L~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ll 938 (2015)
+.+.|++--.|..++-.+.---.+ +.+ ...+..|... ++|.|-.|+..|...||.++-. -...+
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~G-----Tgn--nkair~lLh~aVsD~nDDVrRaAVialGFVl~~--------dp~~~ 590 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVG-----TGN--NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR--------DPEQL 590 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhc-----cCc--hhhHHHhhcccccccchHHHHHHHHHheeeEec--------Chhhc
Confidence 346788888899987766522211 112 2344444444 7999999999999888866521 13567
Q ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC--CCChhhhHH
Q 000156 939 SDILKCLGDN-KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLK 1015 (2015)
Q Consensus 939 p~ll~~L~D~-k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--~~~~~~ll~ 1015 (2015)
|.++..|.++ +++||-.+.-+|+-.+.-+|...-+..+-+...++ +..+|+.++--++-.+-.... .+.+..+.+
T Consensus 591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~--~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk 668 (929)
T KOG2062|consen 591 PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDP--VDFVRQGALIALAMIMIQQTEQLCPKVNGFRK 668 (929)
T ss_pred hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcCh--HHHHHHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 8888888876 78999999999999999999888777766666665 468999988877765544433 355666777
Q ss_pred HHHhhcCCCChHHHHHHHHHHH
Q 000156 1016 PASIAMTDKSSDVRKAAEACIV 1037 (2015)
Q Consensus 1016 pl~~~L~D~~~~VR~aA~~~L~ 1037 (2015)
-+.+.+.|++.++-..--.+|.
T Consensus 669 ~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 669 QLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred HHHHHhhhhhhHHHHHHHHHHH
Confidence 7888888988886555444444
|
|
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=83.05 E-value=6.5 Score=41.37 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh---C---
Q 000156 873 SIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---G--- 946 (2015)
Q Consensus 873 ale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L---~--- 946 (2015)
.+++|.++..+ .+..+.+++..|.+||+|.+..|...+|++|..++..-.+.|...++.-...|-.+. +
T Consensus 21 ~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~D 95 (122)
T cd03572 21 LYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPD 95 (122)
T ss_pred HHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 34455555542 233468999999999999999999999999999999888888877666554443322 2
Q ss_pred -----CCcHHHHHHHHHHHHHHHH
Q 000156 947 -----DNKKHMRECTLTVLDAWLA 965 (2015)
Q Consensus 947 -----D~k~~Vr~aa~~aL~~i~~ 965 (2015)
+..+.||.+|.+++..+..
T Consensus 96 p~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 96 PLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cccCcchhHHHHHHHHHHHHHHhc
Confidence 2345799999999988764
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.93 E-value=16 Score=46.78 Aligned_cols=197 Identities=17% Similarity=0.134 Sum_probs=125.1
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHH
Q 000156 290 FWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (2015)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (2015)
.....++++-+.|+-.++-|.-+.+. ..|...-|..|...|.+++-|-.+.|+.+|..|+..+-. +..+=+.....++
T Consensus 96 ~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe-~~~neen~~~n~l 174 (885)
T COG5218 96 LLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE-MELNEENRIVNLL 174 (885)
T ss_pred HHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-ccCChHHHHHHHH
Confidence 34456889999999999988887753 345555677888888888889999999999999988763 3322233344444
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHH
Q 000156 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (2015)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p 448 (2015)
-.++. -|+...||.++ |-.+... ..+. |.|+.-..+-+...|.. +-.+|+.+.+.......-|.+.
T Consensus 175 ~~~vq--nDPS~EVRr~a---llni~vd-nsT~----p~IlERarDv~~anRr~---vY~r~Lp~iGd~~~lsi~kri~- 240 (885)
T COG5218 175 KDIVQ--NDPSDEVRRLA---LLNISVD-NSTY----PCILERARDVSGANRRM---VYERCLPRIGDLKSLSIDKRIL- 240 (885)
T ss_pred HHHHh--cCcHHHHHHHH---HHHeeeC-CCcc----hhHHHHhhhhhHHHHHH---HHHHHhhhhcchhhccccceeh-
Confidence 44443 46777788755 2222211 1222 34444344444444443 2356666554322221123333
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHh
Q 000156 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (2015)
Q Consensus 449 ~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~ 501 (2015)
.+..+++|..-.||.|+..++..-+..--+-.+-.+++.||-.+++-....++
T Consensus 241 l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik 293 (885)
T COG5218 241 LMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIK 293 (885)
T ss_pred hhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHH
Confidence 67789999999999999999987776655545667888898777664444443
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.81 E-value=10 Score=50.83 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=122.3
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHh--ccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEE--ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~--a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
.+.+..+.|+.--+|-.|+..+..+++. ....+. ...++.++...|.|-+..|...|++.+..|+.. |
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~---~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQ---GEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhh---HHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------c
Confidence 4667778888888999999999999982 111222 245788889999999999999999988777755 5
Q ss_pred hhHHHHHHHHHhCCCc-H---HHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc
Q 000156 934 SKGVLSDILKCLGDNK-K---HMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (2015)
Q Consensus 934 ~~~llp~ll~~L~D~k-~---~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~ 1003 (2015)
-+.++|.+..-+.+.+ + ..|--+-+++..+++..| .+.++..+...+.++ .-.-|...+..+..+...
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP--DHEFRASSLANLGQLCQL 877 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHH
Confidence 5678888888554433 2 234444467777777776 233444444444433 123477777766655443
Q ss_pred CCC--CCChhhhHHHHHhhc-CCCChHHHHHHHHHHHHHHHHcChhH
Q 000156 1004 LSG--FPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQET 1047 (2015)
Q Consensus 1004 ~~~--~~~~~~ll~pl~~~L-~D~~~~VR~aA~~~L~~l~~~~G~~~ 1047 (2015)
... +..+.+.+..|+... .|...-||.+|...+..+....|++.
T Consensus 878 ~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 878 LAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 321 223344455555543 79999999999999999999999764
|
|
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=82.14 E-value=7.1 Score=41.09 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=50.4
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh-----------cCCCHHHHHHHHH
Q 000156 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-----------NDGTPEVRDAAFS 467 (2015)
Q Consensus 399 ~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L-----------~Ds~~~VR~aA~~ 467 (2015)
..+.++++.|..-|++++|.||.-+|..|..++..-+.. |...+..-...+..|. +|....||++|.+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 345677888888888888999888998888877765433 3322222223333332 4556789999999
Q ss_pred HHHHHH
Q 000156 468 VLAAIA 473 (2015)
Q Consensus 468 al~~l~ 473 (2015)
++..+.
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 998775
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.96 E-value=7.6 Score=50.61 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=99.1
Q ss_pred hccccchHHHHHHHHHHHHHHHHHhChhh-----HHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh----cC---c
Q 000156 902 GRLYDSNKNLVMATLITLGAVASAMGPAV-----EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA----VH---L 969 (2015)
Q Consensus 902 ~rL~DsN~~V~~~Al~~l~~La~alg~~f-----~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~----~g---l 969 (2015)
.-|+-.|.+|+..|+.++=.+..--|++. +..+..=+--+...|.|.-+.||..|+..+..+... .+ +
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~ 260 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTIL 260 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 44567899999999999888887777765 333444445677889999999999998877765543 23 3
Q ss_pred hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000156 970 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 970 ~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~ 1041 (2015)
..++..|.+.+..+. ..++|..+.+-|...+..-...+-+..+++.+--.|.|.+..||-|+...+..+-.
T Consensus 261 ~~ll~kI~d~~a~dt-~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 261 IDLLKKITDELAFDT-SSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHhhhcc-chheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 445555666665443 36899999988887665322233445555657778999999999999998876643
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=81.86 E-value=14 Score=46.68 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=40.8
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000156 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (2015)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al 469 (2015)
++.|-+|..++.++..+-...++.. +..++|.+..+|.+++.-|+..|+-|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~----l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQ----LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHH----HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 7889999999999988665555543 478999999999999999999998774
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=81.73 E-value=16 Score=45.82 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=76.4
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccc-------hHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-------NKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 861 ~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds-------N~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
.+-+.+-..|.+|++.|+. ... +..|++.|...+.+. |..+....++.+..|...-.-.+++|
T Consensus 186 a~~~~~~~~r~~aL~sL~t-----D~g-----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Y 255 (343)
T cd08050 186 ALVGSNEEKRREALQSLRT-----DPG-----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPY 255 (343)
T ss_pred HHhCCCHHHHHHHHHHhcc-----CCC-----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHh
Confidence 3455677778888777652 122 356666666655433 33333333444444433333457899
Q ss_pred hhHHHHHHHHHhC----------CCcHHHHHHHHHHHHHHHHhcC--chhhHH----HHHHHHhcCCCChhHHHHHHHHH
Q 000156 934 SKGVLSDILKCLG----------DNKKHMRECTLTVLDAWLAAVH--LDKMVP----YVTTALTDAKLGAEGRKDLFDWL 997 (2015)
Q Consensus 934 ~~~llp~ll~~L~----------D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~----~l~~~L~~~k~~p~~R~~~l~~L 997 (2015)
+..|+|.++.|+- +..-.+|+.|...|..+++.++ ...+.+ .+..+|.+++.+.....+++..|
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL 335 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGL 335 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHH
Confidence 9999999999883 2334699999999999999876 223334 44444444432223355555444
Q ss_pred H
Q 000156 998 S 998 (2015)
Q Consensus 998 ~ 998 (2015)
.
T Consensus 336 ~ 336 (343)
T cd08050 336 S 336 (343)
T ss_pred H
Confidence 4
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.51 E-value=23 Score=50.91 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=135.3
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000156 290 FWEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2015)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~--~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2015)
..+++.-++=..|..|+.+|..+++..... .+-++.....+.+.+.|-+..|+....+++..+..++++...||.+.+
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l 125 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL 125 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 344555566678889999999988533222 123667778888888999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------C-CChHhHHHHH----------------HHHhhcCChHHHHH
Q 000156 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------C-LNLVDVVEDV----------------KTSVKNKVPLVRSL 422 (2015)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~--------~-~~l~~il~~l----------------~~~L~~Knp~vR~~ 422 (2015)
+|..+-..-|.-..|..+|.+.+...+... | ..+-.++.++ ...++.|-+++...
T Consensus 126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~s 205 (1312)
T KOG0803|consen 126 IPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISS 205 (1312)
T ss_pred hhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHH
Confidence 999999888888889988888877665320 1 0011112221 12234677888888
Q ss_pred HHHHHHHHHHhcChh-HHH---Hhhhh--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 423 TLNWVTFCIETSSKA-AVL---KVHKD--YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 423 ~l~~L~~~l~~~~~~-~l~---~~l~~--l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
++..+...+...... .+. ...+. -...+-+.+.+..+.+|.+..+++-.+.+.+...
T Consensus 206 sLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 206 SLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred HHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 888888887544321 111 11122 2345678889999999999999998887666544
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.27 E-value=3.1e+02 Score=43.58 Aligned_cols=168 Identities=13% Similarity=0.093 Sum_probs=95.7
Q ss_pred CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccc
Q 000156 754 LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES 833 (2015)
Q Consensus 754 l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~ 833 (2015)
++..-+++.+... +.+.|..++.++..++..++...-.. |++- .+
T Consensus 980 lD~~i~ldal~~~-l~~~~~~~~~~g~~~l~~i~~~~~~~----l~~~-----------------------~~------- 1024 (3550)
T KOG0889|consen 980 LDPSTFLDALVES-LSHENSEMRPAGVRALKVIFSTSTLI----LGSP-----------------------ER------- 1024 (3550)
T ss_pred cCHHHHHHHHHHH-HhccchhhhhhHHHHHHHHHHHHHHh----hcCc-----------------------ch-------
Confidence 5666788888886 99999999999999988776432211 1100 00
Q ss_pred cCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhccccchHHHH
Q 000156 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLV 912 (2015)
Q Consensus 834 ~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~-~~~~eL~~~L~~rL~DsN~~V~ 912 (2015)
.-...+...|-+.++..+-++.|..|..|...|.-++..-+ ..+- ..+.+++.+|.-++.|.-..+-
T Consensus 1025 -----------~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~-~~~l~d~~~d~~~~l~fvl~d~~~e~~ 1092 (3550)
T KOG0889|consen 1025 -----------AFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMP-SLWLLDFQVDILKALFFVLKDTESEVS 1092 (3550)
T ss_pred -----------hhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhch-HHHHHHHHHHHhhhHHHhhcCCccccc
Confidence 00112333445566666777777777777666666665321 1100 1123445555444443222111
Q ss_pred H----HHHHHHHHHH----HHhCh-hh-HHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000156 913 M----ATLITLGAVA----SAMGP-AV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 913 ~----~Al~~l~~La----~alg~-~f-~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2015)
. .+-.++-.+- ...+. +- ......++..+..-|.+++..||+.+..+|..+.+..|
T Consensus 1093 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~ 1158 (3550)
T KOG0889|consen 1093 SLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSG 1158 (3550)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcC
Confidence 1 1111111111 11111 11 13455677788888889999999999999999999886
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.23 E-value=70 Score=43.36 Aligned_cols=179 Identities=13% Similarity=0.148 Sum_probs=105.8
Q ss_pred HHHHhhhccC-CHHHHHHHHHHHHHHHHhccc--c-chHHH----HHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC
Q 000156 604 ADTVGQLKSA-VWKERLEAISSLRQQVEAVQN--L-DQSVE----ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 675 (2015)
Q Consensus 604 ~~l~~~L~s~-~Wk~Rl~a~e~L~~~v~~~~~--~-~~~~~----~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~ 675 (2015)
..++.+|... +--..++++.+|.+++.-+.+ + .-..+ +|+.+|. -+.||-++..++.+|.++.+.+|
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~-----~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLS-----HEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHhhcc
Confidence 4667777766 777788888888877643222 1 11223 4444443 47899999999999999999987
Q ss_pred CCchhHH-HHHHHHHHhhhcchhhhHHHHHHH---HHHHhhhChhHH----HHHHHHHhhhCCChhHHHHHHHHHHHHHH
Q 000156 676 KFPKKCV-VLCLLGISERVADIKTRAHAMKCL---TTFSEAVGPGFI----FERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (2015)
Q Consensus 676 ~~~~~~~-~~il~~LveKlgD~K~r~~a~~~L---~~l~e~~~~~~V----l~~L~~~l~~~KnpKv~~~~l~~L~~li~ 747 (2015)
.-..-.+ +..||.+++||-..-.-+.|.++| ..|....+-..+ +..++.++ +==+--++..+|...+++..
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 5332222 247899999998865444444444 444444332211 11111111 10112344555666666666
Q ss_pred HhCCCCCC-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 000156 748 DFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789 (2015)
Q Consensus 748 ~fG~~~l~-~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~ 789 (2015)
....+.+. +-+.++.+..+ |++.+..+-+.+.-|+..+...
T Consensus 324 si~sd~f~~v~ealPlL~~l-Ls~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPL-LSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred cCCCccchHHHHHHHHHHHH-HhhccchhHHHHHHHHHHHHHh
Confidence 55544332 34567777788 8888877666666666655443
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=81.03 E-value=8.3 Score=38.61 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=66.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
..+..+.|..-=+|-.|+..|.+++.... ........++..+...|+|....|...|++.+..|+...+ ..
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-------~~ 77 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-------DE 77 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-------HH
Confidence 45666788877799999999999998532 2223346788889999999999999999999999996653 45
Q ss_pred HHHHHHHHhCCCc
Q 000156 937 VLSDILKCLGDNK 949 (2015)
Q Consensus 937 llp~ll~~L~D~k 949 (2015)
+++.+++.+.|.+
T Consensus 78 vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 78 VLPILLDEYADPS 90 (92)
T ss_pred HHHHHHHHHhCcc
Confidence 7788888777654
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.02 E-value=5.9 Score=50.21 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=58.2
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh
Q 000156 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (2015)
Q Consensus 334 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdk-k~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L 412 (2015)
++|.|--|++.|..+||.++-.= +.+++..++.+.++ +..||-...-+|.-.+.. ++....++.+-.-+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~ 630 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAG--TGDKVATDILEALM 630 (926)
T ss_pred cccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHh
Confidence 34555555555555554443110 23455555555443 555665555555544443 33333333333344
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHH
Q 000156 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (2015)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~ 460 (2015)
.+-|--||+.++..+..++-.+.+. +.+..+.|...+-..+.|.+.+
T Consensus 631 ~D~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 631 YDTNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hCcHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhhHh
Confidence 5666666666666666555555432 3344455555566666655544
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=80.97 E-value=26 Score=46.14 Aligned_cols=126 Identities=14% Similarity=0.199 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh
Q 000156 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403 (2015)
Q Consensus 324 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~ 403 (2015)
.+.+.++..++.|..+.|+..|++.|-.+|+.-. .++..+.-.|...|....+..++++..+|..++.. ....
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~---d~k~ 130 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ---DPKG 130 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc---CcHH
Confidence 4678889999999999999999999999887633 35666677777777788888899999999999986 2333
Q ss_pred HHHHHHHHhh---cCChHHHHHHHHHHHHHHHhcChhHHH---HhhhhHHHHHHHHhcC
Q 000156 404 VVEDVKTSVK---NKVPLVRSLTLNWVTFCIETSSKAAVL---KVHKDYVPICMECLND 456 (2015)
Q Consensus 404 il~~l~~~L~---~Knp~vR~~~l~~L~~~l~~~~~~~l~---~~l~~l~p~l~k~L~D 456 (2015)
.+..|+..+. +....+|+.++.||..-+.......+. ..-.-++..+.+.|.|
T Consensus 131 tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 131 TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 3444443332 556789999999998776655443322 1224566778888888
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=80.87 E-value=21 Score=43.59 Aligned_cols=138 Identities=14% Similarity=0.211 Sum_probs=105.8
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc----ch--hhhHhHHHHHHHHhc--------cCcHHHHHHH
Q 000156 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FS--GSSRFLLPVLLEKLK--------EKKPTVAESL 386 (2015)
Q Consensus 321 ~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~----f~--~~~~~llp~LL~klk--------dkk~~V~~aa 386 (2015)
..+.-+++.+...+.|....+...+|+|+..|...+... |. .+...+-.++...+- +....+...+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 346678889999999999999999999999999866533 23 347777777887777 7778899999
Q ss_pred HHHHHHHHHh----c----CCChHhHH-HHHHHHhhc--C--ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHH
Q 000156 387 TQTLQAMHKA----G----CLNLVDVV-EDVKTSVKN--K--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (2015)
Q Consensus 387 ~~aL~al~~~----~----~~~l~~il-~~l~~~L~~--K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 453 (2015)
..|+..++.. + ...+.+++ +.|+..+.+ + .+.++...++.+..++...+.. ..++++.++|.+...
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 9999998663 0 12244554 446666653 3 5899999999999998876654 457899999999999
Q ss_pred hcCCCH
Q 000156 454 LNDGTP 459 (2015)
Q Consensus 454 L~Ds~~ 459 (2015)
+.+++.
T Consensus 274 l~npf~ 279 (282)
T PF10521_consen 274 LENPFG 279 (282)
T ss_pred hcCCCc
Confidence 988753
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.83 E-value=21 Score=49.59 Aligned_cols=131 Identities=20% Similarity=0.220 Sum_probs=92.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhc
Q 000156 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN 414 (2015)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~ 414 (2015)
-+++.+...|--+++.+.-. .. .|...-+|.++.-+ |.+.+.||..+..++.-+.-....-++..-+.+..-|.+
T Consensus 934 ~sdp~Lq~AAtLaL~klM~i-Sa---~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D 1009 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCI-SA---EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRD 1009 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhh-hH---HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcC
Confidence 44566666666666555421 22 34445555555555 467888998888888765532134456778889999999
Q ss_pred CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
-++.||..|+..|..++-+- ..+ +|=.++.+..|+.|+++++|+-|..-|-.+.+.
T Consensus 1010 ~~~~vRkta~lvlshLILnd----miK-VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1010 ESPSVRKTALLVLSHLILND----MIK-VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHhh----hhH-hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 99999999999998876531 222 356678899999999999999999777666544
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.83 E-value=22 Score=42.55 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=110.8
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHH
Q 000156 297 TKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (2015)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~~ki~~--~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 374 (2015)
.+--.+..++-.+...+..+.-.. .++ ..+..+...+.+.+..|...|+.++..++..- +.....+.+++.+++.
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~--en~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVND--ENQEQIKMYIPQVCEE 101 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHHHHH
Confidence 455566666666655443221000 011 23456777888999999999999999887543 2334556667777776
Q ss_pred hccC--cHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHH
Q 000156 375 LKEK--KPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPI 449 (2015)
Q Consensus 375 lkdk--k~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~ 449 (2015)
.... +..++.++..+|..+... ...-+...+++++.-+...+..+|..++..|..+-+. + ......+ ......
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p-~~~~~Ll~~q~~~~ 179 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-P-DMTRELLSAQVLSS 179 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-H-HHHHHHHhccchhH
Confidence 5443 667888888888777432 1122456788888888999999999999988775432 1 1111111 234556
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHHhCch
Q 000156 450 CMECLNDG-TPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 450 l~k~L~Ds-~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
++.+++.. +.++--.+...+..+...++.+
T Consensus 180 ~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 180 FLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 66666654 5677666666666666666543
|
|
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.72 E-value=9.3 Score=47.50 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=94.9
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhh-HHhh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV-EKSS 934 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f-~~~~ 934 (2015)
.+++.++.-.|-++|++|+..|.+++.. +..+.-..+.+++.-+..++.|-...|+....+++..+...+++.- .+++
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 5788889999999999999999999974 3433333457888888999999999999999999999888777664 7888
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000156 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2015)
..+++.+...+...-+.||.-+...+.-++..++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 8899999999999999999999888888888876
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=80.49 E-value=25 Score=45.28 Aligned_cols=176 Identities=14% Similarity=0.105 Sum_probs=105.6
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHH---Hhhhc----chhhhH
Q 000156 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLAR---GLRTH----FSGSSR 365 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~---~L~~~----f~~~~~ 365 (2015)
+.+.+=..|.+||+.|+. ...++.+++-+...|. ....+|+..-+..|-.|-+ .|-++ .++|+.
T Consensus 216 ~~g~~~~~r~eAL~sL~T--------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh 287 (576)
T KOG2549|consen 216 CTGSDEPLRQEALQSLET--------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLH 287 (576)
T ss_pred HhcCCHHHHHHHHHhhcc--------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHH
Confidence 456888899999998743 2346778888887777 3344444444444433333 33222 579999
Q ss_pred hHHHHHHHHhccCcHH----------HHHHHHHHHHHHHHhcCCChH----hHHHHHHHHhh-c-CChHHHHHHHHHHHH
Q 000156 366 FLLPVLLEKLKEKKPT----------VAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVK-N-KVPLVRSLTLNWVTF 429 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~----------V~~aa~~aL~al~~~~~~~l~----~il~~l~~~L~-~-Knp~vR~~~l~~L~~ 429 (2015)
.++|.++.++-.++-- +|+-+...+..++.+...... .|+..+..++. + +.+...-+++.-|..
T Consensus 288 ~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 288 QLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred HHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 9999999998777542 788888888888876222222 34444444443 3 557888888877766
Q ss_pred HHHhcChhHHHHhhhhHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHhC
Q 000156 430 CIETSSKAAVLKVHKDYVPICMECLNDGTP---EVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 430 ~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~---~VR~aA~~al~~l~~~~G 477 (2015)
+-...-...+.+.++.+.--+...+++... -.+..|..+.+.|.++..
T Consensus 368 lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~ 418 (576)
T KOG2549|consen 368 LGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAEN 418 (576)
T ss_pred hhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhh
Confidence 433221222223445555555544543333 236666667766666554
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=80.38 E-value=7.1 Score=39.11 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=64.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHH
Q 000156 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (2015)
Q Consensus 405 l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~ 484 (2015)
+..++..+.+..+.+|...+..|..++.... ......+.++..+...|.|.++=|=-.|.++|..+....+++.+..+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 4455566678889999999999999998766 11123578889999999999999999999999999999998766555
Q ss_pred HH
Q 000156 485 IE 486 (2015)
Q Consensus 485 l~ 486 (2015)
++
T Consensus 83 ~~ 84 (92)
T PF10363_consen 83 LD 84 (92)
T ss_pred HH
Confidence 44
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=80.32 E-value=5.9 Score=45.18 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=60.5
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhC
Q 000156 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (2015)
Q Consensus 128 ~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (2015)
.-++.+++.+.+.+++++..++..+..+++ +|. ++|+..+|.+..|..++|+.||+.|..++.+++.--+
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~-qGL--vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILR-QGL--VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cCC--CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 345667778889999999999999988877 687 6799999999999999999999999999998875543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2015 | ||||
| 2of3_A | 266 | Tog Domain Structure From C.Elegans Zyg9 Length = 2 | 8e-26 | ||
| 2qk2_A | 242 | Structural Basis Of Microtubule Plus End Tracking B | 2e-09 | ||
| 4ffb_C | 278 | A Tog:alphaBETA-Tubulin Complex Structure Reveals C | 7e-06 | ||
| 2qk1_A | 249 | Structural Basis Of Microtubule Plus End Tracking B | 5e-05 |
| >pdb|2OF3|A Chain A, Tog Domain Structure From C.Elegans Zyg9 Length = 266 | Back alignment and structure |
|
| >pdb|2QK2|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215 And Eb1 Length = 242 | Back alignment and structure |
|
| >pdb|4FFB|C Chain C, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 278 | Back alignment and structure |
|
| >pdb|2QK1|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 244 bits (624), Expect = 3e-73
Identities = 66/255 (25%), Positives = 134/255 (52%)
Query: 1133 NVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLE 1192
K ++ +++ + ++ F+ P E I +L+ + + L +L DFK+ + L+
Sbjct: 9 EDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALD 68
Query: 1193 MLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252
L + + + ++ D+LL+W L+F ++N L+KVLE + + +RD +++
Sbjct: 69 SLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128
Query: 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECV 1312
E + F+P L+ K+G + +R +R++ + + K P +L+ L+SKN R R EC+
Sbjct: 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECL 188
Query: 1313 DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372
++ + I + G L + VA ++D +R AA+N L +K G+ +W+ G+
Sbjct: 189 LVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248
Query: 1373 LTDAQKSMLDDRFKW 1387
+ D KS++++R K
Sbjct: 249 MADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 93.3 bits (231), Expect = 8e-21
Identities = 50/261 (19%), Positives = 104/261 (39%), Gaps = 12/261 (4%)
Query: 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621
KK +++ KL + P++ + ++++ LG+ + QL +K+ L A
Sbjct: 8 NEDKKQRIKEEKQLKLVKWNFQ-APTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAA 66
Query: 622 ISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN----YLAATATK 676
+ SL + + L + ++L++ + + E N +V+E+ + T T
Sbjct: 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLR--FFETNPAALIKVLELCKVIVELIRDTETP 124
Query: 677 FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKV 734
++ V + + + + K R + S+ VGP + L +K KN +
Sbjct: 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK-SKNARQ 183
Query: 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
SE +L + + + G+S LK + + RNA I +L A KF G +
Sbjct: 184 RSECLLVIEYYITNAGISPLKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQM 242
Query: 795 KGFLADVKPALLSALDAEYEK 815
+ S ++ ++
Sbjct: 243 WKAAGRMADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 92.5 bits (229), Expect = 2e-20
Identities = 34/225 (15%), Positives = 76/225 (33%), Gaps = 6/225 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
+S+ + LL K+ +L HK++K A L L D+ + L
Sbjct: 36 ISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLR 95
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGR----YAKEVCDAIAAKCLTGRPKTVEKAQAV 116
++N K L+ ++ + K + + +
Sbjct: 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDI 155
Query: 117 FMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPEL 176
+ ++ ++ A+K+K A+ + V+ ++ G + + K +
Sbjct: 156 VNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPF 215
Query: 177 FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
+D NVR ++ + + ++ G K +M D K +E
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEGDQMWK--AAGRMADKDKSLVE 258
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 1e-16
Identities = 40/228 (17%), Positives = 89/228 (39%), Gaps = 11/228 (4%)
Query: 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD 906
+ + + +L+ L D+K L +++++ ++ + + + + L R ++
Sbjct: 40 QTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFE 98
Query: 907 SNKNLVMATLITLGAVASAM----GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962
+N ++ L + + P ++ + +L G+ K +MR +++
Sbjct: 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNV 158
Query: 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSK--QLTGLSGFPDAAHLLKPASIA 1020
V KM P + AL A R + + G+S + + K +
Sbjct: 159 LSDVVGPLKMTPMLLDALKSKN--ARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPF 215
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1068
+ DK +VR AA +V + G + + K + +L+ ERIK
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEG-DQMWKAAGRMADKDKSLVEERIK 262
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 2e-16
Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 10/228 (4%)
Query: 282 LTPLEKSGFWEGVKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIA 340
L K + + + A+ L + ++ R + + + + N A
Sbjct: 43 LGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPA 102
Query: 341 VAVEAIQAIGNLARGLRTH----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396
++ ++ + +R +P LL K E K + S+ + +
Sbjct: 103 ALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV 162
Query: 397 GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND 456
+ + ++K+K RS L + + I + + + + D
Sbjct: 163 VGPLKM--TPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK--SLSVEKTVAPFVGD 218
Query: 457 GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504
VR+AA +VL A K G + + ++ ++ D ++ + E I +G
Sbjct: 219 KDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERIKRTG 265
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 208 bits (529), Expect = 3e-60
Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 21/272 (7%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALC-----DSITDPKDNRIRELGP 55
MS EE+ + LP E+RL +K WK R EA +L L D D
Sbjct: 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPT 58
Query: 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAK------EVCDAIAAKCLTG-RPK 108
LF + + DSN Q++A+ AL + + A + + + A + K LT R
Sbjct: 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT 118
Query: 109 TVEKAQAVFMLWVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPK 167
T ++ + + L+ ++ ++++ + K+ K + A + +++ ++ FG + +
Sbjct: 119 TKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQ 178
Query: 168 ----RILKMLPELFDHQDQNVRASSKGLTLELCRWIG--KDPVKTILFEKMRDTMKKELE 221
+LK +P+L H D+NVR+ + L +E+ + G D ++ ILF+K++ K+L
Sbjct: 179 TFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238
Query: 222 VELVNVSGTARPTRKIRAEQDKELGQELISED 253
V ++ + + +EL ++ E+
Sbjct: 239 KLFAKVGDEPSSSKMLFEWEKRELEKKRSQEE 270
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 98.7 bits (245), Expect = 2e-22
Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 35/270 (12%)
Query: 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSV 639
E+V+ + + LEE +L +WK RLEA L Q
Sbjct: 3 GEEEVDYTTLPLEE---------------RLTYKLWKARLEAYKELNQLFRNSVGDISRD 47
Query: 640 EILVRLVCMLPGW----SEKNVQVQQQVIEVINYL------AATATKFPKKCVVLCLLGI 689
+ + + ++ NV Q+Q I +N L ++ + +
Sbjct: 48 DNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLL 107
Query: 690 SERV---ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV 746
E+ + T+ +M C+ + L + K PK+++ + +
Sbjct: 108 VEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELM 167
Query: 747 EDFGVSHLKLKDLI-DFCKDTG--LQSSAAATRNATIKLLGALHKFVGPDI----KGFLA 799
FG++++ ++ + + K R+ T+ L+ ++K G + +
Sbjct: 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFK 227
Query: 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVR 829
+KP + L + K E +
Sbjct: 228 KLKPIQVKDLHKLFAKVGDEPSSSKMLFEW 257
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 2e-13
Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 25/264 (9%)
Query: 1175 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-----SNTTCLL 1229
L RL +K +++ + L + + DI +I + W SN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 1230 KVLEFLPELFDTLRDEGYSLTE--SEAAVFLPCLVEKS-GHNIEKVREKMRELTKQIVNF 1286
+ + L L D + + + P LVEK + + + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 1287 -YSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV----ASLTA 1341
S T+++ ++ K + + V L+ G L + L
Sbjct: 134 DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG 193
Query: 1342 ERDGEIRKAALNTLATGYKILGEDIWR----YVGKLTDAQKSMLDDRFKWKVREMEKKKE 1397
D +R +N + YK+ G + KL Q L F K
Sbjct: 194 HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLF--------AKVG 245
Query: 1398 GKPGEARAALRRSVRENGSDIAEQ 1421
+P ++ RE +++
Sbjct: 246 DEPSSSKMLFEWEKRELEKKRSQE 269
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 5e-13
Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 16/216 (7%)
Query: 298 KWSERKDAVAELTKLASTKRIAPGD------FTEVCRTLKKLITDVNIAVAVEAIQAI-- 349
W R +A EL +L + + ITD N+ +AI A+
Sbjct: 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNS 81
Query: 350 ----GNLARGLRTHFSGSSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404
+ H P+L+EK L + T + ++ ++
Sbjct: 82 LIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL-DTSITQS 140
Query: 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIET--SSKAAVLKVHKDYVPICMECLNDGTPEVR 462
VE V + K+P + + N V + + V + + + G VR
Sbjct: 141 VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVR 200
Query: 463 DAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 498
+++ I K G ++ ++ +
Sbjct: 201 SQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKD 236
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 3e-09
Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 24/266 (9%)
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF----GGLRGRLYDSNKNLVM 913
L + L WK RLE+ + +N++ + I +++ + DSN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 914 ATLITLGAVASAMGPAVEKSSKG-------VLSDILKCLGDNKKHMRECTLTVLDAWLAA 966
++ L ++ A + K++ + K L ++ + +++ + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 967 VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL-----TGLSGFPDAAHLLKPASIAM 1021
+ + KL + + + + + T ++ LLK
Sbjct: 134 DTSITQSVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA 192
Query: 1022 TDKSSDVRKAAEACIVEILRAGG------QETIEKNLKDIQGPALALILERIKLNGASQV 1075
+VR IVEI + G +E + K LK IQ L + ++ + S
Sbjct: 193 GHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVG-DEPSSS 251
Query: 1076 SMGPTSKSSSKVPKSASNGVSKHGNR 1101
M + K + + H +
Sbjct: 252 KMLFEWEKRELEKKRSQEEEAHHHHH 277
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 1e-57
Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 16/245 (6%)
Query: 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL--TKLASTKRI--APGDFTEV 326
++ IL L K F E + ++KW +R +A+ E + L+ TK++ +++ +
Sbjct: 3 HMASMLPEETILDKLPKD-FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL 61
Query: 327 CRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH--FSGSSRFLLPVLLEKLKEKKPTVA 383
+I D NI A Q++ + L+T + LL++ KEKKP+V
Sbjct: 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVI 121
Query: 384 ESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-- 436
E++ + L + K A D+++D+ +K+K P +R ++
Sbjct: 122 EAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181
Query: 437 -AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495
+ + VPI ++ +ND P +R F A + K GM +++E LD+++R K
Sbjct: 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKK 241
Query: 496 LSEMI 500
+ E +
Sbjct: 242 IEETV 246
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 6e-21
Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 20/244 (8%)
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT--GELFGGL 900
LP E I K + + S WK R+E++E + K+++ L G
Sbjct: 6 SMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIY 65
Query: 901 RGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTL 957
+ D+N V ++ + + V + +L + K + E
Sbjct: 66 GHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIR 125
Query: 958 TVL-------DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
L D ++ + M+ + + + R + + +
Sbjct: 126 KALLTICKYYDPLASSGRNEDMLKDILEHMKHKT--PQIRMECTQLFNASMKEEKDGYST 183
Query: 1011 AHLLKPASIA------MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL 1064
+ + D +R +++ G T K L+ + I
Sbjct: 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIE 243
Query: 1065 ERIK 1068
E +K
Sbjct: 244 ETVK 247
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 1e-16
Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 31/249 (12%)
Query: 1166 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-------EVLDILLRWFVL 1218
++ +D R+ S+ +K +V+ LE ++ S K + +L I
Sbjct: 12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ- 70
Query: 1219 QFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRE 1278
+N + + + + D L+ G+S + ++ L++++ V E +R+
Sbjct: 71 --KDANIQAVALAAQSVELICDKLKTPGFS--KDYVSLVFTPLLDRTKEKKPSVIEAIRK 126
Query: 1279 LTKQIVNFYSATKT-------LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLK 1331
I +Y + L ILE ++ K + R+EC L + S +
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186
Query: 1332 SLQ-----IVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFK 1386
L+ IV + + IR + A KI G K + LD+ +
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM---NTFVKTLEH----LDNLKR 239
Query: 1387 WKVREMEKK 1395
K+ E K
Sbjct: 240 KKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 2e-15
Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 20/235 (8%)
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGW--SEKN 656
+P D ++ S+ WK+R+EA+ V + L + + L+ + + N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 657 VQVQQQVIEVINYLAAT--ATKFPKKCVVLCLLGISERVADIKT--RAHAMKCLTTFSEA 712
+Q + + + F K V L + +R + K K L T +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 713 VGPGFIFERLYKIMKD------HKNPKVLSEGILWMVSAVEDFGVSHLKL-----KDLID 761
P R ++KD HK P++ E +++++ + L +++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGP-DIKGFLADVKPALLSALDAEYEK 815
+ + A R + L K G L + ++ +
Sbjct: 195 IVIQI-VNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 6e-08
Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 21/230 (9%)
Query: 12 KKLP--WEDRLLHKNWKVRNEA----NIDLAALCDSITDPKDNRIRELGPLFKKTVADSN 65
KLP +++R+ WK R EA + + + N LG D+N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 66 APVQDKALDALIAYLKA--ADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL 123
A ++ + Y V + + +P +E + + +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 124 -------EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP-----KRILK 171
+ L + + +K+K + + + ++ E ++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 172 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
++ ++ + +R L + G + L E + + +K++E
Sbjct: 195 IVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTL-EHLDNLKRKKIE 243
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 179 bits (454), Expect = 1e-50
Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 6/233 (2%)
Query: 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRT 329
+L+DPVDIL+ + K F++ ++ KW+ RK+++ L KL ++ G++ +
Sbjct: 2 SHMDLLDPVDILSKMPKD-FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSA 60
Query: 330 LKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQ 388
LKK+IT D N+ + A + + LA+GL FS + +P LLEK KEKKP V +L +
Sbjct: 61 LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALRE 120
Query: 389 TLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE-TSSKAAVLKVHKDYV 447
+ A++ +L E + S+ NK P V+S T ++ + T A K+ K
Sbjct: 121 AIDAIYA--STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLT 178
Query: 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500
++ LN+ P VRD++ L + K +G + + + +D ++ K+ E
Sbjct: 179 TSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQ 231
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 8/231 (3%)
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902
D L DI K LE W +R ES+E + K+L + +++ G L L+
Sbjct: 5 DLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKK 63
Query: 903 RLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
+ DSN LV L +A + + + +L+ + K ++ +D
Sbjct: 64 VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP----A 1017
A A+ L+ + +L++ + + ++++ LT LLK
Sbjct: 124 AIYASTSLEAQQESIVESLSNKN--PSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1068
+ + VR ++ + +++ G + + L D+ +A I E +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 9/226 (3%)
Query: 1166 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-SN 1224
D++ +D + +L + + + LE+L+K L K L+ K SN
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1225 TTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 1284
+ + L L L + A+ +P L+EK V +RE I
Sbjct: 71 VVLVAMAGKCLALLAKGLAKR----FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIY 126
Query: 1285 NFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE--ISGQLKSL-QIVASLTA 1341
S I+E L +KN + E + + LK L +
Sbjct: 127 ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN 186
Query: 1342 ERDGEIRKAALNTLATGYKILGED-IWRYVGKLTDAQKSMLDDRFK 1386
E D +R ++ L T K++G+ + + + + + + + +
Sbjct: 187 EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 2e-16
Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 7/216 (3%)
Query: 12 KKLP--WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVA-DSNAPV 68
K+P + D+L K W +R E+ L L ++ L KK + DSN +
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73
Query: 69 QDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDV 128
A L K YA ++ K +P V + +++
Sbjct: 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA 133
Query: 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVR 185
+ + +++ NK + +AL+ + K + L + + D VR
Sbjct: 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193
Query: 186 ASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
SS L + +G V +L + +++
Sbjct: 194 DSSAEALGTLIKLMGDKAVTPLL-ADVDPLKMAKIK 228
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 1e-15
Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 12/224 (5%)
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLPGWSEKNV 657
S +P D +L+ W R E++ L + + L+ ++ L ++ + NV
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI--TKDSNV 71
Query: 658 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGP 715
+ + + LA K C+ + E+ + K + + +
Sbjct: 72 VLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 716 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSA 772
E + + + +KNP V SE L++ A+ + L LK L L
Sbjct: 132 EAQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV-KTLNEPD 189
Query: 773 AATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSALDAEYEK 815
R+++ + LG L K +G + LADV P ++ + EK
Sbjct: 190 PTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEK 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 2e-16
Identities = 118/766 (15%), Positives = 233/766 (30%), Gaps = 249/766 (32%)
Query: 748 DF--GVSHLKLKDLI-----DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLAD 800
DF G + KD++ F + D K D
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF--------------------------DCK----D 37
Query: 801 VKPALLSAL-DAEY-----EKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854
V+ S L E K+ GT+ T+ + +E++ KF
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---------------QEEMVQKF 82
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914
V+ + ++K + I+ + QP+ ++ R RLY+ N+
Sbjct: 83 ----VEEVLRINYKFLMSPIKTEQR---------QPSMMTRMYIEQRDRLYNDNQ----- 124
Query: 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK---H-MRECTLTVLDAWLAAVHLD 970
+ V ++ K L L L K + T W+A
Sbjct: 125 -VFAKYNV-----SRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKT----WVAL---- 168
Query: 971 KMVPYVTTALTDAKLGAEGRKDLFD----WLS-----------KQLTGLSGFPDAAHLLK 1015
K+ + D WL+ + L L + +
Sbjct: 169 -------DVCLSYKV-----QCKMDFKIFWLNLKNCNSPETVLEMLQKLL------YQID 210
Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL------ERIK- 1068
P + +D SS+++ + E+ R K ++ L L+L +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYEN----CL-LVLLNVQNAKAWNA 261
Query: 1069 LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQS 1128
N + ++ + T++ V S + H S + P+ + S+
Sbjct: 262 FNLSCKILL--TTRFKQ-VTDFLSAATTTH-----ISLDHHSMTLTPDEVKSL------- 306
Query: 1129 QALLNVKDSNKED--RE---------RMVVRRFKFEDP-RIEQIQELENDMMKYFREDLH 1176
LL D +D RE ++ + + + + + D + E
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSL 363
Query: 1177 RRLLSTDFKKQVDGLEMLQKALPSIRKDI-IEVLDILLRWFVLQFCKSNTTCLLKVLEFL 1235
L +++K D L + + I +L ++ W + ++ V+ L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLI--W-----FDVIKSDVMVVVNKL 411
Query: 1236 PELFDTLRDEGYSLTE---SEAAVFLP-CLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1291
YSL E E+ + +P +E E L + IV+ Y+ K
Sbjct: 412 ---------HKYSLVEKQPKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPK 457
Query: 1292 TLPYILEGLRSKNNRTRIECVDLVGFL---IDHHGAEISGQLKSLQIVASLTAERDGEIR 1348
T ++ +D + I HH LK+++ ER R
Sbjct: 458 TFD---------SDDLIPPYLD--QYFYSHIGHH-------LKNIE-----HPERMTLFR 494
Query: 1349 KAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDD--RFKWKVREMEKKKEGKPGEARAA 1406
L+ ++ L + I R+ +A S+L+ + K + + K A
Sbjct: 495 MVFLD-----FRFLEQKI-RHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNA 547
Query: 1407 LRRSVRENGSDIAE-QSGDVSQSVSGPTLMRRN---YGHSELHVER 1448
+ + + ++ + D+ + LM + + + V+R
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRI----ALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.8 bits (201), Expect = 2e-15
Identities = 100/756 (13%), Positives = 204/756 (26%), Gaps = 249/756 (32%)
Query: 1154 DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR-KDIIEVLDIL 1212
D + Q D++ F + D K D +M + L II D +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF---DCK---DVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 1213 LRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272
LF TL + E F+ ++ N + +
Sbjct: 62 SGTLR--------------------LFWTLLSKQ----EEMVQKFVEEVLRI---NYKFL 94
Query: 1273 REKMRELTKQ---IVNFYSATKTLPYILEGLRSKNNRTRIECVD-----LVGFLIDH--- 1321
++ +Q + Y + Y + +K N +R++ L+ L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNV 153
Query: 1322 --HGAEISGQLKSLQIVASLTAE--RDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQ 1377
G SG K+ + + +++ +KI W + +
Sbjct: 154 LIDGVLGSG--KT-----WVALDVCLSYKVQCKM------DFKIF----WLNLKNCNSPE 196
Query: 1378 KSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRR 1437
+ EM +K L + N + ++ S ++ + R
Sbjct: 197 TVL----------EMLQK-----------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 1438 NYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDP 1497
S+ + L L
Sbjct: 236 RLLKSKPY------ENCL------------L----------------------------- 248
Query: 1498 EGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQ 1557
V+ V++A K F+ SCK L+ T + K++ +
Sbjct: 249 ---VLLN-VQNA---------KAWNAFNL--------SCK----ILLTT-RFKQVTDFLS 282
Query: 1558 ESTLDSLITELLLWLLDERVPHMDDGSQLL-KALNVLMLKILDNADRTSSFVV-LI-NLL 1614
+T + + L D+ LL K L+ + T+ + +I +
Sbjct: 283 AATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 1615 RPLDPSRWPSPASNESFAARNQ-RFSDLVVKCLIKLTKVLQSTIY--------DVD---- 1661
R + W +++ N + + ++ L L ++
Sbjct: 338 RD-GLATW------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 1662 -LDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHEL-----VKLRGAAIKGHLS 1715
L I + + + ++ + + + +P + + + VKL H S
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYAL-HRS 448
Query: 1716 MV----------PIDMKPQPI---ILAYIDLNLETLAAARMLTSTGPGGQT--------- 1753
+V D+ P + ++I L + +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHI---------GHHLKNIEHPERMTLFRMVFLD 499
Query: 1754 -HW-------GDSAANNPTSATNSADAQLKQELAAIFKKIG--DKQTCTIGLYELYRI-T 1802
+ +A N S N+ QLK I ++ I + L +I
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDF-LPKIEE 557
Query: 1803 QLY--PKVDI--FAQLQNASEAFRTYIRDGLAQMEK 1834
L D+ A L EA + Q+++
Sbjct: 558 NLICSKYTDLLRIA-LMAEDEA---IFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 2e-12
Identities = 100/735 (13%), Positives = 204/735 (27%), Gaps = 241/735 (32%)
Query: 242 DKELGQ-ELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
D E G+ + +D+ +D ++ D D+ +
Sbjct: 8 DFETGEHQYQYKDILS-------VFEDAFVDNFDCKDVQDMPKSILSK-----------E 49
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVC----RTLKKLITDV---NIAVAVEAIQAIGNLA 353
E + ++ T R+ F + ++K + +V N + I+
Sbjct: 50 EIDHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 354 RGLRTHFSGSSRFLL---PVLLEKL----KEKKPTVAESLTQ-------TLQAMHKAG-- 397
+ + R L + K + + ++L + + + +G
Sbjct: 106 SMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 398 CLNLVDVVED--VKTSVKNKVPLVRSLTLNWVTF--CIETSSKAAVL-----KVHKDYVP 448
+ +DV V+ + K+ W+ C + +L ++ ++
Sbjct: 165 WV-ALDVCLSYKVQCKMDFKI--------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD-- 506
+D + ++ S+ A + + + +P E + L +V+ K +
Sbjct: 216 -----RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLS 265
Query: 507 ----VATGTSS--ARVQTSGGSVPSVEASESSFVRKSAASMLS---GKRPVSAAPASKKG 557
+ T + + + S++ + S+L RP
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 558 GPVKPS----AKKDGSG------KQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607
P + S + +DG KLT E SL +E PA+
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------IESSLNVLE-------PAEY- 371
Query: 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
++ + + +V S I L+ ++ W + V+
Sbjct: 372 --------RKMFDRL--------SV--FPPSAHIPTILLSLI--WFDVIKSDVMVVVN-- 409
Query: 668 NYLAATATKFPKKCVVLC--------LLGISERV---ADIKTRAHAMKCLTTFSEAVGPG 716
K K +V + I + + + H
Sbjct: 410 --------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS------------- 448
Query: 717 FIFERLYKIMK----DHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-----------LID 761
I + Y I K D P L + HLK + +D
Sbjct: 449 -IVDH-YNIPKTFDSDDLIPPYLDQYFYS-------HIGHHLKNIEHPERMTLFRMVFLD 499
Query: 762 F-------CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE 814
F D+ +A + + L L + K ++ D P L
Sbjct: 500 FRFLEQKIRHDS----TAWNASGSILNTLQQLKFY-----KPYICDNDPK-YERLVNAIL 549
Query: 815 KNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESI 874
F +P + E+ I K+T L +L + D
Sbjct: 550 D--F----LP----KIEENL---------------ICSKYTDLLRIALMAED-------- 576
Query: 875 EAVNKILEEANKRIQ 889
I EEA+K++Q
Sbjct: 577 ---EAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 3e-10
Identities = 61/434 (14%), Positives = 138/434 (31%), Gaps = 134/434 (30%)
Query: 1496 DPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYA 1555
D E KD ++S + FD CK V + + + +
Sbjct: 8 DFETGEHQYQYKD---ILSVFEDAFVDNFD----------CKDVQDMPKSILSKEEIDHI 54
Query: 1556 VQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS-SFVVLINLL 1614
+ S T L W L + ++++ K ++ R + F L++ +
Sbjct: 55 IMSKDAVSG-TLRLFWTL------LSKQEEMVQ-------KFVEEVLRINYKF--LMSPI 98
Query: 1615 RPLDPSRWPSPASNESFAAR------NQRFSDLVV---KCLIKLTKVLQSTIYDVDLDRI 1665
+ R PS + R NQ F+ V + +KL + L R
Sbjct: 99 K--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-------LRP 149
Query: 1666 LQSIHVYLQELGM---------------EEIRRR---------AGADDKP---LRMVKTV 1698
+++ + G+ +++ + + P L M++ +
Sbjct: 150 AKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 1699 LHEL-------------VKLRGAAIKGHLSMVPIDMKPQP---IILAYIDL-NLETLAA- 1740
L+++ +KLR +I+ L + + KP ++L ++ N + A
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLL--NVQNAKAWNAF 262
Query: 1741 ---ARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKK-----IGD--KQT 1790
++L +T T + +A S + + E+ ++ K D ++
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 1791 CT-----IGL--------------YELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ 1831
T + + ++ +L ++ + +E +R L+
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDR-LSV 380
Query: 1832 MEKNAAAGRTPSSV 1845
+A P+ +
Sbjct: 381 FPPSA---HIPTIL 391
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 4e-10
Identities = 87/551 (15%), Positives = 161/551 (29%), Gaps = 148/551 (26%)
Query: 2 SEE-EKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
EE + ++ + RL W + ++ + + + L
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVLRI------NYKFLMSPI 98
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAK-EVCDAIAAKCLTGRPKTVEKAQAVFML 119
+ P I D +AK V R + K + +
Sbjct: 99 KTEQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNVS----------RLQPYLKLRQALL- 145
Query: 120 WVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG------AKIIPPKRILKM 172
EL A +V +D + + K VA V + V Q +F P+ +L+M
Sbjct: 146 --ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 173 LPELFDHQDQNVRASSKGL-TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG-- 229
L +L D N + S ++L + ++ +L K + L V L+NV
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLV-LLNVQNAK 257
Query: 230 -------------TARP---TRKIRAEQDKELGQELISEDVGPGPSEE--------STAD 265
T R T + A + + S + P + D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVK--ATKWSE-RKDAVAELTKL--ASTKRIAP 320
+P E+ + P S E ++ W + +LT + +S + P
Sbjct: 318 LPREV--------LTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 321 GDFTEVCRTLKKLITDVNIAVAV----------EAIQAIGNL--ARGLRTHFSGSSRFLL 368
++ ++ L +I + + + N L S +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN-------------- 414
P + +LK K A+H+ ++VD KT +
Sbjct: 429 PSIYLELKVKLE--------NEYALHR----SIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 415 ------------KVPLVRSLTLN--WV--------TFCIETSSKAAVL---KVHKDYVPI 449
++ L R + L+ ++ T + S L K +K Y+
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-- 534
Query: 450 CMECLNDGTPE 460
C ND E
Sbjct: 535 ---CDNDPKYE 542
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 1e-08
Identities = 89/607 (14%), Positives = 176/607 (28%), Gaps = 171/607 (28%)
Query: 582 EDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI 641
+D+ S +S EEI+ + S D V W + +++ VE V L + +
Sbjct: 39 QDMPKSILSKEEIDHIIMS---KDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKF 93
Query: 642 LVRLVCMLPGWSEKNVQ---VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKT 698
L+ + Q + + IE + L F K V + ++
Sbjct: 94 LMS------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQ 142
Query: 699 RA-----------HAMK-----CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 742
+ + + +K + I W+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVA--LDVC-------------LSYKVQCKMDFKIFWL 187
Query: 743 VSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 799
+ + L+ L ++ + ++ IKL +H + +++ L
Sbjct: 188 -----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHS-IQAELRRLLK 239
Query: 800 DVKP---ALLSALDAEYEK---NPFEG---TVVPKKTVRASESTSSVSSGGSDGLPREDI 850
KP LL L N F ++ T R + T +S+ + + +
Sbjct: 240 S-KPYENCLL-VLLNVQNAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHH 294
Query: 851 SGKFTPT-----LVKSLE-------------SP-----------DWKVRLE-----SIEA 876
S TP L+K L+ +P D + + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 877 VNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL---------GAVASAMG 927
+ I+E + ++PA ++F L ++ + ++ L + V + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 928 P--AVEKSSKG---VLSDI---LKCLGDNKK--HMR--------------ECTLTVLD-- 961
VEK K + I LK +N+ H + LD
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 962 -AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFD--WLSKQL-------TGLSGFPDAA 1011
HL + + R D +L +++ +
Sbjct: 473 FYSHIGHHLKNIEH--------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI-QGPALALILER--IK 1068
LK + D + A I++ L + I D+ + +AL+ E I
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLR---IALMAEDEAIF 580
Query: 1069 LNGASQV 1075
QV
Sbjct: 581 EEAHKQV 587
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 4e-15
Identities = 99/633 (15%), Positives = 198/633 (31%), Gaps = 89/633 (14%)
Query: 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--------MRPLERSIEKLDDVRRNKL 496
+ + ++ L + ++R + L+ IA ++G + L +I D+V L
Sbjct: 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL-AL 68
Query: 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 556
+E + V V + S+ E + VR A L + S
Sbjct: 69 AEQLGTFTTLVG---GPEYVHCLLPPLESLATVEETVVRDKAVESL--RAISHEHSPSDL 123
Query: 557 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV-- 614
P K+ G TS+ + R+ S + A+ ++
Sbjct: 124 EAHFVPLVKRLAGGDWFTSRTSAC--------GLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 615 --WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 672
R A S L + + ++ + EI+ + S++ V+ +E
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA---SDEQDSVRLLAVEA---CVN 229
Query: 673 TATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERL---YKIM 726
A P++ + ++ + A + R T +AVGP L ++ +
Sbjct: 230 IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 289
Query: 727 KDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLL 783
+V + + E+ + + ++ K+ + + ++A ++
Sbjct: 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVI 348
Query: 784 GALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843
L +G D + + P L+ L E + V + + + V
Sbjct: 349 MGLSPILGKDN--TIEHLLPLFLAQLKDECPE-------VRLNIISNLDCVNEV------ 393
Query: 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 903
+ +S P +V+ E W+VRL IE + + + +L
Sbjct: 394 -IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE---KLNSLCMAW 449
Query: 904 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963
L D + A L + G E + ++ +L GD R TL ++
Sbjct: 450 LVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507
Query: 964 LAAVHLD----KMVPYVTTALTD---------AKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
D M+P V D AK + + L
Sbjct: 508 SEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK----IGPILDNS--------TL 555
Query: 1011 AHLLKPA-SIAMTDKSSDVRKAAEACIVEILRA 1042
+KP D+ DV+ A+ + + A
Sbjct: 556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 3e-14
Identities = 71/477 (14%), Positives = 152/477 (31%), Gaps = 51/477 (10%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKAL 73
LP+ ++ +V L + P+ + L P + V+DKA+
Sbjct: 51 LPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE--YVHCLLPPLESLATVEETVVRDKAV 108
Query: 74 DALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVM 133
++L A + + + G T + +
Sbjct: 109 ESLRAISHEHSPSD---LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165
Query: 134 EKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVRASSKG 190
+ +N + L EF + I+ M L + +VR +
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVE 225
Query: 191 LTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 250
+ + + + ++ ++ ++ +R + + R + A++ EL + +
Sbjct: 226 ACVNIAQLLPQEDLEALVMPTLRQAAEDKSW-----------RVRYMVADKFTELQKAV- 273
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
PEI + +LV L K E A V E
Sbjct: 274 ----------------GPEITKTDLVP---AFQNLMKDCEAEVRAAAS-----HKVKEFC 309
Query: 311 KLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370
+ S +++ +K+L++D N V I L+ L + LLP+
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPL 367
Query: 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVT 428
L +LK++ P V ++ L +++ + + ++ + ++ VR + ++
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427
Query: 429 FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485
+ +CM L D +R+AA S L + + G +I
Sbjct: 428 LLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 2e-11
Identities = 59/482 (12%), Positives = 156/482 (32%), Gaps = 52/482 (10%)
Query: 590 SLEEIESRLGS------LIPADTVGQLKSAVWKE---RLEAISSLRQQVEAVQNLDQSVE 640
L I LG L+P L ++ E L L V +
Sbjct: 33 KLSTIALALGVERTRSELLPF-----LTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHC 87
Query: 641 ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRA 700
+L L + + + V+ + +E + ++ + + + + +R+A
Sbjct: 88 LLPPLESLA---TVEETVVRDKAVESLRAISH---EHSPSDLEAHFVPLVKRLAGGDWFT 141
Query: 701 HAMKCLTTFSEAVGPG-----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 755
FS + ++ + P V + + + ++K
Sbjct: 142 SRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK 201
Query: 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815
++I + + R ++ + + + + A V P L A + + +
Sbjct: 202 -SEIIPMFSN-LASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWR 257
Query: 816 NPFEGTVVPKKTVR--ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLES 873
VR ++ + + + E P ++ + +VR +
Sbjct: 258 ------------VRYMVADKFTELQKA----VGPEITKTDLVPAFQNLMKDCEAEVRAAA 301
Query: 874 IEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932
V + E + + ++ ++ + D+N+++ A + ++ +G +
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN 359
Query: 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEG--R 990
+ + +L L L D +R ++ LD + + ++ + A+ + A+ R
Sbjct: 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVR 419
Query: 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
+ +++ L L + D +R+AA + + +++ G+E
Sbjct: 420 LAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHA 479
Query: 1051 NL 1052
+
Sbjct: 480 TI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 3e-11
Identities = 77/461 (16%), Positives = 148/461 (32%), Gaps = 49/461 (10%)
Query: 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669
L++ + RL +I L A+ E+L L + + E V + +
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVL-----LALAEQ 71
Query: 670 LAATATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 726
L T V CLL E +A + R A++ L S P + ++
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV 131
Query: 727 K--DHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIK 781
K + + S S +K + + C D R A
Sbjct: 132 KRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD-----DTPMVRRAAAS 186
Query: 782 LLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841
LG K + D +++ P + E + V V A + + +
Sbjct: 187 KLGEFAKVLELDN--VKSEIIPMFSNLASDEQDS-------VRLLAVEACVNIAQL---- 233
Query: 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
LP+ED+ PTL ++ E W+VR + ++ + I +L +
Sbjct: 234 ---LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT---DLVPAFQ 287
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTV 959
+ D + A + + ++ +L I + + D +H++ +V
Sbjct: 288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347
Query: 960 LDAWLAAV-----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014
+ L+ + ++ ++P L D E R ++ L + + LL
Sbjct: 348 IMG-LSPILGKDNTIEHLLPLFLAQLKD--ECPEVRLNIISNLDCVNEVIGIRQLSQSLL 404
Query: 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055
D VR A + + G E ++ L +
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 2e-10
Identities = 63/466 (13%), Positives = 136/466 (29%), Gaps = 64/466 (13%)
Query: 22 HKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLK 81
VR A L + DN E+ P+F +D V+ A++A + +
Sbjct: 175 DDTPMVRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232
Query: 82 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKN-- 139
+ V + + F + ++ + A +N
Sbjct: 233 LLPQED--LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290
Query: 140 -----KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
+V A + + LS + + +IL + EL +Q+V+++ + +
Sbjct: 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350
Query: 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD--KELGQELISE 252
L +GKD L +K E V I + +G +S+
Sbjct: 351 LSPILGKDNTIEHLLPLFLAQLKDECP----EVRLNI-----ISNLDCVNEVIGIRQLSQ 401
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
+ P + L + KW R + + L
Sbjct: 402 SLLP------------------------AIVELAEDA--------KWRVRLAIIEYMPLL 429
Query: 313 ASTKRIAPGDFTE-VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371
A ++ F E + + D A+ A + L ++ ++P +
Sbjct: 430 A--GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATIIPKV 485
Query: 372 LEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVTF 429
L + + + + + ++ ++ V + V VR +
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 430 CIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
+ + + PI + D +V+ A L ++ +
Sbjct: 546 IGPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 3e-08
Identities = 88/640 (13%), Positives = 179/640 (27%), Gaps = 126/640 (19%)
Query: 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 827
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTIYDEDE------------- 63
Query: 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V + + + + + + P L + VR +++E++ I E
Sbjct: 64 VLLALAEQLGTF--TTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE---- 117
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLV-MATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946
P+ F L RL + + + AV+ +
Sbjct: 118 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE---LRQYFRNLCS 174
Query: 947 DNKKHMRECTLTVLDAWLAAV----HLDKMVPYVTTALTD-----------------AKL 985
D+ +R + L + + +++P + +D L
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
Query: 986 GAEGRKDLFDWLSKQLTG----------LSGFPDAAHLLKPASIA----------MTDKS 1025
E + L +Q F + + P M D
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294
Query: 1026 SDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSS 1085
++VR AA + E + E ++ IL IK S ++
Sbjct: 295 AEVRAAASHKVKEFCENLSADCREN-------VIMSQILPCIKEL---------VSDANQ 338
Query: 1086 KVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERM 1145
V + ++ + I + + + V+ + N+ N+
Sbjct: 339 HVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE------ 392
Query: 1146 VVRRFKFEDPRIEQIQELENDMMKYFRE-------DLHRRLLSTDFKKQVDGL--EMLQK 1196
V+ + + I EL D R L +L F ++++ L L
Sbjct: 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 452
Query: 1197 ALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAV 1256
+ +IR+ L L+ F ++ + +P++ D Y +
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHA---------TIIPKVLAMSGDPNYLHRMT-TLF 502
Query: 1257 FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVG 1316
+ L E G TK + LP +L R +
Sbjct: 503 CINVLSEVCG---------QDITTKHM---------LPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 1317 FLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLA 1356
+ I+ LT ++D +++ A L
Sbjct: 545 KIGPILDNSTLQSEV-KPILEKLTQDQDVDVKYFAQEALT 583
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 4e-08
Identities = 98/634 (15%), Positives = 206/634 (32%), Gaps = 105/634 (16%)
Query: 277 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKL 333
D D L P+ + ++ R +++ +L+ +A A G +E+ L
Sbjct: 4 DGDDSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIAL----ALGVERTRSELLPFLTDT 57
Query: 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAM 393
I D + V + + +G + LLP L ++ V + ++L+A+
Sbjct: 58 IYDEDE-VLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 114
Query: 394 HKAGCLNLVDVVEDVKTSV----KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449
+ + D+ V R+ + C S A V +
Sbjct: 115 --SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQY 168
Query: 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI-----EKLDDVRRNKLSEMIAGSG 504
+D TP VR AA S L AK + + ++ I D ++ + + +
Sbjct: 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD-EQDSVRLLAVEAC 227
Query: 505 GDVATGTSSARVQTSGGSVPSVEA---SESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561
++A ++ +P++ +S VR A +
Sbjct: 228 VNIAQLLPQEDLEAL--VMPTLRQAAEDKSWRVRYMVADKFT------------------ 267
Query: 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621
+L +A E++ ++ +L +K + R A
Sbjct: 268 --------------ELQKA----VGPEITKTDLVPAFQNL--------MKDCEAEVRAAA 301
Query: 622 ISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATK--FP 678
+++ E + + I+ +++ C+ S+ N V+ + VI L+ K
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTI 361
Query: 679 KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHKNPKV 734
+ + L L + + ++ R + + L +E +G + + ++ +D +V
Sbjct: 362 EHLLPLFLAQLKDECPEV--RLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA-KWRV 418
Query: 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
I +M GV + L C L A R A L L + G +
Sbjct: 419 RLAIIEYMPLLAGQLGVEFFD-EKLNSLC-MAWLVDHVYAIREAATSNLKKLVEKFGKE- 475
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854
++ + A P R +T + S+ ++ +
Sbjct: 476 -----WAHATIIPKVLAMSGD--------PNYLHR--MTTLFCINVLSEVCGQDITTKHM 520
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 888
PT+++ P VR +++ KI +
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 65/478 (13%), Positives = 144/478 (30%), Gaps = 101/478 (21%)
Query: 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALI 77
D L +++ ++R + L+ + LG ++ L+
Sbjct: 17 DELRNEDVQLRLNSIKKLSTIA-----------LALGV--------------ERTRSELL 51
Query: 78 AYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA-VDVFLDVMEKA 136
+L D + + + F V V L +E
Sbjct: 52 PFLTDTIYDEDEVLLALAEQLGT----------------FTTLVGGPEYVHCLLPPLESL 95
Query: 137 IKNK---VAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
+ V V ++ + S + + ++ L R S+ GL
Sbjct: 96 ATVEETVVRDKAVESLRAISHEHSPSDLEAH----FVPLVKRLAGGDWFTSRTSACGL-- 149
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISED 253
++ + ++ +K EL N+ T +R +LG+ ++
Sbjct: 150 -----------FSVCYPRVSSAVKAELRQYFRNLCS--DDTPMVRRAAASKLGE--FAKV 194
Query: 254 VGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA 313
+ + +++ P F + S R AV +A
Sbjct: 195 LEL---DNVKSEIIPM--------------------FSNLASDEQDSVRLLAVEACVNIA 231
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373
V TL++ D + V L + + + + L+P
Sbjct: 232 Q-LLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTD--LVPAFQN 288
Query: 374 KLKEKKPTVAESLTQTLQAM------HKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
+K+ + V + + ++ + + ++ +K V + V+S + +
Sbjct: 289 LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVI 348
Query: 428 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485
K ++ +P+ + L D PEVR S L + + +G+R L +S+
Sbjct: 349 MGLSPILGKDNTIE---HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 4e-07
Identities = 68/474 (14%), Positives = 150/474 (31%), Gaps = 71/474 (14%)
Query: 969 LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDV 1028
+++P++T + D E L + L T + G LL P T + + V
Sbjct: 47 RSELLPFLTDTIYDED---EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV 103
Query: 1029 RKAAEACIVEILRAGGQETIEKNL------------KDIQGPALALILERI-KLNGASQV 1075
R A + I +E + + A L +++ A +
Sbjct: 104 RDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163
Query: 1076 SMGPT-----SKSSSKVPKSASNGVSK----HGNRAISSRVIP--TKGARPESIMSVQDF 1124
+ S + V ++A++ + + + S +IP + A E SV+
Sbjct: 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD-SVRLL 222
Query: 1125 AVQSQALLNVKDSNKEDRERMV--VRRFKFEDP----RIEQIQELENDMMKYFREDLHRR 1178
AV++ + ++ ++ +R+ ED R + + K ++ +
Sbjct: 223 AVEACVNIAQLLPQEDLEALVMPTLRQA-AEDKSWRVRYMVADKFTE-LQKAVGPEITKT 280
Query: 1179 LLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL 1238
L F +++ +R + ++ + + + LP +
Sbjct: 281 DLVPAF------QNLMKDCEAEVRAAASHKVKEFCENLS-----ADCRENVIMSQILPCI 329
Query: 1239 FDTLRDEGYSLTESEAAVF----------------LPCLVEKSGHNIEKVREKMRELTKQ 1282
+ + D + + A+V LP + + +VR +
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389
Query: 1283 IVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVAS 1338
+ + LP I+E R R+ ++ + L G E K + +
Sbjct: 390 VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF-DEKLNSLCMA 448
Query: 1339 LTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREM 1392
+ IR+AA + L + G++ + +M D + R
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDP-NYLHRMT 499
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-05
Identities = 92/596 (15%), Positives = 186/596 (31%), Gaps = 105/596 (17%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKIL-----EEANKRIQPAGTGELFGGLRGRLYDSNKN 910
L+ L + D ++RL SI+ ++ I E + P L +YD ++
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPF--------LTDTIYDEDEV 64
Query: 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA---WLAAV 967
L+ LG + +G + +L + + +R+ + L A +
Sbjct: 65 LLAL-AEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 968 HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA------- 1020
L+ + L DW + + + F + A A
Sbjct: 122 DLEAHFVPLVKRLAGG-----------DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 1021 --MTDKSSDVRKAAEACIVEILRAGGQETIE--------KNLKDIQGP---ALALILERI 1067
+D + VR+AA + + E + + ++ D Q I
Sbjct: 171 NLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230
Query: 1068 KLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
A + + A+ S ++ + + A I D
Sbjct: 231 ----AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK-TDLVPA 285
Query: 1128 SQALLNVKDSNKEDRERM---------VVRRFKFEDPRIEQI----QELENDMMKYFRED 1174
Q L+ KD E R + E+ + QI +EL +D ++ +
Sbjct: 286 FQNLM--KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA 343
Query: 1175 LHRRL--LSTDFKKQV---DGLEMLQKAL----PSIRKDIIEVLDILLRWF-VLQFCKSN 1224
L + LS K L + L P +R +II LD + + Q +S
Sbjct: 344 LASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403
Query: 1225 TTCLLK------------VLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272
+++ ++E++P L L E + + ++ +
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF------DEKLNSLCMAWLVDHVYAI 457
Query: 1273 REKMRELTKQIVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG 1328
RE K++V + +P +L N R+ + + L + G +I+
Sbjct: 458 REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT 517
Query: 1329 QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDR 1384
+ L V + + +R +L IL + ++ + + D+
Sbjct: 518 K-HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS--EVKPILEKLTQDQ 570
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-11
Identities = 41/220 (18%), Positives = 90/220 (40%), Gaps = 22/220 (10%)
Query: 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLR 357
W+ K+A++ + +A T+ + + + L L+ I + E +A G +A+
Sbjct: 46 WTVVKNAISIIMVIAKTR---EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102
Query: 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVP 417
++PVL + +++ L+ + KA + + +V D + + +K
Sbjct: 103 ELVKS----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNR 158
Query: 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477
+ LN++ E S K ++P + L+DG VR +A L +A
Sbjct: 159 EDKLTALNFIEAMGENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213
Query: 478 --MRPLERSIEKLDD----VRR---NKLSEMIAGSGGDVA 508
+ + + +E+L+D V + +S ++ G +
Sbjct: 214 KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 8e-05
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 16/187 (8%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 915
L++ L+ W V +I + I + +P + L L S +
Sbjct: 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQE 89
Query: 916 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY 975
+ M + K ++ + + + L+ +A + M
Sbjct: 90 IAKAFG---QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEE-IAKANPMLMASI 145
Query: 976 V---TTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAA 1032
V + L+ E + +++ G + F L + D VR +A
Sbjct: 146 VRDFMSMLSSKN--REDKLTALNFIEAM--GENSFKYVNPFLPRIINLLHDGDEIVRASA 201
Query: 1033 EACIVEI 1039
+V +
Sbjct: 202 VEALVHL 208
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 62.4 bits (150), Expect = 1e-09
Identities = 139/1073 (12%), Positives = 306/1073 (28%), Gaps = 96/1073 (8%)
Query: 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE 384
+V + + KL+ D N V A++ +G L ++ + ++ L + K + +
Sbjct: 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQLRD 104
Query: 385 SLTQTLQAMHKA------GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----TS 434
+ L+ + G +V + + + + + +++ I +
Sbjct: 105 ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164
Query: 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-------MRPLERSIEK 487
++ H + + L VR L + S G + L + K
Sbjct: 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK 224
Query: 488 LDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547
D + + + A ++ V + +R+
Sbjct: 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284
Query: 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607
+ K + + + ++ E + + + GS
Sbjct: 285 RCPKEVYPHVSTIINICLK--YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD- 341
Query: 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEV 666
WK R A L V + E + L + E+ V+ V
Sbjct: 342 --DDDMSWKVRRAAAKCLDAVVSTRHEMLP--EFYKTVSPALISRFKEREENVKADVFHA 397
Query: 667 INYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 726
++ + + D LT V I + L+K M
Sbjct: 398 Y------------LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN--IVKALHKQM 443
Query: 727 KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAAT--RNATIKLLG 784
K+ K+ K + V + + ++ L ++++ + + L
Sbjct: 444 KE-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502
Query: 785 ALHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDA- 561
Query: 844 GLPREDISGKFTPTLVKSLESPD--WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
+K L++ D +V+ +I + +I+ +
Sbjct: 562 ----TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD-LPNTLQIFL 616
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
RL + L +TL A S + + + + L N++ ++ TL+ LD
Sbjct: 617 ERLKNEITRLTTVKALTLIA-GSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021
+ L A + D L ++ H+ + A +
Sbjct: 676 ILIKNYS--------------DSLTAAMIDAVLDELPPLIS-----ESDMHVSQMAISFL 716
Query: 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1081
T + + IL L+ A+ + + + G + +
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776
Query: 1082 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1141
+ + S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTD 832
Query: 1142 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSI 1201
R++ E + E+ A ++
Sbjct: 833 SIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS------------PSEEVKSAASYAL 880
Query: 1202 RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1261
+ L L + + + L L L + + + L
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYL----LLHSLKEIISSASVVGLKPYVENIWALL 936
Query: 1262 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1321
++ E R + E ++ T LP + L S ++ R V V F I
Sbjct: 937 LKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAVKFTISD 995
Query: 1322 HGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
H I LK+ + + D +R+ AL T + I + +
Sbjct: 996 HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1048
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 49.7 bits (117), Expect = 1e-05
Identities = 59/523 (11%), Positives = 151/523 (28%), Gaps = 65/523 (12%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK---------TVADSN 65
P + +K+ +EA + L I + P K AD +
Sbjct: 523 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 582
Query: 66 APVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCL--TGRPKTVEKAQAVFMLWVEL 123
V+++A+ + + + G + R TV+ + +++
Sbjct: 583 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI 642
Query: 124 EAVDVFLDVME---KAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--KRILKMLPELFD 178
+ V + + ++ + + + + + + +L LP L
Sbjct: 643 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLIS 702
Query: 179 HQDQNVRASSKGLTLELCRWIGK------DPVKTILFEKMRDTMKKELEVELVNVSGTAR 232
D +V + L + + L +R + + + + A
Sbjct: 703 ESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQAL 762
Query: 233 PTRKIRAEQDKELGQELISEDVGPGPS---EESTADVPPEIDEYELVDPVDILTPLEKSG 289
+L + L + ++S + + P + + +
Sbjct: 763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ-- 820
Query: 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349
F + VK ++ ++ +A L+ I E+ + + + + V A A+
Sbjct: 821 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 880
Query: 350 GNLARG----------------------------------LRTHFSGSSRFLLPVLLEKL 375
G+++ G + +LL+
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 940
Query: 376 KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435
+ + + + L + ++ ++ +K + + RS + V F I
Sbjct: 941 ECAEEGTRNVVAECLGKL---TLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP 997
Query: 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
+ + + K+ + ++ L D VR A + A +
Sbjct: 998 QP-IDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS 1039
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 47.0 bits (110), Expect = 7e-05
Identities = 92/709 (12%), Positives = 228/709 (32%), Gaps = 79/709 (11%)
Query: 23 KNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKA 82
+WKVR A L A+ + + + + P + V+ A ++ LK
Sbjct: 345 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404
Query: 83 ADADAGRYAKEVCDAIAAKCLTG----------------RPKTVEKAQAVFMLWVELEAV 126
LT + K+V+ Q F + EL V
Sbjct: 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464
Query: 127 ---------DVFLDVMEKAIKNKVAKAVV--PAIDVMFQALSEFGAKIIPP--KRILKML 173
V + + ++ +K + + + A+ ++ L ++ P + ++ +
Sbjct: 465 LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV 524
Query: 174 PELFDHQDQNVRASSKGLTLELCRWIG----------KDPVKTILFEKM----RDTMKKE 219
+ + + +T +L + I +K + + + +E
Sbjct: 525 VACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQE 584
Query: 220 LEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279
++ ++ G D ++ E + + +T I L +
Sbjct: 585 VKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDL 644
Query: 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDV 337
+ ++ + + + ++ L L + V L LI++
Sbjct: 645 RPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISES 704
Query: 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK--KPTVAESLTQTLQAMHK 395
++ V+ AI + LA+ + S S +L L+ ++ + ++ QA+
Sbjct: 705 DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764
Query: 396 AG--CLNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452
G L +D++ + V + L + + C+ ++A + +
Sbjct: 765 TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQD 824
Query: 453 CLNDGTPE-VRDAAFSVLAAIAKSVGMRP---LERSIEKLDDVRRNKLSEMIAGSGGDVA 508
N + + +R A L + + + L+ I + ++ + + G ++
Sbjct: 825 VKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSIS 884
Query: 509 TGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDG 568
G +P V +S ++ + S K +S+A V+
Sbjct: 885 VGNLPEY-------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENI----- 932
Query: 569 SGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQL----KSAVWKERLEAIS 623
+ L + E E ++ E +L + P + +L S R ++
Sbjct: 933 -----WALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVT 987
Query: 624 SLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 671
+++ + + Q +D ++ + L + ++ V++ + N A
Sbjct: 988 AVKFTISDHPQPIDPLLKNC--IGDFLKTLEDPDLNVRRVALVTFNSAA 1034
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 1e-09
Identities = 88/726 (12%), Positives = 208/726 (28%), Gaps = 111/726 (15%)
Query: 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-GLRTHFSGSSRFLLPVLLEK 374
+ G + I D + + I +A G ++ LLP L
Sbjct: 81 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD----LLPKLCSL 136
Query: 375 LKEKKP-----------TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLT 423
L + + E + L + LN++ + K+ P +RS
Sbjct: 137 LDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM--IPKFLQFFKHSSPKIRSHA 194
Query: 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--MRP- 480
+ V I + ++A ++ ++ D PEVR L + + + P
Sbjct: 195 VACVNQFIISRTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 481 --------LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532
L+R+ ++ ++V + +E
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEFWLT--------------------------LAEQP 287
Query: 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS-- 590
+ L PV + + + D S+ +
Sbjct: 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIIL---------LKGDVEGGSGGDDTISDWNLR 338
Query: 591 ------LEEIESRLGSLIPADTVGQLK----SAVWKERLEAISSLRQQVEA-----VQNL 635
L+ + + + + LK W + I L E + L
Sbjct: 339 KCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 398
Query: 636 DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT-ATKFPKKCVVLCLLGISERVA 694
+ + L++ + S+K V+ ++ A ++ P + + + +R+
Sbjct: 399 PELIPHLIQCL------SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 452
Query: 695 D--IKTRAHAMKCLTTFSEAVGPGF------IFERLYKIMK--DHKNPKVLSEGILWMVS 744
D + + A T E I + L HKN +L + I +
Sbjct: 453 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512
Query: 745 AVEDFGVSHLKLKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803
+V ++ L+ + ++ L ++ + + V
Sbjct: 513 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 572
Query: 804 ALLSAL------DAEYEKNPFEGTVVPKKTVRASEST-SSVSSGGSDGLPREDISGKFTP 856
++ + P + K + + S ++ G + +
Sbjct: 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 632
Query: 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916
+ + ++ +VR S + + + + ++P + L L ++
Sbjct: 633 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNAT 691
Query: 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH--MRECTLTVLDAWLAAVHLDKMVP 974
+G ++ MG ++ VL +++ + + E T + L V ++ P
Sbjct: 692 WAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI-GRLGYVCPQEVAP 750
Query: 975 YVTTAL 980
+ +
Sbjct: 751 MLQQFI 756
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 8e-06
Identities = 56/436 (12%), Positives = 122/436 (27%), Gaps = 48/436 (11%)
Query: 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 636
L + ED S + ++ L +IP + K + K R A++ + Q + +
Sbjct: 152 LQKICEDSAEILDS-DVLDRPLNIMIPK-FLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209
Query: 637 QSV--EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK----KCVVLCLLGIS 690
+ L + ++ +V++ V + L V L
Sbjct: 210 MLHIDSFIENLFALA---GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ 266
Query: 691 ERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750
+ D A + T +E + + K + PK++ + M + D
Sbjct: 267 D--QDENVALEACEFWLTLAE--------QPICKDVLVRHLPKLIPVLVNGMKYSDID-- 314
Query: 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALD 810
+ LK D + R + L L ++ + + LL +
Sbjct: 315 IILLKGDVEGGSGGDDTISDWN--LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 372
Query: 811 AEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 870
+++ G G+ + P L++ L VR
Sbjct: 373 -------------WVVKESGILVLGAIAEGCMQGM--IPYLPELIPHLIQCLSDKKALVR 417
Query: 871 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930
+ +++ + L L R+ DSNK + A + +
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL 477
Query: 931 EKSSKGVLSDILKCLGDNKKHMRECTLTVL--------DAWLAAVHLDKMVPYVTTALTD 982
+L ++ + + ++ ++P +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 983 AKLGAEGRKDLFDWLS 998
K + L + LS
Sbjct: 538 LKDEDKDLFPLLECLS 553
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 8e-08
Identities = 48/423 (11%), Positives = 132/423 (31%), Gaps = 42/423 (9%)
Query: 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNL-------DQSVEILV 643
++ R + + + Q+K+ + + + + + E++
Sbjct: 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMK 137
Query: 644 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF-------PKKCVVLCLLGISERVADI 696
+V +E+ V++ + + Y+ +A ++ + G
Sbjct: 138 IMVDNTG--AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK 195
Query: 697 KTRAHAMKCLTTFSEAVGPGFIFERLYKIM-------KDHKNPKVLSEGILWMVSAVEDF 749
R A+ L + E + ++ +V + + + +
Sbjct: 196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255
Query: 750 GVSHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807
+ +K ++ + ++S + T++ + + DI LA + L
Sbjct: 256 -YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE-IDIAYELAQFPQSPLQ 313
Query: 808 ALDAEYEKNPFEGTVVPKKTVRASE----STSSVSSGGSDGL------PREDISGKFTPT 857
+ + + R +E +VS L I
Sbjct: 314 SYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEF 373
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917
+ +++ + +W+ R ++ A I++ +K + + + + D + + T
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAW 433
Query: 918 TLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRE--CTLTVLDAWLAAVHLDKMV 973
+G +A ++ +++ GV+ L L D+ K T+ L LA +
Sbjct: 434 CIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIY 493
Query: 974 PYV 976
+
Sbjct: 494 NFY 496
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 6e-05
Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 21/206 (10%)
Query: 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353
+ R + +E+ + I L K I D A A
Sbjct: 23 LSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQ 82
Query: 354 RGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413
L L+P + K + ++TL ++ +N ++K
Sbjct: 83 SNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISI--VNAVNP--------VAIK 132
Query: 414 NKVP-LVRSL--TLNWVTFC--------IETSSKAAVLKVHKDYVPICMECLNDGTPEVR 462
+P L ++ T W + ++K V + +P+ E + D EV+
Sbjct: 133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVK 192
Query: 463 DAAFSVLAAIAKSVGMRPLERSIEKL 488
AA + + ++V + +ER I L
Sbjct: 193 AAATAAMTKATETVDNKDIERFIPSL 218
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 8e-04
Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 24/270 (8%)
Query: 683 VLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 742
++ ++ + + D + R A++ L I Y+ M+ + P + I
Sbjct: 218 IMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPAL--FAITIE 266
Query: 743 VSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802
+ V+ ++ + C + + A+ + KF +L +
Sbjct: 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326
Query: 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 862
L+ D + + + +A+ + + +DI P + + +
Sbjct: 327 TQTLTKQDENDDDDDWN-------PCKAAGVCLMLLAT----CCEDDIVPHVLPFIKEHI 375
Query: 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV 922
++PDW+ R ++ A ILE + L + D + + T+G +
Sbjct: 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
Query: 923 ASAMGPAVEKSS--KGVLSDILKCLGDNKK 950
+ A +L +++ L +
Sbjct: 436 CELLPEAAINDVYLAPLLQCLIEGLSAEPR 465
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2015 | |||
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 100.0 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 100.0 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 100.0 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.97 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.97 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.96 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.95 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.94 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.93 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.93 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.93 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.92 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.92 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.91 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.91 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 99.89 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.88 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 99.88 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.46 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.42 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.29 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.24 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.17 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.16 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.14 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.12 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.11 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.07 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.07 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.06 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.05 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.04 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.99 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.98 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.97 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.96 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.89 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.87 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.8 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.75 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.71 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.69 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 98.67 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 98.64 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.63 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.58 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.55 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.53 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.52 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.51 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.51 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.46 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.45 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.44 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.41 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.41 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.41 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.4 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.4 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 98.23 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.1 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.1 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.02 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.01 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.98 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.87 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.85 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 97.85 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 97.82 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 97.81 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.52 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.47 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.46 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.37 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.96 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 96.91 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 96.91 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 96.85 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.82 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 96.68 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 96.64 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 96.51 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 96.46 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.4 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 96.33 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 96.08 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 95.95 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 95.88 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 95.87 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.78 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 95.68 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 95.52 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 95.49 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 95.05 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.56 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 94.54 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 94.51 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 94.43 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 94.2 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 94.2 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 94.14 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 94.01 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 93.89 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 93.66 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 93.6 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 93.5 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 93.47 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 93.28 | |
| 1elk_A | 157 | Target of MYB1; superhelix of helices, endocytosis | 91.78 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 91.67 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 90.41 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 90.41 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 89.84 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 89.77 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 89.24 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 89.17 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 88.74 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 88.12 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 86.74 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 86.65 | |
| 1dvp_A | 220 | HRS, hepatocyte growth factor-regulated tyrosine k | 86.03 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 85.61 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 84.24 | |
| 3rru_A | 152 | TOM1L1 protein; structural genomics, PSI-biology, | 84.23 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 80.8 |
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-55 Score=511.75 Aligned_cols=256 Identities=28% Similarity=0.572 Sum_probs=247.0
Q ss_pred hhcccCCCChHHHhh----hhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCcChhhH
Q 000156 1130 ALLNVKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDI 1205 (2015)
Q Consensus 1130 ~~~~~~~~~k~~R~~----~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~ 1205 (2015)
|++. .+++|++|++ +++++|+|++||+|++++|++||.++++++++.+|||+||++|++|+++|++.++++++++
T Consensus 3 ~~l~-~~~~K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~ 81 (266)
T 2of3_A 3 LLLS-DNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSL 81 (266)
T ss_dssp CSBC-CSSHHHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred Ccee-cCccHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHH
Confidence 4443 3788999984 5578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhh
Q 000156 1206 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVN 1285 (2015)
Q Consensus 1206 i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~ 1285 (2015)
++++|++|||+++||+|+|++|++++||+|..+|..|.+.+|+|+++|+.+|||+|++|+||+||.||+.++.+++.++.
