Citrus Sinensis ID: 000159
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2013 | 2.2.26 [Sep-21-2011] | |||||||
| Q94FN2 | 1978 | Protein MOR1 OS=Arabidops | yes | no | 0.976 | 0.993 | 0.760 | 0.0 | |
| Q5N749 | 1997 | Protein MOR1 OS=Oryza sat | yes | no | 0.982 | 0.989 | 0.723 | 0.0 | |
| Q14008 | 2032 | Cytoskeleton-associated p | yes | no | 0.691 | 0.685 | 0.306 | 1e-177 | |
| A2AGT5 | 2032 | Cytoskeleton-associated p | yes | no | 0.696 | 0.689 | 0.298 | 1e-171 | |
| Q1ZXQ8 | 2013 | Centrosomal protein 224 O | yes | no | 0.499 | 0.499 | 0.263 | 8e-96 | |
| O94534 | 809 | Spindle pole body compone | yes | no | 0.249 | 0.621 | 0.283 | 6e-47 | |
| Q09933 | 882 | Phosphoprotein p93 OS=Sch | no | no | 0.236 | 0.539 | 0.247 | 2e-31 | |
| P46675 | 888 | Protein STU2 OS=Saccharom | yes | no | 0.319 | 0.724 | 0.251 | 7e-30 | |
| G5EEM5 | 1415 | Zygote defective protein | yes | no | 0.110 | 0.156 | 0.288 | 3e-17 | |
| Q2UCC9 | 1184 | Protein stu1 OS=Aspergill | no | no | 0.145 | 0.246 | 0.226 | 0.0002 |
| >sp|Q94FN2|MOR1_ARATH Protein MOR1 OS=Arabidopsis thaliana GN=MOR1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 3057 bits (7926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1535/2018 (76%), Positives = 1732/2018 (85%), Gaps = 52/2018 (2%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +A AS K G KKDGS + E SK E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK +K+ KS SNG K GNR SR +PTKG+ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1615
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1616 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1675
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1676 DLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1735
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT TIG
Sbjct: 1736 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIG 1795
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1796 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1855
Query: 1855 LGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENP 1914
L + SP+ LS + + MN +S+ YT+D R AS + P
Sbjct: 1856 LALPSPDIPSLSSLDVKPL-----MNPRSD--------LYTDDIR-----ASNMNP---- 1893
Query: 1915 LSDQRNERFGVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQSRSS 1974
GV +GTLDAIRERMK+MQLA++ +P ++PL+ NDN++ ++ QS
Sbjct: 1894 ---------GVMTGTLDAIRERMKNMQLASS----EPVSKPLMPTNDNLS--MNQQSVPP 1938
Query: 1975 DRASVEN-PAQGSVLPMDEKALSGLQARMERLKSGTIE 2011
+ E VLPMDEKALSGLQARMERLK G++E
Sbjct: 1939 SQMGQETVHTHPVVLPMDEKALSGLQARMERLKGGSLE 1976
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Microtubule-binding protein that is essential for cortical microtubules organization and function. Essential for maintaining the interphase cortical array and for correct morphogenesis. Promotes rapid growth and shrinkage of microtubules and suppresses the pausing of interphase microtubules. Regulates the structure and function of microtubule arrays during mitosis and cytokinesis. Probably not required for cellulose microfibrils alignment in roots. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5N749|MOR1_ORYSJ Protein MOR1 OS=Oryza sativa subsp. japonica GN=MOR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2881 bits (7468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1468/2030 (72%), Positives = 1714/2030 (84%), Gaps = 53/2030 (2%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE GPLFKKTV
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFKKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDAL+A+ +AADADA RYAKEVCDAI AKCLTGRPKTVEKAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALLAFQRAADADASRYAKEVCDAIVAKCLTGRPKTVEKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEA +VFL+ MEKA+KNKVAKAVVPAIDVMFQALSEFGAK++PPK+ILKMLPELFDH D
Sbjct: 123 ELEAAEVFLESMEKAVKNKVAKAVVPAIDVMFQALSEFGAKVVPPKKILKMLPELFDHPD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRASSKGLTLELCRWIGK+PVK ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASSKGLTLELCRWIGKEPVKAILFEKMRDTMKKELEAELANVSGIAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
+KEL +E++ E G SEE+ + P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 EKELEEEVVPEAAGTNNSEEAVPEAPMEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
R+DAVAELTKLASTK+IAPGDF E+CRTLKKLITDVN+AV+VEA QAIGNLA+GLRTHFS
Sbjct: 303 RRDAVAELTKLASTKKIAPGDFHEICRTLKKLITDVNLAVSVEATQAIGNLAKGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
G+SR LLPVLLEKLKEKKPT+ E+L+QTLQAMHK+GC+ L+DV+EDV+ +VKNKVPLVRS
Sbjct: 363 GNSRVLLPVLLEKLKEKKPTMTEALSQTLQAMHKSGCITLLDVIEDVRVAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
LTLNWV FCIETS+KA VLK+HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PL
Sbjct: 423 LTLNWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLS+MI GS D +GT +A +G + E +SS +R+SAASM
Sbjct: 483 ERSLEKLDDVRKKKLSDMI-GSASDTTSGTVAA--SNTGVGTSAREVMDSSSMRRSAASM 539
Query: 542 LSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAP--EDVEPSEMSLEEIESRL 598
LSGK+PV A PA+KK GP K +AKK G Q SK + AP EDVEPSEMSLEEIE +L
Sbjct: 540 LSGKKPVQAVPATKKSGPAKSATAKKTDGGPQ--SKASAAPVIEDVEPSEMSLEEIEEKL 597
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
S++ ++T+ QLKS VWKERLEAIS L+Q+VE++ LD+S E+LVRL+C +PGWSEKNVQ
Sbjct: 598 SSVVKSETISQLKSTVWKERLEAISMLKQEVESLTELDKSAELLVRLLCAVPGWSEKNVQ 657
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQVIEV Y+A+T +FPK+CVVLCLLGISERVADIKTR HAMKCLT F EAVGPGF+
Sbjct: 658 VQQQVIEVSTYIASTVNRFPKRCVVLCLLGISERVADIKTRGHAMKCLTAFCEAVGPGFV 717
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMVSAVEDFG+S+LKLKD IDFCKD GLQSSAAATRNA
Sbjct: 718 FERLYKIMKEHKNPKVLSEGILWMVSAVEDFGISNLKLKDTIDFCKDIGLQSSAAATRNA 777
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV-VPKKTVRASESTSSV 837
TIKL+G LHKFVGPDIKGFL+DVKPALLS LDAEYEKNPFEGT PK+TVRA+++ SS
Sbjct: 778 TIKLIGVLHKFVGPDIKGFLSDVKPALLSTLDAEYEKNPFEGTASAPKRTVRAADAVSSA 837
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSG SDGLPREDIS K TPTL+K+L SPDWK+RLESI+AV+KI+EEA+KRIQP GT ELF
Sbjct: 838 SSGTSDGLPREDISAKITPTLLKNLGSPDWKLRLESIDAVSKIVEEAHKRIQPTGTVELF 897
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
LR RLYDSNKNLVMATL T+G +ASAMGPAVEKSSKG+L+D+LKCLGDNKKHMRECTL
Sbjct: 898 TALRARLYDSNKNLVMATLSTIGGLASAMGPAVEKSSKGILADVLKCLGDNKKHMRECTL 957
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T LD W+AA LDKMVPY+T L D K G+EGRKDLFDWLSK + +S +A LLKP+
Sbjct: 958 TALDLWVAAAQLDKMVPYITVTLGDQKTGSEGRKDLFDWLSKHASNMSDPSEALPLLKPS 1017
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ ++ DKSS+VRKAAE+ + EIL+ GQ+ + KNLKD+ P LA++ ER+KL+ +
Sbjct: 1018 ASSLMDKSSEVRKAAESFMNEILKICGQDVVAKNLKDLPSPTLAIVAERLKLSTVHEGFS 1077
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
SM SK+ SK K N + ++A+S R IP + + +++S QD ++Q
Sbjct: 1078 DSVKMVTTSMSLPSKAGSKNNKHGPNDRGSNVSKAVSQRGIPARSSV--TMISSQD-SIQ 1134
Query: 1128 SQALLNVKDSNKEDRERMV-VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKK 1186
SQAL N+KDSNKE+RER V VR+FKFE+PR EQI EL+ ++ ++FRED+ RL ++DFK+
Sbjct: 1135 SQALFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKR 1194
Query: 1187 QVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEG 1246
Q+DG+E+LQKALPS RK++IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D+
Sbjct: 1195 QIDGIELLQKALPSSRKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQS 1254
Query: 1247 YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNR 1306
Y LTE+EAA+FLPCL+EKSGHNIEKVREKM EL KQ+VN YS K LPYILEGLRSKNNR
Sbjct: 1255 YMLTEAEAAIFLPCLMEKSGHNIEKVREKMGELIKQMVNIYSLPKLLPYILEGLRSKNNR 1314
Query: 1307 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
TRIECVD++G+ +DHHG E+SG LK+L VA+LTAERDGEIRKAALNTLAT YK LG+D+
Sbjct: 1315 TRIECVDIIGYFMDHHGTEVSGLLKNLPSVAALTAERDGEIRKAALNTLATAYKNLGDDV 1374
Query: 1367 WRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD-V 1425
WRYVGKL+DAQ+SMLDDRFKWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+ V
Sbjct: 1375 WRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGEAV 1434
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVS-GPTDWNEALDIISFGSPEQSVEGMK 1484
S+S++G + R N+G+S+ H ++PR +A+ + GP DW EALDI++ G PEQSVEGMK
Sbjct: 1435 SRSMAGSMISRENFGYSDAH----MVPRQMATATPGPADWREALDIVALGLPEQSVEGMK 1490
Query: 1485 VVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLM 1544
V+CHEL QA DPE SV+D+L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTLM
Sbjct: 1491 VICHELTQAV-DPESSVLDDLIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTLM 1549
Query: 1545 QTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRT 1604
QTFQ KRLA+AV+E TLD+LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNA+RT
Sbjct: 1550 QTFQIKRLAHAVKEGTLDNLITELLLWLLDERVPLMDDGSQLLKALNVLMLKILDNAERT 1609
Query: 1605 SSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDR 1664
SSFVVLINLLRPLDPSRWPSP ES A +NQ+FSDLVVKCLIKLTKVLQSTIY+VDLDR
Sbjct: 1610 SSFVVLINLLRPLDPSRWPSPTPPESLAVKNQKFSDLVVKCLIKLTKVLQSTIYEVDLDR 1669
Query: 1665 ILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQ 1724
ILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPID +PQ
Sbjct: 1670 ILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDAEPQ 1729
Query: 1725 PIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKK 1784
PIILAYIDLNL+TLAAARMLT +G GQTHWGD+ +NNP +T+S DAQLKQELAA+FKK
Sbjct: 1730 PIILAYIDLNLQTLAAARMLTPSGTMGQTHWGDAGSNNPNPSTHSTDAQLKQELAAVFKK 1789
Query: 1785 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS 1844
IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS
Sbjct: 1790 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSS 1849
Query: 1845 VPMATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAI 1904
+P++T PP + SP+FAP SPVHT S+N+ N + T R G I
Sbjct: 1850 LPLST-PPPIAPIPSPKFAP-SPVHTKSINNKTDCNEDDAGGD-------THPFRGQGEI 1900
Query: 1905 ASKVLPPENPLSDQRNERFGVTSGTLDAIRERMKSMQLAAAAGNPDPGN-RPLINMNDNV 1963
+++ ++ + +R+ +SGTLDA+RERMKS+Q AA N D RPL +MN N
Sbjct: 1901 DNRL-----QTTNLQTDRYQ-SSGTLDALRERMKSIQAAAVGANFDGVQARPLPSMNGNT 1954
Query: 1964 NNGLSSQSRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2013
+G R + Q + PMDE+ALSGLQARMERLKSG++EPL
Sbjct: 1955 LHG-------GTRLDADPQTQNIIPPMDERALSGLQARMERLKSGSMEPL 1997
|
Microtubule-associated protein that is essential for cortical microtubules organization and function. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q14008|CKAP5_HUMAN Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 623 bits (1607), Expect = e-177, Method: Compositional matrix adjust.
Identities = 463/1511 (30%), Positives = 761/1511 (50%), Gaps = 119/1511 (7%)
Query: 13 KLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKA 72
KLP + + HK WK R + + I D K + L KK V DSNA VQ K
Sbjct: 9 KLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKG 68
Query: 73 LDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLD 131
L+A + Y++ A AG+ EV + +K + K E + ++++E+E + +
Sbjct: 69 LEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQE 127
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGL 191
+ K + NK K +V I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K +
Sbjct: 128 ELLKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLI 187
Query: 192 TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELI 250
+E+ RWI +D ++ L + + KELE E V + +A RPTR +R++Q+ E E
Sbjct: 188 AVEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQ 245
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ +
Sbjct: 246 QSAGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALESVE 304
Query: 311 KLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369
L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F + ++P
Sbjct: 305 VLIKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVP 364
Query: 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT- 428
+LEK KEKKP V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 365 TILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIAR 422
Query: 429 ---FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482
C ++ ++LK P C ++ +ND PEVRDAAF L K VG + +
Sbjct: 423 SFRHCTASTLPKSLLK------PFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVN 476
Query: 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV---RKSAA 539
+ +D ++ +K+ E S +V+ G + A + F ++AA
Sbjct: 477 PFLADVDKLKLDKIKE-------------CSEKVELIHGKKAGLAADKKEFKPLPGRTAA 523
Query: 540 SMLSGKR-----------PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDV 584
S +G + P+ APA+K GGP K A G+G T K E E V
Sbjct: 524 SGAAGDKDTKDISAPKPGPLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIV 583
Query: 585 EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644
EP E+S+E E + +++P + L S+ WKERL + ++ VE + + + LVR
Sbjct: 584 EP-ELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVR 642
Query: 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMK 704
++ PGW E N QV Q + ++ +A F K + L G+ +++ D+K +A +
Sbjct: 643 MLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGNNAKE 701
Query: 705 CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764
+T +EA + E++ + KNPK SE + W+ +A+++FG S L +K I K
Sbjct: 702 AMTAIAEACMLPWTAEQVVSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK 761
Query: 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 824
T L ++ A R A I LLG ++ +VGP ++ F D KPALLS +DAE+EK +G P
Sbjct: 762 -TALAATNPAVRTAAITLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEK--MQGQSPP 818
Query: 825 KKTVRASESTSSVSSGGSDG-------------LPREDISGKFTPTLVKSLESPDWKVRL 871
T S+ ++S + G DG LPR +IS K T LV + +WK+R
Sbjct: 819 APTRGISKHSTSGTDEGEDGDEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKIRK 878
Query: 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931
E ++ V I+ +A K IQP GEL L+GRL DSNK LV TL L +A AMGP ++
Sbjct: 879 EGLDEVAGIINDA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIK 936
Query: 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRK 991
+ K + I+ LGD+K ++R L ++AW + + + + K R+
Sbjct: 937 QHVKNLGIPIITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQ 996
Query: 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
+L WL+++L L P L P + + D++ DVRK A+ + + G E + K
Sbjct: 997 ELLGWLAEKLPTLRSTPTDLILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAK 1056
Query: 1051 ---NLKDIQGPALALILERIKLN-----------------GASQVSMGPTSK------SS 1084
LK + +LE+ K+N G++ P S SS
Sbjct: 1057 ATGKLKPTSKDQVLAMLEKAKVNMPAKPAPPTKATSKPMGGSAPAKFQPASAPAEDCISS 1116
Query: 1085 SKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER 1144
S PK G +SS+ +G + S S+++ +S + V + KE R +
Sbjct: 1117 STEPKPDPKKAKAPG---LSSKAKSAQGKKMPSKTSLKEDEDKSGPIFIVVPNGKEQRMK 1173
Query: 1145 ----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200
+ V ++ F PR E I++L+ M + L + +DF+ L ++ L S
Sbjct: 1174 DEKGLKVLKWNFTTPRDEYIEQLKTQMSSCVAKWLQDEMFHSDFQHHNKALAVMVDHLES 1233
Query: 1201 IRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPC 1260
++ +I LD++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+EA+ F+P
Sbjct: 1234 EKEGVIGCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPY 1293
Query: 1261 LVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLID 1320
LV K G + +R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++ +G L++
Sbjct: 1294 LVVKVGEPKDVIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLVE 1353
Query: 1321 HHGAEISGQL--KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQK 1378
+G + K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G L++
Sbjct: 1354 SYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDM 1413
Query: 1379 SMLDDRFKWKVREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQSGDVSQS 1428
SML++R K + K+ E KP A+ LR+ E+ S Q+ +S
Sbjct: 1414 SMLEERIKRSAKRPSAAPIKQVEEKPQRAQNISSNANMLRKGPAEDMSSKLNQARSMSGH 1473
Query: 1429 VSGPTLMRRNY 1439
++RR +
Sbjct: 1474 PEAAQMVRREF 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Homo sapiens (taxid: 9606) |
| >sp|A2AGT5|CKAP5_MOUSE Cytoskeleton-associated protein 5 OS=Mus musculus GN=Ckap5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 604 bits (1557), Expect = e-171, Method: Compositional matrix adjust.
Identities = 448/1501 (29%), Positives = 753/1501 (50%), Gaps = 99/1501 (6%)
Query: 13 KLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKA 72
KLP + + HK WK R + + I D K + L KK V DSNA VQ K
Sbjct: 9 KLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKG 68
Query: 73 LDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLD 131
L+A + Y++ A AG+ EV + +K + K E + +++VE+E + +
Sbjct: 69 LEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQE 127
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGL 191
+ K + NK K +V I+ + +ALSEFG+KII K I+K+LP+LF+ +D+ VR +K
Sbjct: 128 ELLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLF 187
Query: 192 TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELI 250
+E+ RW +D VK L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 188 AIEIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQ 245
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
G D P++D YEL+D V+IL+ L K F++ ++A KW ERK+A+ +
Sbjct: 246 QSAGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDKIEAKKWQERKEALEAVE 304
Query: 311 KLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369
L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F + ++P
Sbjct: 305 VLVKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVP 364
Query: 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT- 428
+LEK KEKKP V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 365 TILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIAR 422
Query: 429 ---FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482
C ++ ++LK P C ++ +ND PEVRDAAF L K VG + +
Sbjct: 423 SFRHCTSSTLPKSLLK------PFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKSVN 476
Query: 483 RSIEKLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK 536
+ +D ++ +++ E ++ G +AT ++ +P A+ + K
Sbjct: 477 PFLADVDKLKLDRIKECSEKVELVHGKKSGLATEKKESK------PLPGRAAASGAAGDK 530
Query: 537 SAASMLSGKRP--VSAAPASKKGGPVKPSAKK----DGSGKQETSKLTEAPEDVEPSEMS 590
+SG +P + P +K GGP K S + K E E VEP E+S
Sbjct: 531 DTKD-VSGPKPGPLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGLETKEIVEP-ELS 588
Query: 591 LEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP 650
+E E + +++P + L S+ WKERL + ++ VE ++ + + LV+++ P
Sbjct: 589 IEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMPCQALVKMLAKKP 648
Query: 651 GWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFS 710
GW E N QV Q + ++ +A F K + L G+ +++ D+K +A + +T +
Sbjct: 649 GWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIA 707
Query: 711 EAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS 770
EA + E++ + KNPK SE + W+ +A+++FG S L +K I K T L +
Sbjct: 708 EACMLPWTAEQVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKAFISNVK-TALAA 766
Query: 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830
+ A R + I LLG ++ +VGP ++ D KPALLS +DAE++K + P + + A
Sbjct: 767 TNPAVRTSAITLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGI-A 825
Query: 831 SESTSSVSSGGS------------DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878
STS+ G D LPR +IS K T LV + +WK+R E ++ V
Sbjct: 826 KHSTSATDEGEDGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNWKIRKEGLDEVA 885
Query: 879 KILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938
I+ EA K IQP GEL L+GRL DSNK LV TL L +A AMG + + K +
Sbjct: 886 GIINEA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGANIRQHVKNLG 943
Query: 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998
++ LGD+K ++R L ++AW + + + + K R++L WL+
Sbjct: 944 IPVITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLA 1003
Query: 999 KQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKD 1054
++L L P L P + + D++ DVRK A+ + + G E + K LK
Sbjct: 1004 EKLPTLRSTPTDLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKP 1063
Query: 1055 IQGPALALILERIKLNGASQVS---------MGPTSKSSSK-VPKSASNGVS-------- 1096
+ +LE+ K N S+ + MG ++ + ++ +P + VS
Sbjct: 1064 TSKDQVLAMLEKAKANMPSKPAAPAKAMSKPMGGSAPAKTQPIPAPVEDSVSSTIEAKPD 1123
Query: 1097 --KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER----MVVRRF 1150
K +SS+ +G + S ++++ +S + V + KE R R + V ++
Sbjct: 1124 LKKAKAPGVSSKAKSVQGKKVPSKTTLKEDDDKSGPIFIVVPNGKEQRMRDEKGLKVLKW 1183
Query: 1151 KFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLD 1210
F PR E I++L+ M + L + +DF+ L ++ L S + +I LD
Sbjct: 1184 NFTTPRDEYIEQLKTQMSTCVAKWLQDEMFHSDFQHHNKALAVMVDHLESEKDGVISCLD 1243
Query: 1211 ILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIE 1270
++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+EA+ F+P L+ K G +
Sbjct: 1244 LILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPYLILKVGEPKD 1303
Query: 1271 KVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQL 1330
+R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++ +G LI+ +G +
Sbjct: 1304 VIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLIESYGMNVCQPT 1363
Query: 1331 --KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWK 1388
K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G L++ SML++R K
Sbjct: 1364 PGKALKEIAIHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDMSMLEERIKRS 1423
Query: 1389 VREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRN 1438
+ K+ E KP + LR+ E+ S Q+ +S ++RR
Sbjct: 1424 AKRPSAAPVKQAEEKPQRTQNINSNANMLRKGPAEDMSSKLNQARSLSGHPEAAQMVRRE 1483
Query: 1439 Y 1439
+
Sbjct: 1484 F 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Mus musculus (taxid: 10090) |
| >sp|Q1ZXQ8|MTAA_DICDI Centrosomal protein 224 OS=Dictyostelium discoideum GN=mtaA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 283/1072 (26%), Positives = 527/1072 (49%), Gaps = 66/1072 (6%)
Query: 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
EDR+ HKNWK R +L + + E GP FKK +AD N Q++AL+ L
Sbjct: 12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPL 71
Query: 77 IAYLKAADADAGRYAKEVCDAIAAKCL-TGRPKTVEKAQAVFMLWVELEAVDVFLDVMEK 135
A++ D ++A + K + RP+ EK +L +E ++ + ++ + K
Sbjct: 72 SAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLK 130
Query: 136 AIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195
+ K ++ ++ + QAL FG K IP K ILK F+++D+ +R + L +E+
Sbjct: 131 GTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEI 190
Query: 196 CRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISEDV 254
RWIGK + ++ E + K L+ + + + A P + R+E K L S+ +
Sbjct: 191 YRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPAVPLKYTRSEAAKALANA--SKGI 247
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-TKLA 313
P +V EID Y L+ V+IL P S F+EG++A KW ER + + +L T L
Sbjct: 248 QAKP------EVVEEIDPYSLMTAVNIL-PKLTSEFYEGLQAKKWQERSEQMDKLVTILT 300
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373
+T +I DF+E+C+ LKK++ DVN+ + +A+ +IG LA LR F+ + + +LE
Sbjct: 301 NTPKIETADFSELCKALKKILADVNVMIVQKAVVSIGLLADSLRGGFTSYVKPFITPILE 360
Query: 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433
K KEKK +V +S+ T+ ++ ++L D+++++ ++++KVP ++ L ++ I
Sbjct: 361 KFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTATMQSKVPQIKQEVLVFICNSITN 419
Query: 434 SSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492
+ K A + KV K I ME LND +RD A AA+ +G R + + ++D ++
Sbjct: 420 TKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAFAALGGIIGERAMTPYLNQIDPIK 479
Query: 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552
K+ + + VAT + + + ++ SS S K+P +A
Sbjct: 480 AKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLPVSS----------SNKKPAAATG 525
Query: 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL--GSLIPADTVGQL 610
SK S + + + P S ++I+++L ++ + + L
Sbjct: 526 NSKS------------SSTTTPTGRSSNSSPLPPPPSSSDDIKNKLIGAGIVNNEIIEGL 573
Query: 611 KSAVWKERLEAISSLRQQVEAV--QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 668
WK+RL+A+ + + V+ + +++ E +++L+C P E N QV + +
Sbjct: 574 GKTQWKDRLQAVDDILENVKGLTADSINGMSESIIQLLCDKPSLKESNFQVLSSIFSIFI 633
Query: 669 YLAATATKFP-KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
+ F ++C L E++ D+K + + + L + E++ P +F +Y+
Sbjct: 634 QCCKNDSNFTQQRCANSYLTTCIEKLTDVKLKEISSELLFSTGESITPHAVFTSIYQFTS 693
Query: 728 DHKNPKVLSEGILWMVSAVEDFGVSHL-----KLKDLIDFCKDTGLQSSAAATRNATIKL 782
+HKNPK++++ ++W+ A+++FG+ +LK L+D+ K L+S+ + + IKL
Sbjct: 694 NHKNPKIIADSLVWIQQAIDEFGIGCCSNGIQQLKPLLDYTKQC-LESTNPDVKKSAIKL 752
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842
L + +G + FL DVK + LD E++K + VP + + S
Sbjct: 753 LCTIKINIGATLTDFLGDVKKPTMEVLDREFQKIRDQKPPVPNRQWKGMPPPGSAPVQIE 812
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902
PR DIS K TP ++ +L +WK R ++++ + +I+ +AN++IQP G L L+
Sbjct: 813 --FPRVDISVKLTPAIITNLSDANWKTRSDALDEIERIIIDANRKIQPK-LGGLIPALKN 869
Query: 903 RLYDSNKNLVMATLITLGAVASAM-GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
RL D+N+ + TL +G ++ AM G + EK ++ ++ IL LGD+KK +R+ ++ ++
Sbjct: 870 RLTDNNQKCTITTLNIIGMLSQAMGGQSFEKHARLLIPGILLLLGDSKKPVRDAVISCMN 929
Query: 962 AWLAA-VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP---DAAHLLKPA 1017
+ + + D + + + A RK+ W +T + P + L K
Sbjct: 930 VIVQSDLGFDVFIGSLAAPMIQE--SAFTRKESLAWTIVNVTNMKAAPIPSEINTLAKGI 987
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ---GPALALILER 1066
+ DKS+++R A+ + + +K LK ++ P++ IL++
Sbjct: 988 ISCLQDKSAEIRSLADNLLSILCTQIPLIEFKKELKHVKPASQPSIQTILDK 1039
|
Involved in regulation of microtubule dynamics. Regulates the interaction of microtubules tips with the centrosome and cell cortex. Dictyostelium discoideum (taxid: 44689) |
| >sp|O94534|ALP14_SCHPO Spindle pole body component alp14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (485), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 161/568 (28%), Positives = 263/568 (46%), Gaps = 65/568 (11%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRI---RELGPLF 57
MS++++ ++ KLP E R++HK WKVR A + + D DN L+
Sbjct: 1 MSQDQE--EDYSKLPLESRIVHKVWKVRLSAYEECSKSFSLSADGSDNCFELWNNQSELW 58
Query: 58 KKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCD-AIAAKCLTG-RPKTVEKAQA 115
K + DSN Q+ A +AY + +D A+E+ +I+ KCLT R T E A
Sbjct: 59 KSVLTDSNVAAQEAGTAAFVAYCRFSDPSHLLKAREISVLSISEKCLTSPRAGTRENALE 118
Query: 116 VFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPE 175
ML VE ++ ++ + ++ + K + + + + +FGAK+IP K I+ +
Sbjct: 119 ALMLLVEADSAAPVIESIIPSLSARSPKVIASNVAAIASLVEQFGAKVIPSKMIIPHISN 178
Query: 176 LFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235
LF H D+NVR + LT+ + RW G DP+K +LF+ +R KELE + P +
Sbjct: 179 LFGHADKNVRKEASRLTVNIYRWTG-DPLKDLLFKDLRPVQTKELESLFAEL--PTEPPK 235
Query: 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEI-----------DEYELVDPVDILTP 284
+ R L S+ P+ E+ + P + D+++LV+ VD+L P
Sbjct: 236 QTRF---------LKSQQPTSEPNVETQVEEQPALENEESEPEPSDDQFDLVEEVDVL-P 285
Query: 285 LEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAV 343
+ ++KW +RK+A+ +L + S +I DF + L K ++ D NI V +
Sbjct: 286 NVDPNLETLMASSKWKDRKEALDKLLPVLSQPKIKDNDFFNLVAILTKSVSKDANIMVVI 345
Query: 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403
A I +A+GLR++FS + + LLE+ KEKK V ESL+ + A+ L+ D
Sbjct: 346 NAAHCIQAMAKGLRSNFSKYASTSINALLERSKEKKANVIESLSSAMDAVLATSSLD--D 403
Query: 404 VVEDVKTSVKNKVPLVRSLTLNWVT------------FCIETSSKAAVLKVHKDYVPICM 451
+ E + + NK P ++S + + F ++T +KA V V + P
Sbjct: 404 LAELIASFAGNKNPQIKSSCFSLFSRSFSNMTSLPSKFTVDTCAKACVPGVSDTFEP--- 460
Query: 452 ECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511
VR AA L + K VG R + + + LDD+R++K+ T T
Sbjct: 461 ---------VRSAAAEALGVLMKLVGERAINQYLSPLDDIRKSKIRSF-------YETAT 504
Query: 512 SSARVQTSGGSVPSVEASESSFVRKSAA 539
A+ T V + ES V S A
Sbjct: 505 VKAKAPTKKSKVKPSKQEESKVVVPSNA 532
|
Required for bipolar spindle formation and proper chromosome segregation. Has a role in connecting the kinetochores and the plus end of pole to chromosome microtubules. Also required for the activation of the spindle checkpoint pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q09933|DIS1_SCHPO Phosphoprotein p93 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dis1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 129/521 (24%), Positives = 233/521 (44%), Gaps = 45/521 (8%)
Query: 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIREL---GPLFKKTVADSNAPVQDKALDA 75
++ K+WKVR EA L + D D + L+K+ + DSN P Q+ A+ +
Sbjct: 13 QIFDKSWKVRFEAYESLLHALNRALDDSDVCFQPWIHDPALWKQGLCDSNVPTQEHAVKS 72
Query: 76 LIAYLKAADADAGRYAKE-VCDAIAAKCLTGRPKTVEKA--QAVFMLWVELEAVDVFLDV 132
L +L + AK V + KCL +++ A QA+ +L + +A+D L+
Sbjct: 73 LRCFLDKSRQKGVNSAKSFVVAPLLEKCLPSPRQSIRDASHQALLIL-AKSDALDYVLEG 131
Query: 133 MEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ A + K K V +I + L FG + P K++P LF D+N+R + L+
Sbjct: 132 LFSAARVKHPKQAVASIKELNSLLENFGIPALSPIPFYKLIPTLFAQSDKNIRQEASNLS 191
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV------------------------S 228
+ L W+G + KT +F +++ +LE NV S
Sbjct: 192 ITLYAWVG-NAFKTHVFPQLKQIQVSDLEASFQNVTSRTTTGGHISNSLNTQEVVLPSFS 250
Query: 229 GTARPTRKIRAEQDKELG--QELISEDVGPG-----PSEESTADVPPEIDEYELV---DP 278
A+P + ++ + Q S P PS+ S + + + + P
Sbjct: 251 SNAKPKPHLSSKSSSQGNTLQRSTSSFSTPNRKVSQPSDFSASPSRSIVSPAKNIVGSTP 310
Query: 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVN 338
VD+L+ L F + + KW +RK+A+ + + S GD++E+ R + K + D N
Sbjct: 311 VDVLSKLTPE-FHTALSSPKWKDRKEALESMVPVCSNPVYQEGDYSELLRVIAKSLKDAN 369
Query: 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398
+ V A + ++A+ LR F + +LP L ++ KE+K ++ SL A+ ++
Sbjct: 370 VVVVGVAALLLTHIAKALRKGFLPYTGIVLPSLFDRFKERKSSLVHSLLDAANAIFESCG 429
Query: 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458
LN D++++ +K+K P V++ TL W+ C++ + + +C+ +ND
Sbjct: 430 LN--DIMDETLEFLKHKNPQVKTETLRWLNRCLQLTDVCPPRASLETLCSLCVTLINDTF 487
Query: 459 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499
VR A +VLA + + L + I LD + K+ E+
Sbjct: 488 EPVRMATTNVLATLVQIFSQPVLSKYIVGLDPKKLPKILEL 528
|
Has a role in sister chromatid separation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P46675|STU2_YEAST Protein STU2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STU2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 190/754 (25%), Positives = 352/754 (46%), Gaps = 111/754 (14%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALC-DSITD-PKDNRIRELG---P 55
MS EE++ + LP E+RL +K WK R EA +L L +S+ D +D+ I+
Sbjct: 1 MSGEEEV--DYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPT 58
Query: 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVC------DAIAAKCLTG-RPK 108
LF + + DSN Q++A+ AL + + A + + + A + + K LT R
Sbjct: 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT 118
Query: 109 TVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI 163
T ++ + + L ++V++ + EK K+ K + A + +++ ++ FG
Sbjct: 119 TKTQSMSCILSLCGLDTSITQSVELVIPFFEK----KLPKLIAAAANCVYELMAAFGLTN 174
Query: 164 IPPK----RILKMLPELFDHQDQNVRASSKGLTLELCRWIGK--DPVKTILFEKMRDTMK 217
+ + +LK +P+L H D+NVR+ + L +E+ + G D ++ ILF+K++
Sbjct: 175 VNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQV 234
Query: 218 KELEVELVNVSGTARPTRKI----RAEQDKELGQE--------LISEDVGPGPSEES--- 262
K+L V ++ + + E +K+ QE ++S D G ++
Sbjct: 235 KDLHKLFAKVGDEPSSSKMLFEWEKRELEKKRSQEEEARKRKSILSNDEGEYQIDKDGDT 294
Query: 263 ----TADVPP-------EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-- 309
D+PP +ID + ++ IL L K F E + ++KW +R +A+ E
Sbjct: 295 LMGMETDMPPSKQQSGVQIDTFSMLPEETILDKLPK-DFQERITSSKWKDRVEALEEFWD 353
Query: 310 TKLASTKRI--APGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRT-HFSGSS- 364
+ L+ TK++ +++ + +I D NI A Q++ + L+T FS
Sbjct: 354 SVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 413
Query: 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLV 419
+ LL++ KEKKP+V E++ + L + K A D+++D+ +K+K P +
Sbjct: 414 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQI 473
Query: 420 R--SLTLNWVTFCIETSSKAAVLKVHKD-YVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476
R L + E + + + KD VPI ++ +ND P +R F A + K
Sbjct: 474 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 533
Query: 477 GMRPLERSIEKLDDVRRNKLSEMIAG-SGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
GM +++E LD+++R K+ E + +A+G++ + ++T+ + P E+ F+
Sbjct: 534 GMNTFVKTLEHLDNLKRKKIEETVKTLPNFSIASGSTHSTIETNKQTGP----MENKFLL 589
Query: 536 KSAASMLSGKRPVSAAP----ASKKGGPV-------KPS--AKKDGSGKQETSKLTEAPE 582
K +S+L KR V+++P K P+ KPS A + S TSK P+
Sbjct: 590 K-KSSVLPSKR-VASSPLRNDNKSKVNPIGSVASASKPSMVAANNKSRVLLTSKSLATPK 647
Query: 583 DV-----EPSEMSLEEIESRLGSLIPADTVGQLKSAVW-KER---LEAISSLRQ-QVEAV 632
+V + +E +EE + RL L Q +W KER LE +++ ++E +
Sbjct: 648 NVVANSTDKNEKLIEEYKYRLQKL-------QNDEMIWTKERQSLLEKMNNTENYKIEMI 700
Query: 633 QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666
+ + E L L +EKN+Q++ + I+V
Sbjct: 701 KENEMLREQLKEAQSKL---NEKNIQLRSKEIDV 731
|
May play a role in the attachment, organization, and/or dynamics of microtubule ends at the spindle pole body. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|G5EEM5|ZYG9_CAEEL Zygote defective protein 9 OS=Caenorhabditis elegans GN=zyg-9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 10/232 (4%)
Query: 269 EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL--ASTKRIAPGDFTEV 326
E D ++ +D D+L+ + GF +++ KW ERK+A+ L +L A+ K ++ +
Sbjct: 286 EADPWDFLDAFDVLSKM-PDGFDTNIESKKWQERKEALEGLLQLITANPKLDPKANYGAL 344
Query: 327 CRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAES 385
L+K++ D NI VA A I +A GLRT F + + P++ EK KEKKPT+ +
Sbjct: 345 VERLQKVLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDP 404
Query: 386 LTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFC-IETSSKAAVLKVHK 444
L + A+ NL V E V ++ P +++ T ++ C ++ +S+ K K
Sbjct: 405 LVACIDAV--VATTNLEAVGEIVLAALGKPNPSIKTQTDLFLQRCFMKLNSQTMPKKTLK 462
Query: 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496
+P ++ D EVR+A+++ + A+ +++G +P S++ L D+ + L
Sbjct: 463 TLIPSLIKHSGDSDSEVREASYAAMGAMMRAIGEKP---SLQLLADIASDNL 511
|
Plays a major role in organizing microtubules and spindle poles during mitosis and meiosis in one-cell stage embryos. Required for default nucleus positioning in oocytes. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q2UCC9|STU1_ASPOR Protein stu1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=stu1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 139/336 (41%), Gaps = 44/336 (13%)
Query: 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGL----RTHF-SGSSRFLLPVLLEKLKEKKP 380
+ +L+ IT + A+ G+ + L + H S +R PVLLE+L + K
Sbjct: 46 IFESLRLAITSHHAALYAAGFSTFGHFLKRLFIQDQAHIVSAYARHFCPVLLERLGDHKE 105
Query: 381 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440
V Q + A ++ V +V + KN P + +L W++ S +L
Sbjct: 106 RVRAQAAQIFTDLWPAASADVEHYVLEVALTGKN--PKAKETSLIWLS---NMSRNHGLL 160
Query: 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL--DDVRRNKLSE 498
+ YVP + CL D VR A S + + + R +++ +VR++ ++
Sbjct: 161 --FRSYVPSVVSCLEDADSFVRHTAKSTVVELFQGAPARAKADLTKEMTAQNVRQSIVNA 218
Query: 499 MIAGSGGDVATGTSSARVQTSGGSVPSVE------ASESSFVRKSAASMLSGK--RPVSA 550
+ A G + + T+ R + P + AS + V + A+++S RP
Sbjct: 219 VYANIGLEDHSSTARPRSRVEPRYTPCTDSHPLRSASRAEVVHQQPAAVVSSAPLRPSKE 278
Query: 551 APASKKGGPVK--PSAKKDGSGK-----------------QETSKLTEAPEDVEPSEMSL 591
A + P+K P + K G+ + +S+ EAP+ + +E S
Sbjct: 279 ATPMVEPEPIKSRPGSSKSDKGRTIAAAPEAEKAPHMETARPSSQDGEAPQPLH-AETS- 336
Query: 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627
+++E L PA G+ W+ R + I+SLR+
Sbjct: 337 KQVEDLFRVLSPA-FEGRESEDNWRHREKYITSLRR 371
|
Microtubule binding protein that promotes the stabilization of dynamic microtubules. Required for mitotic spindle formation. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2013 | ||||||
| 255587410 | 1992 | microtubule associated protein xmap215, | 0.982 | 0.992 | 0.844 | 0.0 | |
| 224061471 | 2036 | microtubule organization protein [Populu | 1.0 | 0.988 | 0.841 | 0.0 | |
| 224115548 | 2025 | microtubule organization protein [Populu | 0.998 | 0.992 | 0.838 | 0.0 | |
| 356533943 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.997 | 0.986 | 0.817 | 0.0 | |
| 356574625 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.997 | 0.986 | 0.817 | 0.0 | |
| 19912731 | 2029 | microtubule bundling polypeptide TMBP200 | 0.997 | 0.989 | 0.788 | 0.0 | |
| 449434204 | 2005 | PREDICTED: protein MOR1-like [Cucumis sa | 0.987 | 0.991 | 0.790 | 0.0 | |
| 297823359 | 1980 | hypothetical protein ARALYDRAFT_482523 [ | 0.977 | 0.993 | 0.767 | 0.0 | |
| 30686489 | 1978 | microtubule organization 1 protein [Arab | 0.976 | 0.993 | 0.760 | 0.0 | |
| 413952123 | 1996 | hypothetical protein ZEAMMB73_280693 [Ze | 0.980 | 0.988 | 0.712 | 0.0 |
| >gi|255587410|ref|XP_002534264.1| microtubule associated protein xmap215, putative [Ricinus communis] gi|223525620|gb|EEF28119.1| microtubule associated protein xmap215, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3478 bits (9019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1712/2027 (84%), Positives = 1835/2027 (90%), Gaps = 49/2027 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAA CDSITDPKD R+RE GPLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAAFCDSITDPKDPRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQASFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAVDVFLD MEKAIKNKVAKAVVPAIDVMFQALSEFGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVDVFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE GPG SEE+ AD P EIDEYELVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEPEAVSEVAGPGQSEEAAADAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
S SSRFLLPVLLEKLKEKKP + ESL QTLQA+HK+GCL+LVD+VEDVKT+VKNKVPLVR
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALTESLAQTLQALHKSGCLSLVDIVEDVKTAVKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
SLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFS LAAIAKSVGMRP
Sbjct: 421 SLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSALAAIAKSVGMRP 480
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
LERS+EKLDDVRR KLSEMI GSGG+ + GTSSA VQ GSV S EASE SFVR+SAAS
Sbjct: 481 LERSLEKLDDVRRKKLSEMIGGSGGNASGGTSSATVQAVSGSVSSTEASEGSFVRRSAAS 540
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
MLSGK+P+ AAPA+KKGGP K K DG+G+ ETSK E PEDVEP+EMSLEEIESRL
Sbjct: 541 MLSGKKPLPAAPANKKGGPTKSGTNKKGDGAGRTETSKAIEPPEDVEPAEMSLEEIESRL 600
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
GSLI A+TV QLKS VWKERLEAISSL+QQVE +Q LDQSVEIL+RL+C +PGW+EKNVQ
Sbjct: 601 GSLIQAETVSQLKSTVWKERLEAISSLKQQVEGLQGLDQSVEILIRLLCAIPGWNEKNVQ 660
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQ+IEVI YLA+TATKFPKKCVVLCLLG SERVADIKTRAHAMKCLTTFS
Sbjct: 661 VQQQMIEVITYLASTATKFPKKCVVLCLLGTSERVADIKTRAHAMKCLTTFS-------- 712
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
VEDFGVS LKLKDLIDFCKD GLQSS AA+RNA
Sbjct: 713 ---------------------------VEDFGVSLLKLKDLIDFCKDIGLQSSVAASRNA 745
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSV 837
TIKLLGALHK+VGPDIKGFL+DVKPALLSALDAEY+KNPFEG + PKKTVRASES SSV
Sbjct: 746 TIKLLGALHKYVGPDIKGFLSDVKPALLSALDAEYDKNPFEGASAAPKKTVRASESMSSV 805
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
S+GG D LPRED+SGK TPTL+KS+ESPDWKVRLESIEAVNKI+EEANKRIQP GTGELF
Sbjct: 806 SAGGLDSLPREDVSGKVTPTLLKSMESPDWKVRLESIEAVNKIIEEANKRIQPTGTGELF 865
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
G LRGRLYDSNKNLVMATL T+G VASAMGPAVEKSSKG+L+DILKCLGDNKKHMREC L
Sbjct: 866 GALRGRLYDSNKNLVMATLTTIGGVASAMGPAVEKSSKGILADILKCLGDNKKHMRECAL 925
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T +D+WLAAVHLDKM+PY+ TAL DAKLGAEGRKDLFDWLS+QL+GLS F DA HLLKPA
Sbjct: 926 TTIDSWLAAVHLDKMIPYIATALIDAKLGAEGRKDLFDWLSRQLSGLSDFSDAVHLLKPA 985
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
AMTDKSSDVRKAAEACI E+LR GQET+EKNLKD+ GPALAL+LER+K GA Q
Sbjct: 986 GSAMTDKSSDVRKAAEACITEVLRVSGQETVEKNLKDLHGPALALVLERVKPYGAFQESF 1045
Query: 1075 -----VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQ 1129
+SMGPTSK+++KV KSA+NGV KH NR SSR IPTKG+R E +MSVQD AVQSQ
Sbjct: 1046 DSAKTISMGPTSKTNAKVGKSATNGVPKHANRITSSRAIPTKGSRSEPMMSVQDRAVQSQ 1105
Query: 1130 ALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVD 1189
ALLNVKDSNKEDRERMVVRRFKFE+ RIEQIQ+LENDMMKYFREDLHRRLLS DFKKQVD
Sbjct: 1106 ALLNVKDSNKEDRERMVVRRFKFEELRIEQIQDLENDMMKYFREDLHRRLLSADFKKQVD 1165
Query: 1190 GLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSL 1249
GLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD LRDE Y+L
Sbjct: 1166 GLEMLQKALPSIAKELIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDMLRDEAYTL 1225
Query: 1250 TESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRI 1309
TESEAA+FLPCL+EK GHNIEKVREKMRELTKQIV+ YSA+KT PYILEGLRSKNNRTRI
Sbjct: 1226 TESEAAIFLPCLIEKLGHNIEKVREKMRELTKQIVHAYSASKTFPYILEGLRSKNNRTRI 1285
Query: 1310 ECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369
E DLVGFLIDHH AEISGQLKSLQIVASLTAERDGE RKAALNTLATGYKILGEDIWRY
Sbjct: 1286 ESADLVGFLIDHHVAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYKILGEDIWRY 1345
Query: 1370 VGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSV 1429
VGKLTDAQKSMLDDRFKWKVREMEK+KEG+PG++RAALRRSVRENG D+AEQSG+VSQSV
Sbjct: 1346 VGKLTDAQKSMLDDRFKWKVREMEKRKEGRPGDSRAALRRSVRENGFDLAEQSGEVSQSV 1405
Query: 1430 SGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE 1489
SGPT +R+NY ELH++R IMP A+ SVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE
Sbjct: 1406 SGPTFLRKNYSPHELHMDRQIMPHAVTSVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE 1465
Query: 1490 LAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQN 1549
LAQAT DPEGS MDELVKDADRLVSCLA+KVAKTFDFSLTGASSRSCKYVLNTLMQTFQN
Sbjct: 1466 LAQATGDPEGSAMDELVKDADRLVSCLASKVAKTFDFSLTGASSRSCKYVLNTLMQTFQN 1525
Query: 1550 KRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV 1609
KRLA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV
Sbjct: 1526 KRLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV 1585
Query: 1610 LINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI 1669
LINLLRP+DPSRWPS AS+E+FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI
Sbjct: 1586 LINLLRPVDPSRWPSSASSETFAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI 1645
Query: 1670 HVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA 1729
H+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA
Sbjct: 1646 HIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA 1705
Query: 1730 YIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQ 1789
YIDLNLETLAAARMLTSTGP GQTHWGDSAANNP+SAT+SADAQLKQELAAIFKKIGDKQ
Sbjct: 1706 YIDLNLETLAAARMLTSTGPVGQTHWGDSAANNPSSATHSADAQLKQELAAIFKKIGDKQ 1765
Query: 1790 TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMAT 1849
TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS+PM+T
Sbjct: 1766 TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSLPMST 1825
Query: 1850 PPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVL 1909
PPP+AL SSPE+APLSPVHTNS+NDAKSMN KSEP NF+LPP+Y+EDNR I S+ L
Sbjct: 1826 PPPSALTASSPEYAPLSPVHTNSINDAKSMNTKSEPANFHLPPAYSEDNRTVNTITSRGL 1885
Query: 1910 PPENPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGL 1967
EN L+DQRNE+F GVT+GTLDAIRERMKSMQLAAAAGNPD GNRPL +NDN++NGL
Sbjct: 1886 ISENSLADQRNEKFLSGVTTGTLDAIRERMKSMQLAAAAGNPDSGNRPLTIVNDNLSNGL 1945
Query: 1968 SSQ-SRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2013
S Q R+ D ENP QG VLPMDEKALSGLQARMERLKSG I+ L
Sbjct: 1946 SGQVPRAPDSVGFENPVQGGVLPMDEKALSGLQARMERLKSGAIDSL 1992
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061471|ref|XP_002300496.1| microtubule organization protein [Populus trichocarpa] gi|222847754|gb|EEE85301.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3467 bits (8989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1714/2036 (84%), Positives = 1852/2036 (90%), Gaps = 23/2036 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKL WEDRLLHKNWKVRNEANIDLA+LCDSI+DPKD+R+RE PLF+KT
Sbjct: 1 MSEEEKLLKEAKKLAWEDRLLHKNWKVRNEANIDLASLCDSISDPKDSRLREFAPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAVDVFLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVDVFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVKGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE VG GPSEE A+ P EIDEY+LVDPVDIL PLEK+GFW+GVKATKWS
Sbjct: 241 QDKEPEPEGVSEVVGSGPSEEVAAEAPQEIDEYDLVDPVDILGPLEKAGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
SGSSRFLLPVLLEKLKEKKPT+ E+L QTLQAMH AGCLNL D++E VKT+VKNK
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTEALAQTLQAMHTAGCLNLADIIEGNLRDYVKTAVKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTLNWVTFCIETS+KA +LKVHKDYVPICMECLNDGTP+VRD+AFSVLAA+AKS
Sbjct: 421 VPLVRSLTLNWVTFCIETSNKAVILKVHKDYVPICMECLNDGTPDVRDSAFSVLAAVAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMIAGSG V SS VQ GS+ SVE SE SFV+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMIAGSGDGVPAVASSGPVQAVRGSMSSVETSEGSFVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVKP--SAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593
KSAASMLSGKRP AA A+KK P K S K DG+G+ E+S+ E PEDVEP+EMSLEE
Sbjct: 541 KSAASMLSGKRPAPAAAANKKAAPTKSGVSKKGDGAGRAESSRAIEPPEDVEPAEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IE+RLGSLI ADTV QLKSAVWKERLEAISS + QVE +QNLDQSVEIL+RL+C +PGW+
Sbjct: 601 IETRLGSLIQADTVSQLKSAVWKERLEAISSFKLQVEGLQNLDQSVEILIRLLCAIPGWN 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV
Sbjct: 661 EKNVQVQQQVIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGF+F+RLYKIMK+HKNPKVLSEGI+WMVSA++DFGVSHLKLKDLIDFCKDTGLQSS A
Sbjct: 721 GPGFVFDRLYKIMKEHKNPKVLSEGIIWMVSAIDDFGVSHLKLKDLIDFCKDTGLQSSVA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
A+RNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY+KNPFEG + PKKTVR SE
Sbjct: 781 ASRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYDKNPFEGASAAPKKTVRTSE 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
STSSVS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP G
Sbjct: 841 STSSVSGGGLDSLPREDISGKITPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPTG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRLYDSNKNL+M L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
RECTL LD+W+AAVHLDKMVPY+T AL + KLGAEGRKDLFDWLSKQL+G S F DA H
Sbjct: 961 RECTLNTLDSWVAAVHLDKMVPYITAALIETKLGAEGRKDLFDWLSKQLSGSSEFSDAIH 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKAAEACI EILR GQE IEKNLKDIQGPALAL+LER++ G
Sbjct: 1021 LLKPASSAMTDKSSDVRKAAEACISEILRVCGQEMIEKNLKDIQGPALALVLERVRPAGG 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q +SMGP+SK+S KV K+ASNG+SKH NR+IS+RVIP KG++PE MS
Sbjct: 1081 FQGLSFESFESTKTISMGPSSKTSVKVGKAASNGISKHANRSISARVIPMKGSKPEPTMS 1140
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
QD AVQSQALLNVKDSNKEDRERMVVRRFKFE+PR+EQ+Q+LE+DMMKYFREDL+RRLL
Sbjct: 1141 FQDRAVQSQALLNVKDSNKEDRERMVVRRFKFEEPRMEQVQDLESDMMKYFREDLNRRLL 1200
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEML KALPSI K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLP+LFD
Sbjct: 1201 SPDFKKQVDGLEMLHKALPSIGKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPDLFD 1260
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
LRDE Y+L+ESEAA+FLPCL+EK GHNIEKVREKMRELTKQIV YSA K+ PYILEGL
Sbjct: 1261 RLRDEAYTLSESEAAIFLPCLIEKLGHNIEKVREKMRELTKQIVQAYSAAKSFPYILEGL 1320
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYK
Sbjct: 1321 RSKNNRTRIECADLVGFLIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYK 1380
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWR++GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAE
Sbjct: 1381 ILGEDIWRFLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAE 1440
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++SQSVSGP + R+NYG ELH+E +MPRAL SV+GP DWNEALDIISFGSPEQSV
Sbjct: 1441 QSGELSQSVSGPIIARKNYGTQELHMEGHMMPRALVSVNGPADWNEALDIISFGSPEQSV 1500
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVL 1540
EGMKVVCHELAQATND EGS MDELVKDAD+LVSCLANKV++TFDFSLTGASSR+CKYVL
Sbjct: 1501 EGMKVVCHELAQATNDAEGSAMDELVKDADKLVSCLANKVSRTFDFSLTGASSRACKYVL 1560
Query: 1541 NTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN 1600
NTLMQTFQNK LAYAV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN
Sbjct: 1561 NTLMQTFQNKILAYAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN 1620
Query: 1601 ADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDV 1660
ADRTSSFVVLINLLRPLDP+RWPSPAS E+FA RNQ+FSDLVVKCLIKLTKVLQ+TIYDV
Sbjct: 1621 ADRTSSFVVLINLLRPLDPTRWPSPASAETFAIRNQKFSDLVVKCLIKLTKVLQTTIYDV 1680
Query: 1661 DLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID 1720
DLDRILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID
Sbjct: 1681 DLDRILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID 1740
Query: 1721 MKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAA 1780
MKPQPIILAYIDLNLETLAAARMLTST P GQ HWGDSAANN + A +SA+AQLKQELAA
Sbjct: 1741 MKPQPIILAYIDLNLETLAAARMLTSTAPVGQNHWGDSAANNSSPAAHSAEAQLKQELAA 1800
Query: 1781 IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGR 1840
IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKN AAGR
Sbjct: 1801 IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNTAAGR 1860
Query: 1841 TPSSVPMATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRI 1900
TPSS+P++TPPP+AL VSSP+ PLSPVHTNS+NDAK ++VK E TNF+LPPSY EDNR
Sbjct: 1861 TPSSLPISTPPPSALNVSSPDLQPLSPVHTNSLNDAKPLHVKPETTNFHLPPSYAEDNRA 1920
Query: 1901 GGAIASKVLPPENPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLIN 1958
A S+ L EN L DQRNE+ GVTSGTLDAIRERMKSMQLAAA GNPD G+RPL++
Sbjct: 1921 VSAFLSRGLVSENSLGDQRNEKLIGGVTSGTLDAIRERMKSMQLAAATGNPDSGSRPLMS 1980
Query: 1959 MNDNVNNGLSSQS-RSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2013
MN+N+NNGLSSQ R+ D +ENP VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1981 MNENLNNGLSSQILRAPDSTGMENPLHSGVLPMDEKALSGLQARMERLKSGSLEPL 2036
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115548|ref|XP_002317062.1| microtubule organization protein [Populus trichocarpa] gi|222860127|gb|EEE97674.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3463 bits (8979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1702/2029 (83%), Positives = 1847/2029 (91%), Gaps = 20/2029 (0%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLA+LC SI DPKD+R+RE PLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLASLCVSIFDPKDSRLREFAPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAV+ FLD MEKAIKNKV+KAVVPAIDVMFQALSEFGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVEAFLDAMEKAIKNKVSKAVVPAIDVMFQALSEFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+IL EKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILLEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE GPG SEE D P EIDEY+L+DPVDIL+PLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEPEGVSEVAGPGQSEEVAPDAPQEIDEYDLMDPVDILSPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR+HF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRSHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV--VEDVKTSVKNKVPL 418
SGSSRFLLPVLLEKLKEKKPT+ ESLTQTLQAMHKAGC NL D+ VE VKT+VKNKVPL
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTESLTQTLQAMHKAGCSNLADIFAVEYVKTAVKNKVPL 420
Query: 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
VRSLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFSVLAA+AK VGM
Sbjct: 421 VRSLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSVLAAVAKMVGM 480
Query: 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538
RPLERS+EKLDDVRR KLSEMIAGSG VA +S VQT+ GS+ SVE SESSFV+KSA
Sbjct: 481 RPLERSLEKLDDVRRKKLSEMIAGSGDGVAAVATSGTVQTARGSMSSVETSESSFVKKSA 540
Query: 539 ASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIES 596
ASMLSGK+P AAPA+KK P K A K DG+G+ ETS+ E PEDVEP+EMSLEEIE+
Sbjct: 541 ASMLSGKKPAPAAPANKKAAPTKSGASKKVDGAGRPETSRALEPPEDVEPAEMSLEEIET 600
Query: 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKN 656
RLGSLI ADT+ QLKSAVWKERLEAISSL++QVE +QN +QSVEIL+RL+C +PGW+EKN
Sbjct: 601 RLGSLIQADTISQLKSAVWKERLEAISSLKEQVEGLQNCNQSVEILIRLLCAIPGWNEKN 660
Query: 657 VQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG 716
VQVQQQ IEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRA+AMKCLTTF+EAVGPG
Sbjct: 661 VQVQQQFIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAYAMKCLTTFTEAVGPG 720
Query: 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
F+F+RLYKIMK+HKNPKVLSEGILWMV A++DFGVSHLKLKDLIDFCKDTGLQSS AA+R
Sbjct: 721 FVFDRLYKIMKEHKNPKVLSEGILWMVLAIDDFGVSHLKLKDLIDFCKDTGLQSSVAASR 780
Query: 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTS 835
NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG + +PKKTVR SES +
Sbjct: 781 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGASAIPKKTVRTSESMT 840
Query: 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895
VS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP GTGE
Sbjct: 841 CVSGGGLDSLPREDISGKVTPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPNGTGE 900
Query: 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955
LFG LRGRLYDSNKNL+M L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC
Sbjct: 901 LFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 960
Query: 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015
L LD+W+AAVHLDKM+PY+T AL ++KLGAEGRKDLFDWLSKQL+GLS FPDA HLLK
Sbjct: 961 ALNTLDSWVAAVHLDKMIPYITAALFESKLGAEGRKDLFDWLSKQLSGLSEFPDAIHLLK 1020
Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ- 1074
PA AMTDKS+DVRKAAEACI EILR GQE IE+NLKDI GPALAL+LER++ Q
Sbjct: 1021 PAGSAMTDKSADVRKAAEACISEILRVCGQEMIERNLKDIHGPALALVLERVRPASVYQE 1080
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
+SMGP+SK+SSKV K+ASNG+SKH NR+ISSRVIPTKG++PE MS+QD AVQ
Sbjct: 1081 SFESTKTISMGPSSKTSSKVGKAASNGISKHSNRSISSRVIPTKGSKPEPAMSIQDRAVQ 1140
Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
SQALLNVKDSNKEDRERMVVRRFKFE+PR+EQIQ+LE DMMKY REDL+RRLLS DFKKQ
Sbjct: 1141 SQALLNVKDSNKEDRERMVVRRFKFEEPRMEQIQDLEGDMMKYLREDLNRRLLSLDFKKQ 1200
Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
VDGLEMLQKALPSI +IIEVLDILL+WFVLQFCKSNTTCLLKVLEFLP LFD LRDE Y
Sbjct: 1201 VDGLEMLQKALPSIGNEIIEVLDILLKWFVLQFCKSNTTCLLKVLEFLPALFDLLRDEAY 1260
Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
+L+ESEAA+FLPCL+EK GHNIEKVREKMREL KQI++ YSATK+ PYILEGLRSKNNRT
Sbjct: 1261 TLSESEAAIFLPCLIEKLGHNIEKVREKMRELAKQILHAYSATKSFPYILEGLRSKNNRT 1320
Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
RIEC DLVGFLID HGAEISGQLKSLQIVASLTAERDGEIRKAALN LATGYKILGEDIW
Sbjct: 1321 RIECADLVGFLIDQHGAEISGQLKSLQIVASLTAERDGEIRKAALNALATGYKILGEDIW 1380
Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
RY+GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAEQSG+VSQ
Sbjct: 1381 RYLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAEQSGEVSQ 1440
Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
SVSGP L R+N+G EL VER IMPRAL S SGPTDWNEALDIISF SPEQSVEGMKVVC
Sbjct: 1441 SVSGPILARKNFGTQELQVERHIMPRALTSASGPTDWNEALDIISFSSPEQSVEGMKVVC 1500
Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
HELAQAT+D EGSVMDELVKDADRLVSCLANKVA+TFDFSLTGASSRSCKYVLNTLMQTF
Sbjct: 1501 HELAQATSDEEGSVMDELVKDADRLVSCLANKVARTFDFSLTGASSRSCKYVLNTLMQTF 1560
Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1607
QNK LA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF
Sbjct: 1561 QNKTLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1620
Query: 1608 VVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1667
VLINLLRPLDPSRWPSPAS E+FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRIL+
Sbjct: 1621 DVLINLLRPLDPSRWPSPASTETFAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILR 1680
Query: 1668 SIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPII 1727
SIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGA+IKGHLSMVPIDMKPQPII
Sbjct: 1681 SIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGASIKGHLSMVPIDMKPQPII 1740
Query: 1728 LAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGD 1787
LAYIDLNLETLAAARMLTST P GQ HWGDSAANN + AT+SA+AQLKQELAAIFKKIGD
Sbjct: 1741 LAYIDLNLETLAAARMLTSTAPVGQNHWGDSAANNSSPATHSAEAQLKQELAAIFKKIGD 1800
Query: 1788 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1847
KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKN AAGRTPSS+PM
Sbjct: 1801 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNTAAGRTPSSLPM 1860
Query: 1848 ATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASK 1907
+TPPP+A VSSP+ PLSPVHTNS+ND+K ++ K E TNF+LPPSY+ED GAI S+
Sbjct: 1861 STPPPSAPNVSSPDLQPLSPVHTNSLNDSKPLHAKPEATNFHLPPSYSED----GAILSR 1916
Query: 1908 VLPPENPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNN 1965
EN L DQRNE+ GVTSGTLDAIRERMKSMQLAA AG PD G+RPL+++NDN+NN
Sbjct: 1917 GFVSENSLGDQRNEKLISGVTSGTLDAIRERMKSMQLAATAGLPDSGSRPLMSVNDNLNN 1976
Query: 1966 GLSSQS-RSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2013
GLSS + D A +ENP G VLP+DEKALSGLQARMERLKSG++EPL
Sbjct: 1977 GLSSLILHAPDSAGMENPVLGGVLPLDEKALSGLQARMERLKSGSLEPL 2025
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533943|ref|XP_003535517.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3348 bits (8680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1667/2040 (81%), Positives = 1815/2040 (88%), Gaps = 32/2040 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIAYL+AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW
Sbjct: 61 VADSNAPVQEKALDALIAYLRAADADASRYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAVD FLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 IELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKD VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE QE +SE VGPGP EES D P EIDEYELVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEQEAVSEVVGPGPCEESGNDAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRI+PGDF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
S SSRFLLPVLLEKLKEKKP +AE+L QTLQAMHKAGC++L+D+VE VKT+ KNK
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALAEALMQTLQAMHKAGCISLIDIVEGRFPPYVKTATKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTL WVTFCIETS+K + KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKS
Sbjct: 421 VPLVRSLTLTWVTFCIETSNKVVITKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMI+GS V +S+A VQ + S S E SES V+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAETSESVLVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVK--PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593
+SAA MLSGKRPV + PA KK G VK + K DG + + K E PEDVEP+EMSLEE
Sbjct: 541 RSAAGMLSGKRPVQSVPAVKKVGVVKLGTNKKTDGVPQVKALKSVEPPEDVEPTEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IESR+GSLI +DT+ LKSAVWKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGW
Sbjct: 601 IESRIGSLIESDTITLLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWG 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI ++++TATKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAV
Sbjct: 661 EKNVQVQQQVIEVITHISSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGFIFERLYKIMK+HKNPKVLSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS A
Sbjct: 721 GPGFIFERLYKIMKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
ATRNA+IK LG LH+FVGPDIKGFL DVKPALLSALD EYEKNPFEG + V K+TVRA +
Sbjct: 781 ATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRAKD 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
S+S+V +GG D LPREDISGK +PTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ G
Sbjct: 841 SSSTVVAGGLDSLPREDISGKISPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRL DSNKN+VMA+L +G VASAMG AVEK+SKG+LSDILKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLLDSNKNIVMASLTAIGNVASAMGQAVEKASKGILSDILKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
REC L LDAWLAAVHLDKMVPY+ AL D+KLGAEGRKDLFDWLS+QL+GLS F +AA
Sbjct: 961 RECVLNTLDAWLAAVHLDKMVPYIAIALMDSKLGAEGRKDLFDWLSRQLSGLSSFAEAAQ 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKA+EACI EILR G E IEK +KDI GPAL LI+E++K GA
Sbjct: 1021 LLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLIVEKLKPYGA 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q VS+G SK +K KS +NGVSKHGNRA+SSRV+ TKGA+ ESI S
Sbjct: 1081 FQGTFFESFESGRAVSVGAISK--AKAGKSTANGVSKHGNRAVSSRVVATKGAKSESI-S 1137
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
VQD AVQSQALLN+KDSNKEDRERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLL
Sbjct: 1138 VQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLL 1197
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL D
Sbjct: 1198 SADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLD 1257
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
TL+DEGYSLTESE AVFLPCLVEK GHNIEKVREKMRELTKQ V YSA K PYILEGL
Sbjct: 1258 TLKDEGYSLTESEGAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSACKCFPYILEGL 1317
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGF+IDHHGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYK
Sbjct: 1318 RSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYK 1377
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARA RRSVRENGSD+AE
Sbjct: 1378 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAISRRSVRENGSDVAE 1437
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++++S++GP ++R+NYG + +++R +MPR + SGPTDWNEALDIISFGSPEQSV
Sbjct: 1438 QSGEMTRSLAGP-ILRKNYGQPDSNIDRQLMPRPMTVASGPTDWNEALDIISFGSPEQSV 1496
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLT-GASSRSCKYV 1539
+GMKV+CHELAQAT+DPEGS MDELVKDADRLVSCLANKVA+TFDFSLT GASSRSCKYV
Sbjct: 1497 DGMKVICHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYV 1556
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILD 1599
LNTLMQTFQNKRLA+AV+ESTLDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKILD
Sbjct: 1557 LNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILD 1616
Query: 1600 NADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYD 1659
NADRTSSFVVLINLLRPLD SRWPSPASNES A+RNQ+FSDLVVKCLIKLTKVLQSTIYD
Sbjct: 1617 NADRTSSFVVLINLLRPLDSSRWPSPASNESLASRNQKFSDLVVKCLIKLTKVLQSTIYD 1676
Query: 1660 VDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1719
VDLDRILQSIH+YLQ+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI
Sbjct: 1677 VDLDRILQSIHLYLQDLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1736
Query: 1720 DMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELA 1779
D KPQPIILAYI+LNLETLAAARMLT++GPGGQ HWGDSA NN S T+SADAQLKQELA
Sbjct: 1737 DAKPQPIILAYIELNLETLAAARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELA 1796
Query: 1780 AIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1839
AIFKKIG+KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG
Sbjct: 1797 AIFKKIGEKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1856
Query: 1840 RTPSSVPMATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPP-SYTEDN 1898
RTPSS+PM TPPPA+L +SSP+FAPLSPV+ N + DAK +NVK EPTNFNLPP SY E+N
Sbjct: 1857 RTPSSLPMPTPPPASLNISSPDFAPLSPVNANPLGDAK-LNVKPEPTNFNLPPSSYNEEN 1915
Query: 1899 RIGGAIASKVLPPENPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPL 1956
R AI S+ L + L DQRN+RF GVTSGTLDAIRERMKSMQLAAAAG+ + G R L
Sbjct: 1916 RAVNAITSRALNSDYTLGDQRNDRFMTGVTSGTLDAIRERMKSMQLAAAAGSTESGGRHL 1975
Query: 1957 INMNDNVNNGLSSQSR---SSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2013
+ NDN N GL S+ +S+ EN G VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1976 TSANDNFNQGLPPPSQIPHASEHVGTENTMHGGVLPMDEKALSGLQARMERLKSGSLEPL 2035
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574625|ref|XP_003555446.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3328 bits (8630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1668/2040 (81%), Positives = 1821/2040 (89%), Gaps = 32/2040 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
V DSNAPVQ+KALDALIAYL+AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW
Sbjct: 61 VTDSNAPVQEKALDALIAYLRAADADAARYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAVD FLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 IELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKD VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE QE +SE VGPGPSEES D P EIDEYELVDPVDIL PLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEQEAVSEVVGPGPSEESGNDAPQEIDEYELVDPVDILIPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRI+PGDF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
S SSRFLLPVLLEKLKEKKP +AE+LTQTLQAMHKAGC++L+D+VE VKT+ KNK
Sbjct: 361 SSSSRFLLPVLLEKLKEKKPALAEALTQTLQAMHKAGCISLIDIVEGRFPSYVKTATKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTL WVTFCIETS+K ++KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKS
Sbjct: 421 VPLVRSLTLTWVTFCIETSNKGVIMKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMI+GS V +S+A VQ + S S E+SES+FV+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAESSESAFVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEE 593
+SAA MLSGKRPV + P +KKGG VK K DG + + SK E PEDVEP+EMSLEE
Sbjct: 541 RSAAGMLSGKRPVQSVPVAKKGGVVKSGTNKKTDGVPQVKASKSVEPPEDVEPTEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IESR+GSLI +DT+ QLKSAVWKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGWS
Sbjct: 601 IESRIGSLIQSDTITQLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWS 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI ++ +TATKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAV
Sbjct: 661 EKNVQVQQQVIEVITHIGSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGFIFERLYKI+K+HKNPKVLSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS A
Sbjct: 721 GPGFIFERLYKILKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
ATRNA+IK LG LH+FVGPDIKGFL DVKPALLSALD EYEKNPFEG + V K+TVRAS+
Sbjct: 781 ATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRASD 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
S+S+ +GG D LPREDISGK TPTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ G
Sbjct: 841 SSSTAVAGGLDSLPREDISGKITPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRL DSNKN+VMA+L T+G VASAMG AVEK+SKG+LSD+LKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLVDSNKNIVMASLTTIGNVASAMGQAVEKASKGILSDVLKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
REC L LDAWLAAVHLDKMV Y+ AL D+KLGAEGRKDLFDWLSKQL+ LS F +AA
Sbjct: 961 RECVLNTLDAWLAAVHLDKMVSYIAIALMDSKLGAEGRKDLFDWLSKQLSELSSFAEAAQ 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKA+EACI EILR G E IEK +KDI GPAL L+LE++K GA
Sbjct: 1021 LLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLVLEKLKPYGA 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q VS+G TSK +K KS +NGVSKHGNRA+SSRV+ TKG + ESI S
Sbjct: 1081 FQGTFFESFESGRAVSVGATSK--AKAGKSTANGVSKHGNRAVSSRVVATKGTKSESI-S 1137
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
VQD AVQSQALLN+KDSNKEDRERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLL
Sbjct: 1138 VQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLL 1197
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL D
Sbjct: 1198 SADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLD 1257
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
TL+DEGYSLTESE AVFLPCLVEK GHNIEKVREKMRELTKQ V YSA+K PYILEGL
Sbjct: 1258 TLKDEGYSLTESEVAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSASKCFPYILEGL 1317
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGF+IDHHGAEISGQLKSLQIVASLTAERDGE RKAALN LATGYK
Sbjct: 1318 RSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNALATGYK 1377
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARA LRRSVRENGSD+AE
Sbjct: 1378 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARANLRRSVRENGSDVAE 1437
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++++S++GP ++R+NY + +++R +MP + SGPTDWNEALDIISFGSPEQSV
Sbjct: 1438 QSGEMARSLTGP-MLRKNYAQPDSNIDRQLMPHPMTVASGPTDWNEALDIISFGSPEQSV 1496
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLT-GASSRSCKYV 1539
+GMKVVCHELAQAT+DPEGS MDELVKDADRLVSCLANKVA+TFDFSLT GASSRSCKYV
Sbjct: 1497 DGMKVVCHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYV 1556
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILD 1599
LNTLMQTFQNKRLA+AV+ESTLDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKILD
Sbjct: 1557 LNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILD 1616
Query: 1600 NADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYD 1659
NADRTSSFVVLINLLRPLD SRWPSPA NES A+RNQ+FSDLVVKCLIKLTKVLQSTIYD
Sbjct: 1617 NADRTSSFVVLINLLRPLDSSRWPSPALNESLASRNQKFSDLVVKCLIKLTKVLQSTIYD 1676
Query: 1660 VDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1719
VDLDRILQSIH+YLQ+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI
Sbjct: 1677 VDLDRILQSIHLYLQDLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1736
Query: 1720 DMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELA 1779
D KPQPIILAYI+LNLETLAAARMLT++GPGGQ HWGDSA NN S T+SADAQLKQELA
Sbjct: 1737 DAKPQPIILAYIELNLETLAAARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELA 1796
Query: 1780 AIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1839
AIFKKIG+KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG
Sbjct: 1797 AIFKKIGEKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1856
Query: 1840 RTPSSVPMATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPP-SYTEDN 1898
RTPSS+PM TPPPA+L +SSP+FAPLSPV+TN + DAK +NVK +PTNFNLPP SY E+N
Sbjct: 1857 RTPSSLPMPTPPPASLNISSPDFAPLSPVNTNPLGDAK-LNVKPDPTNFNLPPSSYNEEN 1915
Query: 1899 RIGGAIASKVLPPENPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPL 1956
R AI S+ L + L DQRN+RF GVTSGTLDAIRERMKSMQLAAAAG+ + G R L
Sbjct: 1916 RAVNAITSRALNSDYTLGDQRNDRFMTGVTSGTLDAIRERMKSMQLAAAAGSTESGGRHL 1975
Query: 1957 INMNDNVNNGLSSQSR---SSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2013
+ NDN+N+GL S+ +S+ EN G VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1976 TSANDNLNHGLPPPSQIPHASEHVGTENTMHGGVLPMDEKALSGLQARMERLKSGSLEPL 2035
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19912731|dbj|BAB88648.1| microtubule bundling polypeptide TMBP200 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 3259 bits (8451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1601/2031 (78%), Positives = 1806/2031 (88%), Gaps = 23/2031 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSE+EKLLKEAKKLPW++R HKNWKVRN+ANIDLAA+CDSITDPKD R+RE GPLF+KT
Sbjct: 1 MSEDEKLLKEAKKLPWDERFAHKNWKVRNDANIDLAAVCDSITDPKDPRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALI YLKAADADAGRYAKEVCDA+ KCLTGRPKTVEKAQ VF+LW
Sbjct: 61 VADSNAPVQEKALDALICYLKAADADAGRYAKEVCDAVVVKCLTGRPKTVEKAQMVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAV+ FLD MEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ
Sbjct: 121 IELEAVEAFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWI K+ VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWISKETVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E++S+ V GPSEES ADVP IDEY+LVDPVDIL PLEK+GFWEGVKA KWS
Sbjct: 241 QDKEPELEVVSDAVAAGPSEESAADVPQRIDEYDLVDPVDILIPLEKTGFWEGVKAAKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTK+IAPGDF E+CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKKIAPGDFAEICRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
SGSSRFLLPVLLEKLKEKKPT+ ++LTQTLQAMHK+GCL L D+VEDVKT+ KNKVPLVR
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTDALTQTLQAMHKSGCLILTDIVEDVKTATKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
SLTLNWVTFCIETS+KA +LK HK+YVPICME LNDGTPEVRDAAFS LAA+AKSVGMRP
Sbjct: 421 SLTLNWVTFCIETSNKAVILKAHKEYVPICMESLNDGTPEVRDAAFSALAAVAKSVGMRP 480
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
LE+S+EKLDDVR+ KLSEMI GSGGD + +SS V +SGG + S +AS S V++SAAS
Sbjct: 481 LEKSLEKLDDVRKKKLSEMIGGSGGDPVSTSSSGAVPSSGGIMSSTQASTGSLVKRSAAS 540
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
MLSGK+PV AAP SKKG K K DG+ + + SK E EDVEP+EMSLEEIES+L
Sbjct: 541 MLSGKKPVQAAPPSKKGASAKSGTNKRGDGATQLKASKPVEV-EDVEPAEMSLEEIESKL 599
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
GSLI +T+ QLKSAVWKERLEAISS ++QVEA++ LD SVEILVRL+C +PGWSEKNVQ
Sbjct: 600 GSLIQPETITQLKSAVWKERLEAISSFKEQVEALKELDPSVEILVRLLCAVPGWSEKNVQ 659
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQ VI++IN++A+TA+K+PKKCVVLCL G+SERVADIKTRA AMKCLTTF EAVGPGF+
Sbjct: 660 VQQLVIDIINHIASTASKYPKKCVVLCLQGVSERVADIKTRAQAMKCLTTFCEAVGPGFV 719
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMV+AV+DFGVSHLKLKDLIDFCKDTGLQSSAAATRNA
Sbjct: 720 FERLYKIMKEHKNPKVLSEGILWMVTAVDDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 779
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSV 837
TIKL+GALHKFVGPDIKGFL+DVKPAL+SALDAEY+KNPFEG +V PKKTV+ S++ S+
Sbjct: 780 TIKLIGALHKFVGPDIKGFLSDVKPALISALDAEYDKNPFEGASVAPKKTVKTSDA-PSL 838
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSGG D LPREDISGK TP L+K LES DWK RLESIE VNKILEEANKRIQP GTGELF
Sbjct: 839 SSGGLDSLPREDISGKITPALLKGLESSDWKARLESIETVNKILEEANKRIQPTGTGELF 898
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
G LRGRL SNKNLV+ATL T+G VASAMGPAVEKSSKG+LSDILKCLGDNKKHMRECTL
Sbjct: 899 GALRGRLCYSNKNLVIATLSTVGGVASAMGPAVEKSSKGILSDILKCLGDNKKHMRECTL 958
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
LD+WLAAVHLDKMVPY+T ALTDAKLGAEGRKDLFDWLSKQLTG+ FPDA HLLKP
Sbjct: 959 NTLDSWLAAVHLDKMVPYITGALTDAKLGAEGRKDLFDWLSKQLTGMKEFPDAVHLLKPV 1018
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ AMTDKS+DVRKAAEAC E+LR GQE + KNLKDIQGPALA+++ER++ G Q
Sbjct: 1019 ASAMTDKSADVRKAAEACFGELLRVCGQEMVSKNLKDIQGPALAIVVERLRPYGVLQETF 1078
Query: 1075 -----VSMGPTSKSSSKVPKSA--SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
S G TSK SK+ KS + S+HGNRA +SR IPT+ +R E++MSVQD +VQ
Sbjct: 1079 DLGRTSSTGTTSKVGSKIGKSTGPAERASRHGNRAGASRAIPTRNSRQETLMSVQDISVQ 1138
Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
SQAL+NVKDS+K +RER+VVRRFKFE+PR+EQIQ+LE+D+MKYFREDLHRRLLSTDFKKQ
Sbjct: 1139 SQALINVKDSHKGERERIVVRRFKFEEPRLEQIQDLESDLMKYFREDLHRRLLSTDFKKQ 1198
Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
VDG+EMLQKALPSI K++IEVLDI+LRWFVL+FC+SNT+CLLKVLEFLPELF+ LR+EGY
Sbjct: 1199 VDGIEMLQKALPSIAKELIEVLDIVLRWFVLRFCESNTSCLLKVLEFLPELFEMLRNEGY 1258
Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
+TE+EAA+FLPCLVEKSGHNIEKVREKMRELTKQI++ YSA KT PYILEGLRS++NRT
Sbjct: 1259 MMTEAEAAIFLPCLVEKSGHNIEKVREKMRELTKQIIHAYSAAKTFPYILEGLRSRSNRT 1318
Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
RIEC DLVG+L+D+H AEI GQLKSL+ VA+LTAERDGE RKAALNTLATGYKILG+DIW
Sbjct: 1319 RIECADLVGYLLDNHEAEIGGQLKSLKDVANLTAERDGETRKAALNTLATGYKILGDDIW 1378
Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
+Y+GKLT+AQ+SMLDDRFKWK REM+K++EG+PGEARAALRRSVR+NG+DIAE SG+VS+
Sbjct: 1379 KYLGKLTEAQRSMLDDRFKWKAREMDKRREGRPGEARAALRRSVRDNGTDIAEPSGEVSR 1438
Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
S++GP L R Y ++E +ER + R ++ GP+DWNEALDII+ SPEQSVEGMKVVC
Sbjct: 1439 SLAGPILNRDIYNNTEFPMERIVNLRPVSGTMGPSDWNEALDIIASDSPEQSVEGMKVVC 1498
Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
H LA ATNDPEGS MD++VKDAD+LVSCLANKVA+TFDFSL GASSRSCKYVLNTLMQTF
Sbjct: 1499 HLLAVATNDPEGSAMDDIVKDADKLVSCLANKVARTFDFSLMGASSRSCKYVLNTLMQTF 1558
Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1607
QN+ LA+AV+ESTLD LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNADRTSSF
Sbjct: 1559 QNRTLAHAVRESTLDILITELLLWLLDERVPRMDDGSQLLKALNVLMLKILDNADRTSSF 1618
Query: 1608 VVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1667
VVLI LLRPLDPSRWPSPA++ES RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQ
Sbjct: 1619 VVLIKLLRPLDPSRWPSPATDESLVIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1678
Query: 1668 SIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPII 1727
SIH+YLQELGM+EIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPIDM+P PII
Sbjct: 1679 SIHIYLQELGMDEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDMQPPPII 1738
Query: 1728 LAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGD 1787
LAYIDLNL+TLAAARMLT + P GQTHWGDSAANNP AT++ADAQLKQELAAIFKKIGD