T Consensus 82 ~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~ 161 (266)
T 2of3_A 82 LSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD 161 (266)
T ss_dssp HHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchH---HHHHHhhccCChHHHHHHHHHHHHHHHHh
Q 000156 1286 FYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKIL 1362 (2015)
Q Consensus 1286 vy~~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l---~~ia~~i~drd~~VR~AAl~~l~~~y~~~ 1362 (2015)
+||++++|+|+++|++|||+|+|+||+++|+++|++||+. +.|++ +.|+++++|+|++||+||+||++++|.++
T Consensus 162 v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 162 VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999996 67888 99999999999999999999999999999
Q ss_pred ChHHHHHhhcCCHHHHHhHHHHHHhhh
Q 000156 1363 GEDIWRYVGKLTDAQKSMLDDRFKWKV 1389 (2015)
Q Consensus 1363 G~~v~~~vg~Ls~~~~s~l~er~kr~~ 1389 (2015)
||.||+++|+|++++++||+|||||++
T Consensus 239 Gd~v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 239 GDQMWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp TTHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhcCCHHHHHHHHHHHhhcc
Confidence 999999999999999999999999974
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=329.88 Aligned_cols=231 Identities=24% Similarity=0.435 Sum_probs=219.6
Q ss_pred CCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHH-Hh-cCCCCC--CCChHHHHHHHHHHh-cccCHHHHHH
Q 000156 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK-LA-STKRIA--PGDFTEVCRTLKKLI-TDVNIAVAVE 344 (2015)
Q Consensus 270 iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~-l~-~~~ki~--~~~y~~l~~~L~k~l-~D~N~~V~~~ 344 (2015)
.|+||++|||||++|+| ++|++.+.++||++|++|++.|.. ++ +++++. .++|.++++.|++.+ +|+|+.|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~-~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLP-KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CchHhhcChhhhhhhCC-hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHH
Confidence 47899999999999999 699999999999999999999999 87 678888 689999999999999 6999999999
Q ss_pred HHHHHHHHHHHhh-hcch-hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC------CChHhHHHHHHHHhhcCC
Q 000156 345 AIQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC------LNLVDVVEDVKTSVKNKV 416 (2015)
Q Consensus 345 A~~~l~~La~~L~-~~f~-~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~------~~l~~il~~l~~~L~~Kn 416 (2015)
|++||+.|+++++ +.|+ +|+..++|.++++++|+|+.|++++..|+++++.+ + .+++.+++.|+.+|+|||
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~ 159 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKT 159 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999 99999999999999999999999999999999998 4 238999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCh--hHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHH
Q 000156 417 PLVRSLTLNWVTFCIETSSK--AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (2015)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~--~~l~~~l-~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~ 493 (2015)
|++|.+++.||.+++..++. ..+.+++ +.++|.+.++++|++++||++|.+|++++++++|++.+.+|++.||+.++
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKR 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHH
Confidence 99999999999999998875 5677899 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000156 494 NKLSEMIAG 502 (2015)
Q Consensus 494 kkI~e~~~~ 502 (2015)
++|++++++
T Consensus 240 ~ki~~~~~~ 248 (249)
T 2qk1_A 240 KKIEETVKT 248 (249)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999875
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=340.10 Aligned_cols=233 Identities=25% Similarity=0.390 Sum_probs=183.4
Q ss_pred CChHHhhhhhhcCCChhhhhcCCChHHHHHHHHHHHHHhhccCCC--Cc---hHHHhhhhhhHhhhcCCcHHHHHHHHHH
Q 000156 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDP--KD---NRIRELGPLFKKTVADSNAPVQDKALDA 75 (2015)
Q Consensus 1 m~~~~~~~~~~~~lpl~erl~~k~WK~R~~ayeeL~~~~~~~~d~--~~---~~~~~~~~~~~k~v~DsN~~vqe~~lea 75 (2015)
|++|++ .||++|||+|||.||+||.|++||++|.+.|+..... .+ ..|..+.+++++++.|+|+.||++|+++
T Consensus 1 m~~~e~--~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~ 78 (278)
T 4ffb_C 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVA 78 (278)
T ss_dssp ------------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcch--hhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 777553 4999999999999999999999999999999865332 12 2366778899999999999999999999
Q ss_pred HHHHHHHhchhh------hhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh-hhhHHHHHHHHhhcCChhhHHH
Q 000156 76 LIAYLKAADADA------GRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA-VDVFLDVMEKAIKNKVAKAVVP 147 (2015)
Q Consensus 76 l~~~l~~~~~~~------~~~~~~v~~~LieK~l~-~k~~~k~~a~~~ll~~~E~~~-~~~v~~~L~~~~~~KnpKv~~~ 147 (2015)
+..|++..+... ..++..+++.|++||++ +|+++|+.|.++++.++|... .+.+++.|.++++|||||++.+
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~ 158 (278)
T 4ffb_C 79 LNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAA 158 (278)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHH
T ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHH
Confidence 999998765432 23467899999999988 799999999999999999865 4778899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcChhH----HHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCch--hhHHHhhhChHHHHHHHH
Q 000156 148 AIDVMFQALSEFGAKIIPPKR----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP--VKTILFEKMRDTMKKELE 221 (2015)
Q Consensus 148 ~l~~L~~~l~~fG~~~i~~k~----il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~--l~~~l~~~Lk~~q~keLe 221 (2015)
|+.||.+++.+||.+++++++ +++.++++|+|+|++||++|+.+++++|+|+|+.. +...++++|||+|+++|+
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le 238 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHH
Confidence 999999999999999998765 66788999999999999999999999999999742 223445899999999999
Q ss_pred HHHHhcCCCCCCCc
Q 000156 222 VELVNVSGTARPTR 235 (2015)
Q Consensus 222 ~~f~k~~~~~~P~R 235 (2015)
++|+++++.++|++
T Consensus 239 ~~f~k~~~~~~~~~ 252 (278)
T 4ffb_C 239 KLFAKVGDEPSSSK 252 (278)
T ss_dssp HHHSCCCC------
T ss_pred HHHHhcCCCCCCCC
Confidence 99999987655443
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-25 Score=317.52 Aligned_cols=1022 Identities=14% Similarity=0.134 Sum_probs=658.8
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCCCCc-hHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHH
Q 000156 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKD-NRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (2015)
Q Consensus 15 pl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~-~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~~~~ 93 (2015)
.|.+++.|.+...|.+|.++|.+.++...-..+ .....+...+.+++.|.|..++..|+.++..+++..+. .+...
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~ 86 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 86 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 367889999999999999999998864311112 23445566677888999999999999999998876644 45667
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh------------hhhHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhC
Q 000156 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA------------VDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFG 160 (2015)
Q Consensus 94 v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~------------~~~v~~~L~~~~~-~KnpKv~~~~l~~L~~~l~~fG 160 (2015)
+++.|++......+.+|..|..++-.+++.-. ...++..|..++. +.++.++.+++.+|.+++..+|
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 88888876434678889998888887775522 3466777777887 6899999999999999999999
Q ss_pred CCCcC-hhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchh
Q 000156 161 AKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRA 239 (2015)
Q Consensus 161 ~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs 239 (2015)
....+ ...+++.+.+.|.|.+..||..|...+..+....++..+ ..+-+..+..|.. -.. ... |.
T Consensus 167 ~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~-----~~~l~~l~~~L~~----~~~--~~~---r~ 232 (1230)
T 1u6g_C 167 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF-----VDLIEHLLSELSK----NDS--MST---TR 232 (1230)
T ss_dssp SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----C-----TTHHHHHHHHHHH----TCS--SCS---CT
T ss_pred hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHhcc----CCc--hhH---HH
Confidence 86544 467999999999999999999999999999988876422 2221222222211 111 111 11
Q ss_pred hhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcC-CCC
Q 000156 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRI 318 (2015)
Q Consensus 240 ~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki 318 (2015)
..-.-.. . -....+ ..+.+| .+ + +- +.+...+.+.++..|..++..+..++.. +.-
T Consensus 233 ~a~~~l~-~-l~~~~~------------~~~~~~--l~--~----l~-~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 233 TYIQCIA-A-ISRQAG------------HRIGEY--LE--K----II-PLVVKFCNVDDDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp THHHHHH-H-HHHHSS------------GGGTTS--CT--T----HH-HHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHH-H-HHHHhH------------HHHHHH--HH--H----HH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH
Confidence 1110000 0 000000 012222 11 1 21 3456666778888999999988887742 211
Q ss_pred CCCChHHHHHHHHHHhc-------------------------------------ccCHHHHHHHHHHHHHHHHHhhhcch
Q 000156 319 APGDFTEVCRTLKKLIT-------------------------------------DVNIAVAVEAIQAIGNLARGLRTHFS 361 (2015)
Q Consensus 319 ~~~~y~~l~~~L~k~l~-------------------------------------D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (2015)
....+..+++.+.+.+. |..-.|+..|+.+++.++...+..|.
T Consensus 290 ~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~ 369 (1230)
T 1u6g_C 290 VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369 (1230)
T ss_dssp CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH
Confidence 11123455555544442 12235788999999999997776799
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC-----------------------ChHhHHHHHHHHhhcCChH
Q 000156 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL-----------------------NLVDVVEDVKTSVKNKVPL 418 (2015)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~-----------------------~l~~il~~l~~~L~~Knp~ 418 (2015)
+|...++|.++..++|....||.++..++..++..... .++.+++.+...+++.+|.
T Consensus 370 ~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~ 449 (1230)
T 1u6g_C 370 EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVK 449 (1230)
T ss_dssp HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHH
Confidence 99999999999999999999999999999888864100 1234455555568999999
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHH
Q 000156 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (2015)
Q Consensus 419 vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~--~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI 496 (2015)
+|..++..|..++...+ ..+..+++.++|.+...|.|.++ +||..+..+++.+....|.+.+.++++.+
T Consensus 450 vr~~~~~~L~~l~~~~~-~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~l-------- 520 (1230)
T 1u6g_C 450 TRQCCFNMLTELVNVLP-GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL-------- 520 (1230)
T ss_dssp HHHHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTT--------
T ss_pred HHHHHHHHHHHHHHHch-hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHH--------
Confidence 99999999999888754 33556789999999999999985 89999998888877666654344333221
Q ss_pred HHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCC
Q 000156 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK 576 (2015)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~ 576 (2015)
T Consensus 521 -------------------------------------------------------------------------------- 520 (1230)
T 1u6g_C 521 -------------------------------------------------------------------------------- 520 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccc--------cchHHHHHHHHHhc
Q 000156 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--------LDQSVEILVRLVCM 648 (2015)
Q Consensus 577 ~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~--------~~~~~~~Lv~~L~~ 648 (2015)
-+.++..+.+.+|+.|.+++..+..+++..+. ..++.+.++..+..
T Consensus 521 --------------------------lp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 574 (1230)
T 1u6g_C 521 --------------------------VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK 574 (1230)
T ss_dssp --------------------------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH
Confidence 13344556777888888888888888766332 22344444443321
Q ss_pred CCCC--cccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhh---ChhH----HH
Q 000156 649 LPGW--SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV---GPGF----IF 719 (2015)
Q Consensus 649 ~pg~--~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~---~~~~----Vl 719 (2015)
.+ .|.+..|++.++.++..++...+......+..+++.|.+.+.+...|..+..++..++... ..+. ++
T Consensus 575 --~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~ 652 (1230)
T 1u6g_C 575 --RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGV 652 (1230)
T ss_dssp --HHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHH
T ss_pred --HHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHH
Confidence 13 5778889999999999999987654445678888988888887667777777887776532 2233 34
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHH---HhcCCCCCchhHHHHHHHHHHHHHHHhChhHHh
Q 000156 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC---KDTGLQSSAAATRNATIKLLGALHKFVGPDIKG 796 (2015)
Q Consensus 720 ~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l---~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~ 796 (2015)
+.+...+ ...++.+|..++.++..++..++. .++...+.+.+ ..+ +.+.|..++..+..++..|+...++.+..
T Consensus 653 ~~L~~~l-~~~~~~~r~~a~~al~~l~~~~~~-~~~~~~v~~~l~~ll~l-l~~~D~~~~~~~~~~L~~l~~~~~~~~~~ 729 (1230)
T 1u6g_C 653 PILASFL-RKNQRALKLGTLSALDILIKNYSD-SLTAAMIDAVLDELPPL-ISESDMHVSQMAISFLTTLAKVYPSSLSK 729 (1230)
T ss_dssp HHHHHHT-TSCCHHHHHHHHHHHHHHHHHCCT-TCCHHHHHHHHTTCGGG-SCTTCHHHHHHHHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHhcccc-cCCHHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHHHHhCchhHHH
Confidence 4444443 567899999999999999998874 34444444444 344 67889999999999999999887766655
Q ss_pred hhhhccHHHHHHHHH-------------HHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcC
Q 000156 797 FLADVKPALLSALDA-------------EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 863 (2015)
Q Consensus 797 ~L~~lkp~ll~~Le~-------------ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~ 863 (2015)
++..+-|.++..+.. -|..+...++ +. .....+.+.++..+.
T Consensus 730 ~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~------------------------~~-~~~~~ll~~l~~~~~ 784 (1230)
T 1u6g_C 730 ISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT------------------------NN-LGYMDLLRMLTGPVY 784 (1230)
T ss_dssp TTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCC------------------------TT-CSHHHHHHHHSTTTT
T ss_pred hHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCC------------------------CC-CCHHHHHHHHhcccc
Confidence 555555544443321 1111111000 00 001111122222211
Q ss_pred ---C--CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc--chHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 864 ---S--PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 864 ---d--~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~D--sN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
+ ..|..|..+.+.+..++...+. . .++++..|...+.+ .+..++..++.+++.++...+ +.. ...
T Consensus 785 ~~~~~~~~~~~~~~~a~~i~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~--~~~-~~~ 856 (1230)
T 1u6g_C 785 SQSTALTHKQSYYSIAKCVAALTRACPK----E-GPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID--LSG-QLE 856 (1230)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHSCC----C-SHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSC--CCS-CTH
T ss_pred CCCCccccchhhHHHHHHHHHHHHhcch----h-hHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCC--Ccc-ccc
Confidence 1 3677788888888887764321 1 13444444444543 345566777788888765432 222 245
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC---CChhhh
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHL 1013 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~---~~~~~l 1013 (2015)
+...++..|.|....||.+|..||+.++. -+++.++|.+...+.+. +..|...+.-|.+.+...+.. +....+
T Consensus 857 l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~-~~~~~~lp~ll~~l~~~---~~~~~~~l~al~e~i~~~~~~~~~~~~~~i 932 (1230)
T 1u6g_C 857 LKSVILEAFSSPSEEVKSAASYALGSISV-GNLPEYLPFVLQEITSQ---PKRQYLLLHSLKEIISSASVVGLKPYVENI 932 (1230)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHSSCSTTTHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHhHHHhc-cCHHHHHHHHHHHHhcc---chhhHHHHHHHHHHHhcCChhhHHhhHHHH
Confidence 78999999999999999999999999874 35678899999999754 567888888888888754321 122445
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhc-cCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCC
Q 000156 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK-DIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSAS 1092 (2015)
Q Consensus 1014 l~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~-~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~ 1092 (2015)
...++..+.|.+..+|..+.+|++.+....+.. +.+.+. .|+
T Consensus 933 ~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~-l~p~l~~~l~------------------------------------ 975 (1230)
T 1u6g_C 933 WALLLKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLI------------------------------------ 975 (1230)
T ss_dssp HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGG-THHHHTTTSS------------------------------------
T ss_pred HHHHHHHhcCcchhhHHHHHHHHhhhhccChHH-HHHHHHHHhc------------------------------------
Confidence 555777888888999999999999988775432 222211 000
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhh
Q 000156 1093 NGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR 1172 (2015)
Q Consensus 1093 ~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~ 1172 (2015)
T Consensus 976 -------------------------------------------------------------------------------- 975 (1230)
T 1u6g_C 976 -------------------------------------------------------------------------------- 975 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcccCHHHHHHHHHHHHHhcCcChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHH
Q 000156 1173 EDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252 (2015)
Q Consensus 1173 ~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~ 1252 (2015)
+.+...|..++..+..++...+..+...++-++.-+...+.|++..|-..++..|..+.....+ +-..
T Consensus 976 --------~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~ 1043 (1230)
T 1u6g_C 976 --------SGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS----LIRD 1043 (1230)
T ss_dssp --------SSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGG----GTGG
T ss_pred --------CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChH----hHHH
Confidence 0000001111111111122111111122322323333346888888888888888876554322 2223
Q ss_pred HHHhhhhHHHHhhcCChH------------------HHHHHHHHHHHHHhhccC----ccccHHHHHhhhcCCChhhHHH
Q 000156 1253 EAAVFLPCLVEKSGHNIE------------------KVREKMRELTKQIVNFYS----ATKTLPYILEGLRSKNNRTRIE 1310 (2015)
Q Consensus 1253 Ea~~~lP~L~~K~Gd~k~------------------~vr~~v~~il~~i~~vy~----~skvf~~l~~gl~sKN~r~R~e 1310 (2015)
....++|.|+..+-...+ .+|+..-+.+-.+...+. ...+|+.++.|++-- -..|.-
T Consensus 1044 ~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d~-~di~~~ 1122 (1230)
T 1u6g_C 1044 LLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDH-YDIKML 1122 (1230)
T ss_dssp GHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSSC-HHHHHH
T ss_pred HHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccCch-HHHHHH
Confidence 467799999877644333 577776666666655542 346777778888663 678889
Q ss_pred HHHHHHHHHHhhCCCcccc-cchHHHHHHhhc------------cCChHHHHHHHHHHHHHHHHhC
Q 000156 1311 CVDLVGFLIDHHGAEISGQ-LKSLQIVASLTA------------ERDGEIRKAALNTLATGYKILG 1363 (2015)
Q Consensus 1311 cl~~l~~li~~~g~~~~~~-~k~l~~ia~~i~------------drd~~VR~AAl~~l~~~y~~~G 1363 (2015)
|...|..+++.....+... .+.+..+++.++ +|..+...+||.|+..+..+.|
T Consensus 1123 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~~~ 1188 (1230)
T 1u6g_C 1123 TFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPE 1188 (1230)
T ss_dssp HHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999988876655322 222333333222 3344555666666665544443
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-25 Score=318.02 Aligned_cols=968 Identities=15% Similarity=0.130 Sum_probs=599.4
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-------hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcCh
Q 000156 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-------AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP 166 (2015)
Q Consensus 94 v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~-------~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~ 166 (2015)
-++.|++|..+..+.+|..|.+-+..++... ....++..|+.++.+++|+++.+++.+|..+....+.. .+
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~ 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH
Confidence 4677888866678899999977776665332 13477888899999999999999999999887644431 24
Q ss_pred hHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhh
Q 000156 167 KRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELG 246 (2015)
Q Consensus 167 k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~ 246 (2015)
..+++.+...+.+.+..||..|...+..+...+|+... ..........
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~----~~~~~~~~~~---------------------------- 132 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS----GSALAANVCK---------------------------- 132 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---------CCTHHHHHH----------------------------
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc----ccchHHHHHH----------------------------
Confidence 56888999999999999999999999988888875200 0000000000
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhc-cCChHHHHHHHHHHHHHhc-CCCCCCCChH
Q 000156 247 QELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK-ATKWSERKDAVAELTKLAS-TKRIAPGDFT 324 (2015)
Q Consensus 247 ~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~-s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~ 324 (2015)
++ + +.+.+.+. +.+|..|..|++.|..++. .++.....+.
T Consensus 133 ---------------------------------~l---l--p~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~ 174 (1230)
T 1u6g_C 133 ---------------------------------KI---T--GRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP 174 (1230)
T ss_dssp ---------------------------------HH---H--HHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHH
T ss_pred ---------------------------------HH---H--HHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 11 1 23444555 4789999999999998874 3333334568
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHh-c---CC
Q 000156 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKA-G---CL 399 (2015)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~al~~~-~---~~ 399 (2015)
.++..|...+.|.+..|+..|+.+|+.++..++..| ...+++.++..+.+.. ..+|..+..++..++.. + ..
T Consensus 175 ~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 251 (1230)
T 1u6g_C 175 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 251 (1230)
T ss_dssp HHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH
Confidence 899999999999999999999999999998887665 4456777777775543 35677778888888875 1 13
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHhCc
Q 000156 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSV-LAAIAKSVGM 478 (2015)
Q Consensus 400 ~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~a-l~~l~~~~Ge 478 (2015)
.+..+++.+...+++.++.+|..++.++..+...++.. +.++++.++|.+.+.+.+ ++++....... ...+....++
T Consensus 252 ~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~l~~li~~ll~~l~~-d~~~~~~~d~~~~~~~~~~~~~ 329 (1230)
T 1u6g_C 252 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VYPHVSTIINICLKYLTY-DPNYNYDDEDEDENAMDADGGD 329 (1230)
T ss_dssp SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHHHHHHHHHHHTTCCCC-C---------------------
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-HHHhHHHHHHHHHHHhCC-CCCCCCcccccccccccccccc
Confidence 45789999999999999999999999999888766543 456788999999988863 22221000000 0000000011
Q ss_pred hHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccccccc---CCCCCCCCCCCCC
Q 000156 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASML---SGKRPVSAAPASK 555 (2015)
Q Consensus 479 ~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~---~~~~P~~~~~~~~ 555 (2015)
..... .++ ++.... . .. ..++..+.... ....
T Consensus 330 ~~~~~----~~~-------~~~~~~--d---~~--------------------~~vR~~A~~~l~~l~~~~--------- 364 (1230)
T 1u6g_C 330 DDDQG----SDD-------EYSDDD--D---MS--------------------WKVRRAAAKCLDAVVSTR--------- 364 (1230)
T ss_dssp -------------------------------CT--------------------THHHHHHHHHHHHHHTTC---------
T ss_pred cchhh----ccc-------cccccc--c---cC--------------------HHHHHHHHHHHHHHHHhc---------
Confidence 00000 000 000000 0 00 00000000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhcccc
Q 000156 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL 635 (2015)
Q Consensus 556 k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~ 635 (2015)
+ +.+...+..+ .+.++..+.+.++..|.++++.+..++......
T Consensus 365 ------------------------------~-----~~~~~~~~~l-~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 408 (1230)
T 1u6g_C 365 ------------------------------H-----EMLPEFYKTV-SPALISRFKEREENVKADVFHAYLSLLKQTRPV 408 (1230)
T ss_dssp ------------------------------C-----TTHHHHHTTT-HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC
T ss_pred ------------------------------h-----hHHHHHHHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccc
Confidence 0 0011112122 244667778888888989888888877653210
Q ss_pred --------------------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc
Q 000156 636 --------------------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD 695 (2015)
Q Consensus 636 --------------------~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD 695 (2015)
......++..+.. .++|.+..++..++.++..++..++.....++..+++.+++.+.|
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~--~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d 486 (1230)
T 1u6g_C 409 QSWLCDPDAMEQGETPLTMLQSQVPNIVKALHK--QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLND 486 (1230)
T ss_dssp ------------CCCHHHHHHHHTTHHHHHHHH--HTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTC
T ss_pred cccccCccccccccchHHHHHHHhhHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcC
Confidence 0112233333322 367888899999999999999987765556788999999999988
Q ss_pred h----hhhHHHHHHHHHHHhhhChhH-------HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC------CCCC--h
Q 000156 696 I----KTRAHAMKCLTTFSEAVGPGF-------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV------SHLK--L 756 (2015)
Q Consensus 696 ~----K~r~~a~~~L~~l~e~~~~~~-------Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~------~~l~--~ 756 (2015)
. .++..+...+..+++..+++. +++.++..+ .+++++++.+++..+..+++.+|. ..+. +
T Consensus 487 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l-~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 565 (1230)
T 1u6g_C 487 KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV-GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI 565 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence 5 467777777777777666552 344455543 678999999999999999998886 1221 3
Q ss_pred hhHHHHHHhcCC--CCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCcccc
Q 000156 757 KDLIDFCKDTGL--QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (2015)
Q Consensus 757 k~li~~l~~~gL--~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~ 834 (2015)
..+++.+... + .+.++.||.+|+.+++.|....|+.+..++.. ++..|...+
T Consensus 566 ~~ll~~ll~~-l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~----~l~~L~~~l--------------------- 619 (1230)
T 1u6g_C 566 KDLFTCTIKR-LKAADIDQEVKERAISCMGQIICNLGDNLGSDLPN----TLQIFLERL--------------------- 619 (1230)
T ss_dssp HHHHHHHHHH-HSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHH----HHHHHHHHT---------------------
T ss_pred HHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHH----HHHHHHHHh---------------------
Confidence 4567766655 6 77889999999999999999999876544433 222222211
Q ss_pred CCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhccccchHHHHH
Q 000156 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVM 913 (2015)
Q Consensus 835 ~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~-~~~~eL~~~L~~rL~DsN~~V~~ 913 (2015)
.+ ...|..++..+..++... ..+.. ..+.+++..|...+.|.+..++.
T Consensus 620 ----------------------------~~--e~~r~~~~~al~~i~~~~-~~~~~~~~~~~i~~~L~~~l~~~~~~~r~ 668 (1230)
T 1u6g_C 620 ----------------------------KN--EITRLTTVKALTLIAGSP-LKIDLRPVLGEGVPILASFLRKNQRALKL 668 (1230)
T ss_dssp ----------------------------TS--SSHHHHHHHHHHHHTTCS-SCCCCHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred ----------------------------cc--chhHHHHHHHHHHHHhCc-cccchHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 10 014666777777665311 11111 11478888999999999999999
Q ss_pred HHHHHHHHHHHHhChhhH-HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCC
Q 000156 914 ATLITLGAVASAMGPAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLG 986 (2015)
Q Consensus 914 ~Al~~l~~La~alg~~f~-~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~ 986 (2015)
.++.+++.++...+..+. .++..++..++..+.+....++..+..+|..+++..+ .+.+++.+...+.+....
T Consensus 669 ~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 748 (1230)
T 1u6g_C 669 GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQ 748 (1230)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccc
Confidence 999999999999987653 3444444444555678888899999999999987654 356778888888754322
Q ss_pred hhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCC-----CChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHH
Q 000156 987 AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTD-----KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (2015)
Q Consensus 987 p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D-----~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~ 1061 (2015)
......++..+............+..++..+...+.. .+..+|..+.+|++.+....|...- ..+..+-
T Consensus 749 ~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~----- 822 (1230)
T 1u6g_C 749 GGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFI----- 822 (1230)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTT-----
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH-HHHHHHH-----
Confidence 2233344444443332211122344555555443322 2456788899999998887776421 1111110
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhhhhhcccCCCChHH
Q 000156 1062 LILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1141 (2015)
Q Consensus 1062 ~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 1141 (2015)
...+. + .. ......-.+..+ ++-.
T Consensus 823 ------~~~~~------------------------------------~--~~---------~~~~~~~~l~~l---~~~g 846 (1230)
T 1u6g_C 823 ------QDVKN------------------------------------S--RS---------TDSIRLLALLSL---GEVG 846 (1230)
T ss_dssp ------TTTTT------------------------------------T--TC---------CHHHHHHHHHHH---HHHH
T ss_pred ------HHhCC------------------------------------C--Cc---------cHHHHHHHHHHH---HHhc
Confidence 00000 0 00 000000000000 0000
Q ss_pred HhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCcChhhHHHHHHHHHHHHHHhhc
Q 000156 1142 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFC 1221 (2015)
Q Consensus 1142 R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~ 1221 (2015)
+ ...|.. -++ +. +.++..+.+.+-.-|.+|...|-.... .+++.++.++...+.
T Consensus 847 ~----~~~~~~---~~~----l~--------~~~~~~l~~~~~~Vr~aAa~aLg~l~~-------~~~~~~lp~ll~~l~ 900 (1230)
T 1u6g_C 847 H----HIDLSG---QLE----LK--------SVILEAFSSPSEEVKSAASYALGSISV-------GNLPEYLPFVLQEIT 900 (1230)
T ss_dssp H----HSCCCS---CTH----HH--------HHHHHGGGCSCHHHHHHHHHHHHHHHH-------HTHHHHHHHHHHHHH
T ss_pred c----cCCCcc---ccc----HH--------HHHHHHhCCCCHHHHHHHHHHhHHHhc-------cCHHHHHHHHHHHHh
Confidence 0 001111 111 11 234445555666667777666665542 234444444444443
Q ss_pred CcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccccHHHHHhhhc
Q 000156 1222 KSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLR 1301 (2015)
Q Consensus 1222 dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~vy~~skvf~~l~~gl~ 1301 (2015)
+. +..-...|..|.+++... ..-.+ ...+..++|.|+..+++.-+.+|..+-+++..+..+.| ..++|.|.+.++
T Consensus 901 ~~-~~~~~~~l~al~e~i~~~--~~~~~-~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~-~~l~p~l~~~l~ 975 (1230)
T 1u6g_C 901 SQ-PKRQYLLLHSLKEIISSA--SVVGL-KPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETLLPRLKGYLI 975 (1230)
T ss_dssp SC-GGGHHHHHHHHHHHHHSS--CSTTT-HHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGTHHHHTTTSS
T ss_pred cc-chhhHHHHHHHHHHHhcC--ChhhH-HhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh-HHHHHHHHHHhc
Confidence 32 333334556666665432 12233 34478899999999998888899999999999988865 679999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhhCCCcccccchH-HHHHHhhccCChHHHHHHHHHHHHHHHHhChHHHHHhhc
Q 000156 1302 SKNNRTRIECVDLVGFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (2015)
Q Consensus 1302 sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l-~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~vg~ 1372 (2015)
+.|+.+|.-|+..+.+++...+.......+.+ +.+-.+++|.|..||.+|+.+|..+....|+.+..+++.
T Consensus 976 ~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~ 1047 (1230)
T 1u6g_C 976 SGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1047 (1230)
T ss_dssp SSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHH
T ss_pred CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHH
Confidence 99999998888877777654443221112233 555568899999999999999999887776665555443
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=289.35 Aligned_cols=230 Identities=29% Similarity=0.469 Sum_probs=217.4
Q ss_pred CCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHH
Q 000156 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQA 348 (2015)
Q Consensus 271 D~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~ 348 (2015)
||||+.+++||+++++ ++|++.+.+++|++|++|+..|..++. ++++...+|.+++..|.+++. |.|..|+..|+.|
T Consensus 2 d~~d~~~~~di~~~l~-~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMP-KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHhCCcccccccCC-HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 7899999999999999 689999999999999999999999886 478877889999999999995 9999999999999
Q ss_pred HHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHH
Q 000156 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (2015)
Q Consensus 349 l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~ 428 (2015)
++.|+.++++.|.+|+..++|.|+++++|+++.||+++..||.+++.. .+++.++|.|..+++++||++|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 689999999999999999999999999999
Q ss_pred HHHHhcChh-HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcC
Q 000156 429 FCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2015)
Q Consensus 429 ~~l~~~~~~-~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (2015)
.++..+.+. .+..+++.++|.+.++++|++++||++|.+|++.++..+|++.+.++++.|++.++++|++++++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a 234 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKA 234 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999887644 345778999999999999999999999999999999999998899999999999999999999875
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-22 Score=281.66 Aligned_cols=772 Identities=12% Similarity=0.134 Sum_probs=537.8
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh-hHHHHH
Q 000156 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR-YAKEVC 95 (2015)
Q Consensus 17 ~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~-~~~~v~ 95 (2015)
.+...+.+-..|.+|.+.|.+ +. ..|.|..|...+..-..+.+..+...|.-.|-.++++.-..... ....|-
T Consensus 19 l~~~~s~d~~~r~~Ae~~L~~-~~-----~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik 92 (852)
T 4fdd_A 19 LKESQSPDTTIQRTVQQKLEQ-LN-----QYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIK 92 (852)
T ss_dssp HHHHTCSCHHHHHHHHHHHHH-HT-----TSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHHH-HH-----hCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHH
Confidence 344567788899999888874 32 34666555443333336778888888877777666542111111 122344
Q ss_pred HHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh---hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC------cC
Q 000156 96 DAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV---DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI------IP 165 (2015)
Q Consensus 96 ~~LieK~l~-~k~~~k~~a~~~ll~~~E~~~~---~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~------i~ 165 (2015)
..|+.- ++ ..+.+|..+.+++-.++..+.+ ..+++.|...+.+.++.++.+++.+|..+++.++... -.
T Consensus 93 ~~ll~~-l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~ 171 (852)
T 4fdd_A 93 SECLNN-IGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP 171 (852)
T ss_dssp HHHHTT-TTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSC
T ss_pred HHHHHH-HcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcch
Confidence 445543 55 5678899998888888766532 3578888888999999999999999999999887631 12
Q ss_pred hhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhh
Q 000156 166 PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKEL 245 (2015)
Q Consensus 166 ~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~ 245 (2015)
+..+++.+..+|.+.+..||..|...+..+....+. .+...
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-----~~~~~---------------------------------- 212 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-----ALMLH---------------------------------- 212 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-----HHHTS----------------------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH-----HHHHH----------------------------------
Confidence 567899999999999999999988776433322110 00000
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChH
Q 000156 246 GQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFT 324 (2015)
Q Consensus 246 ~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~ 324 (2015)
++ ++ + +.+...+.+.++..|+.+++.|..++. .++.....+.
T Consensus 213 ------------------------~~--------~~---l--~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~ 255 (852)
T 4fdd_A 213 ------------------------ID--------SF---I--ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 255 (852)
T ss_dssp ------------------------HH--------HH---H--HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH
T ss_pred ------------------------HH--------HH---H--HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 00 00 0 123344566778889999999998874 4443334456
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhcchhhhHhHHHHHHHHh-----------cc-----------CcH
Q 000156 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRFLLPVLLEKL-----------KE-----------KKP 380 (2015)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~~~~~~llp~LL~kl-----------kd-----------kk~ 380 (2015)
.++..+.+.+.|....|+..|+.++..+++. .++.+.+|...++|.++..+ .| ..-
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 8889999999999999999999999998863 44557789999999999998 34 344
Q ss_pred HHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCH
Q 000156 381 TVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459 (2015)
Q Consensus 381 ~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~ 459 (2015)
.||.++..+|+.+... +..-+..+++.+...+++.+|.+|.+++..|..+.+.++. .+..+++.++|.+..++.|.++
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~ 414 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKA 414 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCH
Confidence 6899999999999876 2222455677777788899999999999999987766543 4557789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccc
Q 000156 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA 539 (2015)
Q Consensus 460 ~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 539 (2015)
.||.+|..+++.+...++......
T Consensus 415 ~Vr~~a~~~l~~l~~~~~~~~~~~-------------------------------------------------------- 438 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWVVSQPPDT-------------------------------------------------------- 438 (852)
T ss_dssp HHHHHHHHHHHHTHHHHHHSCTTT--------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhccchHHH--------------------------------------------------------
Confidence 999999999987665443210000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHH
Q 000156 540 SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 619 (2015)
Q Consensus 540 s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl 619 (2015)
-.++ . -+.++..|.+.+|..|.
T Consensus 439 --------------------------------------------------~~~~---l-----l~~L~~~L~d~~~~vr~ 460 (852)
T 4fdd_A 439 --------------------------------------------------YLKP---L-----MTELLKRILDSNKRVQE 460 (852)
T ss_dssp --------------------------------------------------THHH---H-----HHHHHHHHTCSSHHHHH
T ss_pred --------------------------------------------------HHHH---H-----HHHHHHHHhCCCHHHHH
Confidence 0011 1 14566777788999999
Q ss_pred HHHHHHHHHHHhc-cccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC-C-chhHHHHHHHHHHhh---h
Q 000156 620 EAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-F-PKKCVVLCLLGISER---V 693 (2015)
Q Consensus 620 ~a~e~L~~~v~~~-~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~-~-~~~~~~~il~~LveK---l 693 (2015)
.|+..|..+++.. ....++.+.++..|.. .+++.+.+....+++++..++...+. + ...++..++|.++++ +
T Consensus 461 ~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~--~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l 538 (852)
T 4fdd_A 461 AACSAFATLEEEACTELVPYLAYILDTLVF--AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNML 538 (852)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHH--HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhHhhHhHHHHHHHHHHH--HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhc
Confidence 9999999888763 3333444444433321 12222233344566777777765442 2 234667788888753 3
Q ss_pred cc--hhhhHHHHHHHHHHHhhhChhHH--HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCC
Q 000156 694 AD--IKTRAHAMKCLTTFSEAVGPGFI--FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQ 769 (2015)
Q Consensus 694 gD--~K~r~~a~~~L~~l~e~~~~~~V--l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~ 769 (2015)
.| ..++ .+.+++..++...+..++ +..+++ .++..+...+.... ....-... ++
T Consensus 539 ~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~------------~~~~~l~~~l~~~~--------~~~~~~~~-~~ 596 (852)
T 4fdd_A 539 KDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQ------------RCVNLVQKTLAQAM--------LNNAQPDQ-YE 596 (852)
T ss_dssp CTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHH------------HHHHHHHHHHHHHH--------HHHHCTTT-SC
T ss_pred ccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHH------------HHHHHHHHHHHHHH--------HhhcCCcc-cC
Confidence 33 2343 677888888887765432 222222 12333322221100 00000012 45
Q ss_pred CCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcc
Q 000156 770 SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRED 849 (2015)
Q Consensus 770 ~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvd 849 (2015)
..+..+|..++.+++.+...+|..+.+|+.+
T Consensus 597 ~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~------------------------------------------------- 627 (852)
T 4fdd_A 597 APDKDFMIVALDLLSGLAEGLGGNIEQLVAR------------------------------------------------- 627 (852)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHGGGGHHHHHT-------------------------------------------------
T ss_pred CCcchHHHHHHHHHHHHHHHHhHhHHHHhcC-------------------------------------------------
Confidence 5678899999999999999999887766511
Q ss_pred cccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChh
Q 000156 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 929 (2015)
Q Consensus 850 Is~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~ 929 (2015)
..+.+-++..+.|+++.+|..+...+..++......+.+. +.++++.|...|.+.+..++..|+.+++.++..+|.+
T Consensus 628 --~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~ 704 (852)
T 4fdd_A 628 --SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE 704 (852)
T ss_dssp --CCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGG
T ss_pred --CcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHh
Confidence 0133456666788889999999999999997665666666 4889999999998888899999999999999999999
Q ss_pred hHHhhhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHh
Q 000156 930 VEKSSKGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (2015)
Q Consensus 930 f~~~~~~llp~ll~~L~D~--k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l 1001 (2015)
|.+|+..+++.++..+.+. ...+++.+..|++.++..++ +..+++.+...|.+.. +.+.|..++..+...+
T Consensus 705 ~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~-d~~e~~~a~~~l~~li 783 (852)
T 4fdd_A 705 MQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTMI 783 (852)
T ss_dssp GGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSC-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHH
Confidence 9999999999999999875 45799999999999998752 4667777777886432 3457888888888777
Q ss_pred ccCCCCCChhhhHHH---HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHH
Q 000156 1002 TGLSGFPDAAHLLKP---ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065 (2015)
Q Consensus 1002 ~~~~~~~~~~~ll~p---l~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~ 1065 (2015)
...+.. +...+.. .+....+..++.+..-...|..+-..+|.+....++..|+|..+..+..
T Consensus 784 ~~~p~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 784 SVNPSG--VIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp HHCGGG--TGGGHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HhChHh--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHH
Confidence 655431 2222222 3445688899999999999999999999988999999999998877665
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-22 Score=274.44 Aligned_cols=756 Identities=13% Similarity=0.098 Sum_probs=515.0
Q ss_pred hhhh-cCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcC--CcHHHHHHHHHHHHHHHHHhc---------
Q 000156 17 EDRL-LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD--SNAPVQDKALDALIAYLKAAD--------- 84 (2015)
Q Consensus 17 ~erl-~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~D--sN~~vqe~~leal~~~l~~~~--------- 84 (2015)
.+.+ .+.+-..|.+|-+.|.+ +... +.|.| ...+...+.+ .+..+...|...|-.+++..-
T Consensus 10 L~~~~~s~d~~~r~~Ae~~L~~-~~~~---~~~~~---~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~ 82 (861)
T 2bpt_A 10 LENSILSPDQNIRLTSETQLKK-LSND---NFLQF---AGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHH-HHHH---CHHHH---HHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHcccCcCHHHHHHHHHHHHH-HHhh---CHHHH---HHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHH
Confidence 3445 67888899999999977 4321 12444 2233444444 367788777777766653210
Q ss_pred --hh-hh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC-ChhhHHHHHHHHHHH
Q 000156 85 --AD-AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK-VAKAVVPAIDVMFQA 155 (2015)
Q Consensus 85 --~~-~~-~~~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~K-npKv~~~~l~~L~~~ 155 (2015)
.. .. .....+-..|++-+....+.+|..+..++-.++..+-+ ..+++.|...+.+. ++.++..++.++..+
T Consensus 83 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l 162 (861)
T 2bpt_A 83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162 (861)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred hHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 00 11 12234555566653335688888888887777665433 35778888888777 999999999999999
Q ss_pred HHHhCCCC--c--ChhHHHhhhhhhhcCC--ChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCC
Q 000156 156 LSEFGAKI--I--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG 229 (2015)
Q Consensus 156 l~~fG~~~--i--~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~ 229 (2015)
.+.++... + ....+++.+...+.+. +..||..|..++..+..|++.. + .. ......
T Consensus 163 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-----~-~~--~~~~~~---------- 224 (861)
T 2bpt_A 163 CESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-----M-ER--EGERNY---------- 224 (861)
T ss_dssp HHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-----H-TS--HHHHHH----------
T ss_pred HHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-----c-cC--hhHHHH----------
Confidence 99888642 1 2456888888889988 8999999988877766554321 1 00 000000
Q ss_pred CCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHH
Q 000156 230 TARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL 309 (2015)
Q Consensus 230 ~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L 309 (2015)
++ ..+...+.+.+|+.|..+++.|
T Consensus 225 ---------------------------------------------------ll-----~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 225 ---------------------------------------------------LM-----QVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp ---------------------------------------------------HH-----HHHHHHHTCSCHHHHHHHHHHH
T ss_pred ---------------------------------------------------HH-----HHHHHHhcCCCHHHHHHHHHHH
Confidence 00 1122234667899999999999
Q ss_pred HHHhc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh----------------h-cchhhhHhHHHH
Q 000156 310 TKLAS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR----------------T-HFSGSSRFLLPV 370 (2015)
Q Consensus 310 ~~l~~-~~ki~~~~y~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~----------------~-~f~~~~~~llp~ 370 (2015)
..++. .+......+. .++..+...+.|.+..|+..|+.++..++.... . .+.++...++|.
T Consensus 249 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 328 (861)
T 2bpt_A 249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN 328 (861)
T ss_dssp HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHH
Confidence 88874 3332222334 677777788889999999999999999988642 1 134677899999
Q ss_pred HHHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000156 371 LLEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2015)
Q Consensus 371 LL~klkd-------kk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2015)
++..+.+ ....+|.++..+|..+... +...+..+++.+...+++.+|.+|..++..+..+.....+..+.++
T Consensus 329 ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~ 408 (861)
T 2bpt_A 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY 408 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred HHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999974 3458999999999998875 2223566777778888899999999999999988766554556678
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCC
Q 000156 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (2015)
Q Consensus 443 l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s 522 (2015)
++.++|.+...+.|.++.||.++..+++.+...++.. + . .
T Consensus 409 l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~-------~------------~-------------------- 448 (861)
T 2bpt_A 409 VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES-I-------D------------P-------------------- 448 (861)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG-S-------C------------T--------------------
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh-c-------C------------C--------------------
Confidence 8999999999999999999999999888887665531 0 0 0
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccC
Q 000156 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (2015)
Q Consensus 523 ~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll 602 (2015)
.. ..+++
T Consensus 449 ----------------------------------------------------------------~~-~~~~~-------- 455 (861)
T 2bpt_A 449 ----------------------------------------------------------------QQ-HLPGV-------- 455 (861)
T ss_dssp ----------------------------------------------------------------TT-THHHH--------
T ss_pred ----------------------------------------------------------------HH-HHHHH--------
Confidence 00 00111
Q ss_pred cHHHHhhhccCCHHHHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHhcCCCC--cccHHHHHHHHHHHHHHHHHHcC
Q 000156 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQ-----NLDQSVEILVRLVCMLPGW--SEKNVQVQQQVIEVINYLAATAT 675 (2015)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~-----~~~~~~~~Lv~~L~~~pg~--~DsN~qV~~~~Le~l~~l~~~~~ 675 (2015)
-+.++..|.+. ++.|..+...|..+++..+ ...++.+.++..|.. .+ .|.+..|+..+++++..++...+
T Consensus 456 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~--~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 456 VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIG--AANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHH--HHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH--HHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 13345556554 8888888888888877643 122333333333221 11 25556788999999999998766
Q ss_pred CCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC
Q 000156 676 KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 755 (2015)
Q Consensus 676 ~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~ 755 (2015)
.-....+..++|.+++.+.+... .... +...-.....+.++..++..|..++..+|....+
T Consensus 533 ~~~~~~~~~l~~~l~~~l~~~~~--------------~~~~-----i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 593 (861)
T 2bpt_A 533 DTVAETSASISTFVMDKLGQTMS--------------VDEN-----QLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP 593 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTT--------------SCGG-----GCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh--------------hhcc-----cCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 43344555666666665543100 0000 0000000123456777888888888877753222
Q ss_pred -hhhHHHHHHhcCCCCCch-hHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccc
Q 000156 756 -LKDLIDFCKDTGLQSSAA-ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES 833 (2015)
Q Consensus 756 -~k~li~~l~~~gL~~sn~-~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~ 833 (2015)
...+++.+... +.+.+. .||..+..+++.+....|..+.+|+..+-|.+++.+
T Consensus 594 ~~~~l~~~l~~~-l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l------------------------ 648 (861)
T 2bpt_A 594 VADMLMGLFFRL-LEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL------------------------ 648 (861)
T ss_dssp GHHHHHHHHHHH-HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHH-HccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh------------------------
Confidence 34577777666 777766 899999999999999999888877766555444333
Q ss_pred cCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccch--HHH
Q 000156 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN--KNL 911 (2015)
Q Consensus 834 ~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN--~~V 911 (2015)
.+++|.+|..++..+..++...+..+.+. ..++++.|...+.|.+ ..+
T Consensus 649 -----------------------------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~v 698 (861)
T 2bpt_A 649 -----------------------------NQVDSPVSITAVGFIADISNSLEEDFRRY-SDAMMNVLAQMISNPNARREL 698 (861)
T ss_dssp -----------------------------HCTTSHHHHHHHHHHHHHHHHTGGGGHHH-HHHHHHHHHHHHHCTTCCTTH
T ss_pred -----------------------------ccccHHHHHHHHHHHHHHHHHhchhccch-HHHHHHHHHHHhCCccccHhh
Confidence 34466788889999998887554444443 3778888888888765 889
Q ss_pred HHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC-----chhhHHH
Q 000156 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH-----LDKMVPY 975 (2015)
Q Consensus 912 ~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k-----------~~Vr~aa~~aL~~i~~~~g-----l~~ll~~ 975 (2015)
+..++.+++.++..+|..|.+|+..++|.++..+..+. ..+|.++.+++..++..++ +..+++.
T Consensus 699 r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~ 778 (861)
T 2bpt_A 699 KPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGT 778 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999987432 4699999999999998887 4445555
Q ss_pred HHHHH----hcCC--CChhHHHHHHHHHHHHhccC-CCC--CChh-hhHHHHHhhcC---CCChHHHHHHHHHHHHHHHH
Q 000156 976 VTTAL----TDAK--LGAEGRKDLFDWLSKQLTGL-SGF--PDAA-HLLKPASIAMT---DKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 976 l~~~L----~~~k--~~p~~R~~~l~~L~~~l~~~-~~~--~~~~-~ll~pl~~~L~---D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
+...| .+.. ++..+|..++.++......+ +.. +.+. .+++.+++++. +.+..|+..|.-++..+.+.
T Consensus 779 i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~ 858 (861)
T 2bpt_A 779 IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQ 858 (861)
T ss_dssp HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 44443 3310 14689999999888777766 332 2344 56777888765 67788999999888887654
Q ss_pred c
Q 000156 1043 G 1043 (2015)
Q Consensus 1043 ~ 1043 (2015)
+
T Consensus 859 ~ 859 (861)
T 2bpt_A 859 L 859 (861)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-21 Score=271.47 Aligned_cols=708 Identities=10% Similarity=0.085 Sum_probs=494.6
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhhhhh--hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcCh--h-HHHhh
Q 000156 98 IAAKCLTGRPKTVEKAQAVFMLWVELEAVD--VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--K-RILKM 172 (2015)
Q Consensus 98 LieK~l~~k~~~k~~a~~~ll~~~E~~~~~--~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~--k-~il~~ 172 (2015)
+++..++....+|..|.+-+..+-. .++ ..+-.|+..+.+.++.++..|...|.+.+..+-. .++. + .+...
T Consensus 18 ~l~~~~s~d~~~r~~Ae~~L~~~~~--~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~-~~~~~~~~~ik~~ 94 (852)
T 4fdd_A 18 LLKESQSPDTTIQRTVQQKLEQLNQ--YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ-NFPNGVTDFIKSE 94 (852)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG-GCCHHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHh--CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHH
Confidence 3444466678889999887765532 233 2233344444678889999999999887764322 2332 2 25567
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhcccc
Q 000156 173 LPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISE 252 (2015)
Q Consensus 173 l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~ 252 (2015)
+.+.+.+.++.||..+..++..+.++.+.+.. .
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p------------------------------------------ 127 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNW-----P------------------------------------------ 127 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----T------------------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----H------------------------------------------
Confidence 77778899999999888887777665432100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCCC-----CCCChHHH
Q 000156 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRI-----APGDFTEV 326 (2015)
Q Consensus 253 ~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki-----~~~~y~~l 326 (2015)
++ + +.+.+.+.+.+|..|..++..|..+.. .+.. .......+
T Consensus 128 ---------------------------~l---l--~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~i 175 (852)
T 4fdd_A 128 ---------------------------DL---L--PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 175 (852)
T ss_dssp ---------------------------TH---H--HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHH
T ss_pred ---------------------------HH---H--HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHH
Confidence 00 1 234555666778888999998888773 2221 12336778
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChH
Q 000156 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLV 402 (2015)
Q Consensus 327 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~----~~~l~ 402 (2015)
++.|.+.++|.+..|+..|+.++..+.......+..+...+++.++..+.|....||..+..+|..++... ...+.
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~ 255 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 255 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 88899999999999999999999988876666677788899999999999999999999999999998761 12356
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHHHHh-----------cC-----------CCH
Q 000156 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICMECL-----------ND-----------GTP 459 (2015)
Q Consensus 403 ~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~k~L-----------~D-----------s~~ 459 (2015)
.+++.+...+++..+.+|..++.|+..+.+... +..+.+++..++|.+...+ .| .+-
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 778888888899999999999999988654321 2234456788899999888 33 334
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccc
Q 000156 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA 539 (2015)
Q Consensus 460 ~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 539 (2015)
.||.+|..+++.+...+|+..+..+
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l------------------------------------------------------- 360 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHI------------------------------------------------------- 360 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHH-------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHH-------------------------------------------------------
Confidence 5677777777777666654311110
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHH
Q 000156 540 SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 619 (2015)
Q Consensus 540 s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl 619 (2015)
.+-+.+.+.|.+|+.|.
T Consensus 361 ---------------------------------------------------------------~~~l~~~l~~~~~~~R~ 377 (852)
T 4fdd_A 361 ---------------------------------------------------------------LPLLKELLFHHEWVVKE 377 (852)
T ss_dssp ---------------------------------------------------------------HHHHHHHHTCSSHHHHH
T ss_pred ---------------------------------------------------------------HHHHHHHhcCCCHHHHH
Confidence 12234456778999999
Q ss_pred HHHHHHHHHHHhccc-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHhhhcc--
Q 000156 620 EAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGISERVAD-- 695 (2015)
Q Consensus 620 ~a~e~L~~~v~~~~~-~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~-~~~~~~~~~il~~LveKlgD-- 695 (2015)
+|+..|+.+.++... .....+.++..+.. .++|.+..|+..++.++..+.+..+ ......+..+++.++..+.|
T Consensus 378 aa~~alg~i~~~~~~~~~~~l~~~l~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455 (852)
T ss_dssp HHHHHHHHTTTTTHHHHGGGHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence 999999988765322 12233445555432 4689999999999999998887543 22345677889999988876
Q ss_pred hhhhHHHHHHHHHHHhhhChh------HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHH--
Q 000156 696 IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCK-- 764 (2015)
Q Consensus 696 ~K~r~~a~~~L~~l~e~~~~~------~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~---~k~li~~l~-- 764 (2015)
.++|..|..+|..+++..+.. .+++.++..+ +..+.+....++..+..++...|..... +..+++.+.
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~ 534 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 534 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 478999999999999876543 2444444443 3334455444555555555554532111 233444433
Q ss_pred -hcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCC
Q 000156 765 -DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843 (2015)
Q Consensus 765 -~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d 843 (2015)
.. +.+.++.+| .++++++.+...+|..+.+|+..+-+.++..+...+.+..... .. .+
T Consensus 535 ~~~-l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~---------~~----------~~ 593 (852)
T 4fdd_A 535 WNM-LKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN---------AQ----------PD 593 (852)
T ss_dssp HHH-SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHH---------HC----------TT
T ss_pred HHh-cccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cC----------Cc
Confidence 33 677788887 7899999999999999999998888877777766543210000 00 00
Q ss_pred CCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhccccchHHHHHHHHHHHHHH
Q 000156 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAV 922 (2015)
Q Consensus 844 ~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~L 922 (2015)
..+..+-..|..+++.+..++...+..+.+.. -..++..+...+.|.+..|+..++.+++.+
T Consensus 594 -----------------~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l 656 (852)
T 4fdd_A 594 -----------------QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 656 (852)
T ss_dssp -----------------TSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -----------------ccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 00111223577888899998876544444321 057889999999999999999999999999
Q ss_pred HHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHH
Q 000156 923 ASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDW 996 (2015)
Q Consensus 923 a~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~ 996 (2015)
+..+|..|.+|+..++|.+++.|.+....+|..|..+++.++.++| +..+++.+...|.++..+..++..++.-
T Consensus 657 ~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~ 736 (852)
T 4fdd_A 657 TKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAIT 736 (852)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 9999999999999999999999998889999999999999999886 3556667777777654445677766666
Q ss_pred HHHHhccCCC--CCChhhhHHHHHhhcCC-CChHHHHHHHHHHHHHHHHcChh
Q 000156 997 LSKQLTGLSG--FPDAAHLLKPASIAMTD-KSSDVRKAAEACIVEILRAGGQE 1046 (2015)
Q Consensus 997 L~~~l~~~~~--~~~~~~ll~pl~~~L~D-~~~~VR~aA~~~L~~l~~~~G~~ 1046 (2015)
+.+.....+. .+.+..++.+++..|.+ .+.+.|..|..+|-.++..-+..
T Consensus 737 igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~ 789 (852)
T 4fdd_A 737 IGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSG 789 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHh
Confidence 6655444322 24567788888888854 56667999999999998886653
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=276.41 Aligned_cols=553 Identities=17% Similarity=0.165 Sum_probs=383.0
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHh
Q 000156 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (2015)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 366 (2015)
..+...+.+.+|+.|..|+..|..++.. +.+ ....++++.|...+ |.+..|+..++.+++.++..++.. .|...
T Consensus 13 ~~l~~~l~s~~~~~R~~A~~~l~~i~~~--~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~ 87 (588)
T 1b3u_A 13 AVLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHC 87 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGG
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHH--hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHH
Confidence 3577889999999999999999887631 111 12346778887766 777889999999998877665542 57788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH----hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000156 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2015)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~----~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2015)
++|.|...+.+....||+++..+|..++.. .+.. .+++.+....++.++.+|..++.++..+....+.. .
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~--~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~ 161 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----V 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----H
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----H
Confidence 999998888899999999999999999875 3332 34566656667889999999999998877665532 3
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCC
Q 000156 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (2015)
Q Consensus 443 l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s 522 (2015)
.+.++|.+..++.|.++.||.+|.++++.+...+|.+.. ...+-+
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~l~~-------------------------------- 206 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV---KSEIIP-------------------------------- 206 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH---HHTHHH--------------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH---HHHHHH--------------------------------
Confidence 478899999999999999999999999999988885321 111111
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccC
Q 000156 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (2015)
Q Consensus 523 ~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll 602 (2015)
T Consensus 207 -------------------------------------------------------------------------------- 206 (588)
T 1b3u_A 207 -------------------------------------------------------------------------------- 206 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHH
Q 000156 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (2015)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~ 682 (2015)
.+...+.+.+|..|..|++.|..+....++. ...+.++..+.. ...|.+..|+..+++++..++...+. ....
T Consensus 207 --~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~--~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~ 279 (588)
T 1b3u_A 207 --MFSNLASDEQDSVRLLAVEACVNIAQLLPQE-DLEALVMPTLRQ--AAEDKSWRVRYMVADKFTELQKAVGP--EITK 279 (588)
T ss_dssp --HHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-HHHHHTHHHHHH--HHTCSSHHHHHHHHHTHHHHHHHHCH--HHHH
T ss_pred --HHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHH--HccCCCHHHHHHHHHHHHHHHHHhCc--ccch
Confidence 1112223333444444444444333321110 001111111110 11334444444444444444433211 0112
Q ss_pred HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhChh----H----HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC
Q 000156 683 VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----F----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (2015)
Q Consensus 683 ~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~----~----Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~ 752 (2015)
..+++.++.-+.| ..+|..+..+|..+++..+.+ . +++.+... ..+++|+||..++.+|..+...+|..
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 2344555544444 346777777777777766543 2 33333333 36889999999999999988877753
Q ss_pred CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCcc
Q 000156 753 HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (2015)
Q Consensus 753 ~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~ 832 (2015)
. ....+++.+..+ +.+.++.||.+|...++.+....|... +..
T Consensus 359 ~-~~~~l~p~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~--------------------------------- 401 (588)
T 1b3u_A 359 N-TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--LSQ--------------------------------- 401 (588)
T ss_dssp H-HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH--HHH---------------------------------
T ss_pred H-HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHHHHhcCHHH--HHH---------------------------------
Confidence 2 134567777777 899999999999999998887776421 000
Q ss_pred ccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHH
Q 000156 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLV 912 (2015)
Q Consensus 833 ~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~ 912 (2015)
.+.+.+...+.|.+|++|..+++.+..+....+.... ...+++.|...+.|.+..|+
T Consensus 402 --------------------~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~Vr 458 (588)
T 1b3u_A 402 --------------------SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIR 458 (588)
T ss_dssp --------------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGGCSSHHHH
T ss_pred --------------------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHHHhcCCcHHHH
Confidence 0233455566788999999999999998874332211 25788999999999999999
Q ss_pred HHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChh
Q 000156 913 MATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAE 988 (2015)
Q Consensus 913 ~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----~~ll~~l~~~L~~~k~~p~ 988 (2015)
..|+.+++.++..+|..+ +...++|.+...+.|.+..+|.++..++..++..+|. ..++|.+...+.++ ++.
T Consensus 459 ~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~--~~~ 534 (588)
T 1b3u_A 459 EAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VAN 534 (588)
T ss_dssp HHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHH
T ss_pred HHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC--Cch
Confidence 999999999999999875 4678899999999999999999999999999998874 45667777777766 589
Q ss_pred HHHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHH
Q 000156 989 GRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
+|..++..+.......+.. .....+.| +...++|.+.+||.+|..++..+
T Consensus 535 Vr~~a~~~l~~l~~~~~~~-~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 535 VRFNVAKSLQKIGPILDNS-TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 9999999998877655431 12234445 66677999999999999998764
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=256.92 Aligned_cols=227 Identities=15% Similarity=0.186 Sum_probs=209.9
Q ss_pred CCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHH-HHHhccccCC--CCChhhHHHHHHhcc-ccchHHHHHHHH
Q 000156 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMATL 916 (2015)
Q Consensus 841 ~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~-ll~~a~~~I~--~~~~~eL~~~L~~rL-~DsN~~V~~~Al 916 (2015)
.+|+++++||.++|+++|.+.+.+++|++|++|++.|.. ++++ ++++. ...|++++..|++.+ +|+|..|+..|+
T Consensus 4 ~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 4 MASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp SCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hHhhcChhhhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 478999999999999999999999999999999999999 8875 46776 456799999999999 899999999999
Q ss_pred HHHHHHHHHhC-hhhH-HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc------C-chhhHHHHHHHHhcCCCCh
Q 000156 917 ITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKLGA 987 (2015)
Q Consensus 917 ~~l~~La~alg-~~f~-~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~------g-l~~ll~~l~~~L~~~k~~p 987 (2015)
++++.|+..++ +.|. +|...++|.++.+++|+++.|++++..||++++.++ + ++.+++.+...|+++ +|
T Consensus 83 ~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~ 160 (249)
T 2qk1_A 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP 160 (249)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--Ch
Confidence 99999999999 9999 999999999999999999999999999999999999 7 889999999999987 68
Q ss_pred hHHHHHHHHHHHHhccCCCC-----CCh-hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHH
Q 000156 988 EGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (2015)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~-----~~~-~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~ 1061 (2015)
.+|.+++.||...+...+.. +.+ ..+++.+..+|+|.+++||.+|.+|++.++.++|++.|.+++..|++.+++
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHH
Confidence 99999999999999877642 234 667777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 000156 1062 LILERIKLN 1070 (2015)
Q Consensus 1062 ~i~~~l~k~ 1070 (2015)
+|+++++++
T Consensus 241 ki~~~~~~~ 249 (249)
T 2qk1_A 241 KIEETVKTL 249 (249)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999863
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-21 Score=262.23 Aligned_cols=702 Identities=13% Similarity=0.128 Sum_probs=474.1
Q ss_pred hhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCC-cHHHHHHHHHHHHHHHHHhchh---hhhhHHH
Q 000156 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS-NAPVQDKALDALIAYLKAADAD---AGRYAKE 93 (2015)
Q Consensus 18 erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds-N~~vqe~~leal~~~l~~~~~~---~~~~~~~ 93 (2015)
+.|.+.+-+.|..+.+-+...+...... ..|..+.+.+...+.+. |+.+.+.++.++..+++..+.. ...+...
T Consensus 102 ~~l~~~~~~vr~~~~~~l~~i~~~~~p~--~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 179 (861)
T 2bpt_A 102 TALVSIEPRIANAAAQLIAAIADIELPH--GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNN 179 (861)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHGGG--TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHH
T ss_pred HHHCCCchHHHHHHHHHHHHHHHhhCcc--cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Confidence 3466777788888887777766542110 13445566667778888 9999999999999998875543 2345667
Q ss_pred HHHHHHHhhcC-C--ChhHHHHHHHHHHHHHhh-h-h------hhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC
Q 000156 94 VCDAIAAKCLT-G--RPKTVEKAQAVFMLWVEL-E-A------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK 162 (2015)
Q Consensus 94 v~~~LieK~l~-~--k~~~k~~a~~~ll~~~E~-~-~------~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~ 162 (2015)
+++.++.- +. . .+.+|..|.+++..+++. . . ...+++.|...+.+.+++++..++.+|..++..++..
T Consensus 180 ll~~l~~~-l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 180 ILIAIVQG-AQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHH-HSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHh-hcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777654 44 3 678999999998876543 1 1 1346777777788899999999999999999998764
Q ss_pred CcC-hh-HHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCc---cc
Q 000156 163 IIP-PK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR---KI 237 (2015)
Q Consensus 163 ~i~-~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R---~~ 237 (2015)
..+ +. .+++.+...+.+.+..||..|..++..+...... + . .+. . +. + ..|.+ ++
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~-~-~~~-----------~--~~--~-~~~~~~~~~~ 318 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID--I-A-YEL-----------A--QF--P-QSPLQSYNFA 318 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH--H-H-HHH-----------H--HC--T-TCSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--h-h-hhh-----------h--hc--c-CCchhhHHHH
Confidence 322 34 6777777888999999999999988777765421 0 0 000 0 00 0 01111 00
Q ss_pred hhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCC
Q 000156 238 RAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR 317 (2015)
Q Consensus 238 rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~k 317 (2015)
+..-. ..- ..--..-... ++ | ..+.+|..|+.+...|..++..-
T Consensus 319 ~~~~~-~il-~~ll~~l~~~---------~~--d----------------------~~d~~~~~r~~a~~~L~~l~~~~- 362 (861)
T 2bpt_A 319 LSSIK-DVV-PNLLNLLTRQ---------NE--D----------------------PEDDDWNVSMSAGACLQLFAQNC- 362 (861)
T ss_dssp HHHHH-HHH-HHHHHHTTCC---------CC--C-----------------------CCCCCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHH-HHH-HHHHHHHHhc---------cc--c----------------------cccccCcHHHHHHHHHHHHHHHc-
Confidence 00000 000 0000000000 00 0 01245899999999998877421
Q ss_pred CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh-hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000156 318 IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (2015)
Q Consensus 318 i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~-~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (2015)
....+..+++.+...+.|.+..++..|+.+++.++.+.+ ..+.+|...++|.++..++|.++.||.++..++..+...
T Consensus 363 -~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 363 -GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp -GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -cHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 122356788899999999999999999999999998876 678899999999999999999999999999999888865
Q ss_pred -c-----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC---hhHHHHhhhhHHHHHHHHhc--CCCHHHHHHH
Q 000156 397 -G-----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLN--DGTPEVRDAA 465 (2015)
Q Consensus 397 -~-----~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~---~~~l~~~l~~l~p~l~k~L~--Ds~~~VR~aA 465 (2015)
+ ...+..+++.+..++++. +.+|..++..|..+.+... +..+.++++.+++.+.+++. |.++.||.++
T Consensus 442 ~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a 520 (861)
T 2bpt_A 442 VAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASA 520 (861)
T ss_dssp HGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHH
Confidence 1 134778899999999876 9999999999998887654 34566788999999999998 5558999999
Q ss_pred HHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCC
Q 000156 466 FSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGK 545 (2015)
Q Consensus 466 ~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~ 545 (2015)
.++++.+....|+. +.+++..+-+.-.+.+.+.+.-. .
T Consensus 521 ~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~---------------------------------------~-- 558 (861)
T 2bpt_A 521 FSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVD---------------------------------------E-- 558 (861)
T ss_dssp HHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSC---------------------------------------G--
T ss_pred HHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhh---------------------------------------c--
Confidence 99999999999975 66777766554444443321000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHH
Q 000156 546 RPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSL 625 (2015)
Q Consensus 546 ~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L 625 (2015)
...+.++-+ .....|..+++.|
T Consensus 559 -----------------------------------------~i~~~~~~~-----------------~~~~~~~~~~~~l 580 (861)
T 2bpt_A 559 -----------------------------------------NQLTLEDAQ-----------------SLQELQSNILTVL 580 (861)
T ss_dssp -----------------------------------------GGCCHHHHH-----------------HHHHHHHHHHHHH
T ss_pred -----------------------------------------ccCChhhHH-----------------HHHHHHHHHHHHH
Confidence 000100000 0011234444444
Q ss_pred HHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc--h-hhhHHH
Q 000156 626 RQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--I-KTRAHA 702 (2015)
Q Consensus 626 ~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~-K~r~~a 702 (2015)
..++...+. -....+..+++.++.-+.+ . .+|..+
T Consensus 581 ~~l~~~~~~------------------------------------------~~~~~~~~l~~~l~~~l~~~~~~~v~~~~ 618 (861)
T 2bpt_A 581 AAVIRKSPS------------------------------------------SVEPVADMLMGLFFRLLEKKDSAFIEDDV 618 (861)
T ss_dssp HHHHHHCGG------------------------------------------GTGGGHHHHHHHHHHHHHSTTGGGTHHHH
T ss_pred HHHHHHhhh------------------------------------------hhHHHHHHHHHHHHHHHccCCCCcHHHHH
Confidence 444433221 0111222333333333222 2 456667
Q ss_pred HHHHHHHHhhhChhH------HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCCCc--h
Q 000156 703 MKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSA--A 773 (2015)
Q Consensus 703 ~~~L~~l~e~~~~~~------Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~sn--~ 773 (2015)
..++..++...+.++ +++.++..+ .++++.++..++..+..++..+|.... .+..+++.+... +.+.+ +
T Consensus 619 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~ 696 (861)
T 2bpt_A 619 FYAISALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM-ISNPNARR 696 (861)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH-HHCTTCCT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHH-hCCccccH
Confidence 777777776655433 344444454 678999999999999999988874211 134566666665 77665 8
Q ss_pred hHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccc
Q 000156 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGK 853 (2015)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~ 853 (2015)
.||..+..+++.|....|+.+.+|+..+-|.++..++. .. ++ .
T Consensus 697 ~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~-----~~-~~--------------------~----------- 739 (861)
T 2bpt_A 697 ELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNT-----KP-EN--------------------G----------- 739 (861)
T ss_dssp THHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC-----CC-SS--------------------S-----------
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc-----CC-CC--------------------C-----------
Confidence 99999999999999999999999998888777665421 00 00 0
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhcc---ccCCCCChhhHHHHHHhccccc----hHHHHHHHHHHHHHHHHHh
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEAN---KRIQPAGTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAM 926 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~---~~I~~~~~~eL~~~L~~rL~Ds----N~~V~~~Al~~l~~La~al 926 (2015)
.++.. +..+.+|..+++.+..++...+ ..+.+. ..+++..|...+.|. +..|+..|+.+++.|+..+
T Consensus 740 -d~d~~----~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~-~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 740 -TLEAL----DYQIKVLEAVLDAYVGIVAGLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp -SHHHH----HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred -ChHHH----HHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHc
Confidence 00100 1136789999999999997543 223333 377888888888885 8899999999999999999
Q ss_pred -ChhhHHhhh-HHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHhc
Q 000156 927 -GPAVEKSSK-GVLSDILKCLG---DNKKHMRECTLTVLDAWLAAV 967 (2015)
Q Consensus 927 -g~~f~~~~~-~llp~ll~~L~---D~k~~Vr~aa~~aL~~i~~~~ 967 (2015)
|+.|.+|.. .++|.+++.+. +....+++.|.=+++.+.+.+
T Consensus 814 ~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 814 PDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp TTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999 99999999887 455678888888887776544
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-20 Score=260.39 Aligned_cols=722 Identities=12% Similarity=0.077 Sum_probs=483.4
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcC--CChhHHHHHHHHHHHHH----------------h
Q 000156 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWV----------------E 122 (2015)
Q Consensus 61 v~DsN~~vqe~~leal~~~l~~~~~~~~~~~~~v~~~LieK~l~--~k~~~k~~a~~~ll~~~----------------E 122 (2015)
+.+.+..++..|.+.|..|-+.. ...++..|+.-..+ ..+.+|..|..++-.++ +
T Consensus 10 ~~s~d~~~r~~A~~~L~~~~~~~-------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 10 TVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHhcC-------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 34556677777777776654321 12233333333222 24667777655544332 1
Q ss_pred hh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhhhhhhcCC--ChhHHHHHHHHHHHHHHH
Q 000156 123 LE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRW 198 (2015)
Q Consensus 123 ~~--~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~ 198 (2015)
+. .-..+-+.|+.++.+-++++ ..+..++..+....++. -....+++.+..++.+. +..+|..+..++..+..+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcc-cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 21 12355566788888888898 88999998888776541 13457899999999999 999999999998888877
Q ss_pred hCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000156 199 IGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP 278 (2015)
Q Consensus 199 lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~ 278 (2015)
++++.+ ...-+..+.
T Consensus 161 ~~~~~~-----~~~~~~ll~------------------------------------------------------------ 175 (876)
T 1qgr_A 161 IDPEQL-----QDKSNEILT------------------------------------------------------------ 175 (876)
T ss_dssp SCHHHH-----GGGHHHHHH------------------------------------------------------------
T ss_pred cCHhhH-----HhHHHHHHH------------------------------------------------------------
Confidence 643211 110000000
Q ss_pred ccccccCcchhhhhhhccC--ChHHHHHHHHHHHHHhcC--CCCCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Q 000156 279 VDILTPLEKSGFWEGVKAT--KWSERKDAVAELTKLAST--KRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353 (2015)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~--kWkeR~eaL~~L~~l~~~--~ki~~~~y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La 353 (2015)
.+...+.+. +|..|..+++.|..++.. ..+....+ ..+++.+...+.|.+..++..|+.|+..++
T Consensus 176 ----------~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 176 ----------AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp ----------HHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ----------HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 122222222 567788888888776531 00111001 136777777778888899999999999999
Q ss_pred HHhhhcchhhhH-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------------------CCC-----hHhHHHH
Q 000156 354 RGLRTHFSGSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------------------CLN-----LVDVVED 407 (2015)
Q Consensus 354 ~~L~~~f~~~~~-~llp~LL~klkdkk~~V~~aa~~aL~al~~~~--------------------~~~-----l~~il~~ 407 (2015)
....+.|.+|+. .+++.++..+++....|+..+.+++..++... +.. +..+++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 325 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHH
Confidence 998888999999 99999999999999999999988888776530 011 2445565
Q ss_pred HHHHhh-------cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchH
Q 000156 408 VKTSVK-------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (2015)
Q Consensus 408 l~~~L~-------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~ 480 (2015)
++..+. +.+|.+|..++..|..+....+. ..++.++|.+...+.|.++.||.+|..+++.+....+...
T Consensus 326 ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHH
Confidence 666553 34678888877777776665442 2346677777778888888888888877766553332111
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCC
Q 000156 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 560 (2015)
Q Consensus 481 ~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~ 560 (2015)
+.+++.
T Consensus 402 ~~~~~~-------------------------------------------------------------------------- 407 (876)
T 1qgr_A 402 LKPLVI-------------------------------------------------------------------------- 407 (876)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 111110
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccc---cch
Q 000156 561 KPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQ 637 (2015)
Q Consensus 561 k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~---~~~ 637 (2015)
. +-+.++..|.+.+|..|..|+..|..+...... ...
T Consensus 408 ---------------------------------------~-~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 408 ---------------------------------------Q-AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp ---------------------------------------H-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred ---------------------------------------H-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 1 113456677788899999999999988876432 123
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--------------CCchhHHHHHHHHHHhhhcch-----hh
Q 000156 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--------------KFPKKCVVLCLLGISERVADI-----KT 698 (2015)
Q Consensus 638 ~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~--------------~~~~~~~~~il~~LveKlgD~-----K~ 698 (2015)
..+.++..+.. .+.|. ..|...++.++..++..++ .....++..+++.|+..+.+. .+
T Consensus 448 ~l~~~l~~l~~--~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 448 YLAPLLQCLIE--GLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp THHHHHHHHHH--HTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTH
T ss_pred HHHHHHHHHHH--HHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhH
Confidence 34444443322 34554 7788899999999887653 123356788899888877652 57
Q ss_pred hHHHHHHHHHHHhhhChh------HHHHHHHHHhhh----------CCC----hhHHHHHHHHHHHHHHHhC-CCCC-Ch
Q 000156 699 RAHAMKCLTTFSEAVGPG------FIFERLYKIMKD----------HKN----PKVLSEGILWMVSAVEDFG-VSHL-KL 756 (2015)
Q Consensus 699 r~~a~~~L~~l~e~~~~~------~Vl~~L~~~l~~----------~Kn----pKv~~~~l~~L~~li~~fG-~~~l-~~ 756 (2015)
|..+.++|..++...+.+ .+++.++..+.. ..+ +.++..++.++..++..+| .... -+
T Consensus 525 r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 604 (876)
T 1qgr_A 525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS 604 (876)
T ss_dssp HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH
Confidence 888999999999877643 223333333211 111 5567788888888887766 2211 23
Q ss_pred hhHHHHHHhcCCCCCc--hhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCcccc
Q 000156 757 KDLIDFCKDTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (2015)
Q Consensus 757 k~li~~l~~~gL~~sn--~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~ 834 (2015)
..+++.+..+ +.+.+ +.||..+..+++.+....|..+.+|+..+-|.+..
T Consensus 605 ~~l~~~l~~~-l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~--------------------------- 656 (876)
T 1qgr_A 605 DVVMASLLRM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGI--------------------------- 656 (876)
T ss_dssp HHHHHHHHHH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHH-HHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------------------------
Confidence 5677777776 77765 48999999999999998888777766544443333
Q ss_pred CCCCCCCCCCCCCcccccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc--chHHH
Q 000156 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNL 911 (2015)
Q Consensus 835 ~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~D--sN~~V 911 (2015)
.+.+. +|.+|..++..+..++...+..+.+. ..+++..|...|.+ .+..+
T Consensus 657 --------------------------~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~ 709 (876)
T 1qgr_A 657 --------------------------GLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF-CDEVMQLLLENLGNENVHRSV 709 (876)
T ss_dssp --------------------------HHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHTCTTSCGGG
T ss_pred --------------------------HHcCcchHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHhCCccccHHh
Confidence 33333 67899999999999987554455554 47888888888866 46779
Q ss_pred HHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC------------
Q 000156 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------ 968 (2015)
Q Consensus 912 ~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k-----------~~Vr~aa~~aL~~i~~~~g------------ 968 (2015)
+..++.+++.++..+|.+|.+|+..++|.+++.+.++. ..+|..+..++..++..++
T Consensus 710 ~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~ 789 (876)
T 1qgr_A 710 KPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVML 789 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGG
T ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHH
Confidence 99999999999999999999999999999999997653 3799999999999887753
Q ss_pred chhhHHHHHHHH----hcCCCChhHHHHHHHHHHHHhccCCC-C--CC-hhhhHHHHHh-hcCCCChHHHHHHHHHHHHH
Q 000156 969 LDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSG-F--PD-AAHLLKPASI-AMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 969 l~~ll~~l~~~L----~~~k~~p~~R~~~l~~L~~~l~~~~~-~--~~-~~~ll~pl~~-~L~D~~~~VR~aA~~~L~~l 1039 (2015)
+..+++.+...+ .++..+..+|..++..|......++. . +. ...++.+++. ++.|.+++||.+|..+++.+
T Consensus 790 ~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 790 VQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp SGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 234556555555 33311467898877777766655543 1 11 2356777887 99999999999999999887
Q ss_pred HHH
Q 000156 1040 LRA 1042 (2015)
Q Consensus 1040 ~~~ 1042 (2015)
.+.
T Consensus 870 ~~~ 872 (876)
T 1qgr_A 870 RKL 872 (876)
T ss_dssp HHH
T ss_pred HHh
Confidence 643
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=243.35 Aligned_cols=228 Identities=18% Similarity=0.259 Sum_probs=209.9
Q ss_pred CCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHH
Q 000156 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLG 920 (2015)
Q Consensus 842 ~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~ 920 (2015)
+|.++++||.++|++.+++.+.|++|++|++|++.|..++..+ ..+....+.+++..|+.++. |.|..|+..|+.+++
T Consensus 4 ~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 4 MDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp HHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhCCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999863 34555557999999999995 999999999999999
Q ss_pred HHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000156 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2015)
Q Consensus 921 ~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2015)
.|+..+|+.|.+|+..++|.++.+++|++..||+++..+|.+++..++++.++|.+...|.++ ++.+|.+++.||...
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987 699999999999998
Q ss_pred hccCCCC----CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccC
Q 000156 1001 LTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (2015)
Q Consensus 1001 l~~~~~~----~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~ 1072 (2015)
+..+... ..+..+++.+..+|+|++++||++|..|++.++.++|++.+.+++..|++.++++|.++++++..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8776421 24566777799999999999999999999999999999999999999999999999999999764
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-19 Score=248.49 Aligned_cols=727 Identities=14% Similarity=0.105 Sum_probs=485.8
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcC--CcHHHHHHHHHHHHHHHHHhc--------h-
Q 000156 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD--SNAPVQDKALDALIAYLKAAD--------A- 85 (2015)
Q Consensus 17 ~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~D--sN~~vqe~~leal~~~l~~~~--------~- 85 (2015)
.+.+.+.+-..|.+|-+.|.+ +... .-|. |...+-..+.+ .+..+...|..+|..++.... .
T Consensus 7 L~~~~s~d~~~r~~A~~~L~~-~~~~---~~~~---~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 7 LEKTVSPDRLELEAAQKFLER-AAVE---NLPT---FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp HHGGGCSCHHHHHHHHHHHHH-HHHH---HHHH---HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHH-HHhc---Chhh---HHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 345567788899999999855 4321 1123 33334455555 468899999888887763210 0
Q ss_pred --hhh-hhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHH
Q 000156 86 --DAG-RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQA 155 (2015)
Q Consensus 86 --~~~-~~~~~v~~~LieK~l~-~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~L~~~ 155 (2015)
... .....+-..|++- +. ..+.+ ..+..++-.++..+.+ ..+++.|...+.+. ++.++..++.+|..+
T Consensus 80 w~~l~~~~~~~ik~~ll~~-l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHT-LGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHH-TTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHH-hCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 011 1123344445553 44 45566 6667776666655322 46788888888888 999999999999999
Q ss_pred HHHhCCCCc--ChhHHHhhhhhhhcCC--ChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000156 156 LSEFGAKII--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (2015)
Q Consensus 156 l~~fG~~~i--~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (2015)
+..++...+ ....+++.+...+.+. +..||..|...+..+..+++.. +... .....
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~-------~~~~~------------ 217 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-FDKE-------SERHF------------ 217 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH-HTSH-------HHHHH------------
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhH-------HHHHH------------
Confidence 987653211 2456788888888887 6899999998888877665431 1000 00000
Q ss_pred CCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHH
Q 000156 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK 311 (2015)
Q Consensus 232 ~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~ 311 (2015)
++ +.+.+.+.+.+|+.|..+++.|..
T Consensus 218 -------------------------------------------------il-----~~l~~~~~~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 218 -------------------------------------------------IM-----QVVCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp -------------------------------------------------HH-----HHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -------------------------------------------------HH-----HHHHHHcCCCCHHHHHHHHHHHHH
Confidence 00 011112234456788889998888
Q ss_pred Hhc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh------------------hc---chhhhHhHH
Q 000156 312 LAS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR------------------TH---FSGSSRFLL 368 (2015)
Q Consensus 312 l~~-~~ki~~~~y~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~------------------~~---f~~~~~~ll 368 (2015)
++. .++.....+. .++..+...+.|.+..|+..|+.++..+++... .. ..++...++
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 323 (876)
T 1qgr_A 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (876)
T ss_dssp HHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHh
Confidence 774 4443333344 677888788888888999999999999987531 11 124568899
Q ss_pred HHHHHHhc-------cCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000156 369 PVLLEKLK-------EKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (2015)
Q Consensus 369 p~LL~klk-------dkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (2015)
|.++..+. +....+|.++..++..+... +..-++.+++.+...+++.+|.+|..++..+..+.....+..+.
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~ 403 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999986 34567999999999999876 21224567777778888999999999999998877666545566
Q ss_pred HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchH-HHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCC
Q 000156 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519 (2015)
Q Consensus 441 ~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~-~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~ 519 (2015)
.+++.++|.+..++.|.++.||.+|..+++.+...++... ..+++
T Consensus 404 ~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l---------------------------------- 449 (876)
T 1qgr_A 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL---------------------------------- 449 (876)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH----------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH----------------------------------
Confidence 7789999999999999999999999999998887765310 00000
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhh
Q 000156 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLG 599 (2015)
Q Consensus 520 ~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~ 599 (2015)
+.+
T Consensus 450 ------------------------------------------------------------------------~~~----- 452 (876)
T 1qgr_A 450 ------------------------------------------------------------------------APL----- 452 (876)
T ss_dssp ------------------------------------------------------------------------HHH-----
T ss_pred ------------------------------------------------------------------------HHH-----
Confidence 000
Q ss_pred ccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhcc---------------ccchHHHHHHHHHhcC-CCCcccHHHHHHHH
Q 000156 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ---------------NLDQSVEILVRLVCML-PGWSEKNVQVQQQV 663 (2015)
Q Consensus 600 ~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~---------------~~~~~~~~Lv~~L~~~-pg~~DsN~qV~~~~ 663 (2015)
-+.++..|.+. ++.|..++..|..++...+ ...++.+.++..|... ....+.+..+...+
T Consensus 453 ---l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~ 528 (876)
T 1qgr_A 453 ---LQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSA 528 (876)
T ss_dssp ---HHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHH
T ss_pred ---HHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHH
Confidence 02334444443 6667777777766665522 1223444444433211 00111233466889
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc-----------------hhhhHHHHHHHHHHHhhhC-hh------HHH
Q 000156 664 IEVINYLAATATKFPKKCVVLCLLGISERVAD-----------------IKTRAHAMKCLTTFSEAVG-PG------FIF 719 (2015)
Q Consensus 664 Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD-----------------~K~r~~a~~~L~~l~e~~~-~~------~Vl 719 (2015)
++++..++...+.-....+..+++.+++.+.+ ..++..+..+|..++...+ .. .++
T Consensus 529 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~ 608 (876)
T 1qgr_A 529 YESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVM 608 (876)
T ss_dssp HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHH
T ss_pred HHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHH
Confidence 99999999877655555677888888887653 2346677888888888777 32 234
Q ss_pred HHHHHHhhhCCC--hhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCC-chhHHHHHHHHHHHHHHHhChhHH
Q 000156 720 ERLYKIMKDHKN--PKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSS-AAATRNATIKLLGALHKFVGPDIK 795 (2015)
Q Consensus 720 ~~L~~~l~~~Kn--pKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~s-n~~VR~aA~~ll~~Ly~~~G~~l~ 795 (2015)
+.++..+ .+.+ +.++..++.++..++..+|....+ +..+++.+... +.+. ++.||.+|..+++.|...+|..+.
T Consensus 609 ~~l~~~l-~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 686 (876)
T 1qgr_A 609 ASLLRMF-QSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG-LKNYAEYQVCLAAVGLVGDLCRALQSNII 686 (876)
T ss_dssp HHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH-HHHCTTHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHH-HhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444443 3333 578999999999999887754222 45677877776 8877 899999999999999999998777
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHH
Q 000156 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (2015)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale 875 (2015)
+|+..+-+.+++.+.. .+.+..+|..++.
T Consensus 687 ~~~~~i~~~l~~~l~~---------------------------------------------------~~~~~~~~~~~~~ 715 (876)
T 1qgr_A 687 PFCDEVMQLLLENLGN---------------------------------------------------ENVHRSVKPQILS 715 (876)
T ss_dssp HHHHHHHHHHHHHHTC---------------------------------------------------TTSCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHhCC---------------------------------------------------ccccHHhhHHHHH
Confidence 7665554444433211 0123456778888
Q ss_pred HHHHHHHhccccCCCCChhhHHHHHHhccccc-----------hHHHHHHHHHHHHHHHHHhCh----------hhHHhh
Q 000156 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDS-----------NKNLVMATLITLGAVASAMGP----------AVEKSS 934 (2015)
Q Consensus 876 ~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds-----------N~~V~~~Al~~l~~La~alg~----------~f~~~~ 934 (2015)
.+..++...+..+.+. +..+++.|...+.+. ...++..+++++..++..+|. .|.+|+
T Consensus 716 ~l~~i~~~~g~~~~~~-l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 794 (876)
T 1qgr_A 716 VFGDIALAIGGEFKKY-LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRV 794 (876)
T ss_dssp HHHHHHHHHGGGGGGG-HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGH
T ss_pred HHHHHHHHhchhHHHH-HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHH
Confidence 8888887544445443 467777777766543 237888999999999988864 578898
Q ss_pred hHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc--------hhhHHHHHH-HHhcCCCChhHHHHHHHHH
Q 000156 935 KGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL--------DKMVPYVTT-ALTDAKLGAEGRKDLFDWL 997 (2015)
Q Consensus 935 ~~llp~ll~~L~D~--k~~Vr~aa~~aL~~i~~~~gl--------~~ll~~l~~-~L~~~k~~p~~R~~~l~~L 997 (2015)
..+++.+...+.|. ...||.+|..||+.++..+|- +.+++.+.. .+.++ ++.+|..+...+
T Consensus 795 ~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~--~~~~r~~a~~a~ 866 (876)
T 1qgr_A 795 EFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSK--TNKAKTLARWAT 866 (876)
T ss_dssp HHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcC--CHhHHHHHHHHH
Confidence 88887777776777 789999999999999999875 234555666 77665 578887655444
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-22 Score=230.55 Aligned_cols=218 Identities=19% Similarity=0.244 Sum_probs=193.4
Q ss_pred HHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHH
Q 000156 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (2015)
Q Consensus 592 ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~-~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l 670 (2015)
+++...+...+++++..+|+|++||.|++|++.|.+.+.+. .......+.+++|+.. ++.|+|++|..++|+++..+
T Consensus 37 ~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~l--r~~d~N~~v~~~~L~~L~~l 114 (266)
T 2of3_A 37 SQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL--RFFETNPAALIKVLELCKVI 114 (266)
T ss_dssp HHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHH--HTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH
Confidence 45566777889999999999999999999999999998763 3333456788999864 57899999999999999999
Q ss_pred HHHc----CCCchhHHHHHHHHHHhhhcchh--hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000156 671 AATA----TKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVS 744 (2015)
Q Consensus 671 ~~~~----~~~~~~~~~~il~~LveKlgD~K--~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~ 744 (2015)
+..+ ..++...+..++|.|++|+||+| +|+.++++|..+++.++|..+++.++.++ .+||||+|.+|+.++..
T Consensus 115 ~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 115 VELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHH
Confidence 8765 34677778999999999999986 89999999999999999999999999975 89999999999999999
Q ss_pred HHHHhCCCCCChhhHH---HHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcC
Q 000156 745 AVEDFGVSHLKLKDLI---DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (2015)
Q Consensus 745 li~~fG~~~l~~k~li---~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~ 816 (2015)
+++.||.. . ...+ +.+.++ ++|+|++||++|+++++++|+++|+.++.+++++++..++.|++.|...
T Consensus 194 li~~~G~~--~-~~~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 194 YITNAGIS--P-LKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHHCSG--G-GGGGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC--c-cccccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 99999986 2 3356 778887 9999999999999999999999999999999999999999999999753
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-20 Score=246.81 Aligned_cols=529 Identities=14% Similarity=0.136 Sum_probs=376.6
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-c-CCChHhH
Q 000156 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-G-CLNLVDV 404 (2015)
Q Consensus 327 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~-~~~l~~i 404 (2015)
+..|...+.+.+..++..|++.++.++..++.. .....++|.|.+.. |....||..+..+|..++.+ + ......+
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~--~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~l 88 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCL 88 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH--HHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGG
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHH--HHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 556666778888889999999999988776642 44567788777666 66778888777777765543 0 1123456
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHH
Q 000156 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (2015)
Q Consensus 405 l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~ 484 (2015)
++.+...+.+.++.+|..++..|..+....++..+ .+.++|.+..+..+.+..+|.+|..+++.+...++...
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~---~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~---- 161 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDL---EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---- 161 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHH---HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH----
Confidence 66666555667777777777777776666554332 24456666666666677777777776665544433110
Q ss_pred HHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 000156 485 IEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSA 564 (2015)
Q Consensus 485 l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~ 564 (2015)
++.
T Consensus 162 --------~~~--------------------------------------------------------------------- 164 (588)
T 1b3u_A 162 --------KAE--------------------------------------------------------------------- 164 (588)
T ss_dssp --------HHH---------------------------------------------------------------------
T ss_pred --------HHH---------------------------------------------------------------------
Confidence 000
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHH
Q 000156 565 KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644 (2015)
Q Consensus 565 ~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~ 644 (2015)
+.+-+...+.+.+|..|..+++.|..+....+.. ...+.++.
T Consensus 165 -------------------------------------l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~l~~ 206 (588)
T 1b3u_A 165 -------------------------------------LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD-NVKSEIIP 206 (588)
T ss_dssp -------------------------------------HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-HHHHTHHH
T ss_pred -------------------------------------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH-hHHHHHHH
Confidence 0123334566778889999999998887653321 11222333
Q ss_pred HHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhChhHH----
Q 000156 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFI---- 718 (2015)
Q Consensus 645 ~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~~V---- 718 (2015)
.|.. .+.|.+..|+..+++.+..++...+. ......++|.+...+.| .++|..+.++|..+++..+++..
T Consensus 207 ~l~~--~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 282 (588)
T 1b3u_A 207 MFSN--LASDEQDSVRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDL 282 (588)
T ss_dssp HHHH--HHTCSCHHHHTTHHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTH
T ss_pred HHHH--HhcCCcHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHH
Confidence 3321 23577788999999999998886542 22345577777766666 36899999999999998876544
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC---ChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHH
Q 000156 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL---KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (2015)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l---~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~ 795 (2015)
++.++.. ..+.++.||..++..|..+...+|.... ....+++.+..+ +.+.++.||.++..+++.+...+|....
T Consensus 283 ~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~~ 360 (588)
T 1b3u_A 283 VPAFQNL-MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDNT 360 (588)
T ss_dssp HHHHHHH-HTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHHH
T ss_pred HHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhHhHH
Confidence 4444444 3678999999999999999988775311 245688888888 9999999999999999988877775311
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHH
Q 000156 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (2015)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale 875 (2015)
+. .+.+.++..+.|.++.+|..+++
T Consensus 361 --~~-----------------------------------------------------~l~p~l~~~l~d~~~~Vr~~a~~ 385 (588)
T 1b3u_A 361 --IE-----------------------------------------------------HLLPLFLAQLKDECPEVRLNIIS 385 (588)
T ss_dssp --HH-----------------------------------------------------HTHHHHHHHHTCSCHHHHHHHHT
T ss_pred --HH-----------------------------------------------------HHHHHHHHHhCCCchHHHHHHHH
Confidence 00 13345666677888999999999
Q ss_pred HHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHH
Q 000156 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (2015)
Q Consensus 876 ~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~a 955 (2015)
.+..++...+.. .....+++.|...+.|.++.++..++.+++.++..+|..+ +...++|.++..|.|....||.+
T Consensus 386 ~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~ 460 (588)
T 1b3u_A 386 NLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp TCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHH
Confidence 999888642110 1125678888888899999999999999999999999874 34578999999999999999999
Q ss_pred HHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHH
Q 000156 956 TLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKA 1031 (2015)
Q Consensus 956 a~~aL~~i~~~~gl----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~a 1031 (2015)
|..++..++..+|. +.++|.+...+.++ +..+|..++..+.......+.......+++.+..++.|.+++||..
T Consensus 461 a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~ 538 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP--NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHH
Confidence 99999999999874 45666666555555 5789998888877655433222223456666889999999999999
Q ss_pred HHHHHHHHHHHcChhHH
Q 000156 1032 AEACIVEILRAGGQETI 1048 (2015)
Q Consensus 1032 A~~~L~~l~~~~G~~~~ 1048 (2015)
+..++..+...+|.+.+
T Consensus 539 a~~~l~~l~~~~~~~~~ 555 (588)
T 1b3u_A 539 VAKSLQKIGPILDNSTL 555 (588)
T ss_dssp HHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHHHhchhhh
Confidence 99999999999997643
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=242.40 Aligned_cols=218 Identities=17% Similarity=0.220 Sum_probs=164.7
Q ss_pred HHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHH------HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC---
Q 000156 606 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI------LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK--- 676 (2015)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~------Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~--- 676 (2015)
+.++|.|++||+|++|+++|.+.+..........+. +.+.|.+ .++|+|++|++.+++++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk--~l~DsN~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQ--YITDSNVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHH--HTTCSSHHHHHHHHHHHHHHHTTCC---C
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 668999999999999999999999774322111111 1222322 46799999999999999999986542
Q ss_pred ---CchhHHHHHHHHHHhh-hcchh--hhHHHHHHHHHHHhhhCh-hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHh
Q 000156 677 ---FPKKCVVLCLLGISER-VADIK--TRAHAMKCLTTFSEAVGP-GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF 749 (2015)
Q Consensus 677 ---~~~~~~~~il~~LveK-lgD~K--~r~~a~~~L~~l~e~~~~-~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~f 749 (2015)
+...++..++|.|++| +||.| +|..+.++|..+++...+ ..+++.++.++ ++||||++.+++.||..++.+|
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHh
Confidence 1234577899999999 68865 789999999999997664 56677777764 8999999999999999999999
Q ss_pred CCCCCChhh----HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhH----HhhhhhccHHHHHHHHHHHhcCCCCCC
Q 000156 750 GVSHLKLKD----LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI----KGFLADVKPALLSALDAEYEKNPFEGT 821 (2015)
Q Consensus 750 G~~~l~~k~----li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l----~~~L~~lkp~ll~~Le~ef~k~~~~~~ 821 (2015)
|...++++. +++.+.++ ++|+|++||++|+.++++||+++|+.+ ..|+++++|++++.|+++|+|+.++++
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~~~ 249 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDEPS 249 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC---
T ss_pred CCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCCCC
Confidence 998887665 44456676 999999999999999999999999865 467899999999999999999988766
Q ss_pred CCCccc
Q 000156 822 VVPKKT 827 (2015)
Q Consensus 822 p~p~R~ 827 (2015)
|.+.+.
T Consensus 250 ~~~~~~ 255 (278)
T 4ffb_C 250 SSKMLF 255 (278)
T ss_dssp ----CC
T ss_pred CCCcch
Confidence 665554
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.7e-11 Score=150.83 Aligned_cols=378 Identities=12% Similarity=0.068 Sum_probs=269.5
Q ss_pred HHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc----------
Q 000156 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---------- 674 (2015)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~---------- 674 (2015)
.++.++.+.+-..|.+|-+.|.++-.... ......++..+.. .+.+..|++.+.-++..++...
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--~~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENL--PTFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 45677888899999999999987544211 1133445555542 2346788898888888876421
Q ss_pred --CCCchhHHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhChh----HHHHHHHHHhhhCC--ChhHHHHHHHHHHH
Q 000156 675 --TKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHK--NPKVLSEGILWMVS 744 (2015)
Q Consensus 675 --~~~~~~~~~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~----~Vl~~L~~~l~~~K--npKv~~~~l~~L~~ 744 (2015)
..+.......+-..|++.+.+ .++ ..+..++..++....+. -+++.++..+ .+. ++.++..++.+|..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 223444445566667777766 357 77888898888876553 3666666665 455 89999999999999
Q ss_pred HHHHhCCCCC--ChhhHHHHHHhcCCCCC--chhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000156 745 AVEDFGVSHL--KLKDLIDFCKDTGLQSS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (2015)
Q Consensus 745 li~~fG~~~l--~~k~li~~l~~~gL~~s--n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~ 820 (2015)
+++++....+ ....+++.+..+ +.+. ++.||.+|.++++.+..+++..+.. .. +.
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~-------~~-------~~------ 215 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDK-------ES-------ER------ 215 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS-------HH-------HH------
T ss_pred HHHhCCchhhHhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh-------hH-------HH------
Confidence 9998743222 245677878776 8888 7999999999988764322211100 00 00
Q ss_pred CCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChh-hHHHH
Q 000156 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGG 899 (2015)
Q Consensus 821 ~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~-eL~~~ 899 (2015)
..+.+.+...+.+.++.+|..+++.+..++......+.+. +. .++..
T Consensus 216 -------------------------------~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~ 263 (462)
T 1ibr_B 216 -------------------------------HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAI 263 (462)
T ss_dssp -------------------------------HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHH
T ss_pred -------------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 0012233344567789999999999999998654556555 46 88998
Q ss_pred HHhccccchHHHHHHHHHHHHHHHHHh---------------------ChhhHHhhhHHHHHHHHHhCCC-------cHH
Q 000156 900 LRGRLYDSNKNLVMATLITLGAVASAM---------------------GPAVEKSSKGVLSDILKCLGDN-------KKH 951 (2015)
Q Consensus 900 L~~rL~DsN~~V~~~Al~~l~~La~al---------------------g~~f~~~~~~llp~ll~~L~D~-------k~~ 951 (2015)
+...+.|.+..|+..|+..+..++... ..-+++|+..++|.++..+.+. ...
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888899999999999999999998763 2234567889999999988643 347
Q ss_pred HHHHHHHHHHHHHHhcCchhhHH----HHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCC
Q 000156 952 MRECTLTVLDAWLAAVHLDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDK 1024 (2015)
Q Consensus 952 Vr~aa~~aL~~i~~~~gl~~ll~----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~ 1024 (2015)
+|.+|..+|..++..+| +.+++ .+...|.+. ++..|..++..+......... .+.+..+++.++.+|.|+
T Consensus 344 ~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 45444 455556555 588999999988876654431 234566777799999999
Q ss_pred ChHHHHHHHHHHHHHHHHcChh
Q 000156 1025 SSDVRKAAEACIVEILRAGGQE 1046 (2015)
Q Consensus 1025 ~~~VR~aA~~~L~~l~~~~G~~ 1046 (2015)
++.||.+|..+++.+...+|..
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988863
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.42 E-value=8.2e-11 Score=150.00 Aligned_cols=380 Identities=13% Similarity=0.090 Sum_probs=264.4
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCC--cHHHHHHHHHHHHHHHHHhch---------
Q 000156 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS--NAPVQDKALDALIAYLKAADA--------- 85 (2015)
Q Consensus 17 ~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds--N~~vqe~~leal~~~l~~~~~--------- 85 (2015)
.+.+.+.+-..|.+|-+.|.+ +... +.|.|. ..+...+.++ +..+...|...|-.+++....
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~-~~~~---~~~~~~---~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLER-AAVE---NLPTFL---VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHH-HHHH---HHHHHH---HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHH-HHhh---ChHHHH---HHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 455677888999999999877 4321 123442 3333444443 788999998888888743210
Q ss_pred --hhh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHHH
Q 000156 86 --DAG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQAL 156 (2015)
Q Consensus 86 --~~~-~~~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~L~~~l 156 (2015)
... .....|-..|++.+....+.+ ..+..++-.++..+.+ ..+++.|...+.+. ++.++.+++.+|..+.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 011 122345555666533345566 6666666666655433 36778888888887 8999999999999999
Q ss_pred HHhCCCCcC--hhHHHhhhhhhhcCC--ChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCC
Q 000156 157 SEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTAR 232 (2015)
Q Consensus 157 ~~fG~~~i~--~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~ 232 (2015)
+.+....+. ...+++.+..++.+. +..||.+|...+..+..++++ .. .. .. +.+
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-----~~-~~---~~-------~~~------ 216 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA-----NF-DK---ES-------ERH------ 216 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH-----HH-TS---HH-------HHH------
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-----hh-hh---hH-------HHH------
Confidence 987433322 356889999999998 799999988876665433221 11 00 00 000
Q ss_pred CCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHH
Q 000156 233 PTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312 (2015)
Q Consensus 233 P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l 312 (2015)
| ++ ..+.+.+.+.++..|..+++.|..+
T Consensus 217 ----------------------------------------~-------l~-----~~l~~~~~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 217 ----------------------------------------F-------IM-----QVVCEATQCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp ----------------------------------------H-------HH-----HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----------------------------------------H-------HH-----HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 0 00 0111223455677788999999888
Q ss_pred hc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh---------------------hhcchhhhHhHHH
Q 000156 313 AS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGL---------------------RTHFSGSSRFLLP 369 (2015)
Q Consensus 313 ~~-~~ki~~~~y~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L---------------------~~~f~~~~~~llp 369 (2015)
+. .++.....+. .++..+...+.|.+..|+..|+.++..++... ..-+.+|...++|
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 324 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccH
Confidence 73 4444334455 78888888888999999999999999998764 1123467789999
Q ss_pred HHHHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000156 370 VLLEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (2015)
Q Consensus 370 ~LL~klkd-------kk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (2015)
.+++.+.+ ....+|.++..+|..++.. +..-+..+++.+...+++.+|.+|..++..|..+...+....+..
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 404 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 99998854 3457899999999999886 112234566777778889999999999999998877655444556
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 442 ~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
+++.++|.+..++.|+++.||.+|+.+++.+...++.
T Consensus 405 ~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 7799999999999999999999999999999999886
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-09 Score=141.66 Aligned_cols=479 Identities=13% Similarity=0.161 Sum_probs=298.3
Q ss_pred chhhhHhHHHHHHHHhccCcHHHH-HHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000156 360 FSGSSRFLLPVLLEKLKEKKPTVA-ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (2015)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~-~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (2015)
|..+.+.-+..+-+.|.+.+...+ +++...+. +...| ...+.+++.++..++++++.+|+-+..++..+....+
T Consensus 7 f~~~~~~e~~~i~~~L~~~~~~~k~~~~~kli~-~~~~G-~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~--- 81 (591)
T 2vgl_B 7 FTTNKKGEIFELKAELNNEKKEKRKEAVKKVIA-AMTVG-KDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP--- 81 (591)
T ss_dssp TCCCSSSHHHHHHHHTTSSCHHHHHHHHHHHHH-HHHTT-CCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH---
T ss_pred cccccCChHHHHHHHHcCCCHHHHHHHHHHHHH-HHHCC-CChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc---
Confidence 444444556667777776665444 34444443 33222 4556778888888899999999988888877665422
Q ss_pred HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccC
Q 000156 439 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQT 518 (2015)
Q Consensus 439 l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~ 518 (2015)
..+-.++..+.+.|+|+++.||..|..+++.+ +...+.+
T Consensus 82 --e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i----~~~~~~~----------------------------------- 120 (591)
T 2vgl_B 82 --DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI----RVDKITE----------------------------------- 120 (591)
T ss_dssp --HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC----CSGGGHH-----------------------------------
T ss_pred --hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC----ChHHHHH-----------------------------------
Confidence 12244567888999999999998887666432 1111110
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHh
Q 000156 519 SGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598 (2015)
Q Consensus 519 ~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~ 598 (2015)
T Consensus 121 -------------------------------------------------------------------------------- 120 (591)
T 2vgl_B 121 -------------------------------------------------------------------------------- 120 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC-
Q 000156 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF- 677 (2015)
Q Consensus 599 ~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~- 677 (2015)
.+.+.+...|.|.++..|..|+..+..++....+.... ..++..|.. .+.|.|..|+..++.++..+....+..
T Consensus 121 --~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~--lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 121 --YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-QGFLDSLRD--LIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp --HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHH--TTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred --HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-ccHHHHHHH--HhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 01134556677778888888888888887653332211 123333332 357888888888888888877643321
Q ss_pred chhHHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhC--hhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhC--C
Q 000156 678 PKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG--V 751 (2015)
Q Consensus 678 ~~~~~~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~--~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG--~ 751 (2015)
........+..|+..+.+ +-.+-...++|..++.... ...+++.+... .++.|+.|+.+|+..+..+....+ .
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~-l~~~~~~V~~ea~~~i~~l~~~~~~~~ 274 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPR-LSHANSAVVLSAVKVLMKFLELLPKDS 274 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTC-SCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHhhccCCCH
Confidence 011122334444444332 2233333333332221100 12344444444 368899999999988876543221 1
Q ss_pred CCCC--hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccc
Q 000156 752 SHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (2015)
Q Consensus 752 ~~l~--~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r 829 (2015)
+.+. ...+...+..+ + +++++||..|...++.+.......+..
T Consensus 275 ~~~~~~~~~~~~~L~~L-~-~~d~~vr~~aL~~l~~i~~~~p~~~~~--------------------------------- 319 (591)
T 2vgl_B 275 DYYNMLLKKLAPPLVTL-L-SGEPEVQYVALRNINLIVQKRPEILKQ--------------------------------- 319 (591)
T ss_dssp BSHHHHHHHTHHHHHHH-T-TSCHHHHHHHHHHHHHHHHHCCSTTTT---------------------------------
T ss_pred HHHHHHHHHHHHHHHHH-h-cCCccHHHHHHHHHHHHHHhChHHHHH---------------------------------
Confidence 1111 12233333343 4 588999999999998875432111000
Q ss_pred CccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchH
Q 000156 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909 (2015)
Q Consensus 830 ~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~ 909 (2015)
. +. .|+...+| +|.+|.++++.+..+..+ .....++..|...+.|.+.
T Consensus 320 -------------------~----~~-~~~~~~~d-~~~Ir~~al~~L~~l~~~-------~nv~~iv~~L~~~l~~~d~ 367 (591)
T 2vgl_B 320 -------------------E----IK-VFFVKYND-PIYVKLEKLDIMIRLASQ-------ANIAQVLAELKEYATEVDV 367 (591)
T ss_dssp -------------------C----TT-TTSCCTTS-CHHHHHHHHHHHHHTCCS-------STHHHHHHHHHHHTTSSCH
T ss_pred -------------------H----HH-hheeccCC-hHHHHHHHHHHHHHHCCh-------hhHHHHHHHHHHHHhcCCH
Confidence 0 00 11212233 499999999888776532 2257888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHHHHHHHHhcCCCCh
Q 000156 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVPYVTTALTDAKLGA 987 (2015)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl--~~ll~~l~~~L~~~k~~p 987 (2015)
.++..++..|+.++... .+....+++.++..+.+....|+..+..++..+++..+- ..+++.+...+.+-. .|
T Consensus 368 ~~r~~~v~aI~~la~~~----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~-~~ 442 (591)
T 2vgl_B 368 DFVRKAVRAIGRCAIKV----EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD-EP 442 (591)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC-SH
T ss_pred HHHHHHHHHHHHHHHhC----hhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc-CH
Confidence 99999999999988654 344567788899999999999999999999999887652 456777888886432 47
Q ss_pred hHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000156 988 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~ 1045 (2015)
.+|..++ |+..-+... ..+....+..++..+.+.++.||..+..++..+....+.
T Consensus 443 ~~~~~~~-wilGey~~~--~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 443 DARAAMI-WIVGEYAER--IDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS 497 (591)
T ss_dssp HHHHHHH-HHHHTTCTT--CTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHH-HHHHccccc--ccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch
Confidence 7766554 543322221 123456777788888899999999999999988877654
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-08 Score=134.99 Aligned_cols=493 Identities=13% Similarity=0.147 Sum_probs=312.4
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2015)
++-+.+.+.+=..|++++..+..+. .+. +...++..+.+.+.+.+..+...+..++..+++.- ...+..+
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~-----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~ 87 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGK-----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMA 87 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTC-----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHH
Confidence 4556677888889999999887654 333 23334444556788999999888888888877641 2235667
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000156 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (2015)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (2015)
++.+.+-+.++++.+|..|..+|..+.. ..-.+.+++.+..++.+.+|.||..++..+.++....+. .+.. ..++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~--~~~~ 162 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVED--QGFL 162 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHH--HHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hccc--ccHH
Confidence 7888889999999999877555543321 112345677788999999999999999999998875443 2211 3588
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch--------HHHHHHHhc---cHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000156 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMR--------PLERSIEKL---DDVRRNKLSEMIAGSGGDVATGTSSARV 516 (2015)
Q Consensus 448 p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~--------~~~~~l~~L---d~~~~kkI~e~~~~~~~~~~~~~~~~~~ 516 (2015)
+.+..+|+|.++.||.+|..+|..+...-++. .+..++..| ++-.+-++-+.+...
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l------------- 229 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY------------- 229 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh-------------
Confidence 99999999999999999999998877654321 133333322 222222222222111
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHH
Q 000156 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (2015)
Q Consensus 517 ~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 596 (2015)
.| ..+++...
T Consensus 230 -----------------------------~~-----------------------------------------~~~~~~~~ 239 (591)
T 2vgl_B 230 -----------------------------NP-----------------------------------------KDDREAQS 239 (591)
T ss_dssp -----------------------------CC-----------------------------------------CSHHHHHH
T ss_pred -----------------------------CC-----------------------------------------CChHHHHH
Confidence 00 01122222
Q ss_pred HhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhc--c-ccch-HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHH
Q 000156 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV--Q-NLDQ-SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 672 (2015)
Q Consensus 597 ~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~--~-~~~~-~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~ 672 (2015)
.+ +.+...|.|.++..|.+|+..+..+.... + +... ..+.+...|.. +.+++..|+-.+++.+..++.
T Consensus 240 ~l-----~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~---L~~~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 240 IC-----ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT---LLSGEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp HH-----HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH---HTTSCHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH---HhcCCccHHHHHHHHHHHHHH
Confidence 22 45566788999999999999888664321 1 1111 11112221111 112344578889999999988
Q ss_pred HcCCCchhHHHHHHHHHHhhhcc-hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC
Q 000156 673 TATKFPKKCVVLCLLGISERVAD-IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (2015)
Q Consensus 673 ~~~~~~~~~~~~il~~LveKlgD-~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~ 751 (2015)
..++.....+. .++-...| ..+|..+.++|..++.....+.++.++..++ ...++.++.+++.+|..+...|..
T Consensus 312 ~~p~~~~~~~~----~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l-~~~d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 312 KRPEILKQEIK----VFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYA-TEVDVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HCCSTTTTCTT----TTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred hChHHHHHHHH----hheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhChh
Confidence 76654332221 11222233 3578888888888887766777888888876 567899999999999998876532
Q ss_pred CCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCc
Q 000156 752 SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (2015)
Q Consensus 752 ~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~ 831 (2015)
....+++.+..+ +.+.+..|+..++..+..+.+..... .
T Consensus 387 ---~~~~~v~~Ll~l-l~~~~~~v~~e~i~~l~~ii~~~p~~--------~----------------------------- 425 (591)
T 2vgl_B 387 ---SAERCVSTLLDL-IQTKVNYVVQEAIVVIRDIFRKYPNK--------Y----------------------------- 425 (591)
T ss_dssp ---HHHHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHSCSS--------C-----------------------------
T ss_pred ---HHHHHHHHHHHH-HcccchHHHHHHHHHHHHHHHHCcch--------H-----------------------------
Confidence 234577777777 88888888888877666554322100 0
Q ss_pred cccCCCCCCCCCCCCCcccccccchHHHHhcCC-CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHH
Q 000156 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN 910 (2015)
Q Consensus 832 ~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d-~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~ 910 (2015)
..+...+.+.+.+ .....|..++-.|++.. ..+. + -.+++..|..++.+.+..
T Consensus 426 --------------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~----~~~~-~-~~~~l~~l~~~~~~~~~~ 479 (591)
T 2vgl_B 426 --------------------ESIIATLCENLDSLDEPDARAAMIWIVGEYA----ERID-N-ADELLESFLEGFHDESTQ 479 (591)
T ss_dssp --------------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC----TTCT-T-HHHHHHHHSTTCSSSCHH
T ss_pred --------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHccc----cccc-C-HHHHHHHHHHhhccCCHH
Confidence 0012234444432 34555666655555432 2222 2 367888888888888999
Q ss_pred HHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh-CC-CcHHHHHHHHHHHHH
Q 000156 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GD-NKKHMRECTLTVLDA 962 (2015)
Q Consensus 911 V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L-~D-~k~~Vr~aa~~aL~~ 962 (2015)
|+..++.++..+........ ...+..++..+ .| ....||+-|...+.-
T Consensus 480 vr~~~l~a~~Kl~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 480 VQLTLLTAIVKLFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp HHHHHHHHHHHHHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Confidence 99999999888886543322 24555566654 45 566788887655543
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.1e-09 Score=133.91 Aligned_cols=391 Identities=11% Similarity=0.046 Sum_probs=262.4
Q ss_pred hhhhcCC-----ChhhhhcCCChHHHHHHHHHHHHHhhccCCCC-chHHH--hhhhhhHhhhcCC-cHHHHHHHHHHHHH
Q 000156 8 LKEAKKL-----PWEDRLLHKNWKVRNEANIDLAALCDSITDPK-DNRIR--ELGPLFKKTVADS-NAPVQDKALDALIA 78 (2015)
Q Consensus 8 ~~~~~~l-----pl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~-~~~~~--~~~~~~~k~v~Ds-N~~vqe~~leal~~ 78 (2015)
..+|... ++.+.+.|.+...|..|...|.+.+....++. ...+. ...+.+.+++.+. |+.+|..++.+|..
T Consensus 12 ~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~ 91 (450)
T 2jdq_A 12 NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTN 91 (450)
T ss_dssp ----------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3466655 36788999999999999999999875322221 11121 2345555677777 99999999999988
Q ss_pred HHHHhchhhhhh-HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh--h-----hhHHHHHHHHhhc-CChhhHHHHH
Q 000156 79 YLKAADADAGRY-AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V-----DVFLDVMEKAIKN-KVAKAVVPAI 149 (2015)
Q Consensus 79 ~l~~~~~~~~~~-~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~--~-----~~v~~~L~~~~~~-KnpKv~~~~l 149 (2015)
+........... -..+++.|++-+-...+.+|+.|..++..+.+... . ..+++.|...+.+ .++.++..++
T Consensus 92 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 92 IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 875332211111 13477888776433688999999999888876421 1 2456677777774 7899999999
Q ss_pred HHHHHHHHHhCCC--CcChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhc
Q 000156 150 DVMFQALSEFGAK--IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV 227 (2015)
Q Consensus 150 ~~L~~~l~~fG~~--~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~ 227 (2015)
.+|..+....+.. ..-+..+++.|..++.+.|..||..+...+..+..... . . .+.+
T Consensus 172 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-----~--------~-~~~~------- 230 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN-----D--------K-IQAV------- 230 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH-----H--------H-HHHH-------
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc-----H--------H-HHHH-------
Confidence 9998887543221 11236789999999999999999988766554432110 0 0 0000
Q ss_pred CCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHH
Q 000156 228 SGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVA 307 (2015)
Q Consensus 228 ~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~ 307 (2015)
. . .+ + + +.+...+.+.+|..|..++.
T Consensus 231 --------------~---------~-~~-------------------------~---i--~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 231 --------------I---------D-AG-------------------------V---C--RRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp --------------H---------H-TT-------------------------T---H--HHHHHHTTCSCHHHHHHHHH
T ss_pred --------------H---------H-cC-------------------------c---H--HHHHHHHCCCchhHHHHHHH
Confidence 0 0 00 0 1 23555567788999999999
Q ss_pred HHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh-HhHHHHHHHHhccCcHHHHH
Q 000156 308 ELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAE 384 (2015)
Q Consensus 308 ~L~~l~~~~ki~~~~y--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~llp~LL~klkdkk~~V~~ 384 (2015)
.|..++.+..-....+ ..+++.|...+.+.+..++..|+.+|+.|+.+-........ ..++|.|+..+.+....|+.
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~ 336 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 336 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 9998875321000000 13778888889988999999999999999864333333333 37899999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH------HHHhhhhH-----H
Q 000156 385 SLTQTLQAMHKAGC-LNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA------VLKVHKDY-----V 447 (2015)
Q Consensus 385 aa~~aL~al~~~~~-~~l-----~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~------l~~~l~~l-----~ 447 (2015)
.+..+|..+...+. ... ..+++.|+..++++++.+|..++..|..++...+... ..++...+ +
T Consensus 337 ~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 416 (450)
T 2jdq_A 337 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 416 (450)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcH
Confidence 99999999986411 011 2367888889999999999999999998876543211 11223333 5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 448 p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
+.+..++++.+.+||+.|..++..+.
T Consensus 417 ~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 417 DKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 67788889999999999988887555
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-10 Score=153.47 Aligned_cols=196 Identities=16% Similarity=0.202 Sum_probs=167.3
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh--hhcchhhhHh
Q 000156 290 FWEGVKATKWSERKDAVAELTKLASTKR-IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSRF 366 (2015)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~k-i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L--~~~f~~~~~~ 366 (2015)
.++.+...+=.+|+++...+..++++.- ..... ..++..|++.+.|.+.. ..|+.+++.||+.. ...+++|+-.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 4455555556788999999988775332 22223 37999999999988766 89999999999655 4578999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000156 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (2015)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~K-np~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (2015)
++|.+|+.++||...|++++..|+++++.. +...+..++|.|+.+|++. .|+.|.+++.++..+.... +.++...++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~ 174 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMP 174 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhcc
Confidence 999999999999999999999999999987 3334577899999999865 5999999999999988876 567788899
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhcc
Q 000156 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (2015)
Q Consensus 445 ~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld 489 (2015)
+++|.+..|++|..++|.++|.+++..++.++++++++++++.|-
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~ 219 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLI 219 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHH
Confidence 999999999999999999999999999999999999999998764
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-05 Score=109.58 Aligned_cols=593 Identities=12% Similarity=0.073 Sum_probs=323.2
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcc----hhhhHhHHHH
Q 000156 296 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHF----SGSSRFLLPV 370 (2015)
Q Consensus 296 s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f----~~~~~~llp~ 370 (2015)
+.+=..|++|-+.|..+-+.| ++-.+ +...+. +.+..|+..|+.++....+.--..+ ..+.+..+-.
T Consensus 36 ~~~~~~r~~A~~~L~~~~~~p-----~~~~~---~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~ 107 (963)
T 2x19_B 36 DPNIENKNLAQKWLMQAQVSP-----QAWHF---SWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFT 107 (963)
T ss_dssp CCCHHHHHHHHHHHHHHHHST-----THHHH---HHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCH-----HHHHH---HHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHH
Confidence 466778999999898876654 22222 222343 6678899999999988876432233 2233333333
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHhcC---------
Q 000156 371 LLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKN-----KVPLVRSLTLNWVTFCIETSS--------- 435 (2015)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~-----Knp~vR~~~l~~L~~~l~~~~--------- 435 (2015)
++.......+.|+..+..++..++.+ ......+++++|...+++ .++..+...+.+|..+.+...
T Consensus 108 ~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r 187 (963)
T 2x19_B 108 QITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRK 187 (963)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC-----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHH
Confidence 33333323588999999999999987 223456899999988865 266677788888877664220
Q ss_pred ---hhHHHHhhhhHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhCchHH--HHHHHhcc---------HHHHHHHHHH
Q 000156 436 ---KAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPL--ERSIEKLD---------DVRRNKLSEM 499 (2015)
Q Consensus 436 ---~~~l~~~l~~l~p~l~k~L~Ds~~--~VR~aA~~al~~l~~~~Ge~~~--~~~l~~Ld---------~~~~kkI~e~ 499 (2015)
+..+...++.+++.+..++.+... .++.++.+|+..+.. +|.... .++++.+- ....+-+.+.
T Consensus 188 ~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i 266 (963)
T 2x19_B 188 GLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNA 266 (963)
T ss_dssp ----CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 111234567788888888876543 489999999977665 554211 22222110 0011111111
Q ss_pred HhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCC
Q 000156 500 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTE 579 (2015)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~ 579 (2015)
+.+. .+
T Consensus 267 ~~~~------------------------------------------~~-------------------------------- 272 (963)
T 2x19_B 267 ISQP------------------------------------------DA-------------------------------- 272 (963)
T ss_dssp HTCT------------------------------------------TG--------------------------------
T ss_pred Hccc------------------------------------------cc--------------------------------
Confidence 1100 00
Q ss_pred CCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHh----c-------cccchHHHHHHHHHhc
Q 000156 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA----V-------QNLDQSVEILVRLVCM 648 (2015)
Q Consensus 580 ~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~----~-------~~~~~~~~~Lv~~L~~ 648 (2015)
+ ...-....+-..+..++ +.+...+...+-.....-.+-+..+.+. . +......+.++.+. .
T Consensus 273 -~----~~~~~~~~l~~~~~~~~-~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~-~ 345 (963)
T 2x19_B 273 -Q----RYVNTLLKLIPLVLGLQ-EQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCT-G 345 (963)
T ss_dssp -G----GCHHHHHHHHHHHHTTH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-T
T ss_pred -c----cCHHHHHHHHHHHHhhH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHH-c
Confidence 0 00000001111111110 1111122222221111122222222111 0 00011123333332 3
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHcCCC-----------chhHHHHHHHHHHhhhcc------------h-----hhhH
Q 000156 649 LPGWSEKNVQVQQQVIEVINYLAATATKF-----------PKKCVVLCLLGISERVAD------------I-----KTRA 700 (2015)
Q Consensus 649 ~pg~~DsN~qV~~~~Le~l~~l~~~~~~~-----------~~~~~~~il~~LveKlgD------------~-----K~r~ 700 (2015)
.|+.-+.+..|...++++|..+++....+ ....+..+++.++.++.- . ..|.
T Consensus 346 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~ 425 (963)
T 2x19_B 346 IPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRV 425 (963)
T ss_dssp CSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHH
Confidence 34321222235667788888877632211 123444556666666521 0 1366
Q ss_pred HHHHHHHHHHhhhChhHHHHHHHHHh---h----hCCChhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCc
Q 000156 701 HAMKCLTTFSEAVGPGFIFERLYKIM---K----DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSA 772 (2015)
Q Consensus 701 ~a~~~L~~l~e~~~~~~Vl~~L~~~l---~----~~KnpKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~sn 772 (2015)
.+.++|..++...+. .+++.+++.+ . .+.+|+.+.+++.++..+.+......-+ +..+++.+.. +.+.+
T Consensus 426 ~~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~--l~~~~ 502 (963)
T 2x19_B 426 DISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR--ISISN 502 (963)
T ss_dssp HHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG--SCCCS
T ss_pred HHHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--CCCCc
Confidence 778888888887763 3444443322 2 4578999999999998877654332111 3456665553 55578
Q ss_pred hhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCccccc
Q 000156 773 AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 852 (2015)
Q Consensus 773 ~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~ 852 (2015)
+.||..+..+++.+..+++..- .|+..
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~~-~~l~~---------------------------------------------------- 529 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADHP-VMINS---------------------------------------------------- 529 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCH-HHHTT----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCH-HHHHH----------------------------------------------------
Confidence 9999999999998887665321 12211
Q ss_pred ccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc--cchHHHHHHHHHHHHHHHHHhC-hh
Q 000156 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMG-PA 929 (2015)
Q Consensus 853 ~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~--DsN~~V~~~Al~~l~~La~alg-~~ 929 (2015)
+.+.++..+.+ -++|..|...+..++..+...+.|. +.+++..|...+. +.....+...+++++.++.+++ ..
T Consensus 530 -vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~ 605 (963)
T 2x19_B 530 -VLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE 605 (963)
T ss_dssp -THHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred -HHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 22344444543 4677888999999998776677777 4888888887775 3456788889999999999887 77
Q ss_pred hHHhhhHHHHHHHHHhCC-----CcHHH---HHHHHHHHHHHHHhcCchhhHHHHHHHH--hcCCCChhHHHHHHHHHHH
Q 000156 930 VEKSSKGVLSDILKCLGD-----NKKHM---RECTLTVLDAWLAAVHLDKMVPYVTTAL--TDAKLGAEGRKDLFDWLSK 999 (2015)
Q Consensus 930 f~~~~~~llp~ll~~L~D-----~k~~V---r~aa~~aL~~i~~~~gl~~ll~~l~~~L--~~~k~~p~~R~~~l~~L~~ 999 (2015)
+.+|+..++++++..+.. ..+.. +....+||..+++.++...- ..+.+.- ...+ .+..+..+...+..
T Consensus 606 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 683 (963)
T 2x19_B 606 ILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH-EDDHEGPELRKLP-VPQGPNPVVVVLQQ 683 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC-C----------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc-cccccccccccCC-CCCCCCchHHHHHH
Confidence 889999999999877642 23333 33566777777777652100 0000000 0000 00000111112211
Q ss_pred HhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000156 1000 QLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2015)
Q Consensus 1000 ~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2015)
+.+.+.-++.... .+.+|++.+..++..+...+|.+. .+++
T Consensus 684 ----------~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~-~~~l 724 (963)
T 2x19_B 684 ----------VFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDF-APMV 724 (963)
T ss_dssp ----------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTT-GGGH
T ss_pred ----------HHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhcccc-cccH
Confidence 1222333333332 345889999999999999988653 4445
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.8e-07 Score=123.68 Aligned_cols=701 Identities=11% Similarity=0.079 Sum_probs=373.0
Q ss_pred cCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCCCcCh------hH-HHhhhh
Q 000156 103 LTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAKIIPP------KR-ILKMLP 174 (2015)
Q Consensus 103 l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~-~~KnpKv~~~~l~~L~~~l~~fG~~~i~~------k~-il~~l~ 174 (2015)
+++.+..|..|.+.|..+-+ .++ .+..+...+ .+.++.++..|...|.+.++..- ..++. |. ++..+.
T Consensus 17 ~~~d~~~r~~A~~~L~~~~~--~p~-~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w-~~l~~~~~~~ir~~ll~~l~ 92 (971)
T 2x1g_F 17 YRSNSQNQAITHEWLTDAEA--SPQ-AWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHW-HEVPPENREELKQKILESIV 92 (971)
T ss_dssp HTSTTTC----CHHHHHTTT--STH-HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCG-GGCCGGGHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHc--CHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccH-hhCCHHHHHHHHHHHHHHHH
Confidence 34456677788777765432 232 222222222 35788999999999999887532 23432 22 444444
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCC
Q 000156 175 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDV 254 (2015)
Q Consensus 175 ~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~ 254 (2015)
..- ...+.||.....++++|.++..+ .- .++ +.+|-..+..-. .|.
T Consensus 93 ~~~-~~~~~vr~kl~~~la~i~~~~~p-~W-----p~~----l~~l~~~~~~~~---~~~-------------------- 138 (971)
T 2x1g_F 93 RFA-GGPKIVLNRLCISLGAYIVHMLG-EW-----PGA----IEEVINTFQNQR---MPN-------------------- 138 (971)
T ss_dssp HHT-TSCHHHHHHHHHHHHHHHHHTTC-C---------------HHHHHHHHTC--------------------------
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHHccc-cc-----cHH----HHHHHHHHhccc---ccc--------------------
Confidence 443 23689999999999999887664 11 111 122222221100 000
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 000156 255 GPGPSEESTADVPPEID-EYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKL 333 (2015)
Q Consensus 255 ~~~~~~~~~~~~~~~iD-~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~ 333 (2015)
++ +-...-...|+..++ ++.+... .. .|+..+. ..+. .....++..+...
T Consensus 139 ---------------~~~~~~~~~~l~iL~~l~-EEi~~~~-~~---~~r~~~~---~~l~------~~~~~vl~ll~~~ 189 (971)
T 2x1g_F 139 ---------------VSADVQLWIMLEVLTAIP-EEAQVIH-TS---VKRVVLR---AEIA------KRVQLVIHTVERY 189 (971)
T ss_dssp ----------------CHHHHHHHHHHHHHHHH-HHHHHCC-CS---SCHHHHH---HHHH------TTHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHhH-HHHhccC-cH---HHHHHHH---HHHH------HHHHHHHHHHHHH
Confidence 00 000000123344443 2322111 11 2332222 1111 1245666666666
Q ss_pred hccc--C------HHHHHHHHHHHHHHHH--HhhhcchhhhHhHHHHHHHHhc----------------cCcHHHHHHHH
Q 000156 334 ITDV--N------IAVAVEAIQAIGNLAR--GLRTHFSGSSRFLLPVLLEKLK----------------EKKPTVAESLT 387 (2015)
Q Consensus 334 l~D~--N------~~V~~~A~~~l~~La~--~L~~~f~~~~~~llp~LL~klk----------------dkk~~V~~aa~ 387 (2015)
+.+. + ..+...+++|+..... .+... ....+++.++. +. +..+.+++++.
T Consensus 190 l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 265 (971)
T 2x1g_F 190 LKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCL 265 (971)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHH
T ss_pred HhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHH
Confidence 6522 1 2688889999998777 34333 44667777777 51 24678999999
Q ss_pred HHHHHHHHhcC-----CChHhHHHHHHH-------HhhcCCh---HHHHHHHHHHHHHHHhcChhH----------HHHh
Q 000156 388 QTLQAMHKAGC-----LNLVDVVEDVKT-------SVKNKVP---LVRSLTLNWVTFCIETSSKAA----------VLKV 442 (2015)
Q Consensus 388 ~aL~al~~~~~-----~~l~~il~~l~~-------~L~~Knp---~vR~~~l~~L~~~l~~~~~~~----------l~~~ 442 (2015)
+|+..++.... ..+..+++.+.. ++.++.. ......+.++..+.+.+.... ....
T Consensus 266 ~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (971)
T 2x1g_F 266 KTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSIL 345 (971)
T ss_dssp HHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHH
Confidence 99999987411 012334444433 2233342 566667777777665443211 1245
Q ss_pred hhhHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHH-HhCc------h----HHHHHHHhccHHHHHHHHHHHhcCCCC
Q 000156 443 HKDYVPICMECLND-----GTPEVRDAAFSVLAAIAK-SVGM------R----PLERSIEKLDDVRRNKLSEMIAGSGGD 506 (2015)
Q Consensus 443 l~~l~p~l~k~L~D-----s~~~VR~aA~~al~~l~~-~~Ge------~----~~~~~l~~Ld~~~~kkI~e~~~~~~~~ 506 (2015)
+..+++.+..++.. .+.+|+..+.+....+.. .... . .+.+++..| +..++.+..-
T Consensus 346 l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-------l~~l~~~~~~- 417 (971)
T 2x1g_F 346 VHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHL-------TRILVRKSEQ- 417 (971)
T ss_dssp HHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH-------HHHHHHHTSC-
T ss_pred HHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH-------HHHHHHHhcC-
Confidence 67788888887743 578899999888777766 3220 1 122222222 2222222100
Q ss_pred CCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC
Q 000156 507 VATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP 586 (2015)
Q Consensus 507 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~ 586 (2015)
|.. . +.
T Consensus 418 -----p~~-----------~--------------------------------------------------------~~-- 423 (971)
T 2x1g_F 418 -----PDE-----------K--------------------------------------------------------SL-- 423 (971)
T ss_dssp -----CCT-----------T--------------------------------------------------------TT--
T ss_pred -----CCc-----------c--------------------------------------------------------cc--
Confidence 000 0 00
Q ss_pred CCCCHHH-------------HHHHhhccCc--------HHHHhhhcc-----CCHHHHHHHHHHHHHHHHhccc-cchHH
Q 000156 587 SEMSLEE-------------IESRLGSLIP--------ADTVGQLKS-----AVWKERLEAISSLRQQVEAVQN-LDQSV 639 (2015)
Q Consensus 587 ~~~s~ee-------------~e~~~~~ll~--------~~l~~~L~s-----~~Wk~Rl~a~e~L~~~v~~~~~-~~~~~ 639 (2015)
...+.+| +-..+..+++ +-+...|.+ .+|+.|.+++-.+..+.++... .....
T Consensus 424 ~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l 503 (971)
T 2x1g_F 424 AKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQI 503 (971)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHH
T ss_pred cccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 0000110 0000111222 122233333 7999999999999987665322 11233
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHH
Q 000156 640 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIF 719 (2015)
Q Consensus 640 ~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl 719 (2015)
..++..+...+. .|.+..|...++.++..+.+-..... ..+..+++.|+..+ |++++..|..++..+++.++..
T Consensus 504 ~~l~~~l~~l~~-~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~~~v~~~A~~al~~l~~~~~~~--- 577 (971)
T 2x1g_F 504 PRLMRVLAEIPY-EKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-NSSMSAQATLGLKELCRDCQLQ--- 577 (971)
T ss_dssp HHHHHHHHHSCT-TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHHHHHhcCc-cccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHh---
Confidence 444554432211 25688899999998888877554322 45666677777666 4667777777777777654321
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCC--CchhHHHHHHHHHHHHHHHhC-hhHHh
Q 000156 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDIKG 796 (2015)
Q Consensus 720 ~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~--sn~~VR~aA~~ll~~Ly~~~G-~~l~~ 796 (2015)
+.+++ ..++..+..+ +.. .+..+|..+.++++.+...++ ....+
T Consensus 578 --l~p~~------------------------------~~ll~~l~~~-l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 578 --LKPYA------------------------------DPLLNACHAS-LNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp --HHHHH------------------------------HHHHHHHHHH-HHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred --ccccH------------------------------HHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 11111 1222222222 332 345788888999999887766 44666
Q ss_pred hhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHH
Q 000156 797 FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEA 876 (2015)
Q Consensus 797 ~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~ 876 (2015)
++..+-+.+++.++.-.+.... .++ +-....++++.
T Consensus 625 ~~~~ll~~l~~~l~~~~~~~~~------------------------------------~~~--------~~~~~~~~l~~ 660 (971)
T 2x1g_F 625 YLDIIVSPCFEELQAICQADSK------------------------------------TPA--------ARIRTIFRLNM 660 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------------------------------------CHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCC------------------------------------Chh--------hHHHHHHHHHH
Confidence 7766666666655543211000 000 00112234555
Q ss_pred HHHHHHhccccCC--------CC----ChhhHHHHHHhccccc--hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHH
Q 000156 877 VNKILEEANKRIQ--------PA----GTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (2015)
Q Consensus 877 L~~ll~~a~~~I~--------~~----~~~eL~~~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll 942 (2015)
|..++......+. +. ...++++.+...+.+. +..|...++.+++.++..+|..|.+|+..+++.++
T Consensus 661 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~ 740 (971)
T 2x1g_F 661 ISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIV 740 (971)
T ss_dssp HHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 5555543211111 11 1356777777666443 55899999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHhcCch--------hhHHHH----HHHHhcC-----CCChhHHHHHHHHHHHHhccCC
Q 000156 943 KCLGDNKKHMRECTLTVLDAWLAAVHLD--------KMVPYV----TTALTDA-----KLGAEGRKDLFDWLSKQLTGLS 1005 (2015)
Q Consensus 943 ~~L~D~k~~Vr~aa~~aL~~i~~~~gl~--------~ll~~l----~~~L~~~-----k~~p~~R~~~l~~L~~~l~~~~ 1005 (2015)
..+..... ..+...+..++...|-+ .++..+ ...|... ...|+++.+.+.++...+...+
T Consensus 741 ~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p 817 (971)
T 2x1g_F 741 ASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIP 817 (971)
T ss_dssp HHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSG
T ss_pred HHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCc
Confidence 88876432 34778888888877753 222221 1222211 1148899999999998887654
Q ss_pred C----CCC-hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1006 G----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1006 ~----~~~-~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
. .+. +..++...+.+|.-.+.++.+++..++..++..
T Consensus 818 ~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 818 QVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp GGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 3 233 555666666777666666777787777776655
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8.5e-09 Score=134.57 Aligned_cols=382 Identities=10% Similarity=0.057 Sum_probs=262.5
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHH--hhhhhhHhhhcCC-cHHHHHHHHHHHHHHHHHhchhhhhhH-
Q 000156 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR--ELGPLFKKTVADS-NAPVQDKALDALIAYLKAADADAGRYA- 91 (2015)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~--~~~~~~~k~v~Ds-N~~vqe~~leal~~~l~~~~~~~~~~~- 91 (2015)
+.+.|.+.+|..|..|...|.+.+....++.-..+. ...+.+..++.+. |+.+|..++.+|..+...... ....+
T Consensus 92 lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~ 170 (530)
T 1wa5_B 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVV 170 (530)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 467788999999999999999987643222111121 2345566778886 999999999998877653211 11111
Q ss_pred -HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh--hh-----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC
Q 000156 92 -KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE--AV-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI 163 (2015)
Q Consensus 92 -~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~--~~-----~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~ 163 (2015)
...++.|+.-.-...+.+|+.|..++..++... .. ..+++.|...+.+.++.++..++.+|..+....+...
T Consensus 171 ~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 245667766533368899999999988887541 11 2456777888888899999999999988775432221
Q ss_pred --cChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhh
Q 000156 164 --IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241 (2015)
Q Consensus 164 --i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~ 241 (2015)
.-...+++.|..++.+.|..||..|..++..|.....+ ..+.+ ++
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~--------------~~~~~---~~---------------- 297 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE--------------AIQAV---ID---------------- 297 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH--------------HHHHH---HH----------------
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH--------------HHHHH---Hh----------------
Confidence 12356899999999999999999988777665522100 00000 00
Q ss_pred hHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCC
Q 000156 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 321 (2015)
Q Consensus 242 ~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~ 321 (2015)
. .+ + +.+...+.+.+|..|..|+..|..++.+..-...
T Consensus 298 ------------~-------------------------~~---v--~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 335 (530)
T 1wa5_B 298 ------------V-------------------------RI---P--KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335 (530)
T ss_dssp ------------T-------------------------TC---H--HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ------------c-------------------------Cc---H--HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHH
Confidence 0 00 1 2355556778899999999999988743210000
Q ss_pred C-h-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh-HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC
Q 000156 322 D-F-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (2015)
Q Consensus 322 ~-y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~ 398 (2015)
. + ..+++.|...+.+.+..++..|+.+|+.|+.+-......++ ..++|.|+..+.+....|+..+..+|..++..+.
T Consensus 336 ~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 415 (530)
T 1wa5_B 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL 415 (530)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 0 0 14677888889988999999999999999865333333332 3688999999999999999999999999987521
Q ss_pred C---Ch-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---------HHHHhh--hhHHHHHHHHhcCCCH
Q 000156 399 L---NL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---------AVLKVH--KDYVPICMECLNDGTP 459 (2015)
Q Consensus 399 ~---~l-----~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~---------~l~~~l--~~l~p~l~k~L~Ds~~ 459 (2015)
. .. ..+++.|+..+.+.++.++..++..|..++...... .+...+ ...++.|..+++|.++
T Consensus 416 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~ 495 (530)
T 1wa5_B 416 QRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEND 495 (530)
T ss_dssp TCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCH
T ss_pred CcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCH
Confidence 1 00 136788888899999999999999999988754321 111111 1247788888999999
Q ss_pred HHHHHHHHHHHHHH
Q 000156 460 EVRDAAFSVLAAIA 473 (2015)
Q Consensus 460 ~VR~aA~~al~~l~ 473 (2015)
+|++.|..++..++
T Consensus 496 ~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 496 KIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHC
Confidence 99998888776554
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4.2e-09 Score=133.82 Aligned_cols=377 Identities=12% Similarity=0.083 Sum_probs=252.0
Q ss_pred cHHHHhhhccCCHHHHHHHHHHHHHHHHh-cc-ccc------hHHHHHHHHHhcCCCCccc-HHHHHHHHHHHHHHHHHH
Q 000156 603 PADTVGQLKSAVWKERLEAISSLRQQVEA-VQ-NLD------QSVEILVRLVCMLPGWSEK-NVQVQQQVIEVINYLAAT 673 (2015)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~-~~-~~~------~~~~~Lv~~L~~~pg~~Ds-N~qV~~~~Le~l~~l~~~ 673 (2015)
-+.+++.|.+.+...|..|+..|..++.. .. ... .....+++.| ++. +..|+..++.+|..++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L------~~~~~~~v~~~a~~~L~~l~~~ 95 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFL------KRKENCTLQFESAWVLTNIASG 95 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHH------TCTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHH------CCCCCHHHHHHHHHHHHHHhcC
Confidence 36788899999999999999999998753 11 111 1234455554 333 778889999999888752
Q ss_pred cCCCchhHH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHhhhCCChhHHHHHHHHHH
Q 000156 674 ATKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNPKVLSEGILWMV 743 (2015)
Q Consensus 674 ~~~~~~~~~-~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~-------~~Vl~~L~~~l~~~KnpKv~~~~l~~L~ 743 (2015)
........+ ..++|.|+.-+.+ ..+|..|..+|..++..... .-+++.++..+....++.++..++..|.
T Consensus 96 ~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 96 NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175 (450)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 111111111 2467888877765 57899999999998864311 1235566666543578999999999999
Q ss_pred HHHHHhCCC--CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCC
Q 000156 744 SAVEDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT 821 (2015)
Q Consensus 744 ~li~~fG~~--~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~ 821 (2015)
.+....+.. ..-+..+++.+..+ +.+.++.||..|..++..|.....+ ....+. +
T Consensus 176 ~l~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~------------~~~~~~----~------ 232 (450)
T 2jdq_A 176 NLCRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPND------------KIQAVI----D------ 232 (450)
T ss_dssp HHHCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSHH------------HHHHHH----H------
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCcH------------HHHHHH----H------
Confidence 888543111 11135678888888 9999999999999988877532110 000000 0
Q ss_pred CCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHH
Q 000156 822 VVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (2015)
Q Consensus 822 p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~ 901 (2015)
..+.+.++..+.+.+|.+|..++..|..+..........-.-..+++.|.
T Consensus 233 ------------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 282 (450)
T 2jdq_A 233 ------------------------------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLL 282 (450)
T ss_dssp ------------------------------TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred ------------------------------cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHH
Confidence 00335677888889999999999999988753111000000024788888
Q ss_pred hccccchHHHHHHHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhh
Q 000156 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKM 972 (2015)
Q Consensus 902 ~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl--------~~l 972 (2015)
..+.+.+..++..|+.+++.|+........... ..++|.++..|.+....||..|..+|..++..... ..+
T Consensus 283 ~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~ 362 (450)
T 2jdq_A 283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362 (450)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence 999999999999999999998853322233333 36899999999999999999999999999875321 246
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC--------CCChhhhH------HHHHhhcCCCChHHHHHHHHHHHH
Q 000156 973 VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAHLL------KPASIAMTDKSSDVRKAAEACIVE 1038 (2015)
Q Consensus 973 l~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--------~~~~~~ll------~pl~~~L~D~~~~VR~aA~~~L~~ 1038 (2015)
++.+...|.++ ++.+|..++..|...+..... ...+...+ ..+...+.+.+.+||+.|..++..
T Consensus 363 i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 440 (450)
T 2jdq_A 363 IKPLCDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440 (450)
T ss_dssp HHHHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 77888888765 578888877777654432110 01111222 235556688888999998887776
Q ss_pred HH
Q 000156 1039 IL 1040 (2015)
Q Consensus 1039 l~ 1040 (2015)
+.
T Consensus 441 ~~ 442 (450)
T 2jdq_A 441 YF 442 (450)
T ss_dssp HH
T ss_pred HC
Confidence 54
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-05 Score=108.03 Aligned_cols=354 Identities=13% Similarity=0.128 Sum_probs=202.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 000156 611 KSAVWKERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGI 689 (2015)
Q Consensus 611 ~s~~Wk~Rl~a~e~L~~~v~~~~~-~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~L 689 (2015)
.+.+|+.|.+++-.++.+.++... .......++..+ +++.+.+..|...++.++..+.+.... ....+..+++.|
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l---~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~~l 534 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI---PRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLPLV 534 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG---GGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence 346899999999999987766332 222334444444 245556777888777777765543211 012333344444
Q ss_pred HhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCC
Q 000156 690 SERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGL 768 (2015)
Q Consensus 690 veKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL 768 (2015)
+..+.+ |+|+..++..|..+++..+..-.+ +..++..+..+ +
T Consensus 535 ~~~l~~------------------------------------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~-l 577 (963)
T 2x19_B 535 LHALGN------------------------------------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV-L 577 (963)
T ss_dssp HHHTTC------------------------------------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH-H
T ss_pred HHHhCC------------------------------------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-h
Confidence 444444 445555555555554443321111 33455444443 4
Q ss_pred CC--CchhHHHHHHHHHHHHHHHhC-hhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000156 769 QS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2015)
Q Consensus 769 ~~--sn~~VR~aA~~ll~~Ly~~~G-~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2015)
.. .+..+|....++++.+...+| ....+|+..+-+.+...++.-.... .
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-----~----------------------- 629 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI-----P----------------------- 629 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC-----S-----------------------
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC-----C-----------------------
Confidence 32 356788888888888887776 5566777666665555554432100 0
Q ss_pred CCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCC-----------------CC----ChhhHHHHHHhcc
Q 000156 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ-----------------PA----GTGELFGGLRGRL 904 (2015)
Q Consensus 846 prvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~-----------------~~----~~~eL~~~L~~rL 904 (2015)
.++. -+.+...++.|..++........ +. .+..+++.+...+
T Consensus 630 ---------~~~~--------~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 692 (963)
T 2x19_B 630 ---------NPSN--------KLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL 692 (963)
T ss_dssp ---------CHHH--------HHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CHHH--------HHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 0000 01122334444444432211110 00 1234444444444
Q ss_pred cc--chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhH----H
Q 000156 905 YD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMV----P 974 (2015)
Q Consensus 905 ~D--sN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~----~ll----~ 974 (2015)
.. .+..+...++.+++.++..+|..|.+|+..+++.++..+..... ......+..++...+.+ ..+ .
T Consensus 693 ~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~ 769 (963)
T 2x19_B 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFL 769 (963)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHH
T ss_pred HhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 21 24578999999999999999999999999999988887754221 23455666676633322 122 2
Q ss_pred HHH----HHHh-cCCCChhHHHHHHHHHHHHhccCCC----CCC-hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000156 975 YVT----TALT-DAKLGAEGRKDLFDWLSKQLTGLSG----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2015)
Q Consensus 975 ~l~----~~L~-~~k~~p~~R~~~l~~L~~~l~~~~~----~~~-~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G 1044 (2015)
.+. ..+. +....|++|...+..+...+...+. .+. +..++..+..+|.+.+.+|-+++...+..+....+
T Consensus 770 ~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 770 LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 222 2222 2111489999999999888876543 233 56666678888999999999999999998887765
Q ss_pred -hhHHHHHhc
Q 000156 1045 -QETIEKNLK 1053 (2015)
Q Consensus 1045 -~~~~~~~l~ 1053 (2015)
...+..++.
T Consensus 850 ~~~~~~~~~~ 859 (963)
T 2x19_B 850 EVESVGKVVQ 859 (963)
T ss_dssp SSCHHHHHTT
T ss_pred ChHHHHHHHH
Confidence 334444443
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-05 Score=111.92 Aligned_cols=603 Identities=11% Similarity=0.065 Sum_probs=306.2
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcch----hhhH-hHHHH
Q 000156 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS----GSSR-FLLPV 370 (2015)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~----~~~~-~llp~ 370 (2015)
.+=..|++|-+.|..+-+.| +....+..++. +.+..|+..|+.++....+.--..+. .+.+ .++..
T Consensus 19 ~d~~~r~~A~~~L~~~~~~p--------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~ 90 (971)
T 2x1g_F 19 SNSQNQAITHEWLTDAEASP--------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILES 90 (971)
T ss_dssp STTTC----CHHHHHTTTST--------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCH--------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHH
Confidence 44456888878787764433 22223344444 66788999999999988764333332 2333 33444
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCC-ChHhHHHHHHHHhhcC------ChHHHHHHHHHHHHHHHh---cC-----
Q 000156 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCL-NLVDVVEDVKTSVKNK------VPLVRSLTLNWVTFCIET---SS----- 435 (2015)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~~~~-~l~~il~~l~~~L~~K------np~vR~~~l~~L~~~l~~---~~----- 435 (2015)
+.... ...+.|+..+..++..++.+ .. ....+++++...+++. ++..+...+.+|..+.+. ..
T Consensus 91 l~~~~-~~~~~vr~kl~~~la~i~~~-~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r 168 (971)
T 2x1g_F 91 IVRFA-GGPKIVLNRLCISLGAYIVH-MLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKR 168 (971)
T ss_dssp HHHHT-TSCHHHHHHHHHHHHHHHHH-TTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHHHHH-ccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHH
Confidence 43333 23478999999999999988 33 6778999999888765 677888888888866542 11
Q ss_pred ---hhHHHHhhhhHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHH--hCchHHHHHHHhccHHHHHHHH-HHHh
Q 000156 436 ---KAAVLKVHKDYVPICMECLNDGT--------PEVRDAAFSVLAAIAKS--VGMRPLERSIEKLDDVRRNKLS-EMIA 501 (2015)
Q Consensus 436 ---~~~l~~~l~~l~p~l~k~L~Ds~--------~~VR~aA~~al~~l~~~--~Ge~~~~~~l~~Ld~~~~kkI~-e~~~ 501 (2015)
+..+...++.+++.+..++.+.. .+++.++.+|+..+... ++.....++++.+- . |. .++.
T Consensus 169 ~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~----~-L~~~~~~ 243 (971)
T 2x1g_F 169 VVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLL----E-VVHKCYW 243 (971)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH----H-HHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHH----h-hhhhhcc
Confidence 12233445677777777775432 27999999999988875 33221112221110 0 00 0000
Q ss_pred cCCCCCCCCCCCccccCCCCCCCCCCCCccccccccccc----ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCC
Q 000156 502 GSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS----MLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKL 577 (2015)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s----~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~ 577 (2015)
...+.. .+. .... .+..+..+.. .... +.
T Consensus 244 ~~~~~~-~~~-----------~~~~----~~~~~~~a~~~l~~i~~~--~~----------------------------- 276 (971)
T 2x1g_F 244 PCIHAG-DGC-----------MTAD----ENELAESCLKTMVNIIIQ--PD----------------------------- 276 (971)
T ss_dssp SSCC----CC-----------CCHH----HHHHHHHHHHHHHHHHHC--SG-----------------------------
T ss_pred cccccc-ccc-----------cCcC----CcHHHHHHHHHHHHHHcC--cc-----------------------------
Confidence 000000 000 0000 0000000000 0000 00
Q ss_pred CCCCCCCCCCCCCHHHHHHHhhccC--cHHHHhhhccCC----HHHHHHHHHHHHHHHHhc----------------ccc
Q 000156 578 TEAPEDVEPSEMSLEEIESRLGSLI--PADTVGQLKSAV----WKERLEAISSLRQQVEAV----------------QNL 635 (2015)
Q Consensus 578 ~~~~~~~~~~~~s~ee~e~~~~~ll--~~~l~~~L~s~~----Wk~Rl~a~e~L~~~v~~~----------------~~~ 635 (2015)
. . + ...-+...+..++ ...+...+.+.+ |..+ ...+-+..+.+.. +..
T Consensus 277 --~-~---~---~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 346 (971)
T 2x1g_F 277 --C-H---N---YPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIV-HIYMLFVSSVERHSTLLLSGITSADPELSILV 346 (971)
T ss_dssp --G-G---G---CHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHH-HHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH
T ss_pred --c-c---c---cHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHH-HHHHHHHHHHHHHHHHHHHHhccCcccccHHH
Confidence 0 0 0 0000000000000 011111222223 3222 1122222222110 000
Q ss_pred chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--------C----CchhHHHHHHHHHHhhhc---------
Q 000156 636 DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--------K----FPKKCVVLCLLGISERVA--------- 694 (2015)
Q Consensus 636 ~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~--------~----~~~~~~~~il~~LveKlg--------- 694 (2015)
....+.++.+. ..||+...+..|...++++|..+++... . .....+..+++.++.++.
T Consensus 347 ~~~l~~ll~~~-~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~ 425 (971)
T 2x1g_F 347 HRIVQEILHCT-DKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAK 425 (971)
T ss_dssp HHHHHHHHHHH-HCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSC
T ss_pred HHHHHHHHHHH-cCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 01123333332 2466655556688899999988876321 1 113455667777887762
Q ss_pred -c-------hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhh---h-----CCChhHHHHHHHHHHHHHHHhCCCC-CChh
Q 000156 695 -D-------IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK---D-----HKNPKVLSEGILWMVSAVEDFGVSH-LKLK 757 (2015)
Q Consensus 695 -D-------~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~---~-----~KnpKv~~~~l~~L~~li~~fG~~~-l~~k 757 (2015)
| ...|..+.++|..++...+ +.+++.+++.+. . ..+|+.+.+++..+..+.+...... -.+.
T Consensus 426 ~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~ 504 (971)
T 2x1g_F 426 WSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP 504 (971)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 1 0246778889999888776 455555554331 2 2789999999999888765433221 1245
Q ss_pred hHHHHHHhcCC-CCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCC
Q 000156 758 DLIDFCKDTGL-QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (2015)
Q Consensus 758 ~li~~l~~~gL-~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s 836 (2015)
.+++.+..+ . .+.++.||..|..+++.+..+++... .|+..+-|.++..+
T Consensus 505 ~l~~~l~~l-~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l--------------------------- 555 (971)
T 2x1g_F 505 RLMRVLAEI-PYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL--------------------------- 555 (971)
T ss_dssp HHHHHHHHS-CTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHhc-CccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh---------------------------
Confidence 566655543 3 24689999999999999998887532 34444334333333
Q ss_pred CCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc--chHHHHHH
Q 000156 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMA 914 (2015)
Q Consensus 837 ~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~D--sN~~V~~~ 914 (2015)
| .+++..|...+..+++++...+.|. +..|+..|...+.. ........
T Consensus 556 ---------------------------~--~~v~~~A~~al~~l~~~~~~~l~p~-~~~ll~~l~~~l~~~~~~~~~~~~ 605 (971)
T 2x1g_F 556 ---------------------------N--SSMSAQATLGLKELCRDCQLQLKPY-ADPLLNACHASLNTGRMKNSDSVR 605 (971)
T ss_dssp ---------------------------H--SSCHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHSTTSCHHHHHH
T ss_pred ---------------------------C--hHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHcCCCCChHHHHH
Confidence 1 2234556667777776655555555 47788888777754 45678888
Q ss_pred HHHHHHHHHHHhC-hhhHHhhhHHHHHHHHHhC----CC--cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCCh
Q 000156 915 TLITLGAVASAMG-PAVEKSSKGVLSDILKCLG----DN--KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGA 987 (2015)
Q Consensus 915 Al~~l~~La~alg-~~f~~~~~~llp~ll~~L~----D~--k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p 987 (2015)
.+++++.++.+++ ..+.+|+..++++++..+. .. ...-+.....+++.+.. +...+... ..+
T Consensus 606 ~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~----------~~~~l~~~-~~~ 674 (971)
T 2x1g_F 606 LMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST----------LFSSLNTD-VDE 674 (971)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH----------HHHHHTC-----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------HHhhcCCC-cCc
Confidence 9999999998876 6677888888888877654 21 22233334444443321 11112110 000
Q ss_pred hHHHHH--HHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000156 988 EGRKDL--FDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2015)
Q Consensus 988 ~~R~~~--l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2015)
.+.+. -.-+..++ ..+.+++.-++.... .+.+|.+.+..++..+...+|.+ +.+++
T Consensus 675 -~~~~~~~~~~~~~~~------~~i~~~l~~~l~~~~-~~~~v~e~~~~~~~~~~~~~~~~-~~p~l 732 (971)
T 2x1g_F 675 -QATDQPIVQPVLLVM------QRTMPIFKRIAEMWV-EEIDVLEAACSAMKHAITNLRSS-FQPML 732 (971)
T ss_dssp ----------CCHHHH------HTTHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHC---CTHH
T ss_pred -ccccccCCCchHHHH------HHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhhhhh-ccccH
Confidence 00000 00000001 123334444444332 46789999999999999988876 45553
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.3e-07 Score=119.01 Aligned_cols=462 Identities=11% Similarity=0.034 Sum_probs=261.7
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 399 ~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
......+.+++..+.+++...|+-...++..++... + ..+-.++..+.+-|.|+++.||..|..+|+.+. .
T Consensus 66 ~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~----e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~ 136 (618)
T 1w63_A 66 YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDER-Q----DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG----S 136 (618)
T ss_dssp CCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-H----HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----C
T ss_pred CCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-c----HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----C
Confidence 345667788888888999999988777766655432 1 123457788999999999999999988887653 2
Q ss_pred hHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCC
Q 000156 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (2015)
Q Consensus 479 ~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~ 558 (2015)
..+ ++.+
T Consensus 137 ~~~---~~~l---------------------------------------------------------------------- 143 (618)
T 1w63_A 137 SEM---CRDL---------------------------------------------------------------------- 143 (618)
T ss_dssp HHH---HHHH----------------------------------------------------------------------
T ss_pred HHH---HHHH----------------------------------------------------------------------
Confidence 211 1100
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchH
Q 000156 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS 638 (2015)
Q Consensus 559 ~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~ 638 (2015)
.+.+...|.|.+.-.|..|+..+..++....+..
T Consensus 144 --------------------------------------------~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-- 177 (618)
T 1w63_A 144 --------------------------------------------AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-- 177 (618)
T ss_dssp --------------------------------------------HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--
T ss_pred --------------------------------------------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--
Confidence 0233344555666667777777776665432211
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhc-----------------chhhhHH
Q 000156 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA-----------------DIKTRAH 701 (2015)
Q Consensus 639 ~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg-----------------D~K~r~~ 701 (2015)
+.++..+. ..+.|.|..|+..++.++..+....++. ...+..++|.++..+. ++-.+..
T Consensus 178 -~~~~~~l~--~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 -EMFLPATK--NLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp -GGGGGGTT--TSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred -HHHHHHHH--HHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 11111111 2456777777777777776655321110 0122334444444332 2334445
Q ss_pred HHHHHHHHHhhhChh------HHHHHHHHHhh--hCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCch
Q 000156 702 AMKCLTTFSEAVGPG------FIFERLYKIMK--DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773 (2015)
Q Consensus 702 a~~~L~~l~e~~~~~------~Vl~~L~~~l~--~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~ 773 (2015)
..++|..++... ++ -++..++.... .+.++-|..+++..+..+ +...--....+..+..+ +.+.++
T Consensus 254 il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~~~~l~~~a~~~L~~~-L~~~d~ 327 (618)
T 1w63_A 254 ILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KSESGLRVLAINILGRF-LLNNDK 327 (618)
T ss_dssp HHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHH-HTCSST
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHH-HhCCCC
Confidence 555555555421 11 13333333211 233456777777766542 22110012245556666 788999
Q ss_pred hHHHHHHHHHHHHHHHhChhHHhhh-------hhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCC
Q 000156 774 ATRNATIKLLGALHKFVGPDIKGFL-------ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (2015)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L-------~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lp 846 (2015)
+||..|...++.+....+..+..++ .+-.+.+...--+-+-++..
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~---------------------------- 379 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVN---------------------------- 379 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC----------------------------
T ss_pred chHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc----------------------------
Confidence 9999999999988765443333222 11111111100001111110
Q ss_pred CcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHh
Q 000156 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM 926 (2015)
Q Consensus 847 rvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~al 926 (2015)
...+ ..+..+++.-+.+.+-..|.+++..+..++. +..+. +...+..|...|.+.+..+...++..+..+...
T Consensus 380 ~~nv-~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~----k~~~~-~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~- 452 (618)
T 1w63_A 380 GNNI-RGMMKELLYFLDSCEPEFKADCASGIFLAAE----KYAPS-KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN- 452 (618)
T ss_dssp SSST-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----SSCCC-HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH-
T ss_pred cccH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HhCcc-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc-
Confidence 0001 1244567777777788889999999988875 22233 466778888888777777777777777777654
Q ss_pred ChhhHHhhhHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHhcC-------------chhhHHHHHHHHhcCCCChhHHH
Q 000156 927 GPAVEKSSKGVLSDILKCLGD--NKKHMRECTLTVLDAWLAAVH-------------LDKMVPYVTTALTDAKLGAEGRK 991 (2015)
Q Consensus 927 g~~f~~~~~~llp~ll~~L~D--~k~~Vr~aa~~aL~~i~~~~g-------------l~~ll~~l~~~L~~~k~~p~~R~ 991 (2015)
.+++.. ..+..++..+.+ ....+..++.-+|+.+...+. ...+++.+...+.+...++.+|.
T Consensus 453 ~p~l~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~ 529 (618)
T 1w63_A 453 SVEMHA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRG 529 (618)
T ss_dssp SCSTHH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred ChhHHH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 334333 234445555443 223344567888888876542 12345555555542112588999
Q ss_pred HHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHH
Q 000156 992 DLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 992 ~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
.++..+.+.+...+ +..+.+.. +-.+..|.+.|||..|..++.-+
T Consensus 530 ~~lta~~Kl~~~~~---~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 530 YALTAIMKLSTRFT---CTVNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp HHHHHHHHHHTTCS---SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc---chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999988776553 22444444 44567899999999999766554
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-09 Score=138.39 Aligned_cols=378 Identities=13% Similarity=0.081 Sum_probs=252.9
Q ss_pred cHHHHhhhccCCHHHHHHHHHHHHHHHHhcccc--c-----hHHHHHHHHHhcCCCCccc-HHHHHHHHHHHHHHHHHHc
Q 000156 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--D-----QSVEILVRLVCMLPGWSEK-NVQVQQQVIEVINYLAATA 674 (2015)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~--~-----~~~~~Lv~~L~~~pg~~Ds-N~qV~~~~Le~l~~l~~~~ 674 (2015)
-+.+++.|.+.++..|..|+..|.+++...... . .....|+.+ +.+. +..|+..++.+|..++...
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~------L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF------MRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHT------TSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHH------hCCCCCHHHHHHHHHHHHHHhCCC
Confidence 467889999999999999999999887542111 1 012233332 3444 7888888998888776521
Q ss_pred CCCchhHH-HHHHHHHHhhhc--chhhhHHHHHHHHHHHhhhC--hh-----HHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000156 675 TKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVG--PG-----FIFERLYKIMKDHKNPKVLSEGILWMVS 744 (2015)
Q Consensus 675 ~~~~~~~~-~~il~~LveKlg--D~K~r~~a~~~L~~l~e~~~--~~-----~Vl~~L~~~l~~~KnpKv~~~~l~~L~~ 744 (2015)
+......+ ..+++.|+.-+. +..+|..|..+|..++.... .. -+++.|+..+ .+.++.++..++..|..
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 11111111 235677777665 45789999999999886421 11 1355566665 56889999999999998
Q ss_pred HHHHhCCCC--CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 000156 745 AVEDFGVSH--LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (2015)
Q Consensus 745 li~~fG~~~--l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p 822 (2015)
+....+... .-...+++.+..+ +.+.++.||..|..+|+.|...... ....+ ++
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~------------~~~~~---~~-------- 297 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGPQE------------AIQAV---ID-------- 297 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSCHH------------HHHHH---HH--------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCHH------------HHHHH---Hh--------
Confidence 885431211 1234677888888 9999999999999999877532111 11111 00
Q ss_pred CCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000156 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2015)
Q Consensus 823 ~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~ 902 (2015)
..+.+.++..+.+.+|.+|..|+..|..++.........-.-..+++.|..
T Consensus 298 -----------------------------~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 298 -----------------------------VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp -----------------------------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred -----------------------------cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 003456778888899999999999999887421100000001357888899
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----------hh
Q 000156 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DK 971 (2015)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----------~~ 971 (2015)
.|.+.+..++..|+.+|+.|+.........++ ..++|.++..|.+....+|..|..+|..++...+. ..