Sbjct: 1739 LAYIDLNLQTLAAARMLTPSVP-GQTHWGDSAANNPAPATHNADAQLKQELAAIFKKIGD 1797
Query: 1788 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1847
KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM
Sbjct: 1798 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1857
Query: 1848 ATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASK 1907
+TPPP++L +SSP+F LSPV+TN +NDAKS+N K EP+ F+LPPSY ED+R G A+ S+
Sbjct: 1858 STPPPSSLNLSSPKFGKLSPVNTNPLNDAKSVNNKVEPSQFSLPPSYGEDDRGGNALLSR 1917
Query: 1908 VLPPE-----NPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMN 1960
L E + L +QRN+R GVTSGTL+AIRERMKSM LAA GNPDP +R L++MN
Sbjct: 1918 GLSSEHLELRHQLGEQRNDRLPSGVTSGTLEAIRERMKSMSLAATGGNPDPSSRTLMSMN 1977
Query: 1961 DNVNNGLSSQSRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIE 2011
NV++ +S+Q+ + +S+EN Q VLPMDEKALSGLQARMERLKSG++E
Sbjct: 1978 GNVSHMVSTQAPGIEHSSIENSIQSGVLPMDEKALSGLQARMERLKSGSME 2028
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434204|ref|XP_004134886.1| PREDICTED: protein MOR1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3226 bits (8365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1605/2031 (79%), Positives = 1786/2031 (87%), Gaps = 44/2031 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLAA+CDSITDPKD+R+RE GPLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLSHKNWKVRNEANIDLAAVCDSITDPKDSRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIAYL+AADADAGR+AKE CDAI AKCLTGRPKTVEKAQAVFMLW
Sbjct: 61 VADSNAPVQEKALDALIAYLRAADADAGRFAKETCDAIVAKCLTGRPKTVEKAQAVFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEA DVFLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAADVFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV+G+ARP+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVTGSARPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE +E SE VG GPSEES ADVP EIDEY+LVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEKEDTSEAVGTGPSEESVADVPQEIDEYDLVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAEL+KLAST++IAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNL+RGLR +F
Sbjct: 301 ERKEAVAELSKLASTRKIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLSRGLRANF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
S SSRFLLPVLLEKLKEKKP + ESLTQTLQAMHKAGCL+L DV+EDVKT+ KNKVPLVR
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALMESLTQTLQAMHKAGCLSLSDVIEDVKTASKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
S TL+WVTFCIETS+KA +LKVHK+YVPI ME LNDGTPEVRDAAF LAA+AK
Sbjct: 421 SSTLSWVTFCIETSNKAVILKVHKEYVPIFMESLNDGTPEVRDAAFLALAAVAK------ 474
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
IE L + ++ + + V S+ FV+KSAAS
Sbjct: 475 ----IESLSLSLSSGFGMLVPIYFAFIVN-----------NQLDLVLDSDGLFVKKSAAS 519
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGK------QETSKLTEAPEDVEPSEMSLEEI 594
MLSGKRP AAP+SKKG K K G ++SK E PEDVEP+EMSLEE+
Sbjct: 520 MLSGKRPAQAAPSSKKGNLAKSGTNKKADGSVPSGAPPKSSKPIEVPEDVEPAEMSLEEV 579
Query: 595 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 654
ES+LGSLI ADTV QLKS VWKERLEAISSL+QQVE +++L+ SVEILVRL+C++PGWSE
Sbjct: 580 ESKLGSLIEADTVSQLKSTVWKERLEAISSLKQQVEGLEDLNPSVEILVRLLCIIPGWSE 639
Query: 655 KNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG 714
KNVQVQQQVIEVI Y+A+TA KFPKKC+VLCL GISERVADIKTR AMKCLTTFSEAVG
Sbjct: 640 KNVQVQQQVIEVITYIASTAKKFPKKCIVLCLSGISERVADIKTRVQAMKCLTTFSEAVG 699
Query: 715 PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAA 774
PGFIFERL+KIMK+HKNPKVLSEG+LWMVSAVEDFG+S LKLKDLIDFCK+TGLQSSAAA
Sbjct: 700 PGFIFERLFKIMKEHKNPKVLSEGLLWMVSAVEDFGISLLKLKDLIDFCKETGLQSSAAA 759
Query: 775 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT-VVPKKTVRASES 833
TRN TIKLLG +HKFVGPD+KGFL+DVKPALL+A+D E+EKNPFEGT PK+TVRA E
Sbjct: 760 TRNVTIKLLGCVHKFVGPDLKGFLSDVKPALLTAIDTEFEKNPFEGTAAAPKRTVRAEEL 819
Query: 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT 893
TSS S G+DGLPREDISGK TPTL+K+ ESPDWKVRLESIEAVNK+LEEANKRIQP GT
Sbjct: 820 TSSTSVSGTDGLPREDISGKITPTLLKNFESPDWKVRLESIEAVNKMLEEANKRIQPTGT 879
Query: 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 953
+L G LRGRLYDSNKNLVMATL T+G VASAMGP+VEKS KGVLSD+LKCLGDNKKHMR
Sbjct: 880 SDLLGALRGRLYDSNKNLVMATLATIGNVASAMGPSVEKSGKGVLSDVLKCLGDNKKHMR 939
Query: 954 ECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013
E TLT LDAWLAAVH DKM+PY+ AL D K+ AEGRKDL +WLS++L+G++ DA L
Sbjct: 940 EATLTALDAWLAAVHFDKMIPYMILALVDNKVSAEGRKDLLEWLSRKLSGINDSSDAIQL 999
Query: 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK----- 1068
LKPA A+TDKSSDVRKAAE+CI EILR G QE +EK +KDI GP L+L+LER++
Sbjct: 1000 LKPACSALTDKSSDVRKAAESCITEILRVGRQEAVEKVVKDISGPGLSLVLERLRPYGAL 1059
Query: 1069 ---LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
+ A QV+ SK++ KV K+ SNGV+KHGN+AISSR +KG R ES++S D A
Sbjct: 1060 QESFDSAKQVTSSLPSKNAIKVGKATSNGVAKHGNKAISSRGTISKGNRTESLISAHDLA 1119
Query: 1126 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFK 1185
VQSQALLNVKDSNKE+RER++VR+FKFE+PRIEQIQ+LENDMMKYFREDL RR+LSTDFK
Sbjct: 1120 VQSQALLNVKDSNKEERERIIVRKFKFEEPRIEQIQDLENDMMKYFREDLQRRMLSTDFK 1179
Query: 1186 KQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDE 1245
KQVDG+EMLQKAL SI KD+IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+ L+DE
Sbjct: 1180 KQVDGIEMLQKALASIGKDVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFEILKDE 1239
Query: 1246 GYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNN 1305
GY + ESEAA+FLPCL+EK GHNIEKV+EKMRELTKQI+ YSATK PYILEGLRSKNN
Sbjct: 1240 GYCINESEAAIFLPCLIEKLGHNIEKVKEKMRELTKQIIQAYSATKMFPYILEGLRSKNN 1299
Query: 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGED 1365
RTRIEC DL+GFLID++G+EISGQL+SLQ+VASLTAERDGEIRKAALNTLATGYKILGE+
Sbjct: 1300 RTRIECADLIGFLIDNYGSEISGQLRSLQLVASLTAERDGEIRKAALNTLATGYKILGEE 1359
Query: 1366 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1425
+WRYVGKLTDAQ+SMLDDRFKWKVREMEKKKEGKPGEARAA+RR +RE S++AEQSG+V
Sbjct: 1360 VWRYVGKLTDAQRSMLDDRFKWKVREMEKKKEGKPGEARAAMRRPLREYESEVAEQSGEV 1419
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKV 1485
S+S+SG R+NYG SELH+ER +P+ L + +GPTDWNEA+DIISFGSPEQSVEGMKV
Sbjct: 1420 SRSMSGTISTRKNYG-SELHMERQSVPQPLTTANGPTDWNEAMDIISFGSPEQSVEGMKV 1478
Query: 1486 VCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQ 1545
VCHELAQA++DPEGS MDEL +DADRLV CLA KVAKTFD+SLTGASSRSCKYVLNTLMQ
Sbjct: 1479 VCHELAQASSDPEGSSMDELARDADRLVLCLATKVAKTFDYSLTGASSRSCKYVLNTLMQ 1538
Query: 1546 TFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS 1605
TFQNKRLAYAV+E TLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS
Sbjct: 1539 TFQNKRLAYAVKEKTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS 1598
Query: 1606 SFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRI 1665
SFVVLINLLRPL+PSRWPS S ESFA+RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRI
Sbjct: 1599 SFVVLINLLRPLEPSRWPSTGSKESFASRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRI 1658
Query: 1666 LQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP 1725
LQSIH+YLQ LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP
Sbjct: 1659 LQSIHLYLQNLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP 1718
Query: 1726 IILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKI 1785
IILAYIDLNLETLAAARMLTSTGP GQTHWGDS ANN +S T SADAQLKQELAAIFKKI
Sbjct: 1719 IILAYIDLNLETLAAARMLTSTGPAGQTHWGDSTANNASSGTQSADAQLKQELAAIFKKI 1778
Query: 1786 GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSV 1845
GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQME+NAAAGRTPSS+
Sbjct: 1779 GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMERNAAAGRTPSSL 1838
Query: 1846 PMATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIA 1905
P++TPPPA++ SSP+FAPLSPVHTNS+ +AKS+NVK EPTNF LPPSYTEDNRI I
Sbjct: 1839 PLSTPPPASMN-SSPDFAPLSPVHTNSLTEAKSLNVKPEPTNFTLPPSYTEDNRI---IT 1894
Query: 1906 SKVLPPENPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNV 1963
S+ P+ L DQRN+++ GVTSGTLDAIRERMKSMQLAAAAGN + G++PL+++NDN+
Sbjct: 1895 SRGPGPDYSLGDQRNDKYISGVTSGTLDAIRERMKSMQLAAAAGNHESGSKPLMSVNDNL 1954
Query: 1964 NNGLSSQ-SRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2013
+ G+ +Q S+ S+ VEN AQ VLPMDEKALSGLQARMERLKSGTIEPL
Sbjct: 1955 HPGMIAQMSQPSEHIGVENSAQAGVLPMDEKALSGLQARMERLKSGTIEPL 2005
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823359|ref|XP_002879562.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] gi|297325401|gb|EFH55821.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 3083 bits (7992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1550/2019 (76%), Positives = 1739/2019 (86%), Gaps = 52/2019 (2%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA+L DSITDPKD R+R+ G LF+KTV
Sbjct: 3 AEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASLFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIAAKCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIAAKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELTNVSGGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKKP+V E LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKPSVTEPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + SE+SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSEASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +APAS K G KKDGS + E K E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAPASKKVGTGKPGGGKKDGSVRNEGPKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +T+ QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETISQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISSKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIILALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQETIEKNLKDI GPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQETIEKNLKDIHGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK SK+ KS SNG K GNR SR +PTKG++ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVSKISKSTSNGTLKQGNR---SRAVPTKGSQ---ITSVHDIAIQSQALLNT 1134
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQI +LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1135 KDSNKEDRERVVVRRIKFEELRPEQILDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1194
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1195 QKALPSVSKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1254
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQ++ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1255 AIFLPCLAEKLGHNIEKVREKMRELMKQLIQAYSVAKTYPYILEGLRSKNNRTRIECTDL 1314
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L +VASLTAERDGE+RKAALNT+ATGYKILG+DIW+YVGKLT
Sbjct: 1315 IGYLLETCGTEIGGLLKYLNMVASLTAERDGELRKAALNTMATGYKILGDDIWKYVGKLT 1374
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWKV+EMEK++EGKPGEARAALRRSVR+NG ++AEQSGD+SQ V GP
Sbjct: 1375 DAQKSMIDDRFKWKVKEMEKRREGKPGEARAALRRSVRDNGPEVAEQSGDLSQIVPGPLF 1434
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R+NYG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1435 PRQNYGISEQILERNPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1494
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1495 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1554
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1555 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1614
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1615 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1674
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1734
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT IG
Sbjct: 1735 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSKIG 1794
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1795 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1854
Query: 1855 LGVSSPEFAPLSPVHTNSMNDAKS-MNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPEN 1913
L + SP+ LS + DAK MN +S+ YT+D R AS + P
Sbjct: 1855 LALPSPDIPSLSSL------DAKPLMNPRSD--------LYTDDIR-----ASNMNP--- 1892
Query: 1914 PLSDQRNERFGVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQSRS 1973
GV +GTLDAIRERMK+MQL A++G +P ++PL+ NDN++ ++ QS
Sbjct: 1893 ----------GVMTGTLDAIRERMKNMQL-ASSGTLEPVSKPLMPTNDNLS--MNQQSVP 1939
Query: 1974 SDRASVENP-AQGSVLPMDEKALSGLQARMERLKSGTIE 2011
+ E P VLPMDEKALSGLQARMERLK G++E
Sbjct: 1940 QSQMGQETPHTHPVVLPMDEKALSGLQARMERLKGGSLE 1978
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30686489|ref|NP_565811.2| microtubule organization 1 protein [Arabidopsis thaliana] gi|75250086|sp|Q94FN2.1|MOR1_ARATH RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein GEMINI POLLEN 1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1; AltName: Full=Protein RID5; AltName: Full=Protein ROOT INITIATION DEFECTIVE 5 gi|14317953|gb|AAK59871.1|AF367246_1 microtubule organization 1 protein [Arabidopsis thaliana] gi|22252950|gb|AAM94170.1| MOR1/GEM1 [Arabidopsis thaliana] gi|330254039|gb|AEC09133.1| microtubule organization 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3057 bits (7926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1535/2018 (76%), Positives = 1732/2018 (85%), Gaps = 52/2018 (2%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +A AS K G KKDGS + E SK E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK +K+ KS SNG K GNR SR +PTKG+ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1615
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1616 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1675
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1676 DLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1735
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT TIG
Sbjct: 1736 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIG 1795
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1796 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1855
Query: 1855 LGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENP 1914
L + SP+ LS + + MN +S+ YT+D R AS + P
Sbjct: 1856 LALPSPDIPSLSSLDVKPL-----MNPRSD--------LYTDDIR-----ASNMNP---- 1893
Query: 1915 LSDQRNERFGVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQSRSS 1974
GV +GTLDAIRERMK+MQLA++ +P ++PL+ NDN++ ++ QS
Sbjct: 1894 ---------GVMTGTLDAIRERMKNMQLASS----EPVSKPLMPTNDNLS--MNQQSVPP 1938
Query: 1975 DRASVEN-PAQGSVLPMDEKALSGLQARMERLKSGTIE 2011
+ E VLPMDEKALSGLQARMERLK G++E
Sbjct: 1939 SQMGQETVHTHPVVLPMDEKALSGLQARMERLKGGSLE 1976
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413952123|gb|AFW84772.1| hypothetical protein ZEAMMB73_280693 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 2883 bits (7475), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1445/2029 (71%), Positives = 1700/2029 (83%), Gaps = 56/2029 (2%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE GPLF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDAL+A+ +AADADA RYAKEVCD+I AKCLTGRPKTVEKAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALLAFQRAADADASRYAKEVCDSIVAKCLTGRPKTVEKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEA +VFL+ MEKA+KNKVAKAVVPAIDVMFQALSEFG K++PPK+ILKMLPELFDH D
Sbjct: 123 ELEASEVFLEAMEKAVKNKVAKAVVPAIDVMFQALSEFGTKVVPPKKILKMLPELFDHPD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVSGLAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
+KEL +E + E G SEE+ D P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 EKELEEESVPETSGANTSEEAATDAPVEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
R+DAVAELTKL S K+IAPGDF E+CRTLKKLITDVN+AV+VEA QAIGNLARGLR FS
Sbjct: 303 RRDAVAELTKLGSAKKIAPGDFHEICRTLKKLITDVNLAVSVEATQAIGNLARGLRAQFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
G++R LLPVLLEKLKEKKPT+ E+L+QTLQAMHK+GC L+DV+EDV+ +VKNKVPLVRS
Sbjct: 363 GNARMLLPVLLEKLKEKKPTMTEALSQTLQAMHKSGCFTLIDVIEDVRAAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
LTL WV FCIETS+KA VLK+HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PL
Sbjct: 423 LTLTWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLS+MI GS D + +A + TSG + + ++S +++SAASM
Sbjct: 483 ERSLEKLDDVRKKKLSDMI-GSSSDSVLSSGTAPITTSGAATSARGVADSMSMKRSAASM 541
Query: 542 LSGKRPVSAAPASKKGGPVKPS-AKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGK+PV AA A+KK GP K + AKK G Q + EDVEP+EMS EEIE RL S
Sbjct: 542 LSGKKPVQAAAATKKSGPSKSTAAKKTDGGSQSKASAALEIEDVEPAEMSFEEIEERLKS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
++ A+T+ QLKS+VWKERLEAI L+Q+VE + LD+S E+L+RL+C +PGWSEKNVQVQ
Sbjct: 602 VVKAETISQLKSSVWKERLEAIGVLKQEVENLTELDKSAELLIRLLCAVPGWSEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIEV Y+A+T KFPK+CVVLCLLG+SERVADIKTR AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEVNTYIASTVNKFPKRCVVLCLLGVSERVADIKTRTSAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RLYKIMK+HKNPKVLSEGILWMVSAVEDFG+S+LKLKD+IDFCKDTGLQSSAA TRNATI
Sbjct: 722 RLYKIMKEHKNPKVLSEGILWMVSAVEDFGISNLKLKDMIDFCKDTGLQSSAAVTRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG--TVVPKKTVRASESTSSVS 838
KL+G LHKFVGPDIKGFL+DVKPALLSALD EYEKNPFEG PK+TVR ++ SSVS
Sbjct: 782 KLIGMLHKFVGPDIKGFLSDVKPALLSALDTEYEKNPFEGAAAAAPKRTVRVLDTASSVS 841
Query: 839 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG 898
+G DGLPREDIS K TPTL+K+L SPDWKVRLESI+AV KI+EEANKRIQP GT +LF
Sbjct: 842 AGLFDGLPREDISAKITPTLLKNLGSPDWKVRLESIDAVTKIVEEANKRIQPTGTADLFS 901
Query: 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLT 958
LRGRLYDSNKNLVMATL T+G +A AMGP+VEKSSKG+L+D+LKCLGDNKKHMRECTLT
Sbjct: 902 ALRGRLYDSNKNLVMATLSTIGGLAYAMGPSVEKSSKGILADVLKCLGDNKKHMRECTLT 961
Query: 959 VLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPAS 1018
LD+W+AA LDKMVPY+ +L D K G+EGRKDLFDWLSK ++ +S +A LLKP++
Sbjct: 962 ALDSWIAAAQLDKMVPYIIVSLGDQKTGSEGRKDLFDWLSKHVSKMSDPSEALPLLKPSA 1021
Query: 1019 IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ---- 1074
++ DKSS+VRKAAE+ + EILR GQE + +NLKD+ P LA++ ER+KL+ +
Sbjct: 1022 SSLMDKSSEVRKAAESFMNEILRICGQEVVGRNLKDLPSPTLAIVSERLKLSTVHEGFSE 1081
Query: 1075 -VSMGPTSKSSSKVPKSASNGVSKHG--------NRAISSRVIPTKGARPESIMSVQDFA 1125
V M TS S +P A +KHG + +S R +P + + +++S QD A
Sbjct: 1082 SVKMVTTSMS---LPSKAGLKNNKHGLNDRGSNVGKLVSQRGLPARAS--VTMVSTQDPA 1136
Query: 1126 VQSQALLNVKDSNKEDRERMV-VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDF 1184
QSQAL N+KDSNKE+RER V VR+FKFE+PR EQI EL+ D+ K+FRED+ RL ++DF
Sbjct: 1137 -QSQALFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIDLFKHFREDVSLRLWNSDF 1195
Query: 1185 KKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRD 1244
K+Q+DG+E+LQKALPS K++IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D
Sbjct: 1196 KRQIDGIELLQKALPSSWKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDILKD 1255
Query: 1245 EGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKN 1304
+ Y LTE+EAA+FLPCL+EKSGHNIEKVREKM EL KQ++N YS K +PYILEGLRSKN
Sbjct: 1256 QSYMLTEAEAAIFLPCLIEKSGHNIEKVREKMGELIKQMINIYSLPKLIPYILEGLRSKN 1315
Query: 1305 NRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGE 1364
NRTRIECVD+VG+ IDHHG E+ G +K+L VA+LTAERDGEIRKAALNTLAT YK LG+
Sbjct: 1316 NRTRIECVDIVGYFIDHHGTEVGGLMKNLPSVAALTAERDGEIRKAALNTLATAYKNLGD 1375
Query: 1365 DIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD 1424
D+WRYVGKL+DAQ+SMLDDRFKWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+
Sbjct: 1376 DVWRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGE 1435
Query: 1425 -VSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGM 1483
VS+ V+G +++ R++G+++ H++R ++PR + S SGP DW EAL+I++ G PEQSVEGM
Sbjct: 1436 VVSRPVAG-SMISRDFGYADAHMDRHMVPRQIPSTSGPVDWREALEIVALGLPEQSVEGM 1494
Query: 1484 KVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTL 1543
KV+CHEL QA DPE +++++L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTL
Sbjct: 1495 KVICHELTQAA-DPESTLLEDLIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTL 1553
Query: 1544 MQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADR 1603
MQTFQ KRLA+AV+E TLD+LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNA+R
Sbjct: 1554 MQTFQIKRLAHAVKEGTLDNLITELLLWLLDERVPLMDDGSQLLKALNVLMLKILDNAER 1613
Query: 1604 TSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLD 1663
TSSFVVLINLLRPLDPSRWPSP ES A +NQ+FSDLVVKCLIKLTKVLQSTIY+VDLD
Sbjct: 1614 TSSFVVLINLLRPLDPSRWPSPTPTESLAVKNQKFSDLVVKCLIKLTKVLQSTIYEVDLD 1673
Query: 1664 RILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKP 1723
RILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPID +P
Sbjct: 1674 RILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDAEP 1733
Query: 1724 QPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFK 1783
QPIILAYIDLNL+TLAAARMLT +GP GQTHWGD+A+NNP +T+SADAQLKQELAAIFK
Sbjct: 1734 QPIILAYIDLNLQTLAAARMLTPSGPMGQTHWGDAASNNPNPSTHSADAQLKQELAAIFK 1793
Query: 1784 KIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPS 1843
KIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ+EKNAAAGR PS
Sbjct: 1794 KIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQVEKNAAAGRMPS 1853
Query: 1844 SVPMATPPPAALGVSSPEFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGA 1903
S+P++T PP + +P+FAP SPVHT S+ Y EDN G
Sbjct: 1854 SLPLST-PPPIAAIPNPKFAP-SPVHTKSIGKT----------------DYNEDNASG-- 1893
Query: 1904 IASKVLPPENPLSDQRNERFGVTSGTLDAIRERMKSMQLAAAAGNPDPGN-RPLINMNDN 1962
++ + ++DQ+ +R+ ++GTLDA+RERMKS+Q AAA G+ D RPL +MN
Sbjct: 1894 -ETQPFRGQGAITDQQTDRYHTSAGTLDALRERMKSIQ-AAAIGHFDGAQARPLASMNG- 1950
Query: 1963 VNNGLSSQSRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIE 2011
S+ R E + ++ PMDE+ALSGLQARMERLKSG++E
Sbjct: 1951 -----SNMVHGGTRLDGEPQQRSNIPPMDERALSGLQARMERLKSGSME 1994
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2013 | ||||||
| TAIR|locus:2058739 | 1978 | MOR1 "MICROTUBULE ORGANIZATION | 0.922 | 0.938 | 0.741 | 0.0 | |
| UNIPROTKB|E1B7K5 | 2032 | CKAP5 "Uncharacterized protein | 0.516 | 0.511 | 0.294 | 2.3e-173 | |
| UNIPROTKB|E2RSW0 | 2033 | CKAP5 "Uncharacterized protein | 0.554 | 0.548 | 0.285 | 1.4e-172 | |
| UNIPROTKB|Q14008 | 2032 | CKAP5 "Cytoskeleton-associated | 0.553 | 0.548 | 0.285 | 8.7e-171 | |
| UNIPROTKB|F1P0Y0 | 2036 | CKAP5 "Uncharacterized protein | 0.516 | 0.510 | 0.294 | 5.7e-169 | |
| MGI|MGI:1923036 | 2032 | Ckap5 "cytoskeleton associated | 0.518 | 0.513 | 0.288 | 8.2e-169 | |
| ZFIN|ZDB-GENE-051120-174 | 2033 | ckap5 "cytoskeleton associated | 0.497 | 0.492 | 0.295 | 2.9e-160 | |
| UNIPROTKB|F1M949 | 1778 | Ckap5 "Protein Ckap5" [Rattus | 0.397 | 0.449 | 0.292 | 4.1e-143 | |
| DICTYBASE|DDB_G0268616 | 2013 | cepJ "centrosomal protein 224 | 0.267 | 0.267 | 0.271 | 1.1e-123 | |
| UNIPROTKB|F1SIB5 | 1517 | F1SIB5 "Uncharacterized protei | 0.252 | 0.335 | 0.313 | 2.3e-113 |
| TAIR|locus:2058739 MOR1 "MICROTUBULE ORGANIZATION 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 7057 (2489.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 1388/1871 (74%), Positives = 1555/1871 (83%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
PWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTVADSNAPVQ+KALD
Sbjct: 16 PWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTVADSNAPVQEKALD 75
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVME 134
ALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWVELEAVDVFLD ME
Sbjct: 76 ALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWVELEAVDVFLDTME 135
Query: 135 XXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
+DVMFQALSEFG+K+IPPKRILKMLPELFDHQDQNVRAS+KG+TLE
Sbjct: 136 KAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQDQNVRASAKGVTLE 195
Query: 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDV 254
LCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQDKE E S+ V
Sbjct: 196 LCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQDKEPEAEASSDVV 255
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS 314
G GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSERK+AVAELTKLAS
Sbjct: 256 GDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLAS 315
Query: 315 TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXX 374
TK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS SSRF
Sbjct: 316 TKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFSASSRFMLPVLLEK 375
Query: 375 XXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434
+V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS TL W+TFC+ETS
Sbjct: 376 LKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRSSTLTWLTFCLETS 435
Query: 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 494
+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPLERS+EKLDDVR+
Sbjct: 436 NKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPLERSLEKLDDVRKK 495
Query: 495 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554
KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASMLSGKRP +A AS
Sbjct: 496 KLSEMIAGSGGGDQAGTSSVTVQSSVGSTATGN-SDASFVRKSAASMLSGKRPAPSAQAS 554
Query: 555 KKGGPVKPSA-KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSA 613
KK G KP KKDGS + E SK E PEDVEP+EM LEEIE+RLGSL+ +TV QLKS+
Sbjct: 555 KKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGSLVKPETVSQLKSS 614
Query: 614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAAT 673
VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKN Y+++T
Sbjct: 615 VWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQQQVIEIITYISST 674
Query: 674 ATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPK 733
A KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FERL+KIMK+HKNPK
Sbjct: 675 AAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFERLFKIMKEHKNPK 734
Query: 734 VLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793
VLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATIKLLGALHKFVGPD
Sbjct: 735 VLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATIKLLGALHKFVGPD 794
Query: 794 IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGK 853
IKGFL DVKPALLSALD EYEKNPFEGT PK+ V+ LPREDIS K
Sbjct: 795 IKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVVKTSVSTSTSSGGLDS-LPREDISTK 853
Query: 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913
TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGLRGRL DSNKNLVM
Sbjct: 854 ITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGLRGRLLDSNKNLVM 913
Query: 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 973
TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL LD WL AVHLDKM+
Sbjct: 914 QTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAALDLWLGAVHLDKMI 973
Query: 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAE 1033
PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS AMTDKS+DVRKAAE
Sbjct: 974 PYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTAMTDKSADVRKAAE 1033
Query: 1034 ACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQVSMGPTXXXXXXX 1087
CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+ GP
Sbjct: 1034 GCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSKAMAGPVSKGVTKI 1093
Query: 1088 XXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVV 1147
NG K GNR SR +PTKG+ I SV D A+QSQALLN KDSNKEDRER+VV
Sbjct: 1094 SKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNTKDSNKEDRERVVV 1148
Query: 1148 RRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1207
RR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+LQKALPS+ K+IIE
Sbjct: 1149 RRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIE 1208
Query: 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267
VLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EAA+FLPCL EK GH
Sbjct: 1209 VLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEAAIFLPCLAEKLGH 1268
Query: 1268 NIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS 1327
NIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL+G+L++ G EI
Sbjct: 1269 NIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDLIGYLLETCGTEIG 1328
Query: 1328 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKW 1387
G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLTDAQKSM+DDRFKW
Sbjct: 1329 GLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLTDAQKSMIDDRFKW 1388
Query: 1388 KVRXXXXXXXXXXXXARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVE 1447
K + ARAALRRSVR++G ++AEQSGD+SQ+V GP R++YG SE +E
Sbjct: 1389 KAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLFPRQSYGISEQMLE 1448
Query: 1448 RSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVK 1507
R+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+NDPE S +DELVK
Sbjct: 1449 RTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQASNDPEESAIDELVK 1508
Query: 1508 DADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQXXXXXXXXXX 1567
DAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+AV+
Sbjct: 1509 DADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAHAVKEGTLESLITE 1568
Query: 1568 XXXXXXXERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPAS 1627
ERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LLRPLDPSRWPSPA+
Sbjct: 1569 LLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLLRPLDPSRWPSPAT 1628
Query: 1628 NESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGA 1687
E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ+LGMEEIRRRAGA
Sbjct: 1629 AEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQDLGMEEIRRRAGA 1688
Query: 1688 DDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTST 1747
DDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLNLETLAAARMLT+T
Sbjct: 1689 DDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLNLETLAAARMLTAT 1748
Query: 1748 GPGGQTHWGXXXXXXXXXXXXXXXXQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPK 1807
GP GQTHW QLKQEL AIFKKIGDKQT TIGLY+LY IT+ YPK
Sbjct: 1749 GPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIGLYDLYHITKSYPK 1808
Query: 1808 VDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSPEFAPLSP 1867
VDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++L + SP+ LS
Sbjct: 1809 VDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSSLALPSPDIPSLSS 1868
Query: 1868 VHTNSMNDAKS 1878
+ + + +S
Sbjct: 1869 LDVKPLMNPRS 1879
|
|
| UNIPROTKB|E1B7K5 CKAP5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 2.3e-173, Sum P(3) = 2.3e-173
Identities = 319/1085 (29%), Positives = 522/1085 (48%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGMEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +G RP R +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINPVQLKELEEEWVKLPTGAPRPARFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEK 487
+ + + K + K + ++ +ND PEVRDAAF L K VG + P ++K
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 488 L--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544
L D ++ ++ E++ G +A + G + S A + K A++ G
Sbjct: 485 LKLDKIKECSEKVELVHGKKAGLAADKKDFK-PVPGRAAASGAAGDKD--TKDASAPKPG 541
Query: 545 KRPVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGS 600
P+ APA+K GGP K A + G+G T K E E VEP E+S+E E + +
Sbjct: 542 --PLKKAPAAKPGGPPKKGKPAAQGGTGGTGTKSKKAVETKEMVEP-ELSIEVCEEKASA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++PA + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 599 VLPATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ +++ D+K +A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACVLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXX-- 838
LLG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 777 TLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGE 836
Query: 839 ---------XXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ 889
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQ
Sbjct: 837 DGDEPDDGGSDAVDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAAIINEA-KFIQ 895
Query: 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949
P GEL L+GRL DSNK LV TL L +A AMGP +++ K + ++ LGD+K
Sbjct: 896 P-NIGELPTALKGRLNDSNKILVQQTLTILQQLAVAMGPNIKQHVKNLGIPVITVLGDSK 954
Query: 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 1009
++R L ++AW + + + + K R++L WL+++L L P
Sbjct: 955 NNVRSAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPT 1014
Query: 1010 AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILE 1065
L P + + D++ DVRK A+ + + G E + K LK + +LE
Sbjct: 1015 DLILCVPQLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLE 1074
Query: 1066 RIKLN 1070
+ K N
Sbjct: 1075 KAKAN 1079
|
|
| UNIPROTKB|E2RSW0 CKAP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.4e-172, Sum P(3) = 1.4e-172
Identities = 331/1160 (28%), Positives = 549/1160 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKLVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ + + K + K + ++ +ND PEVRDAAF L K VG + + + +D
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 491 VRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR- 546
++ +K+ SE + G A G ++ + ++ VP A+ + K + + K
Sbjct: 485 LKLDKIKECSEKVELVHGKKA-GLAADKKESK--PVPGRTATSGAAGDKDTKDISAPKPG 541
Query: 547 PVSAAPASKKGGPVK---PSAK-KDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602
P+ AP +K GGP K P+A GS + K E E VEP E+S+E E + +++
Sbjct: 542 PLKKAPTTKAGGPPKKGKPAAPGSTGSAGTKNKKGPETKEIVEP-ELSIEVCEEKASAVL 600
Query: 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXX 662
PA + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 601 PATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQM 660
Query: 663 XXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERL 722
+A F K + L G+ +++ D+K +A + +T +EA + E++
Sbjct: 661 KLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQV 719
Query: 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782
+ KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I L
Sbjct: 720 MSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITL 778
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXX---- 838
LG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 779 LGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGISKHSISGTDEGEDG 838
Query: 839 -------XXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP
Sbjct: 839 DEPDEVGTDVVDLLPRTEISDKITSELVSKISDKNWKIRKEGLDEVAGIINEA-KFIQP- 896
Query: 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951
GEL L+GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K +
Sbjct: 897 NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNN 956
Query: 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011
+R L ++AW + + + + K R++L WL+++L L P
Sbjct: 957 VRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDL 1016
Query: 1012 HLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERI 1067
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1017 ILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKA 1076
Query: 1068 KLNGASQ--VSMGPTXXXXXXXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
K N ++ S + S ++SS V P + + V A
Sbjct: 1077 KANMPAKPAASAKASSKPMGGSAPAKFQPSSAPVEDSVSSTVEPKPDPKKAKALGVSSKA 1136
Query: 1126 VQSQAL-LNVKDSNKEDRER 1144
+Q + K S KED ++
Sbjct: 1137 KSAQGKKVPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|Q14008 CKAP5 "Cytoskeleton-associated protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 8.7e-171, Sum P(3) = 8.7e-171
Identities = 332/1161 (28%), Positives = 546/1161 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +A RPTR +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALESVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 IKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ + + K + K + ++ +ND PEVRDAAF L K VG + + + +D
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 491 VRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR- 546
++ +K+ SE + G A G ++ + + +P A+ + K + + K
Sbjct: 485 LKLDKIKECSEKVELIHGKKA-GLAADKKEFK--PLPGRTAASGAAGDKDTKDISAPKPG 541
Query: 547 PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLI 602
P+ APA+K GGP K A G+G T K E E VEP E+S+E E + +++
Sbjct: 542 PLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVL 600
Query: 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXX 662
P + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 601 PPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQM 660
Query: 663 XXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERL 722
+A F K + L G+ +++ D+K +A + +T +EA + E++
Sbjct: 661 KLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQV 719
Query: 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782
+ KNPK SE + W+ +A+++FG S L +K I K T L ++ A R A I L
Sbjct: 720 VSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTAAITL 778
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX----- 837
LG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 779 LGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGISKHSTSGTDEGEDG 838
Query: 838 ------XXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891
LPR +IS K T LV + +WK+R E ++ V I+ +A K IQP
Sbjct: 839 DEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINDA-KFIQP- 896
Query: 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951
GEL L+GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K +
Sbjct: 897 NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNN 956
Query: 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011
+R L ++AW + + + + K R++L WL+++L L P
Sbjct: 957 VRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDL 1016
Query: 1012 HLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERI 1067
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1017 ILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKA 1076
Query: 1068 KLNGASQVSMGPTXXXXX---XXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDF 1124
K+N ++ + PT S ISS P + +
Sbjct: 1077 KVNMPAKPAP-PTKATSKPMGGSAPAKFQPASAPAEDCISSSTEPKPDPKKAKAPGLSSK 1135
Query: 1125 AVQSQAL-LNVKDSNKEDRER 1144
A +Q + K S KED ++
Sbjct: 1136 AKSAQGKKMPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|F1P0Y0 CKAP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 5.7e-169, Sum P(3) = 5.7e-169
Identities = 319/1084 (29%), Positives = 514/1084 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + L I D K + L KK V DSNA Q K L+
Sbjct: 11 PIDQKCEHKLWKARLNGYEEALKLFQKIDDEKSPEWSKYLGLIKKFVTDSNAVAQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAV--FMLWVELEAVDVFLDV 132
A +AY++ A AG+ EV + K +PK K V ++++E+E + +
Sbjct: 71 AALAYVENAHV-AGKTTGEVASGVVNKVFN-QPKARAKELGVDICLMYIEIEKGEAVQEE 128
Query: 133 MEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K L
Sbjct: 129 LLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESREKAVRDEAKLLA 188
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELIS 251
+E+ RWI +D ++ L + + KELE E V VS A + TR +R++Q EL +
Sbjct: 189 VEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKVSSAAPKQTRFLRSQQ--ELKAKFEQ 244
Query: 252 EDVGPGPSEESTAD---VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
+ G +E D P++D YEL++ V+IL+ L K F+E ++A KW ERK+A+
Sbjct: 245 QQAAGGDGDEGDDDEEEAVPQVDAYELLEAVEILSKLPKD-FYEKIEAKKWQERKEALEA 303
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFX 367
+ L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 304 VEVLVKNPKLESGDYADLVKVLKKVVGKDTNVMLVALAAKCLAGLASGLRKKFGQYAGHV 363
Query: 368 XXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 364 VPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFI 421
Query: 428 TFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLER 483
+ + + K + K + ++ +ND PEVRDA F L K G + P
Sbjct: 422 ARSFRHCTPSTLPKSLLKPFCAALLKHINDSAPEVRDAGFEALGTALKVAGEKAVNPFLA 481
Query: 484 SIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLS 543
++KL R + +E + G + G P++ S K AA+
Sbjct: 482 DVDKLKLDRIKECAEKVELVYGKKTGAAEKKEGKPVAGKAPALSGSAGDKEIKDAAAK-P 540
Query: 544 GKRPVSAAPASKKGGPVKPSAKKDGSGKQET-SKLTEAPEDVE--PSEMSLEEIESRLGS 600
G P AP K GGP K S +G +K + PE E SE+S+E E + +
Sbjct: 541 G--PQKKAPVVKPGGPPKKSKPAAAAGTGGAGAKGKKGPETKEIFESELSIEVCEEKAAA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++PA + QL S WKERL ++ ++ VE ++ + + LVR++ PGW E N
Sbjct: 599 VLPASCIQQLDSGNWKERLASMEEFQKAVELMERSEMPCQALVRMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ ++V D+K ++A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKVGDVKCGSNAKEAMTAIAEACQLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVVAMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXX 840
LLG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 777 TLLGVMYLYVGPPLRMFFEDEKPALLSQIDAEFEKMQGQTAPAPTRGISRHSGGSGDDGE 836
Query: 841 XXXX----------LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP 890
LPR DI K T LV + +WK+R E ++ V I+ +A K IQP
Sbjct: 837 EEEQEDVGNDVVDLLPRTDIGDKITAELVAKIGDKNWKIRKEGLDEVTSIINDA-KFIQP 895
Query: 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950
GEL L+ RL DSNK LV TL L +A+AMGP +++ K + ++ LGD+K
Sbjct: 896 -NIGELPAALKSRLNDSNKILVQQTLSILQQLATAMGPNIKQHVKNLGIPVITVLGDSKN 954
Query: 951 HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
++R L ++AW + + + + K R++L WL+ +L L P
Sbjct: 955 NVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLADKLPTLRSVPSD 1014
Query: 1011 AHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILER 1066
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1015 LLLCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGFEKMAKATGKLKPTSKDQVLAMLEK 1074
Query: 1067 IKLN 1070
K N
Sbjct: 1075 AKAN 1078
|
|
| MGI|MGI:1923036 Ckap5 "cytoskeleton associated protein 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1095 (390.5 bits), Expect = 8.2e-169, Sum P(3) = 8.2e-169
Identities = 314/1089 (28%), Positives = 516/1089 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + +++VE+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +D+ VR +K +
Sbjct: 130 LKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLFAI 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RW +D VK L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 190 EIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P++D YEL+D V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEK 487
+ + + K + K + ++ +ND PEVRDAAF L K VG + P ++K
Sbjct: 425 RHCTSSTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKSVNPFLADVDK 484
Query: 488 L--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544
L D ++ ++ E++ G +AT ++ G + S A + K + G
Sbjct: 485 LKLDRIKECSEKVELVHGKKSGLATEKKESK-PLPGRAAASGAAGDKD--TKDVSGPKPG 541
Query: 545 KRPVSAAPASKKGGPVKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGS 600
P+ P +K GGP K + GS T K E E VEP E+S+E E + +
Sbjct: 542 --PLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGLETKEIVEP-ELSIEVCEEKASA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++P + L S+ WKERL + ++ VE ++ + + LV+++ PGW E N
Sbjct: 599 VLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMPCQALVKMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ +++ D+K +A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXX 840
LLG ++ +VGP ++ D KPALLS +DAE++K + P + +
Sbjct: 777 TLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGIAKHSTSATDEGE 836
Query: 841 XXXX-----------LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ 889
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQ
Sbjct: 837 DGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQ 895
Query: 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949
P GEL L+GRL DSNK LV TL L +A AMG + + K + ++ LGD+K
Sbjct: 896 P-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGANIRQHVKNLGIPVITVLGDSK 954
Query: 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 1009
++R L ++AW + + + + K R++L WL+++L L P
Sbjct: 955 NNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPT 1014
Query: 1010 AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILE 1065
L P + + D++ DVRK A+ + + G E + K LK + +LE
Sbjct: 1015 DLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLE 1074
Query: 1066 RIKLNGASQ 1074
+ K N S+
Sbjct: 1075 KAKANMPSK 1083
|
|
| ZFIN|ZDB-GENE-051120-174 ckap5 "cytoskeleton associated protein 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 2.9e-160, Sum P(3) = 2.9e-160
Identities = 314/1064 (29%), Positives = 515/1064 (48%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + L + + + LG L KK V +SNA Q K L+
Sbjct: 11 PIDQKCEHKVWKARLSGYEEALKLFQKLDEKSPEWSKYLG-LIKKFVTESNAVAQLKGLE 69
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEK--AQAVFMLWVELEAVDVFLDV 132
A +A+++ A AG+ EV + K +PK K + ++++E+E +V D
Sbjct: 70 AALAFIENAHV-AGKTVGEVVSGVVNKVFN-QPKARAKELGTEICLMYIEIEKAEVVQDE 127
Query: 133 MEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ I+ + +AL EFG+KII K ++K+LP+LF+ +++ VR +K L
Sbjct: 128 LIKGLDNKNPKIVVACIEALRKALCEFGSKIITLKPVVKVLPKLFESREKAVRDEAKLLA 187
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQD---KELGQE 248
+E+ RWI +D ++ L + + KELE E V V TA + R +R++QD K Q+
Sbjct: 188 VEIYRWI-RDALRAPL-QNINSVQLKELEEEWVKVPATAPKQIRFLRSQQDLKAKFEQQQ 245
Query: 249 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
D G EE V ++D YEL++ V+IL+ L K F+E ++A KW ERK+A+
Sbjct: 246 AAGGDEADGDDEEVAEAV--QVDAYELLEAVEILSKLPKD-FYEKIEAKKWQERKEALEA 302
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFX 367
+ L ++ GD+ ++ R LKK+I D N+ + A + + LA GLR F +
Sbjct: 303 VEALTKNPKLESGDYGDLVRALKKVIGKDANVMLVSMAAKCLAGLATGLRKKFGTYAGLV 362
Query: 368 XXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
V ++L + + A+ L ++ EDV + NK P ++ ++
Sbjct: 363 VPTILEKFKEKKPQVVQALQEAIDAVFLTTTLQ--NISEDVLAVMDNKNPSIKQQASLFL 420
Query: 428 TFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486
+ + + K V K + ++ +ND PEVRDAAF L K +G + + +
Sbjct: 421 ARSFRHCTPSTLPKSVLKPFCAAFLKQVNDSAPEVRDAAFEALGTAMKVIGEKAVNPFLT 480
Query: 487 KLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTSGGSVPSVEA-SESSFVRKSAA 539
+D ++ +K+ E +I GG G + + + + P VEA +++S K +A
Sbjct: 481 DVDKLKLDKIKECADKVELIGKKGG----GGGEKKERPAAKASPPVEAPAKTSGPPKKSA 536
Query: 540 SMLSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
P AA KKG P PSAK + K E E +E +E+S E E +
Sbjct: 537 -------PAKAAGPPKKGKPAAAPSAK--------SKKAPETKEIIE-TELSPEVCEEKA 580
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXX 658
+++PA + L SA WKERL ++ ++ VE + + + LV+++ PGW E N
Sbjct: 581 AAVLPASCMQLLDSANWKERLASMEEFQKAVEQMDKSEMPCQALVKMLAKKPGWKETNFQ 640
Query: 659 XXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
L A +F K ++ L G+ +++ D+K +A + LT EA +
Sbjct: 641 VMQMKLSIVG-LVAQKGQFSKTSALVVLDGLVDKIGDVKCGGNAKEALTAIGEACSLPWT 699
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
E++ I KNPK +E + W+ +A+++FG + + +K I+ K T L ++ A R +
Sbjct: 700 AEQVVSIAFAQKNPKNQAETLNWLANAMKEFGFAGINVKGFINNVK-TALGATNPAVRTS 758
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP----KKT------- 827
I LLG ++ ++G ++ F D KPALLS +DAE+ K + P KK
Sbjct: 759 AIALLGVMYLYMGAPLRMFFEDEKPALLSQIDAEFVKMQGQSPPAPTRGAKKAGAEEDGD 818
Query: 828 VRAXXXXXXXXXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V LPR DIS K T +V + +WK+R E ++ V ++ EA K
Sbjct: 819 VADEDEADGGAGDIMDMLPRTDISDKITSEMVSKISDKNWKIRKEGLDEVAAVISEA-KF 877
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
IQ A GEL L+GRL DSNK LV TL L +A AMGP++++ K + ++ LGD
Sbjct: 878 IQ-ANIGELPMALKGRLNDSNKLLVQQTLNILQQIAIAMGPSLKQHVKNLGIPVVTVLGD 936
Query: 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007
+K ++R + L+AW+ + + + + K R++L WLS++L L
Sbjct: 937 SKPNVRATAMATLNAWVEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLSEKLPTLRTV 996
Query: 1008 PDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
P L P + D+S DVRK A+ + + G + + K
Sbjct: 997 PADLMLCVPHLYTCLEDRSGDVRKKAQDALPTFMMHLGFDKMTK 1040
|
|
| UNIPROTKB|F1M949 Ckap5 "Protein Ckap5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 4.1e-143, Sum P(3) = 4.1e-143
Identities = 244/834 (29%), Positives = 395/834 (47%)
Query: 265 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT 324
D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L + R+ GD+
Sbjct: 6 DEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEGLVRSPRLEAGDYA 64
Query: 325 EVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVA 383
E+ + LKK++ D N+ + A + + LA GLR F + V
Sbjct: 65 ELVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVV 124
Query: 384 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-V 442
++L + + A+ L ++ EDV + NK P ++ T ++ + + + K +
Sbjct: 125 QALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSFRHCTSSTLPKSL 182
Query: 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502
K + ++ +ND PEVRDAAF L K VG + + + +D ++ +K+ E
Sbjct: 183 LKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKTVNPFLADVDKLKLDKIKE--CS 240
Query: 503 SGGDVATGTSSARVQTSGGSVPSV-EASESSFVRKSAASMLSGKRP--VSAAPASKKGGP 559
++ G S S P A+ S +SG +P + APA+K GGP
Sbjct: 241 EKVELVHGKKSGLAAEKKESKPLPGRAAASGAAGDKDTKDVSGPKPGPLKKAPATKAGGP 300
Query: 560 VKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW 615
K + GS T K E E EP E+S+E E + +++P + L S+ W
Sbjct: 301 PKKGKTTAPGGSASSGTKNKKGLETKEIAEP-ELSIEVCEEKASAVLPPTCIQLLDSSNW 359
Query: 616 KERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATAT 675
KERL + ++ VE ++ + + LV+++ PGW E N +A
Sbjct: 360 KERLACMEEFQKAVELMERSEMPCQALVKMLAKKPGWKETNFQVMQMKLHIVALIAQKGN 419
Query: 676 KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
F K + L G+ +++ D+K +A + LT +EA + E++ + KNPK
Sbjct: 420 -FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNPKNQ 478
Query: 736 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795
SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP ++
Sbjct: 479 SETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGPSLR 537
Query: 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX-----------XXXXXXX 844
D KPALLS +DAE++K + P + +
Sbjct: 538 MIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGISKHSTSGTDEGDDGDEPGDGSNDVVDL 597
Query: 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+GRL
Sbjct: 598 LPRVEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALKGRL 655
Query: 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964
DSNK LV TL L +A AMGP V++ K + IL LGD+K ++R L ++AW
Sbjct: 656 NDSNKILVQQTLNILQQLAVAMGPNVKQHVKNLGIPILTVLGDSKNNVRAAALATVNAWA 715
Query: 965 AAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTD 1023
+ + + + K R++L WL+++L L P L P + + D
Sbjct: 716 EQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPMLRSTPTDLILCVPHLYSCLED 775
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLNGASQ 1074
++ DVRK A+ + + G E + K LK + +LE+ K N S+
Sbjct: 776 RNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKANMPSK 829
|
|
| DICTYBASE|DDB_G0268616 cepJ "centrosomal protein 224 kDa" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 1.1e-123, Sum P(5) = 1.1e-123
Identities = 153/563 (27%), Positives = 266/563 (47%)
Query: 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
EDR+ HKNWK R +L + + E GP FKK +AD N Q++AL+ L
Sbjct: 12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPL 71
Query: 77 IAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEX 135
A++ D ++A + K RP+ EK +L +E ++ + ++ +
Sbjct: 72 SAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLK 130
Query: 136 XXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195
+ + QAL FG K IP K ILK F+++D+ +R + L +E+
Sbjct: 131 GTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEI 190
Query: 196 CRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISEDV 254
RWIGK + ++ E + K L+ + + + A P + R+E K L S+ +
Sbjct: 191 YRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPAVPLKYTRSEAAKALANA--SKGI 247
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-TKLA 313
P +V EID Y L+ V+IL L S F+EG++A KW ER + + +L T L
Sbjct: 248 QAKP------EVVEEIDPYSLMTAVNILPKLT-SEFYEGLQAKKWQERSEQMDKLVTILT 300
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXX 373
+T +I DF+E+C+ LKK++ DVN+ + +A+ +IG LA LR F+ +
Sbjct: 301 NTPKIETADFSELCKALKKILADVNVMIVQKAVVSIGLLADSLRGGFTSYVKPFITPILE 360
Query: 374 XXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433
+V +S+ T+ ++ ++L D+++++ ++++KVP ++ L ++ I
Sbjct: 361 KFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTATMQSKVPQIKQEVLVFICNSITN 419
Query: 434 SSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492
+ K A + KV K I ME LND +RD A AA+ +G R + + ++D ++
Sbjct: 420 TKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAFAALGGIIGERAMTPYLNQIDPIK 479
Query: 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552
K+ + + VAT + + + ++ SS +K AA+ + K + P
Sbjct: 480 AKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLPVSSSNKKPAAATGNSKSSSTTTP 535
Query: 553 ASKKGG----PVKPSAKKDGSGK 571
+ P PS+ D K
Sbjct: 536 TGRSSNSSPLPPPPSSSDDIKNK 558
|
|
| UNIPROTKB|F1SIB5 F1SIB5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 2.3e-113, Sum P(3) = 2.3e-113
Identities = 167/533 (31%), Positives = 258/533 (48%)
Query: 557 GGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 612
GGP K A + G+G T K E E VEP E+S+E E + +++PA + L S
Sbjct: 2 GGPPKKGKPAAQGGTGSTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVLPAPCIQLLDS 60
Query: 613 AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAA 672
+ WKERL + ++ VE + + + LVR++ PGW E N +A
Sbjct: 61 SNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQMKLHIVALIAQ 120
Query: 673 TATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP 732
F K + L G+ +++ D+K +A + LT +EA + E++ + KNP
Sbjct: 121 KGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNP 179
Query: 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792
K SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP
Sbjct: 180 KNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGP 238
Query: 793 DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXX-------- 844
++ F D KPALLS +DAE+EK + P + +
Sbjct: 239 SLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGEDGDEPDDGGNDV 298
Query: 845 ---LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+
Sbjct: 299 VDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALK 356
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K ++R L ++
Sbjct: 357 GRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNNVRAAALATVN 416
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA- 1020
AW + + + + K R++L WL+++L L P L P +
Sbjct: 417 AWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDLILCVPHLYSC 476
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLN 1070
+ D++ DVRK A+ + + G E + K LK + +LE+ K N
Sbjct: 477 LEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKAN 529
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94FN2 | MOR1_ARATH | No assigned EC number | 0.7606 | 0.9766 | 0.9939 | yes | no |
| Q5N749 | MOR1_ORYSJ | No assigned EC number | 0.7231 | 0.9821 | 0.9899 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2013 | |||
| pfam12348 | 228 | pfam12348, CLASP_N, CLASP N terminal | 0.001 | |
| pfam02985 | 31 | pfam02985, HEAT, HEAT repeat | 0.003 |
| >gnl|CDD|221541 pfam12348, CLASP_N, CLASP N terminal | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 30/187 (16%)
Query: 299 WSERKDAVAELTKL----ASTKRIAPGDFTEVCRTLK----KLITDVNIAVAVEAIQAIG 350
W R+ A+ +L + A P +F + L K ++ + ++ +
Sbjct: 21 WDAREKAIIKLRSIIKGNAPED--YPSEFLAGLKQLLEGILKALSSLRTTLSSTGCHLLK 78
Query: 351 NLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 410
LA L H + LLP LL+ + K ++++ Q + + V ++
Sbjct: 79 ELAIQLGHHLDPFAEILLPTLLKLCGDTKKIISQNANQAVADILSN-----VSYTPRLEL 133
Query: 411 SV-------KNKVPLVRSLTLNW-----VTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458
KN P R + W + S + Y + L D
Sbjct: 134 QHISAALQDKNVQP--REYSAIWLKILLIRHGHHKSHIEHHGGL-DLYEKSLKKGLEDAN 190
Query: 459 PEVRDAA 465
P VR+ A
Sbjct: 191 PGVRETA 197
|
This region is found at the N terminal of CLIP-associated proteins (CLASPs). CLASPs are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules. In yeast, Drosophila, and Xenopus, a single CLASP orthologue is present. In mammals, a second paralogue (CLASP2) exists which has some functional overlap with CLASP1. Length = 228 |
| >gnl|CDD|202500 pfam02985, HEAT, HEAT repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.003
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSV 476
+P+ +E LND PEVR+AA L A+A+ +
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALAEVL 31
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2013 | |||
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.96 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.89 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.86 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.85 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.73 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.69 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.64 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.63 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 99.57 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.57 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.47 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.44 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.41 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.36 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.35 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.24 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 99.23 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.21 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.2 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.08 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.01 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 98.99 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.72 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.7 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.66 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.63 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.62 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.62 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.6 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.53 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 98.38 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.35 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.33 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.87 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.78 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.71 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.61 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.54 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.46 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.32 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.27 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.15 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.15 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.08 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.03 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.02 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 96.96 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.87 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.87 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.77 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 96.72 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.71 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 96.63 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.44 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 96.39 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 96.36 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.35 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.32 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.28 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.27 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.24 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 96.19 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 96.14 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.11 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.04 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.01 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.0 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.97 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.89 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 95.85 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 95.84 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 95.76 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.71 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 95.64 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 95.6 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 95.5 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 95.45 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.42 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 95.25 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 95.25 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 95.12 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 95.02 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.86 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 94.78 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 94.76 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 94.47 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 94.44 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 94.43 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 94.26 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.19 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.11 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.06 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 94.02 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 93.83 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 93.79 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 93.75 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 93.51 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.37 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 93.18 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 93.08 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 92.96 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 92.95 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 92.89 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 92.81 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 92.6 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 92.46 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 91.91 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 91.9 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 91.9 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 91.88 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 91.78 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 91.66 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 91.32 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 91.29 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 91.24 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 91.11 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 90.78 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 90.77 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 90.47 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 90.39 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 90.34 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 90.2 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 89.75 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 89.53 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 89.19 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 89.15 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 88.86 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 88.64 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 87.8 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 87.16 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 87.03 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 86.66 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 86.53 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 86.49 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 86.03 | |
| KOG1087 | 470 | consensus Cytosolic sorting protein GGA2/TOM1 [Int | 85.88 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 84.83 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 84.81 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 84.55 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 84.43 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 84.34 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 83.9 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 83.89 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 83.65 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 83.17 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 82.47 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 82.41 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 82.17 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 82.15 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 82.01 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 81.98 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 81.96 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 81.91 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 81.8 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 81.37 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 81.08 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 81.03 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 80.7 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 80.43 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 80.33 | |
| PF11640 | 155 | TAN: Telomere-length maintenance and DNA damage re | 80.29 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 80.27 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 80.07 |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=531.12 Aligned_cols=745 Identities=25% Similarity=0.300 Sum_probs=568.9
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH-hcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHH
Q 000159 607 VGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLC 685 (2013)
Q Consensus 607 ~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L-~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~i 685 (2013)
...+.+..|+.|.++...+...+......+.....+++.. ...++|+..|++|..-.+.++..-.
T Consensus 11 ~~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~-------------- 76 (815)
T KOG1820|consen 11 DSELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKR-------------- 76 (815)
T ss_pred chhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhccccc--------------
Confidence 3347888999999999999988877554443334444433 3335677788777654444443211
Q ss_pred HHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHh
Q 000159 686 LLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKD 765 (2013)
Q Consensus 686 l~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~ 765 (2013)
..+.| ...+++..+....+...+++.++.. ...|.||..+.++..+..++.+||...+.++.+++.+..
T Consensus 77 -----~~~~~-----~~~~~~~~i~~~~~~~~~~e~~~~~-~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~ 145 (815)
T KOG1820|consen 77 -----VNIRD-----TKTQSLLRIGKLEDIKEVVEAAKAL-LSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGS 145 (815)
T ss_pred -----ccccC-----cchhHHHHHHHhhhhHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcc
Confidence 11222 2222333333333445555555555 368999999999999999999999987777888876665
Q ss_pred cCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhh-hccHHHHHHHHHHHhhCCCC----CCCC-----------------
Q 000159 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA-DVKPALLSALDAEYEKNPFE----GTVV----------------- 823 (2013)
Q Consensus 766 ~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~-~lkp~ll~~Le~ef~k~~~~----~~p~----------------- 823 (2013)
+ . +.+||.++.++++.+|++.|..+..++. .-.+.++..+...+.+.... ..+.
T Consensus 146 l-~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~ 221 (815)
T KOG1820|consen 146 L-A---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQL 221 (815)
T ss_pred c-c---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcc
Confidence 4 3 8899999999999999999998877653 22334444444443332210 0000
Q ss_pred --CcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHH
Q 000159 824 --PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (2013)
Q Consensus 824 --p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~ 901 (2013)
+.++.+...+......+..|.+||+||++++++.|...+.|++||.|+||++.+..++.+....+....++.+...++
T Consensus 222 ~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~k 301 (815)
T KOG1820|consen 222 EKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLK 301 (815)
T ss_pred cccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHH
Confidence 000000000000001234588999999999999999999999999999999999999997543455565678888889
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000159 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (2013)
Q Consensus 902 ~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~ 981 (2013)
.++.|+|.+|+..|+.+|+.||.+||..|.+|+...+|.|+.+++|+|+.+|+++..|+++|+..+++..+.+.|.+++.
T Consensus 302 i~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk 381 (815)
T KOG1820|consen 302 IRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALK 381 (815)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHhccCCCC----CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCCh
Q 000159 982 DAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1057 (2013)
Q Consensus 982 ~~k~~p~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~ 1057 (2013)
++ ||+.|.+++.|+.+++..++.. ..+..+++.+++..+|++.+||++|..++.++|+++|++.+.+++.++++
T Consensus 382 ~k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 382 GK--NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred CC--ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 87 6999999999999999988742 34566677799999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCccCCCCCCCCCCCcccccchhhhhhhhhc
Q 000159 1058 PALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVS-----KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL 1132 (2013)
Q Consensus 1058 ~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1132 (2013)
.....+.+.+.+.-.....+.+++++..+.....+..++ ......+++...|.+.+...+ ++..++ ....+.+
T Consensus 460 ~~~~~~~E~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~-~~~~~~-~~~~~~~ 537 (815)
T KOG1820|consen 460 QDIKPKEEKLKPLLHFLAAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANS-SRKIPE-AAEAPKL 537 (815)
T ss_pred chhhhhhhhccccccccccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCccccccc-ccCCcc-hhhcccc
Confidence 644444444433211111222222221110000000000 000000111111111111100 001111 1111211
Q ss_pred ccCCCChHHHh----hhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHH
Q 000159 1133 NVKDSNKEDRE----RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV 1208 (2013)
Q Consensus 1133 ~~~~~~k~~R~----~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~ 1208 (2013)
.+..+++|. +..+.+|++..+..+..+. |...++......||+.||+.|.++++.++.....+..++.++
T Consensus 538 --~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ 611 (815)
T KOG1820|consen 538 --QLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEP----SKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSI 611 (815)
T ss_pred --ccccccchhhhhhhhccCccccccchhhhhcc----cccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchH
Confidence 344566665 4667889998877665544 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccC
Q 000159 1209 LDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS 1288 (2013)
Q Consensus 1209 lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~v~p 1288 (2013)
.|++++|+++||+|+|+.+..+.++++...|..+...++.++..|...|.|++..+.|..++.+++.++.+.+....++.
T Consensus 612 ~~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s 691 (815)
T KOG1820|consen 612 QDLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLS 691 (815)
T ss_pred HhhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHHhhcCCChHHHHHHHHHHHHHHHHhChHHHH
Q 000159 1289 ATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWR 1368 (2013)
Q Consensus 1289 ~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~ 1368 (2013)
+.+..|++.+++..||.++|.+|++.+..++..-|.....-.+.+..++....++|..+|+++.+++...|.+.|+.+|+
T Consensus 692 ~~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (815)
T KOG1820|consen 692 VLMMVPSLREALELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWK 771 (815)
T ss_pred ccccchhhHhhccccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHH
Confidence 99999999999999999999999999999999999876445567799999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHhHHHHHHhhhh
Q 000159 1369 YVGKLTDAQKSMLDDRFKWKVR 1390 (2013)
Q Consensus 1369 ~vg~Ls~~~~s~l~er~kr~~~ 1390 (2013)
+.+.+.+.++++++.+|++..+
T Consensus 772 ~~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 772 ISILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred HHHHhhHHHhhhHHHhcCcccc
Confidence 9999999999999999998654
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=439.35 Aligned_cols=753 Identities=19% Similarity=0.230 Sum_probs=499.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh-hHHHHHHHH
Q 000159 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR-YAKEVCDAI 98 (2013)
Q Consensus 20 l~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~-~~~~v~~~L 98 (2013)
+.++.|+.|.++|.. ++.|+|...|+.+ .++..|....+..... -....+-..
T Consensus 14 l~~~~w~~~~~~~~q-------------------------l~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~~ 67 (815)
T KOG1820|consen 14 LCSQSWKNRLEAWKQ-------------------------LLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLSF 67 (815)
T ss_pred hhhhhhhhhHHHHHH-------------------------HhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeeccc
Confidence 777888888777653 5567788999999 8888888776542221 122234445
Q ss_pred HHhhcC-CChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhh
Q 000159 99 AAKCLT-GRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177 (2013)
Q Consensus 99 veK~l~-~k~~~k~~A~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll 177 (2013)
.++||. -++.+++...++++.+...+..+.+++.+...+.-|.||.+++++..+..++.+||...++++.+++.+..++
T Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~ 147 (815)
T KOG1820|consen 68 GLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA 147 (815)
T ss_pred hhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc
Confidence 678887 4788899999988888777888999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC-CCCCccchhhhhHhhhhhccccCCCC
Q 000159 178 DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVGP 256 (2013)
Q Consensus 178 ~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~-~~P~R~~rs~~~~~~~~ea~~~~~g~ 256 (2013)
|++||.++..++++||||+|.. ++.+++..-.+.++.++...+.+.... ....|..-+.+..........+..+.
T Consensus 148 ---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~ 223 (815)
T KOG1820|consen 148 ---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEK 223 (815)
T ss_pred ---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccc
Confidence 9999999999999999999985 556655444444444444443332211 11111111111000000000000000
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCC--CCCCChHHHHHHHHH
Q 000159 257 GPS--EESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLKK 332 (2013)
Q Consensus 257 ~~~--~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pk--i~~~~~~~l~~~L~k 332 (2013)
... ..........+|.||+.+++||+++++ .+|...+.+++|++|+|||+.+..++..++ +..+.++.+...++.