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 99999999999999999998863222233332 35789999999999999999999999999876432 23
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC--------CCChh------hhHHHHHhhcCCCChHHHHHHHHHHH
Q 000156 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAA------HLLKPASIAMTDKSSDVRKAAEACIV 1037 (2015)
Q Consensus 972 ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--------~~~~~------~ll~pl~~~L~D~~~~VR~aA~~~L~ 1037 (2015)
+++.+...|.++ ++.+|..++..|...+..... ..... ..+..|...+.|.+.+|++.|..++.
T Consensus 429 ~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 429 CIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp CHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677888888765 588888888777665543211 11111 12344666789999999999988887
Q ss_pred HHHHH
Q 000156 1038 EILRA 1042 (2015)
Q Consensus 1038 ~l~~~ 1042 (2015)
.+...
T Consensus 507 ~~~~~ 511 (530)
T 1wa5_B 507 TYFGE 511 (530)
T ss_dssp HHSSS
T ss_pred HHCCc
Confidence 66544
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5.8e-08 Score=126.51 Aligned_cols=385 Identities=11% Similarity=0.052 Sum_probs=260.8
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHH--hhhhhhHhhhcCCc-HHHHHHHHHHHHHHHHHhchhhhhhH-
Q 000156 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR--ELGPLFKKTVADSN-APVQDKALDALIAYLKAADADAGRYA- 91 (2015)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~--~~~~~~~k~v~DsN-~~vqe~~leal~~~l~~~~~~~~~~~- 91 (2015)
|.+.|.+.+|..|..|...|.+.+....++.-..+. ...+.+.+++.+.+ +.+|..++.+|..+............
T Consensus 79 lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~ 158 (528)
T 4b8j_A 79 MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVID 158 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 567888999999999999999987653222211121 23455566777776 99999999999888754222111111
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh--h-----hhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCC-
Q 000156 92 KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V-----DVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAK- 162 (2015)
Q Consensus 92 ~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~--~-----~~v~~~L~~~~-~~KnpKv~~~~l~~L~~~l~~fG~~- 162 (2015)
...++.|+.-+-...+.+++.|..++..++.... . ..++..|+..+ .+.++.++..++.+|..+.......
T Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~ 238 (528)
T 4b8j_A 159 HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 238 (528)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC
T ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 2467778776333688999999998888875311 1 13466777777 6788999999999998876643221
Q ss_pred CcChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhh
Q 000156 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (2015)
Q Consensus 163 ~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (2015)
..-...+++.|..++.+.|..||..|..++..+.. +.+ .. .+.+ +
T Consensus 239 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~--~~~---~~---------~~~~---~------------------ 283 (528)
T 4b8j_A 239 FEQTRPALPALARLIHSNDEEVLTDACWALSYLSD--GTN---DK---------IQAV---I------------------ 283 (528)
T ss_dssp HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS--SCH---HH---------HHHH---H------------------
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCH---HH---------HHHH---H------------------
Confidence 11235689999999999999999998777655442 111 00 0000 0
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC
Q 000156 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 322 (2015)
Q Consensus 243 ~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~ 322 (2015)
. .| + + +.+...+.+.+|..|..|+..|..++.+.......
T Consensus 284 ---------~-~g-------------------------~---v--~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 323 (528)
T 4b8j_A 284 ---------E-AG-------------------------V---C--PRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC 323 (528)
T ss_dssp ---------H-TT-------------------------C---H--HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred ---------H-cC-------------------------H---H--HHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 00 0 1 24556677778899999999999887532100000
Q ss_pred --hHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC
Q 000156 323 --FTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (2015)
Q Consensus 323 --y~~l~~~L~k~l~D~-N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~ 398 (2015)
-..+++.|...+.+. +..|...|+.+|+.|+.+-....... -..++|.|+..+.+....++..+..+|..+...+.
T Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~ 403 (528)
T 4b8j_A 324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS 403 (528)
T ss_dssp HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC
Confidence 023577788888877 99999999999999987433222222 23678999999999999999999999999887511
Q ss_pred CC----h--HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---------HHHHhhh--hHHHHHHHHhcCCCHHH
Q 000156 399 LN----L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---------AVLKVHK--DYVPICMECLNDGTPEV 461 (2015)
Q Consensus 399 ~~----l--~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~---------~l~~~l~--~l~p~l~k~L~Ds~~~V 461 (2015)
.. + ..+++.++..+.+.++.++..++..|..++...... .+...+. ..+..+..++.+.+++|
T Consensus 404 ~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v 483 (528)
T 4b8j_A 404 HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEI 483 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHH
Confidence 00 1 245778888999999999999999999988644220 1111111 23567888899999999
Q ss_pred HHHHHHHHHHHHHH
Q 000156 462 RDAAFSVLAAIAKS 475 (2015)
Q Consensus 462 R~aA~~al~~l~~~ 475 (2015)
++.|...+..++..
T Consensus 484 ~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 484 YEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHCCC
Confidence 99999998866544
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-06 Score=119.59 Aligned_cols=502 Identities=12% Similarity=0.060 Sum_probs=289.1
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----
Q 000156 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---- 397 (2015)
Q Consensus 322 ~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~---- 397 (2015)
.|..-+..+...|.+.+..+...+++.+..+... -.....+|.|+..+.+..+.|++.+..+|..+..+.
T Consensus 112 ~~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~------~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 112 QFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA------ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp --------------CCSCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccccHHHHHHHhcCccHHHHHHHHHHHHhhhHH------HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 3444456666677777777777777777654321 234678999999999999999999999999887530
Q ss_pred -CCChHhHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcChh--HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 398 -CLNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKA--AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 398 -~~~l~~il~~l~~~L~~-Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
......+++.|+..|.+ .++.+|..++..|..+.. .... .+.. ...+|.|+.+|.+.++.||..|..+|..+.
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa 262 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLL 262 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 01124678888888875 489999999999988433 2211 1211 358899999999999999999999999888
Q ss_pred HHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCC
Q 000156 474 KSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPA 553 (2015)
Q Consensus 474 ~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~ 553 (2015)
....+. +..+.+ ..
T Consensus 263 ~~~~~~-------------~~~v~~---~g-------------------------------------------------- 276 (780)
T 2z6g_A 263 LHQEGA-------------KMAVRL---AG-------------------------------------------------- 276 (780)
T ss_dssp HHSTTH-------------HHHHHH---TT--------------------------------------------------
T ss_pred CCChhh-------------HHHHHH---cC--------------------------------------------------
Confidence 764431 111110 00
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhcc
Q 000156 554 SKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ 633 (2015)
Q Consensus 554 ~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~ 633 (2015)
.-+.++..|.+.+|+.|..++..|..+.....
T Consensus 277 ------------------------------------------------~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~ 308 (780)
T 2z6g_A 277 ------------------------------------------------GLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 308 (780)
T ss_dssp ------------------------------------------------HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred ------------------------------------------------CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 00234455566667766666666554332110
Q ss_pred c------cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHH
Q 000156 634 N------LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLT 707 (2015)
Q Consensus 634 ~------~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~ 707 (2015)
+ .....+.|++++.. .....+...+..++..+.. + ...+..
T Consensus 309 e~~~~i~~~~~i~~Lv~lL~~-----~~~~~~~~~a~~aL~~Ls~-~---------------------~~~~~~------ 355 (780)
T 2z6g_A 309 ESKLIILASGGPQALVNIMRT-----YTYEKLLWTTSRVLKVLSV-C---------------------SSNKPA------ 355 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHT-S---------------------TTHHHH------
T ss_pred HHHHHHHHcCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHhhc-C---------------------hHHHHH------
Confidence 0 00112334444321 0111122222333332221 1 011100
Q ss_pred HHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000156 708 TFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2015)
Q Consensus 708 ~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (2015)
+.+ .-+++.|+..+ .+.++.++..++..|.++...... ......+++.+..+ +.+.++.||..|..+|+.|.
T Consensus 356 -i~~----~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~i~~Lv~l-L~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 356 -IVE----AGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp -HHH----TTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCTT-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHT
T ss_pred -HHH----hchHHHHHHHH-cCCchHHHHHHHHHHHHHhccchh-hhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHH
Confidence 000 01334444443 455777888888888777754322 22346788888888 99999999999999998774
Q ss_pred HHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCC-CC
Q 000156 788 KFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PD 866 (2015)
Q Consensus 788 ~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d-~~ 866 (2015)
... +.....+ -+. ...+.|+..+.+ .+
T Consensus 428 ~~~-~~~~~~i---------------~~~------------------------------------g~i~~Lv~lL~~~~~ 455 (780)
T 2z6g_A 428 CNN-YKNKMMV---------------CQV------------------------------------GGIEALVRTVLRAGD 455 (780)
T ss_dssp SSC-HHHHHHH---------------HTT------------------------------------THHHHHHHHHHHHTT
T ss_pred hCC-HHHHHHH---------------HHC------------------------------------CCHHHHHHHHHccCC
Confidence 321 1111110 000 011234444433 23
Q ss_pred h-HHHHHHHHHHHHHHHhcccc---CCCCC-hhhHHHHHHhccccch-HHHHHHHHHHHHHHHHHhChhhHHhh--hHHH
Q 000156 867 W-KVRLESIEAVNKILEEANKR---IQPAG-TGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (2015)
Q Consensus 867 W-k~R~eale~L~~ll~~a~~~---I~~~~-~~eL~~~L~~rL~DsN-~~V~~~Al~~l~~La~alg~~f~~~~--~~ll 938 (2015)
| .+|..|+..|..|.... .. .+... -...++.|...|.+.+ ..|+..|+.+|+.|+. +......+ ..++
T Consensus 456 ~~~v~~~Al~aL~nL~~~~-~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i 532 (780)
T 2z6g_A 456 REDITEPAICALRHLTSRH-QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAI 532 (780)
T ss_dssp CHHHHHHHHHHHHHTTSSS-TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCH
Confidence 4 78888888888764210 00 00000 0234677888887666 4899999999999984 33322211 2467
Q ss_pred HHHHHHhCCCc----------------------HHHHHHHHHHHHHHHHh------cCchhhHHHHHHHHhcCCCChhHH
Q 000156 939 SDILKCLGDNK----------------------KHMRECTLTVLDAWLAA------VHLDKMVPYVTTALTDAKLGAEGR 990 (2015)
Q Consensus 939 p~ll~~L~D~k----------------------~~Vr~aa~~aL~~i~~~------~gl~~ll~~l~~~L~~~k~~p~~R 990 (2015)
|.|+..|.+.. ..++.++..||..++.. +.-..+++.+...|.+. ++.+|
T Consensus 533 ~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~ 610 (780)
T 2z6g_A 533 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP--IENIQ 610 (780)
T ss_dssp HHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--CHHHH
T ss_pred HHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--CHHHH
Confidence 88887776532 34667777777775421 11134577888888876 57888
Q ss_pred HHHHHHHHHHhccCCCC-CCh--hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000156 991 KDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 991 ~~~l~~L~~~l~~~~~~-~~~--~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~ 1045 (2015)
..++..|...... ... ..+ ...+.+|..++.|.+.+||..|..+|..+...-+.
T Consensus 611 ~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~ 667 (780)
T 2z6g_A 611 RVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 667 (780)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH
Confidence 8888777654321 100 011 12456688899999999999999999988776553
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-08 Score=133.14 Aligned_cols=379 Identities=12% Similarity=0.078 Sum_probs=254.1
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhcc-cc-c-----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NL-D-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~-~~-~-----~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (2015)
+.+++.|.+.++..|..|+..|..++.... +. . .....|+.+|. .+.+..++..++.+|..++...+.
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~-----~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT-----REDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC-----CCCCHHHHHHHHHHHHHHhCCCHH
Confidence 678899999999999999999998876532 11 1 12345555553 122377888899999888763211
Q ss_pred CchhHH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhCh--hH-----HHHHHHHHhhhCCChhHHHHHHHHHHHHH
Q 000156 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (2015)
Q Consensus 677 ~~~~~~-~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~--~~-----Vl~~L~~~l~~~KnpKv~~~~l~~L~~li 746 (2015)
.....+ ..+++.|+.-+.+ ..++..|..+|..++..... .. +++.|+..+..+.++.++..++..|..+.
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111111 1367888877765 46899999999999864221 11 35566666546788999999999999887
Q ss_pred HHhCCCC-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCc
Q 000156 747 EDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPK 825 (2015)
Q Consensus 747 ~~fG~~~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~ 825 (2015)
....... .-...+++.+..+ +.+.++.||..|..+|+.|......... .+-.
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~------------~~~~-------------- 284 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDKIQ------------AVIE-------------- 284 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHHHH------------HHHH--------------
T ss_pred cCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHH------------HHHH--------------
Confidence 6432111 1135678888888 9999999999999998876532111111 0000
Q ss_pred ccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc
Q 000156 826 KTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (2015)
Q Consensus 826 R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~ 905 (2015)
..+.+.++..+.+.+|.+|..|+..|..++.........-.-..+++.|...|.
T Consensus 285 --------------------------~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 285 --------------------------AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp --------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred --------------------------cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc
Confidence 003456788888999999999999999887521110100001346788888888
Q ss_pred cc-hHHHHHHHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhHHH
Q 000156 906 DS-NKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPY 975 (2015)
Q Consensus 906 Ds-N~~V~~~Al~~l~~La~alg~~f~~~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl--------~~ll~~ 975 (2015)
+. +..|+..|+.+|+.|+..-........ ..++|.++..|.+....++..|..+|..++...+. ..+++.
T Consensus 339 ~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 418 (528)
T 4b8j_A 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 418 (528)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 88 999999999999999863222222222 36789999999999999999999999999877321 246777
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHhccCCC--------CCChhh------hHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000156 976 VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 976 l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--------~~~~~~------ll~pl~~~L~D~~~~VR~aA~~~L~~l~~ 1041 (2015)
+...|.++ ++.++..++..|...+..... ...+.. .+..+..+..+.+.+|++.|..++..+..
T Consensus 419 L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 419 LCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 88888765 578888877777665532211 111111 23446667789999999999988876644
Q ss_pred H
Q 000156 1042 A 1042 (2015)
Q Consensus 1042 ~ 1042 (2015)
.
T Consensus 497 ~ 497 (528)
T 4b8j_A 497 D 497 (528)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-06 Score=115.88 Aligned_cols=343 Identities=12% Similarity=0.089 Sum_probs=183.5
Q ss_pred HHHHHHHHhhccCCC--CchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcC-CCh
Q 000156 31 ANIDLAALCDSITDP--KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRP 107 (2015)
Q Consensus 31 ayeeL~~~~~~~~d~--~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~~~~v~~~LieK~l~-~k~ 107 (2015)
++.++++.++..... .......-..-+++-+.+.+....-.++.-+..+.-. |.+......+++ |++. .+-
T Consensus 11 ~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~-G~d~~~~~~~vi-----k~~~s~~~ 84 (618)
T 1w63_A 11 RLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHML-GYPAHFGQLECL-----KLIASQKF 84 (618)
T ss_dssp CHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHT-TCCCGGGHHHHH-----HHHHSSSH
T ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHc-CCCCcchHHHHH-----HHHcCCch
Confidence 356777777653210 0011112233445566666655555555555544333 333322333444 3333 466
Q ss_pred hHHHHHHHHHHHHHhhhhhh---hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhhhhhhcCCChhH
Q 000156 108 KTVEKAQAVFMLWVELEAVD---VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNV 184 (2015)
Q Consensus 108 ~~k~~a~~~ll~~~E~~~~~---~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~d~~V 184 (2015)
..|..+--.+..|.+. +++ -++..|.+-+.++||-++..|+.+|..+ |...+ ...+++.+.++|.|+++.|
T Consensus 85 ~~Krl~Yl~~~~~~~~-~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~~~~-~~~l~~~l~~~L~~~~~~V 158 (618)
T 1w63_A 85 TDKRIGYLGAMLLLDE-RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCM----GSSEM-CRDLAGEVEKLLKTSNSYL 158 (618)
T ss_dssp HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHH----CCHHH-HHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhc----CCHHH-HHHHHHHHHHHHcCCCHHH
Confidence 6777765555555542 344 3567888899999999999999998765 32111 3567899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCC
Q 000156 185 RASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTA 264 (2015)
Q Consensus 185 R~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~ 264 (2015)
|..|..++..+|+...+ .+.. +++.+
T Consensus 159 Rk~A~~al~~l~~~~p~-~v~~-~~~~l---------------------------------------------------- 184 (618)
T 1w63_A 159 RKKAALCAVHVIRKVPE-LMEM-FLPAT---------------------------------------------------- 184 (618)
T ss_dssp HHHHHHHHHHHHHHCGG-GGGG-GGGGT----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHChH-HHHH-HHHHH----------------------------------------------------
Confidence 99999999999986532 2311 11110
Q ss_pred CCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcC-CCC---CCCChHHHHHHHHHHhc-----
Q 000156 265 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRI---APGDFTEVCRTLKKLIT----- 335 (2015)
Q Consensus 265 ~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki---~~~~y~~l~~~L~k~l~----- 335 (2015)
.+.+.+.+-..+..|+..|..+... +.. .......++..|...+.
T Consensus 185 --------------------------~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~ 238 (618)
T 1w63_A 185 --------------------------KNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSP 238 (618)
T ss_dssp --------------------------TTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCT
T ss_pred --------------------------HHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 0001111222222333333332210 000 00011223333333211
Q ss_pred ------ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh---HhHHH
Q 000156 336 ------DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL---VDVVE 406 (2015)
Q Consensus 336 ------D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l---~~il~ 406 (2015)
..+.-+....+++++.++..- +........+++.++......+..-..-..+|+.+++.- .... ..+++
T Consensus 239 ~~~~~~~~~~~~q~~il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l-~~~~~l~~~a~~ 316 (618)
T 1w63_A 239 EHDVSGISDPFLQVRILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI-KSESGLRVLAIN 316 (618)
T ss_dssp TTCSSSSSCHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS-CCCHHHHHHHHH
T ss_pred cccccCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc-CCCHHHHHHHHH
Confidence 134444455566666655320 111112233444454433222211122223344444432 1111 13456
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000156 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2015)
Q Consensus 407 ~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l 472 (2015)
.+...+.++++.+|..++.+|..+....+. .+....+.+..|+.|.+..||..|.+++..+
T Consensus 317 ~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-----~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l 377 (618)
T 1w63_A 317 ILGRFLLNNDKNIRYVALTSLLKTVQTDHN-----AVQRHRSTIVDCLKDLDVSIKRRAMELSFAL 377 (618)
T ss_dssp HHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-----HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhhCHH-----HHHHHHHHHHHHccCCChhHHHHHHHHHHHH
Confidence 666778889999999999999988765432 2355667899999999999999998877654
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.89 E-value=0.00012 Score=102.25 Aligned_cols=330 Identities=9% Similarity=0.065 Sum_probs=184.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcc----ccc------hHHHHHHHHHhcCCCCccc---HHHHHHHHHHHHHHHHHHcCCCch
Q 000156 613 AVWKERLEAISSLRQQVEAVQ----NLD------QSVEILVRLVCMLPGWSEK---NVQVQQQVIEVINYLAATATKFPK 679 (2015)
Q Consensus 613 ~~Wk~Rl~a~e~L~~~v~~~~----~~~------~~~~~Lv~~L~~~pg~~Ds---N~qV~~~~Le~l~~l~~~~~~~~~ 679 (2015)
.+|+.|.+|+..++.+..... ... ...+.+...+ .|.+.|. +..|+..++.++..+.+.. .+
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v--~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~ 491 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI--APDLTSNNIPHIILRVDAIKYIYTFRNQL---TK 491 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT--HHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CH
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh--HHHhcCCCCCCceehHHHHHHHHHHHhhC---CH
Confidence 579999999999998865321 011 1112222221 1334455 8899999999998877643 45
Q ss_pred hHHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhhC-----------------hhHHHHHHHHHhhhCCC---hh--HH
Q 000156 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVG-----------------PGFIFERLYKIMKDHKN---PK--VL 735 (2015)
Q Consensus 680 ~~~~~il~~LveKlgD~--K~r~~a~~~L~~l~e~~~-----------------~~~Vl~~L~~~l~~~Kn---pK--v~ 735 (2015)
..+..+++.++..+.|. .++..|..+|..+++... ...+++.++..+ +..+ ++ ..
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll-~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI-LKHGSSPEKLAEN 570 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH-HTTCCCHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH-HhccCCCCccccc
Confidence 67888899999988884 579999999999988421 122444444443 2221 22 34
Q ss_pred HHHHHHHHHHHHHhCCCCCC-hhhH----HHHHHhcCCC-CCchhHHHHHHHHHHHHHHHhChh-HHhhhhhccHHHHHH
Q 000156 736 SEGILWMVSAVEDFGVSHLK-LKDL----IDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSA 808 (2015)
Q Consensus 736 ~~~l~~L~~li~~fG~~~l~-~k~l----i~~l~~~gL~-~sn~~VR~aA~~ll~~Ly~~~G~~-l~~~L~~lkp~ll~~ 808 (2015)
...+..|..++..++....+ ...+ +..+... .. ..++..+....++++.+.+..|+. +..+.+.+-|.+...
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~-~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~i 649 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIM-AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 56677777777777643222 2223 3333333 33 357888988999999999887764 344445555555554
Q ss_pred HHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHH--HhcCCCChHHHHHHHHHHHHHHHhccc
Q 000156 809 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV--KSLESPDWKVRLESIEAVNKILEEANK 886 (2015)
Q Consensus 809 Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll--~~l~d~~Wk~R~eale~L~~ll~~a~~ 886 (2015)
++..........-..-...+... +.+++ ....+-+-++ ..+....|- -..+..|...+.....
T Consensus 650 L~~~~~~~~~~~~~i~~~l~~~~-----------~~~~~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~~~~~~~~ 714 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVVEQS-----------ATIPE--SIKPLAQPLLAPNVWELKGNI--PAVTRLLKSFIKTDSS 714 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHHC-----------SSCCT--TTGGGHHHHTSGGGGCCTTTH--HHHHHHHHHHHHHHGG
T ss_pred HHhhhHhhHHHHHHHHHHHHHhc-----------cCCCH--HHHHHHHHHcCHHHhcCCCCc--hhHHHHHHHHHHhChH
Confidence 43211000000000000000000 00110 0111112222 222222221 1344455555543222
Q ss_pred cCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChh-hHHhhhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHH
Q 000156 887 RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWL 964 (2015)
Q Consensus 887 ~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~-f~~~~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i~ 964 (2015)
.+.. ...++..+...+.+.+. ...++.+++.++..+|.. |.+|+..+++.++..+...+ ..++......+..++
T Consensus 715 ~~~~--~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 715 IFPD--LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp GCSC--SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 2322 24466666666655432 378999999999999999 99999999999999997764 445545544554444
Q ss_pred HhcC
Q 000156 965 AAVH 968 (2015)
Q Consensus 965 ~~~g 968 (2015)
-..+
T Consensus 791 ~~~~ 794 (960)
T 1wa5_C 791 NKLG 794 (960)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 3444
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-06 Score=116.07 Aligned_cols=518 Identities=13% Similarity=0.079 Sum_probs=299.0
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh-hhHhH
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFL 367 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~l 367 (2015)
.+...+.+.+...|..++..++.+.. ..+. ...++.|.+.+.+.+..|+..|+.+|..|+..-.....- ....+
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~~-~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQDD-AELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhhH-HHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 57777888888888888887765421 1111 456777777888889999999999999998743221111 12468
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHHHHHh--c--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000156 368 LPVLLEKLKEK-KPTVAESLTQTLQAMHKA--G--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2015)
Q Consensus 368 lp~LL~klkdk-k~~V~~aa~~aL~al~~~--~--~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2015)
++.|+..+++. ...++..+..+|..+... + ...-...++.|+..|++.++.+|..++..|..+........ ...
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MAV 272 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH-HHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH-HHH
Confidence 99999999754 788999999999886532 0 00012467888899999999999999999998776543211 111
Q ss_pred -hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCC
Q 000156 443 -HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (2015)
Q Consensus 443 -l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (2015)
-...+|.++++|.+.+..||..+..++..+.. +.......+-..+. ...+...+...
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~--i~~Lv~lL~~~------------------ 330 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGG--PQALVNIMRTY------------------ 330 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTH--HHHHHHHHTTC------------------
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCC--HHHHHHHHhcC------------------
Confidence 14688999999999999999999999986652 33211111100000 00111111000
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhcc
Q 000156 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (2015)
Q Consensus 522 s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l 601 (2015)
+.+.....+
T Consensus 331 --------------------------------------------------------------------~~~~~~~~a--- 339 (780)
T 2z6g_A 331 --------------------------------------------------------------------TYEKLLWTT--- 339 (780)
T ss_dssp --------------------------------------------------------------------CCHHHHHHH---
T ss_pred --------------------------------------------------------------------CHHHHHHHH---
Confidence 001111000
Q ss_pred CcHHHHhhhcc-CCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh
Q 000156 602 IPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (2015)
Q Consensus 602 l~~~l~~~L~s-~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~ 680 (2015)
..++..|.. ...+.. ++.. .....|+.+ +.+.+..+...++.+|..++.......
T Consensus 340 --~~aL~~Ls~~~~~~~~---------i~~~-----g~l~~Ll~l------L~~~~~~~~~~a~~~L~~L~~~~~~~~-- 395 (780)
T 2z6g_A 340 --SRVLKVLSVCSSNKPA---------IVEA-----GGMQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE-- 395 (780)
T ss_dssp --HHHHHHHHTSTTHHHH---------HHHT-----THHHHHGGG------TTCSCHHHHHHHHHHHHHHHTTCTTCS--
T ss_pred --HHHHHHhhcChHHHHH---------HHHh-----chHHHHHHH------HcCCchHHHHHHHHHHHHHhccchhhh--
Confidence 011111111 111110 0000 012223322 345566677888888888876443321
Q ss_pred HHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHhhhCCC-hhHHHHHHHHHHHHHHHhC
Q 000156 681 CVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKN-PKVLSEGILWMVSAVEDFG 750 (2015)
Q Consensus 681 ~~~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~-------~~Vl~~L~~~l~~~Kn-pKv~~~~l~~L~~li~~fG 750 (2015)
....+++.|+..+.+ ..++..|..+|..++..... .-.++.|+..+....+ ..++..++..|.++....+
T Consensus 396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 234577888776654 56888888888887653210 1246666666644333 4899999888887643211
Q ss_pred CC-----CCChhhHHHHHHhcCCCCCch-hHHHHHHHHHHHHHHHhChhHHhhh--hhccHHHHHHHHHHHhcCCCCCCC
Q 000156 751 VS-----HLKLKDLIDFCKDTGLQSSAA-ATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTV 822 (2015)
Q Consensus 751 ~~-----~l~~k~li~~l~~~gL~~sn~-~VR~aA~~ll~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p 822 (2015)
.. .+-....++.+..+ |.+.+. .||.+|..+|+.|.. ++.....+ .++-|.+.+.+......++.+..-
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~l-L~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~ 552 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhh
Confidence 10 00001235666666 777764 999999999998864 44333333 355677777776533221110000
Q ss_pred CCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhc-c-ccCCCCChhhHHHHH
Q 000156 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-N-KRIQPAGTGELFGGL 900 (2015)
Q Consensus 823 ~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a-~-~~I~~~~~~eL~~~L 900 (2015)
+ .+... +. . +.....+|..++..|..+.... + ..+. -...++.|
T Consensus 553 a----------------l~nq~---------~~----~--~~~~~~v~~~a~~aL~~La~~~~~~~~l~---~~~~i~~L 598 (780)
T 2z6g_A 553 G----------------GTQQQ---------FV----E--GVRMEEIVEACTGALHILARDIHNRIVIR---GLNTIPLF 598 (780)
T ss_dssp ---------------------C---------CS----T--TCCHHHHHHHHHHHHHHHTTSHHHHHHHH---HTCCHHHH
T ss_pred c----------------cccch---------hh----c--ccChHHHHHHHHHHHHHHhcChhhHHHHH---HCCcHHHH
Confidence 0 00000 00 0 0011235556666666654210 0 0011 03457888
Q ss_pred HhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000156 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 901 ~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~--llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2015)
...|.+.+..|+..|+.++..|+. .+.....+.. .++.|+..+.+.+..||..|..+|..+...-+
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 999999999999999999998862 2334433333 67889999999999999999999999887654
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-05 Score=108.03 Aligned_cols=538 Identities=12% Similarity=0.093 Sum_probs=298.5
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhh------cchhhh-H
Q 000156 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRT------HFSGSS-R 365 (2015)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~------~f~~~~-~ 365 (2015)
.+.+-..| |-+.|..+-+.| +| ...|...+. +.+..++..|+..++...+.--. .+.+.. .
T Consensus 15 ~spd~~~r--Ae~~L~~~~~~p-----~~---~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~ 84 (960)
T 1wa5_C 15 VIASTAKT--SERNLRQLETQD-----GF---GLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE 84 (960)
T ss_dssp TSGGGHHH--HHHHHHHHHTST-----TH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH
T ss_pred cCCCHHHH--HHHHHHHhhcCC-----CH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHH
Confidence 34455566 777777764433 23 334444553 34678899999999888764211 222222 2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh--------
Q 000156 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-------- 436 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~-------- 436 (2015)
.+=..++..+.+....||..+..++..++.+ .....+++++.|...+++.++..+.+++..|..+++.+..
T Consensus 85 ~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~ 164 (960)
T 1wa5_C 85 LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELF 164 (960)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHH
Confidence 2223445555455588999999999999886 2234678999999999888888999999999998886541
Q ss_pred hHHHHhhhhHHH----H---HHHHhcCCCH---HHHHHHHHHHHHHHHHhCc----hHHHHHHHhccHHHHHHHHHHHhc
Q 000156 437 AAVLKVHKDYVP----I---CMECLNDGTP---EVRDAAFSVLAAIAKSVGM----RPLERSIEKLDDVRRNKLSEMIAG 502 (2015)
Q Consensus 437 ~~l~~~l~~l~p----~---l~k~L~Ds~~---~VR~aA~~al~~l~~~~Ge----~~~~~~l~~Ld~~~~kkI~e~~~~ 502 (2015)
..+...+..+.+ . +..++.+... .+| .+.+++-.+.++++. ..-..+.+.++.- ...+..++..
T Consensus 165 ~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~ 242 (960)
T 1wa5_C 165 LEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN-ILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVG-MGIFHKYLSY 242 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH-HHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHH-HHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHH-HHHHHHHHcC
Confidence 111112222333 2 2334665533 255 233333333333321 0000011111110 0111122211
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCC
Q 000156 503 SGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPE 582 (2015)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~ 582 (2015)
. .|.. ..++ +
T Consensus 243 ~------------------------------------------~p~~---------------------------~~d~-d 252 (960)
T 1wa5_C 243 S------------------------------------------NPLL---------------------------EDPD-E 252 (960)
T ss_dssp C------------------------------------------SCCC---------------------------C-----
T ss_pred C------------------------------------------CCcc---------------------------cCCc-c
Confidence 0 0000 0000 0
Q ss_pred CCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccc-cchH----HHHHHHHHhcCCCCcccHH
Q 000156 583 DVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN-LDQS----VEILVRLVCMLPGWSEKNV 657 (2015)
Q Consensus 583 ~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~-~~~~----~~~Lv~~L~~~pg~~DsN~ 657 (2015)
+.+.+ ..|+.|..+++.|..+++...+ ..+. .+.++..+... +-....-
T Consensus 253 ---~~~~~----------------------~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~~ 306 (960)
T 1wa5_C 253 ---TEHAS----------------------VLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSI-SNQPKYD 306 (960)
T ss_dssp -----CCC----------------------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC-CSCTTSH
T ss_pred ---ccccc----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCcH
Confidence 00001 1255565666666555543211 1111 22333333211 1012234
Q ss_pred HHHHHHHHHHHHHHHHc--CCCc--hhHHHHHH-HHHHhhh-----------------------cc--hhhhHHHHHHHH
Q 000156 658 QVQQQVIEVINYLAATA--TKFP--KKCVVLCL-LGISERV-----------------------AD--IKTRAHAMKCLT 707 (2015)
Q Consensus 658 qV~~~~Le~l~~l~~~~--~~~~--~~~~~~il-~~LveKl-----------------------gD--~K~r~~a~~~L~ 707 (2015)
.+...++++|..+++.- ..+. ...+..++ +.++..+ ++ ...|..|.++|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 57778888888876421 1111 13333333 2222221 01 135788999999
Q ss_pred HHHhhhChhHHHHHHHHHh---hh------CCChhHHHHHHHHHHHHHHHh-CCC-C-------CChhhH-HHHHHhcCC
Q 000156 708 TFSEAVGPGFIFERLYKIM---KD------HKNPKVLSEGILWMVSAVEDF-GVS-H-------LKLKDL-IDFCKDTGL 768 (2015)
Q Consensus 708 ~l~e~~~~~~Vl~~L~~~l---~~------~KnpKv~~~~l~~L~~li~~f-G~~-~-------l~~k~l-i~~l~~~gL 768 (2015)
.++...+ +.+++.+++.+ +. +.+|+.+.+++..+..+.+.. |.. + +++..+ ...+... +
T Consensus 387 ~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~-l 464 (960)
T 1wa5_C 387 ELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD-L 464 (960)
T ss_dssp HHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH-H
T ss_pred HHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHH-h
Confidence 9999887 55555555433 22 678999999999998886431 111 1 134443 3344444 6
Q ss_pred CCC---chhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000156 769 QSS---AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2015)
Q Consensus 769 ~~s---n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2015)
.++ ++-||..|..+++.+..++.+. ++..
T Consensus 465 ~~~~~~~p~vr~~a~~~lg~~~~~~~~~---~l~~--------------------------------------------- 496 (960)
T 1wa5_C 465 TSNNIPHIILRVDAIKYIYTFRNQLTKA---QLIE--------------------------------------------- 496 (960)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSCHH---HHHH---------------------------------------------
T ss_pred cCCCCCCceehHHHHHHHHHHHhhCCHH---HHHH---------------------------------------------
Confidence 666 8999999999998776543211 1111
Q ss_pred CCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhc-----------cccCCCCChhhHHHHHHhccccc-----hH
Q 000156 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-----------NKRIQPAGTGELFGGLRGRLYDS-----NK 909 (2015)
Q Consensus 846 prvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a-----------~~~I~~~~~~eL~~~L~~rL~Ds-----N~ 909 (2015)
+.+.++..+.|.+-.+|..|...+..+++.. ...+.|. +..++..|...+... ..
T Consensus 497 --------~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~-l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 497 --------LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS-TEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp --------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT-HHHHHHHHHHHHHTTCCCHHHH
T ss_pred --------HHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhh-HHHHHHHHHHHHHhccCCCCcc
Confidence 2234555666777788999999999888631 1224555 477888887777542 11
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHhcCc-------hhhHHHHH
Q 000156 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD-----NKKHMRECTLTVLDAWLAAVHL-------DKMVPYVT 977 (2015)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D-----~k~~Vr~aa~~aL~~i~~~~gl-------~~ll~~l~ 977 (2015)
.....++.+++.++..++..+.+|+..+++.++..+.. .++..+..+.+||..++...+. +.++|.+.
T Consensus 568 ~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~ 647 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFL 647 (960)
T ss_dssp TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 13357789999999999999999999999988876642 3567788899999999988552 34566666
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHh
Q 000156 978 TALTDAKLGAEGRKDLFDWLSKQL 1001 (2015)
Q Consensus 978 ~~L~~~k~~p~~R~~~l~~L~~~l 1001 (2015)
..|++. ..+...+++..+...+
T Consensus 648 ~iL~~~--~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 648 TVFSED--IQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHTT--CTTTHHHHHHHHHHHH
T ss_pred HHHHhh--hHhhHHHHHHHHHHHH
Confidence 666643 2344555555554443
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-07 Score=123.27 Aligned_cols=295 Identities=12% Similarity=0.172 Sum_probs=215.0
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHHHhh----hhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhH
Q 000156 94 VCDAIAAKCLTG-RPKTVEKAQAVFMLWVEL----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKR 168 (2015)
Q Consensus 94 v~~~LieK~l~~-k~~~k~~a~~~ll~~~E~----~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~ 168 (2015)
++..++.+...+ ....++.|..+...+..- ..+..+++.|.+++.+|+.- .+++..+..+.+.||... +..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~-~~e~ 91 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSP-SVEP 91 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCT-TTHH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCC-Cccc
Confidence 344455553223 344444554444433311 11347889999998877544 999999999998898743 3455
Q ss_pred ----HHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHh
Q 000156 169 ----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKE 244 (2015)
Q Consensus 169 ----il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~ 244 (2015)
+++.+...++|.++.||++|...+..++.-+.+.+++..|
T Consensus 92 ~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~------------------------------------ 135 (986)
T 2iw3_A 92 YIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALL------------------------------------ 135 (986)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHH------------------------------------
T ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHH------------------------------------
Confidence 4577778889999999999999988888877654331111
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhc-cCChHHHHHHHHHHHHHhc-CCCCCCCC
Q 000156 245 LGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK-ATKWSERKDAVAELTKLAS-TKRIAPGD 322 (2015)
Q Consensus 245 ~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~-s~kWkeR~eaL~~L~~l~~-~~ki~~~~ 322 (2015)
+.+++.+. +.||+.+..||..|..++. .|......
T Consensus 136 -------------------------------------------~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~ 172 (986)
T 2iw3_A 136 -------------------------------------------PHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR 172 (986)
T ss_dssp -------------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred -------------------------------------------HHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 12333333 4589999999999999984 45444455
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---C-
Q 000156 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---C- 398 (2015)
Q Consensus 323 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~---~- 398 (2015)
+.++++.+..++-|....|...|..++..++..+++ .-+..++|.|++.+.+... .-+|+..+.... .
T Consensus 173 ~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n---~d~~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v 244 (986)
T 2iw3_A 173 MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN---KDIERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEV 244 (986)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC---TTTGGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCC
T ss_pred ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC---cchhhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeee
Confidence 789999999999999999999999999999988875 3455678888888888744 446667665540 1
Q ss_pred --CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc-ChhHHHHhhhhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Q 000156 399 --LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECL-NDGTPEVRDAAFSVLAAIAK 474 (2015)
Q Consensus 399 --~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~k~L-~Ds~~~VR~aA~~al~~l~~ 474 (2015)
.+|.-++|.|..+|..+...+|+.++-.+.++..-. ++....++++.++|.+.+.. +-++||||+.|.+|+.++.+
T Consensus 245 ~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 245 TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 125667899999999999999999998888866544 34556678899999999976 57899999999999999988
Q ss_pred HhCc
Q 000156 475 SVGM 478 (2015)
Q Consensus 475 ~~Ge 478 (2015)
..+.
T Consensus 325 ~~~~ 328 (986)
T 2iw3_A 325 VGNV 328 (986)
T ss_dssp HHTC
T ss_pred hhcc
Confidence 7664
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.6e-05 Score=100.89 Aligned_cols=469 Identities=13% Similarity=0.052 Sum_probs=277.6
Q ss_pred hhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcCh
Q 000156 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSK 436 (2015)
Q Consensus 363 ~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~-----~~l~~il~~l~~~L~~K-np~vR~~~l~~L~~~l~~~~~ 436 (2015)
+....+|.|+..+++..+.|+..+..+|..+..... .....+++.++..|.+. ++.+|..++..|..+.. ...
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~ 89 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HRE 89 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-Chh
Confidence 345578999999999999999999999999986510 11235678888888864 89999999998885432 221
Q ss_pred hHHHHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000156 437 AAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSAR 515 (2015)
Q Consensus 437 ~~l~~~-l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~ 515 (2015)
..... -...+|.|+.+|.+.++.||..|..+|..+.....+. . ..+.+ ..
T Consensus 90 -~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~-~------------~~v~~---~g------------ 140 (644)
T 2z6h_A 90 -GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-K------------MAVRL---AG------------ 140 (644)
T ss_dssp -HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH-H------------HHHHH---TT------------
T ss_pred -hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh-H------------HHHHH---CC------------
Confidence 11111 1358899999999999999999999999888764321 1 11110 00
Q ss_pred ccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHH
Q 000156 516 VQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIE 595 (2015)
Q Consensus 516 ~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e 595 (2015)
T Consensus 141 -------------------------------------------------------------------------------- 140 (644)
T 2z6h_A 141 -------------------------------------------------------------------------------- 140 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHH
Q 000156 596 SRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669 (2015)
Q Consensus 596 ~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~------~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~ 669 (2015)
.-+.++..|.+.+|+.+..++..|..+..+.++. ....+.|+++|.. .....+...++.++..
T Consensus 141 ------~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~-----~~~~~~~~~a~~~L~n 209 (644)
T 2z6h_A 141 ------GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT-----YTYEKLLWTTSRVLKV 209 (644)
T ss_dssp ------HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT-----CCCHHHHHHHHHHHHH
T ss_pred ------ChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc-----CChHHHHHHHHHHHHH
Confidence 0023445566666766666666665544221100 0113344444421 0112223333333322
Q ss_pred HHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHh
Q 000156 670 LAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF 749 (2015)
Q Consensus 670 l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~f 749 (2015)
+.. +...+.. +.+. -+++.+++.+ .+.++.++..++..|.++....
T Consensus 210 Ls~----------------------~~~~~~~-------l~~~----g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 210 LSV----------------------CSSNKPA-------IVEA----GGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp HTT----------------------CTTHHHH-------HHHT----THHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGC
T ss_pred Hhc----------------------CcccHHH-------HHHC----CCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcc
Confidence 221 1111111 1110 1344455544 4557888888888888876543
Q ss_pred CCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccc
Q 000156 750 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (2015)
Q Consensus 750 G~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r 829 (2015)
. .......+++.+..+ +.+.++.||..|..+|..|... ++.....+ .+ . +
T Consensus 256 ~-~~~~~~~~i~~Lv~l-L~~~d~~v~~~a~~aL~~L~~~-~~~~~~~v-----------~~----~---g--------- 305 (644)
T 2z6h_A 256 T-KQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCN-NYKNKMMV-----------CQ----V---G--------- 305 (644)
T ss_dssp T-TCCSCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTT-CHHHHHHH-----------HH----T---T---------
T ss_pred h-hhhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHcC-CHHHHHHH-----------HH----c---C---------
Confidence 2 222346788888888 9999999999999999888542 11111111 00 0 0
Q ss_pred CccccCCCCCCCCCCCCCcccccccchHHHHhcCC--CChHHHHHHHHHHHHHHHhccc--cCCCCC-hhhHHHHHHhcc
Q 000156 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES--PDWKVRLESIEAVNKILEEANK--RIQPAG-TGELFGGLRGRL 904 (2015)
Q Consensus 830 ~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d--~~Wk~R~eale~L~~ll~~a~~--~I~~~~-~~eL~~~L~~rL 904 (2015)
..+.++..+.+ ..+.+|..|+..|..+...... ..+... ....++.|...|
T Consensus 306 ------------------------~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL 361 (644)
T 2z6h_A 306 ------------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 361 (644)
T ss_dssp ------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTT
T ss_pred ------------------------CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHh
Confidence 11234444433 2378888888888887531000 000000 124577888888
Q ss_pred ccch-HHHHHHHHHHHHHHHHHhChhhHHh--hhHHHHHHHHHhCCC----------------------cHHHHHHHHHH
Q 000156 905 YDSN-KNLVMATLITLGAVASAMGPAVEKS--SKGVLSDILKCLGDN----------------------KKHMRECTLTV 959 (2015)
Q Consensus 905 ~DsN-~~V~~~Al~~l~~La~alg~~f~~~--~~~llp~ll~~L~D~----------------------k~~Vr~aa~~a 959 (2015)
.+.+ ..++..|+.+++.|+.. ...... -..++|.++..|.+. ...|+.++..+
T Consensus 362 ~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~a 439 (644)
T 2z6h_A 362 HPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 439 (644)
T ss_dssp STTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHH
Confidence 7764 68999999999988742 222111 234778887777653 34567777777
Q ss_pred HHHHHHhc------CchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC-Ch--hhhHHHHHhhcCCCChHHHH
Q 000156 960 LDAWLAAV------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DA--AHLLKPASIAMTDKSSDVRK 1030 (2015)
Q Consensus 960 L~~i~~~~------gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~-~~--~~ll~pl~~~L~D~~~~VR~ 1030 (2015)
|..++... .-...++.+...|.+. ++.++..++..|..... ..... .+ ...+.+|..++.|.+++||.
T Consensus 440 L~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~l~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~ 516 (644)
T 2z6h_A 440 LHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVAT 516 (644)
T ss_dssp HHHHTTSHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred HHHHhcCHHHHHHHHhCCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHc-CHHHHHHHHHcCChhHHHHHHcCCCHHHHH
Confidence 77554321 1134577788888765 47788887777665432 11000 01 12355688889999999999
Q ss_pred HHHHHHHHHHHHcCh
Q 000156 1031 AAEACIVEILRAGGQ 1045 (2015)
Q Consensus 1031 aA~~~L~~l~~~~G~ 1045 (2015)
+|..+|..+...-+.
T Consensus 517 ~A~~aL~~l~~~~~~ 531 (644)
T 2z6h_A 517 YAAAVLFRMSEDKPQ 531 (644)
T ss_dssp HHHHHHHHHTTTSCH
T ss_pred HHHHHHHHHhccCcH
Confidence 999999887665543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-05 Score=107.89 Aligned_cols=487 Identities=13% Similarity=0.060 Sum_probs=284.2
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhc--C--CC
Q 000156 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAG--C--LN 400 (2015)
Q Consensus 327 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdk-k~~V~~aa~~aL~al~~~~--~--~~ 400 (2015)
++.|.+.+.+.+..++..|+.+|+.|+..-.....-. ...+++.|++.+.+. ...++..+..+|..+.... . ..
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 4555566778899999999999999997543221111 236789999999865 7888888888888765320 0 00
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 401 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 401 l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
-...++.+...+++.++.++..++..|..+....... .... -...+|.|+++|.+.++.++.++..+|..+.. +..
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~-~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~ 172 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQ 172 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH-HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh-HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh--cCc
Confidence 0246788889999999999999999999887654322 1111 25689999999999999999999999987764 322
Q ss_pred HHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q 000156 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (2015)
Q Consensus 480 ~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~ 559 (2015)
.....+-.... ...+.+.+...
T Consensus 173 ~~~~~i~~~g~--v~~Lv~lL~~~-------------------------------------------------------- 194 (644)
T 2z6h_A 173 ESKLIILASGG--PQALVNIMRTY-------------------------------------------------------- 194 (644)
T ss_dssp HHHHHHHHTTH--HHHHHHHHTTC--------------------------------------------------------
T ss_pred HHHHHHHHcCC--hHHHHHHHHcC--------------------------------------------------------
Confidence 11111110000 00111111000
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHH
Q 000156 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSV 639 (2015)
Q Consensus 560 ~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~ 639 (2015)
+.+++...+ ..++..|... -..|.. ++.. ...
T Consensus 195 ------------------------------~~~~~~~~a-----~~~L~nLs~~-~~~~~~-------l~~~-----g~l 226 (644)
T 2z6h_A 195 ------------------------------TYEKLLWTT-----SRVLKVLSVC-SSNKPA-------IVEA-----GGM 226 (644)
T ss_dssp ------------------------------CCHHHHHHH-----HHHHHHHTTC-TTHHHH-------HHHT-----THH
T ss_pred ------------------------------ChHHHHHHH-----HHHHHHHhcC-cccHHH-------HHHC-----CCH
Confidence 001110000 0111112110 011100 0000 012
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhCh--
Q 000156 640 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-- 715 (2015)
Q Consensus 640 ~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~-- 715 (2015)
+.|+.+ +.+.+..++..++.+|..+....+.. .....+++.|+.-+.+ ..++..|..+|..++.....
T Consensus 227 ~~L~~l------l~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~ 298 (644)
T 2z6h_A 227 QALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298 (644)
T ss_dssp HHHHTT------TTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHH------HhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 223332 34556778888888888887643322 1234567777776654 56888888888888763211
Q ss_pred -----hHHHHHHHHHhhhCC-ChhHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCCc-hhHHHHHHHHH
Q 000156 716 -----GFIFERLYKIMKDHK-NPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSA-AATRNATIKLL 783 (2015)
Q Consensus 716 -----~~Vl~~L~~~l~~~K-npKv~~~~l~~L~~li~~fG~~~-----l~~k~li~~l~~~gL~~sn-~~VR~aA~~ll 783 (2015)
.-+++.|+..+.... .+.++..++..|..+....+... +--...++.+..+ |.+.+ +.||.+|..++
T Consensus 299 ~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L 377 (644)
T 2z6h_A 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLI 377 (644)
T ss_dssp HHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT-TSTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH-hCccCchHHHHHHHHHH
Confidence 114566666654333 48999999999888853222100 0001356677777 88775 79999999999
Q ss_pred HHHHHHhChhHHhhh--hhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHh
Q 000156 784 GALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS 861 (2015)
Q Consensus 784 ~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~ 861 (2015)
..|.. ++.....+ .+.-|.+.+.+......++.+..-+ . ..+ ++..
T Consensus 378 ~nLa~--~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~a----------l------~n~-----~~~~--------- 425 (644)
T 2z6h_A 378 RNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG----------G------TQQ-----QFVE--------- 425 (644)
T ss_dssp HHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-------------------------------CC---------
T ss_pred HHHcc--CHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhc----------c------ccc-----hhcc---------
Confidence 88864 33322222 4566777777766544433211000 0 000 0000
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhh--HHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVL 938 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~--~ll 938 (2015)
+..+..++..++..|..+.... ...... -...++.|...|.+.+..|+..|+.++..++.. ++....+. ..+
T Consensus 426 -~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l 500 (644)
T 2z6h_A 426 -GVRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGAT 500 (644)
T ss_dssp -SSCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCH
T ss_pred -cccHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCh
Confidence 0112345566666776554311 000000 134678888889999999999999999888732 33333222 246
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000156 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 939 p~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2015)
+.+...+.+.++.||..|..+|..+....+
T Consensus 501 ~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 501 APLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 788899999999999999999988766543
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-05 Score=101.91 Aligned_cols=609 Identities=14% Similarity=0.117 Sum_probs=361.1
Q ss_pred ccCChHHHHHHHHHHHHHhcC----CCCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHH
Q 000156 295 KATKWSERKDAVAELTKLAST----KRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLL 368 (2015)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~----~ki~~~~y~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ll 368 (2015)
.+.+-..|..|+..|.-|+.. .+|...+ -+..|.+.+.+ .|.-++..|++++..|+++=+...... -..=+
T Consensus 18 ~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~---~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~ 94 (810)
T 3now_A 18 LATPIDKRRAAANNLVVLAKEQTGAELLYKDH---CIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGV 94 (810)
T ss_dssp SCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred cccCHHHHHHHHhhceeeeccccchHHHHhCc---hHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCH
Confidence 455666777888888777631 2222221 24456666664 889999999999999998654332222 22335
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHh--cCC-----------------ChHhHHHHHHHHhhcCC--hHHHHHHHHHH
Q 000156 369 PVLLEKLKEKKPTVAESLTQTLQAMHKA--GCL-----------------NLVDVVEDVKTSVKNKV--PLVRSLTLNWV 427 (2015)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~--~~~-----------------~l~~il~~l~~~L~~Kn--p~vR~~~l~~L 427 (2015)
|.++..+..+...+..++..++..++.. +.. .++.++..++..+.+++ ...|-.+++.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~ 174 (810)
T 3now_A 95 PWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELI 174 (810)
T ss_dssp HHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHH
Confidence 6777777788888899999999888866 110 13344555666666655 79999999999
Q ss_pred HHHHHhcChh---HH-H-HhhhhHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHHHhCchH-HHHHHHhccHHHH
Q 000156 428 TFCIETSSKA---AV-L-KVHKDYVPICMECLNDG--------TPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRR 493 (2015)
Q Consensus 428 ~~~l~~~~~~---~l-~-~~l~~l~p~l~k~L~Ds--------~~~VR~aA~~al~~l~~~~Ge~~-~~~~l~~Ld~~~~ 493 (2015)
.+-+.+.... .+ . ..++.++.+... +.+. .+++|..|.-|+..++.-.+.+. -+.|-
T Consensus 175 ~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~-~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-------- 245 (810)
T 3now_A 175 TRNVHYTALEWAERLVEIRGLCRLLDVCSE-LEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFT-------- 245 (810)
T ss_dssp HHHTTCTTTTHHHHHHHTTHHHHHHHHHTC-CSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHH--------
T ss_pred HHhCCccccccccchhhHhhHHHHHHHHhc-CccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHH--------
Confidence 8887554311 11 1 133444433222 2332 67899999999999999888432 12222
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccc-cccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000156 494 NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK-SAAS-MLSGKRPVSAAPASKKGGPVKPSAKKDGSGK 571 (2015)
Q Consensus 494 kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~s-~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~ 571 (2015)
+.+.+++...-. .+. . . ..++. ++-+ .++ |
T Consensus 246 ~~~~~~~~~~~~-----~~~------------~---~-~~~~a~~alt~i~~-------------------g-------- 277 (810)
T 3now_A 246 DQIDEYIKDKLL-----APD------------M---E-SKVRVTVAITALLN-------------------G-------- 277 (810)
T ss_dssp HHHHHHHHHHHS-----SCC------------H---H-HHHHHHHHHHHHHS-------------------S--------
T ss_pred HHHHHHHHHHhc-----cCC------------h---H-hHHHHHHHHHHHhc-------------------C--------
Confidence 222333321000 000 0 0 00000 0000 000 0
Q ss_pred CcCCCCCCCCCCCCCCCCCHHHHHHHh-hccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCC
Q 000156 572 QETSKLTEAPEDVEPSEMSLEEIESRL-GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP 650 (2015)
Q Consensus 572 ~~~s~~~~~~~~~~~~~~s~ee~e~~~-~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~p 650 (2015)
.++...... .+-+-+.++..+.|.+-..+..|++.+..........+...+.-+.+|..
T Consensus 278 ------------------~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~-- 337 (810)
T 3now_A 278 ------------------PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKR-- 337 (810)
T ss_dssp ------------------SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHH--
T ss_pred ------------------CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHH--
Confidence 011111111 11223678899999999999999999987654321111001111133321
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHc------CCCchhHHHHHHHHHHhhhcc----hhhhHHHHHHHHHHHhhhC------
Q 000156 651 GWSEKNVQVQQQVIEVINYLAATA------TKFPKKCVVLCLLGISERVAD----IKTRAHAMKCLTTFSEAVG------ 714 (2015)
Q Consensus 651 g~~DsN~qV~~~~Le~l~~l~~~~------~~~~~~~~~~il~~LveKlgD----~K~r~~a~~~L~~l~e~~~------ 714 (2015)
.++..+..++..++-.|..+.... ..|....+..+++.++.-+.+ ..++..|.++|..++....
T Consensus 338 Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv 417 (810)
T 3now_A 338 LYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLI 417 (810)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 134445566677777777776321 223333455666666665554 4578888888888764221
Q ss_pred -hhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC---------------CC------C----hh---------hH
Q 000156 715 -PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---------------HL------K----LK---------DL 759 (2015)
Q Consensus 715 -~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~---------------~l------~----~k---------~l 759 (2015)
-.-+++.|+..+ .+.++.++.+++..|.++....-.. .+ + ++ ..
T Consensus 418 ~d~g~Ip~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGa 496 (810)
T 3now_A 418 EDKASIHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGI 496 (810)
T ss_dssp HCHHHHHHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTH
T ss_pred HccchHHHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcC
Confidence 112456666665 5678999999999999998743100 00 0 11 24
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCC
Q 000156 760 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (2015)
Q Consensus 760 i~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~ 839 (2015)
++.+..+ +.+.++.||..|..+|..|.. .+..+..+ -+ .+
T Consensus 497 Vp~LV~L-L~s~s~~vqe~Aa~aL~NLA~--d~~~r~~V-----------v~-------~G------------------- 536 (810)
T 3now_A 497 TTALCAL-AKTESHNSQELIARVLNAVCG--LKELRGKV-----------VQ-------EG------------------- 536 (810)
T ss_dssp HHHHHHH-HTCCCHHHHHHHHHHHHHHHT--SHHHHHHH-----------HH-------TT-------------------
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHHcC--CHHHHHHH-----------HH-------CC-------------------
Confidence 5666666 888899999999998887742 11122111 10 00
Q ss_pred CCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCC-CC-ChhhHHHHHHhccc-cchHHHHHHHH
Q 000156 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ-PA-GTGELFGGLRGRLY-DSNKNLVMATL 916 (2015)
Q Consensus 840 ~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~-~~-~~~eL~~~L~~rL~-DsN~~V~~~Al 916 (2015)
..+.|+..+.+...+.|..|...|..++...++.+. .. ...+.++.|...|. |.+...+..|+
T Consensus 537 --------------aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl 602 (810)
T 3now_A 537 --------------GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602 (810)
T ss_dssp --------------HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHH
T ss_pred --------------CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHH
Confidence 123455666666677899999999999875433221 11 11346788888885 33444456788
Q ss_pred HHHHHHHHHhChhhH-Hhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCCh
Q 000156 917 ITLGAVASAMGPAVE-KSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGA 987 (2015)
Q Consensus 917 ~~l~~La~alg~~f~-~~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p 987 (2015)
.+|..|+..- .+.. ..+ ...+|.++..+.+.+..|+.+|..+|..++..-. -...++.+...+.+. +.
T Consensus 603 ~AL~NLa~~~-d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~--d~ 679 (810)
T 3now_A 603 MALTNLASMN-ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE--DE 679 (810)
T ss_dssp HHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS--SH
T ss_pred HHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC--CH
Confidence 8888888542 1222 222 2468999999999999999999999998874311 124567777777765 46
Q ss_pred hHHHHHHHHHHHHhccCCC-CCCh---hhhHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000156 988 EGRKDLFDWLSKQLTGLSG-FPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~-~~~~---~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~ 1041 (2015)
.+|.+++..|+-.-..... ...+ ...+++|+..|.+.+.+||+.|..++..+..
T Consensus 680 ~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 680 ETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 7888877666543321221 0111 3467789999999999999999999988765
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.2e-05 Score=100.21 Aligned_cols=670 Identities=12% Similarity=0.079 Sum_probs=359.4
Q ss_pred hhHHHHHHHHHHHHH-hhhhhhhH-----HHHHHHHhhc-CChhhHHHHHHHHHHHHHHhCCCCcC-hhHH-Hhhhhhhh
Q 000156 107 PKTVEKAQAVFMLWV-ELEAVDVF-----LDVMEKAIKN-KVAKAVVPAIDVMFQALSEFGAKIIP-PKRI-LKMLPELF 177 (2015)
Q Consensus 107 ~~~k~~a~~~ll~~~-E~~~~~~v-----~~~L~~~~~~-KnpKv~~~~l~~L~~~l~~fG~~~i~-~k~i-l~~l~~ll 177 (2015)
..-|++|.+=|+.+. |-.+.+.+ +..|...+.+ ||+.++.+|+.+|.++....-..... ++.+ +++++.++
T Consensus 22 ~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 101 (810)
T 3now_A 22 IDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVL 101 (810)
T ss_dssp SHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHH
Confidence 334566655444444 21223322 3455666677 99999999999999887643221100 1111 46788999
Q ss_pred cCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHH----HHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccC
Q 000156 178 DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMK----KELEVELVNVSGTARPTRKIRAEQDKELGQELISED 253 (2015)
Q Consensus 178 ~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~----keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~ 253 (2015)
...+..+=.++..+++.++.-+-.. .+... .+--+... ++|+..+..+-... ..|.+ +...+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-~~~~r~~~------- 170 (810)
T 3now_A 102 DQKHENCVSTAQFCLQTILNALSGL-KNKPD-SKPDKELCTRNNREIDTLLTCLVYSI-TDRTI-SGAARDGV------- 170 (810)
T ss_dssp HCCSTTHHHHHHHHHHHHHHHHHTC-CSSTT-CCCCHHHHHHTHHHHHHHHHHHHHHH-TCTTS-CHHHHHHH-------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhcc-ccccc-cCCcHHHHhhhhhHHHHHHHHHHHHh-hcccc-ChhhHHHH-------
Confidence 9999999999999998888666310 10100 11111111 22222211110000 00000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccc-cCcch--hhhhhhccCChHHHHHHHHHHHHHhc-CCCC-CCCChHHHHH
Q 000156 254 VGPGPSEESTADVPPEIDEYELVDPVDILT-PLEKS--GFWEGVKATKWSERKDAVAELTKLAS-TKRI-APGDFTEVCR 328 (2015)
Q Consensus 254 ~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~-kl~~~--~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki-~~~~y~~l~~ 328 (2015)
+ +++- -+|.. .+.. .|.++ .+|..|...+. .|.+ .++.|
T Consensus 171 ----------------~---------~~~~~~~~~~~~~~~~-----~~~~~-~g~~~~l~v~~~~~~~~~~~~~----- 214 (810)
T 3now_A 171 ----------------I---------ELITRNVHYTALEWAE-----RLVEI-RGLCRLLDVCSELEDYKYESAM----- 214 (810)
T ss_dssp ----------------H---------HHHHHHTTCTTTTHHH-----HHHHT-THHHHHHHHHTCCSSSCCSSCC-----
T ss_pred ----------------H---------HHHHHhCCcccccccc-----chhhH-hhHHHHHHHHhcCccccccccC-----
Confidence 0 0000 00000 0111 15553 46777766653 2322 11111
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHhh-----hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---C--
Q 000156 329 TLKKLITDVNIAVAVEAIQAIGNLARGLR-----THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---C-- 398 (2015)
Q Consensus 329 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~-----~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~---~-- 398 (2015)
. .-...+..|.-|+..+-..|+ ..|...+..++.. +|......-.-.+..++.+++.-. +
T Consensus 215 ------~-~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~alt~i~~g~~~~~~~ 284 (810)
T 3now_A 215 ------D-ITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKD---KLLAPDMESKVRVTVAITALLNGPLDVGNQ 284 (810)
T ss_dssp ------C-CCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHH---HHSSCCHHHHHHHHHHHHHHHSSSHHHHHH
T ss_pred ------C-CChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH---HhccCChHhHHHHHHHHHHHhcCCHHHHHH
Confidence 1 112356677777777777776 4444444444444 443333333334466677666430 0
Q ss_pred -CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000156 399 -LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 399 -~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G 477 (2015)
..-+..++.++..+.+.++.++..++..+..+... +..-....+.-+|.|...+...+..+|.-|.-+|+.+....+
T Consensus 285 ~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~ 362 (810)
T 3now_A 285 VVAREGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGG 362 (810)
T ss_dssp HHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTT
T ss_pred HHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 00135678888889999999999998888875332 221112234445999999998999999988888877764333
Q ss_pred chHHHHHHHh--ccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCC
Q 000156 478 MRPLERSIEK--LDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASK 555 (2015)
Q Consensus 478 e~~~~~~l~~--Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~ 555 (2015)
...-.+.+.. +.+. -+.+...+...+.. + .+.+.+...+
T Consensus 363 ~d~~~~~~~~g~i~~L-v~~l~~lL~~~~~d-------------------~------~v~~~AveaL------------- 403 (810)
T 3now_A 363 QDAAIRPFGDGAALKL-AEACRRFLIKPGKD-------------------K------DIRRWAADGL------------- 403 (810)
T ss_dssp TTTSCCSSTTTHHHHH-HHHHHHHHHCSSCC-------------------S------SHHHHHHHHH-------------
T ss_pred cCccccchhhccHHHH-HHHHHHHhcCCCCC-------------------H------HHHHHHHHHH-------------
Confidence 1100000100 0000 01122222210000 0 0000000000
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhh-ccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccc
Q 000156 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLG-SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN 634 (2015)
Q Consensus 556 k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~-~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~ 634 (2015)
... ...++.-+.... .-+-+.+++.|.+.+-.....++..|.++..+.+.
T Consensus 404 -------------------ayL----------S~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 404 -------------------AYL----------TLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp -------------------HHH----------TTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred -------------------HHH----------hCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 000 001122221111 11235667777777777777888888777654210
Q ss_pred c-----------------------c---------------hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000156 635 L-----------------------D---------------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (2015)
Q Consensus 635 ~-----------------------~---------------~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (2015)
. + .....|+.++ +..+..|+..+..+|..++.. ..
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL------~s~s~~vqe~Aa~aL~NLA~d-~~ 527 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA------KTESHNSQELIARVLNAVCGL-KE 527 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHH------TCCCHHHHHHHHHHHHHHHTS-HH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHH------cCCCHHHHHHHHHHHHHHcCC-HH
Confidence 0 0 0112333333 344567889999999888742 11
Q ss_pred CchhHH--HHHHHHHHhhhc--chhhhHHHHHHHHHHHhhhChhHH---------HHHHHHHhhhCCChhHHHHHHHHHH
Q 000156 677 FPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFI---------FERLYKIMKDHKNPKVLSEGILWMV 743 (2015)
Q Consensus 677 ~~~~~~--~~il~~LveKlg--D~K~r~~a~~~L~~l~e~~~~~~V---------l~~L~~~l~~~KnpKv~~~~l~~L~ 743 (2015)
.+..+ .-++|.|+.-+. +.+.+..|..+|..++....++.+ ++.|+..+....+...+.+++..|.
T Consensus 528 -~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~ 606 (810)
T 3now_A 528 -LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606 (810)
T ss_dssp -HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred -HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 11222 125777776654 457888999999988876555443 3344444322224455668888888
Q ss_pred HHHHHh---CCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000156 744 SAVEDF---GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (2015)
Q Consensus 744 ~li~~f---G~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~ 820 (2015)
++...- ....+. ...++.+..+ +.+.++.||.+|..+++.|.. +++.... |.. +.
T Consensus 607 NLa~~~d~~~~~Ii~-aG~l~~Lv~L-L~s~~~~Vq~~A~~~L~NLa~--~~~~~~~---------------~v~--~~- 664 (810)
T 3now_A 607 NLASMNESVRQRIIK-EQGVSKIEYY-LMEDHLYLTRAAAQCLCNLVM--SEDVIKM---------------FEG--NN- 664 (810)
T ss_dssp HHTTSCHHHHHHHHH-TTHHHHHHHH-HHSCCTTHHHHHHHHHHHHTT--SHHHHHH---------------HHS--SS-
T ss_pred HHhcCCHHHHHHHHH-cCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhC--ChHHHHH---------------HHh--cc-
Confidence 776410 000000 1245566666 788999999999999998853 3332111 110 00
Q ss_pred CCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh-hhHHHH
Q 000156 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGG 899 (2015)
Q Consensus 821 ~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~-~eL~~~ 899 (2015)
...+-|+..+.+.+-.+|.+|.-.|..+.......++.-.- ...++.
T Consensus 665 --------------------------------g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~ 712 (810)
T 3now_A 665 --------------------------------DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDI 712 (810)
T ss_dssp --------------------------------SHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHH
T ss_pred --------------------------------CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHH
Confidence 01245777788888999999999999988631111111000 346788
Q ss_pred HHhccccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHh
Q 000156 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDN---KKHMRECTLTVLDAWLAA 966 (2015)
Q Consensus 900 L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~--~~llp~ll~~L~D~---k~~Vr~aa~~aL~~i~~~ 966 (2015)
|...|.+.+..++..|+.++..++.+ +.+...++ ...++++...+.++ +..+++.|.++|..+...
T Consensus 713 Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 713 LHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 88889999999999999999999873 33333332 23788888888765 678999999999988764
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-05 Score=103.39 Aligned_cols=482 Identities=13% Similarity=0.063 Sum_probs=272.2
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhc--C--C
Q 000156 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAG--C--L 399 (2015)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdk-k~~V~~aa~~aL~al~~~~--~--~ 399 (2015)
.++.|.+.+.+.+..++..|+.+|..|+..-...-.-. ....++.|++.+... ...++..+..+|..+.... . .
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 46666677788899999999999999986432111111 236889999998754 7888888888888875320 0 0
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 400 ~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
.-...++.+...+++.++.++..++..|..+........-.-.-...+|.+++++.+.++++|..+..+|..+.. +..
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~--~~~ 175 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQ 175 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh--CCH
Confidence 012467888889999999999999999998776533211000114578999999999999999999999986653 332
Q ss_pred HHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q 000156 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (2015)
Q Consensus 480 ~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~ 559 (2015)
.....+-.-+. ...+.+.+...
T Consensus 176 ~~~~~i~~~~~--i~~L~~ll~~~-------------------------------------------------------- 197 (529)
T 1jdh_A 176 ESKLIILASGG--PQALVNIMRTY-------------------------------------------------------- 197 (529)
T ss_dssp HHHHHHHHTTH--HHHHHHHHHHC--------------------------------------------------------
T ss_pred HHHHHHHHCCC--HHHHHHHHHhC--------------------------------------------------------
Confidence 21111111000 00111111100
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcc-CCHHHHHHHHHHHHHHHHhccccchH
Q 000156 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQS 638 (2015)
Q Consensus 560 ~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s-~~Wk~Rl~a~e~L~~~v~~~~~~~~~ 638 (2015)
+.++....+ ..++..|.. ..-+.. ++.. ..
T Consensus 198 ------------------------------~~~~~~~~a-----~~~L~~l~~~~~~~~~---------~~~~-----g~ 228 (529)
T 1jdh_A 198 ------------------------------TYEKLLWTT-----SRVLKVLSVCSSNKPA---------IVEA-----GG 228 (529)
T ss_dssp ------------------------------CCHHHHHHH-----HHHHHHHTTSTTHHHH---------HHHT-----TH
T ss_pred ------------------------------ChHHHHHHH-----HHHHHHHhcCcccHHH---------HHHC-----CC
Confidence 000000000 011111111 111100 0000 01
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhC--
Q 000156 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG-- 714 (2015)
Q Consensus 639 ~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~-- 714 (2015)
.+.++.+ +.+.+..+...++.++..+....+... ....++|.|+.-+.+ ..++..+..+|..++....
T Consensus 229 ~~~L~~l------l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 300 (529)
T 1jdh_A 229 MQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300 (529)
T ss_dssp HHHHHTT------TTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHH------HhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 2223332 345567788888888888776433221 234567777776654 5678888888887765311
Q ss_pred h-----hHHHHHHHHHhhh-CCChhHHHHHHHHHHHHHHHhCCC-----CCChhhHHHHHHhcCCCCCc-hhHHHHHHHH
Q 000156 715 P-----GFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSA-AATRNATIKL 782 (2015)
Q Consensus 715 ~-----~~Vl~~L~~~l~~-~KnpKv~~~~l~~L~~li~~fG~~-----~l~~k~li~~l~~~gL~~sn-~~VR~aA~~l 782 (2015)
- .-+++.++..+.. ..++.++..++..|.++....+.. .+--...++.+..+ +.+.+ +.||..|..+
T Consensus 301 ~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l-L~~~~~~~v~~~a~~~ 379 (529)
T 1jdh_A 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGL 379 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH-hccccchHHHHHHHHH
Confidence 0 1145666666543 345899999999998875321110 00001235566666 88776 6999999999
Q ss_pred HHHHHHHhChhHHhhh--hhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHH
Q 000156 783 LGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (2015)
Q Consensus 783 l~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~ 860 (2015)
++.+.. ++.....+ .++-|.+...+.....+++.+..-. +. . . .+....
T Consensus 380 l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~----l~------------n--~---~~~~~~------ 430 (529)
T 1jdh_A 380 IRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG----GT------------Q--Q---QFVEGV------ 430 (529)
T ss_dssp HHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC--------------------------------CBTTB------
T ss_pred HHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcc----cC------------c--h---hhhccc------
Confidence 888864 33333323 3566777777766544433211000 00 0 0 000000
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhh--hH
Q 000156 861 SLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KG 936 (2015)
Q Consensus 861 ~l~d~~Wk~R~eale~L~~ll~~a~--~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~--~~ 936 (2015)
....++..++..+..++.... ..+. -...++.|...+.|.+..|+..|+.++..++. .+.....+ ..
T Consensus 431 ----~~~~i~~~~~~al~~L~~~~~~~~~l~---~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~--~~~~~~~i~~~~ 501 (529)
T 1jdh_A 431 ----RMEEIVEGCTGALHILARDVHNRIVIR---GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEG 501 (529)
T ss_dssp ----CHHHHHHHHHHHHHHHTTSHHHHHHHH---HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SHHHHHHHHHTT
T ss_pred ----cHHHHHHHHHHHHHHHhcCchHHHHHh---ccCCccHHHHHHcCCchHHHHHHHHHHHHHhc--CHHHHHHHHHcC
Confidence 011233345555555432100 0011 02356788889999999999999999888762 12222222 13
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAW 963 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i 963 (2015)
.++.+...+.+.++.|+..|..+|..+
T Consensus 502 ~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 502 ATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 567888888899999999988888654
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.58 E-value=0.00013 Score=94.46 Aligned_cols=387 Identities=12% Similarity=0.046 Sum_probs=220.2
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHhHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcC-h
Q 000156 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSS-K 436 (2015)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~-----~~l~~il~~l~~~L~~-Knp~vR~~~l~~L~~~l~~~~-~ 436 (2015)
....+|.+++.+++..+.+++.+..+|..+..... ......++.+...|.+ .++.++..++..|..+..... .
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 45678999999999999999999999998875310 0113567888888875 489999999999887533211 1
Q ss_pred hHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000156 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARV 516 (2015)
Q Consensus 437 ~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~ 516 (2015)
..+. -...+|.++.++.+.+++||..|..+|+.+...-.+. +..+.+ .+
T Consensus 95 ~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~---~g------------- 143 (529)
T 1jdh_A 95 LAIF--KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------------KMAVRL---AG------------- 143 (529)
T ss_dssp HHHH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH-------------HHHHHH---HT-------------
T ss_pred HHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch-------------HHHHHH---cC-------------
Confidence 1111 1358899999999999999999999998887654321 111111 00
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHH
Q 000156 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (2015)
Q Consensus 517 ~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 596 (2015)
T Consensus 144 -------------------------------------------------------------------------------- 143 (529)
T 1jdh_A 144 -------------------------------------------------------------------------------- 143 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHH
Q 000156 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (2015)
Q Consensus 597 ~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~------~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l 670 (2015)
.-+.++..|.+.+|+.|..+...|..+..+..+. ....+.++.++... ....+...+..++..+
T Consensus 144 -----~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 144 -----GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-----TYEKLLWTTSRVLKVL 213 (529)
T ss_dssp -----HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC-----ChHHHHHHHHHHHHHH
Confidence 0023445556666777776666665443211000 00122233333210 0111111222222111
Q ss_pred HHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhC
Q 000156 671 AATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750 (2015)
Q Consensus 671 ~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG 750 (2015)
.. ++..+.. +.+. -+++.+++.+ .+.++.++..++..|..+.....
T Consensus 214 ~~----------------------~~~~~~~-------~~~~----g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 214 SV----------------------CSSNKPA-------IVEA----GGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp TT----------------------STTHHHH-------HHHT----THHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCT
T ss_pred hc----------------------CcccHHH-------HHHC----CCHHHHHHHH-hCCChHHHHHHHHHHHHHhcCCh
Confidence 10 1111111 1111 1345555554 45688888888888888776433
Q ss_pred CCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccC
Q 000156 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (2015)
Q Consensus 751 ~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2015)
. ......+++.+..+ +.+.++.||..|..++..|... ++.....+ .+ ..
T Consensus 260 ~-~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~-----------~~----~~------------- 308 (529)
T 1jdh_A 260 K-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCN-NYKNKMMV-----------CQ----VG------------- 308 (529)
T ss_dssp T-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTT-CHHHHHHH-----------HH----TT-------------
T ss_pred h-hHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH-----------HH----cC-------------
Confidence 2 22346788888888 9999999999999999887432 11111111 00 00
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcC--CCChHHHHHHHHHHHHHHHhccccC---CCCC-hhhHHHHHHhcc
Q 000156 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLE--SPDWKVRLESIEAVNKILEEANKRI---QPAG-TGELFGGLRGRL 904 (2015)
Q Consensus 831 ~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~--d~~Wk~R~eale~L~~ll~~a~~~I---~~~~-~~eL~~~L~~rL 904 (2015)
..+.+++.+. +.+|.+|..|+..|..+.... ... .... -...++.|...|
T Consensus 309 -----------------------~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~i~~~~~i~~L~~lL 364 (529)
T 1jdh_A 309 -----------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRH-QEAEMAQNAVRLHYGLPVVVKLL 364 (529)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS-TTHHHHHHHHHHTTCHHHHHHTT
T ss_pred -----------------------ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHcCChhHHHHHh
Confidence 1123334343 235888889988888775310 000 0000 023467888888
Q ss_pred ccch-HHHHHHHHHHHHHHHHHhChhhHHh-h-hHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000156 905 YDSN-KNLVMATLITLGAVASAMGPAVEKS-S-KGVLSDILKCLGDNKKHMRECTLTVLDA 962 (2015)
Q Consensus 905 ~DsN-~~V~~~Al~~l~~La~alg~~f~~~-~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~ 962 (2015)
.+.+ ..++..++.+++.++. ++..... . ..++|.++..|.+....+|..+.-++..
T Consensus 365 ~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 365 HPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp STTCCHHHHHHHHHHHHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred ccccchHHHHHHHHHHHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence 8776 5899999999998884 3332222 2 2578999999988877788766555543
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.55 E-value=0.017 Score=81.41 Aligned_cols=505 Identities=12% Similarity=0.066 Sum_probs=269.0
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcc----hhhhHh-HHH
Q 000156 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF----SGSSRF-LLP 369 (2015)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f----~~~~~~-llp 369 (2015)
-+.+=..|++|-+.|..+-+.|.. +.-+...|.. +.+..++..|+.++....+.--..+ ..+++. ++.
T Consensus 26 ~~p~~~~r~~Ae~~L~~~~~~p~~----~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~ 98 (1049)
T 3m1i_C 26 YQGSGVQQKQAQEILTKFQDNPDA----WQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVG 98 (1049)
T ss_dssp HHCCHHHHHHHHHHHHHHHHSTTG----GGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHhCchH----HHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHH
Confidence 344445799999889888665521 2223333322 5678899999999988876421222 223333 333
Q ss_pred HHHHHhccC-----cHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC---h----
Q 000156 370 VLLEKLKEK-----KPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS---K---- 436 (2015)
Q Consensus 370 ~LL~klkdk-----k~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~---~---- 436 (2015)
.+...-.+. .+.|+..+..++..++.. .....+.+++++...++ .++..+..++.+|..+.+... .
T Consensus 99 ~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~ 177 (1049)
T 3m1i_C 99 MIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMT 177 (1049)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSC
T ss_pred HHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 333222111 368899999999999887 22345789999998886 566667777777766553221 0
Q ss_pred --------hHHHHhhhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCch------HHHHHHHhc--cHHHHHHHHHH
Q 000156 437 --------AAVLKVHKDYVPICMECLNDG-TPEVRDAAFSVLAAIAKSVGMR------PLERSIEKL--DDVRRNKLSEM 499 (2015)
Q Consensus 437 --------~~l~~~l~~l~p~l~k~L~Ds-~~~VR~aA~~al~~l~~~~Ge~------~~~~~l~~L--d~~~~kkI~e~ 499 (2015)
..+...++.+...+..++++. ++++|.++.+|+..+...+.-. -+..++..+ ++.-+...-++
T Consensus 178 ~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~~a~~~ 257 (1049)
T 3m1i_C 178 QAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLKC 257 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCCHhHHHHHHHH
Confidence 223345677777788888654 5789999999998776544421 111111111 11111111122
Q ss_pred HhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCC
Q 000156 500 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTE 579 (2015)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~ 579 (2015)
+.... + .+.+
T Consensus 258 L~~i~--------------------------------------~-~~~~------------------------------- 267 (1049)
T 3m1i_C 258 LTEVS--------------------------------------N-LKIP------------------------------- 267 (1049)
T ss_dssp HHHHH--------------------------------------H-CCCC-------------------------------
T ss_pred HHHHH--------------------------------------h-CCCC-------------------------------
Confidence 11100 0 0000
Q ss_pred CCCCCCCCCCCHHHHHHHhhccCcHHHHhhh------------------ccCCHHHHHHHHHHHHHH-------HHhccc
Q 000156 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQL------------------KSAVWKERLEAISSLRQQ-------VEAVQN 634 (2015)
Q Consensus 580 ~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L------------------~s~~Wk~Rl~a~e~L~~~-------v~~~~~ 634 (2015)
+. . ......+..++ +.++..+ .+.++..+..-.+-+..+ +...+.
T Consensus 268 ------~~--~-~~~~~~~~~l~-~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 337 (1049)
T 3m1i_C 268 ------QD--N-DLIKRQTVLFF-QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDES 337 (1049)
T ss_dssp ------TT--C-HHHHHHHHHHH-HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred ------cc--h-hhHHHHHHHHH-HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChh
Confidence 00 0 00000000010 0111100 111121111111111111 111111
Q ss_pred cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc---C---CCchhHHHHHHHHHHhhhcc----------h--
Q 000156 635 LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---T---KFPKKCVVLCLLGISERVAD----------I-- 696 (2015)
Q Consensus 635 ~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~---~---~~~~~~~~~il~~LveKlgD----------~-- 696 (2015)
.......++.++..... ..+..|...++++|..+++.. + ......+..+++.++.++.- .
T Consensus 338 ~~~~l~~~l~~ll~~~~--~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e 415 (1049)
T 3m1i_C 338 LRELLLNAHQYLIQLSK--IEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGE 415 (1049)
T ss_dssp GHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSC
T ss_pred hHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCc
Confidence 11122223333321101 224567888999999988732 1 22345667777888877621 0
Q ss_pred ------------hhhHHHHHHHHHHHhhhChhHHHHHHHHHhh---h--CCChhHHHHHHHHHHHHHHHhCCCCC-C-hh
Q 000156 697 ------------KTRAHAMKCLTTFSEAVGPGFIFERLYKIMK---D--HKNPKVLSEGILWMVSAVEDFGVSHL-K-LK 757 (2015)
Q Consensus 697 ------------K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~---~--~KnpKv~~~~l~~L~~li~~fG~~~l-~-~k 757 (2015)
-.+..+.++|..++.. .+..++..+++.+. . ..+|+.+.+++..+..+.+..+...- . +.
T Consensus 416 ~~r~~~~d~d~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~ 494 (1049)
T 3m1i_C 416 IVREFVKESDTIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV 494 (1049)
T ss_dssp EEECSSCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred chHhhhccchHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH
Confidence 1244678888888854 44555555555431 2 46899999999888866543221100 1 23
Q ss_pred hHHHHHHhcCCC-----CCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCcc
Q 000156 758 DLIDFCKDTGLQ-----SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (2015)
Q Consensus 758 ~li~~l~~~gL~-----~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~ 832 (2015)
.+++.+..+ .. +..+.||..+..+++.+..|.... ..||..
T Consensus 495 ~v~~~l~~l-~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~-------------------------------- 540 (1049)
T 3m1i_C 495 TVIKDLLDL-TVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRT-------------------------------- 540 (1049)
T ss_dssp HHHHHHHHH-TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHH--------------------------------
T ss_pred HHHHHHHHH-HhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHH--------------------------------
Confidence 455555443 22 234566666777777766554321 011100
Q ss_pred ccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCC--------CCChhhHHHHHHhcc
Q 000156 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ--------PAGTGELFGGLRGRL 904 (2015)
Q Consensus 833 ~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~--------~~~~~eL~~~L~~rL 904 (2015)
+.+.++..+.+.+-++|..|...+..++..+...+. |. +.+++..|...+
T Consensus 541 ---------------------vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~-~~~il~~l~~~~ 598 (1049)
T 3m1i_C 541 ---------------------VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF-IQTIIRDIQKTT 598 (1049)
T ss_dssp ---------------------HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH-HHHHHHTHHHHH
T ss_pred ---------------------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcH-HHHHHHHHHHHH
Confidence 122455556677788899999999999987644432 33 467777776666
Q ss_pred ccchHHHHHHHHHHHHHHHHHhCh--hhHHhhhHHHHHHHHHhC
Q 000156 905 YDSNKNLVMATLITLGAVASAMGP--AVEKSSKGVLSDILKCLG 946 (2015)
Q Consensus 905 ~DsN~~V~~~Al~~l~~La~alg~--~f~~~~~~llp~ll~~L~ 946 (2015)
.+....-....+++++.++.+.+. .+.+|+..+++.++..+.