T Consensus 224 ~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki 302 (815)
T KOG1820|consen 224 PERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKI 302 (815)
T ss_pred cccccccccCCCCCCccccccCchhhhhhhcC-hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHH
Confidence 000 001111122278999999999999999 699999999999999999999999887666 444555666667777
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh
Q 000159 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (2013)
Q Consensus 333 ~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l 412 (2013)
+..|+|++|+..|++||+.||.+||..|.+|+..++|.+|+++||+|..+++++..|+++++.. +++.++++.|..++
T Consensus 303 ~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~l 380 (815)
T KOG1820|consen 303 RLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEAL 380 (815)
T ss_pred hccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHh
Confidence 7779999999999999999999999999999999999999999999999999999999999984 89999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHH
Q 000159 413 KNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDV 491 (2013)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~ 491 (2013)
++|||++|.+|..|+.+++...++.. ....++.++|.+++..+|++++||.||.++++++++++|++.++.++..+++.
T Consensus 381 k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 381 KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ 460 (815)
T ss_pred cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 99999999999999999999887432 23557999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccccccccccCCCCC-CCCCCCCCCCCCCCCCCCC--C
Q 000159 492 RRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRP-VSAAPASKKGGPVKPSAKK--D 567 (2013)
Q Consensus 492 ~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~s~~~~~~P-~~~~~~~~k~~~~k~~~~~--~ 567 (2013)
-+..+.|.+...-.......+...++. +....+. .++..........++ ++.+|....... ++...+ .
T Consensus 461 ~~~~~~E~~~p~~~~~~~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~-~~~~~~~~~ 532 (815)
T KOG1820|consen 461 DIKPKEEKLKPLLHFLAAPKEKSSAPD-------PQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSAN-SSRKIPEAA 532 (815)
T ss_pred hhhhhhhhccccccccccCCCcCCCCC-------ccccccceecccccccCCCCCCCccccCCCcccccc-cccCCcchh
Confidence 444455544321000000000000110 0000000 000000000000000 000000000000 000000 0
Q ss_pred CCCCCcCC-cCCCCCC-----CCCCC-CCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhc-cCcchHH
Q 000159 568 GSGKQETS-KLTEAPE-----DVEPS-EMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSV 639 (2013)
Q Consensus 568 ~~~~~~~s-~~~~~~~-----~~~~~-~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~-~~~~~~~ 639 (2013)
..+....+ +...... .+... ....++..+.....++......+.+.+.+.-.++++.+...-.+. .......
T Consensus 533 ~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~ 612 (815)
T KOG1820|consen 533 EAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQ 612 (815)
T ss_pred hccccccccccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHH
Confidence 00000000 0000000 00000 112244443344556677788999999999999999887554432 2222233
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC----CchhhHHHHHHHHHhhhcChh--hhHHHHHHHHHHHhhh
Q 000159 640 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK----FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAV 713 (2013)
Q Consensus 640 ~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~----~~~~~~~~il~~LveKlgD~K--~r~~a~e~L~~l~e~~ 713 (2013)
..++.|+.. ++.|+|..+....++++......... ..........+-+..+.|..+ .+..-..+.....+..
T Consensus 613 ~~~l~~~~l--r~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~ 690 (815)
T KOG1820|consen 613 DLLLEWLVL--RFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVL 690 (815)
T ss_pred hhhhHHHHH--HhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhc
Confidence 456677653 58899999998888887765543211 000000111122222333321 2333333444445555
Q ss_pred ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChh
Q 000159 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (2013)
Q Consensus 714 ~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~ 793 (2013)
+.......+.+.+ ..++-.+|.+++..+..++..-|...+....+....... ..+.+..+|.++..++...|.+.|+.
T Consensus 691 s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (815)
T KOG1820|consen 691 SVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALL-VKASDGKSSSKVKKTSWKPFDFLPDP 768 (815)
T ss_pred cccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhccccc-ccccchhhhhhhhcccccccccccch
Confidence 5555666666665 678888999999888887776666533222233333333 67778999999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHhhCC
Q 000159 794 IKGFLADVKPALLSALDAEYEKNP 817 (2013)
Q Consensus 794 l~~~L~~lkp~ll~~Le~ef~k~~ 817 (2013)
...+.....+.+...++..|.+-.
T Consensus 769 ~~~~~~~~~~~~~s~~~~~~~~~~ 792 (815)
T KOG1820|consen 769 SWKISILQADTDKSRIEKMFPKER 792 (815)
T ss_pred HHHHHHHhhHHHhhhHHHhcCccc
Confidence 988888888999999999987653
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-22 Score=251.90 Aligned_cols=842 Identities=15% Similarity=0.175 Sum_probs=539.4
Q ss_pred ChhhhccCCChHHHHHHHHHHHHHhhccCC-CCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHH
Q 000159 15 PWEDRLLHKNWKVRNEANIDLAALCDSITD-PKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (2013)
Q Consensus 15 pl~erl~~k~WK~R~~ayeeL~~~~~~~~d-~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~ 93 (2013)
-|-|++.+++-..|.+|..+|.+.++...- =++.-+.+...++-|.+.|+|..||..|+.|+..++.+.+.. ....
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHHH
Confidence 578999999999999999999999986311 012234556778889999999999999999999999877653 4667
Q ss_pred HHHHHHHhhcCCChhHHHHH-HHHHHHHHhhh------hhhhHHHHHHHHhhcCChh------hHHHHHHHHHHHHHHhC
Q 000159 94 VCDAIAAKCLTGRPKTVEKA-QAVFMLWVELE------AVDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSEFG 160 (2013)
Q Consensus 94 v~~~LveK~l~~k~~~k~~A-~~~ll~~~E~~------~~~~v~~~L~~~~~~KnpK------v~~~~l~~L~~~l~~fG 160 (2013)
++..|+.+.++++.+.|+.+ +.+.+...++. -...|+..+++.+..-+.+ +..+++.++...+.+||
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 88888888888899999886 88888888874 1346788888877766665 89999999999999999
Q ss_pred CCCcChh-HHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhH---HHhhhC-hHHHHHHHHHHHHh---c---CC
Q 000159 161 AKIIPPK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT---ILFEKM-RDTMKKELEVELVN---V---SG 229 (2013)
Q Consensus 161 ~~~i~~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~---~l~~~L-k~~q~keLe~~f~k---~---~~ 229 (2013)
.-..+.. .+++.+..-+......||+.|+.+++.+..+++.++... .+.++| ++.|..++...+.- + .|
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 9776764 588999999999999999999999999998888654322 222344 34444444433222 1 11
Q ss_pred C--------CCCC--ccchhhh--hHhhhh------hc-----cccCC----------------CCCCCCCCCCCCCCCC
Q 000159 230 T--------ARPT--RKIRAEQ--DKELGQ------EL-----ISEDV----------------GPGPSEESTADVPPEI 270 (2013)
Q Consensus 230 ~--------~~P~--R~~rs~~--~~~~~~------ea-----~~~~~----------------g~~~~~~~~~~~~~~i 270 (2013)
. ..|. .|..+.. .++..+ |+ |.+.. .++...+ .+++ -
T Consensus 246 ~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd-~~eD---e 321 (1233)
T KOG1824|consen 246 HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD-TEED---E 321 (1233)
T ss_pred chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC-Cccc---h
Confidence 1 1110 0110000 011000 00 11100 0010000 0000 0
Q ss_pred CCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHH
Q 000159 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349 (2013)
Q Consensus 271 D~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l 349 (2013)
|....-|..| -..++-|+..++-.|+.|++|++.+.+++ +...+.+.-|..+.+.|..+++|-.-+|....+.+.
T Consensus 322 d~~~~ed~eD----de~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~y 397 (1233)
T KOG1824|consen 322 DAMFLEDEED----DEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAY 397 (1233)
T ss_pred hhhhhhcccc----chhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHH
Confidence 0000001011 00125677788999999999999999976 566677777889999999999966666777777776
Q ss_pred HHHHHHhhh----------------c-----chhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--c--CCChHhH
Q 000159 350 GNLARGLRT----------------H-----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--G--CLNLVDV 404 (2013)
Q Consensus 350 ~~La~~L~~----------------~-----f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~--~--~~~l~~i 404 (2013)
-.+.+..+. . ....+..++..+-+.+++++...+..+..-|..++.. + ..++..+
T Consensus 398 i~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~sl 477 (1233)
T KOG1824|consen 398 IALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSL 477 (1233)
T ss_pred HHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhccccc
Confidence 666543331 1 2234566777788888888888888888888888765 1 2345667
Q ss_pred HHHHHHHhhcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHH
Q 000159 405 VEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482 (2013)
Q Consensus 405 l~~l~~~l~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~ 482 (2013)
+|.|.-.+.+|+ .+.|..++.|+..++..+++..|.++++.+.|.+..++.|+.+.|-..|.-....+.+++...
T Consensus 478 vpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl--- 554 (1233)
T KOG1824|consen 478 VPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPL--- 554 (1233)
T ss_pred chhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhccc---
Confidence 888888888777 689999999999999999999999999999999999999999998555554444444333210
Q ss_pred HHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000159 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 562 (2013)
Q Consensus 483 ~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~ 562 (2013)
+ |+.
T Consensus 555 ------~---------------------------------------------------------~~~------------- 558 (1233)
T KOG1824|consen 555 ------Q---------------------------------------------------------PPS------------- 558 (1233)
T ss_pred ------C---------------------------------------------------------CCc-------------
Confidence 0 000
Q ss_pred CCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 000159 563 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEIL 642 (2013)
Q Consensus 563 ~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~l 642 (2013)
+ .+. ++ ++.. -....
T Consensus 559 -----~---------~d~---------~~-~v~~-----------------------------------------m~~~t 573 (1233)
T KOG1824|consen 559 -----S---------FDA---------SP-YVKT-----------------------------------------MYDCT 573 (1233)
T ss_pred -----c---------CCC---------Ch-hHHH-----------------------------------------HHHHH
Confidence 0 000 00 0000 01112
Q ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhh---hChhHHH
Q 000159 643 VRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA---VGPGFIF 719 (2013)
Q Consensus 643 v~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~---~~~~~Vl 719 (2013)
++-|. -+|+...|.+.++.++..++..++++.......+++-+++|+++.-+|-.|.++|+.++.. ++...++
T Consensus 574 l~rL~----a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l 649 (1233)
T KOG1824|consen 574 LQRLK----ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVL 649 (1233)
T ss_pred HHHHh----cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhH
Confidence 22221 2677888999999999998888888888888999999999999999999999999999874 3333444
Q ss_pred HHHHHHhhh--CCC-hhHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChh
Q 000159 720 ERLYKIMKD--HKN-PKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (2013)
Q Consensus 720 ~~L~~~l~~--~Kn-pKv~~~~l~~L~~li~~fG~~~l~---~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~ 793 (2013)
..+++.+.+ -|| -+.+.+++..+..+++.+|.. +. +..++..+..+ +..++..|-+.|..++.++...-...
T Consensus 650 ~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~-~~~~~~e~vL~el~~L-isesdlhvt~~a~~~L~tl~~~~ps~ 727 (1233)
T KOG1824|consen 650 TEILPELASFLRKNQRALRLATLTALDKLVKNYSDS-IPAELLEAVLVELPPL-ISESDLHVTQLAVAFLTTLAIIQPSS 727 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 444443311 243 456889999999999998753 33 34566777777 88889999999999999887654443
Q ss_pred HHhhhhhccHHHHHHHH-------------HHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHH
Q 000159 794 IKGFLADVKPALLSALD-------------AEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (2013)
Q Consensus 794 l~~~L~~lkp~ll~~Le-------------~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~ 860 (2013)
+....+.+-+.++..+. .-|+.+.....+ .++-..+...++...++
T Consensus 728 l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~---------------------~l~y~~l~s~lt~PV~~ 786 (1233)
T KOG1824|consen 728 LLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEP---------------------DLDYISLLSLLTAPVYE 786 (1233)
T ss_pred HHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCC---------------------CccHHHHHHHHcCCccc
Confidence 33222222222222222 122222111100 01100011111111111
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHH
Q 000159 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2013)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL--~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ll 938 (2013)
.-.|. .-+.|.-.+..++..- ....+.--..+..-|..-+ ..+|..++..|+-.+|++....+.. +...+.
T Consensus 787 ~~~~~---l~kqa~~siA~cvA~L-t~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s---~~~e~~ 859 (1233)
T KOG1824|consen 787 QVTDG---LHKQAYYSIAKCVAAL-TCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS---PQNELK 859 (1233)
T ss_pred ccccc---hhHHHHHHHHHHHHHH-HHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC---cchhhH
Confidence 11221 1223333333332210 1111211123333333333 3556677788888888876543322 234555
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHH-HHHHhccCCCC---CChhhhH
Q 000159 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDW-LSKQLTGLSGF---PDAAHLL 1014 (2013)
Q Consensus 939 p~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~-L~~~l~~~~~~---~~~~~ll 1014 (2013)
..++++|+.....|+.||..||+.+.- -.+..++|.|.+.+.+. | -|++++.+ +.+++...... +.+..+-
T Consensus 860 ~~iieaf~sp~edvksAAs~ALGsl~v-gnl~~yLpfil~qi~sq---p-k~QyLLLhSlkevi~~~svd~~~~~v~~IW 934 (1233)
T KOG1824|consen 860 DTIIEAFNSPSEDVKSAASYALGSLAV-GNLPKYLPFILEQIESQ---P-KRQYLLLHSLKEVIVSASVDGLKPYVEKIW 934 (1233)
T ss_pred HHHHHHcCCChHHHHHHHHHHhhhhhc-CchHhHHHHHHHHHhcc---h-HhHHHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 688999999999999999999998742 23678999998888754 2 37777666 66666544332 2334444
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHH
Q 000159 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (2013)
Q Consensus 1015 ~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~ 1051 (2013)
.-+.+.++.....+|....+||+.+.-. .++.+.+.
T Consensus 935 ~lL~k~cE~~eegtR~vvAECLGkL~l~-epesLlpk 970 (1233)
T KOG1824|consen 935 ALLFKHCECAEEGTRNVVAECLGKLVLI-EPESLLPK 970 (1233)
T ss_pred HHHHHhcccchhhhHHHHHHHhhhHHhC-ChHHHHHH
Confidence 4466666666667799999999876543 44444444
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-17 Score=210.62 Aligned_cols=834 Identities=17% Similarity=0.188 Sum_probs=505.8
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh-hHh
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ 366 (2013)
.+...+-+.+=..|++|-+.+..+...++ +...|...+. -.+..++..|+-.+..+....=+..... -..
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 34556677777889999999988765443 5667777777 7788899999888888887755554433 345
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000159 367 LLPVLLEKL-KEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (2013)
Q Consensus 367 llp~LL~kl-kdkk~~V~~aa~~aL~ai~~~--~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (2013)
+-..||..+ +|..+.||.+....+..++++ .+ ..+++++.+..+.++.|++.|+.++..|..+....+. .+.+++
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~ 157 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHL 157 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhH
Confidence 566666665 899999999999999999988 23 5788999999999999999999999999887665543 356788
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-chhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCC
Q 000159 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (2013)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~G-e~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s 522 (2013)
+.+.+.+.+|+.|+...||-+|.++++++..... +....+.+..+-|....-+.+.+...
T Consensus 158 ~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~------------------- 218 (1075)
T KOG2171|consen 158 DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG------------------- 218 (1075)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc-------------------
Confidence 9999999999999999999999999999998885 33333333333332222222221100
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccC
Q 000159 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (2013)
Q Consensus 523 ~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l 602 (2013)
.++
T Consensus 219 --------------------------------------------------------------------d~~--------- 221 (1075)
T KOG2171|consen 219 --------------------------------------------------------------------DDD--------- 221 (1075)
T ss_pred --------------------------------------------------------------------chH---------
Confidence 000
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc-chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC----
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF---- 677 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~-~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~---- 677 (2013)
.=..+++.|.+++...... .+....++.+....-+=++-+-.+++.+|+++..+++..+..
T Consensus 222 --------------~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~ 287 (1075)
T KOG2171|consen 222 --------------AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKL 287 (1075)
T ss_pred --------------HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhc
Confidence 0011222223333322111 112222222211111124556678899999999988875432
Q ss_pred ---chhhHHHHHHHHHhhhcCh--------------hhhHHHHHHHHHHHhhhChhHHHHHHHHHh---hhCCChhHHHH
Q 000159 678 ---PKKCVVLCLLGISERVADI--------------KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSE 737 (2013)
Q Consensus 678 ---~~~~~~~il~~LveKlgD~--------------K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l---~~~KnpKv~~~ 737 (2013)
....+..++-...+-..|. -....|.++|..++-..++..|++.+++.+ ..+.+||-|.+
T Consensus 288 ~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~A 367 (1075)
T KOG2171|consen 288 ALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHA 367 (1075)
T ss_pred hhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHH
Confidence 2233333333333333441 146778999999999999999988888754 56899999999
Q ss_pred HHHHHHHHHHHhCCCC-CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh-hhccHHHHHHHHHHHhh
Q 000159 738 GILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEK 815 (2013)
Q Consensus 738 ~l~~L~~li~~fG~~~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~ef~k 815 (2013)
++..|+.+.+..+-.- -++..+++.+... |.|++|.||.+|.+++|.|...+++.+..+. +.++|++
T Consensus 368 aL~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL---------- 436 (1075)
T KOG2171|consen 368 ALLALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPAL---------- 436 (1075)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHH----------
Confidence 9999999988433110 1467788888885 9999999999999999999988888776543 3333333
Q ss_pred CCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhccc-cCCCCCh
Q 000159 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANK-RIQPAGT 893 (2013)
Q Consensus 816 ~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~-~Wk~R~eale~l~~il~~a~~-~I~~~~~ 893 (2013)
+..+.|. +-++-..|.-.+-...+++.+ .|.|+ +
T Consensus 437 -------------------------------------------~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-L 472 (1075)
T KOG2171|consen 437 -------------------------------------------IALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY-L 472 (1075)
T ss_pred -------------------------------------------HHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH-H
Confidence 3333333 345555565566666665533 45555 5
Q ss_pred hhHHH-HHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHhcC
Q 000159 894 GELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK----KHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 894 ~eL~~-~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k----~~Vr~aa~~aL~~i~~~~g 968 (2013)
..|+. .|...+....+.|+.+++..|+.+|.+.+..|.+|.+.++|.+.+.|+..+ ..+|...++|++.+...+|
T Consensus 473 d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 473 DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhh
Confidence 88888 444445666788999999999999999999999999999999999997544 4689999999999999999
Q ss_pred chhhHHHHHHHHh---cC-----CCChhhHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhc-CCCChHHHHHHHHHHH
Q 000159 969 LDKMVPYVTTALT---DA-----KLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAM-TDKSSDVRKAAEACIV 1037 (2013)
Q Consensus 969 l~~ll~~l~~~L~---~~-----k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L-~D~~~dVR~aA~~~L~ 1037 (2013)
-+++.|...+.++ .- ....-.|...+...++.-.-++.. +-+...++|+++.. .|..-..
T Consensus 553 ke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~--------- 623 (1075)
T KOG2171|consen 553 KEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL--------- 623 (1075)
T ss_pred hhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC---------
Confidence 7777774322221 10 001123444333332222222221 12233444444432 1221110
Q ss_pred HHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCc
Q 000159 1038 EILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPES 1117 (2013)
Q Consensus 1038 ~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~ 1117 (2013)
++++..... ..++.-.. .+-.+. . ..+ +-+.+.
T Consensus 624 -----~d~~d~e~~-~~~~~~e~------~~~~~~------------------e--~~~-----------I~Tsvl---- 656 (1075)
T KOG2171|consen 624 -----SDEEDEEEE-QDLDGWEV------VELGDK------------------E--NIG-----------IRTSVL---- 656 (1075)
T ss_pred -----cCchhhhhc-cccccchh------hccCCc------------------e--eee-----------eeehhH----
Confidence 022222111 11111000 000000 0 000 000000
Q ss_pred ccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHh
Q 000159 1118 IMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKA 1197 (2013)
Q Consensus 1118 ~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~ 1197 (2013)
.+-+.....+-.+ -...|-.|. .++|+-...| +....|.-.-..|..|++.|-..
T Consensus 657 ----~eK~~A~~~Lv~~----------a~~lk~~F~----pYve~v~~l~-------v~~l~f~fhdgVR~aa~~~~p~l 711 (1075)
T KOG2171|consen 657 ----DEKETACEALGEY----------AKELKEAFA----PYVEQVVELM-------VPLLKFYFHDGVRKAAAESMPQL 711 (1075)
T ss_pred ----HHHHHHHHHHHHH----------HHhhhhhhh----hHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHH
Confidence 0000000000000 001122233 2222221111 22233322223455555555443
Q ss_pred c-------ccChhhHHHHHHHHHHHHHHhh-cCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhh----
Q 000159 1198 L-------PSIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS---- 1265 (2013)
Q Consensus 1198 l-------~~~~~~~i~~lDlllk~~~lr~-~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~---- 1265 (2013)
+ ...+..+....+-+++-+..-+ .+.-+.|+..+|+-+...+..+.... |.+.+...++-.+..++
T Consensus 712 l~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~--L~~~~~~~~~~~~~~~~l~~~ 789 (1075)
T KOG2171|consen 712 LTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNC--LNEDGLEALLGGLLAQLLQHF 789 (1075)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCccc--CCcHHHHHHHHHHHHHHHHHH
Confidence 3 2344445554555555554443 45688999999999998888877653 77777777776664443
Q ss_pred ---cC---------ChHHHHHHHH----HHHHHHhhcc-------Cc------cccHHHHHhhhcCCChhhHHHHHHHHH
Q 000159 1266 ---GH---------NIEKVREKMR----ELTKQIVNFY-------SA------TKTLPYILEGLRSKNNRTRIECVDLVG 1316 (2013)
Q Consensus 1266 ---Gd---------~k~~vr~~v~----~il~~i~~v~-------p~------skvf~~l~~gl~sKN~r~R~ecl~~l~ 1316 (2013)
+| -.+..++.+. .++..++.+. -. ..++|++..-+++++.--|+=.+..++
T Consensus 790 ~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~ 869 (1075)
T KOG2171|consen 790 KRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFD 869 (1075)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 22 1111222222 1333333322 11 257888777777766555888888899
Q ss_pred HHHHhhCCCcccc-cchHHHHHHhhcCCChHHHHHHHHHHHHHHHHhChHHHHHhhcCCHHHHHh
Q 000159 1317 FLIDHHGAEISGQ-LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSM 1380 (2013)
Q Consensus 1317 ~li~~~g~~~~~~-~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~vg~Ls~~~~s~ 1380 (2013)
.+|+..|-..... ..-++.+...+.|.+++||++|---++.+-.+.|+.--..+..+.+..-.+
T Consensus 870 d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~ 934 (1075)
T KOG2171|consen 870 DLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQV 934 (1075)
T ss_pred HHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 9999988753211 223599999999999999999999999999999988333333333433333
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-15 Score=197.76 Aligned_cols=878 Identities=16% Similarity=0.167 Sum_probs=469.8
Q ss_pred HHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhh--
Q 000159 49 RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE-- 124 (2013)
Q Consensus 49 ~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~--~k~~~k~~A~~~ll~~~E~~-- 124 (2013)
+|.+....+-..+++.|+.-+|.|+-.|..+....+.....+..++. .|..+|++ +.+ +|-.|...+..|++.-
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~-~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL-RLFSQTMTDPSSP-VRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH-HHHHHhccCCcch-HHHHHHHHHHHHHHHhcc
Confidence 57777777888999999999999999999998887665555555554 56678887 455 9988887777777652
Q ss_pred hhh--hHHHHHHH--------HhhcCChhhHHHHHHHHHHHHHHhCCCCcC--hhHHHHhhhhhhcCC--ChHHHHHHHH
Q 000159 125 AVD--VFLDVMEK--------AIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKG 190 (2013)
Q Consensus 125 ~~~--~v~~~L~~--------~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~--~k~il~~l~~ll~~~--d~~VR~~a~~ 190 (2013)
+.. .-+..+++ ....-+-+....++.+|.+++...+. .+. +..++....++.++. |..+|..|..
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 121 11222333 23445556678888888888887655 332 345666666777766 7889999999
Q ss_pred HHHHHHHhhCCchhhH--HHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCC-CCCCCCCCCC
Q 000159 191 LTLELCRWIGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPG-PSEESTADVP 267 (2013)
Q Consensus 191 l~~ely~~lG~~~l~~--~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~-~~~~~~~~~~ 267 (2013)
+++.+.++- +...|. .+...|-++.++.. ++ ...+. -..++..+++
T Consensus 272 ~ivs~~e~A-p~~~k~~~~~~~~lv~~~l~~m-----------te-------------------~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 272 FLVSLSEYA-PAMCKKLALLGHTLVPVLLAMM-----------TE-------------------EEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHhh-HHHhhhchhhhccHHHHHHHhc-----------CC-------------------cccchhhccccccccc
Confidence 999999882 111110 01111111111111 00 00000 0000000111
Q ss_pred CCCCCCCCC-----------CcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc
Q 000159 268 PEIDEYELV-----------DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT 335 (2013)
Q Consensus 268 ~~iD~~dl~-----------~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~~~~~~l~~~L~k~l~ 335 (2013)
+.-++|... .+.-|+..+= +.+...+.+.+|++|+.||..|..+.. ..+...+.+..|++.+...+.
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~ 399 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN 399 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Confidence 112233221 2222332221 345556899999999999999999884 566666688999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH-HHHHHhcc-CcHHHHHHHHHHHHHHHHhcCCC------hHhHHH-
Q 000159 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP-VLLEKLKE-KKPTVAESLTQTLQAMHKAGCLN------LVDVVE- 406 (2013)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp-~LL~klkd-kk~~V~~aa~~aL~ai~~~~~~~------l~~il~- 406 (2013)
|.+..|+..||++|+.++..+.+.++.+....+| .|+..+.+ .++.|..++..|+..++.. |.. ++.+++
T Consensus 400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~ 478 (1075)
T KOG2171|consen 400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEK 478 (1075)
T ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987776666 55555544 3557888899999988876 422 344555
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhCchhHH
Q 000159 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT----PEVRDAAFSVLAAIAKSVGMRPLE 482 (2013)
Q Consensus 407 ~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~----~~VR~aA~~al~~l~~~~Ge~~~~ 482 (2013)
.+...+++.++.+|..++..|+.+..... ..|.+|.+.++|.+.++|...+ .++|-...+|++.+...+|.+.|.
T Consensus 479 ~l~~L~~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~ 557 (1075)
T KOG2171|consen 479 KLLLLLQSSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFL 557 (1075)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 22334467889999999999998766544 3477899999999999985444 678888899999999999987777
Q ss_pred HHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000159 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 562 (2013)
Q Consensus 483 ~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~ 562 (2013)
++...|-..... .. ++......|.. +.... .-+ ..-+-...-+.+--|.. -|+-.+....++
T Consensus 558 ~~a~eliqll~~----~~---~~~~~~dd~~~-------sy~~~--~wa-rmc~ilg~~F~p~L~~V-mppl~~ta~~~p 619 (1075)
T KOG2171|consen 558 PLAEELIQLLLE----LQ---GSDQDDDDPLR-------SYMIA--FWA-RMCRILGDDFAPFLPVV-MPPLLKTARLDP 619 (1075)
T ss_pred HhHHHHHHHHHh----hc---ccchhhccccH-------HHHHH--HHH-HHHHHhchhhHhHHHHH-hHHHHHhhccCC
Confidence 776654322111 10 11110000000 00000 000 00000000000000000 000000000000
Q ss_pred CCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHH-------hhhcCCCHHHHHHHHHHHHHHHHhccC-
Q 000159 563 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV-------GQLKSAVWKERLEAISSLRQQVEAVQN- 634 (2013)
Q Consensus 563 ~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~-------~~L~s~~Wk~Rl~ale~L~~~v~~~~~- 634 (2013)
...++.++.++...+..+-+.+ =++..+-.-++..|.+.|..+-.....
T Consensus 620 -----------------------~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~ 676 (1075)
T KOG2171|consen 620 -----------------------DVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEA 676 (1075)
T ss_pred -----------------------cccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhh
Confidence 0011111111111111111110 012222233334444444433322111
Q ss_pred cchHHHHHHHHHhcCCCCc-ccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhh
Q 000159 635 LDQSVEILVRLVCMLPGWS-EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713 (2013)
Q Consensus 635 ~~~~~~~lv~~L~~~pgl~-DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~ 713 (2013)
-.++.+-++..+. |.++ .-+--|+..+ ..++|.++...--.--+..+ .+..+
T Consensus 677 F~pYve~v~~l~v--~~l~f~fhdgVR~aa-------------------~~~~p~ll~~~~~A~~~~p~--~l~~l---- 729 (1075)
T KOG2171|consen 677 FAPYVEQVVELMV--PLLKFYFHDGVRKAA-------------------AESMPQLLTCALKACQGGPE--YLKQL---- 729 (1075)
T ss_pred hhhHHHHHHHHHH--HHHHhhhhhHHHHHH-------------------HHHHHHHHHHHHHHhccChH--HHHHH----
Confidence 0111111111000 0000 0001122222 23333333210000000000 00000
Q ss_pred ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChh
Q 000159 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (2013)
Q Consensus 714 ~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~ 793 (2013)
-+++++.++..+..-..+.+..+.++.+.+.++.+|...++...+-..+... + .. + ..-+..++..
T Consensus 730 -~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~-~--------~~---~-l~~~~~~~~r 795 (1075)
T KOG2171|consen 730 -WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGL-L--------AQ---L-LQHFKRMQDR 795 (1075)
T ss_pred -HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH-H--------HH---H-HHHHHHHHhh
Confidence 1234444445544456778889999999999999997655433322222111 0 00 0 0000000100
Q ss_pred H-HhhhhhccH-------HHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCC
Q 000159 794 I-KGFLADVKP-------ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP 865 (2013)
Q Consensus 794 l-~~~L~~lkp-------~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~ 865 (2013)
. ..+-++... .+=+.|.+++.++.. +-++. .++ +..| ....+-|.+...+.++
T Consensus 796 ~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~-------~l~k~-------~k~--~f~p---~f~~~~p~iv~~l~~~ 856 (1075)
T KOG2171|consen 796 QEEDDEEDDDIEEEEDLDEQDAYLLDAISDILA-------ALAKA-------LKG--SFLP---FFENFLPLIVKLLKSK 856 (1075)
T ss_pred hhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHH-------HHHHH-------ccc--cccH---HHHHHHHHHHHHHhcC
Confidence 0 000000000 000011111111100 00000 000 0000 1222445556666666
Q ss_pred C-hHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHH
Q 000159 866 D-WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2013)
Q Consensus 866 ~-Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~ 944 (2013)
+ |. |.=|+-.+.+++..+.+...++ +..+.+.+...+.|+.+-|++.|..-+|.+|.-.|..+.+.+...+|.++..
T Consensus 857 ~~~~-r~~av~~~~d~ie~~~~a~~~~-~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~ 934 (1075)
T KOG2171|consen 857 KTVA-RQWAVCIFDDLIEGCGEASAKY-KERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQV 934 (1075)
T ss_pred CcHH-HHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 4 77 9999999999998654444333 5778888899999999999999999999999999999999999999999988
Q ss_pred hCCCcH---HHHHHHHHHHHHHHH---hc----CchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC---C---C
Q 000159 945 LGDNKK---HMRECTLTVLDAWLA---AV----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---F---P 1008 (2013)
Q Consensus 945 L~D~k~---~Vr~aa~~aL~~i~~---~~----gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~---~ 1008 (2013)
+..... .-+.+..+++.++++ +. ..++++|.+...|-... +-+.-..+..+|...++.... . .
T Consensus 935 iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~-D~eEa~~iy~~l~~L~e~n~p~v~~~~n~ 1013 (1075)
T KOG2171|consen 935 LQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKE-DKEEAVPIYTFLSDLYESNHPIVLGPNNQ 1013 (1075)
T ss_pred HcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCcc-chhhhhhHHHHHHHHHHhCCCeeeCCCcc
Confidence 876443 344444455555544 33 25677776666654211 122334577778877776443 1 1
Q ss_pred ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHH
Q 000159 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERI 1067 (2013)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~-G~~~~~~~l~~L~~~~~~~i~~~l 1067 (2013)
.+..++.-+...+.+.+-+-|..+...+..+-... ..+.+...++.|++..+..+++.+
T Consensus 1014 ~ip~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~~~~~~~~~~~~L~~~~~~~lq~~~ 1073 (1075)
T KOG2171|consen 1014 NIPKILSVCAESLADKKIEPRSTLARVIEILKQFLAPPSQFAALLATLPPDQQQALQAVL 1073 (1075)
T ss_pred cchHHHHHHHhhhhccCCCccchHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHh
Confidence 22333333444555554444444443333332222 345677788889999888887754
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=220.98 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=148.5
Q ss_pred cCcchhhhhhhccCCHHHHHHHHHHHHHHhcCC--CCCCCChHHHH----HHHHHHhcccCHHHHHHHHHHHHHHHHHhh
Q 000159 284 PLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVC----RTLKKLITDVNIAVAVEAIQAIGNLARGLR 357 (2013)
Q Consensus 284 kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~p--ki~~~~~~~l~----~~L~k~l~D~N~~V~~~A~~~l~~La~~L~ 357 (2013)
.+. +.|.+...+.+|++|.+||+.|+.++.+. ......|.+.+ ..+.+.+.|.|+.|+..||.+++.|+..++
T Consensus 7 ~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 7 EIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 444 56777789999999999999999988543 22222333333 366677889999999999999999999999
Q ss_pred hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH-HHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-
Q 000159 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETSS- 435 (2013)
Q Consensus 358 ~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~i-l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~- 435 (2013)
..|++|+..++|.|+++++++|+.|++++..||.+++.+ |.....+ ++.+..++++|||.+|..++.|+..++..++
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES-CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT-S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999997 4314566 7888889999999999999999999999988
Q ss_pred -hhHHHH--hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHH
Q 000159 436 -KAAVLK--VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (2013)
Q Consensus 436 -~~~l~~--~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki 496 (2013)
...+.. .++.+++.+.++++|++++||++|+++|+.+++++|++ ...++..||+..++.|
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~-a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER-AESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH-H---------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh-hccchhcchhcccccC
Confidence 333432 35889999999999999999999999999999999998 5778899999888766
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-17 Score=190.36 Aligned_cols=208 Identities=21% Similarity=0.324 Sum_probs=143.7
Q ss_pred ccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC----hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhCh
Q 000159 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (2013)
Q Consensus 853 ~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~----~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~ 928 (2013)
.+...|.+...+.+|+.|.+|++.|+.++.+....-.+.. +.+++..+...+.|.|..|+..||.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 3555676677889999999999999999985311111111 233345666788999999999999999999999999
Q ss_pred hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhh-HHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC
Q 000159 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (2013)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-l~~l-l~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2013)
.|++|+..++|.++++++|+++.||++|..||.+++.+++ ...+ ++.+...+.++ ||.+|..++.|+...+..++.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999 5666 67777778777 799999999999999999882
Q ss_pred -CC------ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHH
Q 000159 1007 -FP------DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1063 (2013)
Q Consensus 1007 -~~------~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i 1063 (2013)
.. .+..+++.+..++.|++++||++|..++..++.++|+.+ ...+..|+|..++.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 11 124566779999999999999999999999999999986 556799999887765
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-11 Score=155.14 Aligned_cols=811 Identities=17% Similarity=0.197 Sum_probs=462.2
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hhhhhHHHHHHHHhhc-CChh
Q 000159 68 VQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---EAVDVFLDVMEKAIKN-KVAK 143 (2013)
Q Consensus 68 vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~---~~~~~v~~~L~~~~~~-KnpK 143 (2013)
++--.++.+..++.+.+.-....=..+...++...-..|..+|.+|+-++-.+.-. +...++++.|++++.+ -++-
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~ 228 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMS 228 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchH
Confidence 67777888888887766522222122343444442225899999997776655533 2346788999999875 4566
Q ss_pred hHHHHHHHHHHHHHHhCCCC-cChhHHHHhhhhhh---cCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHH
Q 000159 144 AVVPAIDVMFQALSEFGAKI-IPPKRILKMLPELF---DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKE 219 (2013)
Q Consensus 144 v~~~~l~~L~~~l~~fG~~~-i~~k~il~~l~~ll---~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~ke 219 (2013)
.+-.-+++|..+.+.-|... -.+..+++.+...+ +..|...|+.+.+.+..+.++...+ +-++. . .+ ...
T Consensus 229 ~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e-i~p~~-p---ei-~~l 302 (1233)
T KOG1824|consen 229 ATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE-ILPHV-P---EI-INL 302 (1233)
T ss_pred HHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh-hcccc-h---HH-HHH
Confidence 66677778877777655421 12445666776666 8889999999999999888888764 22222 1 11 111
Q ss_pred HHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccc----------------cc
Q 000159 220 LEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDI----------------LT 283 (2013)
Q Consensus 220 Le~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdI----------------l~ 283 (2013)
+-..+ .+. |- |. .+.+ +. ++....+ ++++++.-|.| .|..|+ .+
T Consensus 303 ~l~yi-sYD----PN-y~---yd~~-eD-------ed~~~~e-d~eDde~~deY--sDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 303 CLSYI-SYD----PN-YN---YDTE-ED-------EDAMFLE-DEEDDEQDDEY--SDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHHHh-ccC----CC-CC---CCCc-cc-------hhhhhhh-ccccchhcccc--ccccchhHHHHHHHHHHHHHHHhc
Confidence 11111 111 10 00 0000 00 0000000 00111111233 222232 11
Q ss_pred cCc-chhhhhhhcc---CCHHHHHHHHHH-----HHHHhc-CCCCC--------------C-------CChHHHHHHHHH
Q 000159 284 PLE-KSGFWEGVKA---TKWSERKDAVAE-----LTKLAS-TKRIA--------------P-------GDFTEVCRTLKK 332 (2013)
Q Consensus 284 kl~-~~~f~~~l~s---~kWkeR~eaL~~-----L~~l~~-~pki~--------------~-------~~~~~l~~~L~k 332 (2013)
..+ .++||..+.- ..++||.|.+.. ...++. .+... + +....++++|.+
T Consensus 363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~ 442 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQK 442 (1233)
T ss_pred cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHH
Confidence 111 1467666544 678888887664 223332 22111 0 122456777777
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHH--HHHHHHHHHH-HHHHhcC----CChHhHH
Q 000159 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQ-AMHKAGC----LNLVDVV 405 (2013)
Q Consensus 333 ~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~--V~~aa~~aL~-ai~~~~~----~~l~~il 405 (2013)
.+.+...+-...++..+..+...++....+|...++|++.-.|-|+... ..-.+...+- ++..++| ..++.+.
T Consensus 443 qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls 522 (1233)
T KOG1824|consen 443 QLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALS 522 (1233)
T ss_pred HHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhh
Confidence 7776666666777888999999999999999999999999999998653 2222222222 2333222 1234566
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhcCh----h--HHHHhhhhHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHhC
Q 000159 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSK----A--AVLKVHKDYVPICMECL--NDGTPEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 406 ~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~----~--~l~~~l~~l~p~l~k~l--~Ds~~~VR~aA~~al~~l~~~~G 477 (2013)
+.+..+..+.-+++-.+++.....++....+ . ...++.+.+.....+.+ .|.|.+||+.|..|++.+...+|
T Consensus 523 ~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg 602 (1233)
T KOG1824|consen 523 PPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG 602 (1233)
T ss_pred hHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh
Confidence 6777888888899999988887776654321 1 12345566666666655 79999999999999999999999
Q ss_pred chhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 000159 478 MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 557 (2013)
Q Consensus 478 e~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~ 557 (2013)
+. ...+++..-+.-.+++..-+-.. ++++.. +.+.
T Consensus 603 D~-l~~eL~~~L~il~eRl~nEiTRl----------------------------~AvkAl--t~Ia-------------- 637 (1233)
T KOG1824|consen 603 DF-LGNELPRTLPILLERLGNEITRL----------------------------TAVKAL--TLIA-------------- 637 (1233)
T ss_pred hh-hhhhhHHHHHHHHHHHhchhHHH----------------------------HHHHHH--HHHH--------------
Confidence 53 44444443333333332211000 000000 0000
Q ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH-HHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc
Q 000159 558 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 636 (2013)
Q Consensus 558 ~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~-ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~ 636 (2013)
.+ +..++. +.+.+ +-+++...|...+-+.|++.+..+..+++......
T Consensus 638 ---------------------~S-----~l~i~l~~~l~~-----il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~ 686 (1233)
T KOG1824|consen 638 ---------------------MS-----PLDIDLSPVLTE-----ILPELASFLRKNQRALRLATLTALDKLVKNYSDSI 686 (1233)
T ss_pred ---------------------hc-----cceeehhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00 001110 11111 12566677777788889998888888887743322
Q ss_pred h--HHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhh
Q 000159 637 Q--SVEILVRLVCMLPG-WSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713 (2013)
Q Consensus 637 ~--~~~~lv~~L~~~pg-l~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~ 713 (2013)
+ ..+.++. ..|+ +.|+..+|.+.++.++..++...+...-.....+++.++.-+..+-+...|..++..+.++.
T Consensus 687 ~~~~~e~vL~---el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~al 763 (1233)
T KOG1824|consen 687 PAELLEAVLV---ELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQAL 763 (1233)
T ss_pred cHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHH
Confidence 1 1233332 2233 68999999999999999988765543333445566666666555555555544444443321
Q ss_pred ----Chh----------------------------------------------HHHHHHHHHhhh-CCChhHHHHHHHHH
Q 000159 714 ----GPG----------------------------------------------FIFERLYKIMKD-HKNPKVLSEGILWM 742 (2013)
Q Consensus 714 ----~~~----------------------------------------------~Vl~~L~~~l~~-~KnpKv~~~~l~~L 742 (2013)
.++ .+...+...+.+ ..+..++.-++..+
T Consensus 764 V~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~Lsl 843 (1233)
T KOG1824|consen 764 VITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSL 843 (1233)
T ss_pred HhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhh
Confidence 010 011111111100 11222222233222
Q ss_pred HHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHH----------
Q 000159 743 VSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE---------- 812 (2013)
Q Consensus 743 ~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e---------- 812 (2013)
.++=..++. .....+-..+..+ |++++.+|+.||.-+||.+.. |. +..|| |-++.+|+.+
T Consensus 844 GElgr~~~~--s~~~e~~~~iiea-f~sp~edvksAAs~ALGsl~v--gn-l~~yL----pfil~qi~sqpk~QyLLLhS 913 (1233)
T KOG1824|consen 844 GELGRRKDL--SPQNELKDTIIEA-FNSPSEDVKSAASYALGSLAV--GN-LPKYL----PFILEQIESQPKRQYLLLHS 913 (1233)
T ss_pred hhhccCCCC--CcchhhHHHHHHH-cCCChHHHHHHHHHHhhhhhc--Cc-hHhHH----HHHHHHHhcchHhHHHHHHH
Confidence 222221111 1123455556666 999999999999999998863 32 22232 3333333321
Q ss_pred HhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC
Q 000159 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892 (2013)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~ 892 (2013)
|..+-. +.+. +-..|.+ .+|..-|++.++...-=.|.--.|-++.++. .+
T Consensus 914 lkevi~----------~~sv---------d~~~~~v---~~IW~lL~k~cE~~eegtR~vvAECLGkL~l--------~e 963 (1233)
T KOG1824|consen 914 LKEVIV----------SASV---------DGLKPYV---EKIWALLFKHCECAEEGTRNVVAECLGKLVL--------IE 963 (1233)
T ss_pred HHHHHH----------Hhcc---------chhhhhH---HHHHHHHHHhcccchhhhHHHHHHHhhhHHh--------CC
Confidence 111100 0000 0001110 1133344555554443335544455554442 22
Q ss_pred hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--ch
Q 000159 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LD 970 (2013)
Q Consensus 893 ~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~ 970 (2013)
-..|.+.|+.++.-...+.+..++..+.....--.+.++.+.+..+..++..+.|....||+.|..+++..+.+=+ +.
T Consensus 964 pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIr 1043 (1233)
T KOG1824|consen 964 PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIR 1043 (1233)
T ss_pred hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHH
Confidence 3678999999997777777777777777666666778999999999999999999999999999999999988754 46
Q ss_pred hhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 971 ~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
.++|.+.+.|.++ ..+|.+++.-. ++++- +.--|-.-|+|++|++|+-++...
T Consensus 1044 DllpeLLp~Ly~e---TkvrkelIreV-----eMGPF-----------KH~VDdgLd~RKaaFEcmytLLds 1096 (1233)
T KOG1824|consen 1044 DLLPELLPLLYSE---TKVRKELIREV-----EMGPF-----------KHTVDDGLDLRKAAFECMYTLLDS 1096 (1233)
T ss_pred HHHHHHHHHHHHh---hhhhHhhhhhh-----cccCc-----------cccccchHHHHHHHHHHHHHHHHh
Confidence 7888888888765 35677765432 12321 223566778999999999887643
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-13 Score=170.86 Aligned_cols=515 Identities=17% Similarity=0.173 Sum_probs=335.2
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcCC-ChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHH
Q 000159 138 KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ-DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (2013)
Q Consensus 138 ~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~-d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q 216 (2013)
.+..+.+...-+.+...++.+.|-+.+ ..+++..-..++|. +.++|+....+.+.+-+|+... +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v--~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~- 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNV--LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI- 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHH--HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh-
Confidence 455666777777888888888888643 23333333333322 8899999888888887777531 12221
Q ss_pred HHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhcc
Q 000159 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA 296 (2013)
Q Consensus 217 ~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s 296 (2013)
.-++..++.. .+|....+..-..=.. +-... . +..+...++ +...+.++.
T Consensus 96 -~~~~~~~~~~---~tps~~~q~~~~~~l~---~~~~~---------------~---~~~~~~~~l-----~~l~~ll~~ 145 (569)
T KOG1242|consen 96 -SIIEILLEEL---DTPSKSVQRAVSTCLP---PLVVL---------------S---KGLSGEYVL-----ELLLELLTS 145 (569)
T ss_pred -HHHHHHHHhc---CCCcHHHHHHHHHHhh---hHHHH---------------h---hccCHHHHH-----HHHHHHhcc
Confidence 1223333332 2343221111000000 00000 0 000111111 355667889
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHH-HHHHHHHHHHHhhhcchhhhHhHHHHHHHHh
Q 000159 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (2013)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~-A~~~l~~La~~L~~~f~~~~~~llp~LL~kl 375 (2013)
.+..+|+.|...+..+.++.-+....=..++..|.+.+.|.+....++ +..+.......||+.|+||...++|.+|.++
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~ 225 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF 225 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh
Confidence 999999999999999998766665444578899999999998888885 7888888889999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh
Q 000159 376 KEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (2013)
Q Consensus 376 kdkk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l 454 (2013)
+|+-+.||+++..|.++++.. +..++..+++.++.++....|+.|..+++.+. ++..+.+.++..+++.++|.+.+.|
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHHHH
Confidence 999999999999999999985 23456788999999988889999999999999 6777777788889999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccc
Q 000159 455 NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV 534 (2013)
Q Consensus 455 ~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 534 (2013)
+|++++||++|.+|+-.+..++.+..+.++++.|- +++.. |+...+
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Ll--------d~l~d---------p~~~~~----------------- 350 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLL--------DALAD---------PSCYTP----------------- 350 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------HHhcC---------cccchH-----------------
Confidence 99999999999999999999999988888887643 33321 000000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCC
Q 000159 535 RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 614 (2013)
Q Consensus 535 ~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~ 614 (2013)
..--+ ++.+ ... +.+.+ ...+++-+-+...|..++
T Consensus 351 -e~~~~-L~~t------------------------------tFV---~~V~~----------psLalmvpiL~R~l~eRs 385 (569)
T KOG1242|consen 351 -ECLDS-LGAT------------------------------TFV---AEVDA----------PSLALMVPILKRGLAERS 385 (569)
T ss_pred -HHHHh-hcce------------------------------eee---eeecc----------hhHHHHHHHHHHHHhhcc
Confidence 00000 0000 000 01111 112233444455554443
Q ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc
Q 000159 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (2013)
Q Consensus 615 Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg 694 (2013)
.-.+..++..+.++ ..+++. +.-....+..++|++=..+-
T Consensus 386 t~~kr~t~~IidNm---------------------------------------~~LveD-p~~lapfl~~Llp~lk~~~~ 425 (569)
T KOG1242|consen 386 TSIKRKTAIIIDNM---------------------------------------CKLVED-PKDLAPFLPSLLPGLKENLD 425 (569)
T ss_pred chhhhhHHHHHHHH---------------------------------------HHhhcC-HHHHhhhHHHHhhHHHHHhc
Confidence 33333332222211 111110 01011234455565555555
Q ss_pred C--hhhhHHHHHHHHHHHhhhCh---hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHH-HHHHhcCC
Q 000159 695 D--IKTRAHAMKCLTTFSEAVGP---GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI-DFCKDTGL 768 (2013)
Q Consensus 695 D--~K~r~~a~e~L~~l~e~~~~---~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li-~~l~~~gL 768 (2013)
| +-+|..+..+|..+.|..+. +.+.+.+...+...|.-+-+.+++..+..++...|.... ..++ +.+..+..
T Consensus 426 d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~--~~~~~~~~a~~~~ 503 (569)
T KOG1242|consen 426 DAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV--EDILPEILANASS 503 (569)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH--HHHHHHHHHHHhh
Confidence 5 46788888888777775543 446666777666678888899999999999988877532 2222 22222213
Q ss_pred CCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhh
Q 000159 769 QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (2013)
Q Consensus 769 ~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k 815 (2013)
...++.+|..-+.++..+-...|..+..|+.++.+.+++.+.+.-+.
T Consensus 504 ~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~ 550 (569)
T KOG1242|consen 504 VLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEK 550 (569)
T ss_pred ccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCc
Confidence 34456699999999888888888888999988888888887765444
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.1e-12 Score=153.03 Aligned_cols=692 Identities=15% Similarity=0.172 Sum_probs=421.2
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH----Hhhhcc-hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000159 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR----GLRTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (2013)
Q Consensus 322 ~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~----~L~~~f-~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~ 396 (2013)
++.++++.|...+.....+....|+.++..+++ .+..++ .+....++|.+|.-++...+.+|..+..|++.++-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 456777777777763333356666666666654 344443 356889999999999999999999999999987643
Q ss_pred c----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 397 G----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 397 ~----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
. ..+++.+++.+..--.+.+|.||...+..+..+++..+. .+.+++..++..+.....|.+.+|--.|++-.-++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 1 134677778777666789999999999999988876543 46688899999999999999999988888877777
Q ss_pred HHH-hCchhHHHHHhhccHHHHHHHHH-----HHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCC
Q 000159 473 AKS-VGMRPLERSIEKLDDVRRNKLSE-----MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR 546 (2013)
Q Consensus 473 ~~~-~Ge~~~~~~l~~Ld~~~~kki~e-----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~ 546 (2013)
+.. +-...+.+|+.+|-|.....+.- .+-+. .. +...++... ...|
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~---~e---------------------eD~~vpDre----eDIk 335 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKN---NE---------------------EDESVPDRE----EDIK 335 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcC---cc---------------------ccccCCchh----hhcc
Confidence 744 34557888998888765443310 00000 00 000000000 0111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCC---CCCCHHHHH----HHhhccCc--------HHHHhhhc
Q 000159 547 PVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP---SEMSLEEIE----SRLGSLIP--------ADTVGQLK 611 (2013)
Q Consensus 547 P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~---~~~S~ee~e----~~~~~~l~--------~~l~~~L~ 611 (2013)
|--. |+...+.+.-+ ....-+..++-.. ..+...-+. ..+..+++ |-+.+.|.
T Consensus 336 PRfh----------ksk~~~~~~~~--~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 336 PRFH----------KSKEHGNGEDA--DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred chhh----------hchhccCcccc--ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 1110 01111000000 0000000000000 111111122 22334444 45567889
Q ss_pred CCCHHHHHHHHHHHHHHHHh-ccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC-CCchhhHHHHHHHH
Q 000159 612 SAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGI 689 (2013)
Q Consensus 612 s~~Wk~Rl~ale~L~~~v~~-~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~-~~~~~~~~~il~~L 689 (2013)
+.+|+.|.+|+-.|+.+-++ ++-..+....++.+|.. -+.|+-.-|+.-.+=+|..+..-.. .-....+..++.++
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~--~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLS--LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH--HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 99999999999999999888 55554555555555532 2455555555443333333332111 11234677888999
Q ss_pred HhhhcCh--hhhHHHHHHHHHHHhhhChhH------HHHHHHHHh--hhCCChhHHHHHHHHHHHHHHHhCCCC--C--C
Q 000159 690 SERVADI--KTRAHAMKCLTTFSEAVGPGF------IFERLYKIM--KDHKNPKVLSEGILWMVSAVEDFGVSH--L--K 755 (2013)
Q Consensus 690 veKlgD~--K~r~~a~e~L~~l~e~~~~~~------Vl~~L~~~l--~~~KnpKv~~~~l~~L~~li~~fG~~~--l--~ 755 (2013)
+.++-|. |++++|..++..+-|..+.+. ++.++.... -++||-.+...++..|+.-+...=.+. + -
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL 561 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL 561 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh
Confidence 9999885 689999999999988776543 444444432 147899999888888887774321110 1 1
Q ss_pred hhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHH---HHhhCCCCCC-CCCccc-ccC
Q 000159 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDA---EYEKNPFEGT-VVPKKT-VRA 830 (2013)
Q Consensus 756 ~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~---ef~k~~~~~~-p~p~R~-~r~ 830 (2013)
+.++++.-. . +.++++++-- -.+|+..+...+|..+.+|-..+=..-...|++ ...++..... ..|-|. +-.
T Consensus 562 mPPLi~KW~-~-lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~ 638 (885)
T KOG2023|consen 562 MPPLIEKWE-L-LSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIV 638 (885)
T ss_pred ccHHHHHHH-h-cCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEE
Confidence 223443333 3 7888887643 356777777778877776654443333333332 2233322110 112111 000
Q ss_pred cccc-----CCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc
Q 000159 831 SEST-----SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (2013)
Q Consensus 831 ~~~~-----~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~ 905 (2013)
+-+. ++-++..+.++.+.+ |..-++.-+.|.--.+|..+.-.++.+...+..++.|+. .+++..|..-++
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~sn----l~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~-~~fl~~lg~Nl~ 713 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSN----LLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNL-ADFLPILGANLN 713 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhcc----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHhhcCC
Confidence 0000 000111222333322 334556677888999999999999999987767888885 888888888888
Q ss_pred chhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHH
Q 000159 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVT 977 (2013)
Q Consensus 906 DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k--~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~ 977 (2013)
-.+..+.-.|+-.+|+||..+|.+..+|+..++-.++..++-++ ..+-+-..-+++.+...++ ++.++..-.
T Consensus 714 ~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc 793 (885)
T KOG2023|consen 714 PENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWC 793 (885)
T ss_pred hhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHH
Confidence 88889999999999999999999999999999998888776443 3344444445555544443 222222222
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000159 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (2013)
Q Consensus 978 ~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L 1055 (2013)
..|.+-. .-..|..++..+...+.-.+.. .++.-++. .+....+...++|....+.|..+...+|...-..++..+
T Consensus 794 ~sl~~i~-DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~-aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf 871 (885)
T KOG2023|consen 794 TSLRNID-DNEEKESAFRGLCNMINVNPSGVVSSFIFICD-AIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQF 871 (885)
T ss_pred HHhcccc-cchhHHHHHHHHHHheeeCchhhhhhhHHHHH-HHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcC
Confidence 3333211 1234666666665554433221 11111222 444556777999999999999999999998888889999
Q ss_pred ChHHHHHHHHH
Q 000159 1056 QGPALALILER 1066 (2013)
Q Consensus 1056 ~~~~~~~i~~~ 1066 (2013)
+|..+..+...
T Consensus 872 ~P~~~erl~a~ 882 (885)
T KOG2023|consen 872 PPPLKERLQAF 882 (885)
T ss_pred ChhHHHHHHHH
Confidence 99887766653
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-13 Score=159.21 Aligned_cols=387 Identities=16% Similarity=0.175 Sum_probs=268.8
Q ss_pred hHHHHHHHHHhhhcCh---hhhHHHHHHHHHHHhhhChhHHHHHHHHHhhh---CCChhHHHHHHHHHHHHHHHhCCCC-
Q 000159 681 CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSH- 753 (2013)
Q Consensus 681 ~~~~il~~LveKlgD~---K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~---~KnpKv~~~~l~~L~~li~~fG~~~- 753 (2013)
|...-+..++.|-|-. .++......+.++..++.+.+... +++.+.+ .-.||-+...+++++...+++...+
T Consensus 60 w~~l~l~k~~~k~g~~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~ 138 (516)
T KOG2956|consen 60 WLKLALGKLFAKKGAEALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGT 138 (516)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCC
Confidence 3444445555554431 345555667777788888777766 7776633 3479999999999999998876432
Q ss_pred -CChhhHHHHHHhcCCCC---C--cHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCC-CCCc-
Q 000159 754 -LKLKDLIDFCKDTGLQS---S--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT-VVPK- 825 (2013)
Q Consensus 754 -l~~k~li~~l~~~gL~~---~--n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~-p~p~- 825 (2013)
.+.+..-.-..++ +.+ . ...+-....+.++.++-..-.+|...++.+.|......-+..+.+..+.. |.+.
T Consensus 139 s~~t~~~~~s~rkm-~~~~~d~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a 217 (516)
T KOG2956|consen 139 SPNTKETKAAIRKM-FPWMFDPRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSA 217 (516)
T ss_pred CCCCCcchhhhhhc-cccccCchhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchh
Confidence 3333322222222 222 1 12344555667777777777778888889999887777776665543221 1111
Q ss_pred -c--cc-cCcccc-----C--------CC---------CCC--------------CCCCCCCccc-ccccchHHHHhcCC
Q 000159 826 -K--TV-RASEST-----S--------SV---------SSG--------------GSDGLPREDI-SGKFTPTLVKSLES 864 (2013)
Q Consensus 826 -R--~~-r~~~~~-----~--------s~---------~~~--------------~~d~lpr~dI-s~~L~~~ll~~l~d 864 (2013)
+ +. +.+... + +. +.+ ..|.+++..+ ...+..+++.++++
T Consensus 218 ~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v~~~l~~~~g 297 (516)
T KOG2956|consen 218 EKERFDSSNNKPSLPLSPPEEEKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQSALVADLLKEISG 297 (516)
T ss_pred hhcccccccccccccCCChhhcccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcchhHHHHHHHHhccC
Confidence 1 00 000000 0 00 000 0111222211 12234467777776
Q ss_pred C-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHH
Q 000159 865 P-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (2013)
Q Consensus 865 ~-~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D-sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll 942 (2013)
. .-..|++|+.+|..++.+....+|...|++|+..+...|.| .+......|+++|+.++++-...|..+.+..+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 6 78899999999999998766778888899999999999999 788999999999999999999999999999999999
Q ss_pred HHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC---CChhhhHHHHH
Q 000159 943 KCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPAS 1018 (2013)
Q Consensus 943 ~~L~D~k~-~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl~ 1018 (2013)
++-+|+.. .+|.|+..|+..+..+.++..+ ..|...+.+.. -..-.-+++++.+.++.+... .-+.++++.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~I-~~i~~~Ilt~D--~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQCI-VNISPLILTAD--EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhHH-HHHhhHHhcCc--chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 99999776 5666666677777777775554 33455544332 122356778999999887653 23566777799
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCC
Q 000159 1019 IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (2013)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~ 1072 (2013)
++++..++.|||.|..||.+++..+|.+.|.+++..|..++++.|+-|++++..
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s 508 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASS 508 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998754
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-11 Score=145.08 Aligned_cols=672 Identities=18% Similarity=0.202 Sum_probs=380.3
Q ss_pred HHHHHHHHHHHHHHHHHhchhh----h-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh------hhhHHHHHH
Q 000159 66 APVQDKALDALIAYLKAADADA----G-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA------VDVFLDVME 134 (2013)
Q Consensus 66 ~~vqe~~leal~~~v~~~~~~~----~-~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~------~~~v~~~L~ 134 (2013)
...+|.|+.||....+-...-+ . +...-++|.+++-.-...|++|..|+.|+-.|+=+.. .+..++.|.
T Consensus 142 ~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lF 221 (885)
T KOG2023|consen 142 YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILF 221 (885)
T ss_pred ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHH
Confidence 3788999988887766543311 1 2234455555554333689999999999998885421 245555555
Q ss_pred HHhhcCChhhHHHHHHHHHHHHHHhCCCCcC-hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHh-hCCchhhHHHhhhC
Q 000159 135 KAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVKTILFEKM 212 (2013)
Q Consensus 135 ~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~-lG~~~l~~~l~~~L 212 (2013)
..-+.-+|.|+......+.-+++----+.+| +..|+.++...-.+.|.+|-=||..+...+... +-++.+.+++ ++|
T Consensus 222 alanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l-~kl 300 (885)
T KOG2023|consen 222 ALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYL-DKL 300 (885)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHH-HHH
Confidence 5556788988888888887777644445554 678999999999999999999998886555422 2223444554 555
Q ss_pred hHHHHHHH-----HH-HHHhcC-CCCCC-------CccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000159 213 RDTMKKEL-----EV-ELVNVS-GTARP-------TRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP 278 (2013)
Q Consensus 213 k~~q~keL-----e~-~f~k~~-~~~~P-------~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~ 278 (2013)
-|+.+.-. +- ..++.. ....| +||-++... |.+... ++++++.|.
T Consensus 301 iPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~------------~~~~~~---~~eDdddDe------ 359 (885)
T KOG2023|consen 301 IPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH------------GNGEDA---DDEDDDDDE------ 359 (885)
T ss_pred HHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc------------cCcccc---ccccccccc------
Confidence 56544321 00 111111 11222 133322211 111100 111111111
Q ss_pred ccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh
Q 000159 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR 357 (2013)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~-~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~ 357 (2013)
+-+.....+|.-|+-....|.-+++ +.. .-+.-+++.|++.+..-+=.|...++-++|.+|+|--
T Consensus 360 -----------~DDdD~~~dWNLRkCSAAaLDVLan---vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM 425 (885)
T KOG2023|consen 360 -----------DDDDDAFSDWNLRKCSAAALDVLAN---VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM 425 (885)
T ss_pred -----------cccccccccccHhhccHHHHHHHHH---hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh
Confidence 1122345789999976665554443 111 2245678888888887777889999999999999999
Q ss_pred hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000159 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2013)
Q Consensus 358 ~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2013)
..|-||...++|.++..+.|||+-||.-. |+++.+.-..+. +..+
T Consensus 426 ~g~~p~LpeLip~l~~~L~DKkplVRsIT-----------CWTLsRys~wv~----------------------~~~~-- 470 (885)
T KOG2023|consen 426 QGFVPHLPELIPFLLSLLDDKKPLVRSIT-----------CWTLSRYSKWVV----------------------QDSR-- 470 (885)
T ss_pred hhcccchHHHHHHHHHHhccCccceeeee-----------eeeHhhhhhhHh----------------------cCCh--
Confidence 99999999999999999999999988532 666655433331 1111
Q ss_pred HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000159 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517 (2013)
Q Consensus 438 ~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~ 517 (2013)
.++++.++..+.+.+-|++..|.+||+.+|+++-.-.|++ +-||++.+-.........|-.+
T Consensus 471 --~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~K--------------- 532 (885)
T KOG2023|consen 471 --DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKK--------------- 532 (885)
T ss_pred --HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhc---------------
Confidence 1234667777888899999999999999999999999986 6678876554433333332111
Q ss_pred CCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHH
Q 000159 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR 597 (2013)
Q Consensus 518 ~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~ 597 (2013)
T Consensus 533 -------------------------------------------------------------------------------- 532 (885)
T KOG2023|consen 533 -------------------------------------------------------------------------------- 532 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHHHHHHcC-
Q 000159 598 LGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATAT- 675 (2013)
Q Consensus 598 ~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~-pgl~DsN~qV~~~~Le~l~~l~~~~~- 675 (2013)
|-..=.+|+..|.+.+...=+...+.++++.-|..+ -.++|+..-+ --.||++..++..++
T Consensus 533 ----------------NLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~ 595 (885)
T KOG2023|consen 533 ----------------NLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGV 595 (885)
T ss_pred ----------------ceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhc
Confidence 000011122222222211000011233332222111 1234433222 234566666666543
Q ss_pred CCc---hhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC
Q 000159 676 KFP---KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (2013)
Q Consensus 676 ~~~---~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~ 752 (2013)
.|. ...+..|+ .|+. +++..++....+.. .....-....-+|..++-+++..|..
T Consensus 596 gF~P~~~~Vy~Rc~-~il~------------~t~q~~~~~~~~~~---------~~~pdkdfiI~sLDL~SGLaegLg~~ 653 (885)
T KOG2023|consen 596 GFLPYAQPVYQRCF-RILQ------------KTLQLLAKVQQDPT---------VEAPDKDFIIVSLDLLSGLAEGLGSH 653 (885)
T ss_pred cccccCHHHHHHHH-HHHH------------HHHHHHHhccCCcc---------ccCCCcceEEEeHHHHhHHHHHhhhc
Confidence 232 22222221 1111 12222222211100 01111112334566666677766653
Q ss_pred C---CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCccccc
Q 000159 753 H---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (2013)
Q Consensus 753 ~---l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r 829 (2013)
. +.-..+.+.+..+ +.|.-|+||++|..++|.|-++.-+.+.++++++-|.+-..
T Consensus 654 ie~Lva~snl~~lll~C-~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~N--------------------- 711 (885)
T KOG2023|consen 654 IEPLVAQSNLLDLLLQC-LQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGAN--------------------- 711 (885)
T ss_pred hHHHhhhccHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhc---------------------
Confidence 2 1123477777776 99999999999999999998776555666655544433211
Q ss_pred CccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--cch
Q 000159 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDS 907 (2013)
Q Consensus 830 ~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL--~Ds 907 (2013)
+.++.+. +-..|.-++++|..+.....++. .+.++.-|...+ ...
T Consensus 712 ------------------------l~~~~is--------v~nNA~WAiGeia~k~g~~~~~~-v~~vl~~L~~iin~~~~ 758 (885)
T KOG2023|consen 712 ------------------------LNPENIS--------VCNNAIWAIGEIALKMGLKMKQY-VSPVLEDLITIINRQNT 758 (885)
T ss_pred ------------------------CChhhch--------HHHHHHHHHHHHHHHhchhhhhH-HHHHHHHHHHHhcccCc
Confidence 1111111 12234446666665433333333 244555555554 445
Q ss_pred hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcC-
Q 000159 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDA- 983 (2013)
Q Consensus 908 N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~- 983 (2013)
++.+...+..+||.++...+..+.+|...++.+....+..=+ ..-.++|...+-.++...+ .-.-+..+..++.+=
T Consensus 759 ~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~ 838 (885)
T KOG2023|consen 759 PKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWS 838 (885)
T ss_pred hHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhccc
Confidence 677888888999999988888899999999988776554321 1245666666666655432 222233344444321
Q ss_pred CCChhhHHHHHHHHHHH
Q 000159 984 KLGAEGRKDLFDWLSKQ 1000 (2013)
Q Consensus 984 k~~p~~R~~~l~~L~~~ 1000 (2013)
+.....|.+..+.|..+
T Consensus 839 np~~~l~~~f~kiL~g~ 855 (885)
T KOG2023|consen 839 NPEDDLRDEFYKILQGF 855 (885)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 01134566655555443
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-11 Score=150.66 Aligned_cols=350 Identities=18% Similarity=0.179 Sum_probs=251.8
Q ss_pred CchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHH---
Q 000159 46 KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWV--- 121 (2013)
Q Consensus 46 ~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~-~k~~~k~~A~~~ll~~~--- 121 (2013)
.||..-.+...+-.-+.-.-..+|.....|+-.++-......+ .-+..++.++++ .+..-+..+..-+--++
T Consensus 90 ~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~ 165 (569)
T KOG1242|consen 90 VDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL 165 (569)
T ss_pred cCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc
Confidence 4443333333333445555778888888888777655433222 223334445566 35455554433333333
Q ss_pred --hhhhhhhHHHHHHHHhhcCChhhHH-HHHHHHHHHHHHhCCCCcC-hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHH
Q 000159 122 --ELEAVDVFLDVMEKAIKNKVAKAVV-PAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCR 197 (2013)
Q Consensus 122 --E~~~~~~v~~~L~~~~~~KnpKv~~-~~l~~L~~~l~~fG~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~ 197 (2013)
|......+++.|.++..+|++.... +++.+.......-|...-| +-++++.+...|++..+.||.+|...+..+.+
T Consensus 166 ~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 166 GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 2234567888998888888775555 5666666666666754333 45788888889999999999998887766666
Q ss_pred hhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 198 WIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVD 277 (2013)
Q Consensus 198 ~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~ 277 (2013)
.+.+-.++..+
T Consensus 246 ~~~~~aVK~ll--------------------------------------------------------------------- 256 (569)
T KOG1242|consen 246 CLSAYAVKLLL--------------------------------------------------------------------- 256 (569)
T ss_pred hcCcchhhHhh---------------------------------------------------------------------
Confidence 65432221111
Q ss_pred cccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh
Q 000159 278 PVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL 356 (2013)
Q Consensus 278 ~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L 356 (2013)
| .....+.+.+|+.+..+++.|..++. .|+.......++++.|.+++.|+.+.|+..+..|+..++...
T Consensus 257 --------p--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 257 --------P--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred --------h--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 1 12222333499999999999998884 666666667899999999999999999999999999999888
Q ss_pred hhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000159 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (2013)
Q Consensus 357 ~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~--~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~ 434 (2013)
.+ +-+..++|.|++.+.|.+..+.++......+=|-+ ...+++-++|.+..++..++..+|..++..+..+..-+
T Consensus 327 dN---~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 327 DN---PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred cc---HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 76 45889999999999999977765554444332222 23567788999999999999999999999998877777
Q ss_pred -ChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhH
Q 000159 435 -SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (2013)
Q Consensus 435 -~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~ 481 (2013)
++..+.++++.++|.+.+.+.|+.|+||..+.++|+.+.+..|++.+
T Consensus 404 eDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 404 EDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred cCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 56678899999999999999999999999999999999999998754
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9e-10 Score=135.61 Aligned_cols=584 Identities=18% Similarity=0.180 Sum_probs=336.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC
Q 000159 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (2013)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~K 415 (2013)
|.....+...-.+|..|++..|=. ..+..|=--+..+.+-||+-...|...++.+ .+++.+++.|...+++|
T Consensus 452 ded~yar~egreIisnLakaaGla------~mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLA------TMISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhH------HHHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 444555666666777676643311 1222222233456667888888888888876 78899999998888865
Q ss_pred -ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc---hhHHHHHhhccHH
Q 000159 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDDV 491 (2013)
Q Consensus 416 -np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge---~~~~~~l~~Ld~~ 491 (2013)
+|+.|..+......+..-.+-+ ..++++.++.++-++|.|....||..+.-++.++.+..+. +.|+..+.-|-..
T Consensus 524 kSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 8999998887776654433433 3467899999999999999999999999999999988663 3344333333211
Q ss_pred HHH----HHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 492 RRN----KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKD 567 (2013)
Q Consensus 492 ~~k----ki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~ 567 (2013)
.+. -+...++..|-.-+..-+.- + +.-..+. .--..+.+ .+ |-- ..|.-.-|
T Consensus 603 ir~hrgk~laafLkAigyliplmd~ey-a-----~yyTrev-mlil~rEf-~s------PDe----emkkivLK------ 658 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMDAEY-A-----SYYTREV-MLILIREF-GS------PDE----EMKKIVLK------ 658 (1172)
T ss_pred HHHccChHHHHHHHHHhhccccccHHH-H-----HHhHHHH-HHHHHHhh-CC------ChH----HHHHHHHH------
Confidence 111 11111111111000000000 0 0000000 00000000 00 000 00000000
Q ss_pred CCCCCcCCcCCCCCCCCCCCCCCHHHHHHH---hhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHH----hccCcchHHH
Q 000159 568 GSGKQETSKLTEAPEDVEPSEMSLEEIESR---LGSLIPADTVGQLKSAVWKERLEAISSLRQQVE----AVQNLDQSVE 640 (2013)
Q Consensus 568 ~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~---~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~----~~~~~~~~~~ 640 (2013)
-.++|++. -..++-.+++-.++.+-|..|.++-......+- .......+.+
T Consensus 659 ----------------------Vv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~ 716 (1172)
T KOG0213|consen 659 ----------------------VVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP 716 (1172)
T ss_pred ----------------------HHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchH
Confidence 00000000 012344567777888889988887332222221 1100001223
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHHHHhhhcChhhhHH-HHHHHHHHHhhhCh--
Q 000159 641 ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRAH-AMKCLTTFSEAVGP-- 715 (2013)
Q Consensus 641 ~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~--~~~~~~~~~il~~LveKlgD~K~r~~-a~e~L~~l~e~~~~-- 715 (2013)
.+-|.+. .++|.+.|-.....+++..++.+.+ +|..+....++.+++-.+....+-+. ....+..++..++.
T Consensus 717 ~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~ 793 (1172)
T KOG0213|consen 717 IVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRV 793 (1172)
T ss_pred HHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhcc
Confidence 4444443 3688888888888898888888765 45566666677777666554322222 22344444444432
Q ss_pred ----hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhC
Q 000159 716 ----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG 791 (2013)
Q Consensus 716 ----~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G 791 (2013)
..++..++..+ .+|+|+||+.++..++.+..-.... .-..++..+ =+.||.++|
T Consensus 794 kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc--~ee~~m~~l-------------------GvvLyEylg 851 (1172)
T KOG0213|consen 794 KPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTC--GEEKLMGHL-------------------GVVLYEYLG 851 (1172)
T ss_pred ccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhc--cHHHHHHHh-------------------hHHHHHhcC
Confidence 23444444554 7999999999998887765422110 000111111 123444444
Q ss_pred hhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCC-cccccccchHHHHhcCCCChHHH
Q 000159 792 PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR-EDISGKFTPTLVKSLESPDWKVR 870 (2013)
Q Consensus 792 ~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr-~dIs~~L~~~ll~~l~d~~Wk~R 870 (2013)
..--.-| +.++..|.....-+.-. ...|+ .||.+.|+| -+.++.-|+-
T Consensus 852 eeypEvL----gsILgAikaI~nvigm~-----------------------km~pPi~dllPrltP----ILknrheKVq 900 (1172)
T KOG0213|consen 852 EEYPEVL----GSILGAIKAIVNVIGMT-----------------------KMTPPIKDLLPRLTP----ILKNRHEKVQ 900 (1172)
T ss_pred cccHHHH----HHHHHHHHHHHHhcccc-----------------------ccCCChhhhcccchH----hhhhhHHHHH
Confidence 3322111 12222222222211100 01111 233333554 3456667888
Q ss_pred HHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcH
Q 000159 871 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950 (2013)
Q Consensus 871 ~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~ 950 (2013)
..+++.+..|+..+..++....+--|.--|...|+--|+.++..|.+.+|.|+++.|+. .++-.+++.|+-+.-
T Consensus 901 en~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------dVLatLlnnLkvqeR 974 (1172)
T KOG0213|consen 901 ENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------DVLATLLNNLKVQER 974 (1172)
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------HHHHHHHhcchHHHH
Confidence 89999999998755444443333334455666677789999999999999999999976 678899999999888
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC-CCChhhhHHH-HHhhcCCCChHH
Q 000159 951 HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKP-ASIAMTDKSSDV 1028 (2013)
Q Consensus 951 ~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~~~~~~ll~p-l~~~L~D~~~dV 1028 (2013)
..|....-++.-+++.||+=.++|.+..-...+ +..+..++|.-|.-.|+-++. +.+..-.+.| |-.+|.|++.--
T Consensus 975 q~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP--e~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vh 1052 (1172)
T KOG0213|consen 975 QNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP--EANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVH 1052 (1172)
T ss_pred HhchhhhhhhhhhhhhcCchhhhHHHHhhccCc--hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHH
Confidence 888888889999999999999999888777766 356677777777666655443 3344555555 667999999999
Q ss_pred HHHHHHHHHH
Q 000159 1029 RKAAEACIVE 1038 (2013)
Q Consensus 1029 R~aA~~~L~~ 1038 (2013)
|..|..++..
T Consensus 1053 Rqta~~~I~H 1062 (1172)
T KOG0213|consen 1053 RQTAMNVIKH 1062 (1172)
T ss_pred HHHHHHHHHH
Confidence 9988766543
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.8e-08 Score=135.89 Aligned_cols=773 Identities=14% Similarity=0.125 Sum_probs=456.7
Q ss_pred hhhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhhhhH---HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh-
Q 000159 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYA---KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV- 126 (2013)
Q Consensus 52 ~~~~~~~k~v~D-sN~~vqe~~leal~~~v~~~~~~~~~~~---~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~- 126 (2013)
....++.++-.- ++...++.++..|..|.+....+ .+.. ...+|.|+.-.-++.+.+|..|..++..+...+..
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk 92 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLR 92 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 344566666544 46899999999999999886442 2222 34788888763346788999888887777655331
Q ss_pred -----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHh-----CCCCcChhHHHHhhhhhhcCCC---hHHHHHHHHHHH
Q 000159 127 -----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEF-----GAKIIPPKRILKMLPELFDHQD---QNVRASSKGLTL 193 (2013)
Q Consensus 127 -----~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~f-----G~~~i~~k~il~~l~~ll~~~d---~~VR~~a~~l~~ 193 (2013)
...+..|...+.+-++..+..|..+|..+-... +.+++--.-.+|.|..++.+.+ +.|++.+...+.
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~ 172 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR 172 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 244556666777778888888888887765321 2122212345777777777763 233333333322
Q ss_pred HHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCC
Q 000159 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEY 273 (2013)
Q Consensus 194 ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~ 273 (2013)
.|..+-+. ....+. + .|.
T Consensus 173 nLs~~~en--~~~~II------------------------------------------e-aGa----------------- 190 (2102)
T PLN03200 173 NLCGSTDG--FWSATL------------------------------------------E-AGG----------------- 190 (2102)
T ss_pred HHhcCccc--hHHHHH------------------------------------------H-cCC-----------------
Confidence 22221110 000000 0 000
Q ss_pred CCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCC--CChHHHHHHHHHHhc-ccCHHHHHHHHHHH
Q 000159 274 ELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAI 349 (2013)
Q Consensus 274 dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~--~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l 349 (2013)
+ +.+.+.+.+.+=..+.+|...|..++. .+.... -+ ...++.|.+.+. +.+..+...|+-+|
T Consensus 191 -----------V--p~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 191 -----------V--DILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred -----------H--HHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 0 134444555555666777776666553 221100 01 123567777786 56778999999999
Q ss_pred HHHHHHhhhcchhh--hHhHHHHHHHHhcc---------CcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC-Ch
Q 000159 350 GNLARGLRTHFSGS--SRFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VP 417 (2013)
Q Consensus 350 ~~La~~L~~~f~~~--~~~llp~LL~klkd---------kk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~K-np 417 (2013)
..|+.+- .++... -...+|.|++.+.. .+..+++.+.-||..++.. ...+++.+...+.+. ..
T Consensus 257 ~nLAs~s-~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg----~~~ll~~L~~ll~s~rd~ 331 (2102)
T PLN03200 257 EALSSQS-KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG----MSALILYLGELSESPRSP 331 (2102)
T ss_pred HHHhcCC-HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC----chhhHHHHHHhhcccchH
Confidence 9999741 222222 12457777777753 2355678888888887653 356777776666542 34
Q ss_pred HHHHHHHHHHHHHHHhcChh-HHHHhh--hhHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHhCchhHHHHHhhccHHHH
Q 000159 418 LVRSLTLNWVTFCIETSSKA-AVLKVH--KDYVPICMECLNDGTPE-VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (2013)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~-~l~~~l--~~l~p~l~k~l~Ds~~~-VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~ 493 (2013)
.+-..++..|..++...... .....+ ..+++.|++++.+.++. |.+.+.++|. ..+|+..+...+..-|. .
T Consensus 332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa---sl~gN~~l~~~L~~~da-i- 406 (2102)
T PLN03200 332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA---SLYGNAYLSRKLNHAEA-K- 406 (2102)
T ss_pred HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH---HhcCChHHHHHHHhccc-h-
Confidence 44445555555554433211 111111 24678999999988877 4777777764 33566544444433210 0
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000159 494 NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQE 573 (2013)
Q Consensus 494 kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~ 573 (2013)
+-+-..+...+ ..+.......+
T Consensus 407 k~LV~LL~~~~---------------------------~evQ~~Av~aL------------------------------- 428 (2102)
T PLN03200 407 KVLVGLITMAT---------------------------ADVQEELIRAL------------------------------- 428 (2102)
T ss_pred hhhhhhhccCC---------------------------HHHHHHHHHHH-------------------------------
Confidence 11111111000 00000000000
Q ss_pred CCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc------hHHHHHHHHHh
Q 000159 574 TSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVC 647 (2013)
Q Consensus 574 ~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~------~~~~~lv~~L~ 647 (2013)
+... ..+.+........-.-+.++..|.+.+-..|..|+..|..+..+.++.. ...+.|+++|.
T Consensus 429 -~~L~---------~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~ 498 (2102)
T PLN03200 429 -SSLC---------CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE 498 (2102)
T ss_pred -HHHh---------CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 0000 0012223333333345788999999999999999998887765422110 12456666653
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhc--ChhhhHHHHHHHHHHHhhhChhHHHHHHH
Q 000159 648 MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERLY 723 (2013)
Q Consensus 648 ~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlg--D~K~r~~a~e~L~~l~e~~~~~~Vl~~L~ 723 (2013)
..+..+++.+.-++..+... ..-.+..+ ..+++.|++-+. +.+.+..|..+|..+...... .++..++
T Consensus 499 ------s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-~~I~~Lv 570 (2102)
T PLN03200 499 ------TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-ATISQLT 570 (2102)
T ss_pred ------CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-hHHHHHH
Confidence 34567888888888776642 11112233 236777777664 467888899999988765444 3556677
Q ss_pred HHhhhCCChhHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh
Q 000159 724 KIMKDHKNPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2013)
Q Consensus 724 ~~l~~~KnpKv~~~~l~~L~~li~~fG~~~-----l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2013)
.. ..+.+++++..++..|..++..-.... .....-++.+..+ +.+.++.+++.|..++..++....+ .
T Consensus 571 ~L-Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~~d-~---- 643 (2102)
T PLN03200 571 AL-LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSRQD-L---- 643 (2102)
T ss_pred HH-hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCChH-H----
Confidence 65 478889999999998888765221110 0012356677777 8999999999999998877642211 0
Q ss_pred hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHH
Q 000159 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878 (2013)
Q Consensus 799 ~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~ 878 (2013)
...+-. ....+-++..+.+.+-++|+++...|.
T Consensus 644 -------~~avv~----------------------------------------agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 644 -------CESLAT----------------------------------------DEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred -------HHHHHH----------------------------------------cCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 000000 002234777888888999999999999
Q ss_pred HHHHhcccc-CCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHH
Q 000159 879 KILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957 (2013)
Q Consensus 879 ~il~~a~~~-I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~ 957 (2013)
.+....+.. ...-.-...++.|...|++.+..++..|+.++..|+..-...-+-.....++.+++.|.+....+|+.|.
T Consensus 677 nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa 756 (2102)
T PLN03200 677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAA 756 (2102)
T ss_pred HHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHH
Confidence 988522110 0000013467889999999999999999999999986543222112245689999999999999999999
Q ss_pred HHHHHHHHhcCchhhH----------HHHHHHHhcCCC-Chhh--HHHHHHHHHHHhccCCC-CC------ChhhhHHHH
Q 000159 958 TVLDAWLAAVHLDKMV----------PYVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPA 1017 (2013)
Q Consensus 958 ~aL~~i~~~~gl~~ll----------~~l~~~L~~~k~-~p~~--R~~~l~~L~~~l~~~~~-~~------~~~~ll~pl 1017 (2013)
.+|..++++.+.+.++ ..+...|...+. +... -.+++.|+++.=..... .+ +...-+.|+
T Consensus 757 ~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l 836 (2102)
T PLN03200 757 RALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPL 836 (2102)
T ss_pred HHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHH
Confidence 9999999888766533 235566663321 1111 34556666552111111 11 223557889
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHH
Q 000159 1018 SIAMTDKSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 1018 ~~~L~D~~~dVR~aA~~~L~~l~~ 1041 (2013)
+.||.+.+++|-..|.+.|..+..
T Consensus 837 ~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 837 VRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHHcCChHHHHHHHHHHHHHhc
Confidence 999999999999999999887753
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-07 Score=129.15 Aligned_cols=807 Identities=16% Similarity=0.146 Sum_probs=465.0
Q ss_pred hhhhhhhccC--CHHHHHHHHHHHHHHhcCC---CCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhcc
Q 000159 288 SGFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHF 360 (2013)
Q Consensus 288 ~~f~~~l~s~--kWkeR~eaL~~L~~l~~~p---ki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f 360 (2013)
..+.+++.+. +-++|+.++.+|+.+++.. +..-.+....++.|...|...+..+...|+.++..|+.. ++...
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~I 95 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKV 95 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3677888765 7799999999999998532 111011233566777777655677788888888888753 22211
Q ss_pred hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCC-------hHhHHHHHHHHhhcCCh---HHHHHHHHHHHH
Q 000159 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLN-------LVDVVEDVKTSVKNKVP---LVRSLTLNWVTF 429 (2013)
Q Consensus 361 ~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~-~~~-------l~~il~~l~~~l~~Knp---~vR~~~l~~L~~ 429 (2013)
- ....+|+|++.+++.+...++.+..+|..+..++ +.. -..++|.|+..+++.+. -++..++..|..
T Consensus 96 v--~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~n 173 (2102)
T PLN03200 96 L--LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRN 173 (2102)
T ss_pred H--HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 1 2678999999999999999999999999987641 010 13457888888886542 244444555555
Q ss_pred HHHhcChhHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCC
Q 000159 430 CIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVA 508 (2013)
Q Consensus 430 ~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~ 508 (2013)
+..... ......+ .-.+|.++.+|.+.++.++..|..++..++...++ .. ..|.+ .+ +
T Consensus 174 Ls~~~e-n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~~------------~aVIe---aG-a--- 232 (2102)
T PLN03200 174 LCGSTD-GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-SI------------SKVLD---AG-A--- 232 (2102)
T ss_pred HhcCcc-chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-HH------------HHHHH---CC-C---
Confidence 443222 1111111 23789999999999999999888777655433322 01 11111 00 0
Q ss_pred CCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCC
Q 000159 509 TGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSE 588 (2013)
Q Consensus 509 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~ 588 (2013)
T Consensus 233 -------------------------------------------------------------------------------- 232 (2102)
T PLN03200 233 -------------------------------------------------------------------------------- 232 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHhhccCcHHHHhhhcC-CCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHH
Q 000159 589 MSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667 (2013)
Q Consensus 589 ~S~ee~e~~~~~~l~~~l~~~L~s-~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l 667 (2013)
-+.+++.|.+ .+-..|.+|+-.|.++..... ...+.+++ ..++..|
T Consensus 233 --------------VP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~---e~r~~Iv~----------------aGgIp~L 279 (2102)
T PLN03200 233 --------------VKQLLKLLGQGNEVSVRAEAAGALEALSSQSK---EAKQAIAD----------------AGGIPAL 279 (2102)
T ss_pred --------------HHHHHHHHccCCChHHHHHHHHHHHHHhcCCH---HHHHHHHH----------------CCCHHHH
Confidence 0233444433 334556666666655543211 11111111 0111111
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHH
Q 000159 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (2013)
Q Consensus 668 ~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~ 747 (2013)
..++.. +. +.++ ..-...-+++.|.-+|..+|.-. ..++..|...+.......+...++..|..++.
T Consensus 280 I~lL~s-p~--~e~~--------~~~~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 280 INATVA-PS--KEFM--------QGEFAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHhC-cc--hhhh--------ccccchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 111110 00 0000 00001123455555666655432 23444454443233455566677778877776
Q ss_pred HhCCCC-----CChhhHHHHHHhcCCCCCcHh-HHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCC
Q 000159 748 DFGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT 821 (2013)
Q Consensus 748 ~fG~~~-----l~~k~li~~l~~~gL~~~n~~-VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~ 821 (2013)
.+.... ++...+...+.++ +.+.++. |.+.+..++..+| |.. .+.+.|.+. +
T Consensus 347 l~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~---gN~----------~l~~~L~~~-------d- 404 (2102)
T PLN03200 347 VFDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLY---GNA----------YLSRKLNHA-------E- 404 (2102)
T ss_pred hcCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhc---CCh----------HHHHHHHhc-------c-
Confidence 554321 2223344556667 7877766 4777777766655 222 111111110 0
Q ss_pred CCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHH
Q 000159 822 VVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (2013)
Q Consensus 822 p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~ 901 (2013)
..+-++..+...+-..+.+++..|..++...+..++.-.-...++.|.
T Consensus 405 --------------------------------aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV 452 (2102)
T PLN03200 405 --------------------------------AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLI 452 (2102)
T ss_pred --------------------------------chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHH
Confidence 012345555556667788888888877742111111100123578888
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHhChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhH
Q 000159 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMV 973 (2013)
Q Consensus 902 ~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll 973 (2013)
..|...+..++..|+.+++.|+..-...-... -...+|.+++.|...+..++..|..+|..+..+-. -...+
T Consensus 453 ~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAI 532 (2102)
T PLN03200 453 SLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAV 532 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCH
Confidence 88888889999999999999875322111111 13579999999999999999999999998774321 12456
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000159 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (2013)
Q Consensus 974 ~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~ 1053 (2013)
|.+...|.+. ++..|..++..|...+... ..+.+++++..|...++.+...+..+++.+......+.+....
T Consensus 533 ppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~-----d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g- 604 (2102)
T PLN03200 533 PALLWLLKNG--GPKGQEIAAKTLTKLVRTA-----DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG- 604 (2102)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh-
Confidence 7788888866 4678877777777654321 1345577777787788888888888887776655443322110
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhhcc
Q 000159 1054 DIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLN 1133 (2013)
Q Consensus 1054 ~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (2013)
.........+.+.++..
T Consensus 605 ~~~~ggL~~Lv~LL~sg--------------------------------------------------------------- 621 (2102)
T PLN03200 605 SAANDALRTLIQLLSSS--------------------------------------------------------------- 621 (2102)
T ss_pred hhccccHHHHHHHHcCC---------------------------------------------------------------
Confidence 00111222222222110
Q ss_pred cCCCChHHHh-hhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcccChhh----HHH-
Q 000159 1134 VKDSNKEDRE-RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD----IIE- 1207 (2013)
Q Consensus 1134 ~~~~~k~~R~-~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~----~i~- 1207 (2013)
.+..+. .-..+ +++-..+.++.+.+ ...-.=+-++.+|.+.++..+.++.-.|...+.+.... ++.
T Consensus 622 ----s~~ikk~Aa~iL-snL~a~~~d~~~av---v~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~ 693 (2102)
T PLN03200 622 ----KEETQEKAASVL-ADIFSSRQDLCESL---ATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAE 693 (2102)
T ss_pred ----CHHHHHHHHHHH-HHHhcCChHHHHHH---HHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 000000 00000 11122333433322 11112234788888999988888877777766543322 222
Q ss_pred -HHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhc
Q 000159 1208 -VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNF 1286 (2013)
Q Consensus 1208 -~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~v 1286 (2013)
.+..++++ +.+.+..+...+++.|..++..-... .+.=..-.||.|+.-+.+..+.+|+..-..+-++|.-
T Consensus 694 GaV~pL~~L----L~~~d~~v~e~Al~ALanLl~~~e~~----~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 694 DAIKPLIKL----AKSSSIEVAEQAVCALANLLSDPEVA----AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred CCHHHHHHH----HhCCChHHHHHHHHHHHHHHcCchHH----HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 24444444 57889999999999988765432111 1111234589998888777788899999999999999
Q ss_pred cCccccH----------HHHHhhhcCCChhhH--HHHHHHHHHHHHh-hCCCcccc--------cchHHHHHHhhcCCCh
Q 000159 1287 YSATKTL----------PYILEGLRSKNNRTR--IECVDLVGFLIDH-HGAEISGQ--------LKSLQIVASLTAERDG 1345 (2013)
Q Consensus 1287 ~p~skvf----------~~l~~gl~sKN~r~R--~ecl~~l~~li~~-~g~~~~~~--------~k~l~~ia~~i~drd~ 1345 (2013)
+|...+| .-|++-|++-|.+.- .|.|+.|+.+... +|..-..| +-.|..+..++.+-++
T Consensus 766 ~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p 845 (2102)
T PLN03200 766 FPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHP 845 (2102)
T ss_pred CChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCCh
Confidence 9977644 334555677776554 4699999998873 34332111 2346778888999999
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHhhc---CCHHHHHhHHHHHHhh
Q 000159 1346 EIRKAALNTLATGYKILGEDIWRYVGK---LTDAQKSMLDDRFKWK 1388 (2013)
Q Consensus 1346 ~VR~AAl~~l~~~y~~~G~~v~~~vg~---Ls~~~~s~l~er~kr~ 1388 (2013)
.|-..|+..|. .+|+|+-. .+|+ =.++-.+.|-.|+=++
T Consensus 846 ~~~~kai~il~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 846 LVQDKAIEILS---RLCRDQPV-VLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred HHHHHHHHHHH---HHhccChh-HHHHHHhcccchHHHHHHHHhhc
Confidence 99999999998 45666521 2333 2455567777777654
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-09 Score=144.21 Aligned_cols=565 Identities=18% Similarity=0.193 Sum_probs=347.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhH
Q 000159 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (2013)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~ 481 (2013)
.+...+...+.+-||..|++.+-||-.+++.+++ ....-.+++|..++..+|.|.|.-+.|.|.+.|+.++..-+...-
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence 3445556677899999999999999999988763 223345688999999999999999999999999998887665321
Q ss_pred HHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCC
Q 000159 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561 (2013)
Q Consensus 482 ~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k 561 (2013)
..+.+. ..+.+ .+|.. . ...+. .+ ..-++.+.+ |+.|
T Consensus 898 ~~LV~s----L~~tl---~~Gkr-----~--~~~vs--------~e------TelFq~G~L-g~Tp-------------- 934 (1702)
T KOG0915|consen 898 KSLVDS----LVNTL---TGGKR-----K--AIKVS--------EE------TELFQEGTL-GKTP-------------- 934 (1702)
T ss_pred HHHHHH----HHHHH---hcccc-----c--cceec--------cc------hhcccCCcC-CCCC--------------
Confidence 222211 11111 11110 0 00000 00 000100111 1111
Q ss_pred CCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhc-----CCCHHHHHHHHHHHHHHHHh-ccCc
Q 000159 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK-----SAVWKERLEAISSLRQQVEA-VQNL 635 (2013)
Q Consensus 562 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~-----s~~Wk~Rl~ale~L~~~v~~-~~~~ 635 (2013)
.|+ .--+.-|+...++++-.|+++-++- +.-|.-|+.|.-.|..+.+. ....
T Consensus 935 -----~Gg-----------------~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl 992 (1702)
T KOG0915|consen 935 -----DGG-----------------KISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKL 992 (1702)
T ss_pred -----CCC-----------------cchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhh
Confidence 110 0116789999999999999987552 36799999999999998876 3444
Q ss_pred chHHHHHH-HHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhh
Q 000159 636 DQSVEILV-RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEA 712 (2013)
Q Consensus 636 ~~~~~~lv-~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~ 712 (2013)
.++..-|+ |.... --|.+..|+..+-++|..++...+.....++..++..|+..+++. ++|+.+.-+|..+..-
T Consensus 993 ~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 993 EPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred hhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 44443333 22221 258999999999999999997655666778899999999999996 7899998888887765
Q ss_pred hChhHH-------HHHHHHHhhhCC-Chh-HHHHHHHHHHHHHHHhCCC--CCC----hhhHHHHHHhcCCCCCcHhHHH
Q 000159 713 VGPGFI-------FERLYKIMKDHK-NPK-VLSEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAAATRN 777 (2013)
Q Consensus 713 ~~~~~V-------l~~L~~~l~~~K-npK-v~~~~l~~L~~li~~fG~~--~l~----~k~li~~l~~~gL~~~n~~VR~ 777 (2013)
-+.+.+ +..+++.+-+.| +.| +-..++..|+.++-..+-. +.. +..+++++..-|.-++-++||.
T Consensus 1070 ~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~ 1149 (1702)
T KOG0915|consen 1070 RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRR 1149 (1702)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHH
Confidence 444433 444444432222 222 2234566677766554422 111 2346777755466788999999
Q ss_pred HHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHh-hCCCCCC------CCCcccccCccccCCC-CCCCCCCCCCcc
Q 000159 778 ATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE-KNPFEGT------VVPKKTVRASESTSSV-SSGGSDGLPRED 849 (2013)
Q Consensus 778 aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~-k~~~~~~------p~p~R~~r~~~~~~s~-~~~~~d~lpr~d 849 (2013)
.++.++..|-++.|..+++|+.++.|.++..+..-=. .+.+-.. .......|.+.++++. -...++.++-.|
T Consensus 1150 ~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD 1229 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID 1229 (1702)
T ss_pred HHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh
Confidence 9999999999999999999999999988776532100 0000000 0000011221111100 000123344444
Q ss_pred c--ccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHh
Q 000159 850 I--SGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM 926 (2013)
Q Consensus 850 I--s~~L~~~ll~~l~d~-~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~al 926 (2013)
+ ..++.|.+.+.+... .--.|..+..-+.-+.......++|.. |.++.+|...+.|.|..++..-...++.++..-
T Consensus 1230 ~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1230 ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 4 345666666655443 445566666666666666667788885 999999999999999999999999999999887
Q ss_pred Ch-hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhcc
Q 000159 927 GP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (2013)
Q Consensus 927 g~-~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~--gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~ 1003 (2013)
.+ .+.++++.++..++....+.++.......+-.+...+.. ..+.++|.+.=+.... ....+++++- ++..
T Consensus 1309 s~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee---~Ka~q~Lw~d---vW~e 1382 (1702)
T KOG0915|consen 1309 SPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE---EKANQELWND---VWAE 1382 (1702)
T ss_pred ChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH---HHHHHHHHHH---HHHH
Confidence 76 577888888887777766666433333333111222222 2466788655444311 1112333322 2222
Q ss_pred -CCCCCC-----hhhhHHH-HHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1004 -LSGFPD-----AAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1004 -~~~~~~-----~~~ll~p-l~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
.+.... ...++.+ +...+++....+|+.+..++..+...
T Consensus 1383 ~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1383 LVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred hCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence 222211 2333444 34456888889999988888765433
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-09 Score=131.50 Aligned_cols=582 Identities=15% Similarity=0.152 Sum_probs=355.6
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHHHHH
Q 000159 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLE 373 (2013)
Q Consensus 300 keR~eaL~~L~~l~~--~pki~~~~~~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~LL~ 373 (2013)
-.|...|+.|.-+.. .|......+.+++-++..... +.+..|+..|.+||-.--.-.+..|... ...++..+.+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 466778888877774 233222345555555554443 7788888888887765544455667533 4567888889
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh-cC------------
Q 000159 374 KLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET-SS------------ 435 (2013)
Q Consensus 374 klkdkk~~V~~aa~~aL~ai~~~~~~~l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~-~~------------ 435 (2013)
........|+.++..||..|+.-+.... +.++..-+.++++.|..|..++.+|-..+.+. .+
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9989999999999999999886522122 23455556788999999999999988854432 11
Q ss_pred --hh--HHH-HhhhhHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcC
Q 000159 436 --KA--AVL-KVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2013)
Q Consensus 436 --~~--~l~-~~l~~l~p~l~k~l~-------Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (2013)
+. .+. ..++.++|.|.+.|. |-+=.+-.||-.||..+..++|+..+.+.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl------------------ 366 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVL------------------ 366 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhH------------------
Confidence 10 011 223456666666651 111234566666666666666654322111
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCC
Q 000159 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (2013)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~ 583 (2013)
T Consensus 367 -------------------------------------------------------------------------------- 366 (859)
T KOG1241|consen 367 -------------------------------------------------------------------------------- 366 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc--hH----HHHHHHHHhcCCCCcccHH
Q 000159 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--QS----VEILVRLVCMLPGWSEKNV 657 (2013)
Q Consensus 584 ~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~--~~----~~~lv~~L~~~pgl~DsN~ 657 (2013)
+=+.+.+.+.+|+.|.+|+..+++++.+..+.. .. ...++.. ..|++.
T Consensus 367 --------------------~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~l------m~D~sl 420 (859)
T KOG1241|consen 367 --------------------PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINL------MSDPSL 420 (859)
T ss_pred --------------------HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHH------hcCchh
Confidence 223346777899999999999999988754321 11 0111111 123333
Q ss_pred HHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHH
Q 000159 658 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSE 737 (2013)
Q Consensus 658 qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~ 737 (2013)
.|. ++..+.++.+++-+.+... ...-+..+++.++.++ +..|++...
T Consensus 421 ~Vk-------------------dTaAwtlgrI~d~l~e~~~------------n~~~l~~~l~~l~~gL--~DePrva~N 467 (859)
T KOG1241|consen 421 WVK-------------------DTAAWTLGRIADFLPEAII------------NQELLQSKLSALLEGL--NDEPRVASN 467 (859)
T ss_pred hhc-------------------chHHHHHHHHHhhchhhcc------------cHhhhhHHHHHHHHHh--hhCchHHHH
Confidence 222 2444555555544332110 0011233455555554 567999999
Q ss_pred HHHHHHHHHHHh---CCCC----CCh---hhHHHHHHhc-CCCC-CcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHH
Q 000159 738 GILWMVSAVEDF---GVSH----LKL---KDLIDFCKDT-GLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPAL 805 (2013)
Q Consensus 738 ~l~~L~~li~~f---G~~~----l~~---k~li~~l~~~-gL~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~l 805 (2013)
++..+..+.+.. +.+. ... ..++.-+.+. ...+ ...+.|.+|.+.|++|-++...+..+.+.++-+.+
T Consensus 468 ~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~i 547 (859)
T KOG1241|consen 468 VCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVI 547 (859)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 888887777533 2211 111 2334333331 0112 23579999999999999999888777777777777
Q ss_pred HHHHHHHHh--hCCCCCCCCCccc-ccCcccc-----C---CCCCCCCCCCCCcccccccchHHHHhcCCC-ChHHHHHH
Q 000159 806 LSALDAEYE--KNPFEGTVVPKKT-VRASEST-----S---SVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLES 873 (2013)
Q Consensus 806 l~~Le~ef~--k~~~~~~p~p~R~-~r~~~~~-----~---s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~-~Wk~R~ea 873 (2013)
++.|+.-++ ..... .|. ...=++. + ...+ . .+-.+++.|-.-|+..++.+ .--+-.+|
T Consensus 548 l~kl~q~i~~~~l~~~-----dr~q~~eLQs~Lc~~Lq~i~rk~~--~---~~~~~~d~iM~lflri~~s~~s~~v~e~a 617 (859)
T KOG1241|consen 548 LEKLDQTISSQILSLA-----DRAQLNELQSLLCNTLQSIIRKVG--S---DIREVSDQIMGLFLRIFESKRSAVVHEEA 617 (859)
T ss_pred HHHHHHHHHHHhccHh-----hHHHHHHHHHHHHHHHHHHHHHcc--c---cchhHHHHHHHHHHHHHcCCccccchHHH
Confidence 777776655 11110 000 0000000 0 0000 0 11234455666777777773 34566788
Q ss_pred HHHHHHHHHhccccCCCCChhhHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcH--
Q 000159 874 IEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-- 950 (2013)
Q Consensus 874 le~l~~il~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~-- 950 (2013)
+-++..++...++.+..+. ..+.+.|..-| +-....|...|..+++.|+.+|+.+|.+|+..++..++++|+....
T Consensus 618 ~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR 696 (859)
T KOG1241|consen 618 FLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHR 696 (859)
T ss_pred HHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccc
Confidence 8888888875433333332 45556666666 4456789999999999999999999999999999999999998665
Q ss_pred HHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCC--------C-----ChhhHHHHHHHHHHHhccCCCC---CChhh
Q 000159 951 HMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAK--------L-----GAEGRKDLFDWLSKQLTGLSGF---PDAAH 1012 (2013)
Q Consensus 951 ~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k--------~-----~p~~R~~~l~~L~~~l~~~~~~---~~~~~ 1012 (2013)
.|.-+...|.+.++-.+| +++.+..+...|+... + .-.+|..+++.-.-.+..++.. ..+..
T Consensus 697 ~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p 776 (859)
T KOG1241|consen 697 NVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQP 776 (859)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhc
Confidence 477788899999999987 5667777776665211 0 1357888888777777766642 22334
Q ss_pred hHHHHHhhc-----CCCC-hHHHHHHHHHHHHHHHHcChhHHH
Q 000159 1013 LLKPASIAM-----TDKS-SDVRKAAEACIVEILRAGGQETIE 1049 (2013)
Q Consensus 1013 ll~pl~~~L-----~D~~-~dVR~aA~~~L~~l~~~~G~~~~~ 1049 (2013)
.+++|++.+ ++.+ ..+-.+|.-.++-+...+|.+...
T Consensus 777 ~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 777 YVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred chHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 455555432 3333 556677777888888889876544
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-08 Score=117.78 Aligned_cols=501 Identities=13% Similarity=0.105 Sum_probs=297.1
Q ss_pred HHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcch--hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH
Q 000159 328 RTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404 (2013)
Q Consensus 328 ~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~--~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~i 404 (2013)
.......+ +....|+..|++||..=..-.+..|. -....++..+.+........++.++..|+..++.-+....+-+
T Consensus 180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~y 259 (858)
T COG5215 180 AIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSY 259 (858)
T ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455 77778888888888775555566664 3355678888898888999999999999998775422233334
Q ss_pred HHHH-----HHHhhcCChHHHHHHHHHHHHHHH-hcChhH--------------HH-HhhhhHHHHHHHHhcC----C--
Q 000159 405 VEDV-----KTSVKNKVPLVRSLTLNWVTFCIE-TSSKAA--------------VL-KVHKDYVPICMECLND----G-- 457 (2013)
Q Consensus 405 l~~l-----~~~l~~Knp~vR~~~l~~L~~~l~-~~~~~~--------------l~-~~l~~l~p~l~k~l~D----s-- 457 (2013)
++.. ..++++.|-+|+..+.+|-....+ ...-.- +. ...++++|.+.++|.. .
T Consensus 260 mE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~ 339 (858)
T COG5215 260 MENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG 339 (858)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4432 356778999999999998854443 221110 00 1234566666666521 1
Q ss_pred -CHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccc
Q 000159 458 -TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK 536 (2013)
Q Consensus 458 -~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 536 (2013)
+=++-.+|..||..|....|+..++|.+
T Consensus 340 DdWn~smaA~sCLqlfaq~~gd~i~~pVl--------------------------------------------------- 368 (858)
T COG5215 340 DDWNPSMAASSCLQLFAQLKGDKIMRPVL--------------------------------------------------- 368 (858)
T ss_pred cccchhhhHHHHHHHHHHHhhhHhHHHHH---------------------------------------------------
Confidence 1235556666666666666655443311
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHH
Q 000159 537 SAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWK 616 (2013)
Q Consensus 537 ~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk 616 (2013)
+-+.+.+++.+|.
T Consensus 369 -------------------------------------------------------------------~FvEqni~~~~w~ 381 (858)
T COG5215 369 -------------------------------------------------------------------GFVEQNIRSESWA 381 (858)
T ss_pred -------------------------------------------------------------------HHHHHhccCchhh
Confidence 1123456777999
Q ss_pred HHHHHHHHHHHHHHhccCc--chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc
Q 000159 617 ERLEAISSLRQQVEAVQNL--DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (2013)
Q Consensus 617 ~Rl~ale~L~~~v~~~~~~--~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg 694 (2013)
.|.+|+..+++.+.+.... +....-.+..+.. ...|+-..|.. ...+|+..+.+.+.
T Consensus 382 nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n--~m~D~~l~vk~-------------------ttAwc~g~iad~va 440 (858)
T COG5215 382 NREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN--EMSDSCLWVKS-------------------TTAWCFGAIADHVA 440 (858)
T ss_pred hHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH--hcccceeehhh-------------------HHHHHHHHHHHHHH
Confidence 9999999999988774331 1110000110000 01233333322 23333333333222
Q ss_pred ChhhhHHHHHHHHHHHhhhCh----hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-----hh---hHHHH
Q 000159 695 DIKTRAHAMKCLTTFSEAVGP----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-----LK---DLIDF 762 (2013)
Q Consensus 695 D~K~r~~a~e~L~~l~e~~~~----~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~-----~k---~li~~ 762 (2013)
+ ..+| ..+.+..+-++ ..+|++...|....-.++..+....-. .+ .++.-
T Consensus 441 ~----------------~i~p~~Hl~~~vsa~liGl--~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~ 502 (858)
T COG5215 441 M----------------IISPCGHLVLEVSASLIGL--MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNA 502 (858)
T ss_pred H----------------hcCccccccHHHHHHHhhh--hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHH
Confidence 2 1111 12233333343 467888888888888888877643210 11 23332
Q ss_pred HHhc-CCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCC
Q 000159 763 CKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (2013)
Q Consensus 763 l~~~-gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~ 841 (2013)
+.+. .+...+.+.|.++...|++|..+..+.+.+.+.++-...++.|+.-+.-.... .. .
T Consensus 503 Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~--------l~-----------~ 563 (858)
T COG5215 503 LVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI--------LA-----------T 563 (858)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh--------hh-----------h
Confidence 2221 12334567899999999999999998888888777777777776654321100 00 0
Q ss_pred CCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch-hHHHHHHHHHHHH
Q 000159 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLG 920 (2013)
Q Consensus 842 ~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~~l~ 920 (2013)
+|.. +..++.. .-+.-|..|++...+.|.+.. ..|+..|.+.|... ...+-...+..|+
T Consensus 564 eD~~--------~~~elqS-----------N~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIs 623 (858)
T COG5215 564 EDQL--------LVEELQS-----------NYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAIS 623 (858)
T ss_pred HHHH--------HHHHHHH-----------HHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHH
Confidence 0000 0111111 123356667765555566653 56888888888655 3445567788899
Q ss_pred HHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000159 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2013)
Q Consensus 921 ~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2013)
.++..+|+.|++|+..|+|.+.+.|......|...|..-+..+...+|-+- .+ ..+.+ ..-|.+.
T Consensus 624 al~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df-~~-y~d~~-------------ms~LvQ~ 688 (858)
T COG5215 624 ALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF-NI-YADVL-------------MSSLVQC 688 (858)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH-HH-HHHHH-------------HHHHHHH
Confidence 999999999999999999999999999999999999999888888876221 11 11111 1112223
Q ss_pred hccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHHHHHc
Q 000159 1001 LTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAG 1043 (2013)
Q Consensus 1001 l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~L~~l~~~~ 1043 (2013)
++ ++....-++| +++|+.|-...+-.+.+..|..+|..+
T Consensus 689 ls----s~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~ 728 (858)
T COG5215 689 LS----SEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLF 728 (858)
T ss_pred hc----ChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 32 1122344555 777777777776666666666666544
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.3e-09 Score=123.74 Aligned_cols=206 Identities=19% Similarity=0.271 Sum_probs=172.4
Q ss_pred ccCCHHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHH
Q 000159 295 KATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~--pki~~~~~~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~L 371 (2013)
.+..-.+|++|+.+|..++.. -.++...|.+|+..+..++.| .+......|++.|+.+.+.-...|..+.+..+-.+
T Consensus 297 g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~ 376 (516)
T KOG2956|consen 297 GSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKV 376 (516)
T ss_pred CccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHH
Confidence 335888999999999987743 334556789999999999998 78889999999999999999999999999999999
Q ss_pred HHHhccCcH-HHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000159 372 LEKLKEKKP-TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (2013)
Q Consensus 372 L~klkdkk~-~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (2013)
|+..+|..+ .++.|...|+..+..+ .++ ..+.-|...+.+-.-+.-..+++.+.++++..+...+...+++++|.+
T Consensus 377 Leaa~ds~~~v~~~Aeed~~~~las~--~P~-~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~ 453 (516)
T KOG2956|consen 377 LEAAKDSQDEVMRVAEEDCLTTLASH--LPL-QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCV 453 (516)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHhh--Cch-hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHH
Confidence 999999876 4566666666667665 333 344444444444444455678889999999999988889999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcC
Q 000159 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2013)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (2013)
+++.+.+...||++|.-||..+...+|++.++|++..|...+++.|+=|++++
T Consensus 454 iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 454 IQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred HHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988899999999999999998888764
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.2e-07 Score=111.33 Aligned_cols=571 Identities=16% Similarity=0.197 Sum_probs=340.4
Q ss_pred HHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCC---C
Q 000159 326 VCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCL---N 400 (2013)
Q Consensus 326 l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~-~~~---~ 400 (2013)
|.+.|+.+.+ -...+-+..+++|++.||.-+|-..-+|+..++..+=..++|..+.||.-+..|+.+++.. +.. .
T Consensus 512 llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~ 591 (1172)
T KOG0213|consen 512 LLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQ 591 (1172)
T ss_pred HHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHH
Confidence 3344444444 2245567888999999999999988899999999999999999999999999999999987 112 2
Q ss_pred hHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 401 LVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 401 l~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
++.++..|..+.. |.. ..=..-|+.+..++.-.....-.-+..+++-.+.+-.+-+|.+.++.-.+.+..++...|-.
T Consensus 592 fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~ 670 (1172)
T KOG0213|consen 592 FDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE 670 (1172)
T ss_pred HHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC
Confidence 3556666666554 332 12122233333322222222111223444445555555555555555555555555554432
Q ss_pred hHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q 000159 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (2013)
Q Consensus 480 ~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~ 559 (2013)
+--...+-| -+.+..-.+ ++. ++-++
T Consensus 671 ~~y~r~dil--------p~ff~~fw~-----------------------------rrm-----A~drr------------ 696 (1172)
T KOG0213|consen 671 PAYIRFDIL--------PEFFFSFWG-----------------------------RRM-----ALDRR------------ 696 (1172)
T ss_pred HHHHhhhhh--------HHHHhhhhh-----------------------------hhh-----hcccc------------
Confidence 211111101 111110000 000 00000
Q ss_pred CCCCCCCCCCCCCcCCcCCCCCCCCCCCCC---CHHHHHHHhh-ccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc
Q 000159 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEM---SLEEIESRLG-SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL 635 (2013)
Q Consensus 560 ~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~---S~ee~e~~~~-~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~ 635 (2013)
.+.. +.-++..++. +.+-.-++..|.+..-.-|...++.+..++...+..
T Consensus 697 --------------------------~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 697 --------------------------NYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred --------------------------chhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 0000 0011111110 011133455667777777777777777777664432
Q ss_pred c--h-HHHHHHHHHhcCCCCc--ccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC--hhhhHHHHHHHHH
Q 000159 636 D--Q-SVEILVRLVCMLPGWS--EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTT 708 (2013)
Q Consensus 636 ~--~-~~~~lv~~L~~~pgl~--DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~e~L~~ 708 (2013)
+ . .-+-+++.+.. .|. ++.-.|+-.+|.++. ..++.-.+.++..++..++-+|-+ +++|..|.+++..
T Consensus 751 diderleE~lidgil~--Afqeqtt~d~vml~gfg~V~---~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~ 825 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILY--AFQEQTTEDSVMLLGFGTVV---NALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISS 825 (1172)
T ss_pred cccHHHHHHHHHHHHH--HHHhcccchhhhhhhHHHHH---HHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 2 1 12233333221 122 233334444444433 322222334566677777777766 4789999888887
Q ss_pred HHhhh---ChhHHHH----HHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC--ChhhHHHHHHhcCCCCCcHhHHHHH
Q 000159 709 FSEAV---GPGFIFE----RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQSSAAATRNAT 779 (2013)
Q Consensus 709 l~e~~---~~~~Vl~----~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l--~~k~li~~l~~~gL~~~n~~VR~aA 779 (2013)
++... +-+..+. .|++.+ .-..|.|.-..|..|..++.-.|.... +++.+++-+-.. |.+....|...+
T Consensus 826 la~Vlktc~ee~~m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPI-LknrheKVqen~ 903 (1172)
T KOG0213|consen 826 LAKVLKTCGEEKLMGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPI-LKNRHEKVQENC 903 (1172)
T ss_pred HHHHHHhccHHHHHHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHh-hhhhHHHHHHHH
Confidence 76543 3333333 345554 567899999999999999998887654 578899988888 999999999999
Q ss_pred HHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcc-cccCccccCCCCCCCCCCCCCcccccccchHH
Q 000159 780 IKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKK-TVRASESTSSVSSGGSDGLPREDISGKFTPTL 858 (2013)
Q Consensus 780 ~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R-~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~l 858 (2013)
+.+++.+... |+. | + +.| .. .|.=+|
T Consensus 904 IdLvg~Iadr-gpE---~------------------v-------~aREWM------------------------RIcfeL 930 (1172)
T KOG0213|consen 904 IDLVGTIADR-GPE---Y------------------V-------SAREWM------------------------RICFEL 930 (1172)
T ss_pred HHHHHHHHhc-Ccc---c------------------C-------CHHHHH------------------------HHHHHH
Confidence 9999988632 211 0 0 000 00 133466
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHH
Q 000159 859 VKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2013)
Q Consensus 859 l~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ll 938 (2013)
++.+.+.|=.+|..|.+.++-|.. .|.| .+++..|..-|+-...+.+.-+--.|+-+++.+| +| .++
T Consensus 931 lelLkahkK~iRRaa~nTfG~Iak----aIGP---qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~----pF--tVL 997 (1172)
T KOG0213|consen 931 LELLKAHKKEIRRAAVNTFGYIAK----AIGP---QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG----PF--TVL 997 (1172)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH----hcCH---HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC----ch--hhh
Confidence 777777777789999998887653 4555 4567776665532222222111122233333333 34 689
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC-C--CC
Q 000159 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-F--PD 1009 (2013)
Q Consensus 939 p~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~--~~ 1009 (2013)
|.+++-+.-...+|..-...+|.-+++.+| +-.+.|.|.++|.+. .+.-|+.+...+.-..-+... . ..
T Consensus 998 PalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr--D~vhRqta~~~I~Hl~Lg~~g~g~eda 1075 (1172)
T KOG0213|consen 998 PALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR--DLVHRQTAMNVIKHLALGVPGTGCEDA 1075 (1172)
T ss_pred HHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc--cHHHHHHHHHHHHHHhcCCCCcCcHHH
Confidence 999999999999999999999999999987 345677888888765 355677766665433222211 1 12
Q ss_pred hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000159 1010 AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2013)
Q Consensus 1010 ~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2013)
+.+++.-+...+-|.++-|-.+..+|+..+...+|...|.+++
T Consensus 1076 ~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1076 LIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred HHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 3455555777889999999999999999999999999998886
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-05 Score=101.65 Aligned_cols=564 Identities=16% Similarity=0.155 Sum_probs=335.9
Q ss_pred ccCCHHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH-------Hhhhcchhh--
Q 000159 295 KATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-------GLRTHFSGS-- 363 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~--pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~-------~L~~~f~~~-- 363 (2013)
.+.+-+.|..|+..|.+|..- ..+.+---..++..-...++..|-.|...|+..-..++. ..+..++.+
T Consensus 227 q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 567778899999999887641 111111011244444456667777787777655543332 223333333
Q ss_pred ----------hHhHHHHHHHHhcc--Cc-----HHHHHHHHHHHHHHHHhcCCC---hHhHHHHHHHHhhcCChHHHHHH
Q 000159 364 ----------SRFLLPVLLEKLKE--KK-----PTVAESLTQTLQAMHKAGCLN---LVDVVEDVKTSVKNKVPLVRSLT 423 (2013)
Q Consensus 364 ----------~~~llp~LL~klkd--kk-----~~V~~aa~~aL~ai~~~~~~~---l~~il~~l~~~l~~Knp~vR~~~ 423 (2013)
+..++|.||+.+-. .. =++..|+..||.-+... .. +.-++|.|.+.+++.+|.-|..+
T Consensus 307 p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--~~D~Iv~~Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 307 PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--VGDDIVPHVLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--hcccchhhhHHHHHHhcCCcchhhhhHH
Confidence 34899999998843 22 24788898999877764 22 23455556667778999999988
Q ss_pred HHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcC
Q 000159 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2013)
Q Consensus 424 l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (2013)
.-.+...+..-.+..+.+.....+|.+...+.|+.--||+.+.-+|+.+..++.+...+... -..++.-.+++.
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~------l~~~l~~l~~gL 458 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQEL------LQSKLSALLEGL 458 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhh------hhHHHHHHHHHh
Confidence 88888888766666677888999999999999999999999999999999888754222110 011222222221
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCC
Q 000159 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (2013)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~ 583 (2013)
-+. |. .+ . . ..
T Consensus 459 ~De-------------------Pr--------va------------------------------------~-N--~C--- 469 (859)
T KOG1241|consen 459 NDE-------------------PR--------VA------------------------------------S-N--VC--- 469 (859)
T ss_pred hhC-------------------ch--------HH------------------------------------H-H--HH---
Confidence 000 00 00 0 0 00
Q ss_pred CCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCC---CCcccHHHHH
Q 000159 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP---GWSEKNVQVQ 660 (2013)
Q Consensus 584 ~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~p---gl~DsN~qV~ 660 (2013)
-..++.-|. +++..-+. ...+..++..+.++.-|.+.- .-+++| .+
T Consensus 470 --WAf~~Laea--------------------------~~eA~~s~-~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN--LR 518 (859)
T KOG1241|consen 470 --WAFISLAEA--------------------------AYEAAVSN-GQTDPATPFYEAIIGSLLKVTDRADGNQSN--LR 518 (859)
T ss_pred --HHHHHHHHH--------------------------HHHhccCC-CCCCccchhHHHHHHHHHhhccccccchhh--HH
Confidence 000010000 00000000 001112223445555443221 234555 56
Q ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHH
Q 000159 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGIL 740 (2013)
Q Consensus 661 ~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~ 740 (2013)
..++++|..++..+++-....+..+.+.+.+||+. ++. .+++...-.++--.++.-.++
T Consensus 519 ~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q---------~i~------------~~~l~~~dr~q~~eLQs~Lc~ 577 (859)
T KOG1241|consen 519 SAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQ---------TIS------------SQILSLADRAQLNELQSLLCN 577 (859)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH---------HHH------------HHhccHhhHHHHHHHHHHHHH
Confidence 78899999999876543333333444444444433 111 111111111111223445577
Q ss_pred HHHHHHHHhCCCCCC-hhhHHHHHHhcCCCC-CcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCC
Q 000159 741 WMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF 818 (2013)
Q Consensus 741 ~L~~li~~fG~~~l~-~k~li~~l~~~gL~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~ 818 (2013)
+|..++..+|..... ...++..+... ++. ....|-+.|.-.+++|...+|..|..|+..++|-+...+...-
T Consensus 578 ~Lq~i~rk~~~~~~~~~d~iM~lflri-~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~----- 651 (859)
T KOG1241|consen 578 TLQSIIRKVGSDIREVSDQIMGLFLRI-FESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ----- 651 (859)
T ss_pred HHHHHHHHccccchhHHHHHHHHHHHH-HcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch-----
Confidence 788888888874322 34577777666 777 4566899999999999999999999999888887766653321
Q ss_pred CCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHH
Q 000159 819 EGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG 898 (2013)
Q Consensus 819 ~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~ 898 (2013)
++++-..++-.+..+.+.-+..|.|.. .+++.
T Consensus 652 -----------------------------------------------e~qVc~~aVglVgdl~raL~~~i~py~-d~~mt 683 (859)
T KOG1241|consen 652 -----------------------------------------------EYQVCAAAVGLVGDLARALEDDILPYC-DELMT 683 (859)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHH
Confidence 122333455556666654445666664 78999
Q ss_pred HHHhcccch--hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh---CCC--------cHHHHHHHHHHHHHHHH
Q 000159 899 GLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---GDN--------KKHMRECTLTVLDAWLA 965 (2013)
Q Consensus 899 ~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L---~D~--------k~~Vr~aa~~aL~~i~~ 965 (2013)
.|.+.|+.. ..+|.-..+.+++.||-++|.+|++|+..+++.+-..- .|. -..+|+++.++-+.++.
T Consensus 684 ~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~q 763 (859)
T KOG1241|consen 684 VLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQ 763 (859)
T ss_pred HHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 999998655 45788888999999999999999999999999887655 122 12589999999888887
Q ss_pred hcC-------chhhHHHHHHHHh----cCCCChhhHHHHHHHHHHHhccCCCC---C-ChhhhHHH-HHhhcCCCChHHH
Q 000159 966 AVH-------LDKMVPYVTTALT----DAKLGAEGRKDLFDWLSKQLTGLSGF---P-DAAHLLKP-ASIAMTDKSSDVR 1029 (2013)
Q Consensus 966 ~~g-------l~~ll~~l~~~L~----~~k~~p~~R~~~l~~L~~~l~~~~~~---~-~~~~ll~p-l~~~L~D~~~dVR 1029 (2013)
-++ +..++|.|...+. ++..+-.+-..+++.+......+++. . ...+++.- |..+..-+....|
T Consensus 764 glk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK 843 (859)
T KOG1241|consen 764 GLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTK 843 (859)
T ss_pred HhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhH
Confidence 765 2345566655554 22222233455666665555545432 1 12345555 4455655666667
Q ss_pred HHHHHHHHHHHH
Q 000159 1030 KAAEACIVEILR 1041 (2013)
Q Consensus 1030 ~aA~~~L~~l~~ 1041 (2013)
+.|.-+...+-+
T Consensus 844 ~~A~wa~e~ikr 855 (859)
T KOG1241|consen 844 DLARWATEEIKR 855 (859)
T ss_pred HHHHHHHHHHHH
Confidence 777666555443
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-08 Score=120.13 Aligned_cols=378 Identities=17% Similarity=0.207 Sum_probs=262.5
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchH--HHHHHHHHhcCC-CCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLP-GWSEKNVQVQQQVIEVINYLAATATKFPK 679 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~--~~~lv~~L~~~p-gl~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (2013)
++.+..+|.++-+..|.+|.-+++.++++.-..++. ..-++..|...- .=.++|. ...+|-.+...+-.++.-..
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~--rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANM--RKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccc--ccchHHHHHHHHHHhccccH
Confidence 456789999999999999999999999873222222 233344332110 0012222 22444444444333333233
Q ss_pred hhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhChh------HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC
Q 000159 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (2013)
Q Consensus 680 ~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~~~------~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~ 751 (2013)
.+...+++.++..++|. ++|--|.+.|..++.....+ .++..+++.. .....-|+ ++.+.+..++++.-.
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kls-aDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLS-ADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHh-cCCccccc-cHHHHHHHHHHHhcc
Confidence 37888999999999984 78999999999999876543 3455555543 22222232 333444445544332
Q ss_pred ---CCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccc
Q 000159 752 ---SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (2013)
Q Consensus 752 ---~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~ 828 (2013)
..+++..+++.+..- +-..||.+|..-+..+..|+...+-.+-.|+.+
T Consensus 158 e~~~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~---------------------------- 208 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPS---------------------------- 208 (675)
T ss_pred ccccccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchH----------------------------
Confidence 247889999999886 888899999999988888775544333333322
Q ss_pred cCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC--ChhhHHHHHHhcccc
Q 000159 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA--GTGELFGGLRGRLYD 906 (2013)
Q Consensus 829 r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~--~~~eL~~~L~~rL~D 906 (2013)
+.+.|+..++|.+-.+|.-.=..+.+++.+- +-.|. ++++.+..|...+..
T Consensus 209 -------------------------~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI--~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 209 -------------------------LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI--RSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred -------------------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH--hcCccccCcccchhhccccccC
Confidence 3345677778887777755555555555532 11221 478999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC---------chhhHHHH
Q 000159 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH---------LDKMVPYV 976 (2013)
Q Consensus 907 sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~g---------l~~ll~~l 976 (2013)
++.-++..|+..+.++.+--|+.+-.|...++..++.++.|+.. .++..+...-+.+..-++ +..+++.+
T Consensus 262 s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999887 477666555444444332 34677778
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 977 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 977 ~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
...|.+. ..+.|.++++|+.-...+.+.. .+..++...+++.|.|++.+|-..+-..+..+...
T Consensus 342 ~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 342 TKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 8888776 4789999999999877777653 34466777799999999999999988888777544
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.1e-08 Score=118.04 Aligned_cols=400 Identities=14% Similarity=0.171 Sum_probs=278.6
Q ss_pred HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHH
Q 000159 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (2013)
Q Consensus 717 ~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~ 795 (2013)
.++++++.....+.+.--|.+.+..++.+.-..|.+... ++.+++-+..+ +.+++..||.-|.+.+-.+.+....++.
T Consensus 42 k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c-f~D~d~~vRyyACEsLYNiaKv~k~~v~ 120 (675)
T KOG0212|consen 42 KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC-FSDQDSQVRYYACESLYNIAKVAKGEVL 120 (675)
T ss_pred HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh-ccCccceeeeHhHHHHHHHHHHhccCcc
Confidence 345555543323333223448888888887777775422 44566666665 9999999999999988777766666666
Q ss_pred hhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHH
Q 000159 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (2013)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale 875 (2013)
.|++.+-.++. |+.. |.+-.+| .|.+
T Consensus 121 ~~Fn~iFdvL~--------klsa---------------------------------------------Dsd~~V~-~~ae 146 (675)
T KOG0212|consen 121 VYFNEIFDVLC--------KLSA---------------------------------------------DSDQNVR-GGAE 146 (675)
T ss_pred cchHHHHHHHH--------HHhc---------------------------------------------CCccccc-cHHH
Confidence 56544333222 2211 1111111 1112
Q ss_pred H----HHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHH
Q 000159 876 A----VNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951 (2013)
Q Consensus 876 ~----l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~ 951 (2013)
. +.+|+.+... +.+ +.++++.|+.|+.+.|...++.-+..+..+-..-+-+|-.|...+++++++.|+|+...
T Consensus 147 LLdRLikdIVte~~~--tFs-L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~e 223 (675)
T KOG0212|consen 147 LLDRLIKDIVTESAS--TFS-LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDE 223 (675)
T ss_pred HHHHHHHHhcccccc--ccC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHH
Confidence 2 2233322111 222 58999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcC
Q 000159 952 MRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMT 1022 (2013)
Q Consensus 952 Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~ 1022 (2013)
||+-+..+|..+...+. .+.+++.+..-+.++ +|..+.-++.|+.+.+.-.+.. .....++..++.|+.
T Consensus 224 Vr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s 301 (675)
T KOG0212|consen 224 VRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLS 301 (675)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCC
Confidence 99999999999998762 456677777777665 5889999999999988765542 234556666888998
Q ss_pred CCCh-HHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 1023 DKSS-DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNR 1101 (2013)
Q Consensus 1023 D~~~-dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1101 (2013)
|... .++..|+..-..++..++.+....-
T Consensus 302 ~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-------------------------------------------------- 331 (675)
T KOG0212|consen 302 DTEEMSIKEYAQMVNGLLLKLVSSERLKEE-------------------------------------------------- 331 (675)
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhccc--------------------------------------------------
Confidence 8777 5777777555455554443211000
Q ss_pred CCccCCCCCCCCCCCcccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcc
Q 000159 1102 AISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLS 1181 (2013)
Q Consensus 1102 s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs 1181 (2013)
.+-+ .-+| -+...+++
T Consensus 332 ------------------------id~~----------------------------~ii~------------vl~~~l~~ 347 (675)
T KOG0212|consen 332 ------------------------IDYG----------------------------SIIE------------VLTKYLSD 347 (675)
T ss_pred ------------------------cchH----------------------------HHHH------------HHHHHhhc
Confidence 0000 0111 23334455
Q ss_pred cCHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHH
Q 000159 1182 TDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1261 (2013)
Q Consensus 1182 ~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L 1261 (2013)
..-..|+.+++=+.-.....+-.++.+.|-||--+..-+.|+.-.|+.+.|+.+..+..--.+-+ -..|+-.|
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~-------~~~fl~sL 420 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPN-------LRKFLLSL 420 (675)
T ss_pred chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccccc-------HHHHHHHH
Confidence 55567889998888888888888888899999998889999999999999999998654433332 27788888
Q ss_pred HHhhcCChHHHHHHHHHHHHHHhhccCccccHHHHH
Q 000159 1262 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYIL 1297 (2013)
Q Consensus 1262 ~~K~Gd~k~~vr~~v~~il~~i~~v~p~skvf~~l~ 1297 (2013)
++..-+-+--++.+--=|++++|...-+.+||..+.
T Consensus 421 L~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a 456 (675)
T KOG0212|consen 421 LEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIA 456 (675)
T ss_pred HHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHH
Confidence 888877666677777788899999999999998753
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9e-08 Score=116.55 Aligned_cols=171 Identities=19% Similarity=0.187 Sum_probs=131.8
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHH
Q 000159 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2013)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (2013)
-+.++.-|+-...+..+..|+..+...+.+..+--+.--|...|+..|+.++..|-+.+|.|+.+.|+. .++-.
T Consensus 696 ILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq------dvL~~ 769 (975)
T COG5181 696 ILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ------DVLDI 769 (975)
T ss_pred hhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH------HHHHH
Confidence 456667788888899999888755444444333344555666677889999999999999999999976 67888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC-CCChhhhHHH-HH
Q 000159 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKP-AS 1018 (2013)
Q Consensus 941 ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~~~~~~ll~p-l~ 1018 (2013)
+++.|+-+.-..|....-++.-+++.||+=.++|.+..-...+ +..+..+++..+.-.|+-++. +.+..-.+.| +-
T Consensus 770 LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP--e~nVQnGvLkam~fmFeyig~~s~dYvy~itPlle 847 (975)
T COG5181 770 LLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP--EANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLE 847 (975)
T ss_pred HHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc--hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999888888888889999999999999999888777766 456778888877766665543 2344555556 55
Q ss_pred hhcCCCChHHHHHHHHHHHHH
Q 000159 1019 IAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
.+|.|+++--|..|...+..+
T Consensus 848 DAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 848 DALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred hhhcccchHHHHHHHHHHHHH
Confidence 699999999999988766544
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-06 Score=115.46 Aligned_cols=563 Identities=18% Similarity=0.134 Sum_probs=322.3
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHH
Q 000159 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (2013)
Q Consensus 293 ~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (2013)
.+...+-+.|..+...+..+.-..+.... -..+++.+...+ |.+.-|...+..=++.+....+ -..|...++|.+.
T Consensus 90 e~~~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le 165 (759)
T KOG0211|consen 90 ELSNTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLE 165 (759)
T ss_pred ccCchhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHH
Confidence 34455566677777666554421111111 456777777777 7776555544444444333221 1256777888887
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh---cCCh-HHHHHHHHHHHHHHHhcChhHHHHhhhhHHH
Q 000159 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK---NKVP-LVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (2013)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~---~Knp-~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p 448 (2013)
.-.-+....||+++.+++..+... .+-....+.+...+. ...| +-|.-++..+..+....+...+ -..+.|
T Consensus 166 ~l~~~eet~vr~k~ve~l~~v~~~--~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v---k~elr~ 240 (759)
T KOG0211|consen 166 LLATVEETGVREKAVESLLKVAVG--LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV---KRELRP 240 (759)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH---HHHHHH
Confidence 777888888999999999988764 332333333333322 1122 2355555666665554443222 266778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCC
Q 000159 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEA 528 (2013)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 528 (2013)
.......|..++||.++.+-++.+.+.++..... +.+.+.....
T Consensus 241 ~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~~~L--------------------------------- 284 (759)
T KOG0211|consen 241 IVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTLIQL--------------------------------- 284 (759)
T ss_pred HHHhhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHHhhh---------------------------------
Confidence 8889999999999999999999998888762111 1111110000
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHh
Q 000159 529 SESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVG 608 (2013)
Q Consensus 529 ~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~ 608 (2013)
T Consensus 285 -------------------------------------------------------------------------------- 284 (759)
T KOG0211|consen 285 -------------------------------------------------------------------------------- 284 (759)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 000159 609 QLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLG 688 (2013)
Q Consensus 609 ~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~ 688 (2013)
+.+..=..|+.|++.+.++..-+...++....+...+.. -..|.+..|.-..-+....+....+. . ..-...++.
T Consensus 285 -~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~--~~~d~~~~v~~~~~~~~~~L~~~~~~-~-~~~~~~~~~ 359 (759)
T KOG0211|consen 285 -LRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQ--AVEDGSWRVSYMVADKFSELSSAVGP-S-ATRTQLVPP 359 (759)
T ss_pred -hhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH--HhcChhHHHHHHHhhhhhhHHHHhcc-c-cCcccchhh
Confidence 000111234555555554444322221111111111100 02344444433333333333332222 0 011122344
Q ss_pred HHhhhcChh--hhHHHHHHHHHHHhhhC----hhHHHHHHHHHh---hhCCChhHHHHHHHHHHHHHHHhCCCCCChhhH
Q 000159 689 ISERVADIK--TRAHAMKCLTTFSEAVG----PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 759 (2013)
Q Consensus 689 LveKlgD~K--~r~~a~e~L~~l~e~~~----~~~Vl~~L~~~l---~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~l 759 (2013)
...-++|.. .|.++..-...++.... ++...+.+++.+ ..+.|+.|+......+......+|... .+..+
T Consensus 360 ~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~-ti~~l 438 (759)
T KOG0211|consen 360 VSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER-TISEL 438 (759)
T ss_pred HHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc-Ccccc
Confidence 444455542 23333333444444433 333333333322 246677777776666655555555321 23445
Q ss_pred HHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCC
Q 000159 760 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (2013)
Q Consensus 760 i~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~ 839 (2013)
++..... +.+-.+.||..-+..+..+ +.+... .
T Consensus 439 lp~~~~~-l~de~~~V~lnli~~ls~~---------------------------~~v~~v----~--------------- 471 (759)
T KOG0211|consen 439 LPLLIGN-LKDEDPIVRLNLIDKLSLL---------------------------EEVNDV----I--------------- 471 (759)
T ss_pred Chhhhhh-cchhhHHHHHhhHHHHHHH---------------------------HhccCc----c---------------
Confidence 5555554 6666677776555332111 111100 0
Q ss_pred CCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHH
Q 000159 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL 919 (2013)
Q Consensus 840 ~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l 919 (2013)
|. .-++..+.+.+.....|.+|++|.+.++.+-.++..-...+. + ..+...+...+.|.-..++..|.+.+
T Consensus 472 -g~-----~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~--~-~~~~~l~~~~l~d~v~~Ir~~aa~~l 542 (759)
T KOG0211|consen 472 -GI-----STVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF--D-EKLAELLRTWLPDHVYSIREAAARNL 542 (759)
T ss_pred -cc-----hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh--h-HHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 00 001112334455556677999999999999888764211111 1 22344455667787788999999999
Q ss_pred HHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhhHHHHHH
Q 000159 920 GAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFD 995 (2013)
Q Consensus 920 ~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----~~ll~~l~~~L~~~k~~p~~R~~~l~ 995 (2013)
..++...|..+. ...++|.++...++..-.+|.+...++..++..+|- +.++|.+.....++ .|.+|..++.
T Consensus 543 ~~l~~~~G~~w~--~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak 618 (759)
T KOG0211|consen 543 PALVETFGSEWA--RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAK 618 (759)
T ss_pred HHHHHHhCcchh--HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHH
Confidence 999999996654 458899999999999889999999999999999985 44556666655566 5899999999
Q ss_pred HHHHHhccCCCCCChhhhHHHHHhhc-CCCChHHHHHHHHHHHHHHHHcChhH
Q 000159 996 WLSKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQET 1047 (2013)
Q Consensus 996 ~L~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~dVR~aA~~~L~~l~~~~G~~~ 1047 (2013)
+|...+..+.. +.....+.|+..+| .|.+.+||-.|..++..+..+.=+..
T Consensus 619 ~L~~i~~~L~~-~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~ 670 (759)
T KOG0211|consen 619 HLPKILKLLDE-SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESS 670 (759)
T ss_pred HHHHHHhhcch-HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhh
Confidence 99887765543 23456677765555 89999999999999998877665543
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.9e-06 Score=100.18 Aligned_cols=688 Identities=16% Similarity=0.221 Sum_probs=378.3
Q ss_pred hhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHh-hhcCCcHHHHHHHHHHHHHHHHHhch-----------
Q 000159 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVADSNAPVQDKALDALIAYLKAADA----------- 85 (2013)
Q Consensus 18 erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k-~v~DsN~~vqe~~leal~~~v~~~~~----------- 85 (2013)
=+++...-..|.+|+..|.+.-.+- .....|++..+++.. -+.|.---..-+-++-++.=+.-...
T Consensus 175 LkvKNG~~~mR~~~lRiLtdkav~f--g~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~ 252 (975)
T COG5181 175 LKVKNGGKRMRMEGLRILTDKAVNF--GAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVG 252 (975)
T ss_pred hhcccCCchhhHHHHHHHHHHhhcc--cHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEee
Confidence 3566777888999999998875432 233456666655543 35665555555555555543322211
Q ss_pred ------hhhhh--HHHHHHHHHHhhc-C----C-C-------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hcCChh
Q 000159 86 ------DAGRY--AKEVCDAIAAKCL-T----G-R-------PKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-KNKVAK 143 (2013)
Q Consensus 86 ------~~~~~--~~~v~~~LveK~l-~----~-k-------~~~k~~A~~~ll~~~E~~~~~~v~~~L~~~~-~~KnpK 143 (2013)
+..+. ..+|+..|+..|. + + | +=+|+..-.+.-.++..-..+.++.-|.... +.|.|+
T Consensus 253 pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~ 332 (975)
T COG5181 253 PLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWE 332 (975)
T ss_pred ccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchh
Confidence 11111 2456666666652 1 0 2 2233333222233332223344444443333 567999
Q ss_pred hHHHHHHHHHHHHHHhCCCCcC-hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhC-hH-------
Q 000159 144 AVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKM-RD------- 214 (2013)
Q Consensus 144 v~~~~l~~L~~~l~~fG~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~L-k~------- 214 (2013)
.+-.|+.++.++..-.|..+++ ++++++.+.+++.|...-||=-+...+-.++...|+=-+ .. |+.. .|
T Consensus 333 aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygi-e~-fd~vl~pLw~g~~~ 410 (975)
T COG5181 333 ARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGI-EQ-FDEVLCPLWEGASQ 410 (975)
T ss_pred hhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcch-HH-HHHHHHHHHHHHHh
Confidence 9999999999999999998776 799999999999999999999998888888888886211 11 1111 11
Q ss_pred HHHHHHHHHHHhcCCCCCCCc-------cchhhhhHhhhhhccccCCCCCCCCCC---------CCCCCCCCCCCCCCCc
Q 000159 215 TMKKELEVELVNVSGTARPTR-------KIRAEQDKELGQELISEDVGPGPSEES---------TADVPPEIDEYELVDP 278 (2013)
Q Consensus 215 ~q~keLe~~f~k~~~~~~P~R-------~~rs~~~~~~~~ea~~~~~g~~~~~~~---------~~~~~~~iD~~dl~~~ 278 (2013)
.-=++|-. |=|.-|..-|.. ++|....- .-.+..+ ++++. -=...+.++|+-+.+.
T Consensus 411 hrgk~l~s-fLkA~g~iiplm~peYa~h~tre~m~i-v~ref~s------pdeemkk~~l~v~~~C~~v~~~tp~~lr~~ 482 (975)
T COG5181 411 HRGKELVS-FLKAMGFIIPLMSPEYACHDTREHMEI-VFREFKS------PDEEMKKDLLVVERICDKVGTDTPWKLRDQ 482 (975)
T ss_pred cCCchHHH-HHHHhccccccCChHhhhhhHHHHHHH-HHHHhCC------chhhcchhHHHHHHHHhccCCCCHHHHHHh
Confidence 00011111 111112212211 11111000 0000000 00000 0001122444433332
Q ss_pred ccccccCcchhhhhhhccCCHHHHHHH---------HHH--HHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHH
Q 000159 279 VDILTPLEKSGFWEGVKATKWSERKDA---------VAE--LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347 (2013)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~kWkeR~ea---------L~~--L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~ 347 (2013)
| . +.| -+..|.+|.+. +.. |.+.... ..+++.+..-+.|.--.-+..++.
T Consensus 483 v------~-pef----F~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~--------~~v~~kil~~~~De~ep~r~m~a~ 543 (975)
T COG5181 483 V------S-PEF----FSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD--------PRVSRKILEYYSDEPEPYRKMNAG 543 (975)
T ss_pred h------c-HHh----hchHHHhhhcccccccceeehhHHHHHHHcCC--------hHHHHHHHhhccCCcchhhhhhhH
Confidence 2 1 234 45679888765 111 1222221 234455555556665455555666
Q ss_pred HHHHHHHHhh-hcch-hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh----cCCChHhHHHHHHHHhhcCChHHHH
Q 000159 348 AIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA----GCLNLVDVVEDVKTSVKNKVPLVRS 421 (2013)
Q Consensus 348 ~l~~La~~L~-~~f~-~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~----~~~~l~~il~~l~~~l~~Knp~vR~ 421 (2013)
+...+...|+ .+|+ .....++..++..|.+....+.- ...|..++... +...++.++..++..|+||.|.+|+
T Consensus 544 ~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~-il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~ 622 (975)
T COG5181 544 LVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGL-ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRI 622 (975)
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccE-EEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHH
Confidence 6666666665 3464 66778888888888876543321 11122221111 1245678888899999999999999
Q ss_pred HHHHHHHHHH---HhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHH
Q 000159 422 LTLNWVTFCI---ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 498 (2013)
Q Consensus 422 ~~l~~L~~~l---~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e 498 (2013)
.++..++.+. ..|.... .+.-+--++...++.-.|+|=-.-..|+-.+..+.+.+.+
T Consensus 623 ~aadl~~sl~~vlk~c~e~~---~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m----------------- 682 (975)
T COG5181 623 RAADLMGSLAKVLKACGETK---ELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM----------------- 682 (975)
T ss_pred HHHHHHHHHHHHHHhcchHH---HHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc-----------------
Confidence 9887766543 3333221 1233444556666666666544333333333333332211
Q ss_pred HHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCC
Q 000159 499 MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLT 578 (2013)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~ 578 (2013)
+||..
T Consensus 683 -----------------------------------------------qpPi~---------------------------- 687 (975)
T COG5181 683 -----------------------------------------------QPPIS---------------------------- 687 (975)
T ss_pred -----------------------------------------------CCchh----------------------------
Confidence 01100
Q ss_pred CCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHH
Q 000159 579 EAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658 (2013)
Q Consensus 579 ~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~q 658 (2013)
+++| . |. |-++..+.+
T Consensus 688 ---------------------~ilP-~------------------------------------lt------PILrnkh~K 703 (975)
T COG5181 688 ---------------------GILP-S------------------------------------LT------PILRNKHQK 703 (975)
T ss_pred ---------------------hccc-c------------------------------------cc------HhhhhhhHH
Confidence 0000 0 00 011222334
Q ss_pred HHHHHHHHHHHHHHHcCCC-c-hhhHHHHHHHHHhhhcC-hh-hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhH
Q 000159 659 VQQQVIEVINYLAATATKF-P-KKCVVLCLLGISERVAD-IK-TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKV 734 (2013)
Q Consensus 659 V~~~~Le~l~~l~~~~~~~-~-~~~~~~il~~LveKlgD-~K-~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv 734 (2013)
|....+.++..+..+.+.. + +.|+..| =.|+|-|.. .| +|..|.+++..|+++.||+-|+..|+..+. ...-..