T Consensus 599 ~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~ 642 (1049)
T 3m1i_C 599 ADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWD 642 (1049)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 554333345668899999988883 477889999988876654
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.53 E-value=8.1e-06 Score=106.39 Aligned_cols=376 Identities=11% Similarity=0.119 Sum_probs=234.0
Q ss_pred cHHHHhhhccCCHHHHHHHHHHHHHHHHhccc--cch-----HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC
Q 000156 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 675 (2015)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~--~~~-----~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~ 675 (2015)
-+++++.+.|.+-..++.|+..+.+++..... .+. ....|+++|. .+.|..++..+..+|..++....
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~-----~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHcCCH
Confidence 36788999999999999999999988754221 111 1234555553 34567788888888888875321
Q ss_pred CCchhHH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhC--hhH-----HHHHHHHHhhhCC----ChhHHHHHHHH
Q 000156 676 KFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGF-----IFERLYKIMKDHK----NPKVLSEGILW 741 (2015)
Q Consensus 676 ~~~~~~~-~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~--~~~-----Vl~~L~~~l~~~K----npKv~~~~l~~ 741 (2015)
......+ .-++|.|+.-+.+ ..++..|..+|..++.... -+. ++..++..+.... ...+...++..
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 232 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 232 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence 1111111 1267888876655 4688999989988875321 111 2334444442211 12233344444
Q ss_pred HHHHHHHhCCC-C-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCC
Q 000156 742 MVSAVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (2015)
Q Consensus 742 L~~li~~fG~~-~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~ 819 (2015)
++.+...-... . ..+..+++.+..+ +.+.++.|+..|..+|..|...... ....+. .
T Consensus 233 L~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~~~~~------------~~~~v~----~---- 291 (529)
T 3tpo_A 233 LSNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNE------------RIEMVV----K---- 291 (529)
T ss_dssp HHHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHH------------HHHHHH----T----
T ss_pred HHHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhhhhhh------------hHHHHH----h----
Confidence 54444311111 1 1235678888888 9999999999998888766532110 000000 0
Q ss_pred CCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC-ChhhHHH
Q 000156 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFG 898 (2015)
Q Consensus 820 ~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~-~~~eL~~ 898 (2015)
..+.+.++..+.+.++.++..++..|..++... ...... .-...+.
T Consensus 292 --------------------------------~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~ 338 (529)
T 3tpo_A 292 --------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALA 338 (529)
T ss_dssp --------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGG
T ss_pred --------------------------------ccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHH
Confidence 003456777888899999999999999887421 100000 0123556
Q ss_pred HHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch-------
Q 000156 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD------- 970 (2015)
Q Consensus 899 ~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~-~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~------- 970 (2015)
.|...|.+.+..++..|+.+|+.|+..-....... -..++|.++..|.+....++..|..+|..++.....+
T Consensus 339 ~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~ 418 (529)
T 3tpo_A 339 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVH 418 (529)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77788888999999999999999875322222222 2358999999999999999999999999888654422
Q ss_pred -hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc---CCCCCChhhh------HHHHHhhcCCCChHHHHHHHHHHHHH
Q 000156 971 -KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 971 -~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~---~~~~~~~~~l------l~pl~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
.+++.+...|.++ ++.++..++..|...+.. .+....+..+ +..|-.+..+.|.+|++.|...+..+
T Consensus 419 ~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 419 CGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3567788888765 577887777777655432 2211112222 22244455788999999988777654
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.52 E-value=5.3e-06 Score=107.63 Aligned_cols=376 Identities=11% Similarity=0.105 Sum_probs=233.0
Q ss_pred cHHHHhhhccCCHHHHHHHHHHHHHHHHhcc--ccch-----HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC
Q 000156 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQ--NLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 675 (2015)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~--~~~~-----~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~ 675 (2015)
-+++++.+.|.+-..++.|+..+.+++.... +.+. ....|+++|. .+.|..++..+.-+|..++....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~-----~~~~~~lq~~Aa~aL~nias~~~ 133 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTS 133 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCH
Confidence 3788999999999999999999998885422 1111 1234445442 24567788888888888875321
Q ss_pred CCchhHHH-HHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhC--hhH-----HHHHHHHHhhhC----CChhHHHHHHHH
Q 000156 676 KFPKKCVV-LCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGF-----IFERLYKIMKDH----KNPKVLSEGILW 741 (2015)
Q Consensus 676 ~~~~~~~~-~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~--~~~-----Vl~~L~~~l~~~----KnpKv~~~~l~~ 741 (2015)
......+. -.+|.|+.-+.+ ..++..|..+|..++.... -+. .+..++..+... ....+...++..
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 11111111 268888887765 4689999999998875321 111 233444444211 122334445555
Q ss_pred HHHHHHHhCCC-C-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCC
Q 000156 742 MVSAVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (2015)
Q Consensus 742 L~~li~~fG~~-~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~ 819 (2015)
++.+...-... . ..+..+++.+..+ +.+.++.|+..|..+|..|..... .....+. .
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~A~~aL~~L~~~~~------------~~~~~i~----~---- 272 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPN------------ERIEMVV----K---- 272 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSCH------------HHHHHHH----T----
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHHhhchh------------hhHHHHH----h----
Confidence 55554321111 1 1235688888888 999999999999988876642111 0000000 0
Q ss_pred CCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHH
Q 000156 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFG 898 (2015)
Q Consensus 820 ~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~ 898 (2015)
..+.+.++..+.+.++.++..++..|..++... ....... -...+.
T Consensus 273 --------------------------------~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~ 319 (510)
T 3ul1_B 273 --------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALA 319 (510)
T ss_dssp --------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGG
T ss_pred --------------------------------cccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchH
Confidence 013456778888999999999999999886421 0000000 023455
Q ss_pred HHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------
Q 000156 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-------- 969 (2015)
Q Consensus 899 ~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~-~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl-------- 969 (2015)
.|...|.+.+..++..|+.+++.|+..-....... -..++|.++..|.+....+|..|..+|..+......
T Consensus 320 ~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~ 399 (510)
T 3ul1_B 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399 (510)
T ss_dssp GCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 66777889999999999999999874322222222 235889999999999999999999999988875442
Q ss_pred hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc---CCCCCChhhhH------HHHHhhcCCCChHHHHHHHHHHHHH
Q 000156 970 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHLL------KPASIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 970 ~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~---~~~~~~~~~ll------~pl~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
..+++.+...|.++ ++.++..++..|...+.. .+....+..++ ..|-.+..+.|.+|++.|...+..+
T Consensus 400 ~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 400 CGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp TTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 23567788888765 577888777776655532 22111122222 2233445788999999888776544
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.51 E-value=0.0002 Score=94.89 Aligned_cols=241 Identities=11% Similarity=0.054 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHH
Q 000156 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (2015)
Q Consensus 733 Kv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (2015)
-|..+|+..+..+ +...--.+..+..+..+ +.++++++|-.|...+..+....+. . .+
T Consensus 308 aVl~ea~~~i~~l----~~~~~~~~~~~~~L~~~-L~~~~~niry~aL~~l~~l~~~~~~-~-~~--------------- 365 (621)
T 2vgl_A 308 AVLFEAISLIIHH----DSEPNLLVRACNQLGQF-LQHRETNLRYLALESMCTLASSEFS-H-EA--------------- 365 (621)
T ss_dssp HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH-SSCSCHHHHHHHHHHHHHHTTCTTT-H-HH---------------
T ss_pred HHHHHHHHHHHhc----CCcHHHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHHhccCc-H-HH---------------
Confidence 5666666655443 22110123455666677 8888999999999888776432210 0 00
Q ss_pred HhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcC-CCChHHHHHHHHHHHHHHHhccccCCCC
Q 000156 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPA 891 (2015)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~-d~~Wk~R~eale~L~~ll~~a~~~I~~~ 891 (2015)
+ ......++..+. |.+-.+|..+++.+..++.+.
T Consensus 366 ~--------------------------------------~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~------- 400 (621)
T 2vgl_A 366 V--------------------------------------KTHIETVINALKTERDVSVRQRAVDLLYAMCDRS------- 400 (621)
T ss_dssp H--------------------------------------HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-------
T ss_pred H--------------------------------------HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh-------
Confidence 0 011235666677 888889999999999887643
Q ss_pred ChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-c-
Q 000156 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L- 969 (2015)
Q Consensus 892 ~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-l- 969 (2015)
...+++..|...+.+.+..++..++..|+.+|....+.+..|+..++ +.+.+....+...+...+..++...+ +
T Consensus 401 Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll----~ll~~~~~~v~~ev~~~l~~ii~~~~~~~ 476 (621)
T 2vgl_A 401 NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTIL----NLIRIAGDYVSEEVWYRVIQIVINRDDVQ 476 (621)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHH----HHHHHHGGGSCSHHHHHHHHHHGGGCSCH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH----HHHHhhcccchHHHHHHHHHHHhCChhHH
Confidence 25788888888888888999999999999999888777776665544 33333333355555555555554443 2
Q ss_pred hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc-CCCCCC--hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000156 970 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG-LSGFPD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 970 ~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~-~~~~~~--~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~ 1045 (2015)
...+..+.+.+.++... ..=..+..|+.--+.. ....+. ..+.+..+...+.+.++.||..+-.++..+....++
T Consensus 477 ~~~~~~l~~~l~~~~~~-~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~ 554 (621)
T 2vgl_A 477 GYAAKTVFEALQAPACH-ENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE 554 (621)
T ss_dssp HHHHHHHHHHHTSSSCC-HHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHcCccch-HHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH
Confidence 22345566777654311 1111233465332221 111111 134566677788899999999999999988777654
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-05 Score=102.99 Aligned_cols=380 Identities=12% Similarity=0.118 Sum_probs=238.7
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CCh--HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000156 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDF--TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (2015)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~y--~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (2015)
+++.+.+.+.+-..+.+|+..++++++..+-.+ ... ..+++.|...|+ +.+..+...|+.+|..||.+-...-...
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 467888999999999999999999885322211 000 135778888887 6678899999999999996533222222
Q ss_pred hH-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHhhcCC-----hHHHHHHHHHHHHHH
Q 000156 364 SR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKV-----PLVRSLTLNWVTFCI 431 (2015)
Q Consensus 364 ~~-~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~------~il~~l~~~L~~Kn-----p~vR~~~l~~L~~~l 431 (2015)
+. ..+|.|+..+++....|++.+..||..+... +.... ..++.+...+...+ ..+...++..+..+.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d-~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 22 4799999999999999999999999998754 11111 23556666666433 234444444444443
Q ss_pred HhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCC
Q 000156 432 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511 (2015)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~ 511 (2015)
.......-......++|.|.+++.+.+++|+..|..+|..+... .. .....+ ...
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~~-----------~~~~~i---~~~--------- 273 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PN-----------ERIEMV---VKK--------- 273 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CH-----------HHHHHH---HTT---------
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--hh-----------hhHHHH---Hhc---------
Confidence 32221111123467899999999999999999988888655421 11 000111 000
Q ss_pred CCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCH
Q 000156 512 SSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL 591 (2015)
Q Consensus 512 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ 591 (2015)
T Consensus 274 -------------------------------------------------------------------------------- 273 (510)
T 3ul1_B 274 -------------------------------------------------------------------------------- 273 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHH--HHhc-CCCCcccHHHHHHHHHHHHH
Q 000156 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR--LVCM-LPGWSEKNVQVQQQVIEVIN 668 (2015)
Q Consensus 592 ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~--~L~~-~pg~~DsN~qV~~~~Le~l~ 668 (2015)
-+.+.++..|.+.++..+..++..|..++...+. ..+.++. .+.. ..-+.+.+..|+..++-+|.
T Consensus 274 ---------g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~---~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 274 ---------GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE---QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp ---------TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH---HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred ---------ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH---HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0013456677888888899998888877644221 1222222 1100 01246677788888888887
Q ss_pred HHHHHcCCCchhHH-HHHHHHHHhhhc--chhhhHHHHHHHHHHHhhhChhH--------HHHHHHHHhhhCCChhHHHH
Q 000156 669 YLAATATKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKVLSE 737 (2015)
Q Consensus 669 ~l~~~~~~~~~~~~-~~il~~LveKlg--D~K~r~~a~~~L~~l~e~~~~~~--------Vl~~L~~~l~~~KnpKv~~~ 737 (2015)
.++........... ..++|.|+.-+. +.++|..|..+|..++....++. +++.|+..+ ..++++++..
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d~~i~~~ 420 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQV 420 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCCHHHHHH
Confidence 77642111011111 235677777654 45788888889988887555443 245555554 7889999999
Q ss_pred HHHHHHHHHHHhCCCC-C-Chh------hHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000156 738 GILWMVSAVEDFGVSH-L-KLK------DLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2015)
Q Consensus 738 ~l~~L~~li~~fG~~~-l-~~k------~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (2015)
++..|.+++....... . ... ..++.+..+ ..|.|..|++.|..++-..|
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 9999998886321110 0 011 134556666 78899999999999875444
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.46 E-value=2.7e-05 Score=101.46 Aligned_cols=377 Identities=12% Similarity=0.117 Sum_probs=235.0
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000156 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (2015)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~---y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (2015)
+++.+.+.+.+-..+.+|+..++++++..+-.+-+ -..+++.|.+.+. +.+..+...|+.+|..|+.+-...-...
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 36788889999999999999999987532222210 1236677888887 6778899999999999997543221112
Q ss_pred -hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHhhcCC-----hHHHHHHHHHHHHHH
Q 000156 364 -SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKV-----PLVRSLTLNWVTFCI 431 (2015)
Q Consensus 364 -~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~------~il~~l~~~L~~Kn-----p~vR~~~l~~L~~~l 431 (2015)
-...+|.|+..+.+....|++.+..||..+... +.... ..++.++..+...+ ..+...++..|..+.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 225789999999999999999999999998754 11111 23556666665433 233444444444433
Q ss_pred HhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCC
Q 000156 432 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511 (2015)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~ 511 (2015)
.......-......++|.|.+++.+.+++|+..|+.+|..+... ... ....+ +..
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~~~-----------~~~~v---~~~--------- 292 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNE-----------RIEMV---VKK--------- 292 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHH-----------HHHHH---HTT---------
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--hhh-----------hHHHH---Hhc---------
Confidence 32221111123467899999999999999999888777655421 110 00111 000
Q ss_pred CCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCH
Q 000156 512 SSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL 591 (2015)
Q Consensus 512 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ 591 (2015)
T Consensus 293 -------------------------------------------------------------------------------- 292 (529)
T 3tpo_A 293 -------------------------------------------------------------------------------- 292 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccc------hHHHHHHHHHhcCCCCcccHHHHHHHHHH
Q 000156 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIE 665 (2015)
Q Consensus 592 ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le 665 (2015)
-+.+.++..|.+.++..+..++..|..++.+.+... .....|+.+| .+.+..|...++-
T Consensus 293 ---------g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL------~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 293 ---------GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL------TNPKTNIQKEATW 357 (529)
T ss_dssp ---------TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT------TCSSHHHHHHHHH
T ss_pred ---------cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH------cCCCHHHHHHHHH
Confidence 001345566778888888888888887764321110 0112233333 4556678888888
Q ss_pred HHHHHHHHcCCCchhHH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhChhH--------HHHHHHHHhhhCCChhH
Q 000156 666 VINYLAATATKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKV 734 (2015)
Q Consensus 666 ~l~~l~~~~~~~~~~~~-~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~~--------Vl~~L~~~l~~~KnpKv 734 (2015)
+|..++........... ..++|.|+.-+.+ .+++..|.-+|..++....++. +++.|+..+ ..+++++
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL-~~~d~~i 436 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKI 436 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCSCHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh-cCCCHHH
Confidence 88877642111111111 2357777766554 5788888888888877555443 244555554 6889999
Q ss_pred HHHHHHHHHHHHHHhCCCC-C-Chhh------HHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000156 735 LSEGILWMVSAVEDFGVSH-L-KLKD------LIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2015)
Q Consensus 735 ~~~~l~~L~~li~~fG~~~-l-~~k~------li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (2015)
+..++..|.+++....... . .+.. .++.+..+ ..|.|..|++.|..++-..|
T Consensus 437 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 437 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 9999999988875321110 0 1111 24455666 78899999999988875443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.6e-06 Score=95.51 Aligned_cols=182 Identities=20% Similarity=0.176 Sum_probs=138.0
Q ss_pred chHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000156 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (2015)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~ 934 (2015)
.+.++..+.|.+|.+|..|++.|..+-. .+.+..|...|.|.+..|+..|+.+++.+..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------- 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 4578888999999999999999886521 4677888889999999999999999887641
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhH
Q 000156 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014 (2015)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll 1014 (2015)
...++.++..|.|..+.||.++..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....+
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~~ 145 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DERAV 145 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-C-------CGGGH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHhCC--CHHHHHHHHHHHHHc-C-------CHHHH
Confidence 34678889999999999999999999766 4456788899999876 689999999888764 2 13456
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhcc
Q 000156 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (2015)
Q Consensus 1015 ~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~ 1071 (2015)
..+...+.|.++.||.+|..+|..+...-..+.+...+.+=++..+......+.+.+
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 778889999999999999999987732111223444444445555665566665543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.4e-06 Score=94.00 Aligned_cols=181 Identities=20% Similarity=0.169 Sum_probs=135.7
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
..+.+++.+.|.+|.+|..|++.|..+-. .+.+..|...|.|.+..|+..|+..++.+. .
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----~----- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D----- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-----
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C-----
Confidence 44678999999999999999999886421 356788888889999999999999988763 1
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhh
Q 000156 934 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013 (2015)
Q Consensus 934 ~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~l 1013 (2015)
...++.++..|.|..+.||..|..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~ 139 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DERA 139 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-T-------CGGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh-C-------CHHH
Confidence 24678889999999999999999999775 4456788899999876 689999999888764 2 1356
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhh
Q 000156 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL 1069 (2015)
Q Consensus 1014 l~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k 1069 (2015)
+..+..++.|.++.||..|..+|..+-..-....+...+.+=++..+......+.+
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 67788999999999999999999877211111223333333344445544555544
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.41 E-value=0.036 Score=78.05 Aligned_cols=534 Identities=10% Similarity=0.079 Sum_probs=267.4
Q ss_pred hHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-
Q 000156 323 FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN- 400 (2015)
Q Consensus 323 y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~- 400 (2015)
+..++..+...+. ..+..++..+++|+..+..-....+ -.-..+++.+++.+-. .+.++.++.+|+..++......
T Consensus 192 ~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l~-~~~~~~~a~~~L~~i~~~~~~~~ 269 (1049)
T 3m1i_C 192 FEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY-IYETNILELLSTKFMT-SPDTRAITLKCLTEVSNLKIPQD 269 (1049)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHHH-SHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhCC-CHhHHHHHHHHHHHHHhCCCCcc
Confidence 4556666667666 4467788888888877654222111 0112356666644432 6789999999999998752111
Q ss_pred -------hHhHHHHHHHHhhc------------------CChHHHHHHHHHHHHHHHhcCh-----hHHHHhhhhHHHHH
Q 000156 401 -------LVDVVEDVKTSVKN------------------KVPLVRSLTLNWVTFCIETSSK-----AAVLKVHKDYVPIC 450 (2015)
Q Consensus 401 -------l~~il~~l~~~L~~------------------Knp~vR~~~l~~L~~~l~~~~~-----~~l~~~l~~l~p~l 450 (2015)
+..+++.++..++. .........+.++..+++.+.. ..+...+..+++.+
T Consensus 270 ~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 349 (1049)
T 3m1i_C 270 NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence 11222333332221 1223333455555444432211 11234567788889
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHh----C-chHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCC
Q 000156 451 MECLNDGTPEVRDAAFSVLAAIAKSV----G-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 525 (2015)
Q Consensus 451 ~k~L~Ds~~~VR~aA~~al~~l~~~~----G-e~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~ 525 (2015)
..+....+.+|+..+.+....+...+ . ...+.+++..|-+ -++.+..-
T Consensus 350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~-------~ll~~m~~-------------------- 402 (1049)
T 3m1i_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRL-------VIIENMVR-------------------- 402 (1049)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHH-------HHHHTCCC--------------------
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH-------HHHHhcCC--------------------
Confidence 99888889999999988777776632 1 1223344443322 22222100
Q ss_pred CCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHH---------HHH
Q 000156 526 VEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE---------IES 596 (2015)
Q Consensus 526 ~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee---------~e~ 596 (2015)
|+... -. . .++.+.+.+..-..|+ +-.
T Consensus 403 ~ed~~--~~--------~----------------------------------dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 403 PEEVL--VV--------E----------------------------------NDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp CTTCC--EE--------E----------------------------------CTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred Cccee--ee--------e----------------------------------CCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 00000 00 0 0000001111111111 111
Q ss_pred HhhccCcHH--------HHhhhc--cCCHHHHHHHHHHHHHHHHhcccc-c-hHHHHHHHHHhcCCCC---cccHHHHHH
Q 000156 597 RLGSLIPAD--------TVGQLK--SAVWKERLEAISSLRQQVEAVQNL-D-QSVEILVRLVCMLPGW---SEKNVQVQQ 661 (2015)
Q Consensus 597 ~~~~ll~~~--------l~~~L~--s~~Wk~Rl~a~e~L~~~v~~~~~~-~-~~~~~Lv~~L~~~pg~---~DsN~qV~~ 661 (2015)
.+..+.+.+ +...+. +.+|+.|.+++-.++.+.+..... . .....++..|...|.+ +|.++.|..
T Consensus 439 ~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~ 518 (1049)
T 3m1i_C 439 YLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVAS 518 (1049)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHH
Confidence 112222322 222333 478999999999999765432211 1 1133344444322333 245666665
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhChhHH----------HHHHHHHh---
Q 000156 662 QVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFI----------FERLYKIM--- 726 (2015)
Q Consensus 662 ~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~~V----------l~~L~~~l--- 726 (2015)
..+.++..+.+-... ....+..+++.+++.+.| .+++..|..+|..+++.++...+ ++.++..+
T Consensus 519 ~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~ 597 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKT 597 (1049)
T ss_dssp HHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 677777765543211 234677788888888887 57999999999999998765433 55555533
Q ss_pred hhCCChhHHHHHHHHHHHHHHHhCC-CCC-C-hhh----HHHHHHhcCCC----C---C-chh-HHH--HHHHHHHHHHH
Q 000156 727 KDHKNPKVLSEGILWMVSAVEDFGV-SHL-K-LKD----LIDFCKDTGLQ----S---S-AAA-TRN--ATIKLLGALHK 788 (2015)
Q Consensus 727 ~~~KnpKv~~~~l~~L~~li~~fG~-~~l-~-~k~----li~~l~~~gL~----~---s-n~~-VR~--aA~~ll~~Ly~ 788 (2015)
...-.++......+.+..++...|. ... . +.. ++..+... +. + . ++. ++. ....++..+..
T Consensus 598 ~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~ 676 (1049)
T 3m1i_C 598 TADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI-VEQSTANPTLLLDSETVKIIANIIKTNVAVCT 676 (1049)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHH-HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhchhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 2233455566667777777766552 100 0 111 22212111 11 0 0 222 232 22445667778
Q ss_pred HhChhHHhhhhhccHHHHHHHHHH---HhcC-CCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCC
Q 000156 789 FVGPDIKGFLADVKPALLSALDAE---YEKN-PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES 864 (2015)
Q Consensus 789 ~~G~~l~~~L~~lkp~ll~~Le~e---f~k~-~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d 864 (2015)
.+|..+.+++..+-+..+..+..- ++.. ...+++. . ..|.+.....+.+.+
T Consensus 677 ~l~~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~-~------------------~~p~~~~~~~~~~~l------ 731 (1049)
T 3m1i_C 677 SMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIA-T------------------KTPKVRGLRTIKKEI------ 731 (1049)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG-G------------------GSHHHHHHHHHHHHH------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchh-h------------------hhHHHHHHHHHHHHH------
Confidence 888888777655444333222211 0000 0000000 0 000000000011111
Q ss_pred CChHHHHHHHHHHHHHHHhcccc----CCCCChhhHHHHHHhcccc--chHHHHHHHHHHHHHHHHHhChhhHHhhhHHH
Q 000156 865 PDWKVRLESIEAVNKILEEANKR----IQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2015)
Q Consensus 865 ~~Wk~R~eale~L~~ll~~a~~~----I~~~~~~eL~~~L~~rL~D--sN~~V~~~Al~~l~~La~alg~~f~~~~~~ll 938 (2015)
+..+...+... .. ..+. ...++..+...+.. +.... ..++.+++.++..+|..+.+|+..++
T Consensus 732 ---------~~ll~~~~~~~-~~l~~~~~~~-~~~~l~~ll~~~~~~~~~~~~-~~~l~l~~~ii~~~~~~~~~~l~~i~ 799 (1049)
T 3m1i_C 732 ---------LKLVETYISKA-RNLDDVVKVL-VEPLLNAVLEDYMNNVPDARD-AEVLNCMTTVVEKVGHMIPQGVILIL 799 (1049)
T ss_dssp ---------HHHHHHHHHHC-SCHHHHHHHT-HHHHHHHHHHHHHHSCGGGCC-THHHHHHHHHHHHHGGGCHHHHHHHH
T ss_pred ---------HHHHHHHHHhC-CCHHHHHHHH-HHHHHHHHHHHHHhCCccccc-HHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 11222222110 00 0010 12233333222211 11111 45889999999999999999999888
Q ss_pred HHHHHHh-----C--CCcHHHHHHHHHHHHHHHHhcC
Q 000156 939 SDILKCL-----G--DNKKHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 939 p~ll~~L-----~--D~k~~Vr~aa~~aL~~i~~~~g 968 (2015)
..++.+. + +..+.+|......+..++.++.
T Consensus 800 ~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~ 836 (1049)
T 3m1i_C 800 QSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSF 836 (1049)
T ss_dssp HHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCH
Confidence 8887774 3 4678899999999999998875
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.4e-06 Score=95.63 Aligned_cols=179 Identities=18% Similarity=0.171 Sum_probs=134.9
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000156 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2015)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2015)
+.+...+.+.+|..|..|+..|..+.. .+.++.|...+.|.+..|+..|+.+|+.+.. ...
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~ 82 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 82 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 357777899999999999999988642 2467778888899999999999999988742 356
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000156 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (2015)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (2015)
++.|++.+++..+.||.++..+|..+.. ...++.|...+++.++.+|..++..|..+- . +..+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-------~~~~ 145 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----D-------ERAV 145 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C-------HHHH
Confidence 7889999999999999998888876521 457788889999999999999999987741 1 3467
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhc
Q 000156 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (2015)
Q Consensus 448 p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~ 502 (2015)
+.|..+++|.++.||.+|..+|+.+..--.-..+..++..=++..+....+.+..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8899999999999999999999876321111123333333345445554555544
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-05 Score=93.73 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=65.3
Q ss_pred HHHHHhhhcc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 000156 686 LLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (2015)
Q Consensus 686 l~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l 763 (2015)
++.|+..+.| ..+|..|..+|..+. ...+++.+...+ .+.++.+|..++..|.. +|...-.+..+++.+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~----l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEFC-SDKNYIRRDIGAFILGQ----IKICKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHHH-TCSSHHHHHHHHHHHHH----SCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----CchHHHHHHHHH-cCCCHHHHHHHHHHHHH----hccccccchHHHHHH
Confidence 5566666665 457777777777654 334677777765 68899999998877654 443222345566766
Q ss_pred H-hcCCCCCchhHHHHHHHHHHHHHH
Q 000156 764 K-DTGLQSSAAATRNATIKLLGALHK 788 (2015)
Q Consensus 764 ~-~~gL~~sn~~VR~aA~~ll~~Ly~ 788 (2015)
. .+ +.+.++.||..|..+|+.+..
T Consensus 96 ~~~~-~~d~~~~vr~~a~~aL~~l~~ 120 (280)
T 1oyz_A 96 NNMA-LNDKSACVRATAIESTAQRCK 120 (280)
T ss_dssp HHHH-HHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-hcCCCHHHHHHHHHHHHHHhc
Confidence 5 34 788999999999999998864
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.40 E-value=9.3e-06 Score=96.37 Aligned_cols=223 Identities=14% Similarity=0.144 Sum_probs=159.1
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhh
Q 000156 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2015)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2015)
++.++..+ .+.++.+|..++..|..+ |. ...++.+..+ +.+.++.||..|..+|+.+. ..-
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~----~~-----~~~~~~L~~~-l~d~~~~vR~~A~~aL~~l~----~~~---- 85 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLR----GG-----QDAVRLAIEF-CSDKNYIRRDIGAFILGQIK----ICK---- 85 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHH----CC-----HHHHHHHHHH-HTCSSHHHHHHHHHHHHHSC----CCT----
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHcc----CC-----chHHHHHHHH-HcCCCHHHHHHHHHHHHHhc----ccc----
Confidence 45566664 678999999988887654 32 3466777777 89999999999998876442 100
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHH-HhcCCCChHHHHHHHHHH
Q 000156 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV-KSLESPDWKVRLESIEAV 877 (2015)
Q Consensus 799 ~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll-~~l~d~~Wk~R~eale~L 877 (2015)
. . ...+.+-+. ..+.|.+|.+|..++..|
T Consensus 86 -~-------------------------------------------~------~~~l~~~L~~~~~~d~~~~vr~~a~~aL 115 (280)
T 1oyz_A 86 -K-------------------------------------------C------EDNVFNILNNMALNDKSACVRATAIEST 115 (280)
T ss_dssp -T-------------------------------------------T------HHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred -c-------------------------------------------c------chHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 0 000111122 135678999999999999
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHH
Q 000156 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957 (2015)
Q Consensus 878 ~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~ 957 (2015)
..+.... +....+++..|...+.|.+..|+..|+..++.+.. ...+|.++..+.|....||..|.
T Consensus 116 ~~l~~~~-----~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~ 180 (280)
T 1oyz_A 116 AQRCKKN-----PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAA 180 (280)
T ss_dssp HHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHhccC-----CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHH
Confidence 9876421 11125678888899999999999999999887643 23688899999999999999999
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000156 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2015)
Q Consensus 958 ~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~ 1037 (2015)
.+|..+. ..-..+++.+...|.++ ++.+|..++..|... . ....++.+..+|.|.+ ||..|..+|.
T Consensus 181 ~aL~~~~--~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~-~-------~~~~~~~L~~~l~d~~--vr~~a~~aL~ 246 (280)
T 1oyz_A 181 FAININK--YDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYR-K-------DKRVLSVLCDELKKNT--VYDDIIEAAG 246 (280)
T ss_dssp HHHHHHT--CCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHT-T-------CGGGHHHHHHHHTSSS--CCHHHHHHHH
T ss_pred HHHHhhc--cCcHHHHHHHHHHhcCC--CHHHHHHHHHHHHHh-C-------CHhhHHHHHHHhcCcc--HHHHHHHHHH
Confidence 9997762 22456788888888876 589999999888753 1 1446667888888854 9999988887
Q ss_pred HH
Q 000156 1038 EI 1039 (2015)
Q Consensus 1038 ~l 1039 (2015)
.+
T Consensus 247 ~i 248 (280)
T 1oyz_A 247 EL 248 (280)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.2e-06 Score=94.14 Aligned_cols=149 Identities=20% Similarity=0.202 Sum_probs=123.8
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000156 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2015)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2015)
+.+.+.+.+.+|..|..|+..|..+.. ...+..|...+.|.+..|+..|+.+|+.+.. ...
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~ 77 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 77 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 468888999999999999999987642 2356777788899999999999999987642 256
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000156 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (2015)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (2015)
++.|++.+.+..+.||..+..+|..+.. ...++.+...+++.++.+|..++..|..+- -+..+
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~ 140 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAV 140 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----------CGGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CHHHH
Confidence 7889999999999999988888876521 457888889999999999999999887641 14567
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Q 000156 448 PICMECLNDGTPEVRDAAFSVLAAI 472 (2015)
Q Consensus 448 p~l~k~L~Ds~~~VR~aA~~al~~l 472 (2015)
+.+..++.|.++.||.+|..+|+.+
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999876
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0087 Score=83.11 Aligned_cols=581 Identities=11% Similarity=0.068 Sum_probs=307.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC----ChHHHHHHHHHHhc-----ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHH
Q 000156 300 SERKDAVAELTKLASTKRIAPG----DFTEVCRTLKKLIT-----DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (2015)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~----~y~~l~~~L~k~l~-----D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (2015)
..|--|+..|...++ .+... +...|-..|...+. +....|+...+.++..++...-+ ..+..+++.
T Consensus 58 ~vr~fa~~~L~~~I~--~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~ 132 (980)
T 3ibv_A 58 STRLICLQTLSEKVR--EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFAS 132 (980)
T ss_dssp HHHHHHHHHHHHHHH--HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHH
T ss_pred HHHHHHHHHHHHHHH--hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHH
Confidence 445667777766554 34445 44444444444433 23566778888888888876432 344555666
Q ss_pred HHHHhccCcH-HHHHHHHHHHHHHHHh-cC----------------------CChHhHHHHHHHHh----hcCChHHHHH
Q 000156 371 LLEKLKEKKP-TVAESLTQTLQAMHKA-GC----------------------LNLVDVVEDVKTSV----KNKVPLVRSL 422 (2015)
Q Consensus 371 LL~klkdkk~-~V~~aa~~aL~al~~~-~~----------------------~~l~~il~~l~~~L----~~Knp~vR~~ 422 (2015)
++..++.... .........|..+..- .. ..+..+++.+...| .+.++.++..
T Consensus 133 l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~ 212 (980)
T 3ibv_A 133 LQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGL 212 (980)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 6655543222 1111111122211111 00 01222333333333 3378889999
Q ss_pred HHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch-HHHHHHHhccHHHHHHHHHHHh
Q 000156 423 TLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR-PLERSIEKLDDVRRNKLSEMIA 501 (2015)
Q Consensus 423 ~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~-~~~~~l~~Ld~~~~kkI~e~~~ 501 (2015)
++..|..++.-.+...+.. ..+++.+.+++.+ +++|++|.+||..+...-... .-..++..| .+.+.+.
T Consensus 213 ~L~~l~s~i~wi~~~~i~~--~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l------~L~~~~~ 282 (980)
T 3ibv_A 213 CLQVYAQWVSWININLIVN--EPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNIL------NLNLFFS 282 (980)
T ss_dssp HHHHHHHHTTTSCHHHHHC--HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH------HHHHHHC
T ss_pred HHHHHHHHHhhcCHHhhhc--chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHH------hHHHHHH
Confidence 9999998887445443322 6788999999987 899999999999998774431 112222222 1222221
Q ss_pred cCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCC
Q 000156 502 GSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAP 581 (2015)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~ 581 (2015)
... . .+
T Consensus 283 ~l~--------------------------------------~----------------------------------~~-- 288 (980)
T 3ibv_A 283 KSQ--------------------------------------E----------------------------------QS-- 288 (980)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HHh--------------------------------------c----------------------------------cc--
Confidence 100 0 00
Q ss_pred CCCCCCCCCHHHHHHHhhccC---cHHHHhhhccCC-H---HHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcc
Q 000156 582 EDVEPSEMSLEEIESRLGSLI---PADTVGQLKSAV-W---KERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 654 (2015)
Q Consensus 582 ~~~~~~~~s~ee~e~~~~~ll---~~~l~~~L~s~~-W---k~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~D 654 (2015)
+ . .|.-..+..++ +.+++.. .+.. | ..+..+...+. ...+.+++++..
T Consensus 289 ~-------D-~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~----------~ll~~lL~~~~~------ 343 (980)
T 3ibv_A 289 T-------D-PNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLY----------NLFPYLIRYLSD------ 343 (980)
T ss_dssp C-------C-HHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHH----------HTHHHHHHHHTC------
T ss_pred c-------c-HHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHH----------HHHHHHHHHhCC------
Confidence 0 0 11111111111 2222222 1111 1 11112222221 123344444432
Q ss_pred cHHHHHHHHHHHHHHHHHHc---CC---Cc---hhHHHHHHHHHHhhhcc-------h-----------hhhHHHHHHHH
Q 000156 655 KNVQVQQQVIEVINYLAATA---TK---FP---KKCVVLCLLGISERVAD-------I-----------KTRAHAMKCLT 707 (2015)
Q Consensus 655 sN~qV~~~~Le~l~~l~~~~---~~---~~---~~~~~~il~~LveKlgD-------~-----------K~r~~a~~~L~ 707 (2015)
...-|...++++|..++... +. .. ...+..+++.++.|+.= . -.|.... .|.
T Consensus 344 ~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~ 422 (980)
T 3ibv_A 344 DYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQ 422 (980)
T ss_dssp SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHH
Confidence 11245556666666666432 11 11 23445556666665521 0 1355555 777
Q ss_pred HHHhhhChhHHHH----HHHHHhh------hCCChhHHHHHHHHHHHHHHHhCCCC-------CChhhHHHHHHhcCCC-
Q 000156 708 TFSEAVGPGFIFE----RLYKIMK------DHKNPKVLSEGILWMVSAVEDFGVSH-------LKLKDLIDFCKDTGLQ- 769 (2015)
Q Consensus 708 ~l~e~~~~~~Vl~----~L~~~l~------~~KnpKv~~~~l~~L~~li~~fG~~~-------l~~k~li~~l~~~gL~- 769 (2015)
..+...+++.+++ .+...+. .+.+|+.+..++..|..+-+...... -.+..+++++..+ +.
T Consensus 423 d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~l-l~s 501 (980)
T 3ibv_A 423 DTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALV-TTS 501 (980)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHH-HHS
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHH-HhC
Confidence 7788888888877 4433321 23569999999988877665332111 1123466666554 44
Q ss_pred ----CCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000156 770 ----SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2015)
Q Consensus 770 ----~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2015)
+.+|.||..+..+++..+.|+... .+.-|.
T Consensus 502 ~i~~~~hp~V~~~~~~~l~rys~~~~~~-----~~~l~~----------------------------------------- 535 (980)
T 3ibv_A 502 QVCRHPHPLVQLLYMEILVRYASFFDYE-----SAAIPA----------------------------------------- 535 (980)
T ss_dssp STTTCCCHHHHHHHHHHHHHTGGGGGTC-----CTTHHH-----------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhcC-----chhHHH-----------------------------------------
Confidence 788999999999999988877521 000011
Q ss_pred CCcccccccchHHHH--hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc----ch-----------
Q 000156 846 PREDISGKFTPTLVK--SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD----SN----------- 908 (2015)
Q Consensus 846 prvdIs~~L~~~ll~--~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~D----sN----------- 908 (2015)
+...++. ++.+.+-++|..|...+..+++.+.+.+.|. ...++..|...|.- .+
T Consensus 536 --------~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~-~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 536 --------LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNY-TESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp --------HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSS-HHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred --------HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhH-HHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 1123444 5556667788889999999999887778765 47888888776641 00
Q ss_pred ------HHHHHHHHHHHHHHHHHhCh---hhHHhhhHHHHHHHHHhC----CCc----HH-HHHHHHHHHHHHHHhcC--
Q 000156 909 ------KNLVMATLITLGAVASAMGP---AVEKSSKGVLSDILKCLG----DNK----KH-MRECTLTVLDAWLAAVH-- 968 (2015)
Q Consensus 909 ------~~V~~~Al~~l~~La~alg~---~f~~~~~~llp~ll~~L~----D~k----~~-Vr~aa~~aL~~i~~~~g-- 968 (2015)
..=...-.+++|.|+..++. .-..|+..++++++..+. ..+ .. -....+.+++.+++-..
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAR 686 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSC
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcc
Confidence 11233456788888888763 334678888888776553 211 11 11234555566665431
Q ss_pred ----------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc-CC-CChHHHHHHHHHH
Q 000156 969 ----------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM-TD-KSSDVRKAAEACI 1036 (2015)
Q Consensus 969 ----------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L-~D-~~~~VR~aA~~~L 1036 (2015)
+..+++.+...|..-..+..+|..+...+.+.+...+. ++.+++++++..| .+ ...+. ...-..+
T Consensus 687 ~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~--~~~p~lp~~i~~ll~~~~~~e~-~~fL~l~ 763 (980)
T 3ibv_A 687 GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGP--DMLPKVPQLISILLNSIDMNEL-VDVLSFI 763 (980)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHH--HHTTTHHHHHHHHHHHCCTTTH-HHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH--hHHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Confidence 11233344444542111477888888888888776543 2344444443332 22 12222 2333566
Q ss_pred HHHHHHcChhHHHHHhccC
Q 000156 1037 VEILRAGGQETIEKNLKDI 1055 (2015)
Q Consensus 1037 ~~l~~~~G~~~~~~~l~~L 1055 (2015)
+.++..+|.+ +.+.+..|
T Consensus 764 ~qli~~f~~~-~~~~l~~l 781 (980)
T 3ibv_A 764 SQLIHIYKDN-MMEITNRM 781 (980)
T ss_dssp HHHHHHTTTT-SHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHH
Confidence 7777778877 45454433
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-05 Score=89.27 Aligned_cols=185 Identities=13% Similarity=0.121 Sum_probs=136.6
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-h
Q 000156 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-S 364 (2015)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~ 364 (2015)
+-+...+.+.++..|.+|+..|..+.....-....+ ..+++.|...+.+.+..++..|+.+|+.|+.+-...-... -
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 356677899999999999999999884321000000 1367788888998899999999999999985322211111 2
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-----hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000156 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2015)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~-----l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2015)
...+|.|+..+.+....++..+..+|..+....... -..+++.++..+++.++.+|..++..|..+....+.. .
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~ 173 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-K 173 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-H
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH-H
Confidence 357899999999999999999999999887430000 1236788889999999999999999999877643322 1
Q ss_pred HHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 440 LKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 440 ~~~-l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
... -...++.+..++.+.+++||..|..+|..+.
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 111 2357899999999999999999999998764
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00014 Score=96.26 Aligned_cols=394 Identities=14% Similarity=0.103 Sum_probs=223.8
Q ss_pred HHHHhhhcc---CCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh
Q 000156 604 ADTVGQLKS---AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (2015)
Q Consensus 604 ~~l~~~L~s---~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~ 680 (2015)
.++.+.|.+ .+-..|..++..+.-+.-.+.+.....-.+++. +..+|+.....+.-.+..++ +-...
T Consensus 38 ~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl------~~s~~~~~Krl~YL~l~~~~----~~~~e 107 (621)
T 2vgl_A 38 ANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNL------LSSNRYTEKQIGYLFISVLV----NSNSE 107 (621)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHG------GGCSCHHHHHHHHHHHHHSC----CCCHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHH------hcCCCHHHHHHHHHHHHHHc----cCCcH
Confidence 355666763 367888899988876554333322112223332 34566666665554444333 22334
Q ss_pred HHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhhChhHHHHHHHHHhh-hCCChhHHHHHHHHHHHHHHHhCCCCCChh
Q 000156 681 CVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGVSHLKLK 757 (2015)
Q Consensus 681 ~~~~il~~LveKlgD~--K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~-~~KnpKv~~~~l~~L~~li~~fG~~~l~~k 757 (2015)
.+-.++..+..-+.|+ -+|..|..+|..+....-.+.+...+.+.+. .+.+|-||..++..+..+..... +.+...
T Consensus 108 ~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~ 186 (621)
T 2vgl_A 108 LIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMG 186 (621)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCch
Confidence 4555566666656663 4677777777666442222234444444432 68999999999999999998543 333223
Q ss_pred hHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCC-------CCCCCC------
Q 000156 758 DLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF-------EGTVVP------ 824 (2015)
Q Consensus 758 ~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~-------~~~p~p------ 824 (2015)
.+++.+..+ |.+.|+.|+.+|..++.++...-+..+. .+.|.+...|..-+..-.. .+-+.|
T Consensus 187 ~~~~~l~~l-L~d~d~~V~~~a~~~l~~i~~~~~~~~~----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i 261 (621)
T 2vgl_A 187 DWTSRVVHL-LNDQHLGVVTAATSLITTLAQKNPEEFK----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL 261 (621)
T ss_dssp SCHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHCHHHHT----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred hHHHHHHHH-hCCCCccHHHHHHHHHHHHHHhChHHHH----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence 688888888 9999999999999999999765543322 2233333333332221000 000000
Q ss_pred cccccCccccCCCCCCCCCCCCC-c--ccccccc---hHHHHhcCCC----C-------hHHHHHHHHHHHHHHHhcccc
Q 000156 825 KKTVRASESTSSVSSGGSDGLPR-E--DISGKFT---PTLVKSLESP----D-------WKVRLESIEAVNKILEEANKR 887 (2015)
Q Consensus 825 ~R~~r~~~~~~s~~~~~~d~lpr-v--dIs~~L~---~~ll~~l~d~----~-------Wk~R~eale~L~~ll~~a~~~ 887 (2015)
.+.++ .+.+ . +....+. ..++..+.+. . .-+-.|++..+-.+ .
T Consensus 262 l~ll~--------------~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l---~--- 321 (621)
T 2vgl_A 262 LRLLQ--------------CYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHH---D--- 321 (621)
T ss_dssp HHHGG--------------GSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHH---C---
T ss_pred HHHHH--------------HhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhc---C---
Confidence 00000 0000 0 1111111 1222221111 0 12222332222211 0
Q ss_pred CCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHh
Q 000156 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAA 966 (2015)
Q Consensus 888 I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~ 966 (2015)
-.+......+..|...|.+++.+++..|+..+..++..-+. ..++......++.+|. |....||..+.+.|..++..
T Consensus 322 ~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 322 SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 01111244566777777778889999999999998855431 1344556778888998 99999999999998888876
Q ss_pred cCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000156 967 VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 967 ~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
-.++.++..+...+.+. +.+.|.+++.++..+...++. .....+..++..+.+....|...+...+..+
T Consensus 400 ~Nv~~Iv~eL~~yl~~~--d~~~~~~~v~~I~~la~k~~~--~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~i 468 (621)
T 2vgl_A 400 SNAQQIVAEMLSYLETA--DYSIREEIVLKVAILAEKYAV--DYTWYVDTILNLIRIAGDYVSEEVWYRVIQI 468 (621)
T ss_dssp HHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHGGGSCSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 67788888888888764 478899988888876655432 2233344455555554444544444444433
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00031 Score=74.72 Aligned_cols=198 Identities=20% Similarity=0.304 Sum_probs=146.6
Q ss_pred hhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHH
Q 000156 292 EGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (2015)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (2015)
.-+.+.-|..++.|+.-+-.++.. .+.-|..++..|.-.+. +.-+..-.+-.+++|.+|+.= + ..++.++|.
T Consensus 39 ~~LDDDlwtV~kNAl~vi~~i~~~---~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-P---e~v~~vVp~ 111 (253)
T 2db0_A 39 ELLDDDLWTVVKNAISIIMVIAKT---REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-P---ELVKSMIPV 111 (253)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-H---HHHHHHHHH
T ss_pred HHhccHHHHHHHhHHHHHHHHHHH---hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-H---HHHHhhHHH
Confidence 346889999999999999888752 12345666666666665 777777777778888888642 2 357889999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000156 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (2015)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (2015)
++..+.-..+.++-...-+|..++..++..+..++.+|..-+.+||-.=|..+++|+..+=. +. .++...++|-+
T Consensus 112 lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe----n~-~~yv~PfLprL 186 (253)
T 2db0_A 112 LFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE----NS-FKYVNPFLPRI 186 (253)
T ss_dssp HHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT----TT-HHHHGGGHHHH
T ss_pred HHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc----cC-ccccCcchHHH
Confidence 99999777888888888999999987444567888999999999999999999999876422 22 25567788999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhCc--hHHHHHHHhcc---HHHHHHHHHHHh
Q 000156 451 MECLNDGTPEVRDAAFSVLAAIAKSVGM--RPLERSIEKLD---DVRRNKLSEMIA 501 (2015)
Q Consensus 451 ~k~L~Ds~~~VR~aA~~al~~l~~~~Ge--~~~~~~l~~Ld---~~~~kkI~e~~~ 501 (2015)
..+|.|.|.-||..|.++|+.+...-.. +.+..-+..++ +.-++++++.+.
T Consensus 187 ~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 187 INLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred HHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999999988754321 12333333443 345666666554
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.9e-05 Score=89.17 Aligned_cols=183 Identities=14% Similarity=0.154 Sum_probs=136.8
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-h
Q 000156 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-S 364 (2015)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~ 364 (2015)
+.|++.+.+.+...|..|+..|..++....-....+ ..+++.|.+.+.+.+..+...|+.+|+.|+.+-...-... -
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 468889999999999999999987653210000000 1366788888998889999999999999986422211112 2
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000156 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2015)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l-------~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2015)
...+|.|+..+.+....++..+..+|..+... ... ..+++.|...+++.++.+|..++..|..+.... ..
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~ 171 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE 171 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence 24899999999999999999999999988653 111 136788899999999999999999998865433 22
Q ss_pred HHHHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 438 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 438 ~l~~~-l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
..... -..++|.++.++.+.+++||..|..+|+.+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 21111 2567899999999999999999999998886
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.016 Score=80.61 Aligned_cols=620 Identities=10% Similarity=0.053 Sum_probs=312.3
Q ss_pred hhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-hhh---hHHH
Q 000156 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-AVD---VFLD 131 (2015)
Q Consensus 56 ~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~-~~~---~v~~ 131 (2015)
++..+...+|+.+..++|+|+..|+.-...+.-- ...+++.+. ++++ .+.+|+.|.+|+..++... .++ .+++
T Consensus 197 iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~-~~~ll~~l~-~~L~-~~~~r~~A~ecL~ei~~k~~~~~~k~~li~ 273 (980)
T 3ibv_A 197 MMLAYSNAKNYGTVGLCLQVYAQWVSWININLIV-NEPCMNLLY-SFLQ-IEELRCAACETMTEIVNKKMKPLEKLNLLN 273 (980)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHH-CHHHHHHHH-HHTT-SHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhh-cchHHHHHH-HHcC-ChHHHHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 3444444578899999999999999866442111 134666655 5564 5899999999999888652 222 2222
Q ss_pred HH--HHHh---h--cCChhhHH-------HHHHHHHHHHHHhCCCC----------cChhHHHhhhhhhhcCCChhHHHH
Q 000156 132 VM--EKAI---K--NKVAKAVV-------PAIDVMFQALSEFGAKI----------IPPKRILKMLPELFDHQDQNVRAS 187 (2015)
Q Consensus 132 ~L--~~~~---~--~KnpKv~~-------~~l~~L~~~l~~fG~~~----------i~~k~il~~l~~ll~~~d~~VR~~ 187 (2015)
.| ...+ . +..+.... +.-..+..+ . -.+.. -.+..+++.+..+++|.+..|=..
T Consensus 274 ~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~-~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~ 351 (980)
T 3ibv_A 274 ILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-K-SDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTA 351 (980)
T ss_dssp HHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-H-TSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHT
T ss_pred HHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-c-cCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 22 1111 1 23333322 222222222 1 11110 113568899999999999888777
Q ss_pred HHHHHHHHHHHh---CC-chhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCC
Q 000156 188 SKGLTLELCRWI---GK-DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEEST 263 (2015)
Q Consensus 188 a~~l~~ely~~l---G~-~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~ 263 (2015)
+..+...+-..+ .. ..+. ...++...+-++..+.+.. .. .+ ...
T Consensus 352 t~~Fw~~~l~~~~~~~~~~~~~----~~~~~~l~~Ll~~li~k~~------------yp--------~d---~~~----- 399 (980)
T 3ibv_A 352 VFPFLSDLLVSLRKESSSKELS----ASLKEFLKSLLEAIIKKMK------------YD--------ES---QEW----- 399 (980)
T ss_dssp THHHHHHHHHHHHHHTTSCCCC----HHHHHHHHHHHHHHHHTTS------------CC--------TT---CCC-----
T ss_pred HHHHHHHHHHHHHhcccccccc----HHHHHHHHHHHHHHHHHcc------------CC--------Cc---ccc-----
Confidence 766644332221 10 0000 0112222223333333221 00 00 000
Q ss_pred CCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc---ccCHH
Q 000156 264 ADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT---DVNIA 340 (2015)
Q Consensus 264 ~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~---D~N~~ 340 (2015)
+.+.| . | | .++|.+ .+.+...+......+........-|.-+...+...+. ..+=.
T Consensus 400 ---~~~~d---~-e--d------~~~F~e------~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~ 458 (980)
T 3ibv_A 400 ---DDDPD---S-E--E------EAEFQE------MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQ 458 (980)
T ss_dssp ---CCCSS---S-S--T------HHHHHH------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred ---ccccc---h-h--H------HHHHHH------HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHH
Confidence 00000 0 0 0 134422 2222233333222222100000001123344444442 34456
Q ss_pred HHHHHHHHHHHHHHHhhhc------chhhhHhHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHh---cCCChHhHHH
Q 000156 341 VAVEAIQAIGNLARGLRTH------FSGSSRFLLPVLLEKLK-----EKKPTVAESLTQTLQAMHKA---GCLNLVDVVE 406 (2015)
Q Consensus 341 V~~~A~~~l~~La~~L~~~------f~~~~~~llp~LL~klk-----dkk~~V~~aa~~aL~al~~~---~~~~l~~il~ 406 (2015)
.+..|+-+++.++++++.. ..++...+++-|...+. +..+.|+..+..++...... ....+..+++
T Consensus 459 ~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~ 538 (980)
T 3ibv_A 459 LIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIE 538 (980)
T ss_dssp HHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 7888999999999998752 22455566666666554 78899999888888764433 2345677888
Q ss_pred HHHH--HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCC---------------------CHHHHH
Q 000156 407 DVKT--SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG---------------------TPEVRD 463 (2015)
Q Consensus 407 ~l~~--~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds---------------------~~~VR~ 463 (2015)
.++. ++.|.++.||..++..+.++.+.+.+. +.++++.++..+..+|.-. ..+-+-
T Consensus 539 ~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 617 (980)
T 3ibv_A 539 YFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQL 617 (980)
T ss_dssp HHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHH
T ss_pred HHhccccccCCChhHHHHHHHHHHHHHHHhhHH-hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHH
Confidence 8888 888999999999999999999887653 4456666666666665411 112345
Q ss_pred HHHHHHHHHHHHhCc--hHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccc
Q 000156 464 AAFSVLAAIAKSVGM--RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541 (2015)
Q Consensus 464 aA~~al~~l~~~~Ge--~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~ 541 (2015)
.-++++|.+....+. +....++..|-+--..+++.++....... ...++. + ..=..-+..++..
T Consensus 618 ~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~-----~~~~~i---~--~~i~al~~lakgf---- 683 (980)
T 3ibv_A 618 YLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSAL-----ENIISV---Y--CSLMAIGNFAKGF---- 683 (980)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-------CHHHHH---H--HHHHHHHHHHHTS----
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCc-----cHHHHH---H--HHHHHHHHHhccC----
Confidence 578888888888763 23445666654445556666654310000 000000 0 0000000000000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhc--cCCHHHHH
Q 000156 542 LSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK--SAVWKERL 619 (2015)
Q Consensus 542 ~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~--s~~Wk~Rl 619 (2015)
+.. + . .+ .+ -.+...+.+ +.+...|. .++...|.
T Consensus 684 ----~~~-------------~-----------~-----~~---~p---~~~~f~~~~-----~~il~~l~~~~~~~~ire 719 (980)
T 3ibv_A 684 ----PAR-------------G-----------S-----EE---VA---WLASFNKAS-----DEIFLILDRMGFNEDIRG 719 (980)
T ss_dssp ----CSC-------------C-----------------CC---CS---HHHHHHHHH-----HHHHHHHHHSCCSHHHHH
T ss_pred ----Ccc-------------c-----------C-----CC---Cc---HHHHHHHHH-----HHHHHHHHhcCCcHHHHH
Confidence 000 0 0 00 01 112222211 22323333 46788888
Q ss_pred HHHHHHHHHHHhccc-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcch--
Q 000156 620 EAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI-- 696 (2015)
Q Consensus 620 ~a~e~L~~~v~~~~~-~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~-- 696 (2015)
++..-+..++...+. ..+....++..|.. .+ ...-+...|.++..++..++.-....+..+++.++.++...
T Consensus 720 a~~~~~~r~i~~lg~~~~p~lp~~i~~ll~--~~---~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~ 794 (980)
T 3ibv_A 720 AVRFTSGRIINVVGPDMLPKVPQLISILLN--SI---DMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLS 794 (980)
T ss_dssp HHHHHHHHHTTTTHHHHTTTHHHHHHHHHH--HC---CTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccHhHHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888766322 22233333433321 11 11234567778888888776544455666777777765321
Q ss_pred ---------h----hhHHHHHHHHHHHhhh------------ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC
Q 000156 697 ---------K----TRAHAMKCLTTFSEAV------------GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (2015)
Q Consensus 697 ---------K----~r~~a~~~L~~l~e~~------------~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~ 751 (2015)
+ ++..-...|..+..+. ..+.++..++.++.+..++-++..|+..|.+++..+|.
T Consensus 795 ~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~ 874 (980)
T 3ibv_A 795 AAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGG 874 (980)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC---
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCC
Confidence 1 1222222334343321 12235666666655567888999999999999999974
Q ss_pred CC-CC------hhhHHHHHHhc----CCCCCch---hHHHHHHHHHHHHHHHhChhHHhhh
Q 000156 752 SH-LK------LKDLIDFCKDT----GLQSSAA---ATRNATIKLLGALHKFVGPDIKGFL 798 (2015)
Q Consensus 752 ~~-l~------~k~li~~l~~~----gL~~sn~---~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2015)
.. ++ ++ +++.+-.. ++.-.|+ .|=.....++..+|...|+.+..||
T Consensus 875 ~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l 934 (980)
T 3ibv_A 875 KDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYL 934 (980)
T ss_dssp ----CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 32 21 23 44443222 0211222 3555667778888888888777776
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00014 Score=83.89 Aligned_cols=184 Identities=20% Similarity=0.172 Sum_probs=136.6
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh-hhH
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 365 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 365 (2015)
.+.+.+.+.++..|..|+..|..++....-....+ ..+++.|.+.+.+.+..+...|+.+|+.|+..-...-.. .-.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 85 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 85 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence 56677888889999999999999885321000000 136778888899888999999999999998532111111 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000156 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2015)
..+|.++..+++....++..+..+|..+... .... ...++.+...+++.++.+|..++..|..+....+ ...
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~ 163 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EAI 163 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHH
Confidence 5799999999999999999999999998743 1010 1467888899999999999999999998655332 211
Q ss_pred HH-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000156 440 LK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2015)
Q Consensus 440 ~~-~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~ 474 (2015)
.. .-..++|.++.++.+.+++||..|..+|+.+..
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 11 125588999999999999999999999988874
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00036 Score=80.52 Aligned_cols=189 Identities=17% Similarity=0.125 Sum_probs=139.7
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcC-CCCCCCC-hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh-hhH
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 365 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki~~~~-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 365 (2015)
.+...+.+.+...|..++..|..+... +.....- -...++.|...+.+.+..++..|+.+|+.|+..-...... .-.
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 127 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 127 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 466667888899999999999998743 2110000 0135778888888889999999999999998532211111 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000156 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2015)
..+|.|++.+++....++..+..+|..+... .... ..+++.+...+.+.++.+|..++..|..+... .+...
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~ 205 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PTSAI 205 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHH
Confidence 5899999999999999999999999988753 1000 23678889999999999999999999887653 22222
Q ss_pred HHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 440 LKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 440 ~~~-l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
... -..+++.+...+.+.+++||..|..+|+.+....+..
T Consensus 206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 111 1457899999999999999999999999999876543
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=97.85 E-value=0.053 Score=75.49 Aligned_cols=198 Identities=11% Similarity=0.058 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHhhhc-chhhhHhHHHHHHHHh
Q 000156 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD--VNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKL 375 (2015)
Q Consensus 299 WkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D--~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp~LL~kl 375 (2015)
|+.=++.|..+..+... .-..-++..|.+.+.+ .+=..+..++-|+|.++.++..+ ..+++..++|.|+..+
T Consensus 430 f~~~Rd~L~~l~~l~~~-----~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~ 504 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVI-----DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLC 504 (1023)
T ss_dssp HHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHH-----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhh
Confidence 44334666655554320 1122345555555553 56778889999999999998765 6689999999999887
Q ss_pred c-----cCcHHHHHHHHHHHHHHHHh---cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH-------H
Q 000156 376 K-----EKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV-------L 440 (2015)
Q Consensus 376 k-----dkk~~V~~aa~~aL~al~~~---~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l-------~ 440 (2015)
. |.|..|++.+.-++...... ....+..++..++.++.+.+|.+...++..+..+.+.+..... .
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~ 584 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 5 56777777776666543322 1223667788888889888999999999999988887764321 2
Q ss_pred HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchH-HHHHHHhccHHHHHHHHHHHh
Q 000156 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIA 501 (2015)
Q Consensus 441 ~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~-~~~~l~~Ld~~~~kkI~e~~~ 501 (2015)
+++..++..+..++++-.+.-+....++++++....+... ...++..|-+.-..++++.++
T Consensus 585 p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~ 646 (1023)
T 4hat_C 585 PFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVE 646 (1023)
T ss_dssp CHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHH
Confidence 4678888888999999999999999999999999998654 556777766555555555543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=97.82 E-value=6.3e-05 Score=84.85 Aligned_cols=184 Identities=17% Similarity=0.215 Sum_probs=132.1
Q ss_pred chHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000156 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (2015)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~ 934 (2015)
.+-|...+.+.++.+|.+|+..|..+..........-.-...++.|...|.+.+..++..|+.+++.|+..-........
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 45677888999999999999999998742111000000125678889999999999999999999998743211111221
Q ss_pred -hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000156 935 -KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (2015)
Q Consensus 935 -~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2015)
...+|.++..|.+.+..++..|..+|..+..... -..+++.+...|.++ ++.+|..++..|.........
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHH
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCcH
Confidence 2478999999999999999999999999874321 134678888888876 578898888888765542111
Q ss_pred CC-C--hhhhHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000156 1007 FP-D--AAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (2015)
Q Consensus 1007 ~~-~--~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~ 1040 (2015)
.. . ....+..+...+.+.+.+||+.|..+|..+.
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 10 1 1234566888999999999999999987763
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.9e-05 Score=88.35 Aligned_cols=185 Identities=12% Similarity=0.117 Sum_probs=135.8
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcC-CCCCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hH
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 365 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki~~~~y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 365 (2015)
.+...+.+.++..|..|+..|..++.. +.....-. ...++.|...+.+.+..++..|+.+|+.|+..-....... -.
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC
Confidence 466677888899999999999998742 21100000 1367788888998899999999999999986433321222 23
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000156 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l-----~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (2015)
..+|.|++.+.+....|+..+..+|..+........ ..+++.+...+++.++.+|..++..|..+.... +....
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~ 216 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQ 216 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHH
Confidence 589999999999999999999999998875310000 245788889999999999999999999876432 22222
Q ss_pred Hhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000156 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2015)
Q Consensus 441 ~~l-~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~ 474 (2015)
... ..+++.+..++.+.+++||..|..+|+.+.+
T Consensus 217 ~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 217 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 222 3488999999999999999999999986643
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0031 Score=67.24 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=120.2
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhChhhHH
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEK 932 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~f~~ 932 (2015)
+..+++..+.|+-|.+|+.|+.-+..++.+ .|..+..+..-|...+ ++--..+-+.-.+.+|.++..- + .
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~-----~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-P---e 103 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKT-----REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-P---E 103 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-H---H
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-H---H
Confidence 556788889999999999999999888753 1222233333333333 2333334344445555555322 1 3
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--C
Q 000156 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--P 1008 (2015)
Q Consensus 933 ~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~ 1008 (2015)
.++.++|.++..+.-..+.+|--..-+|..++...+ +..++..+...|.++ +-.-|..+++|+.. ++.. .
T Consensus 104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltsk--d~~Dkl~aLnFi~a----lGen~~~ 177 (253)
T 2db0_A 104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSK--NREDKLTALNFIEA----MGENSFK 177 (253)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS--SHHHHHHHHHHHHT----CCTTTHH
T ss_pred HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHH----HhccCcc
Confidence 467889999999988888888888889999998875 455666777777766 45678999999863 3321 2
Q ss_pred ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000156 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~ 1041 (2015)
.+.+.++-++..|.|++.-||..|.++|..+..
T Consensus 178 yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 178 YVNPFLPRIINLLHDGDEIVRASAVEALVHLAT 210 (253)
T ss_dssp HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHH
Confidence 345666779999999999999999999986643
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0012 Score=78.90 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHH-HhcccCHHHHHHHHHHHHHHHHHhhhcchhhh--HhHHHHHHHH
Q 000156 300 SERKDAVAELTKLASTKRIAPGDF--TEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEK 374 (2015)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y--~~l~~~L~k-~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~k 374 (2015)
.+|..|++.|..++...... .++ ...++.|.. .+.+.+..|+..|+.+|+.++..-. ....++ ...+|.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna-~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHH-HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhH-HHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHH
Confidence 46788888888877432100 011 123455666 8888899999999999999986421 122221 2588999999
Q ss_pred hcc-CcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHH
Q 000156 375 LKE-KKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYV 447 (2015)
Q Consensus 375 lkd-kk~~V~~aa~~aL~al~~~~~~~l-----~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~ 447 (2015)
+.. .+..|+..+.-||..++.++.... ...++.|...|++.++.+|..++..|..+....+ ....... .-++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcCCH
Confidence 984 588999999999999986411111 1356788888999999999999999988776532 2221112 3588
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 448 PICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 448 p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
|.|+.+|.+.++.||+.|..+|+.+...
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999865
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0021 Score=71.75 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=146.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
.++..+.|+|-.++..++..+++++..+++....-.+.++++.+...+.+.|-.|...|++|++.|......+=+.| ..
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y-~K 115 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF-LK 115 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH-HH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH-HH
Confidence 46677899999999999999999998764444444468899999999999999999999999999998776554444 45
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHH
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2015)
++-++.....+++..++..+.+.++.+ ..+. ...+...+...+.++ +++++...+..+.+.......+..+..++.
T Consensus 116 l~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i~~~I~~ 192 (265)
T 3b2a_A 116 AAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGHLTLILD 192 (265)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCCGGGTTT
T ss_pred HHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 778888889999999999999999998 4444 577888888888655 689999999998875554444455677777
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHH
Q 000156 1016 PASIAMTDKSSDVRKAAEACIVEIL 1040 (2015)
Q Consensus 1016 pl~~~L~D~~~~VR~aA~~~L~~l~ 1040 (2015)
-+-..|...++.+++-|-.++..+.
T Consensus 193 eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 193 EIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp THHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7888898889999999988776654
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0034 Score=70.02 Aligned_cols=181 Identities=14% Similarity=0.133 Sum_probs=140.9
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000156 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2015)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2015)
+++.+.+.+++=+.-..|++.|..|+.+--+.+.+|..+..+|...+++.|-.+...|+..++.+ ......+.+
T Consensus 78 d~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V 151 (265)
T 3b2a_A 78 DVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLV 151 (265)
T ss_dssp HHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHH
Confidence 35666677777777788999999999776788889999999999999999999999888888877 233446677
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh
Q 000156 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (2015)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~--~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~ 445 (2015)
+..++..++.++..|..++..++..+..++ .-.+..++..|..-+++++|.++.-++..+.+++...-...+...+..
T Consensus 152 ~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~ 231 (265)
T 3b2a_A 152 RTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK 231 (265)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH
Confidence 778888889999999999999999998761 133788999999999999999999999999998876433323233333
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Q 000156 446 YVPICMECL-NDGTPEVRDAAFSVLAAIAK 474 (2015)
Q Consensus 446 l~p~l~k~L-~Ds~~~VR~aA~~al~~l~~ 474 (2015)
+...+.... -...|.+|+.|+.....+-.
T Consensus 232 ~~~~v~~l~~~~~~~~~~~ka~~v~~~le~ 261 (265)
T 3b2a_A 232 ISRIVDGLVYREGAPIIRLKAKKVSDLIDS 261 (265)
T ss_dssp HHHHHHHGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Confidence 444444444 58899999999877665543
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0023 Score=78.90 Aligned_cols=150 Identities=11% Similarity=0.057 Sum_probs=101.7
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000156 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2015)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2015)
+.+...+-+.+|..|..|.-.|+.+++......+-. ...|. -.|++++..||- ..|.-|+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~~N~---DLAvRLLCVLAL---DRFGDYV--- 236 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IRVDS---KLFSKIYEILVT---DKFNDFV--- 236 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CCCCT---THHHHHHHHHHH---BCCBBCS---
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------ccccH---HHHHHHHHHHHh---ccccccc---
Confidence 456667889999999999999999884211111100 22232 445555555542 2233332
Q ss_pred HHHHHHHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000156 368 LPVLLEKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (2015)
Q Consensus 368 lp~LL~klkd-kk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (2015)
.| --..||+.+.++|.++ .+-... -.++..++..+.+..|++|.+.+.-|..+ ...+.. ++.+
T Consensus 237 --------SDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~V 300 (800)
T 3oc3_A 237 --------DDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGL 300 (800)
T ss_dssp --------SSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHH
T ss_pred --------cCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHH
Confidence 12 2457999999999999 661112 35666666667889999999988777655 222222 6889
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 447 VPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 447 ~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
+++++.+|.|.+.+||.+|+++|.-+.
T Consensus 301 v~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 301 CRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 999999999999999999999997776
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.47 Score=61.52 Aligned_cols=372 Identities=12% Similarity=0.050 Sum_probs=202.5
Q ss_pred hhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh--HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hhh----
Q 000156 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---EAV---- 126 (2015)
Q Consensus 56 ~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~--~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~---~~~---- 126 (2015)
.+-.++...|..+|..|..+|..+...... .... -...+|.||+-.-...+.+++.|..+|..+... +.-
T Consensus 52 ~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 52 EVIAMLGFRLDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 344667788999999999888766543222 1111 124678999874346899999999888888753 111
Q ss_pred -hhHHHHHHHHhhc-CChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhhhhhh------------------cCCChhHHH
Q 000156 127 -DVFLDVMEKAIKN-KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF------------------DHQDQNVRA 186 (2015)
Q Consensus 127 -~~v~~~L~~~~~~-KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll------------------~~~d~~VR~ 186 (2015)
...++.|+..+.+ ..+.++..+..+|..+-...-.+..=++.-++.|..++ ...|..|+.
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~ 210 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLT 210 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHH
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHH
Confidence 2346667777765 56777777776666543311111100122344454443 223679999
Q ss_pred HHHHHHHHHHHHhCCchhhHHHh--hhChHHHHHHHHHHHHhcCCCCCCCc----cchhhhhHhhhhhccccCCCCCCCC
Q 000156 187 SSKGLTLELCRWIGKDPVKTILF--EKMRDTMKKELEVELVNVSGTARPTR----KIRAEQDKELGQELISEDVGPGPSE 260 (2015)
Q Consensus 187 ~a~~l~~ely~~lG~~~l~~~l~--~~Lk~~q~keLe~~f~k~~~~~~P~R----~~rs~~~~~~~~ea~~~~~~~~~~~ 260 (2015)
.|..++..|-..- ++ .+..+. ..+-+..+.-|....++......-.+ .+|--.. ....+. .
T Consensus 211 nAa~~L~NLs~~~-~~-~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~-~~~~e~----~------ 277 (584)
T 3l6x_A 211 NTAGCLRNVSSER-SE-ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY-QVHREI----P------ 277 (584)
T ss_dssp HHHHHHHHHTSSC-HH-HHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT-THHHHS----T------
T ss_pred HHHHHHHHHhcCC-HH-HHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc-cccccc----c------
Confidence 9988887775311 11 112221 23333334444333222110000000 0000000 000000 0
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHHhc-ccC
Q 000156 261 ESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR-IAPGDFTEVCRTLKKLIT-DVN 338 (2015)
Q Consensus 261 ~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~k-i~~~~y~~l~~~L~k~l~-D~N 338 (2015)
..+.| .+. .+ . +........++ +..-.-..+++.|...+. ..+
T Consensus 278 --------~~~~~--~~~------~~-~------------------~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~ 322 (584)
T 3l6x_A 278 --------QAERY--QEA------AP-N------------------VANNTGTSPARGYELLFQPEVVRIYISLLKESKT 322 (584)
T ss_dssp --------TCCC-----------------------------------------CCCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred --------chhhh--hhh------cc-c------------------ccccccccCchhHHHHhcccHHHHHHHHHccCCC
Confidence 00001 000 00 0 00000111111 100001355677777886 557
Q ss_pred HHHHHHHHHHHHHHHHHhh---hcchhhh--HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHH
Q 000156 339 IAVAVEAIQAIGNLARGLR---THFSGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDV 408 (2015)
Q Consensus 339 ~~V~~~A~~~l~~La~~L~---~~f~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l-----~~il~~l 408 (2015)
..+...|+.+|..|+.+-. ..+...+ ...+|.|.+.+......|+.++..||..+... ... ...++.+
T Consensus 323 ~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~~I~~g~ip~L 400 (584)
T 3l6x_A 323 PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD--ARNKELIGKHAIPNL 400 (584)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hhHHHHHHhCCHHHH
Confidence 8899999999999986421 1222222 36699999999999999999999999999875 222 2346777
Q ss_pred HHHhhcC--------ChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhC
Q 000156 409 KTSVKNK--------VPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDG--TPEVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 409 ~~~L~~K--------np~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~L~Ds--~~~VR~aA~~al~~l~~~~G 477 (2015)
...|.+. +..+...++..|..++...+.. .... -...+|.|+.++.+. .+.++++|..+|..++ .
T Consensus 401 V~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~-~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~---~ 476 (584)
T 3l6x_A 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA-AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW---G 476 (584)
T ss_dssp HHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH---T
T ss_pred HHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH---c
Confidence 7777654 3467777888887766543322 1111 135789999999876 7888888887776554 5
Q ss_pred chHHH
Q 000156 478 MRPLE 482 (2015)
Q Consensus 478 e~~~~ 482 (2015)
.+.+.
T Consensus 477 ~~elr 481 (584)
T 3l6x_A 477 YKELR 481 (584)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 55443
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=3.5 Score=58.59 Aligned_cols=202 Identities=10% Similarity=0.039 Sum_probs=117.6
Q ss_pred ChHHHHHHHHHHHHHHHhccccC-CCCChhhHHHHHHhcc---ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHH
Q 000156 866 DWKVRLESIEAVNKILEEANKRI-QPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 941 (2015)
Q Consensus 866 ~Wk~R~eale~L~~ll~~a~~~I-~~~~~~eL~~~L~~rL---~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~l 941 (2015)
.|..+......++.++....... .+.....++..|...+ ...+..++..++.+++.+..-+... ..++..++..|
T Consensus 499 ~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~-p~~L~~vL~~l 577 (1204)
T 3a6p_A 499 SFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYR-PEFLPQVFSKL 577 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTC-GGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 57777666666666665431111 1222112333333332 3457778899999998877655321 24677777777
Q ss_pred HHHhCC------------CcHHHHHHHHHHHHHHHHhcC--c----hhhHHHHHHHHhcCC-CChhHHHHHHHHHHHHhc
Q 000156 942 LKCLGD------------NKKHMRECTLTVLDAWLAAVH--L----DKMVPYVTTALTDAK-LGAEGRKDLFDWLSKQLT 1002 (2015)
Q Consensus 942 l~~L~D------------~k~~Vr~aa~~aL~~i~~~~g--l----~~ll~~l~~~L~~~k-~~p~~R~~~l~~L~~~l~ 1002 (2015)
+..+.+ ..+.||.+|..++..++..++ + +.+...+...+.... .+...+..+...+.-.-.
T Consensus 578 l~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~ 657 (1204)
T 3a6p_A 578 FSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISN 657 (1204)
T ss_dssp HHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHG
T ss_pred HHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhc
Confidence 777766 456899999999999999885 2 333334444454333 334556666666543311
Q ss_pred cCCCC---CC-hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHH--H-------HHHHHHhh
Q 000156 1003 GLSGF---PD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL--A-------LILERIKL 1069 (2015)
Q Consensus 1003 ~~~~~---~~-~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~--~-------~i~~~l~k 1069 (2015)
..+.. .. +..++.|++..+.+ ++++. +......|+..+|-+....+....++..+ . .+...+++
T Consensus 658 ~~~~~~~~~~~l~~ll~P~~~~w~~--~~~~~-~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r 734 (1204)
T 3a6p_A 658 QFKNYERQKVFLEELMAPVASIWLS--QDMHR-VLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKR 734 (1204)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHSC--HHHHH-HHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcc--HHHHH-hhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 12221 22 56677888887764 34555 34444788888887766555555554322 3 56667777
Q ss_pred cc
Q 000156 1070 NG 1071 (2015)
Q Consensus 1070 ~~ 1071 (2015)
.+
T Consensus 735 ~~ 736 (1204)
T 3a6p_A 735 TC 736 (1204)
T ss_dssp CC
T ss_pred hc
Confidence 53
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0058 Score=72.97 Aligned_cols=169 Identities=13% Similarity=0.124 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHh-ccccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHHHHH
Q 000156 868 KVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDIL 942 (2015)
Q Consensus 868 k~R~eale~L~~ll~~a~--~~I~~~~~~eL~~~L~~-rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~--~~llp~ll 942 (2015)
..|..|++.|..++..-. ..+.. .| .++.|.. .|...+..|+..|+.+|+.++.. .+.....+ ...+|.|+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~--~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQ--LS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHH--TT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHH--cC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHH
Confidence 468889999999886210 11110 12 3466777 88889999999999999998853 23333332 25889999
Q ss_pred HHhC-CCcHHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC-CCh--h
Q 000156 943 KCLG-DNKKHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA--A 1011 (2015)
Q Consensus 943 ~~L~-D~k~~Vr~aa~~aL~~i~~~~g--l-----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~-~~~--~ 1011 (2015)
..|. +.+..+|..|.-||..++.... . ...+|.+...|.++ ++.+|..++..|.......... ..+ .
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv~~ 208 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCSM 208 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence 9998 4588999999999999885432 1 23577888888876 5788888877776544432111 111 2
Q ss_pred hhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1012 ~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
..+++++..|.+.+.+||..|..+|..+...
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 4667799999999999999999999988866
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00015 Score=75.76 Aligned_cols=119 Identities=15% Similarity=0.068 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH
Q 000156 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404 (2015)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~i 404 (2015)
.-...|...+.|.+..++..|+.+|+.+. . + . ++.|++.++|+.+.||..+..+|..+. -...
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~---~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~------~~~a 74 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMG----D---E---A-FEPLLESLSNEDWRIRGAAAWIIGNFQ------DERA 74 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCS----S---T---T-HHHHHHGGGCSCHHHHHHHHHHHGGGC------SHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhC----c---h---H-HHHHHHHHcCCCHHHHHHHHHHHHhcC------CHHH
Confidence 44566777788888888888877776542 1 1 1 588999999999999998877776442 2467
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000156 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (2015)
Q Consensus 405 l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~ 471 (2015)
++.+...+++.+|.||..++..|..+- -+..++.|.+.+.|.++.||.+|..+|+.
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~-----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHC-----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 888889999999999999998887641 13457889999999999999999998864
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.11 Score=68.83 Aligned_cols=363 Identities=13% Similarity=0.103 Sum_probs=197.6
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhccccc----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~----~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (2015)
+-+.+.+.+. ..|.-|.-.|.++....+... ...+.+.++|.. .....++.+++.|.++... +.. +
T Consensus 299 ~~L~~~l~~~--~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~------~~~~~~~~AvEgLaYLSl~-~~V-K 368 (778)
T 3opb_A 299 QLLERSLNVE--DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISR------RIVPKVEMSVEALAYLSLK-ASV-K 368 (778)
T ss_dssp HHHHHHTTSG--GGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTT------CCHHHHHHHHHHHHHHTTS-SHH-H
T ss_pred HHHHHHhccH--HHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHhCC-HHH-H
Confidence 3444444442 667777777877765532211 123445555532 1112267788888766432 111 1
Q ss_pred hHH---HHHHHHHHhhhcchhhhHHHHHHHHHHHhhhC--h-----hHHHHHHHHHhhhCCChhHHH---------HHHH
Q 000156 680 KCV---VLCLLGISERVADIKTRAHAMKCLTTFSEAVG--P-----GFIFERLYKIMKDHKNPKVLS---------EGIL 740 (2015)
Q Consensus 680 ~~~---~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~--~-----~~Vl~~L~~~l~~~KnpKv~~---------~~l~ 740 (2015)
..+ ..++..|++-+.+.........++..++.... + +.-+.+|.+++ +++.|+... +...
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A-~~~~p~~~~~d~~~~~~~~v~~ 447 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXX-XXXXPAADKVGAEKAAKEDILL 447 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------------CCTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhc-cccCcccCcccccccchHHHHH
Confidence 111 33566666665542222334444444443221 1 12345555544 222333221 1111
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000156 741 WMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (2015)
Q Consensus 741 ~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~ 820 (2015)
+-..++-+. .+++.+..+ +.+.++.+|..|..++..|... +..+..+-. ++
T Consensus 448 ~~~~~l~ea--------GvIp~Lv~L-l~S~s~~~re~A~~aL~nLS~d--~~~R~~lvq------------------qG 498 (778)
T 3opb_A 448 FNEKYILRT--------ELISFLKRE-MHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQ------------------QG 498 (778)
T ss_dssp HHHHHTTTT--------THHHHHHHH-GGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHH------------------TT
T ss_pred HHHHHHHHC--------cCHHHHHHH-HcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHH------------------CC
Confidence 122222222 256666677 8888999999999998887522 222222200 00
Q ss_pred CCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCCh---HHHHHHHHHHHHHHHhccccCCC--CChhh
Q 000156 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDW---KVRLESIEAVNKILEEANKRIQP--AGTGE 895 (2015)
Q Consensus 821 ~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~W---k~R~eale~L~~ll~~a~~~I~~--~~~~e 895 (2015)
..+.++..+.+... ..|..|...|..++...++.+.. ....+
T Consensus 499 ---------------------------------al~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~ 545 (778)
T 3opb_A 499 ---------------------------------AVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALN 545 (778)
T ss_dssp ---------------------------------HHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTT
T ss_pred ---------------------------------CHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcccc
Confidence 01123333333321 36889999999998654433321 11126
Q ss_pred HHHHHHhccc-cchH-------------HHHHHHHHHHHHHHHHhC---hhhH-Hhhh--HHHHHHHHHhCCCcHHHHHH
Q 000156 896 LFGGLRGRLY-DSNK-------------NLVMATLITLGAVASAMG---PAVE-KSSK--GVLSDILKCLGDNKKHMREC 955 (2015)
Q Consensus 896 L~~~L~~rL~-DsN~-------------~V~~~Al~~l~~La~alg---~~f~-~~~~--~llp~ll~~L~D~k~~Vr~a 955 (2015)
.++.|...|. +... .-+..|+.+|..||..-+ .+.. ..++ ..+|.+...+.+.+..||.+
T Consensus 546 aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrA 625 (778)
T 3opb_A 546 AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRS 625 (778)
T ss_dssp HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHH
T ss_pred chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHH
Confidence 7888888886 2221 126689999999987543 2332 3444 47899999999999999999
Q ss_pred HHHHHHHHHHhcC-c-hhh-----------HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC----CChhhhHHHHH
Q 000156 956 TLTVLDAWLAAVH-L-DKM-----------VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPAS 1018 (2015)
Q Consensus 956 a~~aL~~i~~~~g-l-~~l-----------l~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~ 1018 (2015)
|.+++..++.... + ..+ ++.+...+... +...|..+...|+-.-...+.. -.....+..++
T Consensus 626 A~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll 703 (778)
T 3opb_A 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAI 703 (778)
T ss_dssp HHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHH
Confidence 9999999996542 2 233 44566666654 5788888876666432222210 11134666788
Q ss_pred hhcCC--CChHHHHHHHHHHHHHHH
Q 000156 1019 IAMTD--KSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 1019 ~~L~D--~~~~VR~aA~~~L~~l~~ 1041 (2015)
..|.| .+.++|..+..++..+..
T Consensus 704 ~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 704 QVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHH
Confidence 88888 899999999999998886
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=96.64 E-value=3.5 Score=56.96 Aligned_cols=171 Identities=15% Similarity=0.124 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc----ccCHHHHHHHHHHHH--HHHHHhhhcchhhhHhHHHHHHH
Q 000156 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT----DVNIAVAVEAIQAIG--NLARGLRTHFSGSSRFLLPVLLE 373 (2015)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~----D~N~~V~~~A~~~l~--~La~~L~~~f~~~~~~llp~LL~ 373 (2015)
+.|+.|=..|....+ ..++.|..+++.+.+.+. +.+..-...|+-+|. .+...+..++ .+...+++.|+.