T Consensus 704 v~~nti~lvg~I~~~~peyi~~rEWMRIc-feLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk-vqeRq~ 781 (975)
T COG5181 704 VVANTIALVGTICMNSPEYIGVREWMRIC-FELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK-VQERQQ 781 (975)
T ss_pred HhhhHHHHHHHHHhcCcccCCHHHHHHHH-HHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch-HHHHHh
Confidence 4444555555555544432 2 2233333 345555544 23 789999999999999999999999998872 222223
Q ss_pred HHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHh
Q 000159 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE 814 (2013)
Q Consensus 735 ~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~ 814 (2013)
|..+--.++-+.+-.|.- .+++.+..- ...++.+|.+...+.++-||.++|+.-.+|.-.
T Consensus 782 RvctsvaI~iVae~cgpf-----sVlP~lm~d-Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~-------------- 841 (975)
T COG5181 782 RVCTSVAISIVAEYCGPF-----SVLPTLMSD-YETPEANVQNGVLKAMCFMFEYIGQASLDYVYS-------------- 841 (975)
T ss_pred hhhhhhhhhhhHhhcCch-----hhHHHHHhc-ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 333333343333444442 345555443 678899999999999999999999876666533
Q ss_pred hCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CCh
Q 000159 815 KNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGT 893 (2013)
Q Consensus 815 k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~-~~~ 893 (2013)
|+|-+.+.+.|.+---|..|+.-+.-+.-.+. .... ..+
T Consensus 842 ---------------------------------------itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~-gtg~eda~ 881 (975)
T COG5181 842 ---------------------------------------ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP-GTGDEDAA 881 (975)
T ss_pred ---------------------------------------hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC-CcccHHHH
Confidence 34445555666777778888887777764321 1110 001
Q ss_pred hhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000159 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (2013)
Q Consensus 894 ~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~ 964 (2013)
-.|+..|-.-+-|...-|.+...+++..+++++|+. .++..+...|=.....||..-....+.+.
T Consensus 882 IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g------~~m~Yv~qGLFHPs~~VRk~ywtvyn~my 946 (975)
T COG5181 882 IHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG------AMMKYVQQGLFHPSSTVRKRYWTVYNIMY 946 (975)
T ss_pred HHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH------HHHHHHHHhccCchHHHHHHHHHHHhhhh
Confidence 234445544456777888889999999999999976 23344455556677778888766666554
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-05 Score=105.31 Aligned_cols=286 Identities=15% Similarity=0.185 Sum_probs=189.1
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC---CCcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCch
Q 000159 127 DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA---KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP 203 (2013)
Q Consensus 127 ~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~---~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~ 203 (2013)
..+.+.|..+..+-||..+.+..-||-..++.-|. .+...+.|+..+..+|++.|.=+.+.|..-++-+|- +|+.
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe-lgd~- 894 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE-LGDS- 894 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe-cCCc-
Confidence 35556667788899999999999999999998884 244568899999999999999999998777777774 3432
Q ss_pred hhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhH-hhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 000159 204 VKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDK-ELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDIL 282 (2013)
Q Consensus 204 l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~-~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl 282 (2013)
.+|..+.+.|-+.+.. |..+- .+.. +.+ -.+...-|..| +...+.-|
T Consensus 895 -------~~k~~LV~sL~~tl~~--Gkr~~------~~vs~eTe-lFq~G~Lg~Tp-------~Gg~isTY--------- 942 (1702)
T KOG0915|consen 895 -------SLKKSLVDSLVNTLTG--GKRKA------IKVSEETE-LFQEGTLGKTP-------DGGKISTY--------- 942 (1702)
T ss_pred -------hhHHHHHHHHHHHHhc--ccccc------ceeccchh-cccCCcCCCCC-------CCCcchHH---------
Confidence 2333334444333322 21110 0000 000 00000011111 11122222
Q ss_pred ccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcch
Q 000159 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS 361 (2013)
Q Consensus 283 ~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (2013)
++|..|++. +. -.+++--+...-+ .+-=+-...|+--++.|++.-+...+
T Consensus 943 ------------------------KELc~LASd--l~---qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~ 993 (1702)
T KOG0915|consen 943 ------------------------KELCNLASD--LG---QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLE 993 (1702)
T ss_pred ------------------------HHHHHHHhh--cC---ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhh
Confidence 233344321 00 1122222222222 11112234556666777777788889
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000159 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2013)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2013)
||.+.++|-|.-.=-|..+.|+++....-++++.-. .-.+.+|+++++.+|.+|-|+||+.++..|..+++..+..
T Consensus 994 p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~ 1073 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFD 1073 (1702)
T ss_pred hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChH
Confidence 999999999999889999999998888777776420 0125678889999999999999999999999999998877
Q ss_pred HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 438 ~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
.+.+.++.+-.++...++|-+..||+||-.+...+.++
T Consensus 1074 ~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1074 QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788899999999999999999999998877655544
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=116.85 Aligned_cols=182 Identities=18% Similarity=0.226 Sum_probs=158.8
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHH
Q 000159 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (2013)
-+..+.+.+|....++|..++.|.. ++......+++++-++.+-+++.|+.|...||.|++.|+..+.+.+......++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999874 777777788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHH
Q 000159 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYV 447 (2013)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~ 447 (2013)
-.|+.+-.+.|..||+++..||.+++.+ .++..+++.|..+++|.||.+|..++.-+.+|+....- .....+...++
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999987 78899999999999999999998877666676665531 12234567788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
+.+..-+.|.-|++|++|.-.+....
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~~~~~ 276 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVRLELK 276 (334)
T ss_pred HHHHhhhcccccccccchhHHHHhHH
Confidence 89999999999999999987665443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-06 Score=121.24 Aligned_cols=270 Identities=18% Similarity=0.131 Sum_probs=159.7
Q ss_pred HHHHhhhcC--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 000159 687 LGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764 (2013)
Q Consensus 687 ~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~ 764 (2013)
+.|++.|.| +.+|..|.+.|..+. +.-+++.|...+ .+.++.||..++..|..+.+.... .+.+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~ 690 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------APALR 690 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------hHHHH
Confidence 344444444 457777777766553 334556666554 778888888888887666432211 12233
Q ss_pred hcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCC
Q 000159 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844 (2013)
Q Consensus 765 ~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~ 844 (2013)
.. |++.++.||.+|+..|+.+...--..+...|.+-.+.+....-..+.++
T Consensus 691 ~~-L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~---------------------------- 741 (897)
T PRK13800 691 DH-LGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV---------------------------- 741 (897)
T ss_pred HH-hcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc----------------------------
Confidence 34 7778888888888888775411000111122222222111111111110
Q ss_pred CCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 000159 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS 924 (2013)
Q Consensus 845 lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~ 924 (2013)
. -.+.++..+.|.++.+|..+.+.|..+-.. . ...+..|...++|.+..|+..|+..|+.+.
T Consensus 742 -~-------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~-~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g- 803 (897)
T PRK13800 742 -D-------DVESVAGAATDENREVRIAVAKGLATLGAG--------G-APAGDAVRALTGDPDPLVRAAALAALAELG- 803 (897)
T ss_pred -c-------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------c-chhHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Confidence 0 012355667888888888888777655321 0 223556667778888888888887776552
Q ss_pred HhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccC
Q 000159 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (2013)
Q Consensus 925 alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~ 1004 (2013)
.. ..+.+.++..|.|....||.+|..+|..+ +....++.+...|.++ ++.+|.+++.-|...
T Consensus 804 ---~~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~---- 865 (897)
T PRK13800 804 ---CP-----PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW---- 865 (897)
T ss_pred ---Cc-----chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc----
Confidence 11 12345577788888888888888887643 3345567777888776 578888888777652
Q ss_pred CCCCChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000159 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2013)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~ 1037 (2013)
. ........+..+++|.+++||..|..+|.
T Consensus 866 ~---~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 P---GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred C---CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 11234455667788888888888887774
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.0001 Score=97.76 Aligned_cols=502 Identities=17% Similarity=0.186 Sum_probs=280.8
Q ss_pred hhhhccC--CHHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 291 WEGVKAT--KWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 291 ~~~l~s~--kWkeR~eaL~~L~~l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
.+.+++. +-.+|++++..|..+. .+.. ...++..+.+.+...+..+...+--.+..++. .=...+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~l~kli~~~~~G~~-----~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~----~~~~~~~l~ 80 (526)
T PF01602_consen 10 AKILNSFKIDISKKKEALKKLIYLMMLGYD-----ISFLFMEVIKLISSKDLELKRLGYLYLSLYLH----EDPELLILI 80 (526)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT----TSHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCC-----CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh----cchhHHHHH
Confidence 3344555 7788999999887754 3332 23344455556666666654444333333322 112347788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-H
Q 000159 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-Y 446 (2013)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l 446 (2013)
+..+.+-+.++++.+|..|-.++..+... .-.+.+++.|...+.|++|.||..++..+.+++...+. . ++. +
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~----~~~~~ 153 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-L----VEDEL 153 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-C----HHGGH
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-H----HHHHH
Confidence 99999999999999999888888876532 23456778888999999999999999999998876433 2 233 7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCC
Q 000159 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSV 526 (2013)
Q Consensus 447 ~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 526 (2013)
++.+.+++.|.++.|+.+|..++..+ +. .++....++..+- ..+...+... .| -.+
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~-~~~~~~~~~~~~~----~~L~~~l~~~-------~~--~~q--------- 209 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI-KC-NDDSYKSLIPKLI----RILCQLLSDP-------DP--WLQ--------- 209 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH-HC-THHHHTTHHHHHH----HHHHHHHTCC-------SH--HHH---------
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH-cc-CcchhhhhHHHHH----HHhhhccccc-------ch--HHH---------
Confidence 99999999999999999999999888 21 1111111222211 1222222100 00 000
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHH
Q 000159 527 EASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADT 606 (2013)
Q Consensus 527 ~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l 606 (2013)
-..-..+..- .....++... ..+-+.+
T Consensus 210 ---------~~il~~l~~~-----------------------------------------~~~~~~~~~~---~~~i~~l 236 (526)
T PF01602_consen 210 ---------IKILRLLRRY-----------------------------------------APMEPEDADK---NRIIEPL 236 (526)
T ss_dssp ---------HHHHHHHTTS-----------------------------------------TSSSHHHHHH---HHHHHHH
T ss_pred ---------HHHHHHHHhc-----------------------------------------ccCChhhhhH---HHHHHHH
Confidence 0000000000 0001111100 1122456
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHH
Q 000159 607 VGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCL 686 (2013)
Q Consensus 607 ~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il 686 (2013)
...+.+.++..+.+++.-+..+.....-.....+.+.+++. +++..+.-.+|+.+..++...+.... .. .+.
T Consensus 237 ~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~v~-~~-~~~ 308 (526)
T PF01602_consen 237 LNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPAVF-NQ-SLI 308 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHHHG-TH-HHH
T ss_pred HHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchhhh-hh-hhh
Confidence 67777888888888888777443222211122344555543 33344556677777766654311111 01 111
Q ss_pred HHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhc
Q 000159 687 LGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDT 766 (2013)
Q Consensus 687 ~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~ 766 (2013)
-..+..-.|.-+|..+.++|..++.......++..+.+.+....++.++.+++..+..+...|.. +...+++.+.++
T Consensus 309 ~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---~~~~~v~~l~~l 385 (526)
T PF01602_consen 309 LFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---DAEWYVDTLLKL 385 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS---SHHHHHHHHHHH
T ss_pred hheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc---hHHHHHHHHHHh
Confidence 11222223445777788888888877777777777777764444666777777777777777633 223344444443
Q ss_pred CCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCC
Q 000159 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (2013)
Q Consensus 767 gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lp 846 (2013)
+...+..|...++
T Consensus 386 -l~~~~~~~~~~~~------------------------------------------------------------------ 398 (526)
T PF01602_consen 386 -LEISGDYVSNEII------------------------------------------------------------------ 398 (526)
T ss_dssp -HHCTGGGCHCHHH------------------------------------------------------------------
T ss_pred -hhhccccccchHH------------------------------------------------------------------
Confidence 3333333333222
Q ss_pred CcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc-hhHHHHHHHHHHHHHHHHH
Q 000159 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASA 925 (2013)
Q Consensus 847 r~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D-sN~~V~~~Al~~l~~La~a 925 (2013)
..+..++.. .+.....++..|...+.+ ....+...++-++|+.+..
T Consensus 399 ----------------------------~~i~~ll~~-----~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~ 445 (526)
T PF01602_consen 399 ----------------------------NVIRDLLSN-----NPELREKILKKLIELLEDISSPEALAAAIWILGEYGEL 445 (526)
T ss_dssp ----------------------------HHHHHHHHH-----STTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHH
T ss_pred ----------------------------HHHHHHhhc-----ChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCc
Confidence 233333321 011112222223322222 2334566777777777666
Q ss_pred hChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000159 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (2013)
Q Consensus 926 lg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~----~ll~~l~~~L~~~k~~p~~R~~~l~~L~ 998 (2013)
... .. ....++..+.+.+.+....|+..+..++..+....+.. .+++.+......+..++++|..+..++.
T Consensus 446 ~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 446 IEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred ccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 544 11 56778888888999988999999999999999887633 4455555555411226888887777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.0011 Score=88.66 Aligned_cols=656 Identities=14% Similarity=0.154 Sum_probs=355.1
Q ss_pred CCC-CCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhc-ch-hhhHhHHHHHHHHhccCcHHHHHHHHHH
Q 000159 315 TKR-IAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQT 389 (2013)
Q Consensus 315 ~pk-i~~~~~~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~-f~-~~~~~llp~LL~klkdkk~~V~~aa~~a 389 (2013)
.|+ +.-..|+++...|...+. .+|-.|...++.||+.|-..-+.. +. +-....+-.++.-.-++++.||.++..+
T Consensus 82 VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~ 161 (1176)
T KOG1248|consen 82 VPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRG 161 (1176)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 454 333568888888888888 889999999999999988764422 32 3356677788888889999999999999
Q ss_pred HHHHHHhcCCChHhHHH-------HHHHHhhc-CChHHHHHHHHH---HHHHHHhcChhHHHHhhhhHHHHHHHHhcCCC
Q 000159 390 LQAMHKAGCLNLVDVVE-------DVKTSVKN-KVPLVRSLTLNW---VTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458 (2013)
Q Consensus 390 L~ai~~~~~~~l~~il~-------~l~~~l~~-Knp~vR~~~l~~---L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~ 458 (2013)
+.+++.+.|+.++..-| ..+.-+.. -++..-..++++ |...+..|+... ++.++..+..++.-++
T Consensus 162 i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~l----i~sl~e~lL~i~~~s~ 237 (1176)
T KOG1248|consen 162 IAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPL----IKSLCEVLLNITTESP 237 (1176)
T ss_pred HHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHH----HHHHHHHHHhhcccch
Confidence 99999863333222111 11222221 113333344444 344444555443 4888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccc
Q 000159 459 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538 (2013)
Q Consensus 459 ~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 538 (2013)
..|+-.+++||..+.+.-.. .|+...-.++-.++-..+ |+. ..+-. .-.=++.
T Consensus 238 v~v~~~~~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps~---------~D~~~-t~~W~~v-- 290 (1176)
T KOG1248|consen 238 VLVLLEVLQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PSE---------NDDLL-TVAWLKV-- 290 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CCc---------cchHH-HHHHHHH--
Confidence 99999999999887765443 122222222322222110 000 00000 0000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHH
Q 000159 539 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKER 618 (2013)
Q Consensus 539 ~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~R 618 (2013)
+..+ . ... ..+..|-+-..+..++ .-+.+ +..+.-+++
T Consensus 291 --~~~~----------------------~-------~~l---------a~~q~~~~~~~~~~~~-~~~~t-~~~s~~~e~ 328 (1176)
T KOG1248|consen 291 --LNEA----------------------H-------DIL---------ATLQEEKALQALPRLF-SLFFT-ILESLIEEL 328 (1176)
T ss_pred --HHHH----------------------H-------HHH---------HHhCHHHHHHhhhhhh-hHHHH-HHhcccHHH
Confidence 0000 0 000 0001111222222222 23344 555666666
Q ss_pred HHHHHHHHHHHHhccCc--chHHHH-HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC
Q 000159 619 LEAISSLRQQVEAVQNL--DQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD 695 (2013)
Q Consensus 619 l~ale~L~~~v~~~~~~--~~~~~~-lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD 695 (2013)
+++.......+-..... +..|.. +-.+|.. .-..|...+|+++..+.+.|+..+...+-.++..|.+.=++
T Consensus 329 ~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~------kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~ 402 (1176)
T KOG1248|consen 329 VQAASQSLKEILKESVTVIDALCSKQLHSLLDY------KFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRAS 402 (1176)
T ss_pred HHHHHHHHHHHhcccCcccHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcC
Confidence 66655544333222111 111222 2222221 12346677788888888888777666777788887774333
Q ss_pred --hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC-C--ChhhHHHHHHhc----
Q 000159 696 --IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH-L--KLKDLIDFCKDT---- 766 (2013)
Q Consensus 696 --~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~-l--~~k~li~~l~~~---- 766 (2013)
.-.+....+|+.+...+.||+.|+..+==.+ ++-.....=.||--++.++-... + -...++++...+
T Consensus 403 ~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl----~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~ 478 (1176)
T KOG1248|consen 403 PDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL----HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKA 478 (1176)
T ss_pred CCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc----cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 3345677888888888999998876552222 12222223346666666543211 1 012223322211
Q ss_pred -CCCCCcH---hHHHHHHHHH-----------------HHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCC-------
Q 000159 767 -GLQSSAA---ATRNATIKLL-----------------GALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF------- 818 (2013)
Q Consensus 767 -gL~~~n~---~VR~aA~~ll-----------------~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~------- 818 (2013)
++....- .+++..-++. ..++..+|..+.. =.++++.+...|..-.+.+..
T Consensus 479 ~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e~ 557 (1176)
T KOG1248|consen 479 KKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAAEN 557 (1176)
T ss_pred HhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHHHH
Confidence 0111111 1122222211 1112222221110 023444444444444443310
Q ss_pred -------------------CCCCCCcccc-----------c------Ccccc-----CCC---CCCCCCC----------
Q 000159 819 -------------------EGTVVPKKTV-----------R------ASEST-----SSV---SSGGSDG---------- 844 (2013)
Q Consensus 819 -------------------~~~p~p~R~~-----------r------~~~~~-----~s~---~~~~~d~---------- 844 (2013)
..+++..|.. + +..+. .+. .++.++.
T Consensus 558 ~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slL 637 (1176)
T KOG1248|consen 558 KEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLL 637 (1176)
T ss_pred HHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHH
Confidence 0011111000 0 00000 000 0000000
Q ss_pred ---------CCCcccccccchHHHHhcCC-CChHHHHHHHHHHHHHHHhc-cccCCCCChhhHHHHHHhcccchhHHHHH
Q 000159 845 ---------LPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (2013)
Q Consensus 845 ---------lpr~dIs~~L~~~ll~~l~d-~~Wk~R~eale~l~~il~~a-~~~I~~~~~~eL~~~L~~rL~DsN~~V~~ 913 (2013)
.+-..++... .+...... .+-++++.+.+-|..++... ..........+++..|..-++++....+.
T Consensus 638 dl~~~~a~~~~e~~vs~l~--~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~ 715 (1176)
T KOG1248|consen 638 DLLIALAPVQTESQVSKLF--TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQA 715 (1176)
T ss_pred HHHHhhhccccchhHHHHH--HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 0000111100 11122222 25677888888888887520 01111222467888888888999999999
Q ss_pred HHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHH--Hhc---C-------chhhHHHHHHHHh
Q 000159 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL--AAV---H-------LDKMVPYVTTALT 981 (2013)
Q Consensus 914 ~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~--~~~---g-------l~~ll~~l~~~L~ 981 (2013)
..|.++..|...++..+..+....+|-++=.+++.+..-|+.+.+||..++ ... | +..+++.|...+.
T Consensus 716 ~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 716 SRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc
Confidence 999999999999999988999999998888889999999999999999988 321 3 2345556666655
Q ss_pred cCCCChhhHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000159 982 DAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (2013)
Q Consensus 982 ~~k~~p~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~ 1058 (2013)
.+ ....+...+-.+...+.+... ..-+..++..+..+|...+++||++|...+..+...+++.-+.+++..|=|.
T Consensus 796 gd--~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 796 GD--STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred cc--HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 44 234444423333334433322 3345667777888999999999999999999999999998887776555443
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-05 Score=102.69 Aligned_cols=460 Identities=16% Similarity=0.160 Sum_probs=298.5
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH
Q 000159 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 369 (2013)
....+.+++-..|+=+.-.+..+.... ++-.--++..|.+=+.+.|..++..|+++++.++. ...++.++|
T Consensus 47 vi~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~ 117 (526)
T PF01602_consen 47 VIKLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIP 117 (526)
T ss_dssp HHCTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHH
Confidence 334457788888887766666665311 11123467788888889999999999999999872 345788999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHH
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~-il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p 448 (2013)
.+.+.+.++++.||..|..|+..++......+.. +++.+...+.+++|.|+..++..+..+ .+++......+..+..
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~ 195 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIR 195 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHH
Confidence 9999999999999999999999999872233455 789999999999999999999998887 3443332245677778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhH--HHHHhhccHHHH----HHHHHHHhcCCCCCCCCCCCccccCCCCC
Q 000159 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL--ERSIEKLDDVRR----NKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (2013)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~--~~~l~~Ld~~~~----kki~e~~~~~~~~~~~~~~~~~~~~~~~s 522 (2013)
.+.+.+.+.+|-++-...+++..+...-... . ..+++.+.+... .-+-+++.-
T Consensus 196 ~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~-~~~~~~i~~l~~~l~s~~~~V~~e~~~~-------------------- 254 (526)
T PF01602_consen 196 ILCQLLSDPDPWLQIKILRLLRRYAPMEPED-ADKNRIIEPLLNLLQSSSPSVVYEAIRL-------------------- 254 (526)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HhhhcccccchHHHHHHHHHHHhcccCChhh-hhHHHHHHHHHHHhhccccHHHHHHHHH--------------------
Confidence 8888889999998888777776544221111 1 122322222111 000111000
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccC
Q 000159 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (2013)
Q Consensus 523 ~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l 602 (2013)
... .. .+.+ + ...+
T Consensus 255 -------------------i~~--------------------------------l~----------~~~~-~----~~~~ 268 (526)
T PF01602_consen 255 -------------------IIK--------------------------------LS----------PSPE-L----LQKA 268 (526)
T ss_dssp -------------------HHH--------------------------------HS----------SSHH-H----HHHH
T ss_pred -------------------HHH--------------------------------hh----------cchH-H----HHhh
Confidence 000 00 0111 1 1112
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhh
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 681 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~-~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~ 681 (2013)
-..+...|.++++..|.-+++.|..+.... .... .....+..+. .|.+..|...+++++..++.. ..
T Consensus 269 ~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n 336 (526)
T PF01602_consen 269 INPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SN 336 (526)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HH
T ss_pred HHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cc
Confidence 356778889999999999999998887664 2221 2233333332 356677899999999888763 35
Q ss_pred HHHHHHHHHhhhc---ChhhhHHHHHHHHHHHhhhCh--hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCCh
Q 000159 682 VVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGP--GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL 756 (2013)
Q Consensus 682 ~~~il~~LveKlg---D~K~r~~a~e~L~~l~e~~~~--~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~ 756 (2013)
+..++..+..-+. |...+..+...+..+++.+.+ ++.++.+++.+ ...+..+..+++..+..++...... -
T Consensus 337 ~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~ 412 (526)
T PF01602_consen 337 VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---R 412 (526)
T ss_dssp HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---H
T ss_pred hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---h
Confidence 6667777777663 556888999999999998754 57888888876 5667788899999999999775432 1
Q ss_pred hhHHHHHHhcCCC-CCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccC
Q 000159 757 KDLIDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (2013)
Q Consensus 757 k~li~~l~~~gL~-~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~ 835 (2013)
..++..+... +. -.++.++.+++.++|+....... .+ ..+.++..+-
T Consensus 413 ~~~l~~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~-----~~-~~~~~~~~l~------------------------- 460 (526)
T PF01602_consen 413 EKILKKLIEL-LEDISSPEALAAAIWILGEYGELIEN-----TE-SAPDILRSLI------------------------- 460 (526)
T ss_dssp HHHHHHHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT-----TT-HHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHhhhcccCCcccc-----cc-cHHHHHHHHH-------------------------
Confidence 2334444333 44 36788999999999987655543 00 1122222222
Q ss_pred CCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhccc--chhHHHH
Q 000159 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLY--DSNKNLV 912 (2013)
Q Consensus 836 s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~-~~~~eL~~~L~~rL~--DsN~~V~ 912 (2013)
+...+..-.+|...+..+.++... ... ....++...+..... +.|..|+
T Consensus 461 ------------------------~~~~~~~~~vk~~ilt~~~Kl~~~----~~~~~~~~~i~~~~~~~~~~~s~~~evr 512 (526)
T PF01602_consen 461 ------------------------ENFIEESPEVKLQILTALAKLFKR----NPENEVQNEILQFLLSLATEDSSDPEVR 512 (526)
T ss_dssp ------------------------HHHTTSHHHHHHHHHHHHHHHHHH----SCSTTHHHHHHHHHHCHHHHS-SSHHHH
T ss_pred ------------------------HhhccccHHHHHHHHHHHHHHHhh----CCchhhHHHHHHHHHHHhccCCCCHHHH
Confidence 222333345677788888887752 222 122467777777776 6799999
Q ss_pred HHHHHHHHHHH
Q 000159 913 MATLITLGAVA 923 (2013)
Q Consensus 913 ~~Al~~l~~La 923 (2013)
+.|...+..+-
T Consensus 513 ~Ra~~y~~ll~ 523 (526)
T PF01602_consen 513 DRAREYLRLLN 523 (526)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99998887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-06 Score=118.59 Aligned_cols=242 Identities=20% Similarity=0.199 Sum_probs=170.0
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhC--hhHH
Q 000159 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (2013)
Q Consensus 718 Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G--~~l~ 795 (2013)
.++.|+..+ .+.+|.||..++.+|... |. ...++.+..+ |.|.++.||.+|...|+.+-.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 456666665 799999999999998764 32 3466777777 999999999999999987743222 1223
Q ss_pred hhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHH
Q 000159 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (2013)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale 875 (2013)
..|.+-.|.+....-..+..+.. . -+..|+..+.|+++.+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~---------------------------------~-~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRA---------------------------------G-DAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcc---------------------------------C-CHHHHHHHhcCCCHHHHHHHHH
Confidence 33333223222222222221100 0 0235677899999999999999
Q ss_pred HHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHH
Q 000159 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (2013)
Q Consensus 876 ~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~a 955 (2013)
.|..+- . ...|...+.|.+..|+..++..|+.+...- ...++.++..++|.++.||.+
T Consensus 737 aL~~~~--------~------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD--------D------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc--------C------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHH
Confidence 887531 1 134567799999999999999888765321 122677889999999999999
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHH
Q 000159 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (2013)
Q Consensus 956 a~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~ 1035 (2013)
|..+|..+.. ...+.+.+..+|.++ ++.+|..++..|... + ....+.+|..+|.|.+.+||.+|..+
T Consensus 795 A~~aLg~~g~---~~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l----~----~~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGC---PPDDVAAATAALRAS--AWQVRQGAARALAGA----A----ADVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCC---cchhHHHHHHHhcCC--ChHHHHHHHHHHHhc----c----ccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999977632 233456688889876 589999999888642 1 13455779999999999999999999
Q ss_pred HHHH
Q 000159 1036 IVEI 1039 (2013)
Q Consensus 1036 L~~l 1039 (2013)
|..+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9875
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-06 Score=101.79 Aligned_cols=147 Identities=12% Similarity=0.063 Sum_probs=107.5
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (2013)
..+...+.|++|.+|..++..|..+ . + .+.+..|...|+|.+..|+..|+..++.+. ...+
T Consensus 131 ~~l~~~~~D~~~~VR~~a~~aLg~~--------~--~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~--------~~~~ 191 (280)
T PRK09687 131 EQSQITAFDKSTNVRFAVAFALSVI--------N--D-EAAIPLLINLLKDPNGDVRNWAAFALNSNK--------YDNP 191 (280)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHhcc--------C--C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------CCCH
Confidence 3455667888999999988887532 1 1 567888888888999999998888888761 1134
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHH
Q 000159 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2013)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2013)
..++.|+..|.|.+..||..|..+|.. ++-...+|.|...|+++ .+|..++.-|.+ ++. ...++
T Consensus 192 ~~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~~----~~~~~a~~ALg~----ig~----~~a~p 255 (280)
T PRK09687 192 DIREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKKG----TVGDLIIEAAGE----LGD----KTLLP 255 (280)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcCC----chHHHHHHHHHh----cCC----HhHHH
Confidence 677888889999999999998888866 35567888888888865 256665555543 222 45666
Q ss_pred HHHhhcC-CCChHHHHHHHHHHH
Q 000159 1016 PASIAMT-DKSSDVRKAAEACIV 1037 (2013)
Q Consensus 1016 pl~~~L~-D~~~dVR~aA~~~L~ 1037 (2013)
.+...++ +.++.||..|.+++.
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHh
Confidence 6777774 888899988887764
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6e-05 Score=99.73 Aligned_cols=371 Identities=16% Similarity=0.104 Sum_probs=243.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhChh-----HHHHHHHHH
Q 000159 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG-----FIFERLYKI 725 (2013)
Q Consensus 653 ~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~~~-----~Vl~~L~~~ 725 (2013)
.|.+..|...+-+-+..++...++ ......+++.++.-.-|. -+|..|.+.+..+.+.+..+ .+.+.++..
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~ 324 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQA 324 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH
Confidence 455555655555544444443222 223445566666666664 48999999999999987766 455555554
Q ss_pred hhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHH--hhhhhccH
Q 000159 726 MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK--GFLADVKP 803 (2013)
Q Consensus 726 l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~--~~L~~lkp 803 (2013)
.+.++++++.-...+...+...||.+.-. ..+....... +++...++|.++..-...+..+...+-. ...+.+-|
T Consensus 325 -~~d~~~~v~~~~~~~~~~L~~~~~~~~~~-~~~~~~~~~l-~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp 401 (759)
T KOG0211|consen 325 -VEDGSWRVSYMVADKFSELSSAVGPSATR-TQLVPPVSNL-LKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILP 401 (759)
T ss_pred -hcChhHHHHHHHhhhhhhHHHHhccccCc-ccchhhHHHH-hcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhH
Confidence 37899999999999999999999984322 2333334444 7888889999998888877776653211 11233345
Q ss_pred HHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHh
Q 000159 804 ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE 883 (2013)
Q Consensus 804 ~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~ 883 (2013)
.++..+.+.-..+. +... +...+....+|...-...+.+.++..+.|..-.+|....+.+..+..
T Consensus 402 ~~~~lv~d~~~~vr------------~a~a--~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~- 466 (759)
T KOG0211|consen 402 EVQVLVLDNALHVR------------SALA--SVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE- 466 (759)
T ss_pred HHHHHHhcccchHH------------HHHh--ccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHh-
Confidence 54444443222111 1000 00011122333333344466778888999999999998876644432
Q ss_pred ccccCCCCC-hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000159 884 ANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (2013)
Q Consensus 884 a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~ 962 (2013)
.+.-+.... -..+++++...-.|.++.++...+..+..++.-.|..|-. ..+.+.+..-+-|....+|.+|...+..
T Consensus 467 v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~--~~~~~l~~~~l~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 467 VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD--EKLAELLRTWLPDHVYSIREAAARNLPA 544 (759)
T ss_pred ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh--HHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence 222222221 2457788888889999999999999999999999855432 2356666777889999999999999999
Q ss_pred HHHhcCc----hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHH
Q 000159 963 WLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1038 (2013)
Q Consensus 963 i~~~~gl----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~ 1038 (2013)
++...|. ..+++.+.....+. +--.|..++.-+.....-.+..-....+++++.....|..++||-.+.+.|..
T Consensus 545 l~~~~G~~w~~~~~i~k~L~~~~q~--~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 545 LVETFGSEWARLEEIPKLLAMDLQD--NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPK 622 (759)
T ss_pred HHHHhCcchhHHHhhHHHHHHhcCc--ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence 9999993 33445455554444 34678888877775555454433345677778888999999999999999998
Q ss_pred HHHHcChhH
Q 000159 1039 ILRAGGQET 1047 (2013)
Q Consensus 1039 l~~~~G~~~ 1047 (2013)
++..+-...
T Consensus 623 i~~~L~~~~ 631 (759)
T KOG0211|consen 623 ILKLLDESV 631 (759)
T ss_pred HHhhcchHH
Confidence 887776643
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0011 Score=81.63 Aligned_cols=467 Identities=14% Similarity=0.156 Sum_probs=264.9
Q ss_pred HHhcccCHHHHHHHHHHHHHHHH-----Hhh-----------hcchh-hhHhHHHHHHHHhccCcH-------HHHHHHH
Q 000159 332 KLITDVNIAVAVEAIQAIGNLAR-----GLR-----------THFSG-SSRFLLPVLLEKLKEKKP-------TVAESLT 387 (2013)
Q Consensus 332 k~l~D~N~~V~~~A~~~l~~La~-----~L~-----------~~f~~-~~~~llp~LL~klkdkk~-------~V~~aa~ 387 (2013)
..++..|-.|...|...-..++. .+- ..|.. -+..++|.||+.+-...+ ++.-++.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 34557888887777665544443 111 22432 255699999998844222 4777888
Q ss_pred HHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHH
Q 000159 388 QTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (2013)
Q Consensus 388 ~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 466 (2013)
.||.-+... +-.=+..++..+-..+++.+|.-|..+.-.+...+..-....+.+++++.+|.+...++|+.--|.+.+.
T Consensus 350 sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttA 429 (858)
T COG5215 350 SCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTA 429 (858)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHH
Confidence 898877766 1111344666666778899999999999899988877666777788999999999999999999999999
Q ss_pred HHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCC
Q 000159 467 SVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR 546 (2013)
Q Consensus 467 ~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~ 546 (2013)
.||+.+..++.+- ++|-. .|.+...+.+....+.
T Consensus 430 wc~g~iad~va~~-i~p~~-Hl~~~vsa~liGl~D~-------------------------------------------- 463 (858)
T COG5215 430 WCFGAIADHVAMI-ISPCG-HLVLEVSASLIGLMDC-------------------------------------------- 463 (858)
T ss_pred HHHHHHHHHHHHh-cCccc-cccHHHHHHHhhhhcc--------------------------------------------
Confidence 9999998887753 22211 1111111111000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHH
Q 000159 547 PVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLR 626 (2013)
Q Consensus 547 P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~ 626 (2013)
|- .........+.+...+ ++ +.++.
T Consensus 464 p~----------------------------------~~~ncsw~~~nlv~h~----a~----------------a~~~~- 488 (858)
T COG5215 464 PF----------------------------------RSINCSWRKENLVDHI----AK----------------AVREV- 488 (858)
T ss_pred ch----------------------------------HHhhhHHHHHhHHHhh----hh----------------hhccc-
Confidence 00 0000000001000000 00 00000
Q ss_pred HHHHhccCcchHHHHHHHHHhcCC--CCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHH
Q 000159 627 QQVEAVQNLDQSVEILVRLVCMLP--GWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMK 704 (2013)
Q Consensus 627 ~~v~~~~~~~~~~~~lv~~L~~~p--gl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e 704 (2013)
..........|+..|.+.- -.+|+|. ....+++|..++..+++-.......+...+.+|++.
T Consensus 489 -----~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~--R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~--------- 552 (858)
T COG5215 489 -----ESFLAKFYLAILNALVKGTELALNESNL--RVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDE--------- 552 (858)
T ss_pred -----cchhHHHHHHHHHHHHHHHHhhccchhH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH---------
Confidence 0001111233333332211 1456665 456788888888876553223333344444444433
Q ss_pred HHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhh-HHHHHHhcCCCCCcHhH-HHHHHHH
Q 000159 705 CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-LIDFCKDTGLQSSAAAT-RNATIKL 782 (2013)
Q Consensus 705 ~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~-li~~l~~~gL~~~n~~V-R~aA~~l 782 (2013)
++......+..+- + .-.-.++..-+..|..+|..++.+.-++.+ ++.++... ++.+++.+ -.-....
T Consensus 553 ~isv~~q~l~~eD---~-------~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~-les~~~t~~~~dV~~a 621 (858)
T COG5215 553 CISVLGQILATED---Q-------LLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRI-LESTKPTTAFGDVYTA 621 (858)
T ss_pred HHHHhhhhhhhHH---H-------HHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-HhccCCchhhhHHHHH
Confidence 2222221111110 0 011234556678888899999986555555 77777666 77776543 2223333
Q ss_pred HHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhc
Q 000159 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 862 (2013)
Q Consensus 783 l~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l 862 (2013)
++.|...+|..+..|+..+.|-+ .+.+
T Consensus 622 Isal~~sl~e~Fe~y~~~fiPyl-----------------------------------------------------~~al 648 (858)
T COG5215 622 ISALSTSLEERFEQYASKFIPYL-----------------------------------------------------TRAL 648 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-----------------------------------------------------HHHh
Confidence 33344344444444443333333 3333
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch--hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHH
Q 000159 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2013)
Q Consensus 863 ~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (2013)
...+..+-..++-.+..+.+.-+..+.+.- ..++..|.+.|+.+ ...+.-..|.+++.||.++|.+|.+|+..++..
T Consensus 649 n~~d~~v~~~avglvgdlantl~~df~~y~-d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L 727 (858)
T COG5215 649 NCTDRFVLNSAVGLVGDLANTLGTDFNIYA-DVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMML 727 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334444455566677777664444454442 56788888888654 456778889999999999999999999888766
Q ss_pred HHHHhC-----------CCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHH
Q 000159 941 ILKCLG-----------DNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTAL 980 (2013)
Q Consensus 941 ll~~L~-----------D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L 980 (2013)
+...-. |=...+++....+...+..... ++.++|++....
T Consensus 728 ~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif 780 (858)
T COG5215 728 FQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIF 780 (858)
T ss_pred HHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHH
Confidence 554332 1112456666666666666665 677888655443
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.013 Score=79.03 Aligned_cols=754 Identities=13% Similarity=0.089 Sum_probs=385.0
Q ss_pred hHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCc
Q 000159 128 VFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD 202 (2013)
Q Consensus 128 ~v~~~L~~~~~--~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~ 202 (2013)
.....|.+.+. +.|-.++-.++.||..+|+..+.+. .+.+..+-.+..+.-|..+.||.+|...+..+.. |+.
T Consensus 93 ~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~--~p~ 170 (1176)
T KOG1248|consen 93 DTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLK--GPP 170 (1176)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHc--CCC
Confidence 34555555555 8899999999999999998877643 4567888889999999999999999998877764 221
Q ss_pred hhhHHHhhhChHH---HHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 000159 203 PVKTILFEKMRDT---MKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279 (2013)
Q Consensus 203 ~l~~~l~~~Lk~~---q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~v 279 (2013)
+-. ...-|+ ..++..+.+++.-++..-+-.+|+-.--+ |.+.-.+ .
T Consensus 171 -~~~---~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~--------------------------~~~~~~p-~ 219 (1176)
T KOG1248|consen 171 -FAP---DAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLR--------------------------DVLSTFP-R 219 (1176)
T ss_pred -CCc---cccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH--------------------------HhhccCC-H
Confidence 100 111222 12344444544322111111111110000 0010001 1
Q ss_pred cccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCC-CCCCChHHHHHHHHHHhcccCHHHHHHH-HHHHHHHHHHh
Q 000159 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKR-IAPGDFTEVCRTLKKLITDVNIAVAVEA-IQAIGNLARGL 356 (2013)
Q Consensus 280 dIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pk-i~~~~~~~l~~~L~k~l~D~N~~V~~~A-~~~l~~La~~L 356 (2013)
..+..+. +.+..-.....--.+.++++.+..+.+ .+. +...-+..++.+|.+.--+.|-.....+ ++++...-..+
T Consensus 220 ~li~sl~-e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~l 298 (1176)
T KOG1248|consen 220 PLIKSLC-EVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDIL 298 (1176)
T ss_pred HHHHHHH-HHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHH
Confidence 1122333 344445566777788899999988773 333 2223345566666555433332222222 22222211111
Q ss_pred ---hhc-chhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH-hHHHH-HHHHhhcCChHHHHHHHHHHHHH
Q 000159 357 ---RTH-FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-DVVED-VKTSVKNKVPLVRSLTLNWVTFC 430 (2013)
Q Consensus 357 ---~~~-f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~-~il~~-l~~~l~~Knp~vR~~~l~~L~~~ 430 (2013)
..+ --.....+++.++..+-.....+.+++.+++..+... |+++. .+-.. +...|.-|-..+=..+++.+..+
T Consensus 299 a~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~-sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~ 377 (1176)
T KOG1248|consen 299 ATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKE-SVTVIDALCSKQLHSLLDYKFHAVWRFILQILSAL 377 (1176)
T ss_pred HHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcc-cCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 111 1245667788888877788889999999999999987 66622 22222 33455667777778889999998
Q ss_pred HHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCC
Q 000159 431 IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATG 510 (2013)
Q Consensus 431 l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~ 510 (2013)
++.+++-.- +.+-..+..+...=.+.+-.-+..=-+|+|...+.+|.+.+-..++ |+- .....
T Consensus 378 fek~G~~s~-~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lp---------Lnl---~~~s~---- 440 (1176)
T KOG1248|consen 378 FEKCGELSG-PELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILP---------LNL---HAESL---- 440 (1176)
T ss_pred HHHhhhhcC-HHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcc---------hhc---ccccc----
Confidence 888875321 2222222223322223333344466778888888888654332221 000 00000
Q ss_pred CCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCC
Q 000159 511 TSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS 590 (2013)
Q Consensus 511 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S 590 (2013)
. .+ + +..=|.- +-. . . ...++
T Consensus 441 ------~------------~~----R------sWLLPvL-----------R~~-----i--------~-------~A~La 461 (1176)
T KOG1248|consen 441 ------S------------FT----R------SWLLPVL-----------RDY-----I--------I-------GASLA 461 (1176)
T ss_pred ------c------------cc----h------hHhHHHH-----------HHh-----h--------c-------cCcHH
Confidence 0 00 0 0000000 000 0 0 00000
Q ss_pred --HHHHHHHhhccCcHHHHhhhcCCCHHHHHH-----HHHHHHH----HHHhccC--cc--hH----HHHHHHHHhcCCC
Q 000159 591 --LEEIESRLGSLIPADTVGQLKSAVWKERLE-----AISSLRQ----QVEAVQN--LD--QS----VEILVRLVCMLPG 651 (2013)
Q Consensus 591 --~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~-----ale~L~~----~v~~~~~--~~--~~----~~~lv~~L~~~pg 651 (2013)
.+.+-. +...|.++.-+...+ -++.|.. .+.++.+ .+ .. ...+...+.+.
T Consensus 462 ~F~~~ivp---------la~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-- 530 (1176)
T KOG1248|consen 462 FFTEYIVP---------LAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-- 530 (1176)
T ss_pred HHHHHHHH---------HHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc--
Confidence 011111 111222111111111 1111111 1111111 11 00 11111121111
Q ss_pred CcccHHHHHHHHHHHHHHHHHHcC---------CCchhhHHHHHHHHHhhhcCh-----h---hhHHHHHHHH-HHHhhh
Q 000159 652 WSEKNVQVQQQVIEVINYLAATAT---------KFPKKCVVLCLLGISERVADI-----K---TRAHAMKCLT-TFSEAV 713 (2013)
Q Consensus 652 l~DsN~qV~~~~Le~l~~l~~~~~---------~~~~~~~~~il~~LveKlgD~-----K---~r~~a~e~L~-~l~e~~ 713 (2013)
.-.....+..|..+++.+. .+..+.+...+|.++..-+.. + .+....+... .+.+..
T Consensus 531 -----~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t 605 (1176)
T KOG1248|consen 531 -----PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVT 605 (1176)
T ss_pred -----hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcc
Confidence 1223345556666666541 122334556677777654432 1 1222222222 233333
Q ss_pred ChhHHHHHHHHHhh----h---CCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHH
Q 000159 714 GPGFIFERLYKIMK----D---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (2013)
Q Consensus 714 ~~~~Vl~~L~~~l~----~---~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~L 786 (2013)
+. -|...+...+. . .+.+......|+.+..+..-... -++..+....... ..++++.|+.-+..+|.++
T Consensus 606 ~~-dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e--~~vs~l~~v~~~~-e~~~~~~vQkK~yrlL~~l 681 (1176)
T KOG1248|consen 606 PT-DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTE--SQVSKLFTVDPEF-ENSSSTKVQKKAYRLLEEL 681 (1176)
T ss_pred cH-HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccc--hhHHHHHHhhHHh-hccccHHHHHHHHHHHHHH
Confidence 32 23333333321 1 12233333333333333321111 1233333444444 5566889999999999888
Q ss_pred HHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCC
Q 000159 787 HKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPD 866 (2013)
Q Consensus 787 y~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~ 866 (2013)
... +....+..+....+.+.+-+-|+ +..
T Consensus 682 ~~~--~s~~~~~~q~i~~I~n~L~ds~q-------------------------------------------------s~~ 710 (1176)
T KOG1248|consen 682 SSS--PSGEGLVEQRIDDIFNSLLDSFQ-------------------------------------------------SSS 710 (1176)
T ss_pred hcC--CchhhHHHHHHHHHHHHHHHHHh-------------------------------------------------ccc
Confidence 765 22222222222223333333222 222
Q ss_pred hHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHH--HH---hChhh-HhhhhhHHHH
Q 000159 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVA--SA---MGPAV-EKSSKGVLSD 940 (2013)
Q Consensus 867 Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La--~a---lg~~~-~~~~~~llp~ 940 (2013)
--.|...+..|..|+...+.....-....|..++... +|-|..-++.|..+|-.|+ .. .|.+= ...+..+++.
T Consensus 711 ~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~ 789 (1176)
T KOG1248|consen 711 SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSI 789 (1176)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHH
Confidence 2234555666666665322111111112233333333 8888888888888888887 22 22221 2356667777
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC---CCCh
Q 000159 941 ILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDA 1010 (2013)
Q Consensus 941 ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~~~~ 1010 (2013)
|...+......++.+-+-++..++...+ +..+++.+.-.|.+. +++++..+++++..++...+. .+..
T Consensus 790 Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~ 867 (1176)
T KOG1248|consen 790 ISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHL 867 (1176)
T ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhH
Confidence 7777777777777766788887776532 455666777777765 589999999999988887765 3455
Q ss_pred hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhc
Q 000159 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (2013)
Q Consensus 1011 ~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~ 1070 (2013)
..+++.++..+.|....+|.+....|..+.+.+|.+.+..++. .....+...|.+.
T Consensus 868 ~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p----ee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 868 EELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP----EEDMKLLTNIRKR 923 (1176)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH----HHHHHHHHHHHHH
Confidence 5666668888899999999999999999999999999888764 4444555555443
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0015 Score=87.86 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=64.0
Q ss_pred HHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000159 372 LEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (2013)
Q Consensus 372 L~klkdkk~~-V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (2013)
-+.|...+.. .+++....+..+.. | .....++++++..+.+++..+|+-+..++..+....+.. .-..+..+
T Consensus 38 r~~L~s~~~~~kk~alKkvIa~mt~-G-~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-----alLaINtl 110 (746)
T PTZ00429 38 QNDLNGTDSYRKKAAVKRIIANMTM-G-RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-----ALLAVNTF 110 (746)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHC-C-CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-----HHHHHHHH
Confidence 3334343333 34444444444433 2 456788999999999999999999988888765533321 23457888
Q ss_pred HHHhcCCCHHHHHHHHHHHHH
Q 000159 451 MECLNDGTPEVRDAAFSVLAA 471 (2013)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~al~~ 471 (2013)
.+-+.|++|-||--|.++|+.
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~ 131 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMC 131 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHc
Confidence 999999999999999988854
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-06 Score=98.31 Aligned_cols=180 Identities=17% Similarity=0.248 Sum_probs=147.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
..+..|++++|....+|+..+..+.. .++..-...+++++-++.+-++..+..|...||-+++.|++.++..+.+.+..
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~-fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSE-FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999998876 34444444568888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC----CChhh
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAH 1012 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~----~~~~~ 1012 (2013)
++..|+..-.+.|..||+.|..+|++++.++....+++.+..++++. ++..|...+.-.......++.. ....+
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~--n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHS--NPRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh--chhhhhhhhccccccceeccccchhhHhHHH
Confidence 99999999999999999999999999999999999999999999876 5777766554444444433321 12334
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000159 1013 LLKPASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 1013 ll~pl~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
++..+-.-+.|+-+.+|++|...+...
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~~ 275 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLEL 275 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHhH
Confidence 455566678999999999998666543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00044 Score=92.84 Aligned_cols=358 Identities=12% Similarity=0.120 Sum_probs=228.6
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHH
Q 000159 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (2013)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~ 684 (2013)
++.+.|.+.+-..|.+|+..+...+..+.+.......+++. +.-.|..+...+.-.+..+++. ....+-.
T Consensus 36 ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~------~~S~d~elKKLvYLYL~~ya~~----~pelalL 105 (746)
T PTZ00429 36 ELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKL------APSTDLELKKLVYLYVLSTARL----QPEKALL 105 (746)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHH------hCCCCHHHHHHHHHHHHHHccc----ChHHHHH
Confidence 45677788888899999999988876654443333334443 2344666666666555555442 2334556
Q ss_pred HHHHHHhhhcC--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHH
Q 000159 685 CLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF 762 (2013)
Q Consensus 685 il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~ 762 (2013)
++..+..-+.| +-+|..|..+|..+....-.++++..+.+.+ .+++|-||..++.++.++....+. .+....+++.
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~pe-lv~~~~~~~~ 183 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDMQ-LFYQQDFKKD 183 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCcc-cccccchHHH
Confidence 67777766666 3578888777776655444455666666665 789999999999999998765442 2333457778
Q ss_pred HHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCC
Q 000159 763 CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (2013)
Q Consensus 763 l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~ 842 (2013)
+.++ +.+.|+.|..+|+.+|.++...-+..+. -..+.+.
T Consensus 184 L~~L-L~D~dp~Vv~nAl~aL~eI~~~~~~~l~----l~~~~~~------------------------------------ 222 (746)
T PTZ00429 184 LVEL-LNDNNPVVASNAAAIVCEVNDYGSEKIE----SSNEWVN------------------------------------ 222 (746)
T ss_pred HHHH-hcCCCccHHHHHHHHHHHHHHhCchhhH----HHHHHHH------------------------------------
Confidence 8888 9999999999999999888654332211 0111111
Q ss_pred CCCCCcccccccchHHHHhcCC-CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHH
Q 000159 843 DGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 921 (2013)
Q Consensus 843 d~lpr~dIs~~L~~~ll~~l~d-~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~ 921 (2013)
.++..+.+ ..|- +. .+-+++....+ -......+++..+..+|.-+|..|+..|++++-.
T Consensus 223 --------------~Ll~~L~e~~EW~-Qi----~IL~lL~~y~P-~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~ 282 (746)
T PTZ00429 223 --------------RLVYHLPECNEWG-QL----YILELLAAQRP-SDKESAETLLTRVLPRMSHQNPAVVMGAIKVVAN 282 (746)
T ss_pred --------------HHHHHhhcCChHH-HH----HHHHHHHhcCC-CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 12222222 1342 11 12222221111 0111235678888888988999999999999888
Q ss_pred HHHHhChhh-HhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHH---HhcCCCChhhHHHHHHHH
Q 000159 922 VASAMGPAV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA---LTDAKLGAEGRKDLFDWL 997 (2013)
Q Consensus 922 La~alg~~~-~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~---L~~~k~~p~~R~~~l~~L 997 (2013)
+...+.+.. ......+.++++.. ..+.+.++-.+...|..++.... ..+.+.+-.. ..++ ..+|...+..|
T Consensus 283 l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~Ff~~~~Dp---~yIK~~KLeIL 357 (746)
T PTZ00429 283 LASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDSFYVRYSDP---PFVKLEKLRLL 357 (746)
T ss_pred hcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHhhhcccCCc---HHHHHHHHHHH
Confidence 876554332 33444455666655 45778899999999988887653 2233332222 2233 45788888888
Q ss_pred HHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 998 SKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 998 ~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
..... ...+..++.-+.....|.+.++|..+..+++.+...+.
T Consensus 358 ~~Lan----e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 358 LKLVT----PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred HHHcC----cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh
Confidence 76543 33567778888888899999999999999998876654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.1e-05 Score=93.18 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=117.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 941 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~l 941 (2013)
+.|++|.+|..|+..|+.+... ...+ ...++..|...+.|.+..|+..++..++.+. ....++.|
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~~---~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L 164 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCKK---NPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLL 164 (280)
T ss_pred hcCCCHHHHHHHHHHHhccccc---cccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHH
Confidence 5888999999999999876431 1111 2456777888899999999999988886442 13578999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc
Q 000159 942 LKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (2013)
Q Consensus 942 l~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (2013)
+..|.|....||..|..+|+.+ ..+-...++.+...|.+. ++.+|.+++..|.+. .....+++|+..|
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~--------~~~~av~~Li~~L 232 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALR--------KDKRVLSVLIKEL 232 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHcc--------CChhHHHHHHHHH
Confidence 9999999999999999999988 334457888899999877 689999999988752 1256788899999
Q ss_pred CCCChHHHHHHHHHHHHH
Q 000159 1022 TDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 1022 ~D~~~dVR~aA~~~L~~l 1039 (2013)
+|.+ ||..|..+|+.+
T Consensus 233 ~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 233 KKGT--VGDLIIEAAGEL 248 (280)
T ss_pred cCCc--hHHHHHHHHHhc
Confidence 9865 888888777764
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.017 Score=74.47 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=73.8
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH-HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000159 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~i-l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2013)
+..++|.+.+....++..|..-+.-=|...... -..+..+ +..+-.+|++.|+-+|..++..|..+ . +.-.
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe-qpdLALLSIntfQk~L~DpN~LiRasALRvlSsI----R---vp~I 140 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE-QPDLALLSINTFQKALKDPNQLIRASALRVLSSI----R---VPMI 140 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-CCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhc----c---hhhH
Confidence 566788888888888888877665555444443 1111111 35566789999999999998887653 1 1223
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
.+.++-++.+|..|..+-||..|+-|+..++..
T Consensus 141 aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 141 APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 466777889999999999999999999877654
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.27 Score=66.24 Aligned_cols=595 Identities=15% Similarity=0.116 Sum_probs=302.8
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhc---CCC
Q 000159 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAG---CLN 400 (2013)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~ai~~~~---~~~ 400 (2013)
.++..|...+.|....|+..|++-++.++..+... .+..++..+++.|..-. ...--.+.-+|..+...| ...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 34556666778999999999999999999988743 45667777777554433 333344445555555442 233
Q ss_pred hHhHHHHHHHHhh--------cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH-HHHhcCCCHHHHHHHHHHHHH
Q 000159 401 LVDVVEDVKTSVK--------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAA 471 (2013)
Q Consensus 401 l~~il~~l~~~l~--------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l-~k~l~Ds~~~VR~aA~~al~~ 471 (2013)
+++|+|.|..++. ..--.||-.++=++-.+.....+..+.+++..+.+.+ ..++-|..-++|.||..||-.
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 5688888887773 2335788888777766666666666666666666655 567899999999999999876
Q ss_pred HHHHhCchhH-HHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCC
Q 000159 472 IAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550 (2013)
Q Consensus 472 l~~~~Ge~~~-~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~ 550 (2013)
.....|+-+. ..++...|-..-.....++.
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~------------------------------------------------- 528 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYL------------------------------------------------- 528 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHH-------------------------------------------------
Confidence 6555554310 11222212110000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 000159 551 APASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 630 (2013)
Q Consensus 551 ~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~ 630 (2013)
+ -..+.++.+.....++.+.+..++.|=+-+.|..|...|.++..
T Consensus 529 --------------------------------~---l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 529 --------------------------------D---LCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred --------------------------------H---HhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 0 00011222222334444555666888888899999998887543
Q ss_pred h-ccCcchHHHHHHHHHhcCCCCcccHH--HHHHHHHHHHHHHHH---HcCCCchhhHHH---HHHHHHhhhcChhhhHH
Q 000159 631 A-VQNLDQSVEILVRLVCMLPGWSEKNV--QVQQQVIEVINYLAA---TATKFPKKCVVL---CLLGISERVADIKTRAH 701 (2013)
Q Consensus 631 ~-~~~~~~~~~~lv~~L~~~pgl~DsN~--qV~~~~Le~l~~l~~---~~~~~~~~~~~~---il~~LveKlgD~K~r~~ 701 (2013)
- +.... ...+.++|... --.|-+. -+...+=+++..+-. ....+...-+.. +++.+.++......++.
T Consensus 574 ~~pk~~a--~~~L~~lld~~-ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~l 650 (1133)
T KOG1943|consen 574 TEPKYLA--DYVLPPLLDST-LSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTL 650 (1133)
T ss_pred hhHHhhc--ccchhhhhhhh-cCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHH
Confidence 3 11111 01223333211 0122221 111222222221111 111112222222 46666666555443344
Q ss_pred HHHHHHHHHhhhC-------hhHHHHHHHHHh---hhCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCC
Q 000159 702 AMKCLTTFSEAVG-------PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQS 770 (2013)
Q Consensus 702 a~e~L~~l~e~~~-------~~~Vl~~L~~~l---~~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~ 770 (2013)
-..+...+.|.++ ++++.+..-..+ ..+.| .+|.++...+++++..|-.... ...+++......+-..
T Consensus 651 mr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~ 729 (1133)
T KOG1943|consen 651 MRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKC 729 (1133)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCc
Confidence 4555555555443 234444322222 12334 6788888888888877643211 1113444333321344
Q ss_pred CcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCccc
Q 000159 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 850 (2013)
Q Consensus 771 ~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dI 850 (2013)
.+..+|..-+..++.+-..+ +... .++.+ .+
T Consensus 730 ~~~~~r~g~~lal~~lp~~~---i~~~-------~q~~l----c~----------------------------------- 760 (1133)
T KOG1943|consen 730 SEERIRRGLILALGVLPSEL---IHRH-------LQEKL----CK----------------------------------- 760 (1133)
T ss_pred hHHHHHHHHHHHHccCcHHh---hchH-------HHHHH----HH-----------------------------------
Confidence 46666766555554432111 1110 01111 11
Q ss_pred ccccchHHHHhc-CCCCh-HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--------cchhHHHHHHHHHHHH
Q 000159 851 SGKFTPTLVKSL-ESPDW-KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--------YDSNKNLVMATLITLG 920 (2013)
Q Consensus 851 s~~L~~~ll~~l-~d~~W-k~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL--------~DsN~~V~~~Al~~l~ 920 (2013)
.++... +|. | ..|..++.++..++..-.....+..+.+++..|.+.| +|--.-|+.+|+..+.
T Consensus 761 ------~~l~~~p~d~-~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~ 833 (1133)
T KOG1943|consen 761 ------LVLELLPSDA-WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALS 833 (1133)
T ss_pred ------HHhccCcccc-cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHH
Confidence 111111 122 5 3477777777776653222233334455555555554 3445668899999988
Q ss_pred HHHHHhC-h-hhHh-hhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHH---HHHHHh-cCCCChhhHHHH
Q 000159 921 AVASAMG-P-AVEK-SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY---VTTALT-DAKLGAEGRKDL 993 (2013)
Q Consensus 921 ~La~alg-~-~~~~-~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~---l~~~L~-~~k~~p~~R~~~ 993 (2013)
.+..-+. + -++. .+..++..+++...|+-...|+.|..|+..++.+-.--..++. +.+.+. +...++..=...
T Consensus 834 ~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~~~i~~~~~~~~L~ei~~~~~a~~~~~~~~~ 913 (1133)
T KOG1943|consen 834 SLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVHSPSIPHFRHIEKLEEIFPRDYANVPWALPPT 913 (1133)
T ss_pred hhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeecCCCCCcchHHHHHHhhcCcccccCCCcccch
Confidence 8876653 3 3444 3556677788888888888899999999998877111112222 222221 000001000011
Q ss_pred HHHHHHHhccCCCCCCh-hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcC
Q 000159 994 FDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (2013)
Q Consensus 994 l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~ 1071 (2013)
...+.-.+. ..+.. .+.+..+...+..-....++.|.+++..+++ +...+.+-.+..+..-...+.+.+-..+
T Consensus 914 ~f~L~~~Ll---~~~~y~~~v~lGl~vs~ggl~esl~k~a~q~l~e~~R--~~~~dp~t~~~~~stl~~~~~~~l~~er 987 (1133)
T KOG1943|consen 914 LFPLNSSLL---ELPRYYEEVLLGLVVSLGGLTESLIKLAKQALLEYVR--DENSDPKTIGSRDSTLLQLIEEALLNER 987 (1133)
T ss_pred hhhHHHHHH---hhHHHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHH--HhhcCcccccchHHHHHHHHHHHHHHHH
Confidence 111111111 01122 2333334444544455667777777777777 5444444445555555555665554433
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.53 Score=63.62 Aligned_cols=498 Identities=17% Similarity=0.143 Sum_probs=264.6
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh---HhHHHHHHHHhh----cCChHHHHHHHHHHHHHHHhc
Q 000159 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVK----NKVPLVRSLTLNWVTFCIETS 434 (2013)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l---~~il~~l~~~l~----~Knp~vR~~~l~~L~~~l~~~ 434 (2013)
-+++.++-.|+..+.|+...||=++.+.+..+... .+. ++++..++..+. +..|- +++.+|+.+...
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~r--lp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~r- 410 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSR--LPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALR- 410 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHcc--CcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhc-
Confidence 46778999999999999999999999999998876 332 334454544332 33343 666666654322
Q ss_pred ChhHHHHhhhhHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCC
Q 000159 435 SKAAVLKVHKDYVPICMECLN--------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD 506 (2013)
Q Consensus 435 ~~~~l~~~l~~l~p~l~k~l~--------Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~ 506 (2013)
+ =.+...+..++|.+.+++. -.-..|||+|+=.+|+|.+......+.|++..|-..
T Consensus 411 G-lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~--------------- 474 (1133)
T KOG1943|consen 411 G-LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASA--------------- 474 (1133)
T ss_pred C-CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHH---------------
Confidence 1 0122346889999999883 223579999999999999988876666666544321
Q ss_pred CCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCC
Q 000159 507 VATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP 586 (2013)
Q Consensus 507 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~ 586 (2013)
T Consensus 475 -------------------------------------------------------------------------------- 474 (1133)
T KOG1943|consen 475 -------------------------------------------------------------------------------- 474 (1133)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc--chHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 000159 587 SEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--DQSVEILVRLVCMLPGWSEKNVQVQQQVI 664 (2013)
Q Consensus 587 ~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~--~~~~~~lv~~L~~~pgl~DsN~qV~~~~L 664 (2013)
-++..+++..-.-|.+|--.|++.+...++. +...-..+.+++. .-++...
T Consensus 475 ------------------LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV---------~~rsNcy 527 (1133)
T KOG1943|consen 475 ------------------LLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSV---------TNRSNCY 527 (1133)
T ss_pred ------------------HHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhh---------hhhhhHH
Confidence 1123344444445555555555555432221 0011112233321 1123333
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHhh-hc--ChhhhHHHHHHHHHHHhhh---ChhHHHHHHHHHhhhCCChhHHHHH
Q 000159 665 EVINYLAATATKFPKKCVVLCLLGISER-VA--DIKTRAHAMKCLTTFSEAV---GPGFIFERLYKIMKDHKNPKVLSEG 738 (2013)
Q Consensus 665 e~l~~l~~~~~~~~~~~~~~il~~LveK-lg--D~K~r~~a~e~L~~l~e~~---~~~~Vl~~L~~~l~~~KnpKv~~~~ 738 (2013)
..+...+..++.+ ...++..++.+ +- |.++|..+..+|..+.... ..++++..+++.. ..+++-.|.++
T Consensus 528 ~~l~~~ia~~~~y----~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~-ls~~~~~r~g~ 602 (1133)
T KOG1943|consen 528 LDLCVSIAEFSGY----REPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDST-LSKDASMRHGV 602 (1133)
T ss_pred HHHhHHHHhhhhH----HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhh-cCCChHHhhhh
Confidence 3333333333333 33445555543 44 4788999999999977653 2345666676663 57888889988
Q ss_pred HHHHHHHHHHhC-CCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhCh-hHHhhhhhccHHHHHHHHHHHhhC
Q 000159 739 ILWMVSAVEDFG-VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP-DIKGFLADVKPALLSALDAEYEKN 816 (2013)
Q Consensus 739 l~~L~~li~~fG-~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~-~l~~~L~~lkp~ll~~Le~ef~k~ 816 (2013)
....++++..+- .. +++..+... .-+-+..-+..+...+.+-|. ++. .-...+.|+.-+..
T Consensus 603 ~la~~ev~~~~~~l~-----~~~~~l~e~-----~i~~l~~ii~~~~~~~~~rg~~~lm------r~~~~~~Ie~~s~s- 665 (1133)
T KOG1943|consen 603 FLAAGEVIGALRKLE-----PVIKGLDEN-----RIAGLLSIIPPICDRYFYRGQGTLM------RQATLKFIEQLSLS- 665 (1133)
T ss_pred HHHHHHHHHHhhhhh-----hhhhhhHHH-----HhhhhhhhccHHHHHHhccchHHHH------HHHHHHHHHHhhhc-
Confidence 888888875431 11 111100000 000000011112222222221 111 11122222221100
Q ss_pred CCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hh-
Q 000159 817 PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TG- 894 (2013)
Q Consensus 817 ~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-~~- 894 (2013)
.. | ..+...+. ..-.-+.+.+.+.| .+|.+++.++.+++.. ....+. ..
T Consensus 666 ---~~----~-----------------~~~~~v~e-~~~~ll~~~l~~~n-~i~~~av~av~~l~s~---y~~~d~~~~~ 716 (1133)
T KOG1943|consen 666 ---KD----R-----------------LFQDFVIE-NWQMLLAQNLTLPN-QIRDAAVSAVSDLVST---YVKADEGEEA 716 (1133)
T ss_pred ---cc----h-----------------hHHHHHHH-HHHHHHHHhhcchH-HHHHHHHHHHHHHHHH---HHhcCchhhh
Confidence 00 0 00000000 00001112335567 8999999999999873 333322 12
Q ss_pred hHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHh-ChhhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcC---
Q 000159 895 ELFGGLRGRL-YDSNKNLVMATLITLGAVASAM-GPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVH--- 968 (2013)
Q Consensus 895 eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~al-g~~~~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~g--- 968 (2013)
+++.....++ +.++..+++.-.-+++.+-.-+ ... +-+.+...++..+- |--+.-|+..+.+++.++...+
T Consensus 717 ~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~---~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~ 793 (1133)
T KOG1943|consen 717 PLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRH---LQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLL 793 (1133)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchH---HHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 3544444444 5557777765544444433211 111 12233444444443 3367788888889888887765
Q ss_pred ----chhhHHHHHHHHhc------CCCChhhHHHHHHHHHHHhccCCCCCC-hhhhHHHHHhh----cCCCChHHHHHHH
Q 000159 969 ----LDKMVPYVTTALTD------AKLGAEGRKDLFDWLSKQLTGLSGFPD-AAHLLKPASIA----MTDKSSDVRKAAE 1033 (2013)
Q Consensus 969 ----l~~ll~~l~~~L~~------~k~~p~~R~~~l~~L~~~l~~~~~~~~-~~~ll~pl~~~----L~D~~~dVR~aA~ 1033 (2013)
..++++.+..+|.+ +.+...+|..++..+.........++- ..+.+.+++.+ --|+-...|.-|.
T Consensus 794 ~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~ 873 (1133)
T KOG1943|consen 794 FSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAA 873 (1133)
T ss_pred ccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46677777777763 112355777777777766555543221 23444444443 3566666688888
Q ss_pred HHHHHHHHH
Q 000159 1034 ACIVEILRA 1042 (2013)
Q Consensus 1034 ~~L~~l~~~ 1042 (2013)
.|+..+..+
T Consensus 874 ~~~~qi~~~ 882 (1133)
T KOG1943|consen 874 SALNQIVVH 882 (1133)
T ss_pred HHHhceeec
Confidence 887777666
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0033 Score=83.76 Aligned_cols=301 Identities=15% Similarity=0.214 Sum_probs=196.8
Q ss_pred HHHHhhhcC-CCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh--
Q 000159 604 ADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK-- 680 (2013)
Q Consensus 604 ~~l~~~L~s-~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~-- 680 (2013)
.-+..++++ +.-..|++|++-|...-.-.+. +...+-++.|+.. -|.|+..+|+..++++|..++..-.++.+.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d-e~~LDRVlPY~v~--l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD-EVKLDRVLPYFVH--LLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch-HHHHhhhHHHHHH--HhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 344445544 3456788999888765443222 1235556666644 379999999999999999988765555432
Q ss_pred --hHHHHHHHHHhhhcCh---hhhHHHHHHHHHHHhhhChhHHHHHHHH--HhhhCCChh----HH-HHHHHHHHHHHHH
Q 000159 681 --CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYK--IMKDHKNPK----VL-SEGILWMVSAVED 748 (2013)
Q Consensus 681 --~~~~il~~LveKlgD~---K~r~~a~e~L~~l~e~~~~~~Vl~~L~~--~l~~~KnpK----v~-~~~l~~L~~li~~ 748 (2013)
....++|.|-.-+.|. .+|-.-..+|-.+|+...-=..+.+.+. ++.+..|.. -. ..-+..|.
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~----- 576 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH----- 576 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-----
Confidence 3456777777766662 4676666677776653211011111111 111111111 00 00011111
Q ss_pred hCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccc
Q 000159 749 FGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (2013)
Q Consensus 749 fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~ 828 (2013)
..+-+.+..+ +.++.+.||.+-.+.++.|+.++|.. +
T Consensus 577 --------~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk~-----------------------k----------- 613 (1431)
T KOG1240|consen 577 --------HTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGKE-----------------------K----------- 613 (1431)
T ss_pred --------HHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhhc-----------------------c-----------
Confidence 1233344566 88888999999999999999988832 0
Q ss_pred cCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh-HHHHHHhcccch
Q 000159 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDS 907 (2013)
Q Consensus 829 r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~e-L~~~L~~rL~Ds 907 (2013)
+ + |+ |.+.|+.-|.|++|.-|-.-.+.+-++. -.+.+....| |++.|.+.|.|.
T Consensus 614 -s-----------N------D~---iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 614 -S-----------N------DV---ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred -c-----------c------cc---hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCc
Confidence 0 1 11 5678888899999999999888777654 3455442344 567778889999
Q ss_pred hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHh
Q 000159 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALT 981 (2013)
Q Consensus 908 N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----~~ll~~l~~~L~ 981 (2013)
..-|+..||.++..|++. |--=++++..++..++-.|...+..||.++...+-++.++++- -.++|.|-++|.
T Consensus 669 EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred chhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 999999999999988864 2223467888888888899999999999999999999988862 345666666665
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0048 Score=75.46 Aligned_cols=190 Identities=16% Similarity=0.098 Sum_probs=140.2
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcC---CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh--hcchhh
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLAST---KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~---pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~--~~f~~~ 363 (2013)
++.+.+.+++=+.|.++|..+..++.. +.+....+.+|+..+.+.++-....=...|+++++.++-.+| ..-+..
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 566778889999999999999887632 222335678999999999985545667889999999999887 444566
Q ss_pred hHhHHHHHHHHhccCcH--HHHHHHHHHHHHHHHhcCCChHh------HHHHHHHHh--h----------cCChHHHHHH
Q 000159 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSV--K----------NKVPLVRSLT 423 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~--~V~~aa~~aL~ai~~~~~~~l~~------il~~l~~~l--~----------~Knp~vR~~~ 423 (2013)
...+.|.|..-+.|... .+|.++..||..+.-.++...+. +++.|+... + ..++.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 77888888888887643 46667766776544332333332 344333221 1 1236788888
Q ss_pred HHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 424 l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
+.--+.++...+...+...+...+|.+..+|+..+.+||-+|-++++.++....+
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8877888877777666677888999999999999999999999999999988764
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.31 Score=64.19 Aligned_cols=396 Identities=14% Similarity=0.162 Sum_probs=231.5
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhc
Q 000159 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 801 (2013)
Q Consensus 722 L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~l 801 (2013)
++..+ ...+......++..|..++..+....+ ...+.+++.. ||.|+++.||.-+.+.++.+-...+..+.
T Consensus 43 lf~~L-~~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~------ 113 (503)
T PF10508_consen 43 LFDCL-NTSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAAQ------ 113 (503)
T ss_pred HHHHH-hhcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHHH------
Confidence 44443 344666777788888888876654433 4567788887 49999999999998886544322110000
Q ss_pred cHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHH
Q 000159 802 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL 881 (2013)
Q Consensus 802 kp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il 881 (2013)
-+ .. ..+.+.++..+.|.+-.+-+.|+..|..+.
T Consensus 114 -------------~~-----------------------------~~----~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 114 -------------LL-----------------------------VD----NELLPLIIQCLRDPDLSVAKAAIKALKKLA 147 (503)
T ss_pred -------------Hh-----------------------------cC----ccHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 00 00 113456778889999999999999999887
Q ss_pred HhccccCCCCCh-hhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh--HHHHHHHHhCCCcHHHHHHHHH
Q 000159 882 EEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLT 958 (2013)
Q Consensus 882 ~~a~~~I~~~~~-~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~~L~D~k~~Vr~aa~~ 958 (2013)
... ..+. ..| .++...|...+...|..++..+++++..++..- .....++.. +++.+++.|.+..-.++-.+.+
T Consensus 148 ~~~-~~~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 148 SHP-EGLE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred CCc-hhHH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 521 1110 011 233777777777767788888888887776443 333344444 9999999999988899999999
Q ss_pred HHHHHHHhcC-c-----hhhHHHHHHHHhcCCCChhhH-HHHHHHHHHHhccCCC--CCC----hhhhHHHHHhhcCCCC
Q 000159 959 VLDAWLAAVH-L-----DKMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGLSG--FPD----AAHLLKPASIAMTDKS 1025 (2013)
Q Consensus 959 aL~~i~~~~g-l-----~~ll~~l~~~L~~~k~~p~~R-~~~l~~L~~~l~~~~~--~~~----~~~ll~pl~~~L~D~~ 1025 (2013)
.|..++..-. . ..+++.|...+.+.+.+|..+ .-+.+.+ +.+..+.. ... ...++..+..+++..+
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~-~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM-KFFGNLARVSPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999998432 1 235666777776544345112 2222222 22222211 112 2334444666778999
Q ss_pred hHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000159 1026 SDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 1104 (2013)
Q Consensus 1026 ~dVR~aA~~~L~~l~~~~-G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 1104 (2013)
...|..|..+++.+.... |...+ ..+-.+.-+..+..+-...+.. +
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L---~~~~~~~~~~~l~~~~~~~~~~-----~------------------------- 350 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLL---LQKQGPAMKHVLKAIGDAIKSG-----S------------------------- 350 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHH---HhhcchHHHHHHHHHHHHhcCC-----c-------------------------
Confidence 999999999999775433 22222 1112222222222221111100 0
Q ss_pred cCCCCCCCCCCCcccccchhhhhhhhhcccCCCChHHHhh-hhhcc-c-cc-cCCChhHHHHHHHHHHhhhhH---H-HH
Q 000159 1105 SRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVRR-F-KF-EDPRIEQIQELENDMMKYFRE---D-LH 1176 (2013)
Q Consensus 1105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~-~~~~k-~-~f-~~p~~e~ve~L~~q~~~~~~~---~-l~ 1176 (2013)
-+-|.+ +..+. + .+ .+...+++-.+...+...++. . ++
T Consensus 351 ----------------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l 396 (503)
T PF10508_consen 351 ----------------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLL 396 (503)
T ss_pred ----------------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHH
Confidence 000000 00000 0 00 011223332333333333322 1 44
Q ss_pred HhhcccCHHH-HHHHHHHHHHhcccCh-hhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHH
Q 000159 1177 RRLLSTDFKK-QVDGLEMLQKALPSIR-KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (2013)
Q Consensus 1177 ~~lfs~D~k~-~~~al~~L~~~l~~~~-~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~ 1243 (2013)
-.+...+|-+ |++|+..|...+.+.- ...+.+.-=++.|++-|-.|++..+...-.+++..+.....
T Consensus 397 ~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 397 MSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 4455678765 8999999988877642 22344455589999999999999999999999998765544
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.22 Score=65.55 Aligned_cols=185 Identities=20% Similarity=0.265 Sum_probs=111.4
Q ss_pred hhhhccCCHHHHHHHHHHHHHHhcCCC----CC-CCChHHHHHHHHHHhccc--CHHHHHHHHHHHHHHHHHhhhcchhh
Q 000159 291 WEGVKATKWSERKDAVAELTKLASTKR----IA-PGDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLRTHFSGS 363 (2013)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~pk----i~-~~~~~~l~~~L~k~l~D~--N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (2013)
...+.+.+--.|..+++.|..++..+. +. .+-+..|+..|...-.|. +....-..++..+.++..-...+-..
T Consensus 208 l~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~ 287 (503)
T PF10508_consen 208 LKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL 287 (503)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH
Confidence 334455555667777887777764221 11 122334444444433344 44444555677777776522333333
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cC--------CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000159 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GC--------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~--~~--------~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~ 433 (2013)
...++..++..+....+..+..|.+|+..+..+ |. ..+..++..+.....+....+|..+++.++.++..
T Consensus 288 ~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 288 YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 455666667777778888999999999888644 10 01122334444444556678999999999999765
Q ss_pred cCh---hHHHHhh---------hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 434 SSK---AAVLKVH---------KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 434 ~~~---~~l~~~l---------~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
... ..+.... +.....+...+.-+.|++|-+|...+.+++.+
T Consensus 368 ~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 368 GTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 432 1111111 11112788889999999999999999988855
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.053 Score=68.91 Aligned_cols=250 Identities=14% Similarity=0.143 Sum_probs=128.9
Q ss_pred hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHH
Q 000159 716 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (2013)
Q Consensus 716 ~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~ 795 (2013)
+.++..+... .....++||..+++.|-.+-+ |++ +. +.+-....+. +.|.+..||.+|++++............
T Consensus 197 ~~~~~~l~~~-~~~~D~~Vrt~A~eglL~L~e--g~k-L~-~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 197 EHAARGLIYL-EHDQDFRVRTHAVEGLLALSE--GFK-LS-KACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHHH-hcCCCcchHHHHHHHHHhhcc--ccc-cc-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3455544444 467889999999999877766 332 11 3455666777 9999999999999998766544421111
Q ss_pred hhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCC-------ChH
Q 000159 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-------DWK 868 (2013)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~-------~Wk 868 (2013)
.+-+ -.+..++-|.++-..-... .=.+|....+ .+ ....++..+++.+.-|+ -|+
T Consensus 271 ~e~~-----e~kl~D~aF~~vC~~v~D~-sl~VRV~AaK---------~l---G~~~~vSee~i~QTLdKKlms~lRRkr 332 (823)
T KOG2259|consen 271 RESE-----EEKLKDAAFSSVCRAVRDR-SLSVRVEAAK---------AL---GEFEQVSEEIIQQTLDKKLMSRLRRKR 332 (823)
T ss_pred chhh-----hhhhHHHHHHHHHHHHhcC-ceeeeehHHH---------Hh---chHHHhHHHHHHHHHHHHHhhhhhhhh
Confidence 1111 1223344444331100000 0001111100 00 00111122222221111 233
Q ss_pred HHHHHHHHHHHHHHhc----cccCC---CC---C-------hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhH
Q 000159 869 VRLESIEAVNKILEEA----NKRIQ---PA---G-------TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931 (2013)
Q Consensus 869 ~R~eale~l~~il~~a----~~~I~---~~---~-------~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~ 931 (2013)
.-.+.-..+ .... +++.. |+ + -+.-..+|..-|.|.=--|+..|...+..||..- +.
T Consensus 333 ~ahkrpk~l---~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~-- 406 (823)
T KOG2259|consen 333 TAHKRPKAL---YSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PG-- 406 (823)
T ss_pred hcccchHHH---HhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CC--
Confidence 222221111 1110 01110 00 0 0112356666667777777777777777776432 22
Q ss_pred hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000159 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-DKMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (2013)
Q Consensus 932 ~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl-~~ll~~l~~~L~~~k~~p~~R~~~l~~L~ 998 (2013)
|....+--++..|+|--..||--|+.+|..+..++.+ +..++.+...|.+. ++++|.++.+.|.
T Consensus 407 -FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~--s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 407 -FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDR--SVDVREALRELLK 471 (823)
T ss_pred -cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 3345556667777777777888888888877777665 44667777777765 4677777766664
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.018 Score=77.21 Aligned_cols=288 Identities=15% Similarity=0.090 Sum_probs=185.7
Q ss_pred HHHHHHHhhhcCh---hhhHHHHHHHHHHHhhhChhHHHHHHHHHh---hhCCChhHHHHHHHHHHHHHHH---hCCCC-
Q 000159 684 LCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVED---FGVSH- 753 (2013)
Q Consensus 684 ~il~~LveKlgD~---K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l---~~~KnpKv~~~~l~~L~~li~~---fG~~~- 753 (2013)
.+++.+...+-.. -.|-.|.+.|..++...+-+..+++++++. +.+..++||..++..|++++.- +....
T Consensus 422 l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 422 LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 3344444444333 356778888888887776655555555543 4677899999999999999863 22222
Q ss_pred -CChhhHHHHHHhcCCCC-CcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCC---CCCCCCcccc
Q 000159 754 -LKLKDLIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF---EGTVVPKKTV 828 (2013)
Q Consensus 754 -l~~k~li~~l~~~gL~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~---~~~p~p~R~~ 828 (2013)
+-+..+++.+..+ +.+ ++..||-+-..++..|.... ..|++ .-|+.... ..+-.-+.+
T Consensus 502 niF~eYlfP~L~~l-~~d~~~~~vRiayAsnla~LA~tA----~rFle-----------~~q~~~~~g~~n~~nset~~- 564 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHL-LNDSSAQIVRIAYASNLAQLAKTA----YRFLE-----------LTQELRQAGMLNDPNSETAP- 564 (1431)
T ss_pred hhhHhhhhhhhHhh-hccCccceehhhHHhhHHHHHHHH----HHHHH-----------HHHHHHhcccccCccccccc-
Confidence 2245677788877 777 66779999999988876432 22221 11110000 000000000
Q ss_pred cCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchh
Q 000159 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN 908 (2013)
Q Consensus 829 r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN 908 (2013)
.+ ...-...++...+-..+...+.|..--+|..-|+.|..++. .-.+.+.+ .=|+.-|..-|+|..
T Consensus 565 -~~----------~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~-FFGk~ksN--D~iLshLiTfLNDkD 630 (1431)
T KOG1240|consen 565 -EQ----------NYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCV-FFGKEKSN--DVILSHLITFLNDKD 630 (1431)
T ss_pred -cc----------ccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH-Hhhhcccc--cchHHHHHHHhcCcc
Confidence 00 00000111111122334456788888888888888777764 11233333 346788888899999
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-----hhhHHHHHHHHhcC
Q 000159 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-----DKMVPYVTTALTDA 983 (2013)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl-----~~ll~~l~~~L~~~ 983 (2013)
++++..-.+-|..++--+|.. ...+.++|.+...|.|..+.|...|..|+..+++.--+ -.++..+.+.|.++
T Consensus 631 w~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP 708 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP 708 (1431)
T ss_pred HHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc
Confidence 999998888877777666755 22346889999999999999999999999999987543 45666777888888
Q ss_pred CCChhhHHHHHHHHHHHhccCCC
Q 000159 984 KLGAEGRKDLFDWLSKQLTGLSG 1006 (2013)
Q Consensus 984 k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2013)
|.-+|..++.++......+..
T Consensus 709 --N~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 709 --NLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred --hHHHHHHHHHHHHHHHhhhhh
Confidence 578999999999887776654
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0018 Score=65.06 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCC
Q 000159 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN 948 (2013)
Q Consensus 869 ~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~ 948 (2013)
.|+.||-.|..+.......+... +.+|++.+...+.|.++.|+..||+.+..|++..+..+-+|...++..+.+.+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 48888888888876433444433 58899999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 000159 949 KKHMRECTLTVLDAW 963 (2013)
Q Consensus 949 k~~Vr~aa~~aL~~i 963 (2013)
++.||.+| ..|+.+
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99999998 444443
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=1.9 Score=56.83 Aligned_cols=144 Identities=16% Similarity=0.117 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhhcchhhhHhH-HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHH
Q 000159 347 QAIGNLARGLRTHFSGSSRFL-LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLN 425 (2013)
Q Consensus 347 ~~l~~La~~L~~~f~~~~~~l-lp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~ 425 (2013)
+=+|+||-.|-=+=.+-+..+ ...|-+-|...++.|+-.|..++..++.. --..++.|++..-++|.+|-+|.-++.
T Consensus 87 KRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~--EmardlapeVe~Ll~~~~~~irKKA~L 164 (866)
T KOG1062|consen 87 KRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP--EMARDLAPEVERLLQHRDPYIRKKAAL 164 (866)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH--HHhHHhhHHHHHHHhCCCHHHHHHHHH
Confidence 446677765543323334443 34444557778888887777777776542 234678899999999999999999998
Q ss_pred HHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHH
Q 000159 426 WVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499 (2013)
Q Consensus 426 ~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~ 499 (2013)
...+++.+.+. .+..+++...+.|.|.+..|=-++...+..+++.-.+ .+ .+..++-+.--+-+++.
T Consensus 165 ca~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l-~~fr~l~~~lV~iLk~l 231 (866)
T KOG1062|consen 165 CAVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-AL-SYFRDLVPSLVKILKQL 231 (866)
T ss_pred HHHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HH-HHHHHHHHHHHHHHHHH
Confidence 88888876543 3478899999999999999988888888888776443 22 23333444433444444
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0025 Score=64.02 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc
Q 000159 301 ERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (2013)
Q Consensus 301 eR~eaL~~L~~l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (2013)
.|+.+|..|.+++ .-++-....+.+|++.+.+.++|.+..|+..||+++..+++..+..+-+|...++..|.+.+.|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5899999998865 222223334578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000159 380 PTVAESLTQTLQAMH 394 (2013)
Q Consensus 380 ~~V~~aa~~aL~ai~ 394 (2013)
+.|+.++ +.|+.++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999988 5566554
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.2 Score=65.18 Aligned_cols=375 Identities=14% Similarity=0.161 Sum_probs=195.4
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (2013)
.++.+.|.|++=..+++||..+..++....+.......+|+-. .-.|..|...+.-.|..+++..+++. -
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNV------askn~EVKkLVyvYLlrYAEeqpdLA----L 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNV------ASKNIEVKKLVYVYLLRYAEEQPDLA----L 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh------hccCHHHHHHHHHHHHHHhhcCCCce----e
Confidence 4667788899999999999999998877655433444444433 34577777777666666777655531 1
Q ss_pred HHHHHHHhhhcChh--hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHH
Q 000159 684 LCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (2013)
Q Consensus 684 ~il~~LveKlgD~K--~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~ 761 (2013)
.-|..+-.-|+|+. +|..|..+|..|--..-...++-.+-+. ..+.+|.||..+..+|.++.. .+.+ +-..+++
T Consensus 108 LSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~-~~D~s~yVRk~AA~AIpKLYs-Ld~e--~k~qL~e 183 (968)
T KOG1060|consen 108 LSINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKA-VTDPSPYVRKTAAHAIPKLYS-LDPE--QKDQLEE 183 (968)
T ss_pred eeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHH-hcCCcHHHHHHHHHhhHHHhc-CChh--hHHHHHH
Confidence 11233334466653 5766666665543222122233333232 356778888877777766543 1211 1235777
Q ss_pred HHHhcCCCCCcHhHHHHHHHHHHHHHH----hhChhHH---hhhhhccH---H-HHHHHHHHHhhCCCCCCCCCcccccC
Q 000159 762 FCKDTGLQSSAAATRNATIKLLGALHK----FVGPDIK---GFLADVKP---A-LLSALDAEYEKNPFEGTVVPKKTVRA 830 (2013)
Q Consensus 762 ~l~~~gL~~~n~~VR~aA~~ll~~Ly~----~~G~~l~---~~L~~lkp---~-ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2013)
.++++ |.|.++-|-.+|..++-++|- .++...+ .+|.++.. . ++..|. .+.+... +.|+.
T Consensus 184 ~I~~L-LaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~-RYAR~~l---~~P~~---- 254 (968)
T KOG1060|consen 184 VIKKL-LADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLT-RYARHQL---PDPTV---- 254 (968)
T ss_pred HHHHH-hcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHH-HHHHhcC---CCccc----
Confidence 77777 888888887777777766651 1222111 11111110 0 111111 1111111 00000
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHH
Q 000159 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN 910 (2013)
Q Consensus 831 ~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~ 910 (2013)
. ++.+. ..-.|-+-+.... . ++ .+.....+...|++..+..|.-.|..
T Consensus 255 ---~-------~~~~e-------------~n~~~~~~~~~~~---~----~~--~P~~~d~D~~lLL~stkpLl~S~n~s 302 (968)
T KOG1060|consen 255 ---V-------DSSLE-------------DNGRSCNLKDKYN---E----IR--TPYVNDPDLKLLLQSTKPLLQSRNPS 302 (968)
T ss_pred ---c-------ccccc-------------cCccccccccccc---c----cC--CCcccCccHHHHHHhccHHHhcCCcH
Confidence 0 00000 0000000000000 0 00 01111223466788888899999999
Q ss_pred HHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhH
Q 000159 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGR 990 (2013)
Q Consensus 911 V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R 990 (2013)
|+..+++++=.+|... -+..|+-+++..|..+ ..++.....++..+..... .-|.|.+-...--.+...+++
T Consensus 303 VVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~-~lF~P~lKsFfv~ssDp~~vk 374 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRP-TLFEPHLKSFFVRSSDPTQVK 374 (968)
T ss_pred HHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcch-hhhhhhhhceEeecCCHHHHH
Confidence 9999998888877543 2334556666655544 3466666677777665543 223333333322111112333
Q ss_pred HHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000159 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2013)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~ 1045 (2013)
.-=+..|...+. ...+..+++-+..-+.+.+-++-.+|.++++.....+|.
T Consensus 375 ~lKleiLs~La~----esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 375 ILKLEILSNLAN----ESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred HHHHHHHHHHhh----hccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc
Confidence 333333333222 335566777777777666667888888888877776664
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.062 Score=68.36 Aligned_cols=330 Identities=15% Similarity=0.128 Sum_probs=206.7
Q ss_pred cchHHHHhcC-CCChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhh
Q 000159 854 FTPTLVKSLE-SPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (2013)
Q Consensus 854 L~~~ll~~l~-d~~Wk~R~eale~l~~il~~a~--~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~ 930 (2013)
+.+.|...+. +.+-+.|.||.-.|..|..+.. .+.-.. ...++.|...+...+..|..+|.-.++.|| +=++.+
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~--agavp~fi~Ll~s~~~~v~eQavWALgNIa-gds~~~ 186 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD--AGAVPIFIQLLSSPSADVREQAVWALGNIA-GDSPDC 186 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc--CCchHHHHHHhcCCcHHHHHHHHHHHhccc-cCChHH
Confidence 4566777775 6668889999999999986321 111111 456777899999999999999999999988 345777
Q ss_pred Hhhhhh--HHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000159 931 EKSSKG--VLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2013)
Q Consensus 931 ~~~~~~--llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2013)
..|+.. .+++++..+..+.+ .+...+.=+|..+++.-. +..++|.+...|.+. ++++..+++-.+ .+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAl-sy 263 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWAL-SY 263 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHH-HH
Confidence 777654 77899998888776 444555578888887753 355677777777655 477777766444 45
Q ss_pred hccCCCC-C--Ch-hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCCCCCC
Q 000159 1001 LTGLSGF-P--DA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVS 1076 (2013)
Q Consensus 1001 l~~~~~~-~--~~-~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~ 1076 (2013)
+...+.. - .+ ...++-++.+|......|+-.|-.+++.+ ..|.+.....+ ++...+..+..++.+..
T Consensus 264 Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI--vtG~d~QTq~v--i~~~~L~~l~~ll~~s~----- 334 (514)
T KOG0166|consen 264 LTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI--VTGSDEQTQVV--INSGALPVLSNLLSSSP----- 334 (514)
T ss_pred HhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce--eeccHHHHHHH--HhcChHHHHHHHhccCc-----
Confidence 5543321 1 11 22344488899999988987777776663 34444333222 11112222222111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCC
Q 000159 1077 MGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPR 1156 (2013)
Q Consensus 1077 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~ 1156 (2013)
++ -+| +.-=|....-.
T Consensus 335 --------------------------------------------------------------~~-~ik-kEAcW~iSNIt 350 (514)
T KOG0166|consen 335 --------------------------------------------------------------KE-SIK-KEACWTISNIT 350 (514)
T ss_pred --------------------------------------------------------------ch-hHH-HHHHHHHHHhh
Confidence 00 000 00113322211
Q ss_pred hhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHH--HHHHHHHHHHhhcCcchHHHHHHHhh
Q 000159 1157 IEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV--LDILLRWFVLQFCKSNTTCLLKVLEF 1234 (2013)
Q Consensus 1157 ~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~--lDlllk~~~lr~~dtN~~vl~k~Le~ 1234 (2013)
....++.+.-|..-+=+.|+..|-+.||+-|.+|.=.+.....+...+.+.. -.-+++-|+..|.-.+++++..+||.
T Consensus 351 AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~ 430 (514)
T KOG0166|consen 351 AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG 430 (514)
T ss_pred cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence 2223444555666677889999999999999999999998887766554432 22367777777777899999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcC
Q 000159 1235 LPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267 (2013)
Q Consensus 1235 l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd 1267 (2013)
|..++..-.... .+.. .-+.-+++..|-
T Consensus 431 l~nil~~~e~~~-~~~~----n~~~~~IEe~gg 458 (514)
T KOG0166|consen 431 LENILKVGEAEK-NRGT----NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHhc-cccc----cHHHHHHHHccC
Confidence 998777654432 1100 344556666554
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.39 Score=61.81 Aligned_cols=191 Identities=18% Similarity=0.232 Sum_probs=138.0
Q ss_pred HHHHh-cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHhChhhHhhh
Q 000159 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (2013)
Q Consensus 857 ~ll~~-l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (2013)
.++.. ....++-.|..+++.+..+++ |......+.+++..+...+ .......+..+++++..+++|+=-.-.+..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvN---K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVN---KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHc---CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 44443 344458999999999998874 4333334567777777666 566777888999999999999755556778
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--------C-----------chhhHHHHHHHHhcCCCChhhHHHHHH
Q 000159 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H-----------LDKMVPYVTTALTDAKLGAEGRKDLFD 995 (2013)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~--------g-----------l~~ll~~l~~~L~~~k~~p~~R~~~l~ 995 (2013)
..++..+++.|.| +.+...+..++.-++.-. + +..++|.+.+...+. +...|...+.
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~~~k~~yL~ 345 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--ChhhHHHHHH
Confidence 8899999999999 667778888888777551 1 233445555555433 2346777777
Q ss_pred HHHHHhccCCCC---CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000159 996 WLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (2013)
Q Consensus 996 ~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L 1055 (2013)
.|.-.+.+.+.. +++..+++-++.+|.=.+.+||.++-.+|..++..- .+.+.++++.|
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 888788877763 566777777999998889999999999999888877 56677766544
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.4 Score=61.92 Aligned_cols=258 Identities=11% Similarity=0.147 Sum_probs=144.9
Q ss_pred HHHhCCCCcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCc
Q 000159 156 LSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235 (2013)
Q Consensus 156 l~~fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R 235 (2013)
|..|++.-+ .+.+-.-+..+|+|+-+-||..|+.++--+|-.-.+ ++++.+ ..|+ ++++. +-|.
T Consensus 133 LS~fvTpdL-ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-Alr~~F-prL~-----------EkLeD-pDp~- 196 (877)
T KOG1059|consen 133 LSCIVTPDL-ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-ALRPCF-PRLV-----------EKLED-PDPS- 196 (877)
T ss_pred cccccCchh-hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-hHhhhH-HHHH-----------HhccC-CCch-
Confidence 456777422 267888888999999999999998888777766655 465543 3322 12221 1110
Q ss_pred cchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhh--ccCCHHHHHHHHHHHHHHh
Q 000159 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV--KATKWSERKDAVAELTKLA 313 (2013)
Q Consensus 236 ~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l--~s~kWkeR~eaL~~L~~l~ 313 (2013)
+-+....-- +. -+- =+| .+-+. |. +.||+.+ .+.+|---+ -++-+.+|.
T Consensus 197 -V~SAAV~VI----------CE----LAr-----KnP------knyL~-LA-P~ffkllttSsNNWmLIK-iiKLF~aLt 247 (877)
T KOG1059|consen 197 -VVSAAVSVI----------CE----LAR-----KNP------QNYLQ-LA-PLFYKLLVTSSNNWVLIK-LLKLFAALT 247 (877)
T ss_pred -HHHHHHHHH----------HH----HHh-----hCC------ccccc-cc-HHHHHHHhccCCCeehHH-HHHHHhhcc
Confidence 001100000 00 000 011 11111 22 4788877 558995321 222223333
Q ss_pred c-CCCCCCCChHHHHHHHHHHhcccC-HHHHHHHHHHHHHHHHH-----hhhcchhhhHhHHHHHHHHhccCcHHHHHHH
Q 000159 314 S-TKRIAPGDFTEVCRTLKKLITDVN-IAVAVEAIQAIGNLARG-----LRTHFSGSSRFLLPVLLEKLKEKKPTVAESL 386 (2013)
Q Consensus 314 ~-~pki~~~~~~~l~~~L~k~l~D~N-~~V~~~A~~~l~~La~~-----L~~~f~~~~~~llp~LL~klkdkk~~V~~aa 386 (2013)
- .|++-. .|+.-|...+.... -.+.. .|+..+..+ +..+ ...+..++.-|=.-+-|+.++..=-+
T Consensus 248 plEPRLgK----KLieplt~li~sT~AmSLlY---ECvNTVVa~s~s~g~~d~-~asiqLCvqKLr~fiedsDqNLKYlg 319 (877)
T KOG1059|consen 248 PLEPRLGK----KLIEPITELMESTVAMSLLY---ECVNTVVAVSMSSGMSDH-SASIQLCVQKLRIFIEDSDQNLKYLG 319 (877)
T ss_pred ccCchhhh----hhhhHHHHHHHhhHHHHHHH---HHHHHheeehhccCCCCc-HHHHHHHHHHHhhhhhcCCccHHHHH
Confidence 1 343322 23333444443221 11333 334333332 3232 34566777777777788999998888
Q ss_pred HHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCH-HHHHHH
Q 000159 387 TQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP-EVRDAA 465 (2013)
Q Consensus 387 ~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~-~VR~aA 465 (2013)
.-|+.-+.......+....+.|+.+|.++.+.+|..++..|..++.. +.+.+|+..|+..+.+++. .-|+.-
T Consensus 320 Llam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-------kNl~eIVk~LM~~~~~ae~t~yrdel 392 (877)
T KOG1059|consen 320 LLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK-------KNLMEIVKTLMKHVEKAEGTNYRDEL 392 (877)
T ss_pred HHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHhccchhHHHHH
Confidence 88888887641222344456788999999999999999999887653 2347788888888887777 556554
Q ss_pred HHHHHHHH
Q 000159 466 FSVLAAIA 473 (2013)
Q Consensus 466 ~~al~~l~ 473 (2013)
..-+..++
T Consensus 393 l~~II~iC 400 (877)
T KOG1059|consen 393 LTRIISIC 400 (877)
T ss_pred HHHHHHHh
Confidence 44444444
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.022 Score=64.29 Aligned_cols=130 Identities=21% Similarity=0.258 Sum_probs=100.9
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh
Q 000159 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (2013)
Q Consensus 866 ~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L 945 (2013)
++.+|..++-.+..++.. .|+.....++.+..+|.|.+..|+.+|+.++..|... ++-+.-..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r-----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR-----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHh-----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 467899999999999863 2344456778888999999999999999999998754 45555566778999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcC-------CCChhhHHHHHHHHHHHhcc
Q 000159 946 GDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDA-------KLGAEGRKDLFDWLSKQLTG 1003 (2013)
Q Consensus 946 ~D~k~~Vr~aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~-------k~~p~~R~~~l~~L~~~l~~ 1003 (2013)
.|.++.||..|..++..+...-+ +...++.+...|.+. ..+.+-|..++.+|...+.+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999843 344555666666532 22456678888888877763
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.06 Score=68.51 Aligned_cols=347 Identities=16% Similarity=0.153 Sum_probs=207.5
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccC--cc-----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~--~~-----~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~ 676 (2013)
...++.+.|.+-..++.+...+...+..... .+ ...+.++..|. .+.|..++-.+--+|+.++.....
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~-----~~~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLS-----RDDNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHc-----cCCChhHHHHHHHHHHHHhcCchh
Confidence 5667889999999999999999988866332 11 11344455443 244555666666667777653322
Q ss_pred CchhhH-HHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhC--hhHH-----HHHHHHHhhhCCChhHHHHHHHHHHHHH
Q 000159 677 FPKKCV-VLCLLGISERVADI--KTRAHAMKCLTTFSEAVG--PGFI-----FERLYKIMKDHKNPKVLSEGILWMVSAV 746 (2013)
Q Consensus 677 ~~~~~~-~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~--~~~V-----l~~L~~~l~~~KnpKv~~~~l~~L~~li 746 (2013)
.++..+ ...+|.++.-+.++ -+++.|.=+|..++.... -++| +..|+..+.....-....-+...|+++.
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 222111 22466666655554 478888777777765322 1233 3344444322222234455566677766
Q ss_pred HHhCC-CCC-ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh-hhccHHHHHHHHHHHhhCCCCCCCC
Q 000159 747 EDFGV-SHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKNPFEGTVV 823 (2013)
Q Consensus 747 ~~fG~-~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~ef~k~~~~~~p~ 823 (2013)
..--. ..+ .++.+++.+..+ +.++|++|..-|..++.+|-....+.+...+ .++-|.+.+.|...-.++. .+
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~l-l~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~----~P 298 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRL-LHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVV----TP 298 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccc----cH
Confidence 53211 122 367889999888 9999999999999998877655444455444 4556666555544211111 00
Q ss_pred CcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcC-CCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000159 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2013)
Q Consensus 824 p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~-d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~ 902 (2013)
..|.+-. -. .|.|....+=|.....+-|...+. ..+-++|+||.-.|..|..+....|+.-.-..+++.|..
T Consensus 299 aLRaiGN-Iv------tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 299 ALRAIGN-IV------TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLIN 371 (514)
T ss_pred HHhhccc-ee------eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHH
Confidence 1121100 00 011111111111223345555566 556779999999999998744334554333578999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhChhhHhhhh--hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000159 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (2013)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~--~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~ 967 (2013)
.|......++.+|+-+|+.++..-.++.-.|+- .+++++...|.-....+...+..+|..+....
T Consensus 372 ~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 372 LLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 998888999999999999888776666555543 37788888887666666667666666665543
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.1 Score=66.98 Aligned_cols=191 Identities=15% Similarity=0.183 Sum_probs=149.3
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHH
Q 000159 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~pki~~~-~~~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (2013)
...++-.|..+++.+..+++ |...+ .+.+++..+...+ ..........++.++.-+++||=-.-++....++..++
T Consensus 200 ~~~~~~~~~~~~~~la~LvN--K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVN--KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 45669999999998888875 34333 4677777777777 46666678888999999999886555688999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh-c-C----CC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000159 373 EKLKEKKPTVAESLTQTLQAMHKA-G-C----LN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (2013)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~ai~~~-~-~----~~-----------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~ 435 (2013)
+.+.+ +.+...+..++..++.- . + .+ +..++|.+..+.+..+...|...+..|..++.+.+
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 55677777777777654 0 0 01 34566777788777776799999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccH
Q 000159 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (2013)
Q Consensus 436 ~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~ 490 (2013)
+..+...++.++|.+.++|+=.+++||.++.+++..+..--. ..+..+++.|-+
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~-~~i~~hl~sLI~ 409 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP-ELISEHLSSLIP 409 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHH
Confidence 988888999999999999999999999999999988876653 346666665544
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.63 E-value=6.5 Score=55.48 Aligned_cols=95 Identities=18% Similarity=0.201 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHH--------HhChhhHhhhhhHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHh-cCc---hh
Q 000159 908 NKNLVMATLITLGAVAS--------AMGPAVEKSSKGVLSDILKCL----GDNKKHMRECTLTVLDAWLAA-VHL---DK 971 (2013)
Q Consensus 908 N~~V~~~Al~~l~~La~--------alg~~~~~~~~~llp~ll~~L----~D~k~~Vr~aa~~aL~~i~~~-~gl---~~ 971 (2013)
|.....-.+-++|.++. .-|+.+.+....+.-.++.+| ++.+..+|..|..+|+.++-. .++ ..
T Consensus 1185 ~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~ 1264 (1692)
T KOG1020|consen 1185 NFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSRE 1264 (1692)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHH
Confidence 44455667788888886 345555555555555555555 578899999999999988754 332 44
Q ss_pred hHHHHHHHHhcCCCChhhHHHHHHHHHHHhc
Q 000159 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (2013)
Q Consensus 972 ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~ 1002 (2013)
+...+...|.+.+.+...|..++.-+-.++.
T Consensus 1265 v~nly~~ila~~n~~~~~ki~~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1265 VLNLYDEILADDNSDIKSKIQLLQNLELYLL 1295 (1692)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 5556667777654323337777776665554
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.5 Score=58.97 Aligned_cols=154 Identities=20% Similarity=0.142 Sum_probs=110.7
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHH
Q 000159 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2013)
Q Consensus 865 ~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~ 944 (2013)
..|..|..+++.+..+- ..+....|+..+.|....|+..|...++.+.... ..+.+.+...
T Consensus 161 ~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 161 ALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred hHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 34678888877776543 2566788888999999999999999888776443 5677889999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCC
Q 000159 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024 (2013)
Q Consensus 945 L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~ 1024 (2013)
+.|....||.++..++..+ |...-.+.+...+.+. +..++.....++. .........++...+.|.
T Consensus 222 ~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 287 (335)
T COG1413 222 LSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLIDE 287 (335)
T ss_pred hcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhcc
Confidence 9999999999998887654 5555666777777755 3445555444443 112345566688889999
Q ss_pred ChHHHHHHHHHHHHHHHHcChhHHHHH
Q 000159 1025 SSDVRKAAEACIVEILRAGGQETIEKN 1051 (2013)
Q Consensus 1025 ~~dVR~aA~~~L~~l~~~~G~~~~~~~ 1051 (2013)
+..+|..+...+..+............
T Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~a~~~~ 314 (335)
T COG1413 288 ANAVRLEAALALGQIGQEKAVAALLLA 314 (335)
T ss_pred hhhHHHHHHHHHHhhcccchHHHHHHH
Confidence 999999999888776655554444433
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.87 Score=59.22 Aligned_cols=303 Identities=14% Similarity=0.218 Sum_probs=166.9
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHH---
Q 000159 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP--- 974 (2013)
Q Consensus 898 ~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~--- 974 (2013)
.++++-|+-.|-.|+-.+++.+..|-.. ..++.++|.+..+|....+-||.-|+-|+.++.... +.++|
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLkE~------ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~--~~L~pDap 173 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLKEP------ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF--EHLIPDAP 173 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcCcH------HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh--hhhcCChH
Confidence 4445556667778888888776654321 457889999999999999999999999999999883 22222
Q ss_pred -HHHHHHhcCCCChhhH------------HHHHHHHHHHhccCCCCCChhh-hHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000159 975 -YVTTALTDAKLGAEGR------------KDLFDWLSKQLTGLSGFPDAAH-LLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 975 -~l~~~L~~~k~~p~~R------------~~~l~~L~~~l~~~~~~~~~~~-ll~pl~~~L~D~~~dVR~aA~~~L~~l~ 1040 (2013)
.+..+|.... .|.-+ ..++.||...+...+.-.+..+ .+.-++.--..++++-|..-.+|+-.+.
T Consensus 174 eLi~~fL~~e~-DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL 252 (948)
T KOG1058|consen 174 ELIESFLLTEQ-DPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLL 252 (948)
T ss_pred HHHHHHHHhcc-CchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHH
Confidence 2334443221 12323 3456666666665554222222 2222222122255655555555554443
Q ss_pred HHcChhHHHHHhccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccc
Q 000159 1041 RAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120 (2013)
Q Consensus 1041 ~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~ 1120 (2013)
..-.....-+....|- . .+ ..|.. -
T Consensus 253 ~stssaV~fEaa~tlv-------------------~--------------------------lS--------~~p~a--l 277 (948)
T KOG1058|consen 253 SSTSSAVIFEAAGTLV-------------------T--------------------------LS--------NDPTA--L 277 (948)
T ss_pred hcCCchhhhhhcceEE-------------------E--------------------------cc--------CCHHH--H
Confidence 3322111111100000 0 00 00000 0
Q ss_pred cchhhhhhhhhcc-----cCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhh---HHHHHhhcccCHHHHHHHHH
Q 000159 1121 VQDFAVQSQALLN-----VKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR---EDLHRRLLSTDFKKQVDGLE 1192 (2013)
Q Consensus 1121 ~~~~~~~~~~~~~-----~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~---~~l~~~lfs~D~k~~~~al~ 1192 (2013)
+ ...+..+. ..+|.|- .+ .|-+-+|++....++. =+++.-|-+.|+--|-++++
T Consensus 278 k----~Aa~~~i~l~~kesdnnvkl-----Iv---------ldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktld 339 (948)
T KOG1058|consen 278 K----AAASTYIDLLVKESDNNVKL-----IV---------LDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLD 339 (948)
T ss_pred H----HHHHHHHHHHHhccCcchhh-----hh---------HHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHH
Confidence 0 00011111 0122221 00 0111112211122222 26777888999999999999
Q ss_pred HHHHhcccChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHH
Q 000159 1193 MLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272 (2013)
Q Consensus 1193 ~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~v 1272 (2013)
...+...+. |..-+..++..++.+||..-.-+.-.|=+.|+..+...--.|.++ |+..||.|++-+||..+..
T Consensus 340 i~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~-aatvV~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 340 IALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV-AATVVSLLLDFISDSNEAA 412 (948)
T ss_pred HHHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHhccCCHHH
Confidence 887776542 333355667778888877655566666677777777777778876 8889999999999988776
Q ss_pred HHHHHHHHHHHhhccCc
Q 000159 1273 REKMRELTKQIVNFYSA 1289 (2013)
Q Consensus 1273 r~~v~~il~~i~~v~p~ 1289 (2013)
-..|-..++.....||.
T Consensus 413 as~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 413 ASDVLMFVREAIEKFPN 429 (948)
T ss_pred HHHHHHHHHHHHHhCch
Confidence 66666666555555553
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=2.9 Score=51.95 Aligned_cols=106 Identities=10% Similarity=0.091 Sum_probs=70.4
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-----cchhHHHHHHHHHHHHHHHHHhChhhH--hhhh
Q 000159 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMATLITLGAVASAMGPAVE--KSSK 935 (2013)
Q Consensus 863 ~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL-----~DsN~~V~~~Al~~l~~La~alg~~~~--~~~~ 935 (2013)
...+.|+|..+++.++.++.-- ..+.+-.+++++..=+..+ ...|-.|+-.+|.+++.+.+.-.-+|. +.+.
T Consensus 494 ~Ad~dkV~~navraLgnllQvl-q~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~ 572 (728)
T KOG4535|consen 494 SADKDKVKSNAVRALGNLLQFL-QPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWAS 572 (728)
T ss_pred hhhhhhhhhHHHHHHhhHHHHH-HHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchH
Confidence 4457999999999998887632 2233333577765544433 456889999999999999876443332 4567
Q ss_pred hHHHHHHHHhCCCcHH-HHHHHHHHHHHHHHhcCc
Q 000159 936 GVLSDILKCLGDNKKH-MRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 936 ~llp~ll~~L~D~k~~-Vr~aa~~aL~~i~~~~gl 969 (2013)
.+++.++..+.|-+.. ||.-|..+|.......+.
T Consensus 573 ~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~ 607 (728)
T KOG4535|consen 573 QAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQY 607 (728)
T ss_pred HHHHHHHHHHHHhccceEeehhhhhhcCCCCcccc
Confidence 7888888777765443 666666666555444443
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.023 Score=55.74 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=69.8
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000159 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (2013)
Q Consensus 368 lp~LL~kl-kdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (2013)
+|.|++.+ .++.+.||..+..+|.. ..-..+++.|...+++++|.||..++..|..+ . -+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~----------~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE------LGDPEAIPALIELLKDEDPMVRRAAARALGRI-G----------DPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC------CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H----------HHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH------cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C----------CHHH
Confidence 57889999 89999999887777762 34568899999999999999999999998864 1 1557
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHH
Q 000159 447 VPICMECLND-GTPEVRDAAFSVLA 470 (2013)
Q Consensus 447 ~p~l~k~l~D-s~~~VR~aA~~al~ 470 (2013)
++.+.+.+.| .+..||.+|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888888865 55678999999885
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.092 Score=59.30 Aligned_cols=107 Identities=16% Similarity=0.273 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCC
Q 000159 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKV 416 (2013)
Q Consensus 338 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~-il~~l~~~l~~Kn 416 (2013)
|+.|+..++.+++.|+.. |...++..+|.+...|.|+.+.||..+..+|..++..+...+.. ++..++..+.+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 467888999999999875 44667778999999999999999999999999998874455544 4488888999999
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHH
Q 000159 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (2013)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p 448 (2013)
+.||..+..++..+.....+..+...+.+++-
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~ 108 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELIS 108 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999999998876444444333333333
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0079 Score=53.77 Aligned_cols=55 Identities=22% Similarity=0.182 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
|.+|..++..|+++... ....+.++++.++|.|..+|.|++++||.+|..+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~~-~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG-CPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTT-THHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcc-cHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 78999999999884433 34446678899999999999999999999999999754
|
... |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.23 Score=63.38 Aligned_cols=309 Identities=16% Similarity=0.166 Sum_probs=184.4
Q ss_pred hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC--hh
Q 000159 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KA 437 (2013)
Q Consensus 361 ~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~-il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~--~~ 437 (2013)
....+.+...+...+.+....||.+|.++|-++... ..+.+ +.......|.+.+-.||.++++.+...-..++ ..
T Consensus 193 ~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 193 THDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred cccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc--ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 333455555588888999999999999999988763 44444 45566778889999999999888776555552 11
Q ss_pred ---HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCc
Q 000159 438 ---AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSA 514 (2013)
Q Consensus 438 ---~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~ 514 (2013)
.-.++.+...-.++..+.|..-.||-.|+++||.|-.+-. +.+. ..||...+..++.- +.
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~i~---QTLdKKlms~lRRk--r~----------- 333 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EIIQ---QTLDKKLMSRLRRK--RT----------- 333 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HHHH---HHHHHHHhhhhhhh--hh-----------
Confidence 1125567777788899999999999999999998765533 2232 33453322222110 00
Q ss_pred cccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHH
Q 000159 515 RVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEI 594 (2013)
Q Consensus 515 ~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~ 594 (2013)
++++|..- -..+..++|.. ++ .+ + +.|+.
T Consensus 334 ----------------------------ahkrpk~l----~s~GewSsGk~-------~~---ad----v-----psee~ 362 (823)
T KOG2259|consen 334 ----------------------------AHKRPKAL----YSSGEWSSGKE-------WN---AD----V-----PSEED 362 (823)
T ss_pred ----------------------------cccchHHH----HhcCCcccCcc-------cc---cc----C-----chhhc
Confidence 00000000 00000111100 00 00 0 11222
Q ss_pred HHHhhccCc----HHHHhhhcCCCHHHHHHHHHHHHHHHHhccC-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHH
Q 000159 595 ESRLGSLIP----ADTVGQLKSAVWKERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669 (2013)
Q Consensus 595 e~~~~~~l~----~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~-~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~ 669 (2013)
++...++++ ..++.+|.+.-...|.+|+..+..+..+... .....+.|+.+ |+|----|..+++..|+.
T Consensus 363 d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDM------fNDE~~~VRL~ai~aL~~ 436 (823)
T KOG2259|consen 363 DEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDM------FNDEIEVVRLKAIFALTM 436 (823)
T ss_pred cccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH------hccHHHHHHHHHHHHHHH
Confidence 222233443 4566778888889999999999988776322 22345566665 578888899999999999
Q ss_pred HHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHH--HhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHH
Q 000159 670 LAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTF--SEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (2013)
Q Consensus 670 l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l--~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~ 747 (2013)
++.+ ..+.+..+..++..|.|.. ..+|+...+.|... ......+.++..+++.+ .|-|+.+-+.+.++..+-+
T Consensus 437 Is~~-l~i~eeql~~il~~L~D~s--~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L--~kyPqDrd~i~~cm~~iGq 511 (823)
T KOG2259|consen 437 ISVH-LAIREEQLRQILESLEDRS--VDVREALRELLKNARVSDLECIDMCVAHLLKNL--GKYPQDRDEILRCMGRIGQ 511 (823)
T ss_pred HHHH-heecHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh--hhCCCCcHHHHHHHHHHhc
Confidence 8886 4555555555554444433 34676666655432 11222344455555554 4667777777777666555
Q ss_pred HhC
Q 000159 748 DFG 750 (2013)
Q Consensus 748 ~fG 750 (2013)
.++
T Consensus 512 nH~ 514 (823)
T KOG2259|consen 512 NHR 514 (823)
T ss_pred cCh
Confidence 444
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.4 Score=52.81 Aligned_cols=241 Identities=15% Similarity=0.183 Sum_probs=162.5
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhcc
Q 000159 171 KMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 250 (2013)
Q Consensus 171 ~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~ 250 (2013)
..|.+.|-+.|..+|..|+.++.++...+.++ .|...++.-|-+.|
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--------~L~~~ev~~L~~F~-------------------------- 47 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD--------FLSRQEVQVLLDFF-------------------------- 47 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--------hccHHHHHHHHHHH--------------------------
Confidence 34667788899999999999998888777642 23344443333332
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHH
Q 000159 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTL 330 (2013)
Q Consensus 251 ~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L 330 (2013)
.+++ .+|.-=..++..+.+|++...+..+....++..+
T Consensus 48 ----------------------------------------~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l 85 (262)
T PF14500_consen 48 ----------------------------------------CSRL--DDHACVQPALKGLLALVKMKNFSPESAVKILRSL 85 (262)
T ss_pred ----------------------------------------HHHh--ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHH
Confidence 1222 2333334556677777765555555555666655
Q ss_pred HHHhc--ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHH
Q 000159 331 KKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVED 407 (2013)
Q Consensus 331 ~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~ 407 (2013)
.+.+. .--...+....+++..|...-+.....+...++..++..+ +||.|.-.--+...+..+... ..+....++
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~ 163 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE--FDISEFAED 163 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccchhHHH
Confidence 54333 2222345666777777776655555556667888888877 788888777777888877776 555667777
Q ss_pred HHHHhh---------cCC-h--HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 408 VKTSVK---------NKV-P--LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 408 l~~~l~---------~Kn-p--~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
+...+. .+| | -.|.+.-.-|..|+..++. + .+..+|.+..-|..+.+.|+.-+.++|......
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~--f---a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL--F---APFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh--h---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 665542 122 2 4666777778888875432 2 367889999999999999999999999999999
Q ss_pred hCchhHHHHHhhccHHHHH
Q 000159 476 VGMRPLERSIEKLDDVRRN 494 (2013)
Q Consensus 476 ~Ge~~~~~~l~~Ld~~~~k 494 (2013)
+|...+.+++..+=...|.
T Consensus 239 y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 239 YGADSLSPHWSTIWNALKF 257 (262)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9988899988887655443
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.6 Score=55.37 Aligned_cols=316 Identities=16% Similarity=0.199 Sum_probs=187.4
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhccCcc------hHHHHHHHHHhc----CCCCccc-HHHHHHHHHHHHHHHHHH---c
Q 000159 609 QLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAAT---A 674 (2013)
Q Consensus 609 ~L~s~~Wk~Rl~ale~L~~~v~~~~~~~------~~~~~lv~~L~~----~pgl~Ds-N~qV~~~~Le~l~~l~~~---~ 674 (2013)
+|.+.+--.|.+||..|...++..+... ...+.+++++.. .++=++. +..+..+++.++..++.. .
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 4567777889999999999998743321 123444444421 1222333 667888999999887753 1
Q ss_pred CCCchhhHHHHHHHHHhhhcChh-hhHHHHHHHHHHHh-hhChhHH----HHHHHHHh---hh-CCChhHHHHHHHHHHH
Q 000159 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIM---KD-HKNPKVLSEGILWMVS 744 (2013)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgD~K-~r~~a~e~L~~l~e-~~~~~~V----l~~L~~~l---~~-~KnpKv~~~~l~~L~~ 744 (2013)
..++......++...++.+.++. .|..+...|..+.+ .+++.++ ...++..+ .+ -++.-+..|.+..+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 34555556668888888888865 46666667776665 4555432 33333322 12 3445577899999999
Q ss_pred HHHHhCCCC-CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCC
Q 000159 745 AVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (2013)
Q Consensus 745 li~~fG~~~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~ 823 (2013)
++..+...= -+...-++.+... +-++...+|..|+.+...+...+|+.-. +-+.+.+.++..-.
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~~---------~s~~~~~~~~~~~~----- 225 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNKE---------LSKSVLEDLQRSLE----- 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhHH---------HHHHHHHHhccccc-----
Confidence 998875421 1223344444443 6788999999999999888888875311 11222222221100
Q ss_pred CcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCC-CChHHHHHHHHHHHHHHHhccccCC-CCChhhHHHHHH
Q 000159 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQ-PAGTGELFGGLR 901 (2013)
Q Consensus 824 p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d-~~Wk~R~eale~l~~il~~a~~~I~-~~~~~eL~~~L~ 901 (2013)
+. .+...+.+.+.+.+.+ ++.+.=...=-.+-.++. +..+. ...+.+.+....
T Consensus 226 ----------------------~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 226 ----------------------NG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLG--SSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred ----------------------cc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhC--CchhhccHhHhHHHHHHH
Confidence 00 0011122233333444 222211111112333332 12222 233578888888
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHhChh---hHhhhhhHHHHHHHHhCCCc-----HHHHHHHHHHHHHHH
Q 000159 902 GRLYDSNKNLVMATLITLGAVASAMGPA---VEKSSKGVLSDILKCLGDNK-----KHMRECTLTVLDAWL 964 (2013)
Q Consensus 902 ~rL~DsN~~V~~~Al~~l~~La~alg~~---~~~~~~~llp~ll~~L~D~k-----~~Vr~aa~~aL~~i~ 964 (2013)
..++.++..++.+|+.++..+.-++..+ ..+.++.++.++...+...+ ..++.++..++..++
T Consensus 281 ~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 281 KCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 8999999999999999999999887655 34667777777777765322 267888777766554
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.036 Score=62.13 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHh-hhcchhhhHhHHHHH-----------HH-HhccCcHHHHHHHHHHHHHHHHhc---------
Q 000159 340 AVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVL-----------LE-KLKEKKPTVAESLTQTLQAMHKAG--------- 397 (2013)
Q Consensus 340 ~V~~~A~~~l~~La~~L-~~~f~~~~~~llp~L-----------L~-klkdkk~~V~~aa~~aL~ai~~~~--------- 397 (2013)
+|+..|+.||+.+++.. ++.|..|+..++|.- +. -++|..+.||.++..++.+++...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37889999999999994 566888888888865 22 347999999999999999998760
Q ss_pred ----C---CCh----HhHHH----HHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHHhcCCCHH
Q 000159 398 ----C---LNL----VDVVE----DVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (2013)
Q Consensus 398 ----~---~~l----~~il~----~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~l~Ds~~~ 460 (2013)
. +++ ..++- .|..+++ ++++.+-.++++.+..+++.++-..+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 112 22222 3445555 678889999999999999988766554 56788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000159 461 VRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 461 VR~aA~~al~~l~~~~G 477 (2013)
||.++.-|++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876543
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.16 Score=62.33 Aligned_cols=184 Identities=19% Similarity=0.159 Sum_probs=122.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC----ChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhC--hhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA----GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAV 930 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~----~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg--~~~ 930 (2013)
+.+..+.+++-+.|.+||+.+..++.. +..+. .+..|+..+.+.++-....=...|+++++.++-.+| .+-
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~---~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSS---RYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 566778999999999999999999973 22221 145677778777755554566789999999999987 666
Q ss_pred HhhhhhHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhcC--chh------hHHHHHHH--Hh-cCCC-------ChhhH
Q 000159 931 EKSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWLAAVH--LDK------MVPYVTTA--LT-DAKL-------GAEGR 990 (2013)
Q Consensus 931 ~~~~~~llp~ll~~L~D~k~--~Vr~aa~~aL~~i~~~~g--l~~------ll~~l~~~--L~-~~k~-------~p~~R 990 (2013)
+...+.+.|.|...+.|... .+|.++..||.-+.-.++ .+. .++.++.. ++ +.+. ++.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 77888999999999988654 477888888876554433 222 23322222 22 1110 12333
Q ss_pred -HHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 991 -KDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 991 -~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
..+-.|- -.+...+. ...+...++.+...|+..+.+||.+|-+++..++....
T Consensus 204 ~aAL~aW~-lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 204 AAALSAWA-LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3333442 23333332 11234455558889999999999999999998877765
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.019 Score=56.44 Aligned_cols=85 Identities=26% Similarity=0.366 Sum_probs=68.0
Q ss_pred hHHHHhc-CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh
Q 000159 856 PTLVKSL-ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (2013)
Q Consensus 856 ~~ll~~l-~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (2013)
+.|++.+ +|++|.+|.+++..+..+- -.+.++.|...++|.|..|+..|+..++.+. .
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 3577777 8999999999988887321 2578899999999999999999999999773 2
Q ss_pred hhHHHHHHHHhCCC-cHHHHHHHHHHHH
Q 000159 935 KGVLSDILKCLGDN-KKHMRECTLTVLD 961 (2013)
Q Consensus 935 ~~llp~ll~~L~D~-k~~Vr~aa~~aL~ 961 (2013)
+..++.+.+.+.+. ...||.+|..+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45788889988775 5567999988874
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.01 E-value=2.9 Score=54.47 Aligned_cols=167 Identities=14% Similarity=0.188 Sum_probs=95.6
Q ss_pred cchHHHHhcCC--CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch-hHHHHHHHHHHHHHHHHHhC-hh
Q 000159 854 FTPTLVKSLES--PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMG-PA 929 (2013)
Q Consensus 854 L~~~ll~~l~d--~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~~l~~La~alg-~~ 929 (2013)
|.|.|++.|.+ .||- +=.|-++.. +-..+.|..-..|+..|...+... -..+.-.+++++-...-..| ++
T Consensus 219 LAP~ffkllttSsNNWm-----LIKiiKLF~-aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWV-----LIKLLKLFA-ALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred ccHHHHHHHhccCCCee-----hHHHHHHHh-hccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 56788888744 4893 233333332 224566665467777777776433 33455555554332211112 23
Q ss_pred hHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC
Q 000159 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (2013)
Q Consensus 930 ~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~ 1007 (2013)
-...+..++..+-..+-|+.++.+--+.-|+..++..-. ....-+.|..+|.+. .+..|..++..+...+. .
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVs----k 366 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVS----K 366 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhh----h
Confidence 344455666677777778888888888777777765432 233344567777665 35677777777665544 2
Q ss_pred CChhhhHHHHHhhcCCCCh-HHHHHH
Q 000159 1008 PDAAHLLKPASIAMTDKSS-DVRKAA 1032 (2013)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~-dVR~aA 1032 (2013)
..+..+++-+...+.+..+ ..|..-
T Consensus 367 kNl~eIVk~LM~~~~~ae~t~yrdel 392 (877)
T KOG1059|consen 367 KNLMEIVKTLMKHVEKAEGTNYRDEL 392 (877)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHH
Confidence 3455666666666555554 445443
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.014 Score=60.55 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=83.7
Q ss_pred chHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh-hhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~-~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
.+.+++.+.+.+|..|..++..+..+.... ........ .++++.|...|.|.|..|+..++.+++.|+..-......+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 356778888999999999999999988521 11111111 3678888888999999999999999999987654333333
Q ss_pred hh-hHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000159 934 SK-GVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (2013)
Q Consensus 934 ~~-~llp~ll~~L~D~k~~Vr~aa~~aL~~i~ 964 (2013)
.. .+++.+++.+.+.+..++..+..+|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 48999999999999999999999988764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.01 Score=46.47 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 446 l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
++|.+.++++|++++||.+|..+|+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.037 Score=57.27 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=83.9
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---CCC-hH-hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CLN-LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~---~~~-l~-~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (2013)
.+++.+++.+.+.+..++..+..++..+.... +.. .. .+++.+...+.+.++.++..++..|..+....+.. ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HH
Confidence 37888999999999999999999999887640 000 12 56788888899999999999999999987654322 22
Q ss_pred Hhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 441 ~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
... ..+++.+.+.+++.+.++|..|..+|+.++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222 448999999999999999999999998764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.66 Score=61.04 Aligned_cols=363 Identities=20% Similarity=0.216 Sum_probs=201.9
Q ss_pred hhcCCChhhhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh
Q 000159 10 EAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (2013)
Q Consensus 10 ~~~~lpl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~ 89 (2013)
+|---|+-.-+.|++==.|..+---+.+++....+ --+-.-+.+.++.++.|+|+.|-..|+.+|....+.-...
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~--~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~--- 194 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD--LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV--- 194 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh--hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC---
Confidence 33344555555566655666655555555532111 0001124566677788888888888888887776654321
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHH----HHHHHHHHhhh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC-
Q 000159 90 YAKEVCDAIAAKCLTGRPKTVEKA----QAVFMLWVELE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK- 162 (2013)
Q Consensus 90 ~~~~v~~~LveK~l~~k~~~k~~A----~~~ll~~~E~~--~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~- 162 (2013)
....+.+.++.+.+.+....-+.+ .+++..|.--+ ..+.+++.+.+.+.|-|+-++.+++..+.+.+..+-.-
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN 274 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence 011122333333333223333333 33333333111 13467777778888888888888888887776655430
Q ss_pred CcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhh
Q 000159 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (2013)
Q Consensus 163 ~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (2013)
..-.+.+-+.+..+++... .+ ---.+++++- ++...+.....++.-.|-
T Consensus 275 ~~~~~K~~~pl~tlls~~~-e~-------qyvaLrNi~l------il~~~p~~~~~~~~~Ff~----------------- 323 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSES-EI-------QYVALRNINL------ILQKRPEILKVEIKVFFC----------------- 323 (734)
T ss_pred HHHHHHhcccceeeecccc-hh-------hHHHHhhHHH------HHHhChHHHHhHhHeeee-----------------
Confidence 0012233333333443311 10 0111222210 011111111111100000
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCC
Q 000159 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 322 (2013)
Q Consensus 243 ~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~ 322 (2013)
.+.|| .|= +.+-++.+..+++. .+
T Consensus 324 -------------------------------kynDP-----------iYv---------K~eKleil~~la~~-----~n 347 (734)
T KOG1061|consen 324 -------------------------------KYNDP-----------IYV---------KLEKLEILIELAND-----AN 347 (734)
T ss_pred -------------------------------ecCCc-----------hhh---------HHHHHHHHHHHhhH-----hH
Confidence 11121 110 12234444444431 23
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH
Q 000159 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV 402 (2013)
Q Consensus 323 ~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~ 402 (2013)
..++...|+..-.+..+..+..|++||+.+|...... ..++..+|+.+.-+...|++.+...+..++.+..-..+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 5567778888778999999999999999999877654 67899999999988888999999999999988223346
Q ss_pred hHHHHHHHHhhc-CChHHHHHHHHHHHHHH-HhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 403 DVVEDVKTSVKN-KVPLVRSLTLNWVTFCI-ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 403 ~il~~l~~~l~~-Knp~vR~~~l~~L~~~l-~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
.++..+...+.+ .+|..| .++.||..-. +..+ ....++..+.+...|...+| ..+.+.+.+++|+.+
T Consensus 423 ~vv~~l~~~~~sl~epeak-~amiWilg~y~~~i~------~a~elL~~f~en~~dE~~~V---ql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAK-AALIWILGEYAERIE------NALELLESFLENFKDETAEV---QLELLTAAIKLFLKK 491 (734)
T ss_pred hhhhhhcccccccCChHHH-HHHHHHHhhhhhccC------cHHHHHHHHHhhcccchHHH---HHHHHHHHHHHHhcC
Confidence 677777666664 678887 4566665422 2222 22556677788888888777 567777777777754
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.1 Score=59.18 Aligned_cols=375 Identities=14% Similarity=0.198 Sum_probs=196.5
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (2013)
..++..+.+.||..|--|++.+..+ ..+...+.++.-+.+ +++|.+.-|+..+--.+..+-...++.. ...
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l-----~v~~i~ey~~~Pl~~--~l~d~~~yvRktaa~~vakl~~~~~~~~--~~~ 159 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCL-----RVDKITEYLCDPLLK--CLKDDDPYVRKTAAVCVAKLFDIDPDLV--EDS 159 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeE-----eehHHHHHHHHHHHH--hccCCChhHHHHHHHHHHHhhcCChhhc--ccc
Confidence 3456778899999999998776522 111123334443332 4678888887766555444333222221 112
Q ss_pred HHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHH----HhC
Q 000159 684 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVE----DFG 750 (2013)
Q Consensus 684 ~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~~-------~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~----~fG 750 (2013)
-+++.|-+-+.|. -+-..|..+|..+.|.... ..+...++.. ..+|-+|-.-.|- .+-
T Consensus 160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~a---------l~ec~EW~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 160 GLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEA---------LNECTEWGQIFILDCLAEYV 230 (734)
T ss_pred chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHH---------HHHhhhhhHHHHHHHHHhcC
Confidence 3445555555554 3556666677777775431 1222223322 2344555333332 222
Q ss_pred C-CCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCccccc
Q 000159 751 V-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (2013)
Q Consensus 751 ~-~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r 829 (2013)
. ...+...+++.+... |+|.|+.|-=++.+++..+-.++..--..++..+.|.+...+..+= ...+ ...|.++
T Consensus 231 p~d~~ea~~i~~r~~p~-Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qy----vaLrNi~ 304 (734)
T KOG1061|consen 231 PKDSREAEDICERLTPR-LQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQY----VALRNIN 304 (734)
T ss_pred CCCchhHHHHHHHhhhh-hccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhH----HHHhhHH
Confidence 2 223455788888887 9999999988888887665544433111122222222111111000 0000 0000000
Q ss_pred CccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhH
Q 000159 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909 (2013)
Q Consensus 830 ~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~ 909 (2013)
-- ... ...+-..++ .-|+=...|.-+ ++.+-++-+..++... ++.+++.-|+..-.+-..
T Consensus 305 li--l~~-----~p~~~~~~~-----~~Ff~kynDPiY-vK~eKleil~~la~~~-------nl~qvl~El~eYatevD~ 364 (734)
T KOG1061|consen 305 LI--LQK-----RPEILKVEI-----KVFFCKYNDPIY-VKLEKLEILIELANDA-------NLAQVLAELKEYATEVDV 364 (734)
T ss_pred HH--HHh-----ChHHHHhHh-----HeeeeecCCchh-hHHHHHHHHHHHhhHh-------HHHHHHHHHHHhhhhhCH
Confidence 00 000 000000111 011111222222 3344444444444322 146677777888888888
Q ss_pred HHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCCh
Q 000159 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 987 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~p 987 (2013)
..+..++++++.+|...... ..++..++..+.-+..-|.+.+...+..+.+.++ ++.+++.+...+.+=. +|
T Consensus 365 ~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~-ep 438 (734)
T KOG1061|consen 365 DFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQ-EP 438 (734)
T ss_pred HHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccC-Ch
Confidence 99999999999998665433 5678888888887788888888889999998885 4556555544443211 46
Q ss_pred hhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHH
Q 000159 988 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKA 1031 (2013)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~a 1031 (2013)
+.|.. +-||....... -++...++.-++....|....|+-.
T Consensus 439 eak~a-miWilg~y~~~--i~~a~elL~~f~en~~dE~~~Vql~ 479 (734)
T KOG1061|consen 439 EAKAA-LIWILGEYAER--IENALELLESFLENFKDETAEVQLE 479 (734)
T ss_pred HHHHH-HHHHHhhhhhc--cCcHHHHHHHHHhhcccchHHHHHH
Confidence 66655 44543322211 1244566666777777777666653
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.21 Score=61.33 Aligned_cols=403 Identities=18% Similarity=0.159 Sum_probs=191.7
Q ss_pred hccCCChHHHHHHHHHHHHHhhccCCCCchHHHhh------------hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchh
Q 000159 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIREL------------GPLFKKTVADSNAPVQDKALDALIAYLKAADAD 86 (2013)
Q Consensus 19 rl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~------------~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~ 86 (2013)
+..|-.-|.|..|+--+....+.++.. .-|.-+ ..++.-.++|.|+.+..-+|+.+.+++.....
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~~~--~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~- 80 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIEKK--VLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ- 80 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhhhh--hhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-
Confidence 456677899999998888877654211 111100 12233369999999999999999888876532
Q ss_pred hhhhHHHHHHHHHHhhcCCChhHHH------HHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhC
Q 000159 87 AGRYAKEVCDAIAAKCLTGRPKTVE------KAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG 160 (2013)
Q Consensus 87 ~~~~~~~v~~~LveK~l~~k~~~k~------~A~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG 160 (2013)
|-....+ +-+-.|+ |=... .+-.|++...|.| -.|-++..|+.+|..++.+-.
T Consensus 81 fls~a~~----~~~~~ft--pf~v~~a~si~~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p 139 (728)
T KOG4535|consen 81 FLSVAED----TSDHAFT--PFSVMIACSIRELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAP 139 (728)
T ss_pred HHHHHhc----cCCcCCC--chHHHHHHHHHHHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCc
Confidence 2111000 0000011 10111 1222333333322 356678888888888887644
Q ss_pred CCCcC---hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHH--hcC-CCCCCC
Q 000159 161 AKIIP---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELV--NVS-GTARPT 234 (2013)
Q Consensus 161 ~~~i~---~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~--k~~-~~~~P~ 234 (2013)
...+. +-.+.-++.++..|+|++||-.+..++..|. |.. +-++.+| ..|..... +.. .-..|.
T Consensus 140 ~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v---~t~-------~~~pei~-~~~~~~~s~~n~~~~h~s~~ 208 (728)
T KOG4535|consen 140 YDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV---STH-------APLPEVQ-LLLQQPCSSSNSATPHLSPP 208 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH---hcC-------CCCHHHH-HHhcCCCccccccCCCCCCh
Confidence 33322 2346778899999999999999888766554 221 1112221 11100000 000 000010
Q ss_pred ccchhhhhHhhhhhccccCCCCCCCCCCC--CCCCCCCCCCCCCCcccccccCcchhhh------hhhcc--CCHHHHHH
Q 000159 235 RKIRAEQDKELGQELISEDVGPGPSEEST--ADVPPEIDEYELVDPVDILTPLEKSGFW------EGVKA--TKWSERKD 304 (2013)
Q Consensus 235 R~~rs~~~~~~~~ea~~~~~g~~~~~~~~--~~~~~~iD~~dl~~~vdIl~kl~~~~f~------~~l~s--~kWkeR~e 304 (2013)
... ++.. ++++.+.. +.+.+...+--++.++--..-+++.+-+ ..+++ .---.|.|
T Consensus 209 ~~~-----~~l~---------~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle 274 (728)
T KOG4535|consen 209 DWW-----KKLP---------AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLE 274 (728)
T ss_pred HHH-----HhcC---------CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHH
Confidence 000 0000 01110000 0000111111122221111111211111 11111 22346889
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh--hhHhHHHHHHHHhccCc---
Q 000159 305 AVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG--SSRFLLPVLLEKLKEKK--- 379 (2013)
Q Consensus 305 aL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~--~~~~llp~LL~klkdkk--- 379 (2013)
+++-|..++..-.+...-+.++.+++.+.+.|.-..+-.-+.+|+..+..++.....| .-..+....+-..--.+
T Consensus 275 ~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~ 354 (728)
T KOG4535|consen 275 ALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLP 354 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCCh
Confidence 9888877764322333445677888888888999999999999999999988743321 11112212111111111
Q ss_pred --------HHHHHHHHHHHHHHHHhcCCChHh----HHHHHHHHh-hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000159 380 --------PTVAESLTQTLQAMHKAGCLNLVD----VVEDVKTSV-KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (2013)
Q Consensus 380 --------~~V~~aa~~aL~ai~~~~~~~l~~----il~~l~~~l-~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (2013)
.....++..++-.|.......+++ ..+....+. +|||--+|.+++..+.-.+-+..-..........
T Consensus 355 ~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~a 434 (728)
T KOG4535|consen 355 RALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADA 434 (728)
T ss_pred hhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHH
Confidence 112223333333332211112221 222333343 4777777777776665544433222211223444
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 000159 447 VPICMECLNDGTPEVRDAAFSVLA 470 (2013)
Q Consensus 447 ~p~l~k~l~Ds~~~VR~aA~~al~ 470 (2013)
...+...+.|+.=.+|..++=+++
T Consensus 435 a~~il~sl~d~~ln~r~Kaawtlg 458 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLG 458 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhh
Confidence 455556666666666666554443
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.71 E-value=3.8 Score=54.30 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=60.2
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCC
Q 000159 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (2013)
Q Consensus 938 lp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~ 1008 (2013)
=..+++||+|....+|.-|.+-+-.++..-.+..++..+..+|... .++.|.++...+.+..+.+.+..
T Consensus 352 r~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEkfaP~k 420 (866)
T KOG1062|consen 352 RSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESS--DEDFKADIASKIAELAEKFAPDK 420 (866)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcCCcc
Confidence 4688999999999999999999999999999999999999999855 57899999999888877776543
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.64 E-value=9.9 Score=48.44 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHh--hhcc-hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH---HHHHHHhhcCCh
Q 000159 344 EAIQAIGNLARGL--RTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVKNKVP 417 (2013)
Q Consensus 344 ~A~~~l~~La~~L--~~~f-~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il---~~l~~~l~~Knp 417 (2013)
.|-.+|..|+..+ |..| +..+..++=.+++.|..+....|++.-.++..+..- + ++++ ..|+.-++.+.|
T Consensus 40 ~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~---t-edvlm~tssiMkD~~~g~~ 115 (898)
T COG5240 40 SARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKL---T-EDVLMGTSSIMKDLNGGVP 115 (898)
T ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhc---c-hhhhHHHHHHHHhhccCCc
Confidence 3445666666655 5678 688999999999999999999999999999888653 1 3332 344555567777
Q ss_pred -HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHH
Q 000159 418 -LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (2013)
Q Consensus 418 -~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 466 (2013)
.+|-.++.-|.+.+..... ..+-..+..+.-|+.+.+|.+|.
T Consensus 116 ~~~kp~AiRsL~~Vid~~tv-------~~~er~l~~a~Vs~~~a~~saal 158 (898)
T COG5240 116 DDVKPMAIRSLFSVIDGETV-------YDFERYLNQAFVSTSMARRSAAL 158 (898)
T ss_pred cccccHHHHHHHHhcCcchh-------hhHHHHhhhhccccchhhhhhHH
Confidence 7888888888877764322 33445677788899999998875
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.42 Score=59.72 Aligned_cols=211 Identities=16% Similarity=0.139 Sum_probs=139.7
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~-~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
.+.+.+.+.+|+.|...+--+..+...+.+.. +..++++..+.....|++..++..||.+|+.++.++..+.-.|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 45556788999999988887877776555553 67889999999999999999999999999999999877777788888
Q ss_pred HHHHHHHhcc-CcHHHHHHHHHHHHHHHHh-cCCChHhH----HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---H
Q 000159 368 LPVLLEKLKE-KKPTVAESLTQTLQAMHKA-GCLNLVDV----VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---A 438 (2013)
Q Consensus 368 lp~LL~klkd-kk~~V~~aa~~aL~ai~~~-~~~~l~~i----l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---~ 438 (2013)
+-.++-.+-| -+..|.-.+..||..+... ....+..+ .-.+..-+++-++++|..+...++.+..-.+.. .
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 8877777755 3456666677777776654 11222222 222334556889999999988888766544322 2
Q ss_pred HHH-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHH
Q 000159 439 VLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (2013)
Q Consensus 439 l~~-~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~ 500 (2013)
+.. ..+.+.| +.-.++|++|.|-.|.+..+-+..--++-+....++++.-+..+..+++.+
T Consensus 381 Fte~v~k~~~~-lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fy 442 (533)
T KOG2032|consen 381 FTEQVKKRLAP-LLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFY 442 (533)
T ss_pred hHHHHHhcccc-ceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHH
Confidence 211 1123333 223479999999777776665544444434455555533233333444433
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.23 Score=61.92 Aligned_cols=191 Identities=17% Similarity=0.174 Sum_probs=133.1
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 858 ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~-~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
+.....+..|+.|....-.+.++... +.+.. ..+++++..|..+..|++..++..|+++++.++..+......|...
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~~--~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~ 299 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKRP--KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT 299 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhCc--ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH
Confidence 33455667899999988888877752 23332 2368999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHH-------HHHHHhcCCCChhhHHHHHHHHHHHhccCCC--
Q 000159 937 VLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPY-------VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-- 1006 (2013)
Q Consensus 937 llp~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl~~ll~~-------l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-- 1006 (2013)
++-.++..|-| .+..|.-.++.||..+......+.+-++ +.+.+.+. +++.|...+-.+.. +..+..
T Consensus 300 ~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~-L~~l~g~~ 376 (533)
T KOG2032|consen 300 QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGA-LAKLAGGG 376 (533)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHH-HHHHcCCC
Confidence 99888877765 4567888888899888887654443332 22334444 46778765544332 222221
Q ss_pred -CCChh----hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000159 1007 -FPDAA----HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (2013)
Q Consensus 1007 -~~~~~----~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~ 1053 (2013)
...+. .-..|++-.|+|+++-|-.|.+..+......++-+....++.