T Consensus 148 ~VR~~AQ~~L~~~~~---~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~-~~~~~~~~ali~ 223 (997)
T 1vsy_5 148 DIYKPAQGTLVHCMK---QLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDY-KDIGRLIFLLIE 223 (997)
T ss_dssp HHHHHHHHHHHHHHT---TBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcCh-HHHHHHHHHHHH
Confidence 467777777776653 345667777766666553 556666777877665 4555555444 568899999999
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCC--------------------------------------hH----hHHHHHHHH
Q 000156 374 KLKEKKPTVAESLTQTLQAMHKAGCLN--------------------------------------LV----DVVEDVKTS 411 (2015)
Q Consensus 374 klkdkk~~V~~aa~~aL~al~~~~~~~--------------------------------------l~----~il~~l~~~ 411 (2015)
.....|+.|+.-+..+...+......+ .. .+...++..
T Consensus 224 ~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~~~~L~~~l~~~ 303 (997)
T 1vsy_5 224 CCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSLLVDLQDKLLDK 303 (997)
T ss_dssp TCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998889988887777777666541100 00 111111222
Q ss_pred h-hcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 412 V-KNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 412 L-~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
+ .+.. |....-++.+|..++.+... ..-+.++..+++.+.|.+|.+|..|..++..++..+-.
T Consensus 304 ~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~ 369 (997)
T 1vsy_5 304 LDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIIS 369 (997)
T ss_dssp HHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2 1233 66666655554443322211 11256788899999999999999999999888766543
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.28 Score=63.69 Aligned_cols=346 Identities=10% Similarity=0.060 Sum_probs=192.4
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHH--HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhC
Q 000156 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG 714 (2015)
Q Consensus 639 ~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~ 714 (2015)
...++.+|. ..+..++..+...|..++..... .+..+ .-.||.||.-|.. ..++..|..+|..++...+
T Consensus 50 i~~LV~~L~------s~~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 50 LPEVIAMLG------FRLDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp HHHHHHHTT------CSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHC------CCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence 556666653 23456667677777766642111 11222 1257888887755 5688899999998875211
Q ss_pred hh---H-----HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC-CC---ChhhHHHHHH--hcCC-----------C
Q 000156 715 PG---F-----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HL---KLKDLIDFCK--DTGL-----------Q 769 (2015)
Q Consensus 715 ~~---~-----Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~-~l---~~k~li~~l~--~~gL-----------~ 769 (2015)
.+ . .++.|+..+....++.++..+...|.++-..-... .+ -+..|+..+. ..|. .
T Consensus 123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 11 1 35666666654567777777665555553210000 00 1233444331 0011 2
Q ss_pred CCchhHHHHHHHHHHHHHHHhChhHHhhh---hhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCC
Q 000156 770 SSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (2015)
Q Consensus 770 ~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L---~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lp 846 (2015)
..+..|+..|..+|..|... ++..+..+ +.+.+.++..|.....+....
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~--------------------------- 254 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSD--------------------------- 254 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCS---------------------------
T ss_pred cccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCcc---------------------------
Confidence 23578999999998887532 22222222 455667777776554322110
Q ss_pred CcccccccchHHHHhcCCCChHHHHHHHHHHHHHH-------------------------HhccccCCCCChhhHHHHHH
Q 000156 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL-------------------------EEANKRIQPAGTGELFGGLR 901 (2015)
Q Consensus 847 rvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll-------------------------~~a~~~I~~~~~~eL~~~L~ 901 (2015)
.+....|+-.|..+. ....+.+..-.-...+..|.
T Consensus 255 --------------------~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll 314 (584)
T 3l6x_A 255 --------------------SKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYI 314 (584)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHH
Confidence 000001111111111 00011111100124567777
Q ss_pred hcccc-chHHHHHHHHHHHHHHHHHhCh---hhHHhh--hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch-----
Q 000156 902 GRLYD-SNKNLVMATLITLGAVASAMGP---AVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----- 970 (2015)
Q Consensus 902 ~rL~D-sN~~V~~~Al~~l~~La~alg~---~f~~~~--~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~----- 970 (2015)
..|.+ .+..+...|+.+|..|+..-++ .+...+ ...+|.|++.|......++..|..+|..+.......
T Consensus 315 ~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~ 394 (584)
T 3l6x_A 315 SLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGK 394 (584)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHh
Confidence 77754 4788999999999999753322 222233 356999999999999999999999999998765533
Q ss_pred hhHHHHHHHHhcCCC------ChhHHHHHHHHHHHHhccCCCC-CCh--hhhHHHHHhhcCCC--ChHHHHHHHHHHHHH
Q 000156 971 KMVPYVTTALTDAKL------GAEGRKDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAMTDK--SSDVRKAAEACIVEI 1039 (2015)
Q Consensus 971 ~ll~~l~~~L~~~k~------~p~~R~~~l~~L~~~l~~~~~~-~~~--~~ll~pl~~~L~D~--~~~VR~aA~~~L~~l 1039 (2015)
..+|.+...|.+... +.++...++..|...+...... ..+ ...+++|+.+|.+. ...++++|..+|..+
T Consensus 395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 355667777765421 2345666776666554322111 111 23566788888775 788888888777554
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=96.46 E-value=5.8 Score=55.21 Aligned_cols=173 Identities=10% Similarity=0.047 Sum_probs=116.8
Q ss_pred hHHHHHHhcccc--chHHHHHHHHHHHHHHHHHhChh-hHHhhhHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHh
Q 000156 895 ELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLG-----DNKKHMRECTLTVLDAWLAA 966 (2015)
Q Consensus 895 eL~~~L~~rL~D--sN~~V~~~Al~~l~~La~alg~~-f~~~~~~llp~ll~~L~-----D~k~~Vr~aa~~aL~~i~~~ 966 (2015)
-++..|...+.+ .++..+..++-++|.|+.++..+ ..+++..++|.++..+. |.+..||..+.-+++.+.+-
T Consensus 451 ~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w 530 (1023)
T 4hat_C 451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF 530 (1023)
T ss_dssp HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH
Confidence 344555555543 57999999999999999998876 67899999999999886 57778888887888754443
Q ss_pred cC-----chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC----------CCChhhhHHHHHhhcCCCChHHHHH
Q 000156 967 VH-----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG----------FPDAAHLLKPASIAMTDKSSDVRKA 1031 (2015)
Q Consensus 967 ~g-----l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~----------~~~~~~ll~pl~~~L~D~~~~VR~a 1031 (2015)
+. +..++..+...+.+. +|.+...++..+...-..... .+.+..++.-+..++.+-...-+..
T Consensus 531 l~~~~~~L~~vl~~L~~~l~~~--~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 531 LKAHWNFLRTVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 31 455666677777544 355555555444433222111 1233444444666777778888899
Q ss_pred HHHHHHHHHHHcChhH-HHHHhccCChHHHHHHHHHHhh
Q 000156 1032 AEACIVEILRAGGQET-IEKNLKDIQGPALALILERIKL 1069 (2015)
Q Consensus 1032 A~~~L~~l~~~~G~~~-~~~~l~~L~~~~~~~i~~~l~k 1069 (2015)
+.++++.++...|.+. ...++..|-+.-...++..++.
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~ 647 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQ 647 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999998654 5556666665555555555543
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.051 Score=66.12 Aligned_cols=282 Identities=10% Similarity=0.062 Sum_probs=131.1
Q ss_pred CCCchhHHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhhChh--HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhC
Q 000156 675 TKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG--FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750 (2015)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgD~--K~r~~a~~~L~~l~e~~~~~--~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG 750 (2015)
..|+...+..+.+.++.-+... ..|....-.+..++.. ..+ .+.+.+.+-+ +++||-+|.-++..|+.+...
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~-- 134 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDM-TGKEDSYRGPAVRALCQITDS-- 134 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHH-HSSCHHHHHHHHHHHHHHCCT--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhc-CCCcHhHHHHHHHHHhcCCCH--
Confidence 4667666667777777655543 4566666666666554 211 3566677765 799999999999999988631
Q ss_pred CCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccC
Q 000156 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (2015)
Q Consensus 751 ~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2015)
. =+..+...++.+ +.|.||.||.+|.-+...||....+-++.|++.
T Consensus 135 --~-m~~~l~~~lk~~-L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~------------------------------ 180 (355)
T 3tjz_B 135 --T-MLQAIERYMKQA-IVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNE------------------------------ 180 (355)
T ss_dssp --T-THHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHH------------------------------
T ss_pred --H-HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHH------------------------------
Confidence 1 146788889997 999999999999999877775443333333222
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhc-cccchH
Q 000156 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNK 909 (2015)
Q Consensus 831 ~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~r-L~DsN~ 909 (2015)
+.+.+.|.|.-+-..|+-.+.++... . ...+..++..|... +. +.
T Consensus 181 ---------------------------l~~ll~d~n~~V~~~Al~lL~ei~~~--d---~~a~~kLv~~l~~~~l~--~~ 226 (355)
T 3tjz_B 181 ---------------------------AQEAASSDNIMVQYHALGLLYHVRKN--D---RLAVSKMISKFTRHGLK--SP 226 (355)
T ss_dssp ---------------------------HHHHTTCSSHHHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHSSCCS--CH
T ss_pred ---------------------------HHHHhcCCCccHHHHHHHHHHHHHhh--c---hHHHHHHHHHHhcCCCc--Ch
Confidence 22223334433334455555544321 0 00012233333221 11 12
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCCh
Q 000156 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 987 (2015)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~p 987 (2015)
-....-++++..++. .+-......++..+...|+.....|.-.|..++-.+-.... +......+...|.++ .+
T Consensus 227 ~~q~~llr~l~~~~~---~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~--d~ 301 (355)
T 3tjz_B 227 FAYCMMIRVASRQLE---DEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSP--KA 301 (355)
T ss_dssp HHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSS--SS
T ss_pred HHHHHHHHHHHHhcc---ccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCC--Cc
Confidence 222222333222221 11122345667777778888888888777788777654211 223344566667665 36
Q ss_pred hHHHHHHHHHHHHhccCCCCCChhhhHH-HHHhhcCCCChHHHHHHHHHH
Q 000156 988 EGRKDLFDWLSKQLTGLSGFPDAAHLLK-PASIAMTDKSSDVRKAAEACI 1036 (2015)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~~~~~~ll~-pl~~~L~D~~~~VR~aA~~~L 1036 (2015)
.+|--++..|.......+ ....-+. -+..|+.|+|..++--|...|
T Consensus 302 niryvaLr~L~~l~~~~P---~~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 302 ALRYAAVRTLNKVAMKHP---SAVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp SSHHHHHHCC----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHCc---HHHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 789999988887665443 2233233 388899999998887765544
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=7.7 Score=55.17 Aligned_cols=185 Identities=12% Similarity=0.028 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhc-------ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH
Q 000156 299 WSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT-------DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (2015)
Q Consensus 299 WkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~-------D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 369 (2015)
=..|.-|+..|+..+.. ..+...+...|-..|...+. +....|+...+.++..|++.- |-..+..+++
T Consensus 61 ~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d---~p~~Wp~ll~ 137 (1204)
T 3a6p_A 61 AIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKRE---WPQHWPDMLI 137 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH---STTTCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHh---CcccchHHHH
Confidence 34566666666665432 22333333333333434332 145778888889998888763 3345678888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHh-cC-----------------CChHhHHHHHHHHhhc-----------------
Q 000156 370 VLLEKLKEKKPTVAESLTQTLQAMHKA-GC-----------------LNLVDVVEDVKTSVKN----------------- 414 (2015)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~-~~-----------------~~l~~il~~l~~~L~~----------------- 414 (2015)
.|+..+.. ....++.+..+|..+..- .. ..+..+++.+...+.+
T Consensus 138 ~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~ 216 (1204)
T 3a6p_A 138 ELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESK 216 (1204)
T ss_dssp HHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhh
Confidence 88887765 455677777777777542 00 0122344434334432
Q ss_pred --CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc-hHHHHHHHhcc
Q 000156 415 --KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM-RPLERSIEKLD 489 (2015)
Q Consensus 415 --Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge-~~~~~~l~~Ld 489 (2015)
.++.++..+++.+..++.-.+...+...-..+++.+..++.| +++|.+|.+||..++..-.. ....+++.-+.
T Consensus 217 ~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~ 292 (1204)
T 3a6p_A 217 AQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFG 292 (1204)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGS
T ss_pred hhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHh
Confidence 123455566666555444223222222112478888888774 78999999999999875432 22334555554
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.44 Score=60.40 Aligned_cols=387 Identities=11% Similarity=0.010 Sum_probs=202.9
Q ss_pred hHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh--HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh-h-hhh-----
Q 000156 57 FKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL-E-AVD----- 127 (2015)
Q Consensus 57 ~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~--~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~-~-~~~----- 127 (2015)
+-+++...|..+|..|..+|..+...... .... -...+|.||+-.-...+.++..|..++..+.-. + .-.
T Consensus 7 lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~ 85 (457)
T 1xm9_A 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85 (457)
T ss_dssp HHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 44566777889999999999887643221 1111 234688888763336788898888888877743 1 112
Q ss_pred hHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhhhhhh--------cC--------CChhHHHHHHH
Q 000156 128 VFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF--------DH--------QDQNVRASSKG 190 (2015)
Q Consensus 128 ~v~~~L~~~~~-~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll--------~~--------~d~~VR~~a~~ 190 (2015)
..++.|...+. +.+++++..++.+|.++-..-..+..=++..++.|..++ ++ .+..|...|..
T Consensus 86 G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~ 165 (457)
T 1xm9_A 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATG 165 (457)
T ss_dssp TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHH
T ss_pred CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHH
Confidence 33567777787 789999999999998876531111100125678888888 22 24556557777
Q ss_pred HHHHHHHHhCCchhhHHHhh--hChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhh-hh--ccccCCCCCCCCCCCCC
Q 000156 191 LTLELCRWIGKDPVKTILFE--KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELG-QE--LISEDVGPGPSEESTAD 265 (2015)
Q Consensus 191 l~~ely~~lG~~~l~~~l~~--~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~-~e--a~~~~~~~~~~~~~~~~ 265 (2015)
++..|... ++ .+..+.+ +.-+..+..|........ ...+.. ........ .. ...+. ..+
T Consensus 166 aL~nLs~~--~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~---~~~~~~-e~a~~~L~nLs~~~~~~~--~~~------- 229 (457)
T 1xm9_A 166 CLRNLSSA--DA-GRQTMRNYSGLIDSLMAYVQNCVAASR---CDDKSV-ENCMCVLHNLSYRLDAEV--PTR------- 229 (457)
T ss_dssp HHHHHTTS--HH-HHHHHTTSTTHHHHHHHHHHHHHHHTC---TTCTTH-HHHHHHHHHHTTTHHHHS--CCH-------
T ss_pred HHHHHccC--HH-HHHHHHHcCCCHHHHHHHHHhhccccC---CchHHH-HHHHHHHHhcccchhccC--cch-------
Confidence 77666643 22 2233321 333333444433221110 000000 00000000 00 00000 000
Q ss_pred CCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHh---cCCCC-CCCChHHHHHHHHHHhc-ccCHH
Q 000156 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA---STKRI-APGDFTEVCRTLKKLIT-DVNIA 340 (2015)
Q Consensus 266 ~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~---~~~ki-~~~~y~~l~~~L~k~l~-D~N~~ 340 (2015)
...+.+ .......... .. ..| .....+. +..+.+ + .+. ..++- ..--...+++.|...+. ..+..
T Consensus 230 -~~~~~~-~~~~~~~~~~-~~-~~~-~~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 230 -YRQLEY-NARNAYTEKS-ST-GCF-SNKSDKM---MNNNYD-C-PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp -HHHHHH-TC------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred -hhhccc-cccccccccc-cc-chh-hccchhh---hhcccc-C-CccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 000000 0000000000 00 011 1110000 000100 0 000 00000 00001356677777777 55678
Q ss_pred HHHHHHHHHHHHHHHhhhc---c-hhhh--HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHH
Q 000156 341 VAVEAIQAIGNLARGLRTH---F-SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVK 409 (2015)
Q Consensus 341 V~~~A~~~l~~La~~L~~~---f-~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l-----~~il~~l~ 409 (2015)
+...|+-+|..|+.+-... . +..+ ...+|.|++.+.+....|+..+..+|..+..+ ... ...++.++
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv 377 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVT 377 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHH
Confidence 8888899999998653321 1 1112 35789999999999999999999999998764 122 23466777
Q ss_pred HHhhcCCh------HHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Q 000156 410 TSVKNKVP------LVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG-TPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 410 ~~L~~Knp------~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~L~Ds-~~~VR~aA~~al~~l~ 473 (2015)
.-|.+.++ .+...++..|..++...+.. ..... ...++.|..++... +.+|+..|...|..++
T Consensus 378 ~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~-~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 77776543 56678888888877554332 11111 24678888999888 8999999888876543
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.088 Score=64.03 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=129.6
Q ss_pred CCCCCCCCcccccccCcchhhhhhhcc--CChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHH
Q 000156 270 IDEYELVDPVDILTPLEKSGFWEGVKA--TKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAI 346 (2015)
Q Consensus 270 iD~~dl~~~vdIl~kl~~~~f~~~l~s--~kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~ 346 (2015)
..||.-.|...|+... .. +.+ .+-+.+++++..+..+. .+..+....-..++..+.+++...|..+....-
T Consensus 16 ~~p~~~~~k~~v~qe~--r~----fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvY 89 (355)
T 3tjz_B 16 SNPFQHLEKSAVLQEA--RV----FNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCY 89 (355)
T ss_dssp ----CCCCHHHHHHHG--GG----TTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHH
T ss_pred cCccccchHHHHHHHH--HH----hcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3456555554454332 12 233 24445567888876655 453332223456777788889988888877776
Q ss_pred HHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHH
Q 000156 347 QAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (2015)
Q Consensus 347 ~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~ 426 (2015)
-.+..+++. ...+-.++..+.+=+.++++.+|-.|..+|..+... .-++.+.+.+..++.|++|-||..++-.
T Consensus 90 Lyl~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVRk~A~l~ 162 (355)
T 3tjz_B 90 LTIKEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVSSSALVS 162 (355)
T ss_dssp HHHHHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 666666654 344668899999999999999998887777776542 4467788888999999999999999988
Q ss_pred HHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000156 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2015)
Q Consensus 427 L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~ 474 (2015)
..+++...+ . .++.++..+..++.|+++.|-..|..++..+.+
T Consensus 163 ~~kL~~~~p-e----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 163 SLHLLKCSF-D----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHTTTCH-H----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCH-H----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 887765432 2 236688899999999999998777776666653
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.08 Score=65.74 Aligned_cols=236 Identities=14% Similarity=0.149 Sum_probs=124.3
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC-----CCCh----hhHHHHHHhcCCCC-----CchhHHHHHHHHH
Q 000156 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-----HLKL----KDLIDFCKDTGLQS-----SAAATRNATIKLL 783 (2015)
Q Consensus 718 Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~-----~l~~----k~li~~l~~~gL~~-----sn~~VR~aA~~ll 783 (2015)
+++.|+.-++ +..|.+|-++...|.+++...|.. ..+- +-+.=+..+- ++| .-+-||+.|.++|
T Consensus 175 fcE~L~~DLF-dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDR-FGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 175 FFEQISDNLL-SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDK-FNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp TTHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBC-CBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhcc-ccccccCeeeeehHHHHHHHH
Confidence 4455555543 789999999999999999988742 1111 1111111111 222 1245777777777
Q ss_pred HHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcC
Q 000156 784 GALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 863 (2015)
Q Consensus 784 ~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~ 863 (2015)
+.+ .++.+.+ + +...++..+.
T Consensus 253 GaL-~hLp~e~------------------------------------------------------~----IL~qLV~~l~ 273 (800)
T 3oc3_A 253 SRI-YPLIGPN------------------------------------------------------D----IIEQLVGFLD 273 (800)
T ss_dssp HHH-TTTSCSC------------------------------------------------------C----HHHHHTTGGG
T ss_pred HHH-HhCChhH------------------------------------------------------H----HHHHHHhhcC
Confidence 776 5554320 0 1112223445
Q ss_pred CCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHH
Q 000156 864 SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (2015)
Q Consensus 864 d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~ 943 (2015)
...|.+|-.||-.|.=+ . ..+. . +..+++++...|.|.+-.|+..|..++.-++ .+ ..+..++..+-.
T Consensus 274 ~~~WEVRHGGLLGLKYL-~---DLL~-~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p---~~l~~LL~iLWd 341 (800)
T 3oc3_A 274 SGDWQVQFSGLIALGYL-K---EFVE-D-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---IT---DSLDLVLEKCWK 341 (800)
T ss_dssp CSCHHHHHHHHHHHHHT-G---GGCC-C-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CS---STHHHHHHHHHH
T ss_pred CCCeeehhhhHHHHHHH-H---HHHH-H-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---ch---hhHHHHHHHHHH
Confidence 66799999988777744 1 1111 1 4566666666667776677766666666555 21 123333444433
Q ss_pred HhCCC--cHHHHHHHHHHHHHHHHhc----CchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHH
Q 000156 944 CLGDN--KKHMRECTLTVLDAWLAAV----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017 (2015)
Q Consensus 944 ~L~D~--k~~Vr~aa~~aL~~i~~~~----gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl 1017 (2015)
+|.+- -..-..+....|..++..- ....++|.+.+.|.+. -+.+|..++..+...+ ...++..+
T Consensus 342 ~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHt--ITSVR~AVL~TL~tfL--------~~~~LRLI 411 (800)
T 3oc3_A 342 NIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSP--VPEVRTSILNMVKNLS--------EESIDFLV 411 (800)
T ss_dssp HHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCS--SHHHHHHHHHHTTTCC--------CHHHHHHH
T ss_pred HhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCC--cHHHHHHHHHHHHHHH--------hhhHHHHH
Confidence 33322 2223333344444444332 1234566666666654 2566666666654433 13344443
Q ss_pred Hh-hcCCCChHHHHHHHHHH
Q 000156 1018 SI-AMTDKSSDVRKAAEACI 1036 (2015)
Q Consensus 1018 ~~-~L~D~~~~VR~aA~~~L 1036 (2015)
++ .|-+++.+||+.+.++.
T Consensus 412 FQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 412 AEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp HHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHH
Confidence 33 45666666666666544
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=95.87 E-value=1.9 Score=57.41 Aligned_cols=89 Identities=22% Similarity=0.218 Sum_probs=61.6
Q ss_pred hhhhcCCChhhhhcCCChHHHHHHHHHHHHHhhccCCCCc-hHHH---hhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHh
Q 000156 8 LKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKD-NRIR---ELGPLFKKTVADSNAPVQDKALDALIAYLKAA 83 (2015)
Q Consensus 8 ~~~~~~lpl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~-~~~~---~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~ 83 (2015)
+.+=.=+|+.++|+|.+.+.|..|...|...+.. +.. ..+. -...++.+.+.|+|..|++.|..+|..+....
T Consensus 31 ~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~---~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 31 LREDKILPVLKDLKSPDAKSRTTAAGAIANIVQD---AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTS---HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcC---cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 4445668999999999999999999999988742 111 1111 12345677899999999999999998887655
Q ss_pred chhhhhh--HHHHHHHHH
Q 000156 84 DADAGRY--AKEVCDAIA 99 (2015)
Q Consensus 84 ~~~~~~~--~~~v~~~Li 99 (2015)
+.++..+ ..+|++.|.
T Consensus 108 g~d~~~~l~~~~il~~L~ 125 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIE 125 (684)
T ss_dssp CHHHHHHHHHTTHHHHHH
T ss_pred CchHHHHHHHcChHHHHH
Confidence 4433322 233555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.78 E-value=0.59 Score=63.17 Aligned_cols=264 Identities=16% Similarity=0.120 Sum_probs=161.1
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChh--HHhhhhhccHHHHHH
Q 000156 731 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD--IKGFLADVKPALLSA 808 (2015)
Q Consensus 731 npKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~--l~~~L~~lkp~ll~~ 808 (2015)
++.+|.+++..|.-+.- |... ..+++.+... +.+.+..+|..|.-.+|-+|.-.|.. +.. ++..
T Consensus 450 ~~~ir~gAaLGLGla~~--GS~~---eev~e~L~~~-L~dd~~~~~~~AalALGli~vGTgn~~ai~~--------LL~~ 515 (963)
T 4ady_A 450 VDVLLHGASLGIGLAAM--GSAN---IEVYEALKEV-LYNDSATSGEAAALGMGLCMLGTGKPEAIHD--------MFTY 515 (963)
T ss_dssp HHHHHHHHHHHHHHHST--TCCC---HHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHTTCCCHHHHHH--------HHHH
T ss_pred cHHHHHHHHHHHHHHhc--CCCC---HHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccCCHHHHHH--------HHHH
Confidence 47788888877766543 4322 3566777776 77777888999999999888655532 121 1111
Q ss_pred HHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhc-CCCChHHHHHHHHHHHHHHHhcccc
Q 000156 809 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL-ESPDWKVRLESIEAVNKILEEANKR 887 (2015)
Q Consensus 809 Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l-~d~~Wk~R~eale~L~~ll~~a~~~ 887 (2015)
+.+ .. .+ .-.|..... . | .=.+.+.+ ..+.+++.+ .+.+|-+|..++-.+.-..
T Consensus 516 ~~e---~~-~e---~vrR~aalg--L-----G-ll~~g~~e----~~~~li~~L~~~~dp~vRygaa~alglAy------ 570 (963)
T 4ady_A 516 SQE---TQ-HG---NITRGLAVG--L-----A-LINYGRQE----LADDLITKMLASDESLLRYGGAFTIALAY------ 570 (963)
T ss_dssp HHH---CS-CH---HHHHHHHHH--H-----H-HHTTTCGG----GGHHHHHHHHHCSCHHHHHHHHHHHHHHT------
T ss_pred Hhc---cC-cH---HHHHHHHHH--H-----H-hhhCCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHh------
Confidence 111 00 00 000100000 0 0 00000001 123454444 4678999998876665221
Q ss_pred CCCCChhhHHHHH-HhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHH
Q 000156 888 IQPAGTGELFGGL-RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLDAWLA 965 (2015)
Q Consensus 888 I~~~~~~eL~~~L-~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L-~D~k~~Vr~aa~~aL~~i~~ 965 (2015)
....+ ...++.| ....+|.+..|++.|+..|+.|+ +|.. ..++.++..| .+.++.||..+.-+|+.+..
T Consensus 571 aGTGn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~--~g~~------e~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 571 AGTGN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVL--LRDY------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp TTSCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--SSSC------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred cCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhc--cCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 22222 3445533 33457888899999888888764 3332 2355666544 46789999999999998887
Q ss_pred hcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC--CCChhhhHHHHHhhcCC--CChHHHHHHHHHHHHHHH
Q 000156 966 AVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTD--KSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 966 ~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~L~D--~~~~VR~aA~~~L~~l~~ 1041 (2015)
..+...+++.|...+.|. +..+|+.++.-|......... .+.+..++.-+.+.+.| .++.+|-.++-+.+-+.
T Consensus 642 Gn~~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~- 718 (963)
T 4ady_A 642 GKGLQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN- 718 (963)
T ss_dssp SSCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT-
T ss_pred CCCcHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh-
Confidence 777788888877777766 589999999999876655443 23567777777787876 45778888887777554
Q ss_pred HcChh
Q 000156 1042 AGGQE 1046 (2015)
Q Consensus 1042 ~~G~~ 1046 (2015)
.|..
T Consensus 719 -aG~~ 722 (963)
T 4ady_A 719 -AGGR 722 (963)
T ss_dssp -TGGG
T ss_pred -cCCC
Confidence 4443
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.68 E-value=4.2 Score=53.90 Aligned_cols=287 Identities=11% Similarity=0.078 Sum_probs=156.5
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHH
Q 000156 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 809 (2015)
Q Consensus 730 KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~L 809 (2015)
++..++.-++-.|+++-..-+.....+..+.+.+.+. |.+.+...|.-|++.|.++ ...+.++..|.+-. ..++.|
T Consensus 306 ~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~-L~~~~~~~~~~AvEgLaYL--Sl~~~VKe~L~~d~-~~L~~L 381 (778)
T 3opb_A 306 NVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINA-ISRRIVPKVEMSVEALAYL--SLKASVKIMIRSNE-SFTEIL 381 (778)
T ss_dssp TSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHH--TTSSHHHHHHHHCH-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH-HhcCCccHHHHHHHHHHHH--hCCHHHHHHHHhCH-HHHHHH
Confidence 4567888788788777654444456677899999887 8887767799999988755 56778887774322 223333
Q ss_pred HHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCC-CcccccccchHHHH------hcCCCChHHHHHHHHH-HHHHH
Q 000156 810 DAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP-REDISGKFTPTLVK------SLESPDWKVRLESIEA-VNKIL 881 (2015)
Q Consensus 810 e~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lp-rvdIs~~L~~~ll~------~l~d~~Wk~R~eale~-L~~ll 881 (2015)
-+-+.. ....+ . .-++.+ -...-........+ ...+ .+|- .+.+ .-.|..+ ...+.+.. -...
T Consensus 382 v~llk~-~~d~s-~-~Ygal~--IL~NLt~~~~~~~~e~~~l-~~Lk-~~A~~~~p~~~~~d~~~-~~~~~v~~~~~~~- 452 (778)
T 3opb_A 382 LTMIKS-QKMTH-C-LYGLLV--IMANLSTLPEEXXXXXXXX-XXXX-XXXXXXXPAADKVGAEK-AAKEDILLFNEKY- 452 (778)
T ss_dssp HHHHTT-TCCTT-H-HHHHHH--HHHHTTCCCCCCCCCCC--------------------CCTHH-HHHHHHHHHHHHH-
T ss_pred HHHHhC-CCCch-H-HHHHHH--HHHHhcCCCcccchhhhhh-hhhh-hhccccCcccCcccccc-cchHHHHHHHHHH-
Confidence 332221 10000 0 000000 00000000000000 0000 0000 0000 0011111 11222211 1111
Q ss_pred HhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHH-hh-hHHHHHHHHHhCCCcHH---HHHHH
Q 000156 882 EEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SS-KGVLSDILKCLGDNKKH---MRECT 956 (2015)
Q Consensus 882 ~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~-~~-~~llp~ll~~L~D~k~~---Vr~aa 956 (2015)
+.. ..+++.|...++..+..++..|+.+|..|+.. +..+. .+ ...++.++..|.+.... +|..|
T Consensus 453 ------l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~A 521 (778)
T 3opb_A 453 ------ILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILG 521 (778)
T ss_dssp ------TTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHH
T ss_pred ------HHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHH
Confidence 221 34788888888888899999999999999744 33332 22 35789999999887654 89899
Q ss_pred HHHHHHHHHhcCc---------hhhHHHHHHHHhc-CCCC----------h-hHHHHHHHHHHHHhccCCCC--CC----
Q 000156 957 LTVLDAWLAAVHL---------DKMVPYVTTALTD-AKLG----------A-EGRKDLFDWLSKQLTGLSGF--PD---- 1009 (2015)
Q Consensus 957 ~~aL~~i~~~~gl---------~~ll~~l~~~L~~-~k~~----------p-~~R~~~l~~L~~~l~~~~~~--~~---- 1009 (2015)
..+|..+...... -..++.+...|.. +... + ..+.+++.-|... ...+.. .+
T Consensus 522 A~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNL-As~~~n~~E~~r~~ 600 (778)
T 3opb_A 522 CRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNL-ASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHH-HHCCSHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHH-hcCCcccchHHHHH
Confidence 9999988865431 1455677777762 2100 0 2266777776643 333311 11
Q ss_pred h-h--hhHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000156 1010 A-A--HLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 1010 ~-~--~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~ 1041 (2015)
+ . ..++.|...|.+.+..||.+|.+++..++.
T Consensus 601 Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 1 2 134457788888899999999999999886
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.2 Score=63.50 Aligned_cols=262 Identities=11% Similarity=0.061 Sum_probs=153.3
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC--C--hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhH
Q 000156 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL--K--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794 (2015)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l--~--~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l 794 (2015)
++.++..+ .+.++.++..++..|..+.. +.... . -...++.+..+ |.+.++.++..|..+|..|... .+..
T Consensus 4 l~~lv~~L-~s~~~~~q~~A~~~L~~l~~--~~~~~~~~i~~~g~i~~Lv~l-L~s~~~~~~~~A~~aL~nLa~~-~~~~ 78 (457)
T 1xm9_A 4 IPKAVQYL-SSQDEKYQAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDL-LRSPNQNVQQAAAGALRNLVFR-STTN 78 (457)
T ss_dssp HHHHHHHH-HSSCTHHHHHHHHHHHHHTS--SCSSHHHHHHHTTHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSS-CHHH
T ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHHHc--CChHHHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhcC-CHHH
Confidence 34555554 56678888888888887652 21111 0 12356677777 8999999999999998887642 1222
Q ss_pred HhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcC-CCChHHHHHH
Q 000156 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE-SPDWKVRLES 873 (2015)
Q Consensus 795 ~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~-d~~Wk~R~ea 873 (2015)
+..+ -+ . + ..+.|++.+. +.+...|..|
T Consensus 79 k~~i-----------~~----~---G---------------------------------~i~~Lv~lL~~~~~~~~~~~a 107 (457)
T 1xm9_A 79 KLET-----------RR----Q---N---------------------------------GIREAVSLLRRTGNAEIQKQL 107 (457)
T ss_dssp HHHH-----------HH----T---T---------------------------------CHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHH-----------HH----c---C---------------------------------CHHHHHHHHhhCCCHHHHHHH
Confidence 2111 00 0 0 1245667777 6678888899
Q ss_pred HHHHHHHHHhccccCCCCChhhHHHHHHhccc--------c--------chHHHHHHHHHHHHHHHHHhChhhHHhhh--
Q 000156 874 IEAVNKILEEANKRIQPAGTGELFGGLRGRLY--------D--------SNKNLVMATLITLGAVASAMGPAVEKSSK-- 935 (2015)
Q Consensus 874 le~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~--------D--------sN~~V~~~Al~~l~~La~alg~~f~~~~~-- 935 (2015)
+..|..+... ...........++.|...|. + ....+...|+.++..|+.. +...+.+.
T Consensus 108 ~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~ 183 (457)
T 1xm9_A 108 TGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNY 183 (457)
T ss_dssp HHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTS
T ss_pred HHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHc
Confidence 8888888742 11111111245666777772 2 2355677899999999864 44444333
Q ss_pred -HHHHHHHHHhCC------CcHHHHHHHHHHHHHHHHh----------------------------c-------------
Q 000156 936 -GVLSDILKCLGD------NKKHMRECTLTVLDAWLAA----------------------------V------------- 967 (2015)
Q Consensus 936 -~llp~ll~~L~D------~k~~Vr~aa~~aL~~i~~~----------------------------~------------- 967 (2015)
..+|.++..|.+ ....+.+.+..+|..+... +
T Consensus 184 ~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (457)
T 1xm9_A 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYD 263 (457)
T ss_dssp TTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--------------------------
T ss_pred CCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhcccc
Confidence 678888887763 2222444444444433200 0
Q ss_pred -----------Cc-----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC-CCh-------hhhHHHHHhhcCC
Q 000156 968 -----------HL-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA-------AHLLKPASIAMTD 1023 (2015)
Q Consensus 968 -----------gl-----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~-~~~-------~~ll~pl~~~L~D 1023 (2015)
|. ..+++.+...|.+.+ ++.++..++..|...-...... ... ...+++|+..|.+
T Consensus 264 ~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~ 342 (457)
T 1xm9_A 264 CPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK-KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342 (457)
T ss_dssp --CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC
T ss_pred CCccccccCchHHHHHhCcchHHHHHHHHhhcC-CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhC
Confidence 11 123556667776543 4666665555554322211110 011 2345679999999
Q ss_pred CChHHHHHHHHHHHHHHH
Q 000156 1024 KSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 1024 ~~~~VR~aA~~~L~~l~~ 1041 (2015)
.+.+||+.|..+|..+..
T Consensus 343 ~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 343 GNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp SCHHHHHHHHHHHHHHHT
T ss_pred CCHhHHHHHHHHHHHHhc
Confidence 999999999999988754
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.011 Score=61.30 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=61.4
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~ 935 (2015)
+.|+..+.|.+|.+|..|+..|..+- ..+.+..|...|.|.+..|+..|+..++.+. -.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~-----------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~ 103 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GE 103 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cH
Confidence 56777778888888888877775431 1345677777777888888888888877653 13
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000156 936 GVLSDILKCLGDNKKHMRECTLTVLD 961 (2015)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~aa~~aL~ 961 (2015)
..++.++..+.|....||.+|..+|.
T Consensus 104 ~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 104 RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45677778888888888888877764
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.19 Score=61.39 Aligned_cols=189 Identities=10% Similarity=0.012 Sum_probs=128.8
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CC--hHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GD--FTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~--y~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (2015)
.+...+.+.+-..+..|...|..|+....-.. .. -...++.|.+.+ ...+..+...|+.+|..|+..-...-...
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~ 210 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 210 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHH
Confidence 46666777888889999999998875311000 00 012355566654 35567788899999999987332211122
Q ss_pred -hHhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCC----h--HhHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000156 364 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLN----L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 430 (2015)
Q Consensus 364 -~~~llp~LL~klkdkk~----~V~~aa~~aL~al~~~--~~~~----l--~~il~~l~~~L~~Knp~vR~~~l~~L~~~ 430 (2015)
....+|.|.+.+...+. .+++.+..+|..+..+ ++.. + ...++.+...|.+.+..++.+++..|..+
T Consensus 211 ~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290 (354)
T ss_dssp HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35789999999987654 4888888888888752 0111 0 13578888899999999999999999886
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
.... ........ .-.+|.|+.+|.+.++.+|+.|..+|..+...-++
T Consensus 291 a~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 291 SARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred hCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 4322 22222222 34689999999999999999999999988866443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.56 E-value=1.8 Score=58.54 Aligned_cols=159 Identities=14% Similarity=0.163 Sum_probs=98.6
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHH
Q 000156 296 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (2015)
Q Consensus 296 s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (2015)
.++|. |..|+-.|.-|-. ++..+.+..|.+.+. ..+..+...|+-.||.+..|-+.. .+..|.
T Consensus 370 ~~~~~-k~sA~aSLGlIh~------g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-------~~~lL~ 435 (963)
T 4ady_A 370 AQNWA-KFTATASLGVIHK------GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-------TTDYLK 435 (963)
T ss_dssp CCTHH-HHHHHHHHHHHTS------SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-------HHHHHH
T ss_pred cchHH-HHHHHHHhhhhcc------CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-------HHHHHH
Confidence 46675 3455555544422 223345666777775 456788999999999998877642 334444
Q ss_pred HHhccCc--------HHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000156 373 EKLKEKK--------PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (2015)
Q Consensus 373 ~klkdkk--------~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (2015)
+.+.+.+ ..++.++.-+|.-++.- +.-+++++.|...+.+.++.++..+...|+.++-....... +.
T Consensus 436 ~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G--S~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---i~ 510 (963)
T 4ady_A 436 NIIVENSGTSGDEDVDVLLHGASLGIGLAAMG--SANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---IH 510 (963)
T ss_dssp HHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---HH
T ss_pred HHHcCccccccccccHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---HH
Confidence 4444433 56777776666655432 33467888888888877777887777777766544332211 23
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 445 ~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
.++.. +++|.+..||..+.-+|+.++ +|.
T Consensus 511 ~LL~~---~~e~~~e~vrR~aalgLGll~--~g~ 539 (963)
T 4ady_A 511 DMFTY---SQETQHGNITRGLAVGLALIN--YGR 539 (963)
T ss_dssp HHHHH---HHHCSCHHHHHHHHHHHHHHT--TTC
T ss_pred HHHHH---HhccCcHHHHHHHHHHHHhhh--CCC
Confidence 33333 345777889988888887663 453
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.25 Score=51.94 Aligned_cols=100 Identities=17% Similarity=0.292 Sum_probs=77.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~--~~llp 939 (2015)
+.+.+|. ..-.|..++.. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 18 l~~~dw~----~ileicD~I~~-----~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 18 NTAEDWG----LILDICDKVGQ-----SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSSCCHH----HHHHHHHHHTT-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHC-----CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 4566895 34445555531 2233478999999999999999999999999999999999998543 56777
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000156 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLD 970 (2015)
Q Consensus 940 ~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2015)
.+.+.+....+.|++-+...+..|....+-+
T Consensus 89 el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 89 EVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 6766666677889999999999999887533
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=94.51 E-value=2.4 Score=58.57 Aligned_cols=401 Identities=10% Similarity=0.018 Sum_probs=209.4
Q ss_pred hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchh-hh--hhHHHHHHHHHHhhcC-C-ChhHHHHHHHHHHHHHhhhhh--
Q 000156 54 GPLFKKTVADSNAPVQDKALDALIAYLKAADAD-AG--RYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWVELEAV-- 126 (2015)
Q Consensus 54 ~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~-~~--~~~~~v~~~LieK~l~-~-k~~~k~~a~~~ll~~~E~~~~-- 126 (2015)
.+.+..++.|+.-.-|-.|.|.+..++...... +. ...-.++..++.++|. + .+.+...=..|+-.....-+|
T Consensus 510 ~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR 589 (997)
T 1vsy_5 510 FELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRR 589 (997)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhh
Confidence 456677889999999999999998888665331 21 2345677778888886 3 555544322222222222223
Q ss_pred -hhHHHHHHH--H---hhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhC
Q 000156 127 -DVFLDVMEK--A---IKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (2015)
Q Consensus 127 -~~v~~~L~~--~---~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (2015)
..+++.|.. . ......=..+..+..|..++.+.|-+.-..++++..+. +.|+-++||++.-.++..++...-
T Consensus 590 ~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~ 667 (997)
T 1vsy_5 590 SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQS 667 (997)
T ss_dssp CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhc
Confidence 456665522 1 12223334556788899999999987555788887777 999999999999999998887662
Q ss_pred Cch---hhHHHh---h----------hChHHHHHHHHHHHHhcC---C---CCCCCccchhhhhH--hhhhhccccCCCC
Q 000156 201 KDP---VKTILF---E----------KMRDTMKKELEVELVNVS---G---TARPTRKIRAEQDK--ELGQELISEDVGP 256 (2015)
Q Consensus 201 ~~~---l~~~l~---~----------~Lk~~q~keLe~~f~k~~---~---~~~P~R~~rs~~~~--~~~~ea~~~~~~~ 256 (2015)
... ++..+- . ...+....-+.+.|++++ + ...|.-..++.... +....=-....+.
T Consensus 668 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~ 747 (997)
T 1vsy_5 668 NPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARG 747 (997)
T ss_dssp CCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSG
T ss_pred ccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcC
Confidence 100 110000 0 000111111222222221 0 00010000000000 0000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHH-HHHHHHHhcCCCCCCCChHHHHHHHHHHhc
Q 000156 257 GPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDA-VAELTKLASTKRIAPGDFTEVCRTLKKLIT 335 (2015)
Q Consensus 257 ~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~ea-L~~L~~l~~~~ki~~~~y~~l~~~L~k~l~ 335 (2015)
+. ...+-|| .... ++ | .+....+.++=.+-... ...+...++.--+.+.....++.+|.....
T Consensus 748 ~~--------~~~l~~~--~~~~-ll---P--~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~ 811 (997)
T 1vsy_5 748 PN--------KVLLVPY--LVDY-VL---P--FLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNV 811 (997)
T ss_dssp GG--------HHHHHHH--HTTT-TT---T--TTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTT
T ss_pred CC--------ccchhhh--hHHH-HH---H--HHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 00 0000000 0000 11 1 11111122211110000 011112222111222334456666666565
Q ss_pred -ccCHHHHHHHHHHHHHHHHHhhhcc--h-hhhHhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCC-ChHhHHHHHH
Q 000156 336 -DVNIAVAVEAIQAIGNLARGLRTHF--S-GSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCL-NLVDVVEDVK 409 (2015)
Q Consensus 336 -D~N~~V~~~A~~~l~~La~~L~~~f--~-~~~~~llp~LL~klkdkk-~~V~~aa~~aL~al~~~~~~-~l~~il~~l~ 409 (2015)
+.+= .+..++..+..+.- ++-| . .....+...++..+.|+. ..||+.|..+|..++. |. ....+. .++
T Consensus 812 ~s~sW-~R~~~L~~lq~~~f--~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~--c~~~~~~~~-~li 885 (997)
T 1vsy_5 812 ALSSN-QTKLQLAFIQHFLS--AELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVH--NWKEEQPLL-SLI 885 (997)
T ss_dssp TSCSS-SHHHHHHHHHHHHH--HHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHH--SCCSHHHHH-HHH
T ss_pred cCCcH-HHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--cCCchhhHH-HHH
Confidence 4454 66666666655543 2222 1 234577888888999999 9999999999999986 55 433333 333
Q ss_pred HHhhcCC----------------hHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000156 410 TSVKNKV----------------PLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2015)
Q Consensus 410 ~~L~~Kn----------------p~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l 472 (2015)
..+..+- -..|-++..-|..++...|-.. ..+.++.++..|...++|+.+ |+..+.++++.|
T Consensus 886 ~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseF 964 (997)
T 1vsy_5 886 ERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEF 964 (997)
T ss_dssp HHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHH
T ss_pred HHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHH
Confidence 3333221 1355666777777777665432 245567777788888899665 999999999999
Q ss_pred HHHhCch
Q 000156 473 AKSVGMR 479 (2015)
Q Consensus 473 ~~~~Ge~ 479 (2015)
.+.--+.
T Consensus 965 krTH~D~ 971 (997)
T 1vsy_5 965 KKVRADT 971 (997)
T ss_dssp HHHTSTT
T ss_pred Hhccchh
Confidence 9876653
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=94.43 E-value=0.38 Score=51.89 Aligned_cols=99 Identities=13% Similarity=0.292 Sum_probs=76.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~--~~llp 939 (2015)
+.+.||.. .-.|.+++.. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 28 ~~~~Dw~~----~leicD~I~~-----~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~ 98 (163)
T 1x5b_A 28 NTTEDWSL----IMDICDKVGS-----TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFAT 98 (163)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 34568954 4456666652 1223478999999999999999999999999999999999998432 45776
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000156 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHL 969 (2015)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl 969 (2015)
.+.+.+.. ..+.|++.+...+..|....+-
T Consensus 99 el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 99 EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 66666654 4578999999999999998763
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=94.20 E-value=3.5 Score=57.30 Aligned_cols=321 Identities=13% Similarity=0.161 Sum_probs=168.2
Q ss_pred hhHHHHHHHHHHHhhhChh---HHHHHHHHHhh---hCC---ChhHHHHH-HHHHHHHHHHhCCCCC-ChhhHHHHHHhc
Q 000156 698 TRAHAMKCLTTFSEAVGPG---FIFERLYKIMK---DHK---NPKVLSEG-ILWMVSAVEDFGVSHL-KLKDLIDFCKDT 766 (2015)
Q Consensus 698 ~r~~a~~~L~~l~e~~~~~---~Vl~~L~~~l~---~~K---npKv~~~~-l~~L~~li~~fG~~~l-~~k~li~~l~~~ 766 (2015)
..+++.=++.+++....++ .++..+++.+. +++ ..|.+..+ +.|+..-..+|-...- -++.++..+-..
T Consensus 495 ~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~ 574 (1073)
T 3gjx_A 495 NLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEF 574 (1073)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHH
Confidence 4555555666666655532 45666666553 333 34543333 3333222222211111 146677777775
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhh-cc---HHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCC
Q 000156 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLAD-VK---PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (2015)
Q Consensus 767 gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~-lk---p~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~ 842 (2015)
+.++++.|.++|..++..+..-.+..+-....+ .. ..++..+..-+.+...+
T Consensus 575 -m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~----------------------- 630 (1073)
T 3gjx_A 575 -MHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQ----------------------- 630 (1073)
T ss_dssp -TTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHH-----------------------
T ss_pred -HhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHH-----------------------
Confidence 899999999999999998877666544221111 11 12233333333332110
Q ss_pred CCCCCcccccccchHHHHhc----CCC-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHH---Hhccccch-HHHHH
Q 000156 843 DGLPREDISGKFTPTLVKSL----ESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL---RGRLYDSN-KNLVM 913 (2015)
Q Consensus 843 d~lprvdIs~~L~~~ll~~l----~d~-~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L---~~rL~DsN-~~V~~ 913 (2015)
.+ ..|++.+ +.- +-..|.+.++.+-...... +..++..- ...+.|.. .....
T Consensus 631 ------~~-----~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~--------w~~l~~~~~~~~~~~~d~~~i~~l~ 691 (1073)
T 3gjx_A 631 ------QV-----HTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQV--------WDSIIQQATKNVDILKDPETVKQLG 691 (1073)
T ss_dssp ------HH-----HHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHH--------HHHHHHHHHHCGGGGGCHHHHHHHH
T ss_pred ------HH-----HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH--------HHHHHHHhhcCchhccChHHHHHHH
Confidence 00 0111110 010 1112233333222222110 11111111 11233432 23345
Q ss_pred HHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCC----------------Cc-H------HHHHHHHHHHHHHHHhcC--
Q 000156 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD----------------NK-K------HMRECTLTVLDAWLAAVH-- 968 (2015)
Q Consensus 914 ~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D----------------~k-~------~Vr~aa~~aL~~i~~~~g-- 968 (2015)
..+++...+|.++|..|.+++..+.+.+++.++- .+ + .||.+....+.+++....
T Consensus 692 ~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~ 771 (1073)
T 3gjx_A 692 SILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDP 771 (1073)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 5667888899999999999999999988876541 12 1 245555556666665442
Q ss_pred ---chhhHHHHHHHH-hc--CCCChhHH-HHHHHHHHHHhccCCC--CCChhhhHHHHHhh----cC---CCChHHHHHH
Q 000156 969 ---LDKMVPYVTTAL-TD--AKLGAEGR-KDLFDWLSKQLTGLSG--FPDAAHLLKPASIA----MT---DKSSDVRKAA 1032 (2015)
Q Consensus 969 ---l~~ll~~l~~~L-~~--~k~~p~~R-~~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~----L~---D~~~~VR~aA 1032 (2015)
...++|.+.+.+ .+ .+ .|..| .++|..++..+.+++. .+.+..++..++.| ++ +..+|.|..-
T Consensus 772 ~~v~~~~i~pl~~~vl~dY~~~-~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~f 850 (1073)
T 3gjx_A 772 QMVAENFVPPLLDAVLIDYQRN-VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNF 850 (1073)
T ss_dssp HHHHHHTSHHHHHHTHHHHHHS-CGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHH
Confidence 234445444332 21 11 35566 6677777766666554 23455555554443 43 6789999999
Q ss_pred HHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHH
Q 000156 1033 EACIVEILRAGGQETIEKNLKDIQGPALALILERI 1067 (2015)
Q Consensus 1033 ~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l 1067 (2015)
.+.+.++..+.-. .+-.|++...+.+.+.+
T Consensus 851 f~ll~~~~~~~f~-----~l~~l~~~~~~~~i~~i 880 (1073)
T 3gjx_A 851 FLLLQAVNSHCFP-----AFLAIPPAQFKLVLDSI 880 (1073)
T ss_dssp HHHHHHHHHHCGG-----GTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH-----HHHcCCHHHHHHHHHHH
Confidence 9999998887432 34457777767666654
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=94.20 E-value=1.5 Score=56.64 Aligned_cols=309 Identities=15% Similarity=0.181 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHHhhhcchh---hhHHHHHHHHHHHhhhChhHH---HHHHHHHhhh-CCChhHHHHHHHHHHHHHHHhCC
Q 000156 679 KKCVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGV 751 (2015)
Q Consensus 679 ~~~~~~il~~LveKlgD~K---~r~~a~~~L~~l~e~~~~~~V---l~~L~~~l~~-~KnpKv~~~~l~~L~~li~~fG~ 751 (2015)
++.+...++.|++++.+.. =|..|...|..++..+..... +..++..+.. ..+..+...+|+.|..++..-+.
T Consensus 16 ~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp --CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred CCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 3567788899999988754 377788888888776653322 4445555433 35677777788887776642111
Q ss_pred C-----------CC---------ChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHH
Q 000156 752 S-----------HL---------KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDA 811 (2015)
Q Consensus 752 ~-----------~l---------~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ 811 (2015)
. .+ .-..-+..+..+ |+..+-.||-.++++|..|...-+...+..+ -.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l-L~~~df~vR~~alqlL~~L~~~r~~~~Q~~I-----------l~ 163 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL-LEEFDFHVRWPGVKLLTSLLKQLGPQVQQII-----------LV 163 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-----------HH
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHH-hcCccHHHHHHHHHHHHHHHhcCcHHHHHHH-----------Hh
Confidence 0 00 002345666777 8999999999999999999866554333322 11
Q ss_pred HHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC
Q 000156 812 EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891 (2015)
Q Consensus 812 ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~ 891 (2015)
.+. =.+.|+..+.|..-.+|.||+-.|..+... |..|+.-
T Consensus 164 ----~p~-----------------------------------gi~~Lv~lL~d~rE~iRneallLL~~Lt~~-n~~iQkl 203 (651)
T 3grl_A 164 ----SPM-----------------------------------GVSRLMDLLADSREVIRNDGVLLLQALTRS-NGAIQKI 203 (651)
T ss_dssp ----STT-----------------------------------HHHHHHGGGGCSSHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred ----Ccc-----------------------------------cHHHHHHHHhCchHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 000 024678888999999999999999998863 3444421
Q ss_pred -ChhhHHHHHHhccccc----hHHHHHHHHHHHHHHHHHhChhhHHhhh--HHHHHHHHHhCCCcH-------HHHH--H
Q 000156 892 -GTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKK-------HMRE--C 955 (2015)
Q Consensus 892 -~~~eL~~~L~~rL~Ds----N~~V~~~Al~~l~~La~alg~~f~~~~~--~llp~ll~~L~D~k~-------~Vr~--a 955 (2015)
-|...+..|...+..- ...|+.-++.++..|... .+.-..|.+ .++|.+...|..... .++. .
T Consensus 204 VAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~-N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~ 282 (651)
T 3grl_A 204 VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN-NNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHL 282 (651)
T ss_dssp HHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHH
Confidence 1233444454444332 337788888888887754 211111111 144444444432211 1111 2
Q ss_pred HHHHHHHHHHhcCc-------------hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC------------CCh
Q 000156 956 TLTVLDAWLAAVHL-------------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF------------PDA 1010 (2015)
Q Consensus 956 a~~aL~~i~~~~gl-------------~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~------------~~~ 1010 (2015)
+..++..++...+. ..+++.+...+-..+....+|.+++..++..+...+.. +..
T Consensus 283 ~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~ 362 (651)
T 3grl_A 283 MLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPR 362 (651)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCE
T ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCc
Confidence 33333333322110 12345556666555455678999999888877644321 011
Q ss_pred hhhHHHHHhhcCCC-ChHHHHHHHHHHHHHH
Q 000156 1011 AHLLKPASIAMTDK-SSDVRKAAEACIVEIL 1040 (2015)
Q Consensus 1011 ~~ll~pl~~~L~D~-~~~VR~aA~~~L~~l~ 1040 (2015)
..++..+...+.+. .-++|-+|..|+..+.
T Consensus 363 p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 363 PAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp EHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 12222344445554 4689999999998765
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.022 Score=65.88 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=69.7
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000156 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (2015)
Q Consensus 860 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp 939 (2015)
..+.|.+|.+|..+...+ . .+ .|...++|.+..|+..++.. ++. +
T Consensus 129 ~L~~D~d~~VR~~aA~~l-----------~----~~---~l~~l~~D~d~~VR~~aa~~-------l~~----------~ 173 (244)
T 1lrv_A 129 QMAADRDYLVRAYVVQRI-----------P----PG---RLFRFMRDEDRQVRKLVAKR-------LPE----------E 173 (244)
T ss_dssp GGTTCSSHHHHHHHHHHS-----------C----GG---GGGGTTTCSCHHHHHHHHHH-------SCG----------G
T ss_pred HHHcCCCHHHHHHHHHhc-----------C----HH---HHHHHHcCCCHHHHHHHHHc-------CCH----------H
Confidence 345778888888876521 1 11 23455678888888776653 221 2
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHh
Q 000156 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI 1019 (2015)
Q Consensus 940 ~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~ 1019 (2015)
.+...++|....||.++...+ +. +.+...+.++ ++.+|..+...+. .+.+.
T Consensus 174 ll~~ll~D~d~~VR~aaa~~l-------~~----~~L~~Ll~D~--d~~VR~~aa~~l~----------------~~~L~ 224 (244)
T 1lrv_A 174 SLGLMTQDPEPEVRRIVASRL-------RG----DDLLELLHDP--DWTVRLAAVEHAS----------------LEALR 224 (244)
T ss_dssp GGGGSTTCSSHHHHHHHHHHC-------CG----GGGGGGGGCS--SHHHHHHHHHHSC----------------HHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC-------CH----HHHHHHHcCC--CHHHHHHHHHcCC----------------HHHHH
Confidence 233566888888888877652 22 2344446665 4788888776632 13333
Q ss_pred hcCCCChHHHHHHHHHH
Q 000156 1020 AMTDKSSDVRKAAEACI 1036 (2015)
Q Consensus 1020 ~L~D~~~~VR~aA~~~L 1036 (2015)
.|.|.++.||.+|...|
T Consensus 225 ~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 225 ELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp HCCCCCHHHHHHHHCCC
T ss_pred HccCCCHHHHHHHHHHh
Confidence 34888888888887654
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.5 Score=59.71 Aligned_cols=187 Identities=10% Similarity=0.017 Sum_probs=127.6
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CC--hHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GD--FTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~--y~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (2015)
.+...+.+.+=..+..|...|..|+....-.. .. -...++.|.+.+ ...+..+...|+.+|..|+.+-...-...
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 46666777777888889998988864310000 00 012355666654 45577889999999999998432211122
Q ss_pred -hHhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCC----h--HhHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000156 364 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLN----L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 430 (2015)
Q Consensus 364 -~~~llp~LL~klkdkk~----~V~~aa~~aL~al~~~--~~~~----l--~~il~~l~~~L~~Knp~vR~~~l~~L~~~ 430 (2015)
....+|.|.+.+...+. .+++.+..+|..+..+ ++.. + ...++.+...|.+.+..++.+++..|..+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24689999999987654 4888888889888752 1111 1 13467888889999999999999999887
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000156 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (2015)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~ 476 (2015)
.... ........ .-.+|.|+.+|...++.+|+.|..+|..+...-
T Consensus 407 a~~~-~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 407 SARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSSC-HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HcCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 5332 22222222 346899999999999999999999999887653
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.55 Score=49.77 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=81.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+.+.||. +.-.|.+++.. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 24 l~~~dw~----~ileicD~I~~-----~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 24 NKELDWA----SINGFCEQLNE-----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CSSCCHH----HHHHHHHHGGG-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHC-----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 3556895 44445555532 223347899999999999999999999999999999999999653 466888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 000156 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (2015)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L 980 (2015)
.+.+.+.+ ....|++-+...+..|....+-+.-+......|
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~Y~~L 141 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQML 141 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 88888875 457899999999999999875333233333333
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.66 E-value=6.9 Score=45.21 Aligned_cols=127 Identities=12% Similarity=0.158 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc
Q 000156 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (2015)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (2015)
.+|.+.|.+++.++-+. .+.-|.++++.+.....|.+..|+...+..|++.+.. + ..++..+++.|...+.|..
T Consensus 30 ~~kl~~L~qa~el~~~~--dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k-~~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS--CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV---K-VELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcc--CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 68999999999976322 2346788888888877799999999988888887732 2 3578899999999999999
Q ss_pred HHHHHHHHHHHHHHHHh------cCCC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000156 380 PTVAESLTQTLQAMHKA------GCLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (2015)
Q Consensus 380 ~~V~~aa~~aL~al~~~------~~~~-----------l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~ 432 (2015)
+.|...+..|...++.. .+.+ +..+-..|+.-+++.|..+|..+++|+.+++.
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 99999888888887765 1111 12233456666788999999999999999885
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=93.60 E-value=0.52 Score=57.60 Aligned_cols=172 Identities=11% Similarity=0.062 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCC--CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh--HhHHHHHHHHh
Q 000156 301 ERKDAVAELTKLASTKR-IAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEKL 375 (2015)
Q Consensus 301 eR~eaL~~L~~l~~~~k-i~~--~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~kl 375 (2015)
.|++|...|..|+.+.. ... ..++.+++.|...+...+..+...|+.+|..|+.+-.......+ ...+|.|++.+
T Consensus 100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL 179 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHH
Confidence 47788888888874321 100 01345678888888888889999999999999864111111111 25689999874
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC----h---HhHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000156 376 -KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 441 (2015)
Q Consensus 376 -kdkk~~V~~aa~~aL~al~~~~~~~----l---~~il~~l~~~L~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 441 (2015)
+.....+++.+..+|..+..+ +.. + ...++.|...|.+.+. .++..++..|..+-.. ........
T Consensus 180 ~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 258 (354)
T 3nmw_A 180 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258 (354)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 556778888888888888653 111 1 2456777788876554 4888877776654331 12222111
Q ss_pred hh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 442 ~l-~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
.. .-.+|.|+..|.+.+.+|++.|..+|+.+.
T Consensus 259 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 22 237899999999999999999999988775
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.67 Score=49.11 Aligned_cols=111 Identities=14% Similarity=0.236 Sum_probs=83.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+.+.||. ..-.|..++... +..-.+.+.+|++||+..|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 14 l~~~dw~----~~leicD~I~~~-----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (148)
T 1mhq_A 14 MSEQDWS----AIQNFCEQVNTD-----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (148)
T ss_dssp CSSCCHH----HHHHHHHHHHHS-----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 4457895 344566666531 22237889999999999999999999999999999999999754 367888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000156 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (2015)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~ 981 (2015)
.+.+.+.+ ....|++-+...+..|....+-+.-+..+...|.
T Consensus 85 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (148)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 88887765 3678999999999999998754333344444444
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.63 Score=50.53 Aligned_cols=110 Identities=14% Similarity=0.218 Sum_probs=82.8
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHHH
Q 000156 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSD 940 (2015)
Q Consensus 863 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp~ 940 (2015)
.+.||. ..-.|..++... +..-.+.+.+|+++|+..|.+|+..||.++..+++.+|..|... .+.|+..
T Consensus 27 ~~~Dw~----~ileicD~I~~~-----~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~e 97 (171)
T 1juq_A 27 RQEDWE----YIIGFCDQINKE-----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE 97 (171)
T ss_dssp SSCCHH----HHHHHHHHHHHS-----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred CCcCHH----HHHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 456895 444566666531 22347899999999999999999999999999999999999853 3557888
Q ss_pred HHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000156 941 ILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (2015)
Q Consensus 941 ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~ 981 (2015)
|++.+.. ....|++.+...+..|....+-+.-+..+...|+
T Consensus 98 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 98 LIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 8887763 3578999999999999998864443444444444
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.57 Score=59.20 Aligned_cols=172 Identities=11% Similarity=0.069 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh--HhHHHHHHHHh
Q 000156 301 ERKDAVAELTKLASTKRIAPG---DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEKL 375 (2015)
Q Consensus 301 eR~eaL~~L~~l~~~~ki~~~---~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~kl 375 (2015)
.+++|...|..|+.+..-... .++..++.|...+...+..+...|+.+|..|+.+-.......+ ...+|.|++.+
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lL 295 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHH
Confidence 467888888888743211110 1345678888888888888999999999999753111111111 25789999975
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC----h---HhHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000156 376 -KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 441 (2015)
Q Consensus 376 -kdkk~~V~~aa~~aL~al~~~~~~~----l---~~il~~l~~~L~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 441 (2015)
......+++.+..+|..+..+ +.. + ...++.|...|.+... .++..++..|..+-.. ........
T Consensus 296 l~s~~~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 296 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 556778888888899888764 211 1 2456777777876543 4888887777664431 12222211
Q ss_pred hh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 442 ~l-~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
.. .-.+|.|+.+|.+.+.+|++.|..+|+.+.
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 11 346899999999999999999999998775
|
| >1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=91.78 E-value=1.2 Score=47.55 Aligned_cols=99 Identities=17% Similarity=0.340 Sum_probs=74.6
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 863 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
.+.||.. .-.|.++++. .+..-.+.+.+|++||+ ..|..++..||.++..+++.+|+.|... .+.|+.
T Consensus 30 ~~~Dw~~----~leicD~I~~-----~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~ 100 (157)
T 1elk_A 30 QSEDWAL----NMEICDIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVE 100 (157)
T ss_dssp SSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCcCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHH
Confidence 4568854 4445556642 12234789999999997 6899999999999999999999999863 345777
Q ss_pred H-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000156 940 D-ILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (2015)
Q Consensus 940 ~-ll~~L~D---~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2015)
. +++.+.. ....|++.+...+..|....+-+
T Consensus 101 e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~ 135 (157)
T 1elk_A 101 SVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSS 135 (157)
T ss_dssp HHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 6 5666643 34579999999999999987533
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=91.67 E-value=1.2 Score=50.45 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=61.8
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh-ccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHH
Q 000156 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2015)
Q Consensus 860 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~-rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ll 938 (2015)
....+....+|.-|+..|..+ .. ..+++..++. .-.|.+..|+..+...++.++...+++ ..+
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~---------~~-~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------~~l 141 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL---------SK-DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------KAL 141 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT---------TT-SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------TTH
T ss_pred HHHhCcchHHHHHHHHHHHhc---------cC-cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------HHH
Confidence 334556678888887744432 12 2677777777 447888888888888888777655544 256
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHH
Q 000156 939 SDILKCLGDNKKHMRECTLTVLDAWLA 965 (2015)
Q Consensus 939 p~ll~~L~D~k~~Vr~aa~~aL~~i~~ 965 (2015)
+.+..-+.|.+..||.+|.+.+.-|..
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~rpW~~ 168 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLRIWTN 168 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTCSGGG
T ss_pred HHHHHHhcCCCHHHHHHHHHhhHHHhc
Confidence 677778888888888888777655543
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=0.57 Score=49.64 Aligned_cols=77 Identities=12% Similarity=0.162 Sum_probs=64.7
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHhhhhhhhcC------CChhHHHHHHHHHHHH
Q 000156 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLEL 195 (2015)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~~------~d~~VR~~a~~l~~el 195 (2015)
.+..++..|.+.+.|+||+++.-+|..|-.++++=|... |.-+.|+..|.+++.. .+..||+....++.+-
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999988632 4457899999999964 6899999999998887
Q ss_pred HHHhCC
Q 000156 196 CRWIGK 201 (2015)
Q Consensus 196 y~~lG~ 201 (2015)
+...+.
T Consensus 125 ~~~f~~ 130 (149)
T 3g2s_A 125 TVGLPE 130 (149)
T ss_dssp HHHCTT
T ss_pred HHHhCC
Confidence 776654
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=10 Score=46.31 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc
Q 000156 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (2015)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (2015)
.+|.+.|.+++.|+-+. .+.-|.++++.+.....|.+..|+...+..|++.+.. + ..++..+++.|...+.|..
T Consensus 40 ~~Kl~~L~q~~EL~l~~--dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK--DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRDEN 113 (386)
T ss_dssp THHHHHHHHHHHHHHTT--CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 58999999999965211 2234667777777777799999999999999888752 2 2457888899999999999
Q ss_pred HHHHHHHHHHHHHHHHh------cCCC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000156 380 PTVAESLTQTLQAMHKA------GCLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (2015)
Q Consensus 380 ~~V~~aa~~aL~al~~~------~~~~-----------l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~ 432 (2015)
+.|...+..|...++.. .+.. +..+-..|+..+++.|..+|..|++|+.+++.
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 99988888888777743 0111 12344566677788999999999999999885
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=89.84 E-value=2.1 Score=48.40 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=107.5
Q ss_pred hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHhcCchh
Q 000156 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK-CLGDNKKHMRECTLTVLDAWLAAVHLDK 971 (2015)
Q Consensus 893 ~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~-~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ 971 (2015)
..+++........|..-.|+..|+.+++.+ . ....+++.+.. .-.|..=-||+.+..++..++...+++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~ 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH
Confidence 356666666666777778999999977765 1 23567777776 5567777899999999999998888888
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHH
Q 000156 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (2015)
Q Consensus 972 ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~ 1050 (2015)
.++.+..-+.++ |+.+|..++..+.. +............+.| |-....|++.-||++..-.|..+.+.-+ +.+..
T Consensus 140 ~l~~~~~W~~d~--n~~VRR~Ase~~rp-W~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P-d~V~~ 215 (240)
T 3l9t_A 140 ALPIIDEWLKSS--NLHTRRAATEGLRI-WTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP-DLVKI 215 (240)
T ss_dssp THHHHHHHHHCS--SHHHHHHHHHHTCS-GGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHhhHH-HhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH-HHHHH
Confidence 888888888887 68999988887653 2222222233444555 5556799999999999999988766644 45566
Q ss_pred Hhcc
Q 000156 1051 NLKD 1054 (2015)
Q Consensus 1051 ~l~~ 1054 (2015)
++..
T Consensus 216 ~~~~ 219 (240)
T 3l9t_A 216 ELKN 219 (240)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6654
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=89.77 E-value=19 Score=41.61 Aligned_cols=152 Identities=11% Similarity=0.062 Sum_probs=105.8
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
+++.......-.+|.+.|.++++++-.. .|..|.++++.+.....|.+..|+......|.+.+.. =..++..
T Consensus 19 ~lln~A~~~~~~~kl~~L~qa~el~~~~----dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~----k~~l~~~ 90 (257)
T 3gs3_A 19 DWCNELVIASPSTKCELLAKVQETVLGS----CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----KVELLPH 90 (257)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTTT----TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHH
T ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHcc----CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 4555544422269999999999987532 3556788888888877899999999999988887733 1357778
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-cCCCChhHHHHHHHHHHHHhccCCCCCChhhhHH
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~-~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2015)
.++.+...|.|..+.|...++.|...++.. +...+. ++. .+..-..+|.|+... + .
T Consensus 91 ~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~---------~l~~i~~~~~-~~~~~~~~W~~m~~l----------K---~ 147 (257)
T 3gs3_A 91 VINVVSMLLRDNSAQVIKRVIQACGSIYKN---------GLQYLCSLME-PGDSAEQAWNILSLI----------K---A 147 (257)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---------HHHHHTTSSS-CCHHHHHHHHHHHHH----------H---H
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---------HHHHHhcCCC-CcchHHHHHHHHHHH----------H---H
Confidence 889999999999999999998888777543 333332 332 122336677777642 1 1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHH
Q 000156 1016 PASIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 1016 pl~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
-++..+...+..||-.+.+.+..+
T Consensus 148 ~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 148 QILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCcchHHHHHHHHHHH
Confidence 244456678889998888766554
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=89.24 E-value=2.8 Score=47.60 Aligned_cols=98 Identities=18% Similarity=0.360 Sum_probs=71.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+.+.||. .+-.|-+++.. .+..-.+.+.+|+++|+..|.+++..||.++..+++..|..|... .+.|+.
T Consensus 21 ~~~~dw~----~ileicD~I~~-----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 21 LLETDWE----SILQICDLIRQ-----GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp CSSCCHH----HHHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 3456885 44456666642 122247899999999999999999999999999999999988743 344555
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000156 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~g 968 (2015)
.|.+.++. ....|++-+...+..|.....
T Consensus 92 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 92 ELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 55444433 446788888888888887764
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=89.17 E-value=0.42 Score=55.13 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=46.4
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000156 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (2015)
Q Consensus 860 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp 939 (2015)
..+.|.+|.+|.+++..+ . . ..|...+.|.++.|+..+...+ | +
T Consensus 177 ~ll~D~d~~VR~aaa~~l-----------~----~---~~L~~Ll~D~d~~VR~~aa~~l-------~-----------~ 220 (244)
T 1lrv_A 177 LMTQDPEPEVRRIVASRL-----------R----G---DDLLELLHDPDWTVRLAAVEHA-------S-----------L 220 (244)
T ss_dssp GSTTCSSHHHHHHHHHHC-----------C----G---GGGGGGGGCSSHHHHHHHHHHS-------C-----------H
T ss_pred HHHcCCCHHHHHHHHHhC-----------C----H---HHHHHHHcCCCHHHHHHHHHcC-------C-----------H
Confidence 456889999999987652 1 1 2355668999999998777653 3 1
Q ss_pred HHHHHhCCCcHHHHHHHHHHH
Q 000156 940 DILKCLGDNKKHMRECTLTVL 960 (2015)
Q Consensus 940 ~ll~~L~D~k~~Vr~aa~~aL 960 (2015)
..+..|.|....||.++...|
T Consensus 221 ~~L~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 221 EALRELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHCCCCCHHHHHHHHCCC
T ss_pred HHHHHccCCCHHHHHHHHHHh
Confidence 344556999999999987654
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=88.74 E-value=12 Score=45.74 Aligned_cols=141 Identities=8% Similarity=0.092 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCC
Q 000156 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947 (2015)
Q Consensus 868 k~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D 947 (2015)
.+|.+.|..+++++-.. .|+.+.++++.+...-.|.+..|+.....+|++.+.. + ..++..+++.+...|.|
T Consensus 40 ~~Kl~~L~q~~EL~l~~----dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d 111 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK----DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRD 111 (386)
T ss_dssp THHHHHHHHHHHHHHTT----CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcC
Confidence 47999999999987532 4556788999999988999999999999999888753 2 34567788888889999
Q ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-cCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCh
Q 000156 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSS 1026 (2015)
Q Consensus 948 ~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~-~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~ 1026 (2015)
..+.|...++.|...++. .+...+. ++. ....-..+|.|+... +. -|+..+...+.
T Consensus 112 ~d~~V~K~~I~~~tslYp---------l~f~~i~~~~~-~~~~~e~~W~~m~~l----------K~---~Il~~~ds~n~ 168 (386)
T 3o2t_A 112 ENVNVVKKAILTMTQLYK---------VALQWMVKSRV-ISELQEACWDMVSAM----------AG---DIILLLDSDND 168 (386)
T ss_dssp SSHHHHHHHHHHHHHHHH---------HHHHHHHHC-C-CCHHHHHHHHHHHHH----------HH---HHHHGGGCSSH
T ss_pred CCHHHHHHHHHHHHHHHH---------HHHHHHhcCCC-cchhHHHHHHHHHHH----------HH---HHHHHhccCCc
Confidence 999999998888877653 3333332 321 123346778777642 11 24445677888
Q ss_pred HHHHHHHHHHHHH
Q 000156 1027 DVRKAAEACIVEI 1039 (2015)
Q Consensus 1027 ~VR~aA~~~L~~l 1039 (2015)
.||-.+.+.+..+
T Consensus 169 GVrl~aiKFle~V 181 (386)
T 3o2t_A 169 GIRTHAIKFVEGL 181 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 9998888776554
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=88.12 E-value=0.84 Score=49.58 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=63.7
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC---CcChhHHHhhhhhhhc------CCChhHHHHHHHHHHHH
Q 000156 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFD------HQDQNVRASSKGLTLEL 195 (2015)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~---~i~~k~il~~l~~ll~------~~d~~VR~~a~~l~~el 195 (2015)
++..++..|.+.+.|+||+++.-+|..|-.++++=|.. .|.=+.|+..|.+++. ..+..||+.+..++.+-
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 46678888999999999999999999999999986652 2344789999999986 35789999999998887
Q ss_pred HHHhCC
Q 000156 196 CRWIGK 201 (2015)
Q Consensus 196 y~~lG~ 201 (2015)
+...+.
T Consensus 127 ~~~f~~ 132 (171)
T 1juq_A 127 TMALPE 132 (171)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 777654
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=86.74 E-value=1.9 Score=45.61 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=63.4
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHhhhhhhhcC------CChhHHHHHHHHHHHH
Q 000156 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLEL 195 (2015)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~~------~d~~VR~~a~~l~~el 195 (2015)
++..++..|.+.+.|+||+++.-||..|-.++++=|... |.=+.|+..|.+++.. .+..||+....++.+-
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 467788888999999999999999999999999988632 3447899999999874 5889999998888777
Q ss_pred HHHhCC
Q 000156 196 CRWIGK 201 (2015)
Q Consensus 196 y~~lG~ 201 (2015)
+...+.
T Consensus 115 ~~~f~~ 120 (148)
T 1mhq_A 115 TVWFPE 120 (148)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 666543
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=86.65 E-value=4.5 Score=43.48 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=60.7
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHh
Q 000156 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND-GTPEVRDAAFSVLAAIAKSV 476 (2015)
Q Consensus 399 ~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~L~D-s~~~VR~aA~~al~~l~~~~ 476 (2015)
.+..+.+..|..-++++||.+...+|..|..|+.+|+...-... -+.++..+++.+.. .++.||+...+.+......+
T Consensus 48 ~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 48 NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 34455666666778899999999999999999999986532111 14555666666654 77899999999999888888
Q ss_pred Cch
Q 000156 477 GMR 479 (2015)
Q Consensus 477 Ge~ 479 (2015)
+..
T Consensus 128 ~~~ 130 (163)
T 1x5b_A 128 QKD 130 (163)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 | Back alignment and structure |
|---|
Probab=86.03 E-value=2.8 Score=47.47 Aligned_cols=98 Identities=16% Similarity=0.324 Sum_probs=72.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+.+.||.. +-.|-+++.. .+..-.+.+.+|+++|+..|.+++..||.++..+++..|..|... .+.|+.
T Consensus 18 ~~~~dw~~----~leicd~i~~-----~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~ 88 (220)
T 1dvp_A 18 RLEPDWPS----ILLICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (220)
T ss_dssp CSSCCHHH----HHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCcCHHH----HHHHHHhhcC-----CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHH
Confidence 34568964 3345555542 122347899999999999999999999999999999999998643 233555
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000156 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~g 968 (2015)
.+...+++ ....|++.+.+.+..|.....
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 89 MFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 55555543 456789999899999987764
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=85.61 E-value=5 Score=41.96 Aligned_cols=96 Identities=15% Similarity=0.222 Sum_probs=72.0
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh--HhHHHHH
Q 000156 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVL 371 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~L 371 (2015)
+.+.+|.- +.++..+++.. +..-.+.+++|+++|+..|+.+...|+.+++.+.+..|..|...+ +.++..|
T Consensus 18 l~~~dw~~----ileicD~I~~~---~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el 90 (140)
T 3ldz_A 18 NTAEDWGL----ILDICDKVGQS---RTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEV 90 (140)
T ss_dssp SSSCCHHH----HHHHHHHHTTS---TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHCC---CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH
Confidence 56788854 44455555421 223468899999999999999999999999999999999987543 5666666
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHh
Q 000156 372 LEKLKEKKPTVAESLTQTLQAMHKA 396 (2015)
Q Consensus 372 L~klkdkk~~V~~aa~~aL~al~~~ 396 (2015)
...++...+.|++-+.+.+..|...
T Consensus 91 ~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 91 SNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHH
Confidence 6666556778888888888888754
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.24 E-value=7.4 Score=44.36 Aligned_cols=145 Identities=10% Similarity=-0.006 Sum_probs=94.8
Q ss_pred HHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhcch-hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC---CC
Q 000156 327 CRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC---LN 400 (2015)
Q Consensus 327 ~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~---~~ 400 (2015)
++.|.+.+. |....+...|+.+|..|+.+-...-. -.-...+|.|+..|+.....+++.+..||..+...+. ..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555666 44337888888899988865322111 1123568999999999999999999999999975200 00
Q ss_pred h--HhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHHHHh-------cC---------CCHH
Q 000156 401 L--VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICMECL-------ND---------GTPE 460 (2015)
Q Consensus 401 l--~~il~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~k~L-------~D---------s~~~ 460 (2015)
+ ..-+|.|+..|. +.++.+++.+...|..+-.... +..+ .+.-+|.|+..+ .| .+++
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i---~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM---ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHH---HHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHH---HhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 1 124677888887 5789999998877766532211 2222 234566666543 12 3679
Q ss_pred HHHHHHHHHHHHHH
Q 000156 461 VRDAAFSVLAAIAK 474 (2015)
Q Consensus 461 VR~aA~~al~~l~~ 474 (2015)
|+..|..||..+..
T Consensus 167 v~~na~~~L~nLss 180 (233)
T 3tt9_A 167 IFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987754
|
| >3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.23 E-value=3.5 Score=43.76 Aligned_cols=99 Identities=16% Similarity=0.338 Sum_probs=73.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHHHHhChhhHHhh--hHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~D-sN~~V~~~Al~~l~~La~alg~~f~~~~--~~ll 938 (2015)
+.+.+|. .+-.|..++.. . +..-.+.+.+|++||.. .|.+++..||.++..+++.+|..|...+ +.|+
T Consensus 29 l~~~Dw~----~ileicD~In~--~---~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl 99 (152)
T 3rru_A 29 VQTEDWG----QFMHICDIINT--T---QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFV 99 (152)
T ss_dssp CCSCCHH----HHHHHHHHHHH--S---TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCccHH----HHHHHHHHHhC--C---CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhH
Confidence 3456895 45556666653 1 22247899999999985 5899999999999999999999997643 4566
Q ss_pred HH-HHHHhCCC---cHHHHHHHHHHHHHHHHhcCc
Q 000156 939 SD-ILKCLGDN---KKHMRECTLTVLDAWLAAVHL 969 (2015)
Q Consensus 939 p~-ll~~L~D~---k~~Vr~aa~~aL~~i~~~~gl 969 (2015)
.. +.+.+.++ ...|++.+...+..|....+-
T Consensus 100 ~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 100 KENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp TTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 54 55555543 346999999999999987753
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.80 E-value=6.2 Score=45.02 Aligned_cols=110 Identities=11% Similarity=0.049 Sum_probs=78.1
Q ss_pred hHhHHHHHHHHhccCcH--HHHHHHHHHHHHHHHhcC-----CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000156 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGC-----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (2015)
Q Consensus 364 ~~~llp~LL~klkdkk~--~V~~aa~~aL~al~~~~~-----~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~ 436 (2015)
+...+|.+.+.+..... .++..+..++..+...+. +--...+|.+...|++.++.++..++..|..+....+.