T Consensus 377 ~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 377 WEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred chhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 11222 234467778899999998888877776666666555555543
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.077 Score=59.06 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=98.8
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHh-ccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHH---HHHhChh
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---ASAMGPA 929 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~-a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~L---a~alg~~ 929 (2013)
+.+-|++++...+.--|.-|.+.+.+++.. +..+|.|-. .+|+..|+..|+-.|..|...+|++++.| ....|..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 446889999888877888899999999986 556777764 89999999999999999999999999999 7788999
Q ss_pred hHhhhhhHHHHHHH----H--hC-----CCcHHHHHHHHHHHHHHHHhcCchhhH
Q 000159 930 VEKSSKGVLSDILK----C--LG-----DNKKHMRECTLTVLDAWLAAVHLDKMV 973 (2013)
Q Consensus 930 ~~~~~~~llp~ll~----~--L~-----D~k~~Vr~aa~~aL~~i~~~~gl~~ll 973 (2013)
+-+|.++++|.+-- . ++ ..+..+++....+|..+-++.|-+.++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~ 172 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI 172 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence 99999999998762 1 22 245678899999999888888866543
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.018 Score=51.53 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000159 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963 (2013)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i 963 (2013)
+.|+..|+.+|+.++...+..+.+|...++|.++..|.|.+..||.+|..||..+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999888888899999999999999999999999999999998753
|
... |
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.25 E-value=3.9 Score=53.96 Aligned_cols=51 Identities=18% Similarity=0.052 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHhccCCCCCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000159 987 AEGRKDLFDWLSKQLTGLSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 987 p~~R~~~l~~L~~~l~~~~~~~~~~-~ll~pl~~~L~D~~~dVR~aA~~~L~~l~ 1040 (2013)
..+|.++...|++... . ...+. .+..-+..|+.|++-+||+.|..++..+-
T Consensus 480 ~ivRaaAv~alaKfg~--~-~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 480 AIVRAAAVSALAKFGA--Q-DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhHHHHHHHHHHHhc--C-CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 5678888887776541 1 12233 34444778999999999999999887765
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.25 E-value=5.2 Score=52.54 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=81.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhc-C
Q 000159 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD-A 983 (2013)
Q Consensus 905 ~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~-~ 983 (2013)
.|.|.++ -.+.-+..+. ..-+..+..++..++..|....-.||..+..-.-.++.+-....++..+..-+.. .
T Consensus 292 sdnnvkl--Ivldrl~~l~----~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~ 365 (948)
T KOG1058|consen 292 SDNNVKL--IVLDRLSELK----ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTH 365 (948)
T ss_pred cCcchhh--hhHHHHHHHh----hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcc
Confidence 4555443 2334444444 3345667788899999999999999999888888888877777777766655531 1
Q ss_pred C----CChhhHHHHHHHHHHHhccCCCCCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 984 K----LGAEGRKDLFDWLSKQLTGLSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 984 k----~~p~~R~~~l~~L~~~l~~~~~~~~~~-~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
+ -+-.=|+.++..+..+-.+.+ ++. ..++-++..+.|.|+..-...-..+...+..++
T Consensus 366 ~~e~d~~~~yRqlLiktih~cav~Fp---~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 366 NEESDDNGKYRQLLIKTIHACAVKFP---EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred ccccccchHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 0 022347888888876654433 344 444458888999988544443333333333333
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.12 E-value=26 Score=50.03 Aligned_cols=51 Identities=27% Similarity=0.279 Sum_probs=40.8
Q ss_pred hhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--cCchhhHHHHHHHHhcC
Q 000159 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVPYVTTALTDA 983 (2013)
Q Consensus 933 ~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~--~gl~~ll~~l~~~L~~~ 983 (2013)
.+..+++.+++++-|..-.+|..|++.+.-+++. +++-..+|.++..-.++
T Consensus 1336 i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL~Tdp 1388 (1692)
T KOG1020|consen 1336 IMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIALETDP 1388 (1692)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheeecCCh
Confidence 4567889999999999999999999999888876 45677788777655544
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=20 Score=48.36 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCC
Q 000159 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKL 985 (2013)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~ 985 (2013)
..|+..++-+++.++-+-| +.++.++|.+++-|.-+.. .||.-.+-++..++.+.. .+.++|.|...|.++
T Consensus 945 ~~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp-- 1018 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDP-- 1018 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCc--
Confidence 3477788888888887654 4566778888888865554 599999999999998874 689999999999988
Q ss_pred ChhhHHHHHHHHHHHhccCCCCCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 986 GAEGRKDLFDWLSKQLTGLSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 986 ~p~~R~~~l~~L~~~l~~~~~~~~~~-~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
.+.+|..++..|++.++.--. .+. .+.--++..|-|.+++||.-|..|+..+...=-
T Consensus 1019 ~~iVRrqt~ilL~rLLq~~~v--Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQFGIV--KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhhh--hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence 589999999999988763211 111 233346667899999999999999998876543
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.1 Score=57.09 Aligned_cols=145 Identities=16% Similarity=0.036 Sum_probs=93.7
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (2013)
+.++..+.+.+..+|..++..+... . .+-...|+..|+|.+..|+..|+.+++.+...
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r------~------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------- 177 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAH------R------HDPGPALEAALTHEDALVRAAALRALGELPRR---------- 177 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhh------c------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------
Confidence 4567778888999998888555431 1 22345677778899999999999999986632
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHH
Q 000159 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2013)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2013)
..+|.+...+.|.++.||.+|+.++..+ |-..-++.+....... +...+..+..++... .....+.
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~--------~~~~a~~ 243 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA--------GGPDAQA 243 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC--------CchhHHH
Confidence 3455677779999999999999888444 3334444444433322 223344444444321 1125556
Q ss_pred HHHhhcCCCChHHHHHHHHHHHH
Q 000159 1016 PASIAMTDKSSDVRKAAEACIVE 1038 (2013)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~L~~ 1038 (2013)
.|...+.|.. ||..+..+++.
T Consensus 244 ~L~~ll~d~~--vr~~a~~AlG~ 264 (410)
T TIGR02270 244 WLRELLQAAA--TRREALRAVGL 264 (410)
T ss_pred HHHHHhcChh--hHHHHHHHHHH
Confidence 6777777755 88887777764
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.46 Score=59.31 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=110.0
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (2013)
..+++.+.+.+|-+|..+...+..+- -.+.++.|...+.|.+..|+..|..+++.+. .+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 46778889999999999987754332 2678899999999999999999988655432 23
Q ss_pred hHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCC--------Ch--hhHHHHHHHHHHHhccC
Q 000159 936 GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL--------GA--EGRKDLFDWLSKQLTGL 1004 (2013)
Q Consensus 936 ~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~--------~p--~~R~~~l~~L~~~l~~~ 1004 (2013)
..++.++..|. |.+..||..+..+|..+...-. +..+...+.+... .+ .+|..+..-+...
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~---- 176 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL---- 176 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----
Confidence 56777888777 8999999999999987765444 3444555554320 01 2444444444321
Q ss_pred CCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
.....+.++...+.|...+||.+|..+|..+...
T Consensus 177 ----~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 177 ----GDPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred ----CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 2245566688899999999999999999887665
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.34 Score=62.39 Aligned_cols=206 Identities=16% Similarity=0.190 Sum_probs=131.7
Q ss_pred ccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhCh
Q 000159 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (2013)
Q Consensus 849 dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~ 928 (2013)
|+...+-.-++...++++-++|...++-+..++. .+..|....|..|...|..|+.|.-++|+.+|+.++..+-.--+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 3433344466788899999999999999988886 346666666888899999999999999999999988876532221
Q ss_pred hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCC
Q 000159 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (2013)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~ 1008 (2013)
+=.+. ..++-.++ -.|+.+.||.+|..++.- . ...+|.|.+--.+- +...|.-+...+...+ ... ..
T Consensus 160 ee~~v-~n~l~~li--qnDpS~EVRRaaLsnI~v--d----nsTlp~IveRarDV--~~anRrlvY~r~lpki-d~r-~l 226 (892)
T KOG2025|consen 160 EECPV-VNLLKDLI--QNDPSDEVRRAALSNISV--D----NSTLPCIVERARDV--SGANRRLVYERCLPKI-DLR-SL 226 (892)
T ss_pred CcccH-HHHHHHHH--hcCCcHHHHHHHHHhhcc--C----cccchhHHHHhhhh--hHHHHHHHHHHhhhhh-hhh-hh
Confidence 11121 12222222 269999999998665521 1 22345555544443 3456777776665554 111 12
Q ss_pred ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChH-----HHHHHHHHHH
Q 000159 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP-----ALALILERIK 1068 (2013)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~-----~~~~i~~~l~ 1068 (2013)
....-+.-+-..|+||.-+||.+++.++..=.-.+-+..+.+.+..|+-+ ..+.|++.++
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 23344444667999999999999999886422222233456677777643 3344555544
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.64 Score=50.07 Aligned_cols=110 Identities=15% Similarity=0.283 Sum_probs=82.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.||. ++-.+..++.. ++..-.+.+.+|++||+..|.+|+..||.++..+++.+|..|... .+.|+.
T Consensus 14 l~~~dw~----~ileicD~In~-----~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWE----AIQAFCEQINK-----EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHH----HHHHHHHHHHc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 4566885 44455555542 233347899999999999999999999999999999999999754 366888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 000159 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (2013)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L 980 (2013)
.+++.+.. ....|++-+...+..|.....-++-+......|
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~~L 131 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYDML 131 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 88888853 457899999999999998875333233333333
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.44 E-value=10 Score=51.55 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=65.5
Q ss_pred ccccccCcchhhhhhhccCCHHHHHHHHHHHHH---Hh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Q 000159 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTK---LA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR 354 (2013)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~---l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~ 354 (2013)
++|..++- ..-...+++++-..|.+||+-|.- ++ +.+...-.-.+...+.+..++.+.|.-++..|+.||..++.
T Consensus 798 v~iv~kIl-~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 798 VKIVLKIL-GRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHH-HHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34443443 233334688999999999998754 33 33322222344555667778889999999999999999997
Q ss_pred Hhhhcc-hhhhHhHHHHHHHHhccC
Q 000159 355 GLRTHF-SGSSRFLLPVLLEKLKEK 378 (2013)
Q Consensus 355 ~L~~~f-~~~~~~llp~LL~klkdk 378 (2013)
.-|.=. .++.+.++|.+-..|.+.
T Consensus 877 ~sgDFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 877 YSGDFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 655322 266777777776666553
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.26 Score=67.02 Aligned_cols=156 Identities=14% Similarity=0.143 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCCh
Q 000159 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGA 987 (2013)
Q Consensus 911 V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~k~~p 987 (2013)
-....+.++..++..||..+.+ +-..+|.++.++......+|.++..|+.++..... ...+++.+...+.+- .-
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~--~~ 868 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL--DK 868 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch--hh
Confidence 4556778888888889998888 77889999999999999999999999999998754 334455555555432 11
Q ss_pred hhHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhH-------HHHHhccCCh
Q 000159 988 EGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET-------IEKNLKDIQG 1057 (2013)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~-------~~~~l~~L~~ 1057 (2013)
..|+.....+-.++..... .+-..-+++|++.++.|....||.+|.+++..+...++.+. |.+.+-..+.
T Consensus 869 ~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke 948 (1549)
T KOG0392|consen 869 FVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKE 948 (1549)
T ss_pred HhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHH
Confidence 2333333333333332221 22334567789999999999999999999999999888654 3333333333
Q ss_pred HHHHHHHHHHHh
Q 000159 1058 PALALILERIKL 1069 (2013)
Q Consensus 1058 ~~~~~i~~~l~k 1069 (2013)
..++.|+.+++.
T Consensus 949 ~erkFLeqlldp 960 (1549)
T KOG0392|consen 949 EERKFLEQLLDP 960 (1549)
T ss_pred HHHHHHHHhcCc
Confidence 444555555443
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.57 Score=50.85 Aligned_cols=99 Identities=20% Similarity=0.325 Sum_probs=78.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+...||. .+-.|...+. .. +..-.+.+.+|++||...|.+|+..||.++..+++.+|..|... .+.|+.
T Consensus 13 l~~~dw~----~il~icD~I~---~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWG----LILDVCDKVK---SD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHH----HHHHHHHHHh---cC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 3456895 3334455543 11 23347899999999999999999999999999999999998754 466888
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000159 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
.+.+.+.+ ....|++-+...+..|.....-
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 88888888 7788999999999999988763
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.19 E-value=21 Score=48.51 Aligned_cols=166 Identities=19% Similarity=0.124 Sum_probs=97.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHH-HHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~-~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (2013)
+.+++-+.|.+|+..+-..+..+ +++..++. .++... -.|..+....--.+-..++.= + .-+...+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G------~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~-P---~~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG------EDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLK-P---ELALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccC-H---HHHHHHHHH
Confidence 67888999999988887666522 22344433 333333 333434333323333333221 1 345566788
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhh--hHHHHH
Q 000159 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH--LLKPAS 1018 (2013)
Q Consensus 941 ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~--ll~pl~ 1018 (2013)
+.+-|+|.++.+|..|+.+|..+-..-=++.+++.|...+.++ +|.+|..+.-.+.+.+.--.. ...+ .+..+.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld~~--l~~~~g~~~~l~ 172 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLDKD--LYHELGLIDILK 172 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcCHh--hhhcccHHHHHH
Confidence 8889999999999998888876532211234444555556565 578888888877776642211 0111 222233
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1019 IAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
..+.|.++.|-.+|..+|..+..-
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchh
Confidence 455788888888887777666543
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.071 Score=41.72 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1014 LKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
++.+.++++|++++||.+|..+|+.+.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 55688999999999999999999998875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.4 Score=60.95 Aligned_cols=119 Identities=20% Similarity=0.115 Sum_probs=88.1
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH
Q 000159 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (2013)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il 405 (2013)
.+..|...+.|.+..|...+.+.|+.+- -....+.|+..+++..+.||.++..++...- .+-.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------cChH
Confidence 4778888888888888888888887642 3456677888889999999987765554321 1234
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 406 ~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
+.+...|++.+|.||.+++..|..+=. ...+|.|..++.|.+++||.+|..++..+
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 667777889999999999888765311 33456677889999999999999998543
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.86 Score=55.58 Aligned_cols=165 Identities=20% Similarity=0.224 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHhccccCCCCC----hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh
Q 000159 870 RLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (2013)
Q Consensus 870 R~eale~l~~il~~a~~~I~~~~----~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L 945 (2013)
-..|+|-.+-|.. .+.+.. +.=....|...+.-+.-+|+-.-++++....--+|+.+.+.++.++..++-.+
T Consensus 72 H~KaLevY~~IF~----~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGL 147 (307)
T PF04118_consen 72 HQKALEVYEYIFE----RIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGL 147 (307)
T ss_pred HHHHHHHHHHHHH----hcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccc
Confidence 3446666665554 233321 12234555666788888999999999999988999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCC------C--------CCChh
Q 000159 946 GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDAA 1011 (2013)
Q Consensus 946 ~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~------~--------~~~~~ 1011 (2013)
-|....+.+.+...++.+...+|-+-+...++..+.+ +|..|..++.|+.+.++... . .++..
T Consensus 148 ede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (307)
T PF04118_consen 148 EDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPG 224 (307)
T ss_pred ccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCcc
Confidence 9999999999999999999999988888888888764 47899999999999998866 1 12334
Q ss_pred hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 1012 ~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
-++..+..||+|.+-=|+..+-..| ..++.
T Consensus 225 Llv~al~~~L~D~~iLVqR~~LDlL---l~~~P 254 (307)
T PF04118_consen 225 LLVRALCACLEDENILVQRGFLDLL---LSHFP 254 (307)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHH---HHhCC
Confidence 4566688899999888887765544 55554
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.81 Score=49.09 Aligned_cols=100 Identities=21% Similarity=0.348 Sum_probs=78.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh-hh-hHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SK-GVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~-~llp 939 (2013)
+.+.||. ++-+|..+++. . +..-.+.+.+|+++|+..|.+++..|+.++..+++..|..|... .. .++-
T Consensus 13 ~~~~D~~----~il~icd~I~~--~---~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWA----LNLELCDLINL--K---PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHH----HHHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 3556885 45556666642 1 33347899999999999999999999999999999999998653 33 5777
Q ss_pred HHHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000159 940 DILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (2013)
Q Consensus 940 ~ll~~L~D---~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2013)
.+++.+.. ....|+.-+...+..|....+-+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777765 46679999999999999988653
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.35 Score=65.84 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHH
Q 000159 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (2013)
Q Consensus 300 keR~eaL~~L~~l~~--~pki~~~~~~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 374 (2013)
-+|+.|...|..+.. ++.+. ..|..+-..|.+.+. |.|- -....+..+..++..++..+.+ .-..+|.++..
T Consensus 748 ~errgael~L~~l~~~fg~sl~-~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLA-AKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHH-HhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 467877777766653 22221 224445455555554 3331 3445567777778778887878 78899999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhcCC-ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHH
Q 000159 375 LKEKKPTVAESLTQTLQAMHKAGCL-NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (2013)
Q Consensus 375 lkdkk~~V~~aa~~aL~ai~~~~~~-~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 453 (2013)
....-..+|-++..|+..+++..|. ....+++.+..-++.-.--+|++...-+..++.......+.++..-+++.+..+
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 9999999999999999999986221 122344555555554445566666555555555444334556778899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCchh-------HHHHHhhccHHHHHHHHHHHhc
Q 000159 454 LNDGTPEVRDAAFSVLAAIAKSVGMRP-------LERSIEKLDDVRRNKLSEMIAG 502 (2013)
Q Consensus 454 l~Ds~~~VR~aA~~al~~l~~~~Ge~~-------~~~~l~~Ld~~~~kki~e~~~~ 502 (2013)
+.|....||++|.+++..+..+++.+. +-..+-.....-++.|+..++.
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldp 960 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDP 960 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCc
Confidence 999999999999999999999988542 2223333333445556655543
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.75 E-value=14 Score=48.25 Aligned_cols=184 Identities=20% Similarity=0.244 Sum_probs=122.0
Q ss_pred CCCCCcHhHHHHHHHHHHHHHHhhChhHHh-hhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000159 767 GLQSSAAATRNATIKLLGALHKFVGPDIKG-FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2013)
Q Consensus 767 gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~-~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2013)
||+.+|.+||..|..++..+|-..||+... -++ ..+++.|.
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD-------~i~~kQf~------------------------------- 223 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMD-------SIIQKQFE------------------------------- 223 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccHHHHH-------HHHHHHHH-------------------------------
Confidence 489999999999999999999888887531 111 11222222
Q ss_pred CCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-cchhHHHHHHHHHHHHHHHH
Q 000159 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVAS 924 (2013)
Q Consensus 846 pr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~ 924 (2013)
.+++.++|.--.+|-+|++.+.++...-=--|.++...+++..+..-+ .|+-..|+..+.+.+..|+-
T Consensus 224 -----------~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~ 292 (1005)
T KOG1949|consen 224 -----------ELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD 292 (1005)
T ss_pred -----------HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc
Confidence 344556666677899999999888864322344454556665555544 68888999999998888763
Q ss_pred HhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--cCchhhHH--HHHHHHhcCCCChhhHHHHHHHHHHH
Q 000159 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2013)
Q Consensus 925 alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~--~gl~~ll~--~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2013)
.+...+.++.++|.+=-.|.|+...||-|+...|-.+-.+ ...-.+++ .+..-|...+ .+..|.-+...+..+
T Consensus 293 --np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~-~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 293 --NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDS-RPVSRRLVSLIFNSF 369 (1005)
T ss_pred --CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccc-cHHHHHHHHHHHHhh
Confidence 3445567888999888999999999999998888765432 23333433 4555555443 244444444444444
Q ss_pred hc
Q 000159 1001 LT 1002 (2013)
Q Consensus 1001 l~ 1002 (2013)
|+
T Consensus 370 lP 371 (1005)
T KOG1949|consen 370 LP 371 (1005)
T ss_pred cC
Confidence 43
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=93.51 E-value=13 Score=44.76 Aligned_cols=186 Identities=12% Similarity=0.153 Sum_probs=126.5
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc--chhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHH
Q 000159 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (2013)
Q Consensus 866 ~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~--DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~ 943 (2013)
+|..=..++..+..++. . +.+.+.....++..+.+... .--...|....+++..+...-...+......++..+++
T Consensus 53 D~~~~~~~l~gl~~L~~-~-~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 53 DHACVQPALKGLLALVK-M-KNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQ 130 (262)
T ss_pred cHhhHHHHHHHHHHHHh-C-cCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHH
Confidence 44444455667777774 2 44554444566666655332 23456778888888888877666666666778888888
Q ss_pred Hh-CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-------cC-CCCh--hhHHHHHHHHHHHhccCCCCCChhh
Q 000159 944 CL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-------DA-KLGA--EGRKDLFDWLSKQLTGLSGFPDAAH 1012 (2013)
Q Consensus 944 ~L-~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~-------~~-k~~p--~~R~~~l~~L~~~l~~~~~~~~~~~ 1012 (2013)
.. +++.|.----+..-+..++....++.+.+.+.+.+. .+ ..+| -.|.++-.-|..++... +.+.+
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~---~~fa~ 207 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST---PLFAP 207 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc---HhhHH
Confidence 76 456665555566666777777777777777666654 11 1012 35677777787777633 34555
Q ss_pred hHHH-HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCC
Q 000159 1013 LLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (2013)
Q Consensus 1013 ll~p-l~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~ 1056 (2013)
.+-| ++..|....+.|+.-+-+.|......+|.+.+.++...+=
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw 252 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIW 252 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 5555 8889999999999999999999999999999998876553
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.37 E-value=2.2 Score=57.42 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=112.7
Q ss_pred hccCCHHHHHHHHHHHHH-HhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHH
Q 000159 294 VKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~-l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (2013)
+.+++=++|++|++.+.+ +..+. |...++.-+.|-+.--|.-+....---+...++.= ...+...++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~-----dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~----P~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE-----DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK----PELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHH
Confidence 677888899999998755 44432 35666665555555444444443333333333321 145778899999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-HHHHHH
Q 000159 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 451 (2013)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~p~l~ 451 (2013)
+-|.|+++.+|-.|..++..+=.. -=+..+++.|..++.|+++.||..++-.+..+++... .. +... .+..+.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l---~~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DL---YHELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hh---hhcccHHHHHH
Confidence 999999999998776666544221 1124456677788899999999999999998886422 11 1233 456677
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 452 ECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 452 k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
.++.|++|.|-.+|..+|..+..-
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchh
Confidence 788999999988888888766543
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.8 Score=54.93 Aligned_cols=202 Identities=18% Similarity=0.198 Sum_probs=129.4
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
+-..++.+.++++-++|+..++-+.-+.. +-+.|....|.-|...|..|+-|..+.|+.+|+.++..+-.--+.+ +.+
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~ 169 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENR 169 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHH
Confidence 33466788899999999999998887775 3345555556778888889999999999999999998876443333 233
Q ss_pred hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC--CChh
Q 000159 934 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAA 1011 (2013)
Q Consensus 934 ~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~ 1011 (2013)
...++-.++ -.|....||.+|. ++-.+..-. .|.|.+-..+- +..-|..+...+ ++.++.. ....
T Consensus 170 ~~n~l~~~v--qnDPS~EVRr~al--lni~vdnsT----~p~IlERarDv--~~anRr~vY~r~---Lp~iGd~~~lsi~ 236 (885)
T COG5218 170 IVNLLKDIV--QNDPSDEVRRLAL--LNISVDNST----YPCILERARDV--SGANRRMVYERC---LPRIGDLKSLSID 236 (885)
T ss_pred HHHHHHHHH--hcCcHHHHHHHHH--HHeeeCCCc----chhHHHHhhhh--hHHHHHHHHHHH---hhhhcchhhcccc
Confidence 333333332 3688889999973 332333323 34444443332 234465555443 4444331 1223
Q ss_pred hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhc
Q 000159 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (2013)
Q Consensus 1012 ~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~ 1070 (2013)
..+.-+--.|.|+.-+||+++..++..-...--+-.+...+..|+-+..+.+..++++.
T Consensus 237 kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~ 295 (885)
T COG5218 237 KRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGV 295 (885)
T ss_pred ceehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33334445899999999999998887544443344566677888877777666666664
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.3 Score=47.92 Aligned_cols=101 Identities=20% Similarity=0.351 Sum_probs=77.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.+|. .+-.+.++++. . +..-.+.+.+|++||...|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 17 l~~~dw~----~ileicD~In~--~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~ 87 (142)
T cd03569 17 LGEPDLA----SILEICDMIRS--K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD 87 (142)
T ss_pred cCccCHH----HHHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 3456885 34445555542 1 22247899999999999999999999999999999999998753 455777
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchh
Q 000159 940 DILKCLG-DNKKHMRECTLTVLDAWLAAVHLDK 971 (2013)
Q Consensus 940 ~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~~ 971 (2013)
.+.+.+. .....|++-+...+..|.....-+.
T Consensus 88 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (142)
T cd03569 88 ELKDLIKTTKNEEVRQKILELIQAWALAFRNKP 120 (142)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 7777776 4566799999999999998876443
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.1 Score=48.03 Aligned_cols=98 Identities=21% Similarity=0.401 Sum_probs=75.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.+|. .+-.+.++++ .. +..-.+.+.+|++||...|.+++..|+.++..+++.+|..|... .+.|+.
T Consensus 13 l~~~dw~----~~l~icD~i~---~~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWE----LILEICDLIN---ST--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHH----HHHHHHHHHh---CC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 4566885 3344555553 22 23347899999999999999999999999999999999999754 345777
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHHHHhcC
Q 000159 940 DILKCLGDNKK--HMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 940 ~ll~~L~D~k~--~Vr~aa~~aL~~i~~~~g 968 (2013)
.+.+.+.++.. .|+..+...+..|.....
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 77777766443 399999999999999875
|
Unpublished observations. Domain of unknown function. |
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.51 Score=51.10 Aligned_cols=108 Identities=29% Similarity=0.510 Sum_probs=78.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.+|. ++-.|.++++. . +..-.+.+.+|+++|...|.+++..||.++..+++..|..|... .+.|+.
T Consensus 18 ~~~~Dw~----~~l~icD~i~~---~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~ 88 (140)
T PF00790_consen 18 LPSPDWS----LILEICDLINS---S--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLD 88 (140)
T ss_dssp SSS--HH----HHHHHHHHHHT---S--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCCHH----HHHHHHHHHHc---C--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHH
Confidence 4556884 34445555542 2 33348899999999999999999999999999999999999754 355777
Q ss_pred HHHHHhCCCcH--H--HHHHHHHHHHHHHHhcCchhhHHHHHH
Q 000159 940 DILKCLGDNKK--H--MRECTLTVLDAWLAAVHLDKMVPYVTT 978 (2013)
Q Consensus 940 ~ll~~L~D~k~--~--Vr~aa~~aL~~i~~~~gl~~ll~~l~~ 978 (2013)
.+.+.+.++.. . |++.+...|..|....+-+.=++.+.+
T Consensus 89 ~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~ 131 (140)
T PF00790_consen 89 ELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQD 131 (140)
T ss_dssp HHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHH
T ss_pred HHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHH
Confidence 77776665443 2 899999999999999864443444433
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.89 E-value=29 Score=45.72 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=84.3
Q ss_pred ChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCch
Q 000159 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLD 970 (2013)
Q Consensus 892 ~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2013)
.+..-+..|.+.|.+...+++-.|++.+..|+.. +... ..++.-.-.++..|+ +..-.||+-|..-|-+|+..-...
T Consensus 326 ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~-davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak 403 (938)
T KOG1077|consen 326 LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSI-DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK 403 (938)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchH-HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH
Confidence 3455666777778888888999999988888866 2222 234444777888898 899999999999999999998889
Q ss_pred hhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC
Q 000159 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (2013)
Q Consensus 971 ~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2013)
.++..+..+|.+. .+..|.++.--++-.-+++.+
T Consensus 404 ~IV~elLqYL~tA--d~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 404 QIVAELLQYLETA--DYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhcC
Confidence 9999999999876 467898877665544344433
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.81 E-value=35 Score=45.09 Aligned_cols=199 Identities=15% Similarity=0.125 Sum_probs=120.6
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCCCc--C-hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChH
Q 000159 138 KNKVAKAVVPAIDVMFQALSEFGAKII--P-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRD 214 (2013)
Q Consensus 138 ~~KnpKv~~~~l~~L~~~l~~fG~~~i--~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~ 214 (2013)
-.|++-+..-.+..+..++..|...-. + +.+++.++.+..+..|++||-....++.-+.-..+. +.+
T Consensus 52 vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e--idd-------- 121 (892)
T KOG2025|consen 52 VKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE--IDD-------- 121 (892)
T ss_pred eccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc--cCH--------
Confidence 467777777777888777777664322 1 457889999999999999998876665444332221 112
Q ss_pred HHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhh
Q 000159 215 TMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV 294 (2013)
Q Consensus 215 ~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l 294 (2013)
+++.++. ..+..++
T Consensus 122 -----------------------------------------------------------------~vfn~l~-e~l~~Rl 135 (892)
T KOG2025|consen 122 -----------------------------------------------------------------DVFNKLN-EKLLIRL 135 (892)
T ss_pred -----------------------------------------------------------------HHHHHHH-HHHHHHH
Confidence 2333332 3444555
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHH
Q 000159 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~ 373 (2013)
.+..-..|.+|+..|..+-..++ ++=-+++..++..|. |++.-|++.|+-+|..= ...+|-+++
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~~---dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vd------------nsTlp~Ive 200 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDPK---DEECPVVNLLKDLIQNDPSDEVRRAALSNISVD------------NSTLPCIVE 200 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhhccC------------cccchhHHH
Confidence 55555667888877776653222 122356777777787 99999999888777432 245677888
Q ss_pred HhccCcHHHHHHHHHH-HHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHH
Q 000159 374 KLKEKKPTVAESLTQT-LQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (2013)
Q Consensus 374 klkdkk~~V~~aa~~a-L~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~ 428 (2013)
+.+|=+..+|.-+-+- |-.+ ..-..+.+.-+-.+--|+.++.-.||.++...|.
T Consensus 201 RarDV~~anRrlvY~r~lpki-d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il 255 (892)
T KOG2025|consen 201 RARDVSGANRRLVYERCLPKI-DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAIL 255 (892)
T ss_pred HhhhhhHHHHHHHHHHhhhhh-hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 8888777766543322 2222 1101333333344445666666666666555443
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.60 E-value=5 Score=47.98 Aligned_cols=302 Identities=16% Similarity=0.127 Sum_probs=167.4
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHh-ccccCCCCChhhHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~-a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
|.+...+-+.+-.....|+-++++++.. .++.|++-.-..+++-|...+ .-.+..+.-.|.=++..++.+....-+-.
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 4677777788888889999999999973 455666643344555666656 34455667778778888886654321111
Q ss_pred h-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh-cCch------hhHHHHHHHHhcCCCChhhH-HHHHHHHHHHhccC
Q 000159 934 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAA-VHLD------KMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGL 1004 (2013)
Q Consensus 934 ~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~-~gl~------~ll~~l~~~L~~~k~~p~~R-~~~l~~L~~~l~~~ 1004 (2013)
+ -.-+|.++..|.++...||+.+.=+|+.++.- .++. ..++.+...|.+.+ +++. ..-+.|....+..-
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCC
Confidence 1 13579999999999999999999999877632 1211 12333444444332 2111 23345544444322
Q ss_pred C-CCCCh---hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCCCCCCCCCC
Q 000159 1005 S-GFPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (2013)
Q Consensus 1005 ~-~~~~~---~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~ 1080 (2013)
. +.+++ ...++.+.+.+.-++++|-.-|.-++..+... ..+.+... |+......+.+.+-....
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg-~~E~i~av---ld~g~~~RLvElLs~~sa-------- 299 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG-PNEKIQAV---LDVGIPGRLVELLSHESA-------- 299 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC-cHHHHHHH---HhcCCcHHHHHHhcCccc--------
Confidence 2 23343 44455577788888888877665554433211 11122211 111111123333211100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhh---------cccCCCChHHHhhhhhcccc
Q 000159 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL---------LNVKDSNKEDRERMVVRRFK 1151 (2013)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~k~~R~~~~~~k~~ 1151 (2013)
.+.+++.|+.. ...+ +.+.+++.+ +.+..+.|+ ++|+. .=|.
T Consensus 300 -------------~iqtPalR~vG--NIVT------------G~D~QTqviI~~G~L~a~~~lLs~~ke-~irKE-aCWT 350 (526)
T COG5064 300 -------------KIQTPALRSVG--NIVT------------GSDDQTQVIINCGALKAFRSLLSSPKE-NIRKE-ACWT 350 (526)
T ss_pred -------------cccCHHHHhhc--Ceee------------cCccceehheecccHHHHHHHhcChhh-hhhhh-hhee
Confidence 00111111100 0000 011222221 223333333 55432 3487
Q ss_pred ccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhccc
Q 000159 1152 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200 (2013)
Q Consensus 1152 f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~ 1200 (2013)
...-+....|+.+.-|..-+-+-|+..|-+.||+-+.+|.=.+.....+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7766667778888888888888899999999999999988777766544
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.46 E-value=29 Score=45.69 Aligned_cols=295 Identities=17% Similarity=0.165 Sum_probs=168.9
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcCCChH
Q 000159 106 RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQN 183 (2013)
Q Consensus 106 k~~~k~~A~~~ll~~~E~~~~~~v~~~L~~~~~--~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~d~~ 183 (2013)
++.-.-.|..|+-.+-+.+-.+.+.+.+-+.+- .--+=|...+-.+|-.+++.+. ..+++......+..+|+|.+=+
T Consensus 124 n~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~sp-Dl~~~~~W~~riv~LL~D~~~g 202 (938)
T KOG1077|consen 124 NPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSP-DLVNPGEWAQRIVHLLDDQHMG 202 (938)
T ss_pred CcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCc-cccChhhHHHHHHHHhCccccc
Confidence 444455666666655555545555555544432 1223344455556666666643 4677778888999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC---------CCC---CccchhhhhHhhhhhccc
Q 000159 184 VRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT---------ARP---TRKIRAEQDKELGQELIS 251 (2013)
Q Consensus 184 VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~---------~~P---~R~~rs~~~~~~~~ea~~ 251 (2013)
|-.++..++..|.++..+. .+.- + +-++..|..-.-...-. +.| +..+|--|.- |.
T Consensus 203 v~ta~~sLi~~lvk~~p~~-yk~~----~-~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~------p~ 270 (938)
T KOG1077|consen 203 VVTAATSLIEALVKKNPES-YKTC----L-PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY------PT 270 (938)
T ss_pred eeeehHHHHHHHHHcCCHH-Hhhh----H-HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC------CC
Confidence 9999999998888887653 2221 1 22344443322111100 111 0111211110 00
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHH---HHHHHHHHhcCCCCCCCChHHHHH
Q 000159 252 EDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKD---AVAELTKLASTKRIAPGDFTEVCR 328 (2013)
Q Consensus 252 ~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~e---aL~~L~~l~~~pki~~~~~~~l~~ 328 (2013)
. .+.+. -.--.+.. ..|+.|.. +.-.++|-+.+-. .|-+...++.+-.-.+.-+..-+.
T Consensus 271 ~--~D~~~---------r~~l~evl--~~iLnk~~-----~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~ 332 (938)
T KOG1077|consen 271 P--EDPST---------RARLNEVL--ERILNKAQ-----EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVN 332 (938)
T ss_pred C--CCchH---------HHHHHHHH--HHHHhccc-----cCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 0 00000 00000000 02222221 1123444444432 222233333332233345667777
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHhhhcch-hhhHhHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCChHhHHH
Q 000159 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVVE 406 (2013)
Q Consensus 329 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klk-dkk~~V~~aa~~aL~ai~~~~~~~l~~il~ 406 (2013)
.|.+.|.+...+++..|+..+..|+.. .|. ..++.-...++..++ |+...||.-+...|-+++.. ....+|++
T Consensus 333 ~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~IV~ 407 (938)
T KOG1077|consen 333 QLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVA 407 (938)
T ss_pred HHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHHHH
Confidence 888888866666888887777776654 443 234555778888998 89999999999999888875 56789999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000159 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (2013)
Q Consensus 407 ~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (2013)
+++..+.+-.+.+|++...=++.+.++...
T Consensus 408 elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 408 ELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999988777776666543
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.76 Score=61.15 Aligned_cols=146 Identities=17% Similarity=0.139 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhh----hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000159 323 FTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLR----THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (2013)
Q Consensus 323 ~~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~----~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~ 396 (2013)
|+++++.|...+. +...+ +..+..|+..++ .-.-|....++|-||+.+.-....||-++..++..+...
T Consensus 865 F~~ivP~l~~~~~t~~~~~K-----~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQK-----HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHhhHHHHHHHhccCCccch-----hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 5666666666554 11111 233344444443 124578889999999999999999999998998876654
Q ss_pred -c---CCChHhHHHHHHHHh-hcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000159 397 -G---CLNLVDVVEDVKTSV-KNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (2013)
Q Consensus 397 -~---~~~l~~il~~l~~~l-~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al 469 (2013)
+ +.+++.++|.++.-- .++| -.||..+++-|..+.+..|...+..+-+.++.++.++|+|...-||+.|..+=
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1 234566777776533 3554 57899999999988777787777778899999999999999999999999876
Q ss_pred HHHH
Q 000159 470 AAIA 473 (2013)
Q Consensus 470 ~~l~ 473 (2013)
...+
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 5543
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.90 E-value=2.1 Score=51.02 Aligned_cols=303 Identities=14% Similarity=0.128 Sum_probs=163.6
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhc--cCcchHH-----HHHHHHHhcCCCCcccHHH--HHHHHHHHHHHHHHHc
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLDQSV-----EILVRLVCMLPGWSEKNVQ--VQQQVIEVINYLAATA 674 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~--~~~~~~~-----~~lv~~L~~~pgl~DsN~q--V~~~~Le~l~~l~~~~ 674 (2013)
+.+.++|.|.+....+.|+-++.+++... .+.+... +-++.++ |.+.. ..-.+-=+++.++...
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm-------~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFM-------DEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHH-------HhcchhHHHHHHHHHHhhhccCc
Confidence 78889999999999999999999998652 2332211 2222222 21111 1111111223333221
Q ss_pred CCCchhhH-HHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhC--hhHH-----HHHHHHHhhhCCC-hhHHHHHHHHHH
Q 000159 675 TKFPKKCV-VLCLLGISERVADI--KTRAHAMKCLTTFSEAVG--PGFI-----FERLYKIMKDHKN-PKVLSEGILWMV 743 (2013)
Q Consensus 675 ~~~~~~~~-~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~--~~~V-----l~~L~~~l~~~Kn-pKv~~~~l~~L~ 743 (2013)
.+-++-.+ ...+|.++.-|.++ -+|+++.=+|..++.-.. -++| ++-++..+.+++. -+...-+-..|+
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS 226 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS 226 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence 11111100 12466677666664 478888777777654211 1233 3334443322222 233334444566
Q ss_pred HHHHHhCCC--CCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh-hhccHHHHHHHHHHHhhCCCCC
Q 000159 744 SAVEDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKNPFEG 820 (2013)
Q Consensus 744 ~li~~fG~~--~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~ef~k~~~~~ 820 (2013)
++...-... --++...++.+.++ +-..+++|-.-|.-.+.+|.....+.+...+ ..+++.+.+.|..+-.++..
T Consensus 227 NlcRGknP~P~w~~isqalpiL~KL-iys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt-- 303 (526)
T COG5064 227 NLCRGKNPPPDWSNISQALPILAKL-IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT-- 303 (526)
T ss_pred HhhCCCCCCCchHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC--
Confidence 665422211 12356677888888 8888998888887777766543333344444 45566666666665444421
Q ss_pred CCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHH
Q 000159 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900 (2013)
Q Consensus 821 ~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L 900 (2013)
| ..|-+- .- -.|.|.-..+-|-.-..+.|...+++++-.+|+||--.+..|-.+....|+.-.-.+|++.|
T Consensus 304 P--alR~vG-NI------VTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpL 374 (526)
T COG5064 304 P--ALRSVG-NI------VTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPL 374 (526)
T ss_pred H--HHHhhc-Ce------eecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHH
Confidence 1 112110 00 01122222222322334567777888888999999777766654322233332225688888
Q ss_pred HhcccchhHHHHHHHHHHHHHHHHH
Q 000159 901 RGRLYDSNKNLVMATLITLGAVASA 925 (2013)
Q Consensus 901 ~~rL~DsN~~V~~~Al~~l~~La~a 925 (2013)
...|.-..-.+...||=.+.....+
T Consensus 375 i~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 375 IHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8999888888999998877765543
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=91.90 E-value=4.9 Score=49.18 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=111.6
Q ss_pred ccCCHHHHHHHHHHHHHHhc--CCCCCC-CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhc-chhhhHhHHH
Q 000159 295 KATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLP 369 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~--~pki~~-~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp 369 (2013)
..++|.+-...|..|.+.++ .+.+.- ..=..+.+.|.+++. ..-.-|-..|+++.+.+.+.++.+ +........|
T Consensus 21 ~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~ 100 (307)
T PF04118_consen 21 SSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSP 100 (307)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHH
Confidence 46999999999999988776 333322 334578899999998 888889999999999999888754 3444444444
Q ss_pred HHHHHhccCcHHHHH-----------------------------------------HHHHHHHHHHHhcCCChHhHHHHH
Q 000159 370 VLLEKLKEKKPTVAE-----------------------------------------SLTQTLQAMHKAGCLNLVDVVEDV 408 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~-----------------------------------------aa~~aL~ai~~~~~~~l~~il~~l 408 (2013)
+|+.-+.-....|+- .+...++.+... ++-+-+...+
T Consensus 101 GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~--v~~~~F~~~l 178 (307)
T PF04118_consen 101 GLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEA--VGDKYFWQCL 178 (307)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHh--cChhHHHHHH
Confidence 444444444444433 333333333221 2222222222
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHhcC-----------hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000159 409 KTSVKNKVPLVRSLTLNWVTFCIETSS-----------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (2013)
Q Consensus 409 ~~~l~~Knp~vR~~~l~~L~~~l~~~~-----------~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~ 471 (2013)
..++- .+|.+|..++.|+.+-+.... ...+...-.-++.++..+++|.+--|+..+...|..
T Consensus 179 wl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 179 WLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 22222 578999999999988776543 111122235688899999999999998877776653
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.8 Score=51.88 Aligned_cols=187 Identities=13% Similarity=0.138 Sum_probs=114.5
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
+.+.|++.+.|.+-|++..|--.++.+...- ..+.+-.-..-++.|.+.|.|.-...+....-||..|+..-+...--.
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 5568888899999999988888888776431 111111001123456666788888888888889988887655542211
Q ss_pred hhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCC
Q 000159 934 SKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (2013)
Q Consensus 934 ~~~llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~g--l-----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~ 1005 (2013)
=..|+.+++..|.-... .+.=+|..+|..++.+.. . ..-+|.+.+.+.+.. ..++.++-..++..--.-.
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p--vsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP--VSVQSEISACIAQLALNDN 408 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHhccc
Confidence 12466677776654333 366677788887776431 1 223456666666653 4566665555543211111
Q ss_pred CCCCh--hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc
Q 000159 1006 GFPDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (2013)
Q Consensus 1006 ~~~~~--~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~ 1043 (2013)
....+ .-+++.++..+.|.+.+||.+|.++|..|...+
T Consensus 409 ~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 11111 234555777889999999999999998775443
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.78 E-value=26 Score=50.43 Aligned_cols=236 Identities=15% Similarity=0.124 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChh------hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHH
Q 000159 663 VIEVINYLAATATKFPKKCVVLCLLGISERVADIK------TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 736 (2013)
Q Consensus 663 ~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K------~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~ 736 (2013)
.++++..++...-.. -..+|..|+.+++.+. -+..|..++..++.+..+ .+.+.+...+...++ ...
T Consensus 164 ~~~i~~~li~e~d~v----~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~-~i~~f~~~~~~~~~s--~~~ 236 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDTV----QSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLED-TIANFLNSCLTEYKS--RQS 236 (1266)
T ss_pred HHHHHHHHHHhhccc----hHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhch-hHHHHHHHHHhhccc--ccc
Confidence 666666666543222 2334555556655532 244455555555554433 223333333322111 111
Q ss_pred HHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhh
Q 000159 737 EGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (2013)
Q Consensus 737 ~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k 815 (2013)
..-.-.+++|-+.-.-.. -+-.+++.+..- |.+.+-.+|-.|..++|.|+...+.-+. +
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l~----~--------------- 296 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQLS----E--------------- 296 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhhc----c---------------
Confidence 111122233322211000 123567777665 8889999999999999999854432110 0
Q ss_pred CCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh
Q 000159 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895 (2013)
Q Consensus 816 ~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~e 895 (2013)
.. .-+-..|+..+.|..-.+|.+.++....++.. ++.+... ..
T Consensus 297 ----------------------------~~------~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~~--~~ 339 (1266)
T KOG1525|consen 297 ----------------------------TY------DDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAKA--ST 339 (1266)
T ss_pred ----------------------------cc------hHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-CchhhhH--HH
Confidence 00 01335788899999999999999999988863 2222211 34
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000159 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (2013)
Q Consensus 896 L~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~ 966 (2013)
+..+|+.+..|-+.+++...+.....++ .-.+ .+...++..+.+++.|++..||..|+..|..+.++
T Consensus 340 ~~~~l~~~~~D~~~rir~~v~i~~~~v~---~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 340 ILLALRERDLDEDVRVRTQVVIVACDVM---KFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHhhcCChhhhheeeEEEEEeehh---Hhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 5666777777877776654433221111 1111 23333777888899999999999999999999985
|
|
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.4 Score=45.82 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh--HHHHHHH-----H
Q 000159 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILK-----C 944 (2013)
Q Consensus 872 eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~-----~ 944 (2013)
..+..|..++.+ .+....+++.+|.+||.+.|+.++..||.++..+++..|..|..++.. ++-.+++ .
T Consensus 19 ~~i~~i~d~~~~-----~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~ 93 (115)
T cd00197 19 PLIMEICDLINE-----TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKL 93 (115)
T ss_pred HHHHHHHHHHHC-----CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccc
Confidence 455666666542 133468999999999999999999999999999999999999876433 3333332 1
Q ss_pred h-CCCcHHHHHHHHHHHHHHH
Q 000159 945 L-GDNKKHMRECTLTVLDAWL 964 (2013)
Q Consensus 945 L-~D~k~~Vr~aa~~aL~~i~ 964 (2013)
. .+....||+.+...+..|.
T Consensus 94 ~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 94 LGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred ccCCCChHHHHHHHHHHHHHh
Confidence 1 2456789999999998885
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.32 E-value=15 Score=49.46 Aligned_cols=198 Identities=17% Similarity=0.198 Sum_probs=123.8
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC-CCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhh
Q 000159 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 797 (2013)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~-~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~ 797 (2013)
+++.+..+ ..+-+-++..++..|..+++..-.. .+....++..+... +.|.|+-|==.|++.++.|......++
T Consensus 729 ~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lcevy~e~i--- 803 (982)
T KOG4653|consen 729 LQEAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCEVYPEDI--- 803 (982)
T ss_pred HHHHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHHhcchhh---
Confidence 44444443 4566778999999999999844222 23455688888888 999999999999996666654444332
Q ss_pred hhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHH
Q 000159 798 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAV 877 (2013)
Q Consensus 798 L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l 877 (2013)
-|.+.+..+.+-.+.+ .| .|..-=|.+
T Consensus 804 ----l~dL~e~Y~s~k~k~~------------------------------~d-------------------~~lkVGEai 830 (982)
T KOG4653|consen 804 ----LPDLSEEYLSEKKKLQ------------------------------TD-------------------YRLKVGEAI 830 (982)
T ss_pred ----HHHHHHHHHhcccCCC------------------------------cc-------------------ceehHHHHH
Confidence 2222222222211110 00 000011334
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh-CCCcHHHHHHH
Q 000159 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECT 956 (2013)
Q Consensus 878 ~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L-~D~k~~Vr~aa 956 (2013)
.+++..- +.+....++.|...+...+.|+....+..++..+|.++.........++..++..++... .|....||.||
T Consensus 831 ~k~~qa~-Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaA 909 (982)
T KOG4653|consen 831 LKVAQAL-GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAA 909 (982)
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHH
Confidence 4444321 122222245667777777788888899999999999998876555556666666666544 58889999999
Q ss_pred HHHHHHHHHhcCchhhHHHH
Q 000159 957 LTVLDAWLAAVHLDKMVPYV 976 (2013)
Q Consensus 957 ~~aL~~i~~~~gl~~ll~~l 976 (2013)
...+......+| ..++|.+
T Consensus 910 v~li~~lL~~tg-~dlLpil 928 (982)
T KOG4653|consen 910 VHLLAELLNGTG-EDLLPIL 928 (982)
T ss_pred HHHHHHHHhccc-hhhHHHH
Confidence 999999988888 3334433
|
|
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=91.29 E-value=2.4 Score=46.01 Aligned_cols=105 Identities=24% Similarity=0.365 Sum_probs=76.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc-chhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~ll 938 (2013)
+...||.. .-.|.+.++. ....-.+.+.+|++||. ..|.+|+..||.++..+++.+|..|... .+.|+
T Consensus 14 l~~~dw~~----ileicD~In~-----~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGL----NMEICDIINE-----TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 45568863 3334444431 22234789999999997 4689999999999999999999999754 35677
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCchhhHHH
Q 000159 939 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVHLDKMVPY 975 (2013)
Q Consensus 939 p~-ll~~L~D---~k~~Vr~aa~~aL~~i~~~~gl~~ll~~ 975 (2013)
.. +++.+.+ ....|+.-+...+..|.....-+.=++.
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~ 125 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTG 125 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchH
Confidence 76 6777754 3357999999999999988754433333
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.24 E-value=5.1 Score=49.06 Aligned_cols=174 Identities=19% Similarity=0.210 Sum_probs=109.6
Q ss_pred CChHHHHHHHHHHHHHHHh---ccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh-HHHH
Q 000159 865 PDWKVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG-VLSD 940 (2013)
Q Consensus 865 ~~Wk~R~eale~l~~il~~---a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~-llp~ 940 (2013)
.+-..|..|++.|+.++.. |+..+. +|-+...|. .+++++..|+..|+.+|+..+..=.+--....+. .+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~---~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLIS---LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhh---ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 3566788999999999874 222222 244555555 8999999999999999999886644333333222 6677
Q ss_pred HHHHhC-CCcHHHHHHHHHHHHHHHHhc--CchhhHH-----HHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCC-hh
Q 000159 941 ILKCLG-DNKKHMRECTLTVLDAWLAAV--HLDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-AA 1011 (2013)
Q Consensus 941 ll~~L~-D~k~~Vr~aa~~aL~~i~~~~--gl~~ll~-----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~-~~ 1011 (2013)
++..|. |..-.+|..|.-|+..++++- |.+.++. .+.++|+++..+...+.-++..+...+.......+ ..
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 777776 444568899999999999985 4555655 57888887544566777777777777665543222 11
Q ss_pred hhHHH--HHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1012 HLLKP--ASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1012 ~ll~p--l~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
.+..+ +.....--..+++.++..++-.+...
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 11111 11122223345666665555444433
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.3 Score=52.28 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhchhhhh--hHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--hhhHHHHHHHHhhcCChhhH
Q 000159 71 KALDALIAYLKAADADAGR--YAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAV 145 (2013)
Q Consensus 71 ~~leal~~~v~~~~~~~~~--~~~~v~~~LveK~l~-~k~~~k~~A~~~ll~~~E~~~--~~~v~~~L~~~~~~KnpKv~ 145 (2013)
+.|..+...+++...+... ...+++..||-.++. ..+.+|+.|..|+=.++=++. ....+..+...+....+.+.
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 3566677777776533332 235788888888776 578999999999888876543 34556666777766688999
Q ss_pred HHHHHHHHHHHHHhCCCCcCh----------hHHHHhhhhhhcCCChHHHHHHHHHHHHHH
Q 000159 146 VPAIDVMFQALSEFGAKIIPP----------KRILKMLPELFDHQDQNVRASSKGLTLELC 196 (2013)
Q Consensus 146 ~~~l~~L~~~l~~fG~~~i~~----------k~il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (2013)
..|+.++..++-.||...+.- ..+++.+.+.+.+.+++||..|..-+..|+
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999999876532 358899999999999999999988887776
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.74 Score=60.07 Aligned_cols=183 Identities=19% Similarity=0.243 Sum_probs=127.4
Q ss_pred cccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhh
Q 000159 852 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (2013)
Q Consensus 852 ~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~ 930 (2013)
..+.+-+++.++..+-.+|.--|+.+.+.+. .+.+.. -.++++.+...+.|.|..++.+++.++..||..++..
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~----~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYID----HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhh----hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 3456678888899999999999999988885 444432 2678899999999999999999999999999999887
Q ss_pred HhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc---hhhHH-HHHHHHhcCCCChhhHHHHHHHHHHHhccCCC
Q 000159 931 EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL---DKMVP-YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (2013)
Q Consensus 931 ~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl---~~ll~-~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2013)
..-..++-.+-..-.|....+|+-..-||..+..+... ..++. .+..+++++- .|.-..+++.+.+ ..++-.
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf-~paR~a~v~~l~a--t~~~~~ 479 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPF-VPARKAGVLALAA--TQEYFD 479 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCC-CCchhhhhHHHhh--cccccc
Confidence 33345666666666689999999999999988877632 22222 3445666652 2322344443332 222222
Q ss_pred CCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc
Q 000159 1007 FPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (2013)
Q Consensus 1007 ~~~~~-~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~ 1043 (2013)
..++. ++++-+...+.|.+..||..|..++..+...+
T Consensus 480 ~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 480 QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 22333 33334556679999999999998887665544
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.83 Score=60.84 Aligned_cols=144 Identities=20% Similarity=0.181 Sum_probs=108.3
Q ss_pred cccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccc-cCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhCh
Q 000159 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANK-RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (2013)
Q Consensus 850 Is~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~-~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~ 928 (2013)
+...+.|.+...+....--+|-.=++.+..++..-.+ -+.|. +..|++.|.+.|+=....|+..+++++..+....+.
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~-~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQ-FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccc-hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 3445666677766644445555566677777763222 23444 588999999999888888889999999999999999
Q ss_pred hhHhhhhhHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHhcCCCChhhHHHHHHH
Q 000159 929 AVEKSSKGVLSDILKCLGDNK---KHMRECTLTVLDAWLAAVHL-------DKMVPYVTTALTDAKLGAEGRKDLFDW 996 (2013)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~k---~~Vr~aa~~aL~~i~~~~gl-------~~ll~~l~~~L~~~k~~p~~R~~~l~~ 996 (2013)
-...|+..++|.++..-.|++ ..||..|.+||+.+.+.++. +.++-.+.+.|.|+|. -+|.++...
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKR--lVR~eAv~t 1018 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKR--LVRKEAVDT 1018 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHH--HHHHHHHHH
Confidence 999999999999999988877 67999999999999997653 4455566677777753 567776543
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=90.47 E-value=1.5 Score=49.17 Aligned_cols=91 Identities=19% Similarity=0.147 Sum_probs=71.7
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH---HHHh
Q 000159 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI---AKSV 476 (2013)
Q Consensus 400 ~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l---~~~~ 476 (2013)
.++.+++.+.+++.++.-.-+--+.+-+..+++......+.++++.+++.+..+|+-.+++|..++.++|..+ ...+
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 4566788889999876655555555555555665344456788999999999999999999999999999999 8889
Q ss_pred CchhHHHHHhhccHH
Q 000159 477 GMRPLERSIEKLDDV 491 (2013)
Q Consensus 477 Ge~~~~~~l~~Ld~~ 491 (2013)
|+ ++.||+.+|-+.
T Consensus 115 G~-aLvPyyrqLLp~ 128 (183)
T PF10274_consen 115 GE-ALVPYYRQLLPV 128 (183)
T ss_pred hH-HHHHHHHHHHHH
Confidence 96 488998877653
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=90.39 E-value=3.7 Score=50.49 Aligned_cols=127 Identities=16% Similarity=0.098 Sum_probs=92.0
Q ss_pred HHHHHHHhhhcchhh--hHhHHHHHH-HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHH
Q 000159 349 IGNLARGLRTHFSGS--SRFLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLN 425 (2013)
Q Consensus 349 l~~La~~L~~~f~~~--~~~llp~LL-~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~ 425 (2013)
+..+-+.....+.+. ...++..++ ..+..+.+.||+.+..||.-+.-.......+.++.+...++.....+|..+++
T Consensus 7 ~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~ 86 (298)
T PF12719_consen 7 TQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALK 86 (298)
T ss_pred HHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 333333333445443 346666665 55677788999999999987665411223456677777787778999999999
Q ss_pred HHHHHHHhcChhHHHHh--------hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 426 WVTFCIETSSKAAVLKV--------HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 426 ~L~~~l~~~~~~~l~~~--------l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
.+..++-.++...+... ...+...+.+.+.+.++++|..|.+++..+.-.
T Consensus 87 ~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 87 ALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999988876544322 257888999999999999999999999988743
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=90.34 E-value=2.7 Score=46.60 Aligned_cols=146 Identities=12% Similarity=0.169 Sum_probs=92.1
Q ss_pred CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHH--hc
Q 000159 321 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK--AG 397 (2013)
Q Consensus 321 ~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~--~~ 397 (2013)
.+|.+|+..|.+.++ +.+..++.++++++|.|+. .+||....+..-.. +.. ..+....+.+.... ..
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~---~~~--~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGA-----LDPYKHKSIQKSLD---SKS--SENSNDESTDISLPMMGI 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-----cCcHHHhcccccCC---ccc--cccccccchhhHHhhccC
Confidence 468999999999998 7778999999999999873 44554332211111 100 01111111121111 11
Q ss_pred CCChHhHH-----HHHHHHhhcCC-hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000159 398 CLNLVDVV-----EDVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (2013)
Q Consensus 398 ~~~l~~il-----~~l~~~l~~Kn-p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~ 471 (2013)
..+.++.. ..+..-|++++ ..-...+++.+..+|...+... .++++.++|.+...+....+..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11334433 33445555544 4555567777777776655444 57789999999999999999999999988888
Q ss_pred HHHHhC
Q 000159 472 IAKSVG 477 (2013)
Q Consensus 472 l~~~~G 477 (2013)
+...++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 877653
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.20 E-value=8 Score=51.54 Aligned_cols=176 Identities=19% Similarity=0.215 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHHHhc--CCCCCCC-ChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhH-hHHHHHH
Q 000159 298 KWSERKDAVAELTKLAS--TKRIAPG-DFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLL 372 (2013)
Q Consensus 298 kWkeR~eaL~~L~~l~~--~pki~~~-~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~-~llp~LL 372 (2013)
+-..-.+|+.+|..++. +..-..+ -...+++.|.+++. +.|.-+...||+||.+|+..+....+-.++ ..+|.++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 55566788888877552 2222222 24689999999999 889999999999999999999877654433 5889999
Q ss_pred HHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhHHH-----HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000159 373 EKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVE-----DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (2013)
Q Consensus 373 ~klkd-kk~~V~~aa~~aL~ai~~~~~~~l~~il~-----~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (2013)
+||-. .=-.|.+...+||..|-+. +..+|+. ..+..+.==.-.+.+.++...+.|-....+..+ ..+-+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ea 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEA 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHH
Confidence 98865 4456778888888777653 3334432 112222212223444555566666555554433 334667
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000159 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 447 ~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~G 477 (2013)
+|.|+..|...+..+-+..+-|+..+..-+-
T Consensus 337 lPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 337 LPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 8999999988888888888888877765543
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.89 Score=59.37 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=78.1
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000159 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2013)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~--~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2013)
.|-..++|.|++.|+-....||--+..=++..+.+- ..--+.|+|.+..++.+.|+.+|..|+..+..++....+..+
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 578889999999999999999988877777777661 112357889999999999999999999999988877665543
Q ss_pred HHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 440 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
. -+++..+.++-.|.++..|....-|++.+.
T Consensus 406 n---~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 406 N---GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred c---HHHHHHHHhhCccccCcccccceeeecccc
Confidence 2 334445555555555555555555554443
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=89.53 E-value=5.1 Score=43.60 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=68.5
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Q 000159 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~l~D-s~~~VR~aA~~al~~l~~~ 475 (2013)
..+..+.+..|..-++++||.+-..++..|..|+.+++...... .-+.++..+.+.+.+ .+++||+-..+.+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 35667788888888899999999999999999999998753222 237788889999988 8999999999999999888
Q ss_pred hCch
Q 000159 476 VGMR 479 (2013)
Q Consensus 476 ~Ge~ 479 (2013)
+...
T Consensus 112 f~~~ 115 (144)
T cd03568 112 FKND 115 (144)
T ss_pred hCCC
Confidence 8754
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=89.19 E-value=2.7 Score=47.47 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHh-ChhhHhhhhhHHHHH------------HHHhCCCcHHHHHHHHHHHHHHHHhcC--------
Q 000159 910 NLVMATLITLGAVASAM-GPAVEKSSKGVLSDI------------LKCLGDNKKHMRECTLTVLDAWLAAVH-------- 968 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~al-g~~~~~~~~~llp~l------------l~~L~D~k~~Vr~aa~~aL~~i~~~~g-------- 968 (2013)
+|++.|+.+++.+++.. ++.|..|-..|+|.- .-.+.|..+-+|.+|..++.++.+...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 47899999999999994 556778888888755 335679999999999999999987642
Q ss_pred --------------chhhHH----HHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC---CC-hhhhHHHHHhhcCCCCh
Q 000159 969 --------------LDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PD-AAHLLKPASIAMTDKSS 1026 (2013)
Q Consensus 969 --------------l~~ll~----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~---~~-~~~ll~pl~~~L~D~~~ 1026 (2013)
+..++- .+.-+|+.++ ++..-..+++-++-.++..+-. .+ +..++..+...+.+++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 011111 2334454443 3455567777777666655432 23 34455556777888999
Q ss_pred HHHHHHHHHHHHHHHHc
Q 000159 1027 DVRKAAEACIVEILRAG 1043 (2013)
Q Consensus 1027 dVR~aA~~~L~~l~~~~ 1043 (2013)
+||.++..|++.+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999998876543
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=89.15 E-value=1.8 Score=46.92 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=65.0
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHHhhhhhhc-CCChHHHHHHHHHHHHHHHhhC
Q 000159 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFD-HQDQNVRASSKGLTLELCRWIG 200 (2013)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~-~~d~~VR~~a~~l~~ely~~lG 200 (2013)
++...+.+|.+.+.++||+++.-+|..|-.++++=|... +.-+.|+..|.+++. +.+..||+....++.+-+...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 467888899999999999999999999999999877632 334778888998886 6789999999999988887776
Q ss_pred C
Q 000159 201 K 201 (2013)
Q Consensus 201 ~ 201 (2013)
.
T Consensus 118 ~ 118 (142)
T cd03569 118 N 118 (142)
T ss_pred C
Confidence 4
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=88.86 E-value=69 Score=40.64 Aligned_cols=170 Identities=19% Similarity=0.141 Sum_probs=103.4
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHH
Q 000159 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2013)
Q Consensus 865 ~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~ 944 (2013)
++--+|.+|+.-++.++.-. +....- -..++.++.....+.+-..+..+++++.+++-. .+.+--++.. +..+++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~-~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P~lv~~~gG-~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIK-KGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALL-NPELVAECGG-IRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhc-CCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CHHHHHHcCC-HHHHHHH
Confidence 45678999999999999741 111111 256788888888888888999999999988843 2333222222 3666777
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC-----CCChh-hHH-HHHHHHHHHhccCCCC----
Q 000159 945 LGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA-----KLGAE-GRK-DLFDWLSKQLTGLSGF---- 1007 (2013)
Q Consensus 945 L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~-----k~~p~-~R~-~~l~~L~~~l~~~~~~---- 1007 (2013)
+.|....+.++...++-.++.+-. .+.-++.+...+.+. +.+.+ .|. .....+...+..|+.-
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 777554577777777766665432 122233343333322 11121 242 3334455667777652
Q ss_pred CChhhhHHHHHhhcCCCChHHHHHHHHHHHH
Q 000159 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1038 (2013)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~ 1038 (2013)
.+-..-++.++.+|.-++.++|+.....+-.
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~d 266 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFD 266 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1222567778888988999999887655543
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.64 E-value=6.1 Score=47.22 Aligned_cols=176 Identities=17% Similarity=0.158 Sum_probs=110.0
Q ss_pred hhhcCCChhhh-ccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHh-hhcC-CcHHHHHHHHHHHHHHHHHhch
Q 000159 9 KEAKKLPWEDR-LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVAD-SNAPVQDKALDALIAYLKAADA 85 (2013)
Q Consensus 9 ~~~~~lpl~er-l~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k-~v~D-sN~~vqe~~leal~~~v~~~~~ 85 (2013)
.|+-.+|+... +.+++-+.|..|...|...-.. .++......|...+.+ .+.+ -|-.+|..||.+|..+--..
T Consensus 51 r~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-- 126 (254)
T PF04826_consen 51 RDLGGISLIGSLLNDPNPSVREKALNALNNLSVN--DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-- 126 (254)
T ss_pred HHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc--
Confidence 45556666544 4568889999998888765322 2333344556555544 3444 48999999999987763111
Q ss_pred hhhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh------hhHHHHHHHHhhcCCh-hhHHHHHHHHHHHHHH
Q 000159 86 DAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV------DVFLDVMEKAIKNKVA-KAVVPAIDVMFQALSE 158 (2013)
Q Consensus 86 ~~~~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~------~~v~~~L~~~~~~Knp-Kv~~~~l~~L~~~l~~ 158 (2013)
+.-......++.++.=...+...+|..+..+++.+.+-... ..+...+..-|..+.+ .+...+|.++..+-+.
T Consensus 127 ~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 127 DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 11112233455554322236888999999999988865321 1344455555665544 4577777777777777
Q ss_pred hCCCC--c---------------ChhHHHHhhhhhhcCCChHHHHHH
Q 000159 159 FGAKI--I---------------PPKRILKMLPELFDHQDQNVRASS 188 (2013)
Q Consensus 159 fG~~~--i---------------~~k~il~~l~~ll~~~d~~VR~~a 188 (2013)
++... . ..+.+-+.|..++.|+|+.||+..
T Consensus 207 ~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 207 IKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred hCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 76642 1 124577888899999999999863
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=87.80 E-value=91 Score=39.70 Aligned_cols=311 Identities=15% Similarity=0.171 Sum_probs=169.4
Q ss_pred ccCCChHHHHHHHHHHHHHhhccCC-CCchHHHhhhhh----hHhhhcC-------CcHHHHHHHHHHHHHHHHHhchh-
Q 000159 20 LLHKNWKVRNEANIDLAALCDSITD-PKDNRIRELGPL----FKKTVAD-------SNAPVQDKALDALIAYLKAADAD- 86 (2013)
Q Consensus 20 l~~k~WK~R~~ayeeL~~~~~~~~d-~~~~~~~~~~~~----~~k~v~D-------sN~~vqe~~leal~~~v~~~~~~- 86 (2013)
|.+.+=-.|.+||-.|...++.... ++.....+..++ ++.=+.. -+...-..||.++..|+-.....
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 4556667899999999999986532 222223332222 2222222 25566678899998888553220
Q ss_pred -hh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---------hhhhhHHHHHHH---HhhcCChhhHHHHHHHH
Q 000159 87 -AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---------EAVDVFLDVMEK---AIKNKVAKAVVPAIDVM 152 (2013)
Q Consensus 87 -~~-~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~---------~~~~~v~~~L~~---~~~~KnpKv~~~~l~~L 152 (2013)
.. .....++...++..-+ ...-|..+...+..+.+- +.++.++..+.. .+.++ -++.+.+.++
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~-~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~--si~~erL~i~ 158 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQN-PNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSK--SIISERLNIY 158 (372)
T ss_pred hCChHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCch--hHHHHHHHHH
Confidence 11 1122244444444222 122233333333333221 112223332221 22233 4788999999
Q ss_pred HHHHHHhCCCCc-ChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000159 153 FQALSEFGAKII-PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (2013)
Q Consensus 153 ~~~l~~fG~~~i-~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (2013)
..++.+|...-+ .....++.+...+-|..+.+|..|..+..++-..+|++ ..+. +.+.+.++..-
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~---~~~s--------~~~~~~~~~~~--- 224 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN---KELS--------KSVLEDLQRSL--- 224 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh---HHHH--------HHHHHHhcccc---
Confidence 999999866322 34557777777788999999999999999998888864 1111 11111111000
Q ss_pred CCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhcc-CCHHHHHHHHH---
Q 000159 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA-TKWSERKDAVA--- 307 (2013)
Q Consensus 232 ~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s-~kWkeR~eaL~--- 307 (2013)
.+.++. + .+. +.+.+.+.+ +++ +.+.+
T Consensus 225 ~~~~~~---------------------------------~------------~~~-~~L~~mi~~~~~~---~~a~~iW~ 255 (372)
T PF12231_consen 225 ENGKLI---------------------------------Q------------LYC-ERLKEMIKSKDEY---KLAMQIWS 255 (372)
T ss_pred ccccHH---------------------------------H------------HHH-HHHHHHHhCcCCc---chHHHHHH
Confidence 000000 0 000 111111222 111 11222
Q ss_pred HHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcc---hhhhHhHHHHHHHHhccCcH---
Q 000159 308 ELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF---SGSSRFLLPVLLEKLKEKKP--- 380 (2013)
Q Consensus 308 ~L~~l~~~pki~~-~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f---~~~~~~llp~LL~klkdkk~--- 380 (2013)
.+..++..+.+.. ..+.+.+....+++++.+..+...|..+=..|...+..+- ....+.++.++...++.++.
T Consensus 256 ~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~ 335 (372)
T PF12231_consen 256 VVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKT 335 (372)
T ss_pred HHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccc
Confidence 2233444444444 3457888999999999999999999999888888665442 35566777777777755432
Q ss_pred --HHHHHHHHHHHHHHHh
Q 000159 381 --TVAESLTQTLQAMHKA 396 (2013)
Q Consensus 381 --~V~~aa~~aL~ai~~~ 396 (2013)
.++..+...+..++-+
T Consensus 336 ~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 336 KEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred cHHHHHHHHHHHhchHHH
Confidence 5677776666665543
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.16 E-value=23 Score=50.90 Aligned_cols=253 Identities=10% Similarity=0.062 Sum_probs=137.0
Q ss_pred cCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCccc---------ccCccccCC
Q 000159 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT---------VRASESTSS 836 (2013)
Q Consensus 766 ~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~---------~r~~~~~~s 836 (2013)
+ |.|.|.+||--..-|+..+.+...|.. +|-...-..+.+.+.++|..+.....|--.|. ++..
T Consensus 58 ~-L~h~d~dvrllvacCvseilRi~aPea-Py~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~----- 130 (1266)
T KOG1525|consen 58 L-LKHKDKDVRLLVACCVSEILRIYAPEA-PYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFC----- 130 (1266)
T ss_pred H-hcCCCcChhHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHH-----
Confidence 5 899999999999999999999888753 12111122344555566665543222211110 0000
Q ss_pred CCCCCCCCCCCcccccccchHHHHh----cCCC---ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhH
Q 000159 837 VSSGGSDGLPREDISGKFTPTLVKS----LESP---DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909 (2013)
Q Consensus 837 ~~~~~~d~lpr~dIs~~L~~~ll~~----l~d~---~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~ 909 (2013)
-..+.....+ +..+++.. ..+. +|-. -++-+..++.+. ..- -.+++..|..-|-..+.
T Consensus 131 ---l~~~l~d~~e----~~~~~f~~f~d~~~~~~~~~v~~---~~~i~~~li~e~----d~v-~~e~L~~ll~~lv~~~~ 195 (1266)
T KOG1525|consen 131 ---LLMLLEDCQE----LVHELFRTFFDLARKGHPKKVFN---MLDIAIMLITEE----DTV-QSELLDVLLENLVKPGR 195 (1266)
T ss_pred ---heeeccchHH----HHHHHHHHHHHHHhccccHHHHH---HHHHHHHHHHhh----ccc-hHHHHHHHHHHhccCCC
Confidence 0001111111 22222222 2111 2322 222222222221 111 14555555555544445
Q ss_pred HHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCCh
Q 000159 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 987 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~p 987 (2013)
+....|..+-..+...++...++....++..-+..-......++....+-+-.+..... +-.++|.+..-|.+. +-
T Consensus 196 ~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se--~~ 273 (1266)
T KOG1525|consen 196 DTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSE--QE 273 (1266)
T ss_pred CccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc--hH
Confidence 55556666655666666666555555555444433333444555555555555444432 355667776666655 46
Q ss_pred hhHHHHHHHHHHHhccCCC--CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 988 EGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
..|..+.+.+.+.|..... .....++...++..+.|.+.+||-+..++...+...