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 34568888888877666 777667678877764410 00113468889999999999999999998876443221
Q ss_pred --hHHHHhhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Q 000156 437 --AAVLKVHKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 437 --~~l~~~l~~l~p~l~k~L~-Ds~~~VR~aA~~al~~l~~~ 475 (2015)
..+.. .--+|.|+++|. ..+.++|+.|..+||.+..+
T Consensus 86 nk~~I~~--~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 86 NKLEVAE--LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHH--cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 11211 236889999997 47899999999999988643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2015 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-15 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 6e-14 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-09 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-07 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 1e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 8e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.001 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 4e-05 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 3e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 0.001 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.6 bits (197), Expect = 2e-15
Identities = 153/1079 (14%), Positives = 314/1079 (29%), Gaps = 102/1079 (9%)
Query: 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 381
+V + + KL+ D N V A++ +G L ++ + ++ L + K
Sbjct: 42 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQ 98
Query: 382 VAESLTQTLQAM------HKAGCLNLVDVVEDV-----KTSVKNKVPLVRSLTLNWVTFC 430
+ + + L+ + +G +V + + K + V+ L+ +
Sbjct: 99 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 158
Query: 431 IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ ++ H + + L VR L + S G IE L
Sbjct: 159 LSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLS 217
Query: 491 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550
S + S G + + F +
Sbjct: 218 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 277
Query: 551 APASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVG 608
+ + V P + K T +D + E +++ D
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 609 QLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
WK R A L V + L + + + + E+NV+ +V
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKA-----DVF 392
Query: 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
+ + + LC E+ T + I + L+K MK
Sbjct: 393 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ--SQVPN---------IVKALHKQMK 441
Query: 728 DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGL--QSSAAATRNATIKLLGA 785
+ K+ K + V + + ++ L +SS++ + + L
Sbjct: 442 E-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 500
Query: 786 LHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 501 ILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 560
Query: 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
+ +K L++ D E E + + + +L L+ L
Sbjct: 561 YIK-----DLFTCTIKRLKAADI--DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL 613
Query: 905 -YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLDA 962
N+ + T+ L +A + + G IL N++ ++ TL+ LD
Sbjct: 614 ERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDI 673
Query: 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT 1022
+ + D + +L L D S +T
Sbjct: 674 LIKNYSDSLT------------------AAMIDAVLDELPPLISESDMHVSQMAISF-LT 714
Query: 1023 DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSK 1082
+ + IL L+ A+ + + + G + + +
Sbjct: 715 TLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR 774
Query: 1083 SSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDR 1142
+ S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 775 MLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTDS 830
Query: 1143 ERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR 1202
R+ + + E+ + + + +L +L E ++
Sbjct: 831 IRL---------LALLSLGEVGHHIDLSGQLELKSVIL-----------EAFSSPSEEVK 870
Query: 1203 KDIIEVLDILLRW-------FVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAA 1255
L + FVLQ S +L L E+ + G +
Sbjct: 871 SAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG---LKPYVE 927
Query: 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLV 1315
L++ E R + E ++ T LP + L S ++ R V V
Sbjct: 928 NIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAV 986
Query: 1316 GFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
F I H I LK+ + D +R+ AL T + I + +
Sbjct: 987 KFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.2 bits (183), Expect = 6e-14
Identities = 135/1055 (12%), Positives = 295/1055 (27%), Gaps = 111/1055 (10%)
Query: 18 DRLLHKNWKVRNEANIDL-AALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
+++ + R A DL L D+ R++ + K + D N VQ+ A+ L
Sbjct: 10 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 69
Query: 77 IA-YLKAADADAGRYAKEVCDA----------IAAKCLTGRPKTVEKAQAVFMLWVELEA 125
K + +C I++ L + A + L +
Sbjct: 70 GPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-- 127
Query: 126 VDVFLDVMEKAIKNKVAKAV-VPAIDVMFQALSEFGAKIIPP-KRILKMLPELFDHQDQN 183
+ AI + +V + A+D+M LS G ++ IL L
Sbjct: 128 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLA 187
Query: 184 VRASSKGLTLELCRWIGKDPVKTILFEKMRD-TMKKELEVELVNVSGTARPTRKIRAEQD 242
VR + L G ++ + + + + + A +R+
Sbjct: 188 VRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG 247
Query: 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSER 302
+ L + + ++ + + E + + P + +K +
Sbjct: 248 EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 307
Query: 303 KDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362
+ E + D + D++ V A + + +
Sbjct: 308 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 367
Query: 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL----------------------- 399
+ + P L+ + KE++ V + ++ K
Sbjct: 368 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 427
Query: 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459
+ ++V+ + +K K R N +T + A+ + VP + LND +
Sbjct: 428 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSS 486
Query: 460 --EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517
++ A S L I + + ++ L + + + A + V+
Sbjct: 487 SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE-ALLVTQQLVK 545
Query: 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKL 577
+ +++ + + K+ G S L
Sbjct: 546 VIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 605
Query: 578 T----------EAPEDVEPSEMSLEEIESRLGSLIPADTVGQL--------KSAVWKERL 619
+ + +L I + +G+ + +L
Sbjct: 606 PNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKL 665
Query: 620 EAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679
+S+L ++ + + I L + P SE ++ V Q I + LA
Sbjct: 666 GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 725
Query: 680 KCVVLCLLGISERVADIKTRAHAMKCLTTF--------SEAVGPGFIFERLYKIMKDHKN 731
K L + V + A+ + F + +G + L +
Sbjct: 726 KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 785
Query: 732 PKVLSEGILWMVSAVEDFG--VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
+ + V + F +D S + R + LG +
Sbjct: 786 ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHH 845
Query: 790 VGPDIKGFLADVKPALLSALDAEYEK------------NPFEGTVVPKKTVRASESTSSV 837
+ ++K +L A + E+ + ++ S
Sbjct: 846 IDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKR 902
Query: 838 SSGGSDGLPR----------EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
L + L+K E + R E + K+ +
Sbjct: 903 QYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET 962
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
+ P L+G L + + + + S ++ K + D LK L D
Sbjct: 963 LLPR--------LKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1014
Query: 948 NKKHMRECTLTVLDA------WLAAVHLDKMVPYV 976
++R L ++ L LD ++P++
Sbjct: 1015 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 2e-11
Identities = 107/978 (10%), Positives = 275/978 (28%), Gaps = 80/978 (8%)
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917
L++ + S D R + + L++ + ++ ++ + L D N + +
Sbjct: 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67
Query: 918 TLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL------------DAWLA 965
LG + S + E + ++ + + +K+ +R+ + L + LA
Sbjct: 68 CLGPLVSKVK---EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 966 AVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTD 1023
A K+ +T+A+ + + + D ++ L+ G +L +T
Sbjct: 125 ANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083
VRK + ++ + G ++ +L + N + + +
Sbjct: 184 PRLAVRKRTIIALGHLVMSCGNIVFVDLIEH--------LLSELSKNDSMSTTRT-YIQC 234
Query: 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1143
+ + + A + + ++ + I V +V D ++ + E
Sbjct: 235 IAAISRQAGHRIGEYLEKIIPLVV---------KFCNVDDDELREYCIQAF--------E 277
Query: 1144 RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRK 1203
V R K P + I + + Y + + DG + +
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 1204 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVE 1263
D ++ + R +T + EF + L E+ A +
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 397
Query: 1264 KSGHNIEKVREKMRELTKQIVNFYSA------TKTLPYILEGLRSKNNRTRIECVDLVGF 1317
+ + + + ++ K+ +TR C +++
Sbjct: 398 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTE 457
Query: 1318 LI---DHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
L+ + L I + ++ AL+ L ++ +
Sbjct: 458 LVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL 517
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
+K+ + + L + + + + +
Sbjct: 518 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAAD 577
Query: 1435 MRRNYGHSELHVERS---------------IMPRALASVSGPTDWNEAL----DIISFGS 1475
+ + + + L + + I
Sbjct: 578 IDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPL 637
Query: 1476 PEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRS 1535
+ LA + ++ + D L+ ++ + ++
Sbjct: 638 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL 697
Query: 1536 CKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLML 1595
+ Q + A + S I+ +L L V L A+
Sbjct: 698 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQ 757
Query: 1596 KILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQS 1655
++ ++ L+ +L S+ + +S+ + + + L C + V+
Sbjct: 758 ALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ 817
Query: 1656 TIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLR--MVKTVLHELVKLRGAAIKGH 1713
I DV R SI + E + L+ +++ +++ AA
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 877
Query: 1714 LSMVPIDMKPQ-PIILAYIDLNLETLAAARM-----LTSTGPGGQTHWGDSAANNPTSAT 1767
S+ ++ P +L I + ++S G + ++
Sbjct: 878 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 937
Query: 1768 NSADAQLKQELAAIFKKI 1785
A+ + +A K+
Sbjct: 938 ECAEEGTRNVVAECLGKL 955
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.3 bits (160), Expect = 3e-11
Identities = 117/1057 (11%), Positives = 273/1057 (25%), Gaps = 126/1057 (11%)
Query: 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRI-------RELGPLFKKTVADSNAPVQD 70
+L ++R+ ++I L + + + G L + VQ
Sbjct: 90 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQL 149
Query: 71 KALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFL 130
+ALD + L + + + + + R ++ V VF+
Sbjct: 150 EALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV 209
Query: 131 DVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP-----KRILKMLPELFDHQDQNVR 185
D++E + + Q ++ + ++I+ ++ + + D +R
Sbjct: 210 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 269
Query: 186 ASSKGLTLELCR-------------------------WIGKDPVKTILFEKMRDTMKKEL 220
R D D +
Sbjct: 270 EYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD 329
Query: 221 EVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 280
+ S + K+R K L + + ++ + + +
Sbjct: 330 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSP----ALISRFKEREE 385
Query: 281 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF-TEVCRTLKKLITDVNI 339
+ + +K T+ + + + T + + L K + + ++
Sbjct: 386 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 445
Query: 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQAMHKAG 397
+ L L + L+P ++ L +K + + L +
Sbjct: 446 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 505
Query: 398 CLNLVDVVED-----VKTSVKNKVPLVRS---LTLNWVTFCIETSSKAAVLKVHKDYVPI 449
+ V V + + S L + I + + +
Sbjct: 506 SPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDL 565
Query: 450 CMECLN-----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI---- 500
+ D EV++ A S + I ++ L + + +L I
Sbjct: 566 FTCTIKRLKAADIDQEVKERAISCMGQIICNL-GDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 501 -AGSGGDVATGTSSARVQTSGGSVPSV----EASESSFVRKSAASMLSGKRPVSAAPASK 555
+ +A ++ G + ++ S L + +
Sbjct: 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 684
Query: 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEP-SEMSLEEIESRLGSLIPADTVGQLKSAV 614
+ + A + +++ + GS++ +
Sbjct: 685 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744
Query: 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML---PGWSEKNVQVQQQVIEVINYLA 671
L A+ Q + + L+R++ + + Q + + + L
Sbjct: 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804
Query: 672 ATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK--DH 729
K V + + + R A+ L + E I++
Sbjct: 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 864
Query: 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
+ +V S +A G + + S L +
Sbjct: 865 PSEEVKS-------AASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSA 917
Query: 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR-- 847
+K ++ ++ LL + E + ++ L +
Sbjct: 918 SVVGLKPYVENIWALLLKHCECAEE---------------------GTRNVVAECLGKLT 956
Query: 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS 907
P L L S R + AV + + + I P G L D
Sbjct: 957 LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDP 1015
Query: 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR-------------- 953
+ N+ L+T + A + VL + K+ +R
Sbjct: 1016 DLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDG 1075
Query: 954 --------ECTLTVLDAWLAAVHLDKMVPYVTTALTD 982
EC T+LD+ L + + + + +V L D
Sbjct: 1076 LDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD 1112
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.3 bits (147), Expect = 1e-09
Identities = 122/1002 (12%), Positives = 283/1002 (28%), Gaps = 99/1002 (9%)
Query: 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472
+ R + N + ++ S + V + ++ L D EV++ A L +
Sbjct: 13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPL 72
Query: 473 AKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532
V +E ++ L + M+ S+
Sbjct: 73 VSKVKEYQVETIVDTL-------CTNML----------------------------SDKE 97
Query: 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGK-QETSKLTEAPEDVEPSEMSL 591
+R ++ L K + P + G + + K +G+ E + +
Sbjct: 98 QLRDISSIGL--KTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 155
Query: 592 EEIESRLGSLIPAD-------TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644
++ SR G L+ + QL S R I +L V + N V+++
Sbjct: 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-IVFVDLIEH 214
Query: 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHA 702
L+ L ++ + I+ I ++ A + + + + + + R +
Sbjct: 215 LLSELS--KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYC 272
Query: 703 MKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL 756
++ +F I K + N E
Sbjct: 273 IQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDE-----DEDENAMDADGGDD 327
Query: 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816
D + + + R A K L A+ + F V PAL+S E
Sbjct: 328 DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 387
Query: 817 PFEGTV-------VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV 869
+ + ++ G + + L K ++ K
Sbjct: 388 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT 447
Query: 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGP 928
R + +++ + + G + S+ NL + L L + P
Sbjct: 448 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP 507
Query: 929 -AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------------HLDKMVP 974
+ ++ ++ C+GD + L V + + ++ +
Sbjct: 508 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFT 567
Query: 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEA 1034
L A + E ++ + + + L + K+ R
Sbjct: 568 CTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVK 627
Query: 1035 CIVEILRAGGQETIEKNLKDIQ---GPALALILERIKLNGASQVSMGPTSKSSSKVPKSA 1091
+ I + + + L + L +KL S + + + S S
Sbjct: 628 ALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI 687
Query: 1092 SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 1151
+ + S + ++ A + + + + R + +
Sbjct: 688 DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGG 747
Query: 1152 FEDPRIEQIQEL-----ENDMMKYFREDLHRRLLSTD-FKKQVDGLEMLQKALPSIRKDI 1205
++ Q L N L + S + K + ++ +
Sbjct: 748 ALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC 807
Query: 1206 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1265
+ ++ F+ S +T +++L L +L + G+ + S ++E
Sbjct: 808 PKEGPAVVGQFIQDVKNSRSTDSIRLLALL-----SLGEVGHHIDLSGQLELKSVILEAF 862
Query: 1266 GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE 1325
E+V+ I + + LP++L+ + S+ R + L +
Sbjct: 863 SSPSEEVKSAASYALGSISV-GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG 921
Query: 1326 ISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
+ +++ ++ + R L I E +
Sbjct: 922 LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL 963
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 2e-06
Identities = 59/519 (11%), Positives = 146/519 (28%), Gaps = 63/519 (12%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVA---------DSN 65
P + +K+ +EA + L I + P K D +
Sbjct: 520 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 579
Query: 66 APVQDKALDALIAYLKAADADAGRYAKEVC--------DAIAAKCLTGRPKTVEKAQAVF 117
V+++A+ + + + G + I + +
Sbjct: 580 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI 639
Query: 118 MLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177
L L L + + + + A+D++ + S+ + + ++ P L
Sbjct: 640 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPP-LI 698
Query: 178 DHQDQNVRASSKGLTLELCRWIGK----------DPVKTILFEKMRDTMKKELEVELVNV 227
D +V + L + + + ++ + ++
Sbjct: 699 SESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQA 758
Query: 228 SGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEK 287
+ + L + S+ ++S + + P + + +
Sbjct: 759 LVVTGTNNLGYMDLLRMLTGPVYSQSTAL-THKQSYYSIAKCVAALTRACPKEGPAVVGQ 817
Query: 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347
+ S R A+ L ++ I E+ + + + + V A
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVG--HHIDLSGQLELKSVILEAFSSPSEEVKSAASY 875
Query: 348 AIGNLARGLRTHF----------SGSSRFLL-----PVLLEKLKEKKPTVAESLTQTLQA 392
A+G+++ G + ++LL ++ E++ L
Sbjct: 876 ALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK 935
Query: 393 MHK----------AGCL------NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436
+ A CL + ++ +K + + RS + V F I +
Sbjct: 936 HCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQ 995
Query: 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
+ K+ + ++ L D VR A + A +
Sbjct: 996 PIDPLL-KNCIGDFLKTLEDPDLNVRRVALVTFNSAAHN 1033
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 2e-07
Identities = 73/598 (12%), Positives = 165/598 (27%), Gaps = 40/598 (6%)
Query: 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 827
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERT--RSELLPFLTDTIYDEDE------------- 63
Query: 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V + + + G P + P L + VR +++E++ I E +
Sbjct: 64 VLLALAEQLGTFTTLVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS-- 119
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
P+ F L RL + + G + + D
Sbjct: 120 --PSDLEAHFVPLVKRLAGGDW--FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007
+ +R + L + + LD + + ++ + L +
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 1008 PD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065
+ A ++ A DKS VR E+ +A G E + +L +
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 1066 RIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
++ + +V + S+ + + +S K A IM +
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 1126 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQEL--ENDMMKYFREDLHRRLLSTD 1183
+ + ++ + ++ + E+ + + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 1184 FKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243
++ ++ +E + + + + L L +L +
Sbjct: 416 WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA--WLVDHVYAIREAATSNLKKLVEKFG 473
Query: 1244 DEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS----ATKTLPYILEG 1299
E A +P ++ SG R + LP +L
Sbjct: 474 KEWAH------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRM 527
Query: 1300 LRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLAT 1357
R + + Q + I+ LT ++D +++ A L
Sbjct: 528 AGDPVANVRFNVAKSLQKIGPILDNSTL-QSEVKPILEKLTQDQDVDVKYFAQEALTV 584
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 1e-06
Identities = 56/467 (11%), Positives = 138/467 (29%), Gaps = 15/467 (3%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKAL 73
+P RL +W + L ++C EL F+ +D V+ A
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KAELRQYFRNLCSDDTPMVRRAAA 185
Query: 74 DAL--IAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLD 131
L A + D + + + + R VE + L + + + +
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRA---SS 188
+ +A ++K + D + G +I + + D + + A
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 189 KGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQE 248
K L ++ + + + +++ + + ++ I + +
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 249 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
+ E ++ +D V + L+ E + KW R +
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368
+ LA + D ++ + D A+ A + L ++ ++
Sbjct: 426 MPLLAGQLGVEFFDE-KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATII 482
Query: 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNW 426
P +L + + + + + ++ ++ V + V VR
Sbjct: 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKS 542
Query: 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473
+ + + + PI + D +V+ A L ++
Sbjct: 543 LQKIGPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 8e-06
Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 11/195 (5%)
Query: 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN 908
+S P +V+ E W+VRL IE + + + L D
Sbjct: 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL---VDHV 454
Query: 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968
+ A L + G E + ++ +L GD R TL ++
Sbjct: 455 YAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512
Query: 969 LD----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024
D M+P V D A R ++ L K L + + D+
Sbjct: 513 QDITTKHMLPTVLRMAGDPV--ANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQ 570
Query: 1025 SSDVRKAAEACIVEI 1039
DV+ A+ + +
Sbjct: 571 DVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 0.001
Identities = 81/612 (13%), Positives = 171/612 (27%), Gaps = 44/612 (7%)
Query: 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNI 339
D L P+ + ++ R +++ +L+ +A + +E+ L I D
Sbjct: 7 DSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIALALGVER-TRSELLPFLTDTIYD-ED 62
Query: 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399
V + + +G + LLP L ++ V + ++L+A+ +
Sbjct: 63 EVLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI--SHEH 118
Query: 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459
+ D+ VK + V + +D TP
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTP 178
Query: 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519
VR A A +G ++ + S + + V A V +
Sbjct: 179 MVR-------RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231
Query: 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSA---APASKKGGPVKPSAKKDGSGKQETSK 576
+ + AA S + +K + + Q K
Sbjct: 232 QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291
Query: 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW-----KERLEAISSLRQQVEA 631
EA S E E+ + Q+ + + + +
Sbjct: 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351
Query: 632 VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISE 691
L + I L L ++ +V+ +I ++ + +L +
Sbjct: 352 SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA 411
Query: 692 RVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS--EGILWMVSAVEDF 749
A + R ++ + + +G F E+L + V + E + + +
Sbjct: 412 EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471
Query: 750 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 809
+I R T+ + L + G DI + P +L
Sbjct: 472 FGKEWAHATIIPKVLA-MSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMA 528
Query: 810 -DAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWK 868
D V ++ + + L + + P L K + D
Sbjct: 529 GDPVAN--------VRFNVAKSLQKIGPI-------LDNSTLQSEVKPILEKLTQDQDVD 573
Query: 869 VRLESIEAVNKI 880
V+ + EA+ +
Sbjct: 574 VKYFAQEALTVL 585
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 4e-05
Identities = 51/336 (15%), Positives = 116/336 (34%), Gaps = 29/336 (8%)
Query: 614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ----QQVIEVINY 669
+ + LEAI + Q ++ Q D+S EIL ++ + E + V+ ++ + +
Sbjct: 145 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEF 203
Query: 670 LAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDH 729
A K ++ ++ ++ + + D + R A++ L Y+ M+ +
Sbjct: 204 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI---------MSLYYQYMETY 254
Query: 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
P I + V+ ++ + C + + A+ + KF
Sbjct: 255 MGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 312
Query: 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRED 849
+L + L+ D + + + + + +D
Sbjct: 313 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT-----------CCEDD 361
Query: 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909
I P + + +++PDW+ R ++ A ILE + L + D +
Sbjct: 362 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 421
Query: 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945
+ T+G + + A L+ +L+CL
Sbjct: 422 VVRDTAAWTVGRICELLPEAAINDV--YLAPLLQCL 455
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 3e-04
Identities = 70/725 (9%), Positives = 202/725 (27%), Gaps = 57/725 (7%)
Query: 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
I + P++ + +++A+ D + H +L+ D +
Sbjct: 95 QIKTNALTALVS-IEPRIAN-AAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVK 152
Query: 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836
A++ LG + + P + ++ +L A+ + V + A + +
Sbjct: 153 RASLLALGYMCESADPQSQALVSSSNN-ILIAIVQGAQSTETSKAVR----LAALNALAD 207
Query: 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGEL 896
+ + RE + ++ ++ D +V+ + + KI+ + ++P L
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL 267
Query: 897 FGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECT 956
+ + N + T+ + + ++ L+ +++
Sbjct: 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ-FPQSPLQSYNFALSSIKDVV 326
Query: 957 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016
+L+ + + + A L + L L
Sbjct: 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLE-------------F 373
Query: 1017 ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVS 1076
+T + R+AA I+ + + L L +N S
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL------MNDQSLQV 427
Query: 1077 MGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKD 1136
T+ ++ S + + G + ++ + + +
Sbjct: 428 KETTAWCIGRIADSVAESIDPQ-QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE 486
Query: 1137 SNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGL-EMLQ 1195
+ + L + E R + V+ + +
Sbjct: 487 ATPSPIYNFY----------PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536
Query: 1196 KALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTL-RDEGYSLTESEA 1254
+ SI +++ L + Q + L ++ + + + R S+
Sbjct: 537 ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD 596
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT------KTLPYILEGLRSKNNRTR 1308
+ + + + + + PY+L+ L ++
Sbjct: 597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656
Query: 1309 IECVDLVGFLIDHHGAEISGQLKSL--QIVASLTAER-DGEIRKAALNTLATGYKILGED 1365
I V + + + + ++ + ++ E++ A L+ +G D
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716
Query: 1366 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1425
Y+ + + + + + E + + + +V + I D
Sbjct: 717 FIPYLNDIMALCVAAQNTKPENGTLEAL--------DYQIKVLEAVLDAYVGIVAGLHDK 768
Query: 1426 SQSVS 1430
+++
Sbjct: 769 PEALF 773
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 0.001
Identities = 70/591 (11%), Positives = 171/591 (28%), Gaps = 61/591 (10%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY----DSNKNL 911
P L L+S D+ + A+ KI E++ + + + + S+ +
Sbjct: 129 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 188
Query: 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA------ 965
+ + + A+ ++ GD + +R+ L L
Sbjct: 189 RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 248
Query: 966 AVHLDKMVPYVTTALTDAKLG-AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI-AMTD 1023
H+ +V Y+ D A + + L++Q L P + M
Sbjct: 249 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 308
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083
D+ + ++ I + A + I+ +
Sbjct: 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTI 368
Query: 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1143
S + S ++P + ++ ++ V+ +L + + +
Sbjct: 369 SDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 428
Query: 1144 RM----------VVRRFKFEDPRIEQI-------------QELENDMMKYFREDLHRRLL 1180
M +++ + + I + + +K +L +R+L
Sbjct: 429 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 488
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
++ + Q +++ L +L V F K LL + + + L D
Sbjct: 489 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 548
Query: 1241 TLRD-------------------EGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTK 1281
++ + + L CL + + +
Sbjct: 549 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 608
Query: 1282 QIVNFYSAT--KTLPYILEGLRSKNNRT--RIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337
+ VN T + + + + + I +DL+ L + G I + I+
Sbjct: 609 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 668
Query: 1338 SL---TAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1385
+ ++ E+R+++ L K + + + + L+ F
Sbjct: 669 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2015 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.96 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.93 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.89 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.83 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.81 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.71 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.71 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.69 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.23 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.15 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.01 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.93 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.41 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.21 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.17 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.08 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.03 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.98 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.88 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.83 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.74 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.7 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 97.4 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 97.36 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.27 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.05 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 96.97 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 96.21 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 95.66 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 93.96 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 92.97 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 92.73 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 92.37 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 92.13 | |
| d1elka_ | 153 | Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | 89.43 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 87.87 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 86.05 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 84.6 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.5e-24 Score=304.89 Aligned_cols=1025 Identities=14% Similarity=0.137 Sum_probs=634.8
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCC-CCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHH
Q 000156 15 PWEDRLLHKNWKVRNEANIDLAALCDSITD-PKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (2015)
Q Consensus 15 pl~erl~~k~WK~R~~ayeeL~~~~~~~~d-~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~~~~ 93 (2015)
.|.|++.|.|++.|.+|.++|.+.++...- -++..+.++.+.+.+.+.|+|+.||..|+.||..++..... .....
T Consensus 7 ~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~---~~~~~ 83 (1207)
T d1u6gc_ 7 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 83 (1207)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH---hhHHH
Confidence 367899999999999999999999864321 12334667778888899999999999999999999887654 24567
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHh-hhh-------hhhHHHHH----HHH-hhcCChhhHHHHHHHHHHHHHHhC
Q 000156 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVE-LEA-------VDVFLDVM----EKA-IKNKVAKAVVPAIDVMFQALSEFG 160 (2015)
Q Consensus 94 v~~~LieK~l~~k~~~k~~a~~~ll~~~E-~~~-------~~~v~~~L----~~~-~~~KnpKv~~~~l~~L~~~l~~fG 160 (2015)
+++.|+...++.+..+|+.+.-++-.+++ +.. ...++..+ ... ...+++.++.+++.+|.+++..||
T Consensus 84 l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g 163 (1207)
T d1u6gc_ 84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 163 (1207)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 88888888776788888887655544443 211 12233333 333 346788999999999999999999
Q ss_pred CCCcC-hhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchh
Q 000156 161 AKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRA 239 (2015)
Q Consensus 161 ~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs 239 (2015)
....+ ...+++.+.+.+.|++..||..|..++..+..++++..+... +..+-+.+.+-. ....|-..-
T Consensus 164 ~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~---------~~~ll~~l~~~~--~~~~~~~~~ 232 (1207)
T d1u6gc_ 164 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL---------IEHLLSELSKND--SMSTTRTYI 232 (1207)
T ss_dssp SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTH---------HHHHHHHHHHTC--SSCSCTTHH
T ss_pred HhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH---------HHHHHHHHccCC--CHHHHHHHH
Confidence 86554 456999999999999999999999999999999887533221 122222222211 111111000
Q ss_pred hhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCCC
Q 000156 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRI 318 (2015)
Q Consensus 240 ~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki 318 (2015)
+.-.... ...|. .+.+| .+ +|+ +-..+.+.+.+=..|..++..+..++. .+..
T Consensus 233 ~~l~~l~-----~~~~~------------~~~~~--l~--~i~-----~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 286 (1207)
T d1u6gc_ 233 QCIAAIS-----RQAGH------------RIGEY--LE--KII-----PLVVKFCNVDDDELREYCIQAFESFVRRCPKE 286 (1207)
T ss_dssp HHHHHHH-----HHSSG------------GGTTS--CT--THH-----HHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHH-----HHcch------------hhHHH--HH--HHH-----HHHHHHhcCccHHHHHHHHHHHHHHHHhChhh
Confidence 0000000 00000 01111 00 111 122233333444445555555555442 2221
Q ss_pred CCCChHHHHHHHHH-------------------------------------HhcccCHHHHHHHHHHHHHHHHHhhhcch
Q 000156 319 APGDFTEVCRTLKK-------------------------------------LITDVNIAVAVEAIQAIGNLARGLRTHFS 361 (2015)
Q Consensus 319 ~~~~y~~l~~~L~k-------------------------------------~l~D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (2015)
....+.+++..+.+ ...|.+..++..|++|++.++...+..+.
T Consensus 287 ~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~ 366 (1207)
T d1u6gc_ 287 VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 366 (1207)
T ss_dssp CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred hhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11112222222221 12356677899999999999988777888
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC-----------------------ChHhHHHHHHHHhhcCChH
Q 000156 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL-----------------------NLVDVVEDVKTSVKNKVPL 418 (2015)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~-----------------------~l~~il~~l~~~L~~Knp~ 418 (2015)
.+...++|.++..++|....|+.++..++..++..... .+..+++.+...++++++.
T Consensus 367 ~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~ 446 (1207)
T d1u6gc_ 367 EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVK 446 (1207)
T ss_dssp HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchh
Confidence 89999999999999999999999999999988765100 0123555666777899999
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHH
Q 000156 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (2015)
Q Consensus 419 vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~--~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI 496 (2015)
+|..++.++..+....+. .+.+++..+++.+...+.|... .+|..+..++..+....+.+.+.+++..+.+
T Consensus 447 ~r~~~~~~l~~l~~~~~~-~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~------ 519 (1207)
T d1u6gc_ 447 TRQCCFNMLTELVNVLPG-ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVP------ 519 (1207)
T ss_dssp HHHHHHHHHHHHHHHSTT-TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHH------
T ss_pred HHHHHHHHHHHHHHHcch-HHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhh------
Confidence 999999999887766543 3556778899999999987654 6788888888777766665555555444332
Q ss_pred HHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCC
Q 000156 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK 576 (2015)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~ 576 (2015)
T Consensus 520 -------------------------------------------------------------------------------- 519 (1207)
T d1u6gc_ 520 -------------------------------------------------------------------------------- 519 (1207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccc--------cchHHHH----HHH
Q 000156 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--------LDQSVEI----LVR 644 (2015)
Q Consensus 577 ~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~--------~~~~~~~----Lv~ 644 (2015)
.+...+.+..|+.|.+++..+...+..... .....+. ++.
T Consensus 520 ----------------------------~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 571 (1207)
T d1u6gc_ 520 ----------------------------PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK 571 (1207)
T ss_dssp ----------------------------HHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH
T ss_pred ----------------------------hHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHH
Confidence 222334444555555555555544433211 0111121 222
Q ss_pred HHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhC---hhHHHHH
Q 000156 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG---PGFIFER 721 (2015)
Q Consensus 645 ~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~---~~~Vl~~ 721 (2015)
.+. -.+....+...++.++..++...+......+..+++.+++++.+...|..+..++..++.... ...++..
T Consensus 572 ~l~----~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~ 647 (1207)
T d1u6gc_ 572 RLK----AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGE 647 (1207)
T ss_dssp HHS----CSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHH
T ss_pred HHH----hcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 221 134556788899999999888776554556788899999999988788888888888776432 2233444
Q ss_pred HHHHh---hhCCChhHHHHHHHHHHHHHHHhCCCCC--ChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHh
Q 000156 722 LYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKG 796 (2015)
Q Consensus 722 L~~~l---~~~KnpKv~~~~l~~L~~li~~fG~~~l--~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~ 796 (2015)
+++.+ ....++.++..++..+..++..++.... .+..++..+..+ +.+.+..||..+..++..+....+..+..
T Consensus 648 ~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~l-l~~~d~~v~~~~l~~l~~l~~~~~~~~~~ 726 (1207)
T d1u6gc_ 648 GVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL-ISESDMHVSQMAISFLTTLAKVYPSSLSK 726 (1207)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGG-SCTTCHHHHHHHHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccc-cccccHHHHHHHHHHHHHHHhhcchhhhh
Confidence 33332 2577899999999999999998875422 134566666776 89999999999999999998877766666
Q ss_pred hhhhccHHHHHHHHH-------------HHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhc-
Q 000156 797 FLADVKPALLSALDA-------------EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL- 862 (2015)
Q Consensus 797 ~L~~lkp~ll~~Le~-------------ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l- 862 (2015)
+...+-+.+...+.. -|..+.... . +... ...+...+....
T Consensus 727 ~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~---------------------~---~~~~-~~~l~~~l~~~~~ 781 (1207)
T d1u6gc_ 727 ISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTG---------------------T---NNLG-YMDLLRMLTGPVY 781 (1207)
T ss_dssp TTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTC---------------------C---TTCS-HHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhcc---------------------c---cccc-hHHHHHHHHHhhc
Confidence 666666655544321 111100000 0 0000 000111122222
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHH
Q 000156 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2015)
Q Consensus 863 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL--~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ 940 (2015)
....+..+..++..+...+.......... ...++..+...+ .+.+..++..++.+++.++..++..+. ..+...
T Consensus 782 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~~---~~l~~~ 857 (1207)
T d1u6gc_ 782 SQSTALTHKQSYYSIAKCVAALTRACPKE-GPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQ---LELKSV 857 (1207)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHSCCC-SHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSC---THHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccch---HHHHHH
Confidence 22245555566665555543211111111 123333332222 334567888899999999988886543 346677
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC---CChhhhHHHH
Q 000156 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPA 1017 (2015)
Q Consensus 941 ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl 1017 (2015)
++..+.|....||.+|..+++.++.. .++.++|.+...+.+. +..+..++..+.+.+...+.. +....++..+
T Consensus 858 l~~~l~~~~~~vr~aAa~aLg~l~~~-~~~~~lp~il~~l~~~---~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L 933 (1207)
T d1u6gc_ 858 ILEAFSSPSEEVKSAASYALGSISVG-NLPEYLPFVLQEITSQ---PKRQYLLLHSLKEIISSASVVGLKPYVENIWALL 933 (1207)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHh-hHHHHhHHHHHHHhcC---chHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999988764 4578889888888754 456777888888877655432 1223444557
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000156 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSK 1097 (2015)
Q Consensus 1018 ~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1097 (2015)
+..+.+.+.+||..+.+|++.+....+...+. .
T Consensus 934 ~~~~~~~~~~vr~~~a~~lg~L~~~~~~~~lp-~---------------------------------------------- 966 (1207)
T d1u6gc_ 934 LKHCECAEEGTRNVVAECLGKLTLIDPETLLP-R---------------------------------------------- 966 (1207)
T ss_dssp TTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHH-H----------------------------------------------
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHhcCHHHHHH-H----------------------------------------------
Confidence 77789999999999999998765332222111 1
Q ss_pred CCCCCCccCCCCCCCCCCCCccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHH
Q 000156 1098 HGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHR 1177 (2015)
Q Consensus 1098 ~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~ 1177 (2015)
|..
T Consensus 967 -----------------------------------------------------------------------------L~~ 969 (1207)
T d1u6gc_ 967 -----------------------------------------------------------------------------LKG 969 (1207)
T ss_dssp -----------------------------------------------------------------------------HTT
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 111
Q ss_pred hhcccCHHHHHHHHHHHHHhcCcChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhh
Q 000156 1178 RLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVF 1257 (2015)
Q Consensus 1178 ~lf~~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~ 1257 (2015)
.|-+.|+..|..++..+..++...+..+...+.-++.-+...+.|+|..|-..++..+..+.... ..+-......+
T Consensus 970 ~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~----p~li~~~l~~l 1045 (1207)
T d1u6gc_ 970 YLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK----PSLIRDLLDTV 1045 (1207)
T ss_dssp TSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHC----GGGTGGGHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC----hHHHHHHHHHH
Confidence 12233444455555555544544443333333333333334579999999999998888765433 23333346789
Q ss_pred hhHHHHhhcC------------------ChHHHHHHHHHHHHHHhhccC----ccccHHHHHhhhcCCChhhHHHHHHHH
Q 000156 1258 LPCLVEKSGH------------------NIEKVREKMRELTKQIVNFYS----ATKTLPYILEGLRSKNNRTRIECVDLV 1315 (2015)
Q Consensus 1258 lP~L~~K~Gd------------------~k~~vr~~v~~il~~i~~vy~----~skvf~~l~~gl~sKN~r~R~ecl~~l 1315 (2015)
+|.|+..... .+-.+|+..-+.+-.+-..+. ...++..+..|++-.+ ..|.=|...+
T Consensus 1046 lp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~~~~~~~~~gl~d~~-di~~~~~~~l 1124 (1207)
T d1u6gc_ 1046 LPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHY-DIKMLTFLML 1124 (1207)
T ss_dssp HHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSSCH-HHHHHHHHHH
T ss_pred HHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHhcccchH-HHHHHHHHHH
Confidence 9999876543 333477776665544433322 2356777888997754 7899999999
Q ss_pred HHHHHhhCCCcccccchH-HHHHHh----hc--------cCChHHHHHHHHHHHHHHHH
Q 000156 1316 GFLIDHHGAEISGQLKSL-QIVASL----TA--------ERDGEIRKAALNTLATGYKI 1361 (2015)
Q Consensus 1316 ~~li~~~g~~~~~~~k~l-~~ia~~----i~--------drd~~VR~AAl~~l~~~y~~ 1361 (2015)
..++......+......| +.+.+. +. ||..+...+||+++..+..+
T Consensus 1125 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~~l~~~ 1183 (1207)
T d1u6gc_ 1125 VRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTI 1183 (1207)
T ss_dssp HHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHHHHHHHHcC
Confidence 999988775543222221 222222 22 33356677777777766433
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3e-22 Score=283.32 Aligned_cols=911 Identities=14% Similarity=0.140 Sum_probs=565.6
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhccCCCC--c----hHHHhhhhhhHh-hhcCCcHHHHHHHHHHHHHHHHHhchhhhh
Q 000156 17 EDRLLHKNWKVRNEANIDLAALCDSITDPK--D----NRIRELGPLFKK-TVADSNAPVQDKALDALIAYLKAADADAGR 89 (2015)
Q Consensus 17 ~erl~~k~WK~R~~ayeeL~~~~~~~~d~~--~----~~~~~~~~~~~k-~v~DsN~~vqe~~leal~~~l~~~~~~~~~ 89 (2015)
...+.+++++.|-.+...|...+...+... . .....+.+.+.. .....+..++..+++++..++.+.+.....
T Consensus 89 ~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~ 168 (1207)
T d1u6gc_ 89 CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN 168 (1207)
T ss_dssp HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT
T ss_pred HHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHH
Confidence 345566777777666665555544332211 0 111222233333 355678899999999999999998765566
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh---hhhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCCCcC
Q 000156 90 YAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA---VDVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (2015)
Q Consensus 90 ~~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~---~~~v~~~L~~~~-~~KnpKv~~~~l~~L~~~l~~fG~~~i~ 165 (2015)
+...+++.++...-..++.+|..|..++-.++..-. ...++..++..+ .+.++.++..++.++..+.+..|....+
T Consensus 169 ~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 248 (1207)
T d1u6gc_ 169 FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 248 (1207)
T ss_dssp THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHH
Confidence 677888888776444789999999999888775522 245667676665 4667777888888888888877764333
Q ss_pred -hhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhc-CCCCCCCccchhhhhH
Q 000156 166 -PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDK 243 (2015)
Q Consensus 166 -~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~-~~~~~P~R~~rs~~~~ 243 (2015)
+..+++.+...+.+.+..||+.+...+..+....+.. +.+++ . ++-..+-+. .. -|. ....
T Consensus 249 ~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~-~--------~ii~~~l~~l~~--dp~-----~~~~ 311 (1207)
T d1u6gc_ 249 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VYPHV-S--------TIINICLKYLTY--DPN-----YNYD 311 (1207)
T ss_dssp SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHHHH-H--------HHHHHHTTCCCC--C-----------
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhh-hhhhH-H--------HHHHHHHHHHhc--Ccc-----hhhh
Confidence 4678999999999999999999999999988888764 43332 1 111111111 00 010 0000
Q ss_pred hhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCC
Q 000156 244 ELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGD 322 (2015)
Q Consensus 244 ~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~ 322 (2015)
.. . +.......+.+ +..+ ... +..+....+..|+.|+.+++.|..++. .+......
T Consensus 312 -~~----------~---~~~~~~~~~~~--~~~~------~~~-~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~ 368 (1207)
T d1u6gc_ 312 -DE----------D---EDENAMDADGG--DDDD------QGS-DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 368 (1207)
T ss_dssp -----------------------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred -hH----------H---HHHhhhhhhcc--chhh------hhH-HHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 00 0 00000000000 0000 011 345666788999999999999999874 45544455
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh-------------------cchhhhHhHHHHHHHHhccCcHHHH
Q 000156 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT-------------------HFSGSSRFLLPVLLEKLKEKKPTVA 383 (2015)
Q Consensus 323 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~-------------------~f~~~~~~llp~LL~klkdkk~~V~ 383 (2015)
|..+++.|...+.|.+..|+..++.++..+....+. .+..+...+++.+.+.++++...++
T Consensus 369 ~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r 448 (1207)
T d1u6gc_ 369 YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTR 448 (1207)
T ss_dssp HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHH
Confidence 678889999999999999999999999999876542 1345677889999999999999999
Q ss_pred HHHHHHHHHHHHhcC----CChHhHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCC
Q 000156 384 ESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (2015)
Q Consensus 384 ~aa~~aL~al~~~~~----~~l~~il~~l~~~L~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds 457 (2015)
.++..++..++.... ..+..+++.+...+.+++ ..+|..++.++..++..+....+.+++..+.+.+..++.|.
T Consensus 449 ~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 528 (1207)
T d1u6gc_ 449 QCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP 528 (1207)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccc
Confidence 999999999887621 224556677777777544 57899999999999998888878888999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCch------HHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcc
Q 000156 458 TPEVRDAAFSVLAAIAKSVGMR------PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASES 531 (2015)
Q Consensus 458 ~~~VR~aA~~al~~l~~~~Ge~------~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 531 (2015)
...+|..|..+++.+.+.++.. .+.+++..+-+....++ .... .. .
T Consensus 529 ~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l----~~~~-------~~------------~----- 580 (1207)
T d1u6gc_ 529 FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRL----KAAD-------ID------------Q----- 580 (1207)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHH----SCSS-------SC------------H-----
T ss_pred cHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHH----Hhcc-------cc------------h-----
Confidence 9999999999999999987642 23344444332211111 1100 00 0
Q ss_pred ccccccccc-------ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCC----CCCCCCCCCCCCCCHHHHHHHhhc
Q 000156 532 SFVRKSAAS-------MLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK----LTEAPEDVEPSEMSLEEIESRLGS 600 (2015)
Q Consensus 532 ~~~~~~~~s-------~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~----~~~~~~~~~~~~~s~ee~e~~~~~ 600 (2015)
.++..+.. ..+..-.+. .+ ..-+.-...-.....+..+.. .... .....+. .-+..
T Consensus 581 -e~~~~al~~l~~l~~~~~~~~~~~-~~---~~l~~l~~~l~~~~~r~~a~~~l~~i~~~---~~~~~~~-~~l~~---- 647 (1207)
T d1u6gc_ 581 -EVKERAISCMGQIICNLGDNLGSD-LP---NTLQIFLERLKNEITRLTTVKALTLIAGS---PLKIDLR-PVLGE---- 647 (1207)
T ss_dssp -HHHHHHHHHHHHHHHHTGGGCCTH-HH---HHHHHHHHHTTSSSHHHHHHHHHHHHTTC---SSCCCCH-HHHHH----
T ss_pred -HHHHHHHHHHHHHHHHhhhhhHHH-HH---HHHHHHHHHhcchhhHHHHHHHHHHHHHh---ccchhHH-HHHHH----
Confidence 00000000 000000000 00 000000000000000000000 0000 0000000 01111
Q ss_pred cCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccc-cch-HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCc
Q 000156 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN-LDQ-SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFP 678 (2015)
Q Consensus 601 ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~-~~~-~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~ 678 (2015)
+.+.+...+.+.+|..|..++..|..++..... ... ..+.++..+. +.+.|.+.++.+.+++++..++...+...
T Consensus 648 -~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~--~ll~~~d~~v~~~~l~~l~~l~~~~~~~~ 724 (1207)
T d1u6gc_ 648 -GVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELP--PLISESDMHVSQMAISFLTTLAKVYPSSL 724 (1207)
T ss_dssp -HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCG--GGSCTTCHHHHHHHHHHHHHHTTSCGGGG
T ss_pred -HHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhc--cccccccHHHHHHHHHHHHHHHhhcchhh
Confidence 124567788999999999999999999888433 221 2233333332 45789999999999999998877554322
Q ss_pred hhHHHHHHHHHHhhhcchhhhHHHHHHHHH------------------------------------------------HH
Q 000156 679 KKCVVLCLLGISERVADIKTRAHAMKCLTT------------------------------------------------FS 710 (2015)
Q Consensus 679 ~~~~~~il~~LveKlgD~K~r~~a~~~L~~------------------------------------------------l~ 710 (2015)
......+++.++..+.++.....+..++.. +.
T Consensus 725 ~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 804 (1207)
T d1u6gc_ 725 SKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804 (1207)
T ss_dssp GGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHH
Confidence 222333344444433332222111111111 11
Q ss_pred hhhChh--HHHHHHHHHhh-hCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000156 711 EAVGPG--FIFERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2015)
Q Consensus 711 e~~~~~--~Vl~~L~~~l~-~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (2015)
...+.. .++..++.... ...++.++..++..+.++....+... ...+.+.+... +.+.+..||.+|..++|.+.
T Consensus 805 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~--~~~l~~~l~~~-l~~~~~~vr~aAa~aLg~l~ 881 (1207)
T d1u6gc_ 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG--QLELKSVILEA-FSSPSEEVKSAASYALGSIS 881 (1207)
T ss_dssp HHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCS--CTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccc--hHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHH
Confidence 111100 01111111111 13456778888888888877776543 23566777777 99999999999999999887
Q ss_pred HHhChhHHhhhhhccHHHHHHHHH--------------HHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccc
Q 000156 788 KFVGPDIKGFLADVKPALLSALDA--------------EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGK 853 (2015)
Q Consensus 788 ~~~G~~l~~~L~~lkp~ll~~Le~--------------ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~ 853 (2015)
....+.+. |.+++.++. -+.... .+.+ ......
T Consensus 882 ~~~~~~~l-------p~il~~l~~~~~~~~~ll~al~ei~~~~~------------------------~~~~--~~~~~~ 928 (1207)
T d1u6gc_ 882 VGNLPEYL-------PFVLQEITSQPKRQYLLLHSLKEIISSAS------------------------VVGL--KPYVEN 928 (1207)
T ss_dssp HHTHHHHH-------HHHHHHHHSCGGGHHHHHHHHHHHHHSSC------------------------STTT--HHHHHH
T ss_pred HhhHHHHh-------HHHHHHHhcCchHHHHHHHHHHHHHHhcc------------------------hhhh--HHHHHH
Confidence 65443322 333333321 111100 0000 011223
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
+.+.++..+.+.+|.+|..+.+.++.++.. . ...+++.|..++.|.+..++..++.++..+...++..+.+|
T Consensus 929 i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~-----~---~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~ 1000 (1207)
T d1u6gc_ 929 IWALLLKHCECAEEGTRNVVAECLGKLTLI-----D---PETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPL 1000 (1207)
T ss_dssp HHHHHTTCCCCSSTTHHHHHHHHHHHHHHS-----S---GGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHhc-----C---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 445566778888999999999999988742 1 25678999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcC-CC-------------------ChhHHH
Q 000156 934 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDA-KL-------------------GAEGRK 991 (2015)
Q Consensus 934 ~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~-k~-------------------~p~~R~ 991 (2015)
++.+++.++..|+|++..||.+|..|+++++++-+ +.+.++.+.+.|-+. +. +-++|.
T Consensus 1001 l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk 1080 (1207)
T d1u6gc_ 1001 LKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRK 1080 (1207)
T ss_dssp HHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHH
Confidence 99999999999999999999999999999998865 234445555444211 00 245899
Q ss_pred HHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCCh
Q 000156 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1057 (2015)
Q Consensus 992 ~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~ 1057 (2015)
.+++.+...+......-++.+++..+...|.| +.|||--+.-.+..+....+.+ +.+++..|-+
T Consensus 1081 ~a~e~~~~~l~~~~~~~~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~-~~~~l~~~~~ 1144 (1207)
T d1u6gc_ 1081 AAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSA-VLQRLDRLVE 1144 (1207)
T ss_dssp HHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHH-HHTTTTTTHH
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHH
Confidence 99999888887655555677888889999999 5699999999999988877754 4455555433
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.7e-21 Score=252.48 Aligned_cols=554 Identities=18% Similarity=0.176 Sum_probs=372.7
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000156 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2015)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2015)
+.|.+.+.+.+...|..|+..|..++..-... ..-.++++.|...+.|.. .|...+++.++.++.-++. ..++..+
T Consensus 13 ~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~-~~~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~~~~~~--~~~~~~l 88 (588)
T d1b3ua_ 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLVGG--PEYVHCL 88 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHHTHHHHHHHTCCCCH-HHHHHHHHHHTTCSGGGTS--GGGGGGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcH-hhHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHcCC--hhHHHHH
Confidence 45778899999999999999998876421000 012568888888888654 3555555555555443322 2468889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH----HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000156 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV----VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (2015)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~i----l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (2015)
+|.+...+.+....||+++..++..+... .+...+ +|.+....++.....|..++..+..+........ .
T Consensus 89 l~~l~~l~~~~~~~Vr~~a~~~l~~i~~~--~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~----~ 162 (588)
T d1b3ua_ 89 LPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV----K 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----H
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH----H
Confidence 99999999999999999999999999875 343333 3433344456667888888888888776655432 3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000156 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (2015)
Q Consensus 444 ~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 523 (2015)
..+.+.+.+++.|.++.||.+|..+++.+.+.++.+.....+ -
T Consensus 163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l---~---------------------------------- 205 (588)
T d1b3ua_ 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI---I---------------------------------- 205 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTH---H----------------------------------
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHH---H----------------------------------
Confidence 667889999999999999999999999998877754221111 0
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000156 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (2015)
Q Consensus 524 ~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 603 (2015)
T Consensus 206 -------------------------------------------------------------------------------- 205 (588)
T d1b3ua_ 206 -------------------------------------------------------------------------------- 205 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHH
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (2015)
+-+...+.+.+|..|..|++.+..+....+... ....++..+.. .+.|.+..|+..+.+++..++...+. .....
T Consensus 206 ~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~-~~~~i~~~l~~--~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~ 280 (588)
T d1b3ua_ 206 PMFSNLASDEQDSVRLLAVEACVNIAQLLPQED-LEALVMPTLRQ--AAEDKSWRVRYMVADKFTELQKAVGP--EITKT 280 (588)
T ss_dssp HHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH-HHHHTHHHHHH--HHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH-HHHHHHHHHHH--hcccccHHHHHHHHHhHHHHHHHhhh--hhhhh
Confidence 112233344555555555555555544322111 11122222211 13455555666555555555543221 01112
Q ss_pred HHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhChh--------HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC
Q 000156 684 LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 753 (2015)
Q Consensus 684 ~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~--------~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~ 753 (2015)
.+++.+..-+.| ..+|..+.+.|..+++..+.. .+++.+... ..+.+++||..+..++..+...+|...
T Consensus 281 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~ 359 (588)
T d1b3ua_ 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN 359 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH
T ss_pred hhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh-hcCCChHHHHHHHHHHhhhhhccchhH
Confidence 344444444444 345666666666666654422 223333333 357888888888888777777666421
Q ss_pred CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccc
Q 000156 754 LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES 833 (2015)
Q Consensus 754 l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~ 833 (2015)
....+++.+... +.+.++.||..+...++.+...+|..-.
T Consensus 360 -~~~~l~p~l~~~-l~d~~~~v~~~~~~~l~~~~~~~~~~~~-------------------------------------- 399 (588)
T d1b3ua_ 360 -TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQL-------------------------------------- 399 (588)
T ss_dssp -HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHHH--------------------------------------
T ss_pred -HHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHhhcchhhh--------------------------------------
Confidence 234566666666 8888999999988888777666553210
Q ss_pred cCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHH
Q 000156 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (2015)
Q Consensus 834 ~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~ 913 (2015)
...+.+.+...+.|.+|++|..+++.+..++...+... ....+...+...+.|.+..|+.
T Consensus 400 -----------------~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~D~~~~VR~ 459 (588)
T d1b3ua_ 400 -----------------SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp -----------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHH
T ss_pred -----------------hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh---HHHHHHHHHHhhccCCchhHHH
Confidence 01123455666788999999999999999886432221 1256777788889999999999
Q ss_pred HHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhH
Q 000156 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEG 989 (2015)
Q Consensus 914 ~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----~~ll~~l~~~L~~~k~~p~~ 989 (2015)
.|+.+++.|+..+|+.+. ...++|.+...+.|++..+|.++..|+..+...++. ..++|.+...+.|+ .|.+
T Consensus 460 ~A~~~L~~l~~~~~~~~~--~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~--v~nV 535 (588)
T d1b3ua_ 460 AATSNLKKLVEKFGKEWA--HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANV 535 (588)
T ss_dssp HHHHHHHHHHHHHCHHHH--HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHH
T ss_pred HHHHHHHHHHHHhCcHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCC--CHHH
Confidence 999999999999998753 457889999999999999999999999999988763 45777777877776 5899
Q ss_pred HHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHH
Q 000156 990 RKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 990 R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
|..++..|.......+. ..+...+.| +...++|++.|||..|.+++..+
T Consensus 536 R~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 536 RFNVAKSLQKIGPILDN-STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCc-HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999876655532 234555667 44567999999999999999765
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.3e-18 Score=224.31 Aligned_cols=376 Identities=14% Similarity=0.108 Sum_probs=278.2
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHH
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (2015)
+.+.+.+.|.++..|..+...+..++...+... ....++..|.. ..+|.+..|+..+++++..++...+. .....
T Consensus 167 ~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~--l~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~ 241 (588)
T d1b3ua_ 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN-VKSEIIPMFSN--LASDEQDSVRLLAVEACVNIAQLLPQ--EDLEA 241 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH-HHHTHHHHHHH--HHTCSCHHHHTTHHHHHHHHHHHSCH--HHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHH-HHHHHHHHHHH--HhcCCchhhHHHHHHHHHHhhccCCH--HHHHH
Confidence 345667789999999999999998887643211 11223333322 24788899999999999998876532 22344
Q ss_pred HHHHHHHhhhcch--hhhHHHHHHHHHHHhhhChhHHHHHHHH---HhhhCCChhHHHHHHHHHHHHHHHhCCCCC---C
Q 000156 684 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYK---IMKDHKNPKVLSEGILWMVSAVEDFGVSHL---K 755 (2015)
Q Consensus 684 ~il~~LveKlgD~--K~r~~a~~~L~~l~e~~~~~~Vl~~L~~---~l~~~KnpKv~~~~l~~L~~li~~fG~~~l---~ 755 (2015)
.++|.+..-+.|. ++|..+.++|..+++..+++.....+++ .+..+.++.||..++..+..++..++.... .
T Consensus 242 ~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~ 321 (588)
T d1b3ua_ 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 5677777666674 5899999999999998887655444433 234688999999999999999987775432 1
Q ss_pred hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccC
Q 000156 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (2015)
Q Consensus 756 ~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~ 835 (2015)
...+++.+... +.+.++.||.++..++..+...+|... +++.
T Consensus 322 ~~~i~~~l~~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~--~~~~----------------------------------- 363 (588)
T d1b3ua_ 322 MSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN--TIEH----------------------------------- 363 (588)
T ss_dssp HHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHH-----------------------------------
T ss_pred HHHHHHHHHHh-hcCCChHHHHHHHHHHhhhhhccchhH--HHHH-----------------------------------
Confidence 35678888887 899999999999888887777666421 1111
Q ss_pred CCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhccccchHHHHHH
Q 000156 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMA 914 (2015)
Q Consensus 836 s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~-~~~~eL~~~L~~rL~DsN~~V~~~ 914 (2015)
+.+.+...+.|.++.+|..++..+..+.... .. .....+++.|...+.|.|+.++..
T Consensus 364 ------------------l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~----~~~~~~~~ll~~l~~~~~d~~~~~r~~ 421 (588)
T d1b3ua_ 364 ------------------LLPLFLAQLKDECPEVRLNIISNLDCVNEVI----GIRQLSQSLLPAIVELAEDAKWRVRLA 421 (588)
T ss_dssp ------------------THHHHHHHHTCSCHHHHHHHHTTCHHHHHHS----CHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred ------------------HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhc----chhhhhhHHHHHHHHHHhcccHHHHHH
Confidence 2345566677888888988888887776531 11 112567788888889999999999
Q ss_pred HHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCCCChhHH
Q 000156 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEGR 990 (2015)
Q Consensus 915 Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~----~ll~~l~~~L~~~k~~p~~R 990 (2015)
++.+++.++..+|.++ +...+.|.++..+.|....||.+|..+|..++..+|.+ .++|.+...+.++ +...|
T Consensus 422 ~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~--~~~~R 497 (588)
T d1b3ua_ 422 IIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP--NYLHR 497 (588)
T ss_dssp HHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS--CHHHH
T ss_pred HHHHHHHHHHHcChHh--HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCC--CHHHH
Confidence 9999999999999875 34578888999999999999999999999999998853 4666666666666 47889
Q ss_pred HHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHH
Q 000156 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETI 1048 (2015)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~ 1048 (2015)
..++..+.......+.......+++.+..++.|+.++||.++..+|..+...++...+
T Consensus 498 ~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~ 555 (588)
T d1b3ua_ 498 MTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL 555 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhH
Confidence 8888777765443322111244566699999999999999999999999888887543
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=3.9e-19 Score=243.69 Aligned_cols=495 Identities=13% Similarity=0.151 Sum_probs=333.7
Q ss_pred HHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHH
Q 000156 382 VAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (2015)
Q Consensus 382 V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~ 460 (2015)
+|.++..+|+.+... +..-++.+++.+...+++.+|..|..++..|+.+.+.+. ..+.++++.++|.+...+.|.++.
T Consensus 373 ~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~-~~~~~~l~~li~~l~~~l~d~~~~ 451 (888)
T d1qbkb_ 373 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCLSDKKAL 451 (888)
T ss_dssp SHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSH-HHHTTTHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHH-HHhcccchhhhHHHHHhccCCCHH
Confidence 677888888877654 112255677777788889999999999988887665543 345678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccccc
Q 000156 461 VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540 (2015)
Q Consensus 461 VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s 540 (2015)
||.+|..+++.+...+.......++..
T Consensus 452 Vr~~a~~~l~~~~~~~~~~~~~~~~~~----------------------------------------------------- 478 (888)
T d1qbkb_ 452 VRSITCWTLSRYAHWVVSQPPDTYLKP----------------------------------------------------- 478 (888)
T ss_dssp HHHHHHHHHHHTHHHHHSSCHHHHTTT-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhh-----------------------------------------------------
Confidence 999999998876654432211111000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHH
Q 000156 541 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLE 620 (2015)
Q Consensus 541 ~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ 620 (2015)
+-+.++..+.+.+++.|..
T Consensus 479 -------------------------------------------------------------~l~~ll~~l~d~~~~V~~~ 497 (888)
T d1qbkb_ 479 -------------------------------------------------------------LMTELLKRILDSNKRVQEA 497 (888)
T ss_dssp -------------------------------------------------------------HHHHHHHHHSSSCHHHHHH
T ss_pred -------------------------------------------------------------hHHHHHHHhcCCCHHHHHH
Confidence 0134566777888888999
Q ss_pred HHHHHHHHHHhc-cccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC-C-chhHHHHHHHHHHhhhcc--
Q 000156 621 AISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-F-PKKCVVLCLLGISERVAD-- 695 (2015)
Q Consensus 621 a~e~L~~~v~~~-~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~-~-~~~~~~~il~~LveKlgD-- 695 (2015)
|+..|..+++.. ....++.+.++..|.. .+.+....+....++++..++...+. + .......+++.++++...
T Consensus 498 a~~al~~l~~~~~~~l~p~~~~il~~l~~--~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 575 (888)
T d1qbkb_ 498 ACSAFATLEEEACTELVPYLAYILDTLVF--AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK 575 (888)
T ss_dssp HHHHHHHHHHHHTTSSGGGHHHHHHHHHH--HTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcc
Confidence 999888888763 3344455555554432 13333334455566777777765432 2 234556677777765432
Q ss_pred --hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCch
Q 000156 696 --IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773 (2015)
Q Consensus 696 --~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~ 773 (2015)
.+......++|..++...+..+. +..- .+...++..+...+.. .+............+.
T Consensus 576 ~~~~~~~~~le~l~~i~~~~~~~~~-~~~~---------~~~~~~~~~l~~~l~~---------~~~~~~~~~~~~~~~~ 636 (888)
T d1qbkb_ 576 DEDKDLFPLLECLSSVATALQSGFL-PYCE---------PVYQRCVNLVQKTLAQ---------AMLNNAQPDQYEAPDK 636 (888)
T ss_dssp TTCTTHHHHHHHHHHHHHHSTTTTH-HHHH---------HHHHHHHHHHHHHHHH---------HHHHHHCTTTSCCCCT
T ss_pred cchHHHHHHHHHHHHHHHHhHHHHh-hhHH---------HHHHHHHHHHHHHHHH---------HHHHhcccccccchhH
Confidence 23444566777776665553321 1100 0111122222222211 1111111111344566
Q ss_pred hHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccc
Q 000156 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGK 853 (2015)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~ 853 (2015)
.+...+..++..+...+|..+..++.. ..
T Consensus 637 ~~~~~~l~~l~~l~~~l~~~~~~~~~~---------------------------------------------------~~ 665 (888)
T d1qbkb_ 637 DFMIVALDLLSGLAEGLGGNIEQLVAR---------------------------------------------------SN 665 (888)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHT---------------------------------------------------SC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhH---------------------------------------------------hh
Confidence 677777777777777777655433211 01
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
+.+-++..+.|.++.+|..|+..+..+.......+.+.. .+++..|...|.|.+..|+..|+.++|.|+..+|..|.+|
T Consensus 666 l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py 744 (888)
T d1qbkb_ 666 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPY 744 (888)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGG
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334566778889999999999999999987666777764 8899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC
Q 000156 934 SKGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (2015)
Q Consensus 934 ~~~llp~ll~~L~D~--k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~ 1005 (2015)
+..+++.++..+.+. +..|++.+..|++.++..++ ++.+++.+...|.+.. +...|..++..+...+...+
T Consensus 745 ~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~-d~~ek~~~~~g~~~~i~~~p 823 (888)
T d1qbkb_ 745 IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTMISVNP 823 (888)
T ss_dssp SHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSC-CSHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHHHHHCc
Confidence 999999999999864 45688999999999887664 5677777888887533 23457777777777665443
Q ss_pred CC--CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHH
Q 000156 1006 GF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILER 1066 (2015)
Q Consensus 1006 ~~--~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~ 1066 (2015)
.. +.+..++. .+....+..++++......|..+...+|.+.....+.+|+|..+..+...
T Consensus 824 ~~~~~~l~~~~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~ 885 (888)
T d1qbkb_ 824 SGVIQDFIFFCD-AVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 885 (888)
T ss_dssp GGTGGGHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHcCCHHHHHHHHHh
Confidence 21 12222222 22334667899999999999999999999888899999999988887764
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=3e-13 Score=181.64 Aligned_cols=679 Identities=12% Similarity=0.126 Sum_probs=415.4
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCC---------
Q 000156 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAK--------- 162 (2015)
Q Consensus 94 v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~--~KnpKv~~~~l~~L~~~l~~fG~~--------- 162 (2015)
+...|-...++..+.+|..|.+.+..+.+-..+ .++..|...+. +.++.++..|...|.+.+..+...
T Consensus 6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~-~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~ 84 (861)
T d2bpta1 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFL-QFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRW 84 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhh
Confidence 333333333567899999999988877653333 45566666664 345678888877776654322210
Q ss_pred --CcCh--hH-HHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccc
Q 000156 163 --IIPP--KR-ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKI 237 (2015)
Q Consensus 163 --~i~~--k~-il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~ 237 (2015)
.++. +. +...+...+.+.++.||..+..++..+.++-.+.. .- |..+..
T Consensus 85 ~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~-------~w-peli~~------------------ 138 (861)
T d2bpta1 85 ITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG-------AW-PELMKI------------------ 138 (861)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT-------CC-HHHHHH------------------
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC-------ch-HHHHHH------------------
Confidence 1221 21 33455666777778888777777776665543210 00 000111
Q ss_pred hhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhc-cCChHHHHHHHHHHHHHhcC-
Q 000156 238 RAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK-ATKWSERKDAVAELTKLAST- 315 (2015)
Q Consensus 238 rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~-s~kWkeR~eaL~~L~~l~~~- 315 (2015)
+.+.+. +..+..|..++..|..+...
T Consensus 139 ----------------------------------------------------L~~~~~s~~~~~~~~~al~~l~~i~e~~ 166 (861)
T d2bpta1 139 ----------------------------------------------------MVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp ----------------------------------------------------HHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred ----------------------------------------------------HHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 111111 12344566677777776632
Q ss_pred -CCCCC--CChHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHHHhhhcch--hhhHhHHHHHHHHhccCcHHHHHHHHH
Q 000156 316 -KRIAP--GDFTEVCRTLKKLI--TDVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQ 388 (2015)
Q Consensus 316 -~ki~~--~~y~~l~~~L~k~l--~D~N~~V~~~A~~~l~~La~~L~~~f~--~~~~~llp~LL~klkdkk~~V~~aa~~ 388 (2015)
+.+.. .....++..+.+.+ .+.+..|+..|+.++..+...+...|. .....+++.+.+.+.+....++..+..
T Consensus 167 ~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 246 (861)
T d2bpta1 167 DPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFG 246 (861)
T ss_dssp STTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHH
Confidence 22211 12233333333333 277888999999999998887776665 345678888999999999999999999
Q ss_pred HHHHHHHhcCCCh----HhHHHHH-HHHhhcCChHHHHHHHHHHHHHHHhcC----------------hhHHHHhhhhHH
Q 000156 389 TLQAMHKAGCLNL----VDVVEDV-KTSVKNKVPLVRSLTLNWVTFCIETSS----------------KAAVLKVHKDYV 447 (2015)
Q Consensus 389 aL~al~~~~~~~l----~~il~~l-~~~L~~Knp~vR~~~l~~L~~~l~~~~----------------~~~l~~~l~~l~ 447 (2015)
++..++......+ ..++..+ ....++.++.+|..++.++..+..... .......+..++
T Consensus 247 ~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 326 (861)
T d2bpta1 247 CLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp HHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987621112 2333333 355678999999999998876543210 011223456667
Q ss_pred HHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCC
Q 000156 448 PICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSG 520 (2015)
Q Consensus 448 p~l~k~L~-------Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~ 520 (2015)
|.+...+. |.+..+|.++..++..+....|+..+..++
T Consensus 327 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------------------------- 371 (861)
T d2bpta1 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVL----------------------------------- 371 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHH-----------------------------------
T ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhc-----------------------------------
Confidence 77776663 344467777777777777776654221111
Q ss_pred CCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhc
Q 000156 521 GSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600 (2015)
Q Consensus 521 ~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ 600 (2015)
T Consensus 372 -------------------------------------------------------------------------------- 371 (861)
T d2bpta1 372 -------------------------------------------------------------------------------- 371 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCc
Q 000156 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFP 678 (2015)
Q Consensus 601 ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~--~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~ 678 (2015)
+.+...+.+.+|+.|..++..+..+...... .....+.++..+.. .+.|.+..|...++.++..+++..+...
T Consensus 372 ---~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T d2bpta1 372 ---EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN--LMNDQSLQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp ---HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH--GGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred ---chhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH--HhcCcchhhhhHHHHHHHHHHHHhchhh
Confidence 1122334566799999998888766544221 11122333333322 4577788888888887777766543211
Q ss_pred --hhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-
Q 000156 679 --KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK- 755 (2015)
Q Consensus 679 --~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~- 755 (2015)
...+..++..++..+ ..+++++..++..+..++..+......
T Consensus 447 ~~~~~~~~ll~~l~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 491 (861)
T d2bpta1 447 DPQQHLPGVVQACLIGL-----------------------------------QDHPKVATNCSWTIINLVEQLAEATPSP 491 (861)
T ss_dssp CTTTTHHHHHHHHHHHH-----------------------------------TSCHHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred hhHHhhhhhhHHHHhcc-----------------------------------ccChHHHHHHHHHHHHHHHHhhhcccch
Confidence 112222222222221 345666666666666666554432211
Q ss_pred ----hhhHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccC
Q 000156 756 ----LKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (2015)
Q Consensus 756 ----~k~li~~l~~~-gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2015)
...++..+... .-.+.+..+|..+..++..+....+..+.+++..+.+.....+...+.....
T Consensus 492 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~------------ 559 (861)
T d2bpta1 492 IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDEN------------ 559 (861)
T ss_dssp GGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGG------------
T ss_pred hhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------
Confidence 12233333222 1245677899999999999999999988888877777777666654322110
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccc-hH
Q 000156 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NK 909 (2015)
Q Consensus 831 ~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~ 909 (2015)
.+.... ....+..+......+..++......+.+. ...++..+...+.+. ..
T Consensus 560 ----------------------~~~~~~----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~ 612 (861)
T d2bpta1 560 ----------------------QLTLED----AQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSA 612 (861)
T ss_dssp ----------------------GCCHHH----HHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGG
T ss_pred ----------------------hhhhhH----HhHHHHHHHHHHHHHHHHHhcchhhHHHH-HHHHHHHHhhhcccCCch
Confidence 000000 00123445566666777776543444443 367888888887554 45
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC
Q 000156 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA 983 (2015)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~ 983 (2015)
.++..++.+++.++..+|..|.+|+..++|.++..+.|....||..+..++..++..++ ++.+++.+...+++.
T Consensus 613 ~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~ 692 (861)
T d2bpta1 613 FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP 692 (861)
T ss_dssp GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCC
Confidence 67888999999999999999999999999999999999999999999999999998886 245666677777766
Q ss_pred CCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCC-----------hHHHHHHHHHHHHHHHHcCh
Q 000156 984 KLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKS-----------SDVRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 984 k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~-----------~~VR~aA~~~L~~l~~~~G~ 1045 (2015)
..++.+|..++..+...+...+.. +.+..++..+.+.+.... .+||+++..++..++..++.
T Consensus 693 ~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 767 (861)
T d2bpta1 693 NARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD 767 (861)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556788988888777666554431 123344444555554332 35788888888888776653
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=2.8e-12 Score=172.08 Aligned_cols=699 Identities=11% Similarity=0.099 Sum_probs=425.1
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCc--HHHHHHHHHHHHHHHHHhchh-------
Q 000156 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSN--APVQDKALDALIAYLKAADAD------- 86 (2015)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN--~~vqe~~leal~~~l~~~~~~------- 86 (2015)
|..-+.+.|=..|.+|-+.|.+..+. +.|.| ...+..++.|.| ..+...|.-.|-.++......
T Consensus 10 L~~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~~---~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~ 82 (861)
T d2bpta1 10 LENSILSPDQNIRLTSETQLKKLSND----NFLQF---AGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHH----CHHHH---HHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhc----CchHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHh
Confidence 44557889999999999999766543 22333 444556665544 445444444333333211100
Q ss_pred -----hhh-hHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhhh----hHHHHHHHHhhcCC-hhhHHHHHHHHHH
Q 000156 87 -----AGR-YAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAVD----VFLDVMEKAIKNKV-AKAVVPAIDVMFQ 154 (2015)
Q Consensus 87 -----~~~-~~~~v~~~LieK~l~-~k~~~k~~a~~~ll~~~E~~~~~----~v~~~L~~~~~~Kn-pKv~~~~l~~L~~ 154 (2015)
... ....+-..++. ++. ..+.+|..+..++-.++..+-++ .+++.|...+.+.+ +.++.+++.+|..
T Consensus 83 ~~~~~i~~~~~~~ik~~ll~-~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~ 161 (861)
T d2bpta1 83 RWITQVSPEAKNQIKTNALT-ALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHHSCHHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred hhHhcCCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 000 11122333333 344 57889988888888877665442 47777777776554 5678889999999
Q ss_pred HHHHhCCCCcC----hhHHHhhhhhhh--cCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcC
Q 000156 155 ALSEFGAKIIP----PKRILKMLPELF--DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVS 228 (2015)
Q Consensus 155 ~l~~fG~~~i~----~k~il~~l~~ll--~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~ 228 (2015)
+++.++...-. +.+++..+...+ .+.+..||..|...+..+..+++.. +... ...+..+
T Consensus 162 i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~-~~~~---~~~~~~~----------- 226 (861)
T d2bpta1 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-MERE---GERNYLM----------- 226 (861)
T ss_dssp HHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-HTSH---HHHHHHH-----------
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHh-HHhh---hhhhHHH-----------
Confidence 98888774322 234555555444 4567889999888877766665431 1000 0000000
Q ss_pred CCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHH
Q 000156 229 GTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308 (2015)
Q Consensus 229 ~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~ 308 (2015)
.-+...+.+.+|+.|..+++.
T Consensus 227 -----------------------------------------------------------~~l~~~~~~~~~~~~~~~~~~ 247 (861)
T d2bpta1 227 -----------------------------------------------------------QVVCEATQAEDIEVQAAAFGC 247 (861)
T ss_dssp -----------------------------------------------------------HHHHHHHTCSCHHHHHHHHHH
T ss_pred -----------------------------------------------------------HhHHHHhcCCCHHHHHHHHHH
Confidence 112233455667788888888
Q ss_pred HHHHhc-CCCCCCCChHHHHHH-HHHHhcccCHHHHHHHHHHHHHHHHHhhh-----------------cchhhhHhHHH
Q 000156 309 LTKLAS-TKRIAPGDFTEVCRT-LKKLITDVNIAVAVEAIQAIGNLARGLRT-----------------HFSGSSRFLLP 369 (2015)
Q Consensus 309 L~~l~~-~~ki~~~~y~~l~~~-L~k~l~D~N~~V~~~A~~~l~~La~~L~~-----------------~f~~~~~~llp 369 (2015)
+..++. .++.....+..++.. +.....+.+..++..++.++..++..... -..++...++|
T Consensus 248 l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 327 (861)
T d2bpta1 248 LCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVP 327 (861)
T ss_dssp HHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 888774 332222222333333 33445588888999998888887764321 01345667788
Q ss_pred HHHHHhccC-------cHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000156 370 VLLEKLKEK-------KPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (2015)
Q Consensus 370 ~LL~klkdk-------k~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (2015)
.+++.+.+. ...++.++..++..+... +..-+..+++.+...+.+.+|..|..++..+..+........+..
T Consensus 328 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~ 407 (861)
T d2bpta1 328 NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTY 407 (861)
T ss_dssp HHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHH
Confidence 888777543 346888888999988875 112234455556666778999999999999888777666666667
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHH-HHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCC
Q 000156 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE-RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSG 520 (2015)
Q Consensus 442 ~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~-~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~ 520 (2015)
+++.+++.+..++.|.++.||++|..+++.+...++..... .++..+ +....
T Consensus 408 ~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l-------l~~l~-------------------- 460 (861)
T d2bpta1 408 YVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV-------VQACL-------------------- 460 (861)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH-------HHHHH--------------------
T ss_pred HHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhh-------hHHHH--------------------
Confidence 88999999999999999999999999999988877643110 000000 00000
Q ss_pred CCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhc
Q 000156 521 GSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600 (2015)
Q Consensus 521 ~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ 600 (2015)
T Consensus 461 -------------------------------------------------------------------------------- 460 (861)
T d2bpta1 461 -------------------------------------------------------------------------------- 460 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcHHHHhhhccCCHHHHHHHHHHHHHHHHhcc-----ccchHH----HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHH
Q 000156 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-----NLDQSV----EILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 671 (2015)
Q Consensus 601 ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~-----~~~~~~----~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~ 671 (2015)
..+ +.+-+.+..+...+...+.... ...... ..++.... -.+.+..+...+++++..++
T Consensus 461 -------~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~al~~~i 528 (861)
T d2bpta1 461 -------IGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAAN----RIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp -------HHH-TSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHT----CSCCGGGHHHHHHHHHHHHH
T ss_pred -------hcc-ccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHH
Confidence 001 0111111122222222222210 011111 22222221 13445567788888888888
Q ss_pred HHcCCCchhHHHHHHHHHHhhhcch-----------------hhhHHHHHHHHHHHhhhCh------hHHHHHHHHHhhh
Q 000156 672 ATATKFPKKCVVLCLLGISERVADI-----------------KTRAHAMKCLTTFSEAVGP------GFIFERLYKIMKD 728 (2015)
Q Consensus 672 ~~~~~~~~~~~~~il~~LveKlgD~-----------------K~r~~a~~~L~~l~e~~~~------~~Vl~~L~~~l~~ 728 (2015)
...+.-....+..+++.+.+.+... .++..+..++..+.+..+. +.+++.++..+..
T Consensus 529 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 608 (861)
T d2bpta1 529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK 608 (861)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhccc
Confidence 8766544344444444444433221 1223334445555554332 2345555555555
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHH
Q 000156 729 HKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807 (2015)
Q Consensus 729 ~KnpKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~ 807 (2015)
..++.++..++..++.++..+|....+ +..+++.+... +.+.++.||..|..+++.+.+..|..+.+|+.++-+.++.
T Consensus 609 ~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~-l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~ 687 (861)
T d2bpta1 609 KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKA-LNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQ 687 (861)
T ss_dssp TTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH-HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH-hCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHH
Confidence 667888999999999999888754222 35678888886 9999999999999999999999999888887665554444
Q ss_pred HHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Q 000156 808 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887 (2015)
Q Consensus 808 ~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~ 887 (2015)
.+... +.++.+|..++..+..++...+..
T Consensus 688 ~l~~~---------------------------------------------------~~~~~~k~~~~~~l~~i~~~~~~~ 716 (861)
T d2bpta1 688 MISNP---------------------------------------------------NARRELKPAVLSVFGDIASNIGAD 716 (861)
T ss_dssp HHHCT---------------------------------------------------TCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred HhCCC---------------------------------------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33211 012346677888888888755445
Q ss_pred CCCCChhhHHHHHHhcccc----c-------hHHHHHHHHHHHHHHHHHhChh---hHHhhhHHHHHHHHHhCCC----c
Q 000156 888 IQPAGTGELFGGLRGRLYD----S-------NKNLVMATLITLGAVASAMGPA---VEKSSKGVLSDILKCLGDN----K 949 (2015)
Q Consensus 888 I~~~~~~eL~~~L~~rL~D----s-------N~~V~~~Al~~l~~La~alg~~---f~~~~~~llp~ll~~L~D~----k 949 (2015)
+.|. +.++++.+.+.+.. . ...|+..++.++..+..+++.. +.+|+..+++.+...+.|. .
T Consensus 717 ~~~~-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~ 795 (861)
T d2bpta1 717 FIPY-LNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSE 795 (861)
T ss_dssp GHHH-HHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTS
T ss_pred HHHH-HHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCC
Confidence 5554 36666666654422 1 2346778888888888877543 6788888887777777764 4
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 000156 950 KHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 950 ~~Vr~aa~~aL~~i~~~~g 968 (2015)
..++.++..+++.++..+|
T Consensus 796 ~~~~~~~~~~i~~l~~~~~ 814 (861)
T d2bpta1 796 DATSRAAVGLIGDIAAMFP 814 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHCc
Confidence 5678888999999998886
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1e-15 Score=209.33 Aligned_cols=724 Identities=14% Similarity=0.115 Sum_probs=430.4
Q ss_pred hhcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchh-----hhhhHHH
Q 000156 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADAD-----AGRYAKE 93 (2015)
Q Consensus 19 rl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~-----~~~~~~~ 93 (2015)
-+.+.+-+.|..+..-+...+.... + ..|.++.+.+...+.+.|..+++.++.+|...++..... .......
T Consensus 96 ~l~~~~~~vr~~~~~~i~~i~~~~~-~--~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ 172 (888)
T d1qbkb_ 96 NIGDSSPLIRATVGILITTIASKGE-L--QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNI 172 (888)
T ss_dssp GGGCCCSSTTTTTTTTTHHHHTTTS-S--CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhC-c--cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHH
Confidence 3444444555555554444443211 1 124445566667778888888899999888776543221 1122345
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhh------hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcC-h
Q 000156 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELE------AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-P 166 (2015)
Q Consensus 94 v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~------~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~-~ 166 (2015)
+++.++.-.-...+.+|..|..++..++... ..+.+++.+.....+.+++++..++.+|..++..+..+..+ +
T Consensus 173 ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l 252 (888)
T d1qbkb_ 173 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM 252 (888)
T ss_dssp TTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTT
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7777776533356778888888877665431 12445566666778889999999999998887766654433 4
Q ss_pred hHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHh-CCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhh
Q 000156 167 KRILKMLPELFDHQDQNVRASSKGLTLELCRWI-GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKEL 245 (2015)
Q Consensus 167 k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~l-G~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~ 245 (2015)
..+++.+...+.+.|..||-+|..++..+...- ....+.+.+ ..+-|.. ........ ..... .
T Consensus 253 ~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l-~~l~~~l-----------~~~~~~~~---~~~~~-~ 316 (888)
T d1qbkb_ 253 HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL-PKLIPVL-----------VNGMKYSD---IDIIL-L 316 (888)
T ss_dssp TTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTST-TTTTTTT-----------TTSSCCSS---TTHHH-H
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHH-----------HHHhhcch---HHHHH-H
Confidence 567788888889999999999877643322110 000010100 1110000 00000000 00000 0
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCCCCCCC-------CCcccccccCcc--hhhhhhhccCChHHHHHHHHHHHHHhcCC
Q 000156 246 GQELISEDVGPGPSEESTADVPPEIDEYEL-------VDPVDILTPLEK--SGFWEGVKATKWSERKDAVAELTKLASTK 316 (2015)
Q Consensus 246 ~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl-------~~~vdIl~kl~~--~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ 316 (2015)
. .....+ ....+..+++.++-. ....+....... .++.+......|..|+.+...|..++...
T Consensus 317 ~----~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~ 388 (888)
T d1qbkb_ 317 K----GDVEED----ETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY 388 (888)
T ss_dssp T----TTSSCC----TTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTC
T ss_pred h----hhhhhh----hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhh
Confidence 0 000000 000000111111000 000000001110 11122234477999999888776665321
Q ss_pred CCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000156 317 RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (2015)
Q Consensus 317 ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (2015)
...-+..++..+...+.+.+..++..|+.+++.++.+....+.++...++|.++..+.|.++.||.++..+|..+...
T Consensus 389 --~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 466 (888)
T d1qbkb_ 389 --RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 466 (888)
T ss_dssp --CSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHH
T ss_pred --HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 123356788888889999999999999999999999988889999999999999999999999999999999877654
Q ss_pred c-CC----ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000156 397 G-CL----NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (2015)
Q Consensus 397 ~-~~----~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~ 471 (2015)
. .. .+..+++.++..+.+.++.|+..++..|..+.+.... .+.++++.+++.+..++.+....++..+.+++++
T Consensus 467 ~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~ 545 (888)
T d1qbkb_ 467 VVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT-ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGT 545 (888)
T ss_dssp HHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTT-SSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1 11 2456888889999999999999999999988876554 3567889999999999999999999999999999
Q ss_pred HHHHhCchHH-HHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCC
Q 000156 472 IAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550 (2015)
Q Consensus 472 l~~~~Ge~~~-~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~ 550 (2015)
+...+|+... ..+++.+-+ .+.+.....
T Consensus 546 l~~~~~~~~~~~~~~~~l~~----~l~~~~~~~----------------------------------------------- 574 (888)
T d1qbkb_ 546 LADSVGHHLNKPEYIQMLMP----PLIQKWNML----------------------------------------------- 574 (888)
T ss_dssp HHHHHGGGGCSHHHHHHHHH----HHHHHHTTS-----------------------------------------------
T ss_pred HHHhhhccccchHHHHHHHH----HHHHHHHhc-----------------------------------------------
Confidence 9988876421 122222211 111111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHH
Q 000156 551 APASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 630 (2015)
Q Consensus 551 ~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~ 630 (2015)
.+. .. . +...++.+
T Consensus 575 ---------------------------~~~-----~~--~---------------------------~~~~le~l----- 588 (888)
T d1qbkb_ 575 ---------------------------KDE-----DK--D---------------------------LFPLLECL----- 588 (888)
T ss_dssp ---------------------------CTT-----CT--T---------------------------HHHHHHHH-----
T ss_pred ---------------------------ccc-----hH--H---------------------------HHHHHHHH-----
Confidence 000 00 0 00001100
Q ss_pred hccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Q 000156 631 AVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFS 710 (2015)
Q Consensus 631 ~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~ 710 (2015)
..++..+.. ++..-...+.+..+.++ ...+..
T Consensus 589 ---------~~i~~~~~~--~~~~~~~~~~~~~~~~l----------------------~~~l~~--------------- 620 (888)
T d1qbkb_ 589 ---------SSVATALQS--GFLPYCEPVYQRCVNLV----------------------QKTLAQ--------------- 620 (888)
T ss_dssp ---------HHHHHHSTT--TTHHHHHHHHHHHHHHH----------------------HHHHHH---------------
T ss_pred ---------HHHHHHhHH--HHhhhHHHHHHHHHHHH----------------------HHHHHH---------------
Confidence 111111110 01000001111111111 000000
Q ss_pred hhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000156 711 EAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2015)
Q Consensus 711 e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~---~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (2015)
.+...................++..++.+++.+|....+ ...+++.+..+ +.+.++.||..|..+++.|.
T Consensus 621 ------~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~-l~~~~~~vr~~a~~llgdl~ 693 (888)
T d1qbkb_ 621 ------AMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC-MQDKMPEVRQSSFALLGDLT 693 (888)
T ss_dssp ------HHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHH-HTCSSHHHHHHHHHHHHHHH
T ss_pred ------HHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHH-hCCCChHHHHHHHHHHHHHH
Confidence 000000000011223334555566667777766653211 12366667776 99999999999999999999
Q ss_pred HHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCCh
Q 000156 788 KFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDW 867 (2015)
Q Consensus 788 ~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~W 867 (2015)
...++.+.+|+.++-|. ++..+.+..+
T Consensus 694 ~~~~~~~~~~l~~~~~~-----------------------------------------------------l~~~L~~~~~ 720 (888)
T d1qbkb_ 694 KACFQHVKPCIADFMPI-----------------------------------------------------LGTNLNPEFI 720 (888)
T ss_dssp HHCGGGTGGGHHHHHHH-----------------------------------------------------HHHTCCGGGH
T ss_pred HhhhHHHHHHHHHHHHH-----------------------------------------------------HHHHhCcCCH
Confidence 99998877776554333 3344455566
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc--chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh
Q 000156 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (2015)
Q Consensus 868 k~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~D--sN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L 945 (2015)
.+|..|+..++.|+...+..+.|.. ..++..|...+++ .+..|...++.++|.|+...+..+.+|+..+++.++..|
T Consensus 721 ~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l 799 (888)
T d1qbkb_ 721 SVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSL 799 (888)
T ss_dssp HHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHh
Confidence 7888999999999886666777774 8899999999965 456799999999999999998889999999999999999
Q ss_pred CCC-cHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhc-CCCChhHHHHHHHHHH
Q 000156 946 GDN-KKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTD-AKLGAEGRKDLFDWLS 998 (2015)
Q Consensus 946 ~D~-k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~-~k~~p~~R~~~l~~L~ 998 (2015)
.+. ...-++.+..++..++..-+ +..-++.+..++.+ .+..++++....+.|.
T Consensus 800 ~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~ 856 (888)
T d1qbkb_ 800 RNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILH 856 (888)
T ss_dssp TTSCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 763 23346777888888887532 23334444555432 2123555555555444
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.2e-11 Score=163.80 Aligned_cols=750 Identities=13% Similarity=0.108 Sum_probs=422.5
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCc--HHHHHHHHHHHHHHHHHhch----h---
Q 000156 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSN--APVQDKALDALIAYLKAADA----D--- 86 (2015)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN--~~vqe~~leal~~~l~~~~~----~--- 86 (2015)
+.+...|.|=..|.+|-+.|.+.... +.|.| ...+...+.|.+ ..+...|.-.|-.++..... .
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~f---~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~ 78 (876)
T d1qgra_ 6 ILEKTVSPDRLELEAAQKFLERAAVE----NLPTF---LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (876)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHhc----ChhHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhc
Confidence 45667788999999999999877643 12333 444455554443 34555555555555532111 0
Q ss_pred ----hh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHH
Q 000156 87 ----AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQA 155 (2015)
Q Consensus 87 ----~~-~~~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~L~~~ 155 (2015)
.. .....+-..++. ++.+....+..+.+++..++..+-+ ..+++.|...+.+. ++.++.+++.+|..+
T Consensus 79 ~~~~i~~~~k~~ik~~ll~-~l~~~~~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i 157 (876)
T d1qgra_ 79 RWLAIDANARREVKNYVLH-TLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHHTSCHHHHHHHHHHHHH-HTTTCCSSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 00 112223333443 3443233344455555556555432 25778887776544 467888999999999
Q ss_pred HHHhCCCCc--ChhHHHhhhhhhhcCC--ChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000156 156 LSEFGAKII--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (2015)
Q Consensus 156 l~~fG~~~i--~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (2015)
+.+++...+ ....+++.+...+.+. +..||..+...+..+..++.. .. . .......+
T Consensus 158 ~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~-----~~-~--~~~~~~~i----------- 218 (876)
T d1qgra_ 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA-----NF-D--KESERHFI----------- 218 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH-----HH-T--SHHHHHHH-----------
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh-----hh-h--HHHHHHHH-----------
Confidence 888765432 2345777777777544 467888776665544433321 00 0 00000000
Q ss_pred CCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHH
Q 000156 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK 311 (2015)
Q Consensus 232 ~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~ 311 (2015)
. ..+...+.+.+|+.|..+++.|..
T Consensus 219 ------------------------------------------------------~-~~l~~~~~~~~~~v~~~~~~~l~~ 243 (876)
T d1qgra_ 219 ------------------------------------------------------M-QVVCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp ------------------------------------------------------H-HHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------H-HHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 112223445667788888888888
Q ss_pred Hhc-CCCCCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh--------------------c-chhhhHhHH
Q 000156 312 LAS-TKRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT--------------------H-FSGSSRFLL 368 (2015)
Q Consensus 312 l~~-~~ki~~~~y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~--------------------~-f~~~~~~ll 368 (2015)
+++ .+....... ..+...+...+.+.+..++..++..+..++..... . ...+...++
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (876)
T d1qgra_ 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (876)
T ss_dssp HHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 774 333221111 23455566666777778888888877777652210 0 123445556
Q ss_pred HHHHHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000156 369 PVLLEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (2015)
Q Consensus 369 p~LL~klkd-------kk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (2015)
|.+...+.. ....++.++..++..+... +..-++.+++.+...+.+.+|..|..++..+..+........+.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~ 403 (876)
T d1qgra_ 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 666655432 3335889999999988876 22234566777778888999999999988888776666666667
Q ss_pred HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHH-HHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCC
Q 000156 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE-RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519 (2015)
Q Consensus 441 ~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~-~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~ 519 (2015)
.++..+++.+...+.|.++.||.+|..+++.+...+++.... .++..+- ..+..
T Consensus 404 ~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~----~~l~~--------------------- 458 (876)
T d1qgra_ 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL----QCLIE--------------------- 458 (876)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHH----HHHHH---------------------
T ss_pred HHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHH----HHHHH---------------------
Confidence 788999999999999999999999999999998877643110 1111110 00111
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhh
Q 000156 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLG 599 (2015)
Q Consensus 520 ~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~ 599 (2015)
T Consensus 459 -------------------------------------------------------------------------------- 458 (876)
T d1qgra_ 459 -------------------------------------------------------------------------------- 458 (876)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhc---------------cccchHHH----HHHHHHhcCCCCcccHHHHH
Q 000156 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAV---------------QNLDQSVE----ILVRLVCMLPGWSEKNVQVQ 660 (2015)
Q Consensus 600 ~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~---------------~~~~~~~~----~Lv~~L~~~pg~~DsN~qV~ 660 (2015)
.+ +.+++.+..+...+..+.... .......+ .+...+.. ....+..+.
T Consensus 459 ---------~l-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~---~~~~~~~~~ 525 (876)
T d1qgra_ 459 ---------GL-SAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR---PDGHQNNLR 525 (876)
T ss_dssp ---------HT-TSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTS---CSSCSTTHH
T ss_pred ---------Hh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hccccHhHH
Confidence 11 111222222222222222110 00111122 22222211 112223355
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCCh----hHHH
Q 000156 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP----KVLS 736 (2015)
Q Consensus 661 ~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~Knp----Kv~~ 736 (2015)
..+++.+..++..........+..+++.+++.+... ..... ........ +.+.
T Consensus 526 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------l~~~~----------~~~~~~~~~~~~~~~~ 582 (876)
T d1qgra_ 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQV-------------LQMES----------HIQSTSDRIQFNDLQS 582 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHH-------------HTTTT----------SCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-------------HHHhh----------hhcchhhhHHHHHHHH
Confidence 666666666665443333333334444443332210 00000 00000000 1111
Q ss_pred HHHHHHHHHHHHhCCCCC--ChhhHHHHHHhcCCCC--CchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHH
Q 000156 737 EGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (2015)
Q Consensus 737 ~~l~~L~~li~~fG~~~l--~~k~li~~l~~~gL~~--sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (2015)
-.+.++..++...|.... ....+++.+... +.. .+..||..+..+++.+...+|..+.+|+..+.|.++..+..
T Consensus 583 ~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~-l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~- 660 (876)
T d1qgra_ 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN- 660 (876)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcchhhhhhhHHHHHHHHHHH-HhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhC-
Confidence 222233333333332111 123455555554 543 45679999999999999999998888877766665554433
Q ss_pred HhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC
Q 000156 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892 (2015)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~ 892 (2015)
..++.+|..|+..+..+.......+.|.
T Consensus 661 ---------------------------------------------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~- 688 (876)
T d1qgra_ 661 ---------------------------------------------------YAEYQVCLAAVGLVGDLCRALQSNIIPF- 688 (876)
T ss_dssp ---------------------------------------------------CTTHHHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred ---------------------------------------------------CCcHHHHHHHHHHHHHHHHHhHHhhhhh-
Confidence 1135678889988888887555566665
Q ss_pred hhhHHHHHHhccccch--HHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc-----------HHHHHHHHHH
Q 000156 893 TGELFGGLRGRLYDSN--KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTV 959 (2015)
Q Consensus 893 ~~eL~~~L~~rL~DsN--~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k-----------~~Vr~aa~~a 959 (2015)
..+++..|...++|.+ ..++..++.+++.++..+|..|.+|+..+++.+...+.... ..+|+++..|
T Consensus 689 ~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 768 (876)
T d1qgra_ 689 CDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEA 768 (876)
T ss_dssp HHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHH
Confidence 3788999999997754 67889999999999999999999999999999988776321 1357777777
Q ss_pred HHHHHHhcC------------chhhHHHHHHHH----hcCCCChhHHHHHHHHHHHHhccCCCC--CCh--hhhHHH-HH
Q 000156 960 LDAWLAAVH------------LDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSGF--PDA--AHLLKP-AS 1018 (2015)
Q Consensus 960 L~~i~~~~g------------l~~ll~~l~~~L----~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~--~~ll~p-l~ 1018 (2015)
...++..+. +...++.|...+ .+...+..++..+++.+.......+.. ..+ .+.+.. +.
T Consensus 769 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~ 848 (876)
T d1qgra_ 769 YTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLT 848 (876)
T ss_dssp HHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 777665431 122223333222 233334556666555555444434331 111 133444 44
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1019 IAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1019 ~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
.+..+.+...|..|.-+...+.+.
T Consensus 849 ~~~~s~~~~~~~~a~~~~~~~~~~ 872 (876)
T d1qgra_ 849 EGRRSKTNKAKTLARWATKELRKL 872 (876)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHh
Confidence 467788888898888776665443
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=5.8e-10 Score=149.70 Aligned_cols=639 Identities=14% Similarity=0.132 Sum_probs=360.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhh-cchhhhHhHHHHHHHHhc
Q 000156 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRT-HFSGSSRFLLPVLLEKLK 376 (2015)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~-~f~~~~~~llp~LL~klk 376 (2015)
..|+.+...+..++.. .+..+.+.++++.|...+. |.+..++..++.+++.+++.++. .+..+...+++.++..+.
T Consensus 104 ~~~~~~a~~i~~i~~~-~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~ 182 (876)
T d1qgra_ 104 YRPSSASQCVAGIACA-EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR 182 (876)
T ss_dssp SSSCHHHHHHHHHHHH-HGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH-HCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHc
Confidence 3455555666666532 1222446678888888775 66677888999999999998865 467899999999999985
Q ss_pred c--CcHHHHHHHHHHHHHHHHhc----CC-C-hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHH
Q 000156 377 E--KKPTVAESLTQTLQAMHKAG----CL-N-LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYV 447 (2015)
Q Consensus 377 d--kk~~V~~aa~~aL~al~~~~----~~-~-l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~ 447 (2015)
+ ....++.++..++..++... .. . ...+++.+...+++.++.+|..++..+..++...+.. +.+++ +.+.
T Consensus 183 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~~~~~l~ 261 (876)
T d1qgra_ 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY-METYMGPALF 261 (876)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG-CHHHHTTTHH
T ss_pred CcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHH
Confidence 4 45678888888887766440 00 0 1235666677788999999999999999988876543 33333 4577
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCC
Q 000156 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE 527 (2015)
Q Consensus 448 p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 527 (2015)
+.+..++.+.+.+++..+.+.+..+...... .... ..+...... ........ ...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~---------~~~~~~~~~--~~~~~~~~----------~~~ 316 (876)
T d1qgra_ 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMD----LAIE---------ASEAAEQGR--PPEHTSKF----------YAK 316 (876)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHSS--CCSSCCCC----------HHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHH----HHHH---------hhHHHHhhh--hHHHHHHH----------HHH
Confidence 7788889999999999888877665543221 1110 011111100 00000000 000
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHH----HHHhh----
Q 000156 528 ASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEI----ESRLG---- 599 (2015)
Q Consensus 528 ~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~----e~~~~---- 599 (2015)
.........-... ... .+ ++......+...+ -..+.
T Consensus 317 ~~~~~l~~~l~~~-~~~---------------------------------~~--~~~~~~~~~~~~~a~~~l~~l~~~~~ 360 (876)
T d1qgra_ 317 GALQYLVPILTQT-LTK---------------------------------QD--ENDDDDDWNPCKAAGVCLMLLATCCE 360 (876)
T ss_dssp HHHHHHHHHHHHH-TTC---------------------------------CC--SSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhhHHH-HHh---------------------------------cc--cccccccchHHHHHHHHHHHHHHHhh
Confidence 0000000000000 000 00 0000111111111 11111
Q ss_pred ----ccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHH
Q 000156 600 ----SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT 673 (2015)
Q Consensus 600 ----~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~--~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~ 673 (2015)
+.+-+-+.+.+.+.+|+.|.+++..+......... .......++..+. +.+.|.+..|...++.++..+++.
T Consensus 361 ~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~--~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI--ELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH--HHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH--HhhcCCccHHHHHHHHHHHHHHHH
Confidence 11224456788899999999999888766544221 1122223333332 246789999999999999999887
Q ss_pred cCC--CchhHHHHHHHHHHhhhcc-hhhhHHHHHHHHHHHhhhC--------------------hhHHHHHHHHHhh--h
Q 000156 674 ATK--FPKKCVVLCLLGISERVAD-IKTRAHAMKCLTTFSEAVG--------------------PGFIFERLYKIMK--D 728 (2015)
Q Consensus 674 ~~~--~~~~~~~~il~~LveKlgD-~K~r~~a~~~L~~l~e~~~--------------------~~~Vl~~L~~~l~--~ 728 (2015)
.+. .....+..+++.++..+.+ ++++..+..++..+++... .+.++..++..+. .
T Consensus 439 ~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~ 518 (876)
T d1qgra_ 439 LPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD 518 (876)
T ss_dssp CGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS
T ss_pred cchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 543 2234567788888888777 4577777777777766421 1123333333331 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCC-h----hhHHHHHHhcCCCC----CchhHHHHHHHHHHHHHHHhChhHHhhhh
Q 000156 729 HKNPKVLSEGILWMVSAVEDFGVSHLK-L----KDLIDFCKDTGLQS----SAAATRNATIKLLGALHKFVGPDIKGFLA 799 (2015)
Q Consensus 729 ~KnpKv~~~~l~~L~~li~~fG~~~l~-~----k~li~~l~~~gL~~----sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~ 799 (2015)
..+..++..++..+..++........+ + ..+++.+... +.. .+...+.....+.
T Consensus 519 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~---------------- 581 (876)
T d1qgra_ 519 GHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQV-LQMESHIQSTSDRIQFNDLQ---------------- 581 (876)
T ss_dssp SCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHH-HTTTTSCCSTTHHHHHHHHH----------------
T ss_pred cccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhcchhhhHHHHHHH----------------
Confidence 234556666776666666543322110 0 1122222111 110 0111111111111
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcC--CCChHHHHHHHHHH
Q 000156 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE--SPDWKVRLESIEAV 877 (2015)
Q Consensus 800 ~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~--d~~Wk~R~eale~L 877 (2015)
..+...+...+.+...+. . ..+...+.+.++..+. +.++.+|..++..+
T Consensus 582 ---~~l~~~l~~~~~~~~~~~-----------------------~---~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l 632 (876)
T d1qgra_ 582 ---SLLCATLQNVLRKVQHQD-----------------------A---LQISDVVMASLLRMFQSTAGSGGVQEDALMAV 632 (876)
T ss_dssp ---HHHHHHHHHHHTTSCHHH-----------------------H---HTTHHHHHHHHHHHC-----CCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcchhh-----------------------h---hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 111111111111110000 0 0001112222333222 23567788888899
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhccccc-hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc--HHHHH
Q 000156 878 NKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRE 954 (2015)
Q Consensus 878 ~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k--~~Vr~ 954 (2015)
..++...+..+.+. +..+++.|...+.+. +..++..|+.+++.++..++..+.+|+..+++.+++.+.+.. ..++.
T Consensus 633 ~~l~~~~~~~~~~~-l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~ 711 (876)
T d1qgra_ 633 STLVEVLGGEFLKY-MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKP 711 (876)
T ss_dssp HHHHHHHGGGGGGG-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHH
T ss_pred HHHHHHcchhhHHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHH
Confidence 88887544455554 478888888888665 467999999999999999999999999999999999998754 57999
Q ss_pred HHHHHHHHHHHhcC--chhhHHHHHHH----HhcC--CCC-------hhHHHHHHHHHHHHhccC---CC--CC---Chh
Q 000156 955 CTLTVLDAWLAAVH--LDKMVPYVTTA----LTDA--KLG-------AEGRKDLFDWLSKQLTGL---SG--FP---DAA 1011 (2015)
Q Consensus 955 aa~~aL~~i~~~~g--l~~ll~~l~~~----L~~~--k~~-------p~~R~~~l~~L~~~l~~~---~~--~~---~~~ 1011 (2015)
++..|++.++..+| ..++++.+.+. +... ..+ ..+|..++.-....+... .. .. .+.
T Consensus 712 ~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 791 (876)
T d1qgra_ 712 QILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQ 791 (876)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSG
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 99999999999887 23444444444 3311 001 123444444433333221 11 11 123
Q ss_pred hhHHHHHh---h---cCCCChHHHHHHHHHHHHHHHHcChhHHHH
Q 000156 1012 HLLKPASI---A---MTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (2015)
Q Consensus 1012 ~ll~pl~~---~---L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~ 1050 (2015)
..+.+++. . -.+.+.+|+..|..+++.+...+|.+....
T Consensus 792 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~ 836 (876)
T d1qgra_ 792 PRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKL 836 (876)
T ss_dssp GGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334332 2 267888999999999999999999876543
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=9.5e-08 Score=117.20 Aligned_cols=383 Identities=11% Similarity=0.056 Sum_probs=245.6
Q ss_pred HHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc----------
Q 000156 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---------- 674 (2015)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~---------- 674 (2015)
.+++++.|.|=..|.+|-+.|.++.....+ .....+...+.. .+....++..+.-+++..+...
T Consensus 4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~~~--~~~~~l~~il~~----~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~ 77 (458)
T d1ibrb_ 4 TILEKTVSPDRLELEAAQKFLERAAVENLP--TFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 77 (458)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcCch--HHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence 466788889999999999999988765211 123344444432 1112345555554444433211
Q ss_pred --CCCchhHHHHHHHHHHhhhcchh-hhHHHHHHHHHHHhhhChh----HHHHHHHHHhh-hCCChhHHHHHHHHHHHHH
Q 000156 675 --TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSEAVGPG----FIFERLYKIMK-DHKNPKVLSEGILWMVSAV 746 (2015)
Q Consensus 675 --~~~~~~~~~~il~~LveKlgD~K-~r~~a~~~L~~l~e~~~~~----~Vl~~L~~~l~-~~KnpKv~~~~l~~L~~li 746 (2015)
..+.......+...++.-+.+.. .+..+..++..++....+. .+++.++..+. ...++.++..++..+..+.
T Consensus 78 ~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 157 (458)
T d1ibrb_ 78 RWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 157 (458)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 12333344556666676666532 2223445566665543332 35666666553 2456778888899988888
Q ss_pred HHhCCCCCC--hhhHHHHHHhcCCC--CCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 000156 747 EDFGVSHLK--LKDLIDFCKDTGLQ--SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (2015)
Q Consensus 747 ~~fG~~~l~--~k~li~~l~~~gL~--~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p 822 (2015)
...+..... ...+++.+... +. +.+..||.+|+++++.+..+....... ....
T Consensus 158 ~~~~~~~~~~~~~~il~~~~~~-l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~--~~~~-------------------- 214 (458)
T d1ibrb_ 158 QDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDK--ESER-------------------- 214 (458)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS--HHHH--------------------
T ss_pred hhccchhhhhhHHHHHHHHHHH-hcccccCHHHHHHHHHHHHHHHHhhhhhhhh--HHHH--------------------
Confidence 766544332 34566666554 54 456789999999988776543321110 0000
Q ss_pred CCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000156 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2015)
Q Consensus 823 ~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~ 902 (2015)
..+.+.+...+.+.+|++|..+++.+..++......+.+....-+...+..
T Consensus 215 -----------------------------~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~ 265 (458)
T d1ibrb_ 215 -----------------------------HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 265 (458)
T ss_dssp -----------------------------HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred -----------------------------HHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 002233445567789999999999999999866556666643344555566
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhCh---------------------hhHHhhhHHHHHHHHHhC-------CCcHHHHH
Q 000156 903 RLYDSNKNLVMATLITLGAVASAMGP---------------------AVEKSSKGVLSDILKCLG-------DNKKHMRE 954 (2015)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~alg~---------------------~f~~~~~~llp~ll~~L~-------D~k~~Vr~ 954 (2015)
.+.+.+..++..|+..+..++..... ....+...++|.+...+. |....+|.
T Consensus 266 ~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 345 (458)
T d1ibrb_ 266 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 345 (458)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHH
Confidence 67888889999999999888753311 123455667777777664 33446999
Q ss_pred HHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChHH
Q 000156 955 CTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDV 1028 (2015)
Q Consensus 955 aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~~V 1028 (2015)
++..++..++..+| ++.+++.+...+.++ ++..|..++..|......... .+.+..+++.++.+++|+++.|
T Consensus 346 ~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~--~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~V 423 (458)
T d1ibrb_ 346 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 423 (458)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999887 344555666666665 578898888777765543322 2345677777999999999999
Q ss_pred HHHHHHHHHHHHHHcChhH
Q 000156 1029 RKAAEACIVEILRAGGQET 1047 (2015)
Q Consensus 1029 R~aA~~~L~~l~~~~G~~~ 1047 (2015)
|.+|..+++.+...++...
T Consensus 424 R~~a~~~l~~i~~~~~~~~ 442 (458)
T d1ibrb_ 424 RDTAAWTVGRICELLPEAA 442 (458)
T ss_dssp HHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 9999999999998887643
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=2.4e-07 Score=113.46 Aligned_cols=382 Identities=13% Similarity=0.087 Sum_probs=240.0
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCc--HHHHHHHHHHHHHHHHHhchh-------
Q 000156 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSN--APVQDKALDALIAYLKAADAD------- 86 (2015)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN--~~vqe~~leal~~~l~~~~~~------- 86 (2015)
+.+.+.+.|=..|.+|-+.|.+.+.. +.|.| ...+...+.|.| ..+...|.-.+..++......
T Consensus 5 il~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~---~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~ 77 (458)
T d1ibrb_ 5 ILEKTVSPDRLELEAAQKFLERAAVE----NLPTF---LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 77 (458)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHhc----CchHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence 56778888999999999999887754 22344 333344444433 445555555555454332110
Q ss_pred ----hh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhc--CChhhHHHHHHHHHHH
Q 000156 87 ----AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKN--KVAKAVVPAIDVMFQA 155 (2015)
Q Consensus 87 ----~~-~~~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~--KnpKv~~~~l~~L~~~ 155 (2015)
.. .....+...+++-.....+..+ .+..++..++..+.+ ..+++.|...+.+ .++..+..++.++..+
T Consensus 78 ~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 156 (458)
T d1ibrb_ 78 RWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 156 (458)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 00 1123455555554222222223 333444444443322 2567777776654 4567778888888888
Q ss_pred HHHhCCCCc--ChhHHHhhhhhhhcC--CChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000156 156 LSEFGAKII--PPKRILKMLPELFDH--QDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (2015)
Q Consensus 156 l~~fG~~~i--~~k~il~~l~~ll~~--~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (2015)
....+.... ....+++.+...+.+ .+..||..|...+..++.+.... . . .......+
T Consensus 157 ~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~-----~-~--~~~~~~~~----------- 217 (458)
T d1ibrb_ 157 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-----F-D--KESERHFI----------- 217 (458)
T ss_dssp HHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH-----H-T--SHHHHHHH-----------
T ss_pred HhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh-----h-h--hHHHHHHh-----------
Confidence 776665433 245688888888865 45678988877766655443210 0 0 00000000
Q ss_pred CCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHH
Q 000156 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK 311 (2015)
Q Consensus 232 ~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~ 311 (2015)
. ..+...+.+.+|+.|..+++.|..
T Consensus 218 ------------------------------------------------------~-~~l~~~~~~~~~~~~~~~~~~l~~ 242 (458)
T d1ibrb_ 218 ------------------------------------------------------M-QVVCEATQCPDTRVRVAALQNLVK 242 (458)
T ss_dssp ------------------------------------------------------H-HHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------H-hhHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 122233455678888999999988
Q ss_pred Hhc-CCCCCCCChHH-HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc---------------------chhhhHhHH
Q 000156 312 LAS-TKRIAPGDFTE-VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH---------------------FSGSSRFLL 368 (2015)
Q Consensus 312 l~~-~~ki~~~~y~~-l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~---------------------f~~~~~~ll 368 (2015)
++. .++.....+.+ +...+...+.+.+..++..|+.++..++...... +..+...++
T Consensus 243 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (458)
T d1ibrb_ 243 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 322 (458)
T ss_dssp HHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 874 44333222222 3344455566778888999999998887643211 123455666
Q ss_pred HHHHHHhc-------cCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000156 369 PVLLEKLK-------EKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (2015)
Q Consensus 369 p~LL~klk-------dkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (2015)
|.+.+.+. +....++.++..++..++.. +...++.+++.+...+++.+|.+|.+++..|..+.+.+.+..+.
T Consensus 323 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~ 402 (458)
T d1ibrb_ 323 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 402 (458)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTC
T ss_pred hhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHH
Confidence 76666653 33345899999999999876 22235667788888889999999999999888776655444455
Q ss_pred HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 441 ~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
.+++.++|.+..+++|+++.||.+|..|++.+...+++.
T Consensus 403 ~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~ 441 (458)
T d1ibrb_ 403 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441 (458)
T ss_dssp TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 678999999999999999999999999999999998764
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=1.4e-05 Score=97.36 Aligned_cols=374 Identities=11% Similarity=0.104 Sum_probs=224.7
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhcccc--ch-----HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--DQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~--~~-----~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (2015)
+++++.|.|.|-..+..|+..+.+.+...... +. ....|+++|. +..+..|+..++.+|..++.....
T Consensus 16 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~~v~~~a~~~L~~la~~~~~ 90 (434)
T d1q1sc_ 16 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 90 (434)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTT-----CGGGHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHc-----cCCCHHHHHHHHHHHHHHhcCChh
Confidence 56778999999999999999999887542221 11 1234455442 234567888888888887742111
Q ss_pred CchhHH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhC--hh-----HHHHHHHHHhhhCCChhH----HHHHHHHH
Q 000156 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PG-----FIFERLYKIMKDHKNPKV----LSEGILWM 742 (2015)
Q Consensus 677 ~~~~~~-~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~--~~-----~Vl~~L~~~l~~~KnpKv----~~~~l~~L 742 (2015)
.....+ ..+++.++..+.+ ..++..|..+|..++.... -. ..+..++..+........ ...++..+
T Consensus 91 ~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l 170 (434)
T d1q1sc_ 91 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 170 (434)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred hhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHH
Confidence 111111 2357777777765 4678888888888875321 11 123344444322222221 12222223
Q ss_pred HHHHHHhCCC-CC-ChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000156 743 VSAVEDFGVS-HL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (2015)
Q Consensus 743 ~~li~~fG~~-~l-~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~ 820 (2015)
+.+....... .. ....+++.+..+ +.+.++.+|..|..++..|...... .. ..+ ..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~~-~~-----------~~~----~~----- 228 (434)
T d1q1sc_ 171 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNE-RI-----------EMV----VK----- 228 (434)
T ss_dssp HHHTCCCTTCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSCHH-HH-----------HHH----HT-----
T ss_pred HHHhhcccccchhhhhhhHHHHHHHH-HhccccchhhhHHhhhcccchhhhh-hH-----------HHH----hh-----
Confidence 3222111110 11 134577888787 9999999999998888766422110 00 000 00
Q ss_pred CCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHH
Q 000156 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 899 (2015)
Q Consensus 821 ~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~~ 899 (2015)
..+.+.+++.+.+.++..+..++..+..++... ....... -..++..
T Consensus 229 -------------------------------~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~-~~~~~~~~~~~~~~~ 276 (434)
T d1q1sc_ 229 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 276 (434)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------cccchhcccccccchhhhhhchhhhhhhHHhhh-hHHHHHHHhccccch
Confidence 002346777788889999999999988876421 1111100 0234566
Q ss_pred HHhccccchHHHHHHHHHHHHHHHHHhChhhHH-hh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch-------
Q 000156 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD------- 970 (2015)
Q Consensus 900 L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~-~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~------- 970 (2015)
|...+.+.+..|+..|+.++..++..- .+... .. ..++|.++..+.+....++..|..++..+....+.+
T Consensus 277 l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~ 355 (434)
T d1q1sc_ 277 FPSLLTNPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355 (434)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHhhcccchhhhHHHHHHHhhhcccc-chhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 777888899999999999999887532 22222 22 347899999999999999999999999988776532
Q ss_pred -hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhc---cCCCCCChhhh------HHHHHhhcCCCChHHHHHHHHHHHHH
Q 000156 971 -KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT---GLSGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 971 -~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~---~~~~~~~~~~l------l~pl~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
.+++.+...|.+. ++..+..++..+...+. ..+....+... +..|-...++.+.+||+.|.+.+..+
T Consensus 356 ~~~i~~L~~ll~~~--d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 356 CGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp TTCHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2366777878755 57778777766655443 22221112111 22233345889999999998887543
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=0.00061 Score=85.07 Aligned_cols=477 Identities=14% Similarity=0.086 Sum_probs=257.2
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhcchhhhHhHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHhcCCCh-
Q 000156 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKAGCLNL- 401 (2015)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~~~~~~llp~LL~klkd-kk~~V~~aa~~aL~al~~~~~~~l- 401 (2015)
.++.|.+.++|.+..++..|+.++..|+.. .+..+-. ...+++.|+..+.. ....+++.+..+|..+..+ ....
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~-~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~~~ 95 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR-SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLL 95 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHT-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHH-hhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHH
Confidence 367788888888889999999999999852 2222211 24578999998865 4577898888899887643 1111
Q ss_pred ----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000156 402 ----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 402 ----~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G 477 (2015)
...++.|+..|++.++.++..++..|..+........-.-.-...+|.++..+.+.+++++..+..++..+.. +
T Consensus 96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~ 173 (529)
T d1jdha_ 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--G 173 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--T
T ss_pred HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhh--h
Confidence 1346888888999999999999999988765544321111124468899999999999999999999987753 2
Q ss_pred chHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 000156 478 MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 557 (2015)
Q Consensus 478 e~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~ 557 (2015)
+.... ..+.+ .. +.
T Consensus 174 ~~~~~-----------~~~~~---~~-~~--------------------------------------------------- 187 (529)
T d1jdha_ 174 NQESK-----------LIILA---SG-GP--------------------------------------------------- 187 (529)
T ss_dssp CHHHH-----------HHHHH---TT-HH---------------------------------------------------
T ss_pred hhHHH-----------HHHHh---cc-cc---------------------------------------------------
Confidence 22110 01100 00 00
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhc-cCCHHHHHHHHHHHHHHHHhcccc-
Q 000156 558 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK-SAVWKERLEAISSLRQQVEAVQNL- 635 (2015)
Q Consensus 558 ~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~-s~~Wk~Rl~a~e~L~~~v~~~~~~- 635 (2015)
+.++..|. +.....+..+...+..........
T Consensus 188 ----------------------------------------------~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~ 221 (529)
T d1jdha_ 188 ----------------------------------------------QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221 (529)
T ss_dssp ----------------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHH
T ss_pred ----------------------------------------------hHHHHHHHhhhhHHHHHHHHHHHhhhhccccccc
Confidence 00001111 111122222222222111000000
Q ss_pred ----chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhc--chhhhHHHHHHHHHH
Q 000156 636 ----DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA--DIKTRAHAMKCLTTF 709 (2015)
Q Consensus 636 ----~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg--D~K~r~~a~~~L~~l 709 (2015)
....+.+++ .+.+.+..+...++.++..+....... .....+++.|+.-+. |..++..+..+|..+
T Consensus 222 ~~~~~g~~~~L~~------ll~~~~~~~~~~a~~~l~~ls~~~~~~--~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l 293 (529)
T d1jdha_ 222 AIVEAGGMQALGL------HLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293 (529)
T ss_dssp HHHHTTHHHHHHT------TTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHH------HhcccchhhhhhhhhHHHhccccccch--hhhhhcchhhhhhcccccHHHHHHHHHHHHhh
Confidence 001122222 244556667777777776665432211 122345667776554 456777777777776
Q ss_pred HhhhCh-------hHHHHHHHHHhh-hCCChhHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCC-chhH
Q 000156 710 SEAVGP-------GFIFERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSS-AAAT 775 (2015)
Q Consensus 710 ~e~~~~-------~~Vl~~L~~~l~-~~KnpKv~~~~l~~L~~li~~fG~~~-----l~~k~li~~l~~~gL~~s-n~~V 775 (2015)
+..... .-.+..++..+. ...++.++..++..|..+........ +.....++.+..+ +.+. +..+
T Consensus 294 ~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~l-l~~~~~~~~ 372 (529)
T d1jdha_ 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPL 372 (529)
T ss_dssp TTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT-TSTTCCHHH
T ss_pred ccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHH-HhccchHHH
Confidence 532111 112344444442 35677888888877776652111100 0001123444454 6544 4567
Q ss_pred HHHHHHHHHHHHHHhChhHHhhh--hhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccc
Q 000156 776 RNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGK 853 (2015)
Q Consensus 776 R~aA~~ll~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~ 853 (2015)
+.++..++..+... +.....+ .+..|.+.+.+......+.....-. ......+..
T Consensus 373 ~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~--------------------~~~~~~~~~- 429 (529)
T d1jdha_ 373 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG--------------------GTQQQFVEG- 429 (529)
T ss_dssp HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-------------------------------CBTT-
T ss_pred HHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhh--------------------hhhHHhhcc-
Confidence 88888888777543 2222222 3455666776665443322110000 000000000
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
+. .+..+..+...+..+..+...+..-. -...++.|...|.+.+..++..|+.++..|+. .++....
T Consensus 430 ~~----------~~~~~~~~~~al~~la~~~~~r~~~~-~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~ 496 (529)
T d1jdha_ 430 VR----------MEEIVEGCTGALHILARDVHNRIVIR-GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEA 496 (529)
T ss_dssp BC----------HHHHHHHHHHHHHHHTTSHHHHHHHH-HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SHHHHHH
T ss_pred cc----------hHHHHHHHHHHHHHHccCHHHHHHHH-HCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc--ChhhHHH
Confidence 00 12222233333333221110000000 12346778888888889999999999888763 2332222
Q ss_pred --hhHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000156 934 --SKGVLSDILKCLGDNKKHMRECTLTVLDAW 963 (2015)
Q Consensus 934 --~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i 963 (2015)
....++.+.+.+.++++.||..|..+|..+
T Consensus 497 i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 497 IEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 223678899999999999999999988764
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.17 E-value=0.00012 Score=88.59 Aligned_cols=380 Identities=12% Similarity=0.075 Sum_probs=234.6
Q ss_pred CChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHh--hhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhhhh
Q 000156 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRE--LGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRY 90 (2015)
Q Consensus 14 lpl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~--~~~~~~k~v~D-sN~~vqe~~leal~~~l~~~~~~~~~~ 90 (2015)
-++...+.|.+-..+.+|...+.+.+....++.-..+.+ ..+.+-+++.+ .|+.+|..++.+|..+...... ....
T Consensus 16 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~-~~~~ 94 (434)
T d1q1sc_ 16 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE-QTKA 94 (434)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHH-HHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChh-hhhH
Confidence 456788999999999999999998875422211112332 23444566654 5788999999998877543222 1122
Q ss_pred --HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-h-h-----hhHHHHHHHHhhcCChh-h----HHHHHHHHHHHH
Q 000156 91 --AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-A-V-----DVFLDVMEKAIKNKVAK-A----VVPAIDVMFQAL 156 (2015)
Q Consensus 91 --~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~-~-~-----~~v~~~L~~~~~~KnpK-v----~~~~l~~L~~~l 156 (2015)
-..+++.++.-.-+..+..++.|..++..++.-. . . ...++.|+..+.+.+.. . +..+...+..+.
T Consensus 95 i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 174 (434)
T d1q1sc_ 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 174 (434)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHT
T ss_pred hhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHh
Confidence 2346777887633357889999988887776421 1 1 23345566655544322 1 222222233222
Q ss_pred HHhCCCCc---ChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCC
Q 000156 157 SEFGAKII---PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARP 233 (2015)
Q Consensus 157 ~~fG~~~i---~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P 233 (2015)
.. ..... ....+++.+..++.+.|..||..+...+..+... .. .....+ .
T Consensus 175 ~~-~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~--~~------------~~~~~~----~-------- 227 (434)
T d1q1sc_ 175 RN-KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PN------------ERIEMV----V-------- 227 (434)
T ss_dssp CC-CTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CH------------HHHHHH----H--------
T ss_pred hc-ccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh--hh------------hhHHHH----h--------
Confidence 11 11111 2356889999999999999998887665544211 10 000000 0
Q ss_pred CccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHh
Q 000156 234 TRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA 313 (2015)
Q Consensus 234 ~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~ 313 (2015)
. . + + + +.+.+.+.+.++..+..++..|..++
T Consensus 228 ------------------~-~--~-----------------------~---~--~~Lv~ll~~~~~~~~~~al~~l~~l~ 258 (434)
T d1q1sc_ 228 ------------------K-K--G-----------------------V---V--PQLVKLLGATELPIVTPALRAIGNIV 258 (434)
T ss_dssp ------------------T-T--T-----------------------C---H--HHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred ------------------h-c--c-----------------------c---c--hhcccccccchhhhhhchhhhhhhHH
Confidence 0 0 0 0 1 24555567778888888888888876
Q ss_pred cCC-CCCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccCcHHHHHHHHHHH
Q 000156 314 STK-RIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTL 390 (2015)
Q Consensus 314 ~~~-ki~~~~y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~V~~aa~~aL 390 (2015)
.+. .....-+ ..++..|...+.+.+..|...|+.++..|+..-....... -..++|.++..+.+....++..+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l 338 (434)
T d1q1sc_ 259 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI 338 (434)
T ss_dssp TSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHH
Confidence 421 1000000 1234456777888888999999999999986432222211 234789999999999999999999999
Q ss_pred HHHHHhcCCChH--------hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc---C-hhHHHHhhh--hHHHHHHHHhcC
Q 000156 391 QAMHKAGCLNLV--------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS---S-KAAVLKVHK--DYVPICMECLND 456 (2015)
Q Consensus 391 ~al~~~~~~~l~--------~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~---~-~~~l~~~l~--~l~p~l~k~L~D 456 (2015)
..+..+ .+.+ .+++.+...++.+++.++..++..|..++... + ...+...+. .+++.+-.+.++
T Consensus 339 ~nl~~~--~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~ 416 (434)
T d1q1sc_ 339 TNYTSG--GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH 416 (434)
T ss_dssp HHHHHH--SCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTC
T ss_pred HHHHhc--CCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcC
Confidence 988876 2221 23677888899999999999999888877532 1 111221221 245566677789
Q ss_pred CCHHHHHHHHHHHHHH
Q 000156 457 GTPEVRDAAFSVLAAI 472 (2015)
Q Consensus 457 s~~~VR~aA~~al~~l 472 (2015)
.+++||+.|.+.+..+
T Consensus 417 ~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 417 ENESVYKASLNLIEKY 432 (434)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998887654
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.08 E-value=0.00033 Score=86.99 Aligned_cols=379 Identities=10% Similarity=0.068 Sum_probs=240.6
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHh--hhhhhHhhhc-CCcHHHHHHHHHHHHHHHHHhchhhhhh--H
Q 000156 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRE--LGPLFKKTVA-DSNAPVQDKALDALIAYLKAADADAGRY--A 91 (2015)
Q Consensus 17 ~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~--~~~~~~k~v~-DsN~~vqe~~leal~~~l~~~~~~~~~~--~ 91 (2015)
...+.+.+-..++.|...+.+.+.....+.-..+.+ ..+.+-.++. +.|..+|..++.+|..+...... .... -
T Consensus 82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~-~~~~~~~ 160 (503)
T d1wa5b_ 82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVVD 160 (503)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHh
Confidence 455677788889999999988774322211111211 2333445554 77889999999888776543221 1111 1
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-h-h-----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC-
Q 000156 92 KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-A-V-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI- 163 (2015)
Q Consensus 92 ~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~-~-~-----~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~- 163 (2015)
..+++.++...-+....+++.|..++..++.-. . . ..+++.|...+.+.++.++..++.+|..+........
T Consensus 161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~ 240 (503)
T d1wa5b_ 161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 240 (503)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchH
Confidence 235666666643467889999988888776431 1 1 2345667778888999998888888887765433311
Q ss_pred -cChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhh
Q 000156 164 -IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (2015)
Q Consensus 164 -i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (2015)
.....+++.+..++.+.|..++..+...+..+..+-. ... ..+ ++
T Consensus 241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~-----~~~---------~~~---~~----------------- 286 (503)
T d1wa5b_ 241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-----EAI---------QAV---ID----------------- 286 (503)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-----HHH---------HHH---HH-----------------
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCc-----hhh---------hhh---hh-----------------
Confidence 1245689999999999999998887666544432110 000 000 00
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCC-
Q 000156 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG- 321 (2015)
Q Consensus 243 ~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~- 321 (2015)
.+ +. +.+...+.+.++..+..++..|..++.+..-...
T Consensus 287 -----------~~-----------------------------~~-~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~ 325 (503)
T d1wa5b_ 287 -----------VR-----------------------------IP-KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQV 325 (503)
T ss_dssp -----------TT-----------------------------CH-HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred -----------hh-----------------------------hh-hhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHh
Confidence 00 01 2355556777888888888888887743211000
Q ss_pred -ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC
Q 000156 322 -DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (2015)
Q Consensus 322 -~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~ 399 (2015)
--..+++.|...+.+.+..++..++.+|..++.+-....... -..++|.++..+......|+..+..++..+..+++.
T Consensus 326 ~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~ 405 (503)
T d1wa5b_ 326 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ 405 (503)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT
T ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccc
Confidence 012356778888888888999999999999875432221111 246889999999999999999999999988876211
Q ss_pred C---h-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh---------hHHHHhhh--hHHHHHHHHhcCCCHH
Q 000156 400 N---L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK---------AAVLKVHK--DYVPICMECLNDGTPE 460 (2015)
Q Consensus 400 ~---l-----~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~---------~~l~~~l~--~l~p~l~k~L~Ds~~~ 460 (2015)
. . ..+++.++..|+.+++.+...++..|..++..... ..+...+. ..+..+-.+.++.+.+
T Consensus 406 ~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~ 485 (503)
T d1wa5b_ 406 RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDK 485 (503)
T ss_dssp CTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHH
T ss_pred cHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 1 1 12456678888899999999999998887753211 00101111 1344466667889999
Q ss_pred HHHHHHHHHHH
Q 000156 461 VRDAAFSVLAA 471 (2015)
Q Consensus 461 VR~aA~~al~~ 471 (2015)
|++.|.+.+..
T Consensus 486 i~~~A~~il~~ 496 (503)
T d1wa5b_ 486 IYEKAYKIIET 496 (503)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888876643
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.03 E-value=0.00044 Score=85.88 Aligned_cols=373 Identities=13% Similarity=0.128 Sum_probs=233.0
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC-h--HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD-F--TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~-y--~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (2015)
.+...+.+.+-..+..|+..++++++...-.+-+ + ..+++.|...+. +.+..+...|+.+|..|+.+-.......
T Consensus 80 ~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~ 159 (503)
T d1wa5b_ 80 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVV 159 (503)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5777788899999999999999987532222211 1 234667777787 7788899999999999986543222222
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000156 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2015)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2015)
-..++|.++..+.+....+++.+..+|..++.. +... ..+++.++..+.+.++.++..++..|..+.......
T Consensus 160 ~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~-~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~ 238 (503)
T d1wa5b_ 160 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 238 (503)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred hCCChHHHHHHhcCCChhHHHHHHHHHHHHhhh-hHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccc
Confidence 235788999999999999999999999988754 1111 124567778888888999988887777765433221
Q ss_pred HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000156 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517 (2015)
Q Consensus 438 ~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~ 517 (2015)
.-......++|.+.+++...+++++..+..++..+.. +... .+...++.
T Consensus 239 ~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~--~~~~--------------~~~~~~~~--------------- 287 (503)
T d1wa5b_ 239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD--GPQE--------------AIQAVIDV--------------- 287 (503)
T ss_dssp CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS--SCHH--------------HHHHHHHT---------------
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcc--CCch--------------hhhhhhhh---------------
Confidence 1112346789999999999999999988877765542 1110 01111100
Q ss_pred CCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHH
Q 000156 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR 597 (2015)
Q Consensus 518 ~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~ 597 (2015)
T Consensus 288 -------------------------------------------------------------------------------- 287 (503)
T d1wa5b_ 288 -------------------------------------------------------------------------------- 287 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccch------HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHH
Q 000156 598 LGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ------SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 671 (2015)
Q Consensus 598 ~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~------~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~ 671 (2015)
-+.+.++..+.+.++..+..++..+..+....+.... ..+.+..+ +...+..+...++-++..++
T Consensus 288 ---~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~l------l~~~~~~i~~~~~~~l~nl~ 358 (503)
T d1wa5b_ 288 ---RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL------LSSPKENIKKEACWTISNIT 358 (503)
T ss_dssp ---TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH------TTCSCHHHHHHHHHHHHHHT
T ss_pred ---hhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHH------hcCCCHHHHHHHHHHHHHHh
Confidence 0113455667777888888888877766543221110 11222222 34455667777777777665
Q ss_pred HHcCCCchhHH-HHHHHHHHhhhc--chhhhHHHHHHHHHHHhhhC--hh---H-----HHHHHHHHhhhCCChhHHHHH
Q 000156 672 ATATKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVG--PG---F-----IFERLYKIMKDHKNPKVLSEG 738 (2015)
Q Consensus 672 ~~~~~~~~~~~-~~il~~LveKlg--D~K~r~~a~~~L~~l~e~~~--~~---~-----Vl~~L~~~l~~~KnpKv~~~~ 738 (2015)
...+....... ..+++.+++.+. +.+++..|..+|..++.... .+ + ++..++..+ +.+++++...+
T Consensus 359 ~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L-~~~d~~~~~~~ 437 (503)
T d1wa5b_ 359 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVT 437 (503)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT-TTCCHHHHHHH
T ss_pred hccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHh-cCCCHHHHHHH
Confidence 32111111111 234566666654 35788888888888876432 11 1 234445554 67889999999
Q ss_pred HHHHHHHHHH-------hCCCCCC-hh------hHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 000156 739 ILWMVSAVED-------FGVSHLK-LK------DLIDFCKDTGLQSSAAATRNATIKLLGA 785 (2015)
Q Consensus 739 l~~L~~li~~-------fG~~~l~-~k------~li~~l~~~gL~~sn~~VR~aA~~ll~~ 785 (2015)
|..|..++.- .+.. .+ .. ..++.+..+ ..|.|..|++.|..++-.
T Consensus 438 L~~l~~ll~~~~~~~~~~~~~-~~~~~~~iee~g~~~~i~~L-q~~~~~~i~~~A~~il~~ 496 (503)
T d1wa5b_ 438 LDALENILKMGEADKEARGLN-INENADFIEKAGGMEKIFNC-QQNENDKIYEKAYKIIET 496 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS-SCHHHHHHHHTTHHHHHHGG-GGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccc-chHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHH
Confidence 9998887741 1111 11 11 234445556 678899999999887643
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=0.00033 Score=79.00 Aligned_cols=247 Identities=12% Similarity=0.044 Sum_probs=150.3
Q ss_pred HHHhhhcc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHH-HH
Q 000156 688 GISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF-CK 764 (2015)
Q Consensus 688 ~LveKlgD--~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~-l~ 764 (2015)
.|++-|.| +.+|..|..+|..+. .+.+++.++..+ +++++.||..++..|..+ +...-.....+.. +.
T Consensus 23 ~L~~~L~d~~~~vR~~A~~~L~~~~----~~~~~~~l~~~l-~d~~~~vr~~a~~aL~~l----~~~~~~~~~~~~~l~~ 93 (276)
T d1oyza_ 23 ELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEFC-SDKNYIRRDIGAFILGQI----KICKKCEDNVFNILNN 93 (276)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHS----CCCTTTHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhC----CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----ccccccccchHHHHHH
Confidence 34444444 467877777776553 344566666654 677888888877776543 3211111222332 23
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCC
Q 000156 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844 (2015)
Q Consensus 765 ~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~ 844 (2015)
.+ +.+.++.||.+|...++.++......
T Consensus 94 ~~-l~d~~~~vr~~a~~aL~~~~~~~~~~--------------------------------------------------- 121 (276)
T d1oyza_ 94 MA-LNDKSACVRATAIESTAQRCKKNPIY--------------------------------------------------- 121 (276)
T ss_dssp HH-HHCSCHHHHHHHHHHHHHHHHHCGGG---------------------------------------------------
T ss_pred HH-hcCCChhHHHHHHHHHHHHccccchh---------------------------------------------------
Confidence 34 67788888888888877665322100
Q ss_pred CCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 000156 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS 924 (2015)
Q Consensus 845 lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~ 924 (2015)
...+.+.+...+.|.+|.+|..++..+..+-. ...+..+...+.+.+..+...+...++.+..
T Consensus 122 ------~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 184 (276)
T d1oyza_ 122 ------SPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKY 184 (276)
T ss_dssp ------HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC
T ss_pred ------hHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-----------HHHHHHHHHhcccccchhhhhHHHHHHhhhc
Confidence 00122345555677788888887766553221 2234555666677777777766655443221
Q ss_pred HhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccC
Q 000156 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (2015)
Q Consensus 925 alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~ 1004 (2015)
....+.+.++..+.+....++..+..++.. .+....++.+...+.++ .+|..++..|.+. .
T Consensus 185 --------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~----~~~~~~~~~L~~~l~d~----~vr~~a~~aL~~i-g-- 245 (276)
T d1oyza_ 185 --------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSY----RKDKRVLSVLCDELKKN----TVYDDIIEAAGEL-G-- 245 (276)
T ss_dssp --------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH----TTCGGGHHHHHHHHTSS----SCCHHHHHHHHHH-C--
T ss_pred --------cccccchhhhhhhhhhhhhhhhhhccccch----hhhhhhHHHHHHHhCCh----HHHHHHHHHHHHc-C--
Confidence 123456677888889999999988777654 46677888888888754 4677777777643 2
Q ss_pred CCCCChhhhHHHHHhhcC-CCChHHHHHHHHHH
Q 000156 1005 SGFPDAAHLLKPASIAMT-DKSSDVRKAAEACI 1036 (2015)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~-D~~~~VR~aA~~~L 1036 (2015)
....++.+...|. +.+.+||.+|...|
T Consensus 246 -----~~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 246 -----DKTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp -----CGGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 1334555666664 46789999888776
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=0.00044 Score=77.97 Aligned_cols=222 Identities=14% Similarity=0.154 Sum_probs=150.9
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhh
Q 000156 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 799 (2015)
Q Consensus 720 ~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~ 799 (2015)
+.|++.+ ++.+|.||..++..|.. +|. ...++.+..+ +.++++.||..|...|+.+....+ .
T Consensus 22 ~~L~~~L-~d~~~~vR~~A~~~L~~----~~~-----~~~~~~l~~~-l~d~~~~vr~~a~~aL~~l~~~~~--~----- 83 (276)
T d1oyza_ 22 DELFRLL-DDHNSLKRISSARVLQL----RGG-----QDAVRLAIEF-CSDKNYIRRDIGAFILGQIKICKK--C----- 83 (276)
T ss_dssp HHHHHHT-TCSSHHHHHHHHHHHHH----HCC-----HHHHHHHHHH-HTCSSHHHHHHHHHHHHHSCCCTT--T-----
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHh----hCC-----HhHHHHHHHH-HcCCCHHHHHHHHHHHHHhccccc--c-----
Confidence 4455554 79999999999987754 453 3567777777 899999999999888765421000 0
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHH-HhcCCCChHHHHHHHHHHH
Q 000156 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV-KSLESPDWKVRLESIEAVN 878 (2015)
Q Consensus 800 ~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll-~~l~d~~Wk~R~eale~L~ 878 (2015)
. ..+.+.++ ..+.|.+|.+|..++..+.
T Consensus 84 --~-------------------------------------------------~~~~~~l~~~~l~d~~~~vr~~a~~aL~ 112 (276)
T d1oyza_ 84 --E-------------------------------------------------DNVFNILNNMALNDKSACVRATAIESTA 112 (276)
T ss_dssp --H-------------------------------------------------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred --c-------------------------------------------------cchHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 0 00111122 2357889999999999999
Q ss_pred HHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHH
Q 000156 879 KILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLT 958 (2015)
Q Consensus 879 ~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~ 958 (2015)
.+.... +.....++..|...+.|.+..|+..++.+++.+.. ...++.++..+.+....++..+..
T Consensus 113 ~~~~~~-----~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~----------~~~~~~l~~l~~~~~~~~~~~~~~ 177 (276)
T d1oyza_ 113 QRCKKN-----PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAF 177 (276)
T ss_dssp HHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHcccc-----chhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch----------HHHHHHHHHhcccccchhhhhHHH
Confidence 887632 11235678888888999999999888877664331 234567788889999999988876
Q ss_pred HHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHH
Q 000156 959 VLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1038 (2015)
Q Consensus 959 aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~ 1038 (2015)
++..+ ..+.....+.+...+.+. +..+|..+..-+... .....+++|+.++.|. +||..+..+|+.
T Consensus 178 ~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~al~~~--------~~~~~~~~L~~~l~d~--~vr~~a~~aL~~ 243 (276)
T d1oyza_ 178 AININ--KYDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYR--------KDKRVLSVLCDELKKN--TVYDDIIEAAGE 243 (276)
T ss_dssp HHHHH--TCCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHT--------TCGGGHHHHHHHHTSS--SCCHHHHHHHHH
T ss_pred HHHhh--hccccccchhhhhhhhhh--hhhhhhhhccccchh--------hhhhhHHHHHHHhCCh--HHHHHHHHHHHH
Confidence 66543 334455666677777665 467777766665431 1244567788888874 599999988876
Q ss_pred H
Q 000156 1039 I 1039 (2015)
Q Consensus 1039 l 1039 (2015)
+
T Consensus 244 i 244 (276)
T d1oyza_ 244 L 244 (276)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.002 Score=80.18 Aligned_cols=184 Identities=8% Similarity=0.003 Sum_probs=128.0
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhH
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~--~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (2015)
.+.+.+.+.+=..|..|+..|..++....... ...++++..|.+.+. ..+..+...|+.+|..|+..-...-.-.-.
T Consensus 21 ~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 100 (529)
T d1jdha_ 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS 100 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHC
Confidence 57777888998999999999999874321100 123567888888887 456788899999998887422111011112
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000156 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2015)
..+|.|+..+++....++..+..+|..++.. .... ...++.+...+++.++.++..++..|..+.........
T Consensus 101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 179 (529)
T d1jdha_ 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcc-cchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHH
Confidence 5689999999999999999999999988765 2221 23578888889999999999999988876543221111
Q ss_pred HHhhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Q 000156 440 LKVHKDYVPICMECLN-DGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 440 ~~~l~~l~p~l~k~L~-Ds~~~VR~aA~~al~~l~ 473 (2015)
.-.-...++.++.++. .....++..+..++..+.
T Consensus 180 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls 214 (529)
T d1jdha_ 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred HHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 1112335677777774 455688888888887654
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=5.4e-05 Score=86.31 Aligned_cols=185 Identities=12% Similarity=0.084 Sum_probs=132.0
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcch-hhhHh
Q 000156 290 FWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRF 366 (2015)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~--~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~ 366 (2015)
.-....+.++.+|..|++.|..++....... ...+.+...|...+.+.+..|+..|+.+|+.++..-...-. -.-..
T Consensus 22 ~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~ 101 (264)
T d1xqra1 22 AGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG 101 (264)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344567888999999999999874311000 01233444455667788999999999999999964322111 11246
Q ss_pred HHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCC-h-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000156 367 LLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2015)
Q Consensus 367 llp~LL~klk-dkk~~V~~aa~~aL~al~~~~~~~-l-----~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2015)
.+|.|+..+. +....++..+..||..++.+ ... . ...++.+...+++.++.++..++..|..++...+...
T Consensus 102 ~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~- 179 (264)
T d1xqra1 102 ALRKLLRLLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK- 179 (264)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH-
T ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHhcc-chhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHH-
Confidence 7899999884 67788999999999999865 111 1 2246788888999999999999999988776544321
Q ss_pred HHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000156 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (2015)
Q Consensus 440 ~~~l-~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~ 476 (2015)
.... ...+|.++..+.+.+++||..|..+|+.+....
T Consensus 180 ~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 180 GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 1112 347899999999999999999999998886443
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.40 E-value=0.12 Score=68.21 Aligned_cols=268 Identities=10% Similarity=0.097 Sum_probs=152.5
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhh----hhccHHHH
Q 000156 731 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL----ADVKPALL 806 (2015)
Q Consensus 731 npKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L----~~lkp~ll 806 (2015)
.+-+|..++..+++....... -....+++.+... +.++++.||..|..++..+...........+ +.+.|.+.
T Consensus 471 ~~~lr~~~~~~i~~~~~~~~~--~~~~~~~~~l~~~-L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (959)
T d1wa5c_ 471 HIILRVDAIKYIYTFRNQLTK--AQLIELMPILATF-LQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (959)
T ss_dssp CHHHHHHHHHHHHHTGGGSCH--HHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred hHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence 455676666666554432211 1245677888887 9999999999999988777544332110000 01111111
Q ss_pred HHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCC--ChHH---HHHHHHHHHHHH
Q 000156 807 SALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP--DWKV---RLESIEAVNKIL 881 (2015)
Q Consensus 807 ~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~--~Wk~---R~eale~L~~ll 881 (2015)
..++ .++..+.+. .... +...++.+..++
T Consensus 548 ~ll~----------------------------------------------~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii 581 (959)
T d1wa5c_ 548 ILLK----------------------------------------------NLIALILKHGSSPEKLAENEFLMRSIFRVL 581 (959)
T ss_dssp HHHH----------------------------------------------HHHHHHHTTCCCHHHHTSCHHHHHHHHHHH
T ss_pred HHHH----------------------------------------------HHHHHHHhhcchhhhHHHHHHHHHHHHHHH
Confidence 1111 111111111 1111 123566777777
Q ss_pred HhccccCCCCChhhHHHHHHhcc-----ccchHHHHHHHHHHHHHHHHHhChh-hHHhhhHHHHHHHHHhCCCcHHHHHH
Q 000156 882 EEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNKKHMREC 955 (2015)
Q Consensus 882 ~~a~~~I~~~~~~eL~~~L~~rL-----~DsN~~V~~~Al~~l~~La~alg~~-f~~~~~~llp~ll~~L~D~k~~Vr~a 955 (2015)
......+.|. ...++..|...+ ++.+.......+++++.+....++. +..+...++|.+...+..........
T Consensus 582 ~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~ 660 (959)
T d1wa5c_ 582 QTSEDSIQPL-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPY 660 (959)
T ss_dssp HHHTTTTGGG-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 6555566665 366666665544 3456778888999999999888765 56778889999999888777777888
Q ss_pred HHHHHHHHHHhcC-----chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC-CCChhhhHHHHHhhcCCCChHHH
Q 000156 956 TLTVLDAWLAAVH-----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAMTDKSSDVR 1029 (2015)
Q Consensus 956 a~~aL~~i~~~~g-----l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~~~~~~ll~pl~~~L~D~~~~VR 1029 (2015)
+...+..+....+ +..+++.+........ ...-..+...+..++...+. ......++..+..++.+... +
T Consensus 661 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~ 736 (959)
T d1wa5c_ 661 VFQIIAFVVEQSATIPESIKPLAQPLLAPNVWEL--KGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY--E 736 (959)
T ss_dssp HHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCC--TTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT--H
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHH--hhhHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHHCCCcc--h
Confidence 8888888887764 2333443332221111 12223333333332221111 12234455556667765443 4
Q ss_pred HHHHHHHHHHHHHcChhHHHHHh
Q 000156 1030 KAAEACIVEILRAGGQETIEKNL 1052 (2015)
Q Consensus 1030 ~aA~~~L~~l~~~~G~~~~~~~l 1052 (2015)
..+...+..+...++.+.+.+++
T Consensus 737 ~~~~~ll~~ii~~~~~~~~~~~l 759 (959)
T d1wa5c_ 737 VHGFDLLEHIMLLIDMNRLRPYI 759 (959)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGH
T ss_pred HHHHHHHHHHHHHCchhhhHhHH
Confidence 67888888888888876655554
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=0.56 Score=61.38 Aligned_cols=128 Identities=9% Similarity=0.109 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHh-hhc-----chhhh-HhHHH
Q 000156 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGL-RTH-----FSGSS-RFLLP 369 (2015)
Q Consensus 299 WkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L-~~~-----f~~~~-~~llp 369 (2015)
=+.|++|=+.|..+-+.| + ....|...+. +....++..|+..++...+.- +.. +.+.. ..+-.
T Consensus 17 ~~~~k~Ae~~L~~~~~~p----~----f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~ 88 (959)
T d1wa5c_ 17 ASTAKTSERNLRQLETQD----G----FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK 88 (959)
T ss_dssp GGGHHHHHHHHHHHHTST----T----HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCC----C----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHH
Confidence 347999999998887655 2 3333444454 334568888888888776642 221 22222 22334
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000156 370 VLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (2015)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~ 434 (2015)
.++..+.+....+|..+..++..++.+ .....+++++.+...+++.++..+..++..|..+++..
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~ 154 (959)
T d1wa5c_ 89 EIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (959)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 556666678888999999999999876 23456789999999999999999999999998888654
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.27 E-value=2e-05 Score=77.48 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=84.4
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh
Q 000156 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413 (2015)
Q Consensus 334 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~ 413 (2015)
|+|.|..|+..|+.+|+.+ + ...++.|++.+.+....||..+..+|..+ .-...++.+...++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~-------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~------~~~~~~~~L~~~l~ 63 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----G-------DEAFEPLLESLSNEDWRIRGAAAWIIGNF------QDERAVEPLIKLLE 63 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----S-------STTHHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh----C-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhc------chhhhHHHHHhhhc
Confidence 3566767777776666543 1 13467888999999999999887777533 23567888999999
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000156 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLA 470 (2015)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~ 470 (2015)
+.+|.||..++..|..+ +. +...+.|.++++|.++.||.+|..+|.
T Consensus 64 d~~~~VR~~a~~aL~~i----~~-------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 64 DDSGFVRSGAARSLEQI----GG-------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HCCTHHHHHHHHHHHHH----CS-------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred cchhHHHHHHHHHHHHh----Cc-------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999988764 11 455788899999999999999999875
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.05 E-value=9.5e-05 Score=72.40 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=85.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC
Q 000156 904 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA 983 (2015)
Q Consensus 904 L~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~ 983 (2015)
|+|.|..|+..|+..++.+ |+ ..++.++..|.|.+..||..|..+|.. .+-...+|.+...|.++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~~-------~~~~~L~~~l~d~~~~vR~~a~~~L~~----~~~~~~~~~L~~~l~d~ 65 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----GD-------EAFEPLLESLSNEDWRIRGAAAWIIGN----FQDERAVEPLIKLLEDD 65 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----SS-------TTHHHHHHGGGCSCHHHHHHHHHHHGG----GCSHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHh----CH-------HHHHHHHHHHcCCCHHHHHHHHHHHHh----cchhhhHHHHHhhhccc
Confidence 5788888888888776643 32 235778899999999999999988864 34566788899999987
Q ss_pred CCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000156 984 KLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2015)
Q Consensus 984 k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~ 1037 (2015)
++.+|..++..|.+. . ....++.|...++|.+++||.+|..+|.
T Consensus 66 --~~~VR~~a~~aL~~i-~-------~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 66 --SGFVRSGAARSLEQI-G-------GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp --CTHHHHHHHHHHHHH-C-------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --hhHHHHHHHHHHHHh-C-------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 689999999988753 1 1445666888999999999999988774
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.00046 Score=78.29 Aligned_cols=174 Identities=11% Similarity=0.102 Sum_probs=120.7
Q ss_pred CChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHH
Q 000156 865 PDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDI 941 (2015)
Q Consensus 865 ~~Wk~R~eale~L~~ll~~a~--~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~-~~~llp~l 941 (2015)
.++..|..|++.|..++.... ..+. . .|-+...+...+++.+..|+..|+.+|+.++..-...-... -...+|.+
T Consensus 29 ~~~~~~~~Al~~L~~L~~~~d~a~~l~-~-~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 29 ADQQEREGALELLADLCENMDNAADFC-Q-LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHH-H-TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHH-H-cCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 357889999999999985321 1111 1 24455555667888999999999999999995332111112 23578999
Q ss_pred HHHhC-CCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC-Ch--
Q 000156 942 LKCLG-DNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DA-- 1010 (2015)
Q Consensus 942 l~~L~-D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~-~~-- 1010 (2015)
+..+. +....+|..+..+|..++.... -...++.+...|.+. ++.++..++..+...+...+... .+
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 184 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCS 184 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC--chHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99985 6778899999999999886543 123467788888866 57788877777765554332211 11
Q ss_pred hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1011 ~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
...++.++..|.+.+++||..|..+|..+...
T Consensus 185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 22456688889999999999999999877643
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.12 Score=60.35 Aligned_cols=387 Identities=9% Similarity=0.009 Sum_probs=189.0
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHH--HHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhCh
Q 000156 640 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV--LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP 715 (2015)
Q Consensus 640 ~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~--~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~ 715 (2015)
..++.+| +.+|..|+..+..+|..+...... .+..+. -.+|.|+.-+.+ .++|..|..+|..++...+.
T Consensus 5 p~lv~~L------~~~~~~~~~~a~~~l~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~ 77 (457)
T d1xm9a1 5 PKAVQYL------SSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp HHHHHHH------HSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHh------CCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 4566665 355677888888888887643222 222222 247888887765 46898999899888742211
Q ss_pred --hH-----HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCCh-hhHHHHHHhc--------------CCCCCch
Q 000156 716 --GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL-KDLIDFCKDT--------------GLQSSAA 773 (2015)
Q Consensus 716 --~~-----Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~-k~li~~l~~~--------------gL~~sn~ 773 (2015)
.. .+..++..+....++.++..++..|..+........... ..+...+..+ .....++
T Consensus 78 ~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (457)
T d1xm9a1 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence 11 255666666667889999999988888765332211000 1111111110 0345577
Q ss_pred hHHHHHHHHHHHHHHHhChhHHhhh--hhccHHHHHHHHHHHhcCCCCCCCCCc--ccccCcccc-CCCCCCCCCCCCCc
Q 000156 774 ATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPK--KTVRASEST-SSVSSGGSDGLPRE 848 (2015)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p~p~--R~~r~~~~~-~s~~~~~~d~lprv 848 (2015)
.|+..+..++..+...... ..... .++.+.+...+.....+.......... ......... ..........+...
T Consensus 158 ~v~~~a~~~l~~~~~~~~~-~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (457)
T d1xm9a1 158 EVFFNATGCLRNLSSADAG-RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHTTSHHH-HHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCchH-HHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Confidence 8888888777665432111 11111 345567777777665554321100000 000000000 00000000000000
Q ss_pred ccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC-----ChhhHHHHHHhccc-cchHHHHHHHHHHHHHH
Q 000156 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-----GTGELFGGLRGRLY-DSNKNLVMATLITLGAV 922 (2015)
Q Consensus 849 dIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~-----~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~~L 922 (2015)
.............+....-..+.. .....+. .....+. .....+..|...+. ..+..+...++..+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l 311 (457)
T d1xm9a1 237 ARNAYTEKSSTGCFSNKSDKMMNN---NYDCPLP--EEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL 311 (457)
T ss_dssp C-------------------------------CC--CCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHhhhhhhhhhHHHHHH---HHhhhhH--HhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 000000000000000000000000 0000000 0000011 01345555555553 33555666666666665
Q ss_pred HHHhChhhHHh------hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-----hhhHHHHHHHHhcC----CCCh
Q 000156 923 ASAMGPAVEKS------SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-----DKMVPYVTTALTDA----KLGA 987 (2015)
Q Consensus 923 a~alg~~f~~~------~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl-----~~ll~~l~~~L~~~----k~~p 987 (2015)
+.......... -...+|.++..+.+....++.++..++..+...... +..++.+...|... ..++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~ 391 (457)
T d1xm9a1 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSE 391 (457)
T ss_dssp TTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHH
T ss_pred hhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcH
Confidence 53322211111 124689999999999999999999999988754432 23445566666421 1135
Q ss_pred hHHHHHHHHHHHHhccCCCC-CCh--hhhHHHHHhhc-CCCChHHHHHHHHHHHHH
Q 000156 988 EGRKDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAM-TDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~-~~~--~~ll~pl~~~L-~D~~~~VR~aA~~~L~~l 1039 (2015)
+++..++..|.......+.. ..+ ...+++|+..+ .+.+..|+++|..+|..+
T Consensus 392 ~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L 447 (457)
T d1xm9a1 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 67888888888665433211 011 23567788876 456789999999888765
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.12 Score=60.39 Aligned_cols=391 Identities=11% Similarity=0.002 Sum_probs=187.5
Q ss_pred hhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh--HHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--hh--
Q 000156 55 PLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VD-- 127 (2015)
Q Consensus 55 ~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~--~~~v~~~LieK~l~-~k~~~k~~a~~~ll~~~E~~~--~~-- 127 (2015)
+.+-+++.++|+.+|..|..+|..+...... ..+. ....+|.|++- +. ..+.+|..|..++..++.-.. ..
T Consensus 5 p~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~-~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDL-LRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCcHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456788999999999999999888643322 2222 23467888865 65 689999999988887773211 11
Q ss_pred ---hHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhh----------------hhhhcCCChhHHHH
Q 000156 128 ---VFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKML----------------PELFDHQDQNVRAS 187 (2015)
Q Consensus 128 ---~v~~~L~~~~~-~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l----------------~~ll~~~d~~VR~~ 187 (2015)
..++.|...+. ..++.++..++.+|..+.............-++.+ .....+.+..|+..
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 162 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence 23455666554 57788888888888877654332111111111111 11235567888888
Q ss_pred HHHHHHHHHHHhCCchhhHHHh--hhChHHHHHHHHHHHHhcCCCCCCCcc-chhhhhHhhhhhccccCCCCCCCCCCCC
Q 000156 188 SKGLTLELCRWIGKDPVKTILF--EKMRDTMKKELEVELVNVSGTARPTRK-IRAEQDKELGQELISEDVGPGPSEESTA 264 (2015)
Q Consensus 188 a~~l~~ely~~lG~~~l~~~l~--~~Lk~~q~keLe~~f~k~~~~~~P~R~-~rs~~~~~~~~ea~~~~~~~~~~~~~~~ 264 (2015)
+...+..+...-. -+.... ..+-+..+.-+................ ........................
T Consensus 163 a~~~l~~~~~~~~---~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---- 235 (457)
T d1xm9a1 163 ATGCLRNLSSADA---GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY---- 235 (457)
T ss_dssp HHHHHHHHTTSHH---HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH----
T ss_pred HHHHHHHHhcCch---HHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh----
Confidence 7776655432211 111111 112233333333333322111000000 000000000000000000000000
Q ss_pred CCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhc---CCCCCC-CChHHHHHHHHHHhc-ccCH
Q 000156 265 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS---TKRIAP-GDFTEVCRTLKKLIT-DVNI 339 (2015)
Q Consensus 265 ~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~---~~ki~~-~~y~~l~~~L~k~l~-D~N~ 339 (2015)
...+......... .+ ....-..+..... ..+.. .+.... .....+++.|...+. ..+.
T Consensus 236 ---~~~~~~~~~~~~~--------~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 298 (457)
T d1xm9a1 236 ---NARNAYTEKSSTG--------CF----SNKSDKMMNNNYD--CPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298 (457)
T ss_dssp ---TC------------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred ---hhhhhhhHHHhhh--------hh----hhhhHHHHHHHHh--hhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccch
Confidence 0000000000000 00 0000000000000 00000 000000 011234455555544 4455
Q ss_pred HHHHHHHHHHHHHHHHhhhcch------hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh----HhHHHHHH
Q 000156 340 AVAVEAIQAIGNLARGLRTHFS------GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL----VDVVEDVK 409 (2015)
Q Consensus 340 ~V~~~A~~~l~~La~~L~~~f~------~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l----~~il~~l~ 409 (2015)
.+...++.++..++........ -.-...+|.|++.+++....|+.++..++..+..+ ...- ...++.++
T Consensus 299 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~-~~~~~~i~~~~i~~li 377 (457)
T d1xm9a1 299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGNQVFPEVT 377 (457)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC-hhHHHHHHHhhHHHHH
Confidence 5555666666666532221111 11234689999999999999999999999988754 1111 12345566
Q ss_pred HHhh------cCChHHHHHHHHHHHHHHHhcChhHHHHhhh-hHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 000156 410 TSVK------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECLND-GTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 410 ~~L~------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~-~l~p~l~k~L~D-s~~~VR~aA~~al~~l~ 473 (2015)
..+. ..++.++..++.+|..+....+.. -..... ..++.|+..+.+ .++.|+++|..+|..++
T Consensus 378 ~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~ 448 (457)
T d1xm9a1 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 6554 234679999999999877544322 111222 356788887754 57899999999998774
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=93.96 E-value=0.015 Score=64.02 Aligned_cols=114 Identities=15% Similarity=0.100 Sum_probs=73.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
.+...+.|.+|.+|..+.+.+ . ...|...++|.+..|+..+.. .++.
T Consensus 118 ~L~~Ll~D~d~~VR~~aa~~~-----------~-------~~~L~~L~~D~d~~VR~~aA~-------~~~~-------- 164 (233)
T d1lrva_ 118 QLEQMAADRDYLVRAYVVQRI-----------P-------PGRLFRFMRDEDRQVRKLVAK-------RLPE-------- 164 (233)
T ss_dssp GGGGGTTCSSHHHHHHHHHHS-----------C-------GGGGGGTTTCSCHHHHHHHHH-------HSCG--------
T ss_pred HHHHHhcCCCHHHHHHHHhcc-----------c-------hhHHHHHhcCCCHHHHHHHHH-------hcCH--------
Confidence 344567888999998876431 1 122345568888888876553 3332
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHH
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (2015)
+.++..++|....||..+...| +. +.+...+.++ ++.+|..+...+ ...
T Consensus 165 --~~L~~l~~D~d~~VR~~aa~~L-------~~----~~L~~l~~D~--d~~VR~aaae~~----------------~~~ 213 (233)
T d1lrva_ 165 --ESLGLMTQDPEPEVRRIVASRL-------RG----DDLLELLHDP--DWTVRLAAVEHA----------------SLE 213 (233)
T ss_dssp --GGGGGSTTCSSHHHHHHHHHHC-------CG----GGGGGGGGCS--SHHHHHHHHHHS----------------CHH
T ss_pred --HHHHHHccCCCHHHHHHHHHhc-------Cc----HHHHHHHhCC--CHHHHHHHHHhc----------------cHH
Confidence 3456677899999998876543 32 2334455565 578888776321 123
Q ss_pred HHhhcCCCChHHHHHHHH
Q 000156 1017 ASIAMTDKSSDVRKAAEA 1034 (2015)
Q Consensus 1017 l~~~L~D~~~~VR~aA~~ 1034 (2015)
++..|.|.+++||.+|.+
T Consensus 214 ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 214 ALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHHCCCCCHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHH
Confidence 567789999999998864
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=0.43 Score=48.23 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=82.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+.+.||. ++-.+..+++. .+..-.+.+.+|+++|...|.+++..||.++..+++.+|+.|... .+.|+.
T Consensus 15 l~~~dw~----~ileicD~In~-----~~~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~ 85 (151)
T d1juqa_ 15 NRQEDWE----YIIGFCDQINK-----ELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 85 (151)
T ss_dssp CSSCCHH----HHHHHHHHHHH-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHhc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHH
Confidence 4566895 44446666652 122236889999999999999999999999999999999999765 356888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000156 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (2015)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~ 981 (2015)
.+.+.+.. ....|++-+...+..|....+-...+..+...|.
T Consensus 86 ~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~~~~~~~~~Y~~Lk 133 (151)
T d1juqa_ 86 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 133 (151)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 88887764 2557999999999999988753333333444443
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.73 E-value=0.45 Score=47.78 Aligned_cols=98 Identities=16% Similarity=0.266 Sum_probs=77.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+.+.||. ++-.|.+++.. .+..-.+.+.+|++||...|.+++..||.++..+++.+|+.|... .+.|+.
T Consensus 21 l~~~dw~----~ileicD~I~~-----~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~ 91 (145)
T d1ujka_ 21 NKELDWA----SINGFCEQLNE-----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 91 (145)
T ss_dssp CSSCCHH----HHHHHHHHHTS-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHH
Confidence 4556894 55556666631 222236889999999999999999999999999999999999754 456888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000156 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~g 968 (2015)
.+.+.+.+ ....|++-+...+..|....+
T Consensus 92 ~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp 126 (145)
T d1ujka_ 92 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 126 (145)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence 88887764 455799999999999998875
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.37 E-value=0.33 Score=48.78 Aligned_cols=99 Identities=17% Similarity=0.316 Sum_probs=76.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~--~~llp 939 (2015)
+.+.||. ++-.|..++.. .+..-.+.+.+|+++|++.|.+++..|+.++..+++.+|..|...+ +.|+.
T Consensus 18 ~~~~dw~----~il~icD~I~~-----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~ 88 (145)
T d1dvpa1 18 RLEPDWP----SILLICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (145)
T ss_dssp CSSCCHH----HHHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCCCHH----HHHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHH
Confidence 4566885 55556666652 2223478999999999999999999999999999999999987543 45666
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000156 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHL 969 (2015)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl 969 (2015)
.+.+.+.. +...|++-+.+.+..|....+-
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (145)
T d1dvpa1 89 MFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (145)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 66665543 3567999999999999998753
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.64 Score=46.44 Aligned_cols=110 Identities=15% Similarity=0.241 Sum_probs=81.2
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+...||. ++-.|.+++.. .+..-.+.+.+|+++|+..|..++..|+.++..+++.+|+.|... .+.|+.
T Consensus 14 ~~~~dw~----~il~icD~I~~-----~~~~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~ 84 (143)
T d1mhqa_ 14 MSEQDWS----AIQNFCEQVNT-----DPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (143)
T ss_dssp CSSCCHH----HHHHHHHHHHH-----SSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHc-----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 4556884 55556666652 122236789999999999999999999999999999999999764 356777
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 000156 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (2015)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L 980 (2015)
.+.+.+.+ ....|++-+...+..|.....-+.-+..+...|
T Consensus 85 ~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~~~~~~~~~y~~L 131 (143)
T d1mhqa_ 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQML 131 (143)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 77777764 356799999999999998875333233333334
|
| >d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Tom1 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.43 E-value=1.1 Score=45.11 Aligned_cols=98 Identities=19% Similarity=0.381 Sum_probs=70.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~ll 938 (2015)
+...||.. +-.|.+++.. .+..-.+.+.+|++||. ..|.+++..||.++..+++.+|..|... .+.|+
T Consensus 25 l~~~dw~~----il~icD~In~-----~~~~~k~a~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh~evas~~Fl 95 (153)
T d1elka_ 25 LQSEDWAL----NMEICDIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 95 (153)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCcccHHH----HHHHHHHHhC-----CCcCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHH
Confidence 45568953 4446666642 12223679999999985 5699999999999999999999999654 34466
Q ss_pred HHHH-HHhC---CCcHHHHHHHHHHHHHHHHhcC
Q 000156 939 SDIL-KCLG---DNKKHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 939 p~ll-~~L~---D~k~~Vr~aa~~aL~~i~~~~g 968 (2015)
-.++ ..+. +....|++-+...+..|.....
T Consensus 96 ~~ll~~~~~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (153)
T d1elka_ 96 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 129 (153)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 5543 2222 2345699999999999988764
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.87 E-value=0.48 Score=47.40 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=63.1
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHhhhhhhhcC------CChhHHHHHHHHHHHH
Q 000156 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLEL 195 (2015)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~~------~d~~VR~~a~~l~~el 195 (2015)
.+...+..|.+.+.|+||+++.-|+..|-.++++=|... +.-+.|+..|.+++.. .+..||+....++.+.
T Consensus 35 ~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~W 114 (143)
T d1mhqa_ 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (143)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 356778888899999999999999999999999888742 3457789999988863 5788999999998888
Q ss_pred HHHhCC
Q 000156 196 CRWIGK 201 (2015)
Q Consensus 196 y~~lG~ 201 (2015)
+.+...
T Consensus 115 a~~f~~ 120 (143)
T d1mhqa_ 115 TVWFPE 120 (143)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 776653
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.05 E-value=0.38 Score=48.36 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=63.1
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC---CcChhHHHhhhhhhhcC-CChhHHHHHHHHHHHHHHHhC
Q 000156 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFDH-QDQNVRASSKGLTLELCRWIG 200 (2015)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~---~i~~k~il~~l~~ll~~-~d~~VR~~a~~l~~ely~~lG 200 (2015)
++..++..|.+.+.|+||+++.-|+..|-.++++=|.. .+.-+.++..+.+++.. .+..||+....++..-....+
T Consensus 39 ~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (145)
T d1dvpa1 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (145)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 36678889999999999999999999999999986663 23346788888888865 478899999999988887776
Q ss_pred C
Q 000156 201 K 201 (2015)
Q Consensus 201 ~ 201 (2015)
.
T Consensus 119 ~ 119 (145)
T d1dvpa1 119 S 119 (145)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=84.60 E-value=0.14 Score=55.94 Aligned_cols=113 Identities=17% Similarity=0.124 Sum_probs=76.4
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH
Q 000156 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (2015)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 369 (2015)
+...+.+.+|..|..+...+ + ...|...++|.+..|+..++.. ++ .+
T Consensus 119 L~~Ll~D~d~~VR~~aa~~~------~----------~~~L~~L~~D~d~~VR~~aA~~-------~~----------~~ 165 (233)
T d1lrva_ 119 LEQMAADRDYLVRAYVVQRI------P----------PGRLFRFMRDEDRQVRKLVAKR-------LP----------EE 165 (233)
T ss_dssp GGGGTTCSSHHHHHHHHHHS------C----------GGGGGGTTTCSCHHHHHHHHHH-------SC----------GG
T ss_pred HHHHhcCCCHHHHHHHHhcc------c----------hhHHHHHhcCCCHHHHHHHHHh-------cC----------HH
Confidence 44447899999999987642 1 1234456679998888766542 22 13
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000156 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2015)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2015)
.++..++|..+.||..+...+ +. +.|...+++.+|.||..+..- . .+.
T Consensus 166 ~L~~l~~D~d~~VR~~aa~~L---------~~----~~L~~l~~D~d~~VR~aaae~-------~------------~~~ 213 (233)
T d1lrva_ 166 SLGLMTQDPEPEVRRIVASRL---------RG----DDLLELLHDPDWTVRLAAVEH-------A------------SLE 213 (233)
T ss_dssp GGGGSTTCSSHHHHHHHHHHC---------CG----GGGGGGGGCSSHHHHHHHHHH-------S------------CHH
T ss_pred HHHHHccCCCHHHHHHHHHhc---------Cc----HHHHHHHhCCCHHHHHHHHHh-------c------------cHH
Confidence 455667899999998765433 11 234556789999999887531 1 134
Q ss_pred HHHHhcCCCHHHHHHHHH
Q 000156 450 CMECLNDGTPEVRDAAFS 467 (2015)
Q Consensus 450 l~k~L~Ds~~~VR~aA~~ 467 (2015)
+.+.|.|.+++||.+|.+
T Consensus 214 ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 214 ALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHHCCCCCHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHH
Confidence 557789999999999875
|