T Consensus 274 ~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 274 EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 8999999999988875443 223566777788889999999999988877655433
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=87.03 E-value=82 Score=43.15 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=72.1
Q ss_pred HHHHHHHHHHh--ChhhHhhhh--hHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC
Q 000159 916 LITLGAVASAM--GPAVEKSSK--GVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA 983 (2013)
Q Consensus 916 l~~l~~La~al--g~~~~~~~~--~llp~ll~~L~D~k--~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~ 983 (2013)
++|+|.|+..- +.++..++. .++|-+.+.|.... ..+.-.+.-.+++++..-. -..+++.+...|..+
T Consensus 509 vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 509 VECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred HHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhh
Confidence 34444444332 446666664 58888888886443 3455555556665553211 134567777777644
Q ss_pred CCChhhHHHHHHHHHHHhccCCCCCCh---hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc
Q 000159 984 KLGAEGRKDLFDWLSKQLTGLSGFPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (2013)
Q Consensus 984 k~~p~~R~~~l~~L~~~l~~~~~~~~~---~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~ 1043 (2013)
.-+-+.=..++-.+-+.+.+-.+-..+ .+....++..+.|+|++||+.+..||..++.+=
T Consensus 589 qeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 589 QEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred CchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 222222233333333333322111111 334445889999999999999999999887654
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.66 E-value=1.4e+02 Score=40.54 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=56.5
Q ss_pred HHHHhhhcChhhhHHHHHHHHHHHhhh----ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHH
Q 000159 687 LGISERVADIKTRAHAMKCLTTFSEAV----GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLID 761 (2013)
Q Consensus 687 ~~LveKlgD~K~r~~a~e~L~~l~e~~----~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~ 761 (2013)
..|++-+-|--....+...|..+..-. .|..-+..++..+ --.|..||.++...|.++. .... ....+.-
T Consensus 432 ~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv-iLEn~ivRaaAv~alaKfg----~~~~~l~~sI~v 506 (865)
T KOG1078|consen 432 EHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV-ILENAIVRAAAVSALAKFG----AQDVVLLPSILV 506 (865)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh-hhhhhhhHHHHHHHHHHHh----cCCCCccccHHH
Confidence 334444444333444444444443321 2333333344332 2467889999998877655 3322 2345777
Q ss_pred HHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 762 FCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 762 ~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
.++.+ +-|++..||+.|.-.+..+-
T Consensus 507 llkRc-~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 507 LLKRC-LNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHH-hcCchHHHHHHHHHHHHHhh
Confidence 77776 99999999999998888775
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.53 E-value=1.1e+02 Score=39.55 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC---CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 715 PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 715 ~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~---l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
|..-+.+++..+ --.|.-||.+++.+|+. ||... +..+.+...++.+ +.|.+.+||+-|.-++..|-
T Consensus 485 P~~yvrhIyNR~-iLEN~ivRsaAv~aLsk----f~ln~~d~~~~~sv~~~lkRc-lnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 485 PGKYVRHIYNRL-ILENNIVRSAAVQALSK----FALNISDVVSPQSVENALKRC-LNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cchHHHHHHHHH-HHhhhHHHHHHHHHHHH----hccCccccccHHHHHHHHHHH-hhcccHHHHHHHHHHHHhhh
Confidence 334444555443 24677889999887755 55432 3346677778886 99999999999998887775
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.49 E-value=38 Score=41.81 Aligned_cols=182 Identities=12% Similarity=0.168 Sum_probs=113.0
Q ss_pred hccCCHHHHHHHHHHHHHHhc----CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh-HhHH
Q 000159 294 VKATKWSERKDAVAELTKLAS----TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLL 368 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~----~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~ll 368 (2013)
..+..-.+|.+|++.|..++. +..+.+ ++-+...+. .+++++..|+..|+.+|+..+..--+.=+... ...+
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 356778888999999988873 222222 223344444 88899999999999999998864332111110 1256
Q ss_pred HHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCChHhHH-----HHHHHHhhc--CChHHHHHHHHHHHHHHHhcChhH-H
Q 000159 369 PVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVV-----EDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKAA-V 439 (2013)
Q Consensus 369 p~LL~klk-dkk~~V~~aa~~aL~ai~~~~~~~l~~il-----~~l~~~l~~--Knp~vR~~~l~~L~~~l~~~~~~~-l 439 (2013)
+.|+..+. +....++..+.-|+.+++.+.......++ ..|..++++ .+.+.|.-++.++..+++...... +
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 67777774 45556789999999999988322223332 456677887 668888899999998887654221 1
Q ss_pred HHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 440 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
.. .--+...+.....--+-++++++..++-.+......+
T Consensus 249 ~~-~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 249 AS-SLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTR 287 (342)
T ss_pred HH-HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhc
Confidence 11 0111122233334445677888877777666555433
|
|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.03 E-value=7.5 Score=55.60 Aligned_cols=201 Identities=11% Similarity=0.068 Sum_probs=136.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
.+++.+.-++-..|..|++.+.+++...+....-..++.....+.+...|-+..|+.++..++..+.+.+++.+.+|++.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 56678888899999999999999997432221112245566677788899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--------chhhHHHHHHHHh--cCC------C---------ChhhHH
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--------LDKMVPYVTTALT--DAK------L---------GAEGRK 991 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--------l~~ll~~l~~~L~--~~k------~---------~p~~R~ 991 (2013)
++|.++-..-|....|..+|.+........-. -..+.+.+.+.+. ++. + ..++-.
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ 204 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVIS 204 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHH
Confidence 99999999999999999998888876553211 0122222222221 100 0 133445
Q ss_pred HHHHHHHHHhccCCCCCC-------hhhhHHH--HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCCh
Q 000159 992 DLFDWLSKQLTGLSGFPD-------AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1057 (2013)
Q Consensus 992 ~~l~~L~~~l~~~~~~~~-------~~~ll~p--l~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~ 1057 (2013)
..+..+...+...+...+ .+.+... +.+.+.++++.||.+..+++-.+...+....|....+.+++
T Consensus 205 ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~ 279 (1312)
T KOG0803|consen 205 SSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKP 279 (1312)
T ss_pred HHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhH
Confidence 556566555544433211 2222222 66678999999999999999888776655433333333433
|
|
| >KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.88 E-value=3.8 Score=52.60 Aligned_cols=110 Identities=25% Similarity=0.411 Sum_probs=83.1
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhH
Q 000159 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (2013)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~l 937 (2013)
..+.+.||-.=.+ |.++|+. . ..+ ..|.+.+|++|++..|..|+..||.+|..+++.+|..|... -+.|
T Consensus 12 ~~l~~pDWa~Nle----IcD~IN~--~--~~~-~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLE----ICDLINS--T--EGG-PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHH----HHHHHhc--C--ccC-cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3467779964433 5555531 1 112 36999999999999999999999999999999999999843 3568
Q ss_pred HHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc-hhhHHHHHH
Q 000159 938 LSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL-DKMVPYVTT 978 (2013)
Q Consensus 938 lp~ll~~L~D~--k~~Vr~aa~~aL~~i~~~~gl-~~ll~~l~~ 978 (2013)
+.-++...+.+ ...||+-+...|++|....+- +.-++.+..
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~ 126 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQ 126 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHH
Confidence 89998888876 456999999999999988753 554454433
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.83 E-value=24 Score=47.46 Aligned_cols=192 Identities=16% Similarity=0.078 Sum_probs=122.6
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHH---hCCCCCChhhHHHHHHhcCCCCC-cHhHHHHHHHHHHHHHHhhChhH
Q 000159 719 FERLYKIMKDHKNPKVLSEGILWMVSAVED---FGVSHLKLKDLIDFCKDTGLQSS-AAATRNATIKLLGALHKFVGPDI 794 (2013)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~---fG~~~l~~k~li~~l~~~gL~~~-n~~VR~aA~~ll~~Ly~~~G~~l 794 (2013)
+.+|+.++.....|-.+.+++..|++.+-- -....++++.+++.+..+ |.|. |.++-..|..++..|+....++.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~L-L~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVAL-LSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHhhccchh
Confidence 344555554445777888888888888742 223357889999999988 8886 78999999999988876554432
Q ss_pred Hhhh-hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCC-hHHHHH
Q 000159 795 KGFL-ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPD-WKVRLE 872 (2013)
Q Consensus 795 ~~~L-~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~-Wk~R~e 872 (2013)
.--. .+..|.++..|. --. -.+-..
T Consensus 248 a~vV~~~aIPvl~~kL~-----------------------------------------------------~IeyiDvAEQ 274 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLL-----------------------------------------------------TIEYIDVAEQ 274 (1051)
T ss_pred heeecccchHHHHHhhh-----------------------------------------------------hhhhhHHHHH
Confidence 2111 112222222111 111 112234
Q ss_pred HHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHH
Q 000159 873 SIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952 (2013)
Q Consensus 873 ale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~V 952 (2013)
+|++|+.|-+..++.|.-. |.|+..|. .|.=-...++..|+.+...+++.+.++-..|+-..+|.+...|......+
T Consensus 275 ~LqALE~iSR~H~~AiL~A--G~l~a~Ls-ylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ 351 (1051)
T KOG0168|consen 275 SLQALEKISRRHPKAILQA--GALSAVLS-YLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKP 351 (1051)
T ss_pred HHHHHHHHHhhccHHHHhc--ccHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchh
Confidence 6677777666433333221 44444432 11112345677888999999999998877888889999999998777777
Q ss_pred HHHHHHHHHHHHHhc
Q 000159 953 RECTLTVLDAWLAAV 967 (2013)
Q Consensus 953 r~aa~~aL~~i~~~~ 967 (2013)
.+.+.-|+..++...
T Consensus 352 ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 352 IESVCICLTRIADGF 366 (1051)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777778888887765
|
|
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=84.81 E-value=12 Score=40.58 Aligned_cols=96 Identities=26% Similarity=0.395 Sum_probs=70.8
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHHH
Q 000159 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 371 (2013)
+.+.+|.- +-.|..+++.. +..-.+.+++|+++|+..|+++...|+.++..+.+.-|..|... ...++..|
T Consensus 18 ~~~~Dw~~----~l~icD~i~~~---~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l 90 (140)
T PF00790_consen 18 LPSPDWSL----ILEICDLINSS---PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDEL 90 (140)
T ss_dssp SSS--HHH----HHHHHHHHHTS---TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHH
Confidence 45678853 34455555322 23346899999999999999999999999999999999998755 35677777
Q ss_pred HHHhccCcHH----HHHHHHHHHHHHHHh
Q 000159 372 LEKLKEKKPT----VAESLTQTLQAMHKA 396 (2013)
Q Consensus 372 L~klkdkk~~----V~~aa~~aL~ai~~~ 396 (2013)
.+.+..+... |++.+.+.+..|...
T Consensus 91 ~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 91 VKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 7766654432 888888888888765
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=84.55 E-value=6.3 Score=41.08 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhH--hHHHHHHH----H-h-
Q 000159 304 DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR--FLLPVLLE----K-L- 375 (2013)
Q Consensus 304 eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~--~llp~LL~----k-l- 375 (2013)
..+..|..++... +..+.++++.|.++|.+.|..++..|+.+|..+.+.-+..|..++. .++-.++. . .
T Consensus 19 ~~i~~i~d~~~~~---~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~ 95 (115)
T cd00197 19 PLIMEICDLINET---NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLG 95 (115)
T ss_pred HHHHHHHHHHHCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccccc
Confidence 4566666665422 3457899999999999999999999999999999999998876643 22223321 1 1
Q ss_pred ccCcHHHHHHHHHHHHHHH
Q 000159 376 KEKKPTVAESLTQTLQAMH 394 (2013)
Q Consensus 376 kdkk~~V~~aa~~aL~ai~ 394 (2013)
++....||+.+...+..|.
T Consensus 96 ~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 96 DDVSTNVREKAIELVQLWA 114 (115)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 2345677877777776653
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=84.43 E-value=1.6e+02 Score=39.22 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=81.6
Q ss_pred hhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhc-C-ChHHHHHHHHHHHHHHH
Q 000159 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKN-K-VPLVRSLTLNWVTFCIE 432 (2013)
Q Consensus 357 ~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~--~~~~l~~il~~l~~~l~~-K-np~vR~~~l~~L~~~l~ 432 (2013)
...|++....++|++|.++..+...||..+.+.+..+..- +...+.-=++.|+...++ . ++.+|..++-|+...+.
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 3468888999999999999999999999999999887655 112222224566666654 3 59999999999999999
Q ss_pred hcChhHHHHhhhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHhC
Q 000159 433 TSSKAAVLKVHKDYVPICMECLNDGT---PEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 433 ~~~~~~l~~~l~~l~p~l~k~l~Ds~---~~VR~aA~~al~~l~~~~G 477 (2013)
+.+...- ..++|.+++++.... .+........+..++++..
T Consensus 94 Rl~~~e~----~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~ 137 (501)
T PF13001_consen 94 RLDDEER----RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLP 137 (501)
T ss_pred cCCHHHH----HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCC
Confidence 8876543 567888888886332 2333334444444444443
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=84.34 E-value=16 Score=39.19 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=65.4
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Q 000159 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLND---GTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~D---s~~~VR~aA~~al~~l~ 473 (2013)
..+..+.+..|..-++++||.+...++..|..|+.+++........ +.++..+.+.+.. .+++||..+.+.+....
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 3566778888888899999999999999999999999875322222 3566667777765 58899999999999999
Q ss_pred HHhCch
Q 000159 474 KSVGMR 479 (2013)
Q Consensus 474 ~~~Ge~ 479 (2013)
..++..
T Consensus 112 ~~f~~~ 117 (133)
T cd03561 112 ESFGGH 117 (133)
T ss_pred HHhcCC
Confidence 988863
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=83.90 E-value=1.1e+02 Score=40.64 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=82.4
Q ss_pred ChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHH--HHHHHHhcCCCChhhHHHHHHHHHHHhc
Q 000159 927 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (2013)
Q Consensus 927 g~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl--~~ll~--~l~~~L~~~k~~p~~R~~~l~~L~~~l~ 1002 (2013)
...+++.+..++|+++.+|+.....||..+++.|..+-..+.- .--+| .+....++++.++.+|...+-|+..-++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 4568899999999999999999999999999999999888753 22344 5666666654458899999999988777
Q ss_pred cCCCCCChhhhHHHHHhhcCCCC---hHHHHHHHHHHHHHHHHc
Q 000159 1003 GLSGFPDAAHLLKPASIAMTDKS---SDVRKAAEACIVEILRAG 1043 (2013)
Q Consensus 1003 ~~~~~~~~~~ll~pl~~~L~D~~---~dVR~aA~~~L~~l~~~~ 1043 (2013)
..+.. +-.++++.++.++.... .++.......+..+.+..
T Consensus 94 Rl~~~-e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~ 136 (501)
T PF13001_consen 94 RLDDE-ERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLL 136 (501)
T ss_pred cCCHH-HHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcC
Confidence 66432 34566777888886443 333333333444444443
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=83.89 E-value=30 Score=44.71 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=104.4
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch-hHHHHHHHHH---HHHHHHHHh----Chh
Q 000159 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLI---TLGAVASAM----GPA 929 (2013)
Q Consensus 858 ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~---~l~~La~al----g~~ 929 (2013)
+.+.+-+.+-..|.+||+.|+. ...+++|++.|...+.+. ..+|++.-+. .+-.++.++ --.
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 3445666889999999888862 122578888888877654 2333332222 222333333 223
Q ss_pred hHhhhhhHHHHHHHHhCC----------CcHHHHHHHHHHHHHHHHhcC--c----hhhHHHHHHHHhcCCCChhhHHHH
Q 000159 930 VEKSSKGVLSDILKCLGD----------NKKHMRECTLTVLDAWLAAVH--L----DKMVPYVTTALTDAKLGAEGRKDL 993 (2013)
Q Consensus 930 ~~~~~~~llp~ll~~L~D----------~k~~Vr~aa~~aL~~i~~~~g--l----~~ll~~l~~~L~~~k~~p~~R~~~ 993 (2013)
+++|+..++|.++.|+-. +.=.+|+-|...+..++...+ + .+++..+..+|.+.+.......++
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGa 361 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGA 361 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhH
Confidence 789999999999999864 334599999999999998876 2 345555666666553345556666
Q ss_pred HHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChH---HHHHHHHHHHHHHHHcCh
Q 000159 994 FDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSD---VRKAAEACIVEILRAGGQ 1045 (2013)
Q Consensus 994 l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~d---VR~aA~~~L~~l~~~~G~ 1045 (2013)
+..|.+.-...-. .+.+.....-+...+.+.+.. ....|..+...|..+...
T Consensus 362 i~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 362 IAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 6666543221111 122222222233334433332 255666666666666554
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=83.65 E-value=36 Score=51.00 Aligned_cols=183 Identities=13% Similarity=0.167 Sum_probs=122.6
Q ss_pred CCHHHHHHHHHHHHHHhc----CCCCCCCCh-HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHH
Q 000159 297 TKWSERKDAVAELTKLAS----TKRIAPGDF-TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (2013)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~----~pki~~~~~-~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (2013)
.+=..+.-|++.|++++- ...+..-.+ .++++-|..++. ..+..|....++|+..|...-+..+..-++.++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 355578888888887662 222222222 378888888777 66778999999999999988888888889999998
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHh--cCC------ChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcC------
Q 000159 371 LLEKLKEKKPTVAESLTQTLQAMHKA--GCL------NLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSS------ 435 (2013)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~ai~~~--~~~------~l~~il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~------ 435 (2013)
+--.++++.+.+++.+.+++..|+.. .+. .+.+++..+....+++ +..+-..++.+|..|.....
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~ 1308 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGS 1308 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccc
Confidence 88888999999999999999988765 111 1223344443333333 35566667777765522110
Q ss_pred -----------------------------hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 436 -----------------------------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 436 -----------------------------~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
......+.=.++-.+.++..|..++||..|.+.|-.+....|..
T Consensus 1309 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1309 SSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred cccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 00000112223344455678999999999999998888888863
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=83.17 E-value=19 Score=38.94 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=73.5
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHHH
Q 000159 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 371 (2013)
+.+.+|.- +.++..+++.. +..-.+.+++|+++|+..|.+|...|+.++..+.+.-|..|... .+.++..|
T Consensus 14 l~~~dw~~----ileicD~In~~---~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 14 NREEDWEA----IQAFCEQINKE---PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCCCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 46788864 44455544321 22345789999999999999999999999999999999999755 35778888
Q ss_pred HHHhcc------CcHHHHHHHHHHHHHHHHh
Q 000159 372 LEKLKE------KKPTVAESLTQTLQAMHKA 396 (2013)
Q Consensus 372 L~klkd------kk~~V~~aa~~aL~ai~~~ 396 (2013)
++.+.. ....|++-+...+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 887753 4578999998888888764
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.47 E-value=7.4 Score=48.33 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=95.5
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhh-Hhhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV-EKSS 934 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~-~~~~ 934 (2013)
.+++.++.-.|-++|++|+..+.+++.. +..+.-..+.+++..+..++.|-...|+....+++..+...+++.- .+++
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 4788899999999999999999999974 3333333357888888999999999999999999999888777664 7888
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000159 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
..+++.+...+...-+.||.-+...+.-++..++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 8999999999999999999999999998888886
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=82.41 E-value=8.5 Score=42.85 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=68.1
Q ss_pred hhhHhHHHHHHHHhccCc------------------HHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHH
Q 000159 362 GSSRFLLPVLLEKLKEKK------------------PTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRS 421 (2013)
Q Consensus 362 ~~~~~llp~LL~klkdkk------------------~~V~~aa~~aL~ai~~~--~~~~l~~il~~l~~~l~~Knp~vR~ 421 (2013)
++...++|.++..++-++ -.+|.++.+|+.+++.. +...+..+++.+..|+.+ ...+|.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 456677777776665544 35999999999999987 234577889999999999 999999
Q ss_pred HHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh
Q 000159 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (2013)
Q Consensus 422 ~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l 454 (2013)
-|...|.++....+. .+...++.+++.+.+.|
T Consensus 84 L~~~~l~kl~~~~p~-~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 84 LCHLMLSKLAQLAPE-EVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHS-HH-HHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHh
Confidence 999999998776544 44455788888888777
|
; PDB: 4A0C_A 1U6G_C. |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.17 E-value=18 Score=43.26 Aligned_cols=170 Identities=13% Similarity=0.124 Sum_probs=106.3
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHh
Q 000159 290 FWEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~pki~--~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 366 (2013)
+.+.+.+.+-+.|..|+..|..+.....-. -..| +...+...+. ..|+.+...++++|..|. .-.++...+..
T Consensus 59 I~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~ 134 (254)
T PF04826_consen 59 IGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLAN 134 (254)
T ss_pred HHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHh
Confidence 334467777788999999998876321110 0123 3334444444 568888888999998885 33444555667
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-----HHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChh---
Q 000159 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-----VVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKA--- 437 (2013)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~-----il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~~--- 437 (2013)
.+|.++..+...+..++..+..+|..+..+ ..-..+ ++..+..-++.+ +..+-..++.|+.++-..+.+.
T Consensus 135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~ 213 (254)
T PF04826_consen 135 YIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYV 213 (254)
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccce
Confidence 788888888887888888777777777654 111111 223344334433 4567778888888765543221
Q ss_pred ---------HHH---HhhhhHHHHHHHHhcCCCHHHHHH
Q 000159 438 ---------AVL---KVHKDYVPICMECLNDGTPEVRDA 464 (2013)
Q Consensus 438 ---------~l~---~~l~~l~p~l~k~l~Ds~~~VR~a 464 (2013)
.+. .-.+.+...+.....++|++||+.
T Consensus 214 ~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 214 FVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred eccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 111 223567778888889999999874
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=82.15 E-value=17 Score=41.50 Aligned_cols=115 Identities=14% Similarity=0.052 Sum_probs=82.8
Q ss_pred hhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH--
Q 000159 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL-- 440 (2013)
Q Consensus 363 ~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~-- 440 (2013)
-+..+++.+++.+-.++..||..+...+..+...|-+++..++|.|++-..+.++.+|..+...+....++++.-...
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356788899999999999999999999999998877888999999998888999999999999999988887542221
Q ss_pred -HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000159 441 -KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 441 -~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~G 477 (2013)
+.++.....-..+-.|.....+......+..++..++
T Consensus 85 ~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 85 SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 2222222222333345444333335555666666655
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.01 E-value=2.1e+02 Score=38.91 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhhhcChh---hhHHHHHHHHHHHhhhChhHH---HHHHHHHhh-hCCChhHHHHHHHHHHHHHHHhC---
Q 000159 681 CVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMK-DHKNPKVLSEGILWMVSAVEDFG--- 750 (2013)
Q Consensus 681 ~~~~il~~LveKlgD~K---~r~~a~e~L~~l~e~~~~~~V---l~~L~~~l~-~~KnpKv~~~~l~~L~~li~~fG--- 750 (2013)
.+...|+.|+|++-... -|..|...|.+++..+..... +..++..+. +-.+|.....+|..+..++..-.
T Consensus 19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 46667788888877653 366777777777766543221 111112111 12355555555555555543210
Q ss_pred ----CC-C-----------CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh
Q 000159 751 ----VS-H-----------LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2013)
Q Consensus 751 ----~~-~-----------l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2013)
.. . +.-+..|..+... ++..|=.||..|++++..+-.+-|..++..+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~-~e~~DF~VR~~aIqLlsalls~r~~e~q~~l 161 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQS-LEEFDFHVRLYAIQLLSALLSCRPTELQDAL 161 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHH-HHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence 00 0 1113456666666 8888999999999999999998887776554
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.98 E-value=22 Score=45.75 Aligned_cols=196 Identities=17% Similarity=0.131 Sum_probs=123.7
Q ss_pred hhhhccCCHHHHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH
Q 000159 291 WEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (2013)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~-pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 369 (2013)
....++++-+.|+..+.-|+-+.+. ..|...-|..|...|.+++-|-.+.|+.+|..|+..+-. +.-+=+.....++-
T Consensus 97 lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe-~~~neen~~~n~l~ 175 (885)
T COG5218 97 LRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE-MELNEENRIVNLLK 175 (885)
T ss_pred HhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-ccCChHHHHHHHHH
Confidence 3456889999999999988888754 345555677888888888889999999999999988763 33332344444444
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2013)
.++. -|+...||.++ |..+... ..+. |.|++-..+-+...|.. +-.+|+...+.......-|.+. .
T Consensus 176 ~~vq--nDPS~EVRr~a---llni~vd-nsT~----p~IlERarDv~~anRr~---vY~r~Lp~iGd~~~lsi~kri~-l 241 (885)
T COG5218 176 DIVQ--NDPSDEVRRLA---LLNISVD-NSTY----PCILERARDVSGANRRM---VYERCLPRIGDLKSLSIDKRIL-L 241 (885)
T ss_pred HHHh--cCcHHHHHHHH---HHHeeeC-CCcc----hhHHHHhhhhhHHHHHH---HHHHHhhhhcchhhccccceeh-h
Confidence 4433 46777787654 3322211 1223 33444334444444443 3356666554322222223333 7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHh
Q 000159 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (2013)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~ 501 (2013)
+..+++|..-.||.|+..++..-...--+-.+-.+++.||-.+++-....++
T Consensus 242 ~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik 293 (885)
T COG5218 242 MEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIK 293 (885)
T ss_pred hhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHH
Confidence 7889999999999999999876655444444667888888776664444443
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=81.96 E-value=27 Score=46.02 Aligned_cols=126 Identities=15% Similarity=0.205 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh
Q 000159 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403 (2013)
Q Consensus 324 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~ 403 (2013)
.+.+.++...+.|..+.|+..|++-|-.+++.-. .++..+.-.|...|..-.+..++++..+|..++.. ....
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~---d~k~ 130 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ---DPKG 130 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc---CcHH
Confidence 4678888899999999999999999999887633 35666777777778788888899999999999986 3334
Q ss_pred HHHHHHHHhh---cCChHHHHHHHHHHHHHHHhcChhHHH--H-hhhhHHHHHHHHhcC
Q 000159 404 VVEDVKTSVK---NKVPLVRSLTLNWVTFCIETSSKAAVL--K-VHKDYVPICMECLND 456 (2013)
Q Consensus 404 il~~l~~~l~---~Knp~vR~~~l~~L~~~l~~~~~~~l~--~-~l~~l~p~l~k~l~D 456 (2013)
.+..|+..+. +....+|..++.||..-+.......+. + .-.-++..+.+.|.|
T Consensus 131 tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 131 TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 4444443333 556789999999998777655443332 1 224466778888888
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.91 E-value=22 Score=51.09 Aligned_cols=191 Identities=17% Similarity=0.180 Sum_probs=136.3
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHh
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~--~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 366 (2013)
...+++.-++=+.|..|+.+|..+++...... +-+......+.+.+.|-+..|+....+++..+..++++...||.+.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 34455666777788999999999885332221 2366677788888889999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------CC-ChHhHHHHH----------------HHHhhcCChHHHH
Q 000159 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------CL-NLVDVVEDV----------------KTSVKNKVPLVRS 421 (2013)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~ai~~~~--------~~-~l~~il~~l----------------~~~l~~Knp~vR~ 421 (2013)
++|..+-..-|.-..|..+|.+.+...+.-. |. .+-.++.++ .+.++.|-+++..
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ 204 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVIS 204 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHH
Confidence 9999999988988889988888887665420 10 011111111 1234567788888
Q ss_pred HHHHHHHHHHHhcChh-HHH---Hhhhh--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 422 LTLNWVTFCIETSSKA-AVL---KVHKD--YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 422 ~~l~~L~~~l~~~~~~-~l~---~~l~~--l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
.++..+...+...... .+. ...+. -...+-+.+.+..|.+|.+..+++-.+.+.+-..
T Consensus 205 ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 205 SSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred HHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 8888888888544321 111 11122 2345678889999999999999998887665544
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=81.80 E-value=18 Score=44.01 Aligned_cols=138 Identities=13% Similarity=0.203 Sum_probs=105.8
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc----ch--hhhHhHHHHHHHHhc--------cCcHHHHHHH
Q 000159 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FS--GSSRFLLPVLLEKLK--------EKKPTVAESL 386 (2013)
Q Consensus 321 ~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~----f~--~~~~~llp~LL~klk--------dkk~~V~~aa 386 (2013)
..+.-+++.+...+.|....+...+|+|+..|...+... |. .+...+..++...+- +....+...+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 346678889999999999999999999999999876533 33 347777777887777 7778889999
Q ss_pred HHHHHHHHHh----c----CCChHhHHH-HHHHHhhc--C--ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHH
Q 000159 387 TQTLQAMHKA----G----CLNLVDVVE-DVKTSVKN--K--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (2013)
Q Consensus 387 ~~aL~ai~~~----~----~~~l~~il~-~l~~~l~~--K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 453 (2013)
..|+..++.. + ...+.+++- .|+..+.+ + .+.++...++.+..++...+.. ..++++.+++.+...
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 9999998663 0 122445553 36666652 3 5899999999999999886654 347889999999999
Q ss_pred hcCCCH
Q 000159 454 LNDGTP 459 (2013)
Q Consensus 454 l~Ds~~ 459 (2013)
+.+.+.
T Consensus 274 l~npf~ 279 (282)
T PF10521_consen 274 LENPFG 279 (282)
T ss_pred hcCCCc
Confidence 988753
|
|
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.37 E-value=24 Score=43.97 Aligned_cols=109 Identities=16% Similarity=0.247 Sum_probs=82.4
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHhH
Q 000159 330 LKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDV 404 (2013)
Q Consensus 330 L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~-----~~l~~i 404 (2013)
|...++.-|.+|+..|+.-|..+-..--.....+...+++.+.+.+-|....||++...+++.++-..| ....-+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 334556677777777777777766552222334666788888888999999999999999998765422 122446
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000159 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (2013)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (2013)
++.+..+|.|-.|.+|..++.||..++..+++..
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 7888899999999999999999999999987653
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=81.08 E-value=6.4 Score=39.39 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=64.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHH
Q 000159 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (2013)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~ 484 (2013)
++.++.-+.+..+.+|...+..|..++..... -....+.++..+...+.|.++=|=-+|.++|..++...+++.+..+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~--~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSE--PVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCc--chhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 44455566788899999999999999987661 1123578889999999999999999999999999999998766555
Q ss_pred Hh
Q 000159 485 IE 486 (2013)
Q Consensus 485 l~ 486 (2013)
++
T Consensus 83 ~~ 84 (92)
T PF10363_consen 83 LD 84 (92)
T ss_pred HH
Confidence 44
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=81.03 E-value=4.9 Score=45.85 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=59.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhC
Q 000159 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (2013)
Q Consensus 129 v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (2013)
-+..+++.+.+.+++++..++..+..+++ +|. ++|+..+|.+..+..++|+.||+.|..+..+++.--+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~-qGL--vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR-QGL--VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cCC--CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 34566777889999999999999988877 687 6899999999999999999999999999998885554
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=80.70 E-value=25 Score=45.28 Aligned_cols=177 Identities=14% Similarity=0.110 Sum_probs=108.1
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhh---hc----chhhhH
Q 000159 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLR---TH----FSGSSR 365 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~---~~----f~~~~~ 365 (2013)
+.+.+=..|.+||+.|+. ...++.+++-+...|. ....+|+..-+..|-.|-+..+ ++ .++|+.
T Consensus 216 ~~g~~~~~r~eAL~sL~T--------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh 287 (576)
T KOG2549|consen 216 CTGSDEPLRQEALQSLET--------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLH 287 (576)
T ss_pred HhcCCHHHHHHHHHhhcc--------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHH
Confidence 456888899999998743 2346778888887777 3344455444444444443333 22 579999
Q ss_pred hHHHHHHHHhccCcHH----------HHHHHHHHHHHHHHhcCCC---h-HhHHHHHHHHhh-c-CChHHHHHHHHHHHH
Q 000159 366 FLLPVLLEKLKEKKPT----------VAESLTQTLQAMHKAGCLN---L-VDVVEDVKTSVK-N-KVPLVRSLTLNWVTF 429 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~----------V~~aa~~aL~ai~~~~~~~---l-~~il~~l~~~l~-~-Knp~vR~~~l~~L~~ 429 (2013)
.++|.++.++-.++-. +|+=+...+..++.+..+. + ..|+..+..++. + +.+...-+++.-|..
T Consensus 288 ~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 288 QLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred HHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 9999999998776542 7888888888888772212 2 345555555554 3 567888888877766
Q ss_pred HHHhcChhHHHHhhhhHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHhCc
Q 000159 430 CIETSSKAAVLKVHKDYVPICMECLNDGTP---EVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 430 ~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~---~VR~aA~~al~~l~~~~Ge 478 (2013)
+-...-...+.+.++.+.--+...+++... -.+..|..+.+.|.++...
T Consensus 368 lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 368 LGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred hhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 433221222223345554455444543333 2366677777776666543
|
|
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=80.43 E-value=8.9 Score=40.38 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=50.3
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh---HHHHHHHHh--------cCCCHHHHHHHHH
Q 000159 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD---YVPICMECL--------NDGTPEVRDAAFS 467 (2013)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~---l~p~l~k~l--------~Ds~~~VR~aA~~ 467 (2013)
..+.++++.|..-|++++|.||.-+|..|..++..-+.. +...+.. ++..+...- +|....||++|.+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 345677888888888888999888999888887765433 3322222 333333322 4556789999999
Q ss_pred HHHHHH
Q 000159 468 VLAAIA 473 (2013)
Q Consensus 468 al~~l~ 473 (2013)
++..+.
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 998775
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.33 E-value=9.6 Score=49.71 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=99.3
Q ss_pred HhcccchhHHHHHHHHHHHHHHHHHhChhh-----HhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh----cC---
Q 000159 901 RGRLYDSNKNLVMATLITLGAVASAMGPAV-----EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA----VH--- 968 (2013)
Q Consensus 901 ~~rL~DsN~~V~~~Al~~l~~La~alg~~~-----~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~----~g--- 968 (2013)
-.-|+-.|.+|+..|+.++=.+..--|++. +..+..=+-.+.+.|.|.-+.||..|+..+..+... .+
T Consensus 180 ~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i 259 (1005)
T KOG1949|consen 180 WRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI 259 (1005)
T ss_pred HHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 344577899999999998888877777764 344444556778899999999999998877665543 22
Q ss_pred chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000159 969 LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 969 l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~ 1041 (2013)
+..++..|.+-+.... ..++|..+.+.|...+..-...+-+..+++.+--.|.|.+..||-++...|..+-.
T Consensus 260 ~~~ll~kI~d~~a~dt-~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 260 LIDLLKKITDELAFDT-SSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHhhhcc-chheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 2344445555555432 36899999998887665322223345555557778999999999999998876643
|
|
| >PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs) | Back alignment and domain information |
|---|
Probab=80.29 E-value=14 Score=40.74 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=61.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhcc--------cchh---HHH------HHHHHH
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRL--------YDSN---KNL------VMATLI 917 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~--~~I~~~~~~eL~~~L~~rL--------~DsN---~~V------~~~Al~ 917 (2013)
+.+..+.+.+=++|..|++.|..++.... ..+....|+.++.+|...+ ...+ ... ...+..
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 56788999999999999999999997432 4555556788888886654 1111 121 233444
Q ss_pred HHHHHHHHhChhhH-hhhhhHHHHHHHHhCCCc
Q 000159 918 TLGAVASAMGPAVE-KSSKGVLSDILKCLGDNK 949 (2013)
Q Consensus 918 ~l~~La~alg~~~~-~~~~~llp~ll~~L~D~k 949 (2013)
++..++...-+.|. +.+..++..|++.|.+..
T Consensus 88 ~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 44444444434443 456778888888887777
|
Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.27 E-value=14 Score=49.57 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=121.7
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHh--ccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEE--ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~--a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
.+.+..+.|+.--+|-.|+..+..+++. ....+. -..++.++...|.|-+..|...|++.+..++.. |
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~---~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQ---GEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhh---HHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------c
Confidence 4567778888888999999999999982 111222 245788889999999999999998877777755 5
Q ss_pred hhhHHHHHHHHhCCCcH----HHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhcc
Q 000159 934 SKGVLSDILKCLGDNKK----HMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (2013)
Q Consensus 934 ~~~llp~ll~~L~D~k~----~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~ 1003 (2013)
-+.++|.+.+-+...|+ ..|--+-+++..+++..| .+.++..+...+.++ .-.-|...+..+..+...
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP--DHEFRASSLANLGQLCQL 877 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHH
Confidence 56788888885544332 234444466777777766 233444444444433 123487777776665543
Q ss_pred CCC--CCChhhhHHHHHhhc-CCCChHHHHHHHHHHHHHHHHcChhH
Q 000159 1004 LSG--FPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQET 1047 (2013)
Q Consensus 1004 ~~~--~~~~~~ll~pl~~~L-~D~~~dVR~aA~~~L~~l~~~~G~~~ 1047 (2013)
... +..+.+.+..++... .|...-||.+|...+..+....|++.
T Consensus 878 ~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 878 LAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 321 223344445555543 79999999999999999999999764
|
|
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=80.07 E-value=9.5 Score=40.15 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh---C---
Q 000159 873 SIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---G--- 946 (2013)
Q Consensus 873 ale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L---~--- 946 (2013)
.+++|.++..+ .+..+.+++..|.+||+|.+..|...+|++|..++..-...|...++.-...|-.+. +
T Consensus 21 ~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~D 95 (122)
T cd03572 21 LYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPD 95 (122)
T ss_pred HHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 34455555432 233468999999999999999999999999999998888888776665544333322 2
Q ss_pred -----CCcHHHHHHHHHHHHHHHH
Q 000159 947 -----DNKKHMRECTLTVLDAWLA 965 (2013)
Q Consensus 947 -----D~k~~Vr~aa~~aL~~i~~ 965 (2013)
+....||.+|.+++..+..
T Consensus 96 p~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 96 PLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cccCcchhHHHHHHHHHHHHHHhc
Confidence 2345699999998887764
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2013 | ||||
| 2of3_A | 266 | Tog Domain Structure From C.Elegans Zyg9 Length = 2 | 7e-26 | ||
| 2qk2_A | 242 | Structural Basis Of Microtubule Plus End Tracking B | 2e-09 | ||
| 4ffb_C | 278 | A Tog:alphaBETA-Tubulin Complex Structure Reveals C | 8e-06 | ||
| 2qk1_A | 249 | Structural Basis Of Microtubule Plus End Tracking B | 5e-05 |
| >pdb|2OF3|A Chain A, Tog Domain Structure From C.Elegans Zyg9 Length = 266 | Back alignment and structure |
|
| >pdb|2QK2|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215 And Eb1 Length = 242 | Back alignment and structure |
|
| >pdb|4FFB|C Chain C, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 278 | Back alignment and structure |
|
| >pdb|2QK1|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 244 bits (624), Expect = 2e-73
Identities = 66/255 (25%), Positives = 134/255 (52%)
Query: 1133 NVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLE 1192
K ++ +++ + ++ F+ P E I +L+ + + L +L DFK+ + L+
Sbjct: 9 EDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALD 68
Query: 1193 MLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252
L + + + ++ D+LL+W L+F ++N L+KVLE + + +RD +++
Sbjct: 69 SLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128
Query: 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECV 1312
E + F+P L+ K+G + +R +R++ + + K P +L+ L+SKN R R EC+
Sbjct: 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECL 188
Query: 1313 DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372
++ + I + G L + VA ++D +R AA+N L +K G+ +W+ G+
Sbjct: 189 LVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248
Query: 1373 LTDAQKSMLDDRFKW 1387
+ D KS++++R K
Sbjct: 249 MADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 93.3 bits (231), Expect = 8e-21
Identities = 50/261 (19%), Positives = 104/261 (39%), Gaps = 12/261 (4%)
Query: 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621
KK +++ KL + P++ + ++++ LG+ + QL +K+ L A
Sbjct: 8 NEDKKQRIKEEKQLKLVKWNFQ-APTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAA 66
Query: 622 ISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN----YLAATATK 676
+ SL + + L + ++L++ + + E N +V+E+ + T T
Sbjct: 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLR--FFETNPAALIKVLELCKVIVELIRDTETP 124
Query: 677 FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKV 734
++ V + + + + K R + S+ VGP + L +K KN +
Sbjct: 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK-SKNARQ 183
Query: 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
SE +L + + + G+S LK + + RNA I +L A KF G +
Sbjct: 184 RSECLLVIEYYITNAGISPLKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQM 242
Query: 795 KGFLADVKPALLSALDAEYEK 815
+ S ++ ++
Sbjct: 243 WKAAGRMADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 92.5 bits (229), Expect = 2e-20
Identities = 34/225 (15%), Positives = 76/225 (33%), Gaps = 6/225 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
+S+ + LL K+ +L HK++K A L L D+ + L
Sbjct: 36 ISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLR 95
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGR----YAKEVCDAIAAKCLTGRPKTVEKAQAV 116
++N K L+ ++ + K + + +
Sbjct: 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDI 155
Query: 117 FMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPEL 176
+ ++ ++ A+K+K A+ + V+ ++ G + + K +
Sbjct: 156 VNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPF 215
Query: 177 FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
+D NVR ++ + + ++ G K +M D K +E
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEGDQMWK--AAGRMADKDKSLVE 258
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 1e-16
Identities = 40/228 (17%), Positives = 89/228 (39%), Gaps = 11/228 (4%)
Query: 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD 906
+ + + +L+ L D+K L +++++ ++ + + + + L R ++
Sbjct: 40 QTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFE 98
Query: 907 SNKNLVMATLITLGAVASAM----GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962
+N ++ L + + P ++ + +L G+ K +MR +++
Sbjct: 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNV 158
Query: 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSK--QLTGLSGFPDAAHLLKPASIA 1020
V KM P + AL A R + + G+S + + K +
Sbjct: 159 LSDVVGPLKMTPMLLDALKSKN--ARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPF 215
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1068
+ DK +VR AA +V + G + + K + +L+ ERIK
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEG-DQMWKAAGRMADKDKSLVEERIK 262
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 2e-16
Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 10/228 (4%)
Query: 282 LTPLEKSGFWEGVKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIA 340
L K + + + A+ L + ++ R + + + + N A
Sbjct: 43 LGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPA 102
Query: 341 VAVEAIQAIGNLARGLRTH----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396
++ ++ + +R +P LL K E K + S+ + +
Sbjct: 103 ALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV 162
Query: 397 GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND 456
+ + ++K+K RS L + + I + + + + D
Sbjct: 163 VGPLKM--TPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK--SLSVEKTVAPFVGD 218
Query: 457 GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504
VR+AA +VL A K G + + ++ ++ D ++ + E I +G
Sbjct: 219 KDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERIKRTG 265
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 208 bits (529), Expect = 3e-60
Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 21/272 (7%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALC-----DSITDPKDNRIRELGP 55
MS EE+ + LP E+RL +K WK R EA +L L D D
Sbjct: 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPT 58
Query: 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAK------EVCDAIAAKCLTG-RPK 108
LF + + DSN Q++A+ AL + + A + + + A + K LT R
Sbjct: 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT 118
Query: 109 TVEKAQAVFMLWVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPK 167
T ++ + + L+ ++ ++++ + K+ K + A + +++ ++ FG + +
Sbjct: 119 TKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQ 178
Query: 168 ----RILKMLPELFDHQDQNVRASSKGLTLELCRWIG--KDPVKTILFEKMRDTMKKELE 221
+LK +P+L H D+NVR+ + L +E+ + G D ++ ILF+K++ K+L
Sbjct: 179 TFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238
Query: 222 VELVNVSGTARPTRKIRAEQDKELGQELISED 253
V ++ + + +EL ++ E+
Sbjct: 239 KLFAKVGDEPSSSKMLFEWEKRELEKKRSQEE 270
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 98.7 bits (245), Expect = 2e-22
Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 35/270 (12%)
Query: 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSV 639
E+V+ + + LEE +L +WK RLEA L Q
Sbjct: 3 GEEEVDYTTLPLEE---------------RLTYKLWKARLEAYKELNQLFRNSVGDISRD 47
Query: 640 EILVRLVCMLPGW----SEKNVQVQQQVIEVINYL------AATATKFPKKCVVLCLLGI 689
+ + + ++ NV Q+Q I +N L ++ + +
Sbjct: 48 DNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLL 107
Query: 690 SERV---ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV 746
E+ + T+ +M C+ + L + K PK+++ + +
Sbjct: 108 VEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELM 167
Query: 747 EDFGVSHLKLKDLI-DFCKDTG--LQSSAAATRNATIKLLGALHKFVGPDI----KGFLA 799
FG++++ ++ + + K R+ T+ L+ ++K G + +
Sbjct: 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFK 227
Query: 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVR 829
+KP + L + K E +
Sbjct: 228 KLKPIQVKDLHKLFAKVGDEPSSSKMLFEW 257
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 2e-13
Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 25/264 (9%)
Query: 1175 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-----SNTTCLL 1229
L RL +K +++ + L + + DI +I + W SN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 1230 KVLEFLPELFDTLRDEGYSLTE--SEAAVFLPCLVEKS-GHNIEKVREKMRELTKQIVNF 1286
+ + L L D + + + P LVEK + + + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 1287 -YSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV----ASLTA 1341
S T+++ ++ K + + V L+ G L + L
Sbjct: 134 DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG 193
Query: 1342 ERDGEIRKAALNTLATGYKILGEDIWR----YVGKLTDAQKSMLDDRFKWKVREMEKKKE 1397
D +R +N + YK+ G + KL Q L F K
Sbjct: 194 HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLF--------AKVG 245
Query: 1398 GKPGEARAALRRSVRENGSDIAEQ 1421
+P ++ RE +++
Sbjct: 246 DEPSSSKMLFEWEKRELEKKRSQE 269
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 5e-13
Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 16/216 (7%)
Query: 298 KWSERKDAVAELTKLASTKRIAPGD------FTEVCRTLKKLITDVNIAVAVEAIQAI-- 349
W R +A EL +L + + ITD N+ +AI A+
Sbjct: 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNS 81
Query: 350 ----GNLARGLRTHFSGSSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404
+ H P+L+EK L + T + ++ ++
Sbjct: 82 LIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL-DTSITQS 140
Query: 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIET--SSKAAVLKVHKDYVPICMECLNDGTPEVR 462
VE V + K+P + + N V + + V + + + G VR
Sbjct: 141 VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVR 200
Query: 463 DAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 498
+++ I K G ++ ++ +
Sbjct: 201 SQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKD 236
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 3e-09
Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 24/266 (9%)
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF----GGLRGRLYDSNKNLVM 913
L + L WK RLE+ + +N++ + I +++ + DSN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 914 ATLITLGAVASAMGPAVEKSSKG-------VLSDILKCLGDNKKHMRECTLTVLDAWLAA 966
++ L ++ A + K++ + K L ++ + +++ + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 967 VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL-----TGLSGFPDAAHLLKPASIAM 1021
+ + KL + + + + + T ++ LLK
Sbjct: 134 DTSITQSVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA 192
Query: 1022 TDKSSDVRKAAEACIVEILRAGG------QETIEKNLKDIQGPALALILERIKLNGASQV 1075
+VR IVEI + G +E + K LK IQ L + ++ + S
Sbjct: 193 GHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVG-DEPSSS 251
Query: 1076 SMGPTSKSSSKVPKSASNGVSKHGNR 1101
M + K + + H +
Sbjct: 252 KMLFEWEKRELEKKRSQEEEAHHHHH 277
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 9e-58
Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 16/245 (6%)
Query: 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL--TKLASTKRI--APGDFTEV 326
++ IL L K F E + ++KW +R +A+ E + L+ TK++ +++ +
Sbjct: 3 HMASMLPEETILDKLPKD-FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL 61
Query: 327 CRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH--FSGSSRFLLPVLLEKLKEKKPTVA 383
+I D NI A Q++ + L+T + LL++ KEKKP+V
Sbjct: 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVI 121
Query: 384 ESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-- 436
E++ + L + K A D+++D+ +K+K P +R ++
Sbjct: 122 EAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181
Query: 437 -AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495
+ + VPI ++ +ND P +R F A + K GM +++E LD+++R K
Sbjct: 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKK 241
Query: 496 LSEMI 500
+ E +
Sbjct: 242 IEETV 246
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 6e-21
Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 20/244 (8%)
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT--GELFGGL 900
LP E I K + + S WK R+E++E + K+++ L G
Sbjct: 6 SMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIY 65
Query: 901 RGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTL 957
+ D+N V ++ + + V + +L + K + E
Sbjct: 66 GHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIR 125
Query: 958 TVL-------DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
L D ++ + M+ + + + R + + +
Sbjct: 126 KALLTICKYYDPLASSGRNEDMLKDILEHMKHKT--PQIRMECTQLFNASMKEEKDGYST 183
Query: 1011 AHLLKPASIA------MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL 1064
+ + D +R +++ G T K L+ + I
Sbjct: 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIE 243
Query: 1065 ERIK 1068
E +K
Sbjct: 244 ETVK 247
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 1e-16
Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 31/249 (12%)
Query: 1166 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-------EVLDILLRWFVL 1218
++ +D R+ S+ +K +V+ LE ++ S K + +L I
Sbjct: 12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ- 70
Query: 1219 QFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRE 1278
+N + + + + D L+ G+S + ++ L++++ V E +R+
Sbjct: 71 --KDANIQAVALAAQSVELICDKLKTPGFS--KDYVSLVFTPLLDRTKEKKPSVIEAIRK 126
Query: 1279 LTKQIVNFYSATKT-------LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLK 1331
I +Y + L ILE ++ K + R+EC L + S +
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186
Query: 1332 SLQ-----IVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFK 1386
L+ IV + + IR + A KI G K + LD+ +
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM---NTFVKTLEH----LDNLKR 239
Query: 1387 WKVREMEKK 1395
K+ E K
Sbjct: 240 KKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 2e-15
Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 20/235 (8%)
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGW--SEKN 656
+P D ++ S+ WK+R+EA+ V + L + + L+ + + N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 657 VQVQQQVIEVINYLAAT--ATKFPKKCVVLCLLGISERVADIKT--RAHAMKCLTTFSEA 712
+Q + + + F K V L + +R + K K L T +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 713 VGPGFIFERLYKIMKD------HKNPKVLSEGILWMVSAVEDFGVSHLKL-----KDLID 761
P R ++KD HK P++ E +++++ + L +++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGP-DIKGFLADVKPALLSALDAEYEK 815
+ + A R + L K G L + ++ +
Sbjct: 195 IVIQI-VNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 6e-08
Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 21/230 (9%)
Query: 12 KKLP--WEDRLLHKNWKVRNEA----NIDLAALCDSITDPKDNRIRELGPLFKKTVADSN 65
KLP +++R+ WK R EA + + + N LG D+N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 66 APVQDKALDALIAYLKA--ADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL 123
A ++ + Y V + + +P +E + + +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 124 -------EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP-----KRILK 171
+ L + + +K+K + + + ++ E ++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 172 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
++ ++ + +R L + G + L E + + +K++E
Sbjct: 195 IVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTL-EHLDNLKRKKIE 243
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 179 bits (454), Expect = 1e-50
Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 6/233 (2%)
Query: 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRT 329
+L+DPVDIL+ + K F++ ++ KW+ RK+++ L KL ++ G++ +
Sbjct: 2 SHMDLLDPVDILSKMPKD-FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSA 60
Query: 330 LKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQ 388
LKK+IT D N+ + A + + LA+GL FS + +P LLEK KEKKP V +L +
Sbjct: 61 LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALRE 120
Query: 389 TLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE-TSSKAAVLKVHKDYV 447
+ A++ +L E + S+ NK P V+S T ++ + T A K+ K
Sbjct: 121 AIDAIYA--STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLT 178
Query: 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500
++ LN+ P VRD++ L + K +G + + + +D ++ K+ E
Sbjct: 179 TSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQ 231
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 8/231 (3%)
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902
D L DI K LE W +R ES+E + K+L + +++ G L L+
Sbjct: 5 DLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKK 63
Query: 903 RLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
+ DSN LV L +A + + + +L+ + K ++ +D
Sbjct: 64 VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP----A 1017
A A+ L+ + +L++ + + ++++ LT LLK
Sbjct: 124 AIYASTSLEAQQESIVESLSNKN--PSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1068
+ + VR ++ + +++ G + + L D+ +A I E +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 9/226 (3%)
Query: 1166 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-SN 1224
D++ +D + +L + + + LE+L+K L K L+ K SN
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1225 TTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 1284
+ + L L L + A+ +P L+EK V +RE I
Sbjct: 71 VVLVAMAGKCLALLAKGLAKR----FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIY 126
Query: 1285 NFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE--ISGQLKSL-QIVASLTA 1341
S I+E L +KN + E + + LK L +
Sbjct: 127 ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN 186
Query: 1342 ERDGEIRKAALNTLATGYKILGED-IWRYVGKLTDAQKSMLDDRFK 1386
E D +R ++ L T K++G+ + + + + + + + +
Sbjct: 187 EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 2e-16
Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 7/216 (3%)
Query: 12 KKLP--WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVA-DSNAPV 68
K+P + D+L K W +R E+ L L ++ L KK + DSN +
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73
Query: 69 QDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDV 128
A L K YA ++ K +P V + +++
Sbjct: 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA 133
Query: 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVR 185
+ + +++ NK + +AL+ + K + L + + D VR
Sbjct: 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193
Query: 186 ASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
SS L + +G V +L + +++
Sbjct: 194 DSSAEALGTLIKLMGDKAVTPLL-ADVDPLKMAKIK 228
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 1e-15
Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 12/224 (5%)
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLPGWSEKNV 657
S +P D +L+ W R E++ L + + L+ ++ L ++ + NV
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI--TKDSNV 71
Query: 658 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGP 715
+ + + LA K C+ + E+ + K + + +
Sbjct: 72 VLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 716 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSA 772
E + + + +KNP V SE L++ A+ + L LK L L
Sbjct: 132 EAQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV-KTLNEPD 189
Query: 773 AATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSALDAEYEK 815
R+++ + LG L K +G + LADV P ++ + EK
Sbjct: 190 PTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEK 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 2e-16
Identities = 118/766 (15%), Positives = 233/766 (30%), Gaps = 249/766 (32%)
Query: 748 DF--GVSHLKLKDLI-----DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLAD 800
DF G + KD++ F + D K D
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF--------------------------DCK----D 37
Query: 801 VKPALLSAL-DAEY-----EKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854
V+ S L E K+ GT+ T+ + +E++ KF
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---------------QEEMVQKF 82
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914
V+ + ++K + I+ + QP+ ++ R RLY+ N+
Sbjct: 83 ----VEEVLRINYKFLMSPIKTEQR---------QPSMMTRMYIEQRDRLYNDNQ----- 124
Query: 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK---H-MRECTLTVLDAWLAAVHLD 970
+ V ++ K L L L K + T W+A
Sbjct: 125 -VFAKYNV-----SRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKT----WVAL---- 168
Query: 971 KMVPYVTTALTDAKLGAEGRKDLFD----WLS-----------KQLTGLSGFPDAAHLLK 1015
K+ + D WL+ + L L + +
Sbjct: 169 -------DVCLSYKV-----QCKMDFKIFWLNLKNCNSPETVLEMLQKLL------YQID 210
Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL------ERIK- 1068
P + +D SS+++ + E+ R K ++ L L+L +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYEN----CL-LVLLNVQNAKAWNA 261
Query: 1069 LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQS 1128
N + ++ + T++ V S + H S + P+ + S+
Sbjct: 262 FNLSCKILL--TTRFKQ-VTDFLSAATTTH-----ISLDHHSMTLTPDEVKSL------- 306
Query: 1129 QALLNVKDSNKED--RE---------RMVVRRFKFEDP-RIEQIQELENDMMKYFREDLH 1176
LL D +D RE ++ + + + + + D + E
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSL 363
Query: 1177 RRLLSTDFKKQVDGLEMLQKALPSIRKDI-IEVLDILLRWFVLQFCKSNTTCLLKVLEFL 1235
L +++K D L + + I +L ++ W + ++ V+ L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLI--W-----FDVIKSDVMVVVNKL 411
Query: 1236 PELFDTLRDEGYSLTE---SEAAVFLP-CLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1291
YSL E E+ + +P +E E L + IV+ Y+ K
Sbjct: 412 ---------HKYSLVEKQPKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPK 457
Query: 1292 TLPYILEGLRSKNNRTRIECVDLVGFL---IDHHGAEISGQLKSLQIVASLTAERDGEIR 1348
T ++ +D + I HH LK+++ ER R
Sbjct: 458 TFD---------SDDLIPPYLD--QYFYSHIGHH-------LKNIE-----HPERMTLFR 494
Query: 1349 KAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDD--RFKWKVREMEKKKEGKPGEARAA 1406
L+ ++ L + I R+ +A S+L+ + K + + K A
Sbjct: 495 MVFLD-----FRFLEQKI-RHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNA 547
Query: 1407 LRRSVRENGSDIAE-QSGDVSQSVSGPTLMRRN---YGHSELHVER 1448
+ + + ++ + D+ + LM + + + V+R
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRI----ALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.8 bits (201), Expect = 2e-15
Identities = 100/756 (13%), Positives = 204/756 (26%), Gaps = 249/756 (32%)
Query: 1154 DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR-KDIIEVLDIL 1212
D + Q D++ F + D K D +M + L II D +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF---DCK---DVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 1213 LRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272
LF TL + E F+ ++ N + +
Sbjct: 62 SGTLR--------------------LFWTLLSKQ----EEMVQKFVEEVLRI---NYKFL 94
Query: 1273 REKMRELTKQ---IVNFYSATKTLPYILEGLRSKNNRTRIECVD-----LVGFLIDH--- 1321
++ +Q + Y + Y + +K N +R++ L+ L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNV 153
Query: 1322 --HGAEISGQLKSLQIVASLTAE--RDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQ 1377
G SG K+ + + +++ +KI W + +
Sbjct: 154 LIDGVLGSG--KT-----WVALDVCLSYKVQCKM------DFKIF----WLNLKNCNSPE 196
Query: 1378 KSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRR 1437
+ EM +K L + N + ++ S ++ + R
Sbjct: 197 TVL----------EMLQK-----------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 1438 NYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDP 1497
S+ + L L
Sbjct: 236 RLLKSKPY------ENCL------------L----------------------------- 248
Query: 1498 EGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQ 1557
V+ V++A K F+ SCK L+ T + K++ +
Sbjct: 249 ---VLLN-VQNA---------KAWNAFNL--------SCK----ILLTT-RFKQVTDFLS 282
Query: 1558 ESTLDSLITELLLWLLDERVPHMDDGSQLL-KALNVLMLKILDNADRTSSFVV-LI-NLL 1614
+T + + L D+ LL K L+ + T+ + +I +
Sbjct: 283 AATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 1615 RPLDPSRWPSPASNESFAARNQ-RFSDLVVKCLIKLTKVLQSTIY--------DVD---- 1661
R + W +++ N + + ++ L L ++
Sbjct: 338 RD-GLATW------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 1662 -LDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHEL-----VKLRGAAIKGHLS 1715
L I + + + ++ + + + +P + + + VKL H S
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYAL-HRS 448
Query: 1716 MV----------PIDMKPQPI---ILAYIDLNLETLAAARMLTSTGPGGQT--------- 1753
+V D+ P + ++I L + +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHI---------GHHLKNIEHPERMTLFRMVFLD 499
Query: 1754 -HW-------GDSAANNPTSATNSADAQLKQELAAIFKKIG--DKQTCTIGLYELYRI-T 1802
+ +A N S N+ QLK I ++ I + L +I
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDF-LPKIEE 557
Query: 1803 QLY--PKVDI--FAQLQNASEAFRTYIRDGLAQMEK 1834
L D+ A L EA + Q+++
Sbjct: 558 NLICSKYTDLLRIA-LMAEDEA---IFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 2e-12
Identities = 100/735 (13%), Positives = 204/735 (27%), Gaps = 241/735 (32%)
Query: 242 DKELGQ-ELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
D E G+ + +D+ +D ++ D D+ +
Sbjct: 8 DFETGEHQYQYKDILS-------VFEDAFVDNFDCKDVQDMPKSILSK-----------E 49
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVC----RTLKKLITDV---NIAVAVEAIQAIGNLA 353
E + ++ T R+ F + ++K + +V N + I+
Sbjct: 50 EIDHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 354 RGLRTHFSGSSRFLL---PVLLEKL----KEKKPTVAESLTQ-------TLQAMHKAG-- 397
+ + R L + K + + ++L + + + +G
Sbjct: 106 SMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 398 CLNLVDVVED--VKTSVKNKVPLVRSLTLNWVTF--CIETSSKAAVL-----KVHKDYVP 448
+ +DV V+ + K+ W+ C + +L ++ ++
Sbjct: 165 WV-ALDVCLSYKVQCKMDFKI--------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD-- 506
+D + ++ S+ A + + + +P E + L +V+ K +
Sbjct: 216 -----RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLS 265
Query: 507 ----VATGTSS--ARVQTSGGSVPSVEASESSFVRKSAASMLS---GKRPVSAAPASKKG 557
+ T + + + S++ + S+L RP
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 558 GPVKPS----AKKDGSG------KQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607
P + S + +DG KLT E SL +E PA+
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------IESSLNVLE-------PAEY- 371
Query: 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
++ + + +V S I L+ ++ W + V+
Sbjct: 372 --------RKMFDRL--------SV--FPPSAHIPTILLSLI--WFDVIKSDVMVVVN-- 409
Query: 668 NYLAATATKFPKKCVVLC--------LLGISERV---ADIKTRAHAMKCLTTFSEAVGPG 716
K K +V + I + + + H
Sbjct: 410 --------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS------------- 448
Query: 717 FIFERLYKIMK----DHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-----------LID 761
I + Y I K D P L + HLK + +D
Sbjct: 449 -IVDH-YNIPKTFDSDDLIPPYLDQYFYS-------HIGHHLKNIEHPERMTLFRMVFLD 499
Query: 762 F-------CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE 814
F D+ +A + + L L + K ++ D P L
Sbjct: 500 FRFLEQKIRHDS----TAWNASGSILNTLQQLKFY-----KPYICDNDPK-YERLVNAIL 549
Query: 815 KNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESI 874
F +P + E+ I K+T L +L + D
Sbjct: 550 D--F----LP----KIEENL---------------ICSKYTDLLRIALMAED-------- 576
Query: 875 EAVNKILEEANKRIQ 889
I EEA+K++Q
Sbjct: 577 ---EAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 3e-10
Identities = 61/434 (14%), Positives = 138/434 (31%), Gaps = 134/434 (30%)
Query: 1496 DPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYA 1555
D E KD ++S + FD CK V + + + +
Sbjct: 8 DFETGEHQYQYKD---ILSVFEDAFVDNFD----------CKDVQDMPKSILSKEEIDHI 54
Query: 1556 VQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS-SFVVLINLL 1614
+ S T L W L + ++++ K ++ R + F L++ +
Sbjct: 55 IMSKDAVSG-TLRLFWTL------LSKQEEMVQ-------KFVEEVLRINYKF--LMSPI 98
Query: 1615 RPLDPSRWPSPASNESFAAR------NQRFSDLVV---KCLIKLTKVLQSTIYDVDLDRI 1665
+ R PS + R NQ F+ V + +KL + L R
Sbjct: 99 K--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-------LRP 149
Query: 1666 LQSIHVYLQELGM---------------EEIRRR---------AGADDKP---LRMVKTV 1698
+++ + G+ +++ + + P L M++ +
Sbjct: 150 AKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 1699 LHEL-------------VKLRGAAIKGHLSMVPIDMKPQP---IILAYIDL-NLETLAA- 1740
L+++ +KLR +I+ L + + KP ++L ++ N + A
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLL--NVQNAKAWNAF 262
Query: 1741 ---ARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKK-----IGD--KQT 1790
++L +T T + +A S + + E+ ++ K D ++
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 1791 CT-----IGL--------------YELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ 1831
T + + ++ +L ++ + +E +R L+
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDR-LSV 380
Query: 1832 MEKNAAAGRTPSSV 1845
+A P+ +
Sbjct: 381 FPPSA---HIPTIL 391
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 5e-10
Identities = 87/551 (15%), Positives = 161/551 (29%), Gaps = 148/551 (26%)
Query: 2 SEE-EKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
EE + ++ + RL W + ++ + + + L
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVLRI------NYKFLMSPI 98
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAK-EVCDAIAAKCLTGRPKTVEKAQAVFML 119
+ P I D +AK V R + K + +
Sbjct: 99 KTEQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNVS----------RLQPYLKLRQALL- 145
Query: 120 WVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG------AKIIPPKRILKM 172
EL A +V +D + + K VA V + V Q +F P+ +L+M
Sbjct: 146 --ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 173 LPELFDHQDQNVRASSKGL-TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG-- 229
L +L D N + S ++L + ++ +L K + L V L+NV
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLV-LLNVQNAK 257
Query: 230 -------------TARP---TRKIRAEQDKELGQELISEDVGPGPSEE--------STAD 265
T R T + A + + S + P + D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVK--ATKWSE-RKDAVAELTKL--ASTKRIAP 320
+P E+ + P S E ++ W + +LT + +S + P
Sbjct: 318 LPREV--------LTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 321 GDFTEVCRTLKKLITDVNIAVAV----------EAIQAIGNL--ARGLRTHFSGSSRFLL 368
++ ++ L +I + + + N L S +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN-------------- 414
P + +LK K A+H+ ++VD KT +
Sbjct: 429 PSIYLELKVKLE--------NEYALHR----SIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 415 ------------KVPLVRSLTLN--WV--------TFCIETSSKAAVL---KVHKDYVPI 449
++ L R + L+ ++ T + S L K +K Y+
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-- 534
Query: 450 CMECLNDGTPE 460
C ND E
Sbjct: 535 ---CDNDPKYE 542
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 1e-08
Identities = 89/607 (14%), Positives = 176/607 (28%), Gaps = 171/607 (28%)
Query: 582 EDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI 641
+D+ S +S EEI+ + S D V W + +++ VE V L + +
Sbjct: 39 QDMPKSILSKEEIDHIIMS---KDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKF 93
Query: 642 LVRLVCMLPGWSEKNVQ---VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKT 698
L+ + Q + + IE + L F K V + ++
Sbjct: 94 LMS------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQ 142
Query: 699 RA-----------HAMK-----CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 742
+ + + +K + I W+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVA--LDVC-------------LSYKVQCKMDFKIFWL 187
Query: 743 VSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 799
+ + L+ L ++ + ++ IKL +H + +++ L
Sbjct: 188 -----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHS-IQAELRRLLK 239
Query: 800 DVKP---ALLSALDAEYEK---NPFEG---TVVPKKTVRASESTSSVSSGGSDGLPREDI 850
KP LL L N F ++ T R + T +S+ + + +
Sbjct: 240 S-KPYENCLL-VLLNVQNAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHH 294
Query: 851 SGKFTPT-----LVKSLE-------------SP-----------DWKVRLE-----SIEA 876
S TP L+K L+ +P D + + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 877 VNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL---------GAVASAMG 927
+ I+E + ++PA ++F L ++ + ++ L + V + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 928 P--AVEKSSKG---VLSDI---LKCLGDNKK--HMR--------------ECTLTVLD-- 961
VEK K + I LK +N+ H + LD
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 962 -AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFD--WLSKQL-------TGLSGFPDAA 1011
HL + + R D +L +++ +
Sbjct: 473 FYSHIGHHLKNIEH--------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI-QGPALALILER--IK 1068
LK + D + A I++ L + I D+ + +AL+ E I
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLR---IALMAEDEAIF 580
Query: 1069 LNGASQV 1075
QV
Sbjct: 581 EEAHKQV 587
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 4e-15
Identities = 99/633 (15%), Positives = 198/633 (31%), Gaps = 89/633 (14%)
Query: 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--------MRPLERSIEKLDDVRRNKL 496
+ + ++ L + ++R + L+ IA ++G + L +I D+V L
Sbjct: 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL-AL 68
Query: 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 556
+E + V V + S+ E + VR A L + S
Sbjct: 69 AEQLGTFTTLVG---GPEYVHCLLPPLESLATVEETVVRDKAVESL--RAISHEHSPSDL 123
Query: 557 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV-- 614
P K+ G TS+ + R+ S + A+ ++
Sbjct: 124 EAHFVPLVKRLAGGDWFTSRTSAC--------GLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 615 --WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 672
R A S L + + ++ + EI+ + S++ V+ +E
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA---SDEQDSVRLLAVEA---CVN 229
Query: 673 TATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERL---YKIM 726
A P++ + ++ + A + R T +AVGP L ++ +
Sbjct: 230 IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 289
Query: 727 KDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLL 783
+V + + E+ + + ++ K+ + + ++A ++
Sbjct: 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVI 348
Query: 784 GALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843
L +G D + + P L+ L E + V + + + V
Sbjct: 349 MGLSPILGKDN--TIEHLLPLFLAQLKDECPE-------VRLNIISNLDCVNEV------ 393
Query: 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 903
+ +S P +V+ E W+VRL IE + + + +L
Sbjct: 394 -IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE---KLNSLCMAW 449
Query: 904 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963
L D + A L + G E + ++ +L GD R TL ++
Sbjct: 450 LVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507
Query: 964 LAAVHLD----KMVPYVTTALTD---------AKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
D M+P V D AK + + L
Sbjct: 508 SEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK----IGPILDNS--------TL 555
Query: 1011 AHLLKPA-SIAMTDKSSDVRKAAEACIVEILRA 1042
+KP D+ DV+ A+ + + A
Sbjct: 556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 3e-14
Identities = 71/477 (14%), Positives = 152/477 (31%), Gaps = 51/477 (10%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKAL 73
LP+ ++ +V L + P+ + L P + V+DKA+
Sbjct: 51 LPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE--YVHCLLPPLESLATVEETVVRDKAV 108
Query: 74 DALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVM 133
++L A + + + G T + +
Sbjct: 109 ESLRAISHEHSPSD---LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165
Query: 134 EKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVRASSKG 190
+ +N + L EF + I+ M L + +VR +
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVE 225
Query: 191 LTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 250
+ + + + ++ ++ ++ +R + + R + A++ EL + +
Sbjct: 226 ACVNIAQLLPQEDLEALVMPTLRQAAEDKSW-----------RVRYMVADKFTELQKAV- 273
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
PEI + +LV L K E A V E
Sbjct: 274 ----------------GPEITKTDLVP---AFQNLMKDCEAEVRAAAS-----HKVKEFC 309
Query: 311 KLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370
+ S +++ +K+L++D N V I L+ L + LLP+
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPL 367
Query: 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVT 428
L +LK++ P V ++ L +++ + + ++ + ++ VR + ++
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427
Query: 429 FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485
+ +CM L D +R+AA S L + + G +I
Sbjct: 428 LLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 2e-11
Identities = 59/482 (12%), Positives = 156/482 (32%), Gaps = 52/482 (10%)
Query: 590 SLEEIESRLGS------LIPADTVGQLKSAVWKE---RLEAISSLRQQVEAVQNLDQSVE 640
L I LG L+P L ++ E L L V +
Sbjct: 33 KLSTIALALGVERTRSELLPF-----LTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHC 87
Query: 641 ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRA 700
+L L + + + V+ + +E + ++ + + + + +R+A
Sbjct: 88 LLPPLESLA---TVEETVVRDKAVESLRAISH---EHSPSDLEAHFVPLVKRLAGGDWFT 141
Query: 701 HAMKCLTTFSEAVGPG-----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 755
FS + ++ + P V + + + ++K
Sbjct: 142 SRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK 201
Query: 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815
++I + + R ++ + + + + A V P L A + + +
Sbjct: 202 -SEIIPMFSN-LASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWR 257
Query: 816 NPFEGTVVPKKTVR--ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLES 873
VR ++ + + + E P ++ + +VR +
Sbjct: 258 ------------VRYMVADKFTELQKA----VGPEITKTDLVPAFQNLMKDCEAEVRAAA 301
Query: 874 IEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932
V + E + + ++ ++ + D+N+++ A + ++ +G +
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN 359
Query: 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEG--R 990
+ + +L L L D +R ++ LD + + ++ + A+ + A+ R
Sbjct: 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVR 419
Query: 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
+ +++ L L + D +R+AA + + +++ G+E
Sbjct: 420 LAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHA 479
Query: 1051 NL 1052
+
Sbjct: 480 TI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 3e-11
Identities = 77/461 (16%), Positives = 148/461 (32%), Gaps = 49/461 (10%)
Query: 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669
L++ + RL +I L A+ E+L L + + E V + +
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVL-----LALAEQ 71
Query: 670 LAATATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 726
L T V CLL E +A + R A++ L S P + ++
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV 131
Query: 727 K--DHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIK 781
K + + S S +K + + C D R A
Sbjct: 132 KRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD-----DTPMVRRAAAS 186
Query: 782 LLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841
LG K + D +++ P + E + V V A + + +
Sbjct: 187 KLGEFAKVLELDN--VKSEIIPMFSNLASDEQDS-------VRLLAVEACVNIAQL---- 233
Query: 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
LP+ED+ PTL ++ E W+VR + ++ + I +L +
Sbjct: 234 ---LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT---DLVPAFQ 287
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTV 959
+ D + A + + ++ +L I + + D +H++ +V
Sbjct: 288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347
Query: 960 LDAWLAAV-----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014
+ L+ + ++ ++P L D E R ++ L + + LL
Sbjct: 348 IMG-LSPILGKDNTIEHLLPLFLAQLKD--ECPEVRLNIISNLDCVNEVIGIRQLSQSLL 404
Query: 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055
D VR A + + G E ++ L +
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 2e-10
Identities = 63/466 (13%), Positives = 136/466 (29%), Gaps = 64/466 (13%)
Query: 22 HKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLK 81
VR A L + DN E+ P+F +D V+ A++A + +
Sbjct: 175 DDTPMVRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232
Query: 82 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKN-- 139
+ V + + F + ++ + A +N
Sbjct: 233 LLPQED--LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290
Query: 140 -----KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
+V A + + LS + + +IL + EL +Q+V+++ + +
Sbjct: 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350
Query: 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD--KELGQELISE 252
L +GKD L +K E V I + +G +S+
Sbjct: 351 LSPILGKDNTIEHLLPLFLAQLKDECP----EVRLNI-----ISNLDCVNEVIGIRQLSQ 401
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
+ P + L + KW R + + L
Sbjct: 402 SLLP------------------------AIVELAEDA--------KWRVRLAIIEYMPLL 429
Query: 313 ASTKRIAPGDFTE-VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371
A ++ F E + + D A+ A + L ++ ++P +
Sbjct: 430 A--GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATIIPKV 485
Query: 372 LEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVTF 429
L + + + + + ++ ++ V + V VR +
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 430 CIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
+ + + PI + D +V+ A L ++ +
Sbjct: 546 IGPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 3e-08
Identities = 88/640 (13%), Positives = 179/640 (27%), Gaps = 126/640 (19%)
Query: 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 827
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTIYDEDE------------- 63
Query: 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V + + + + + + P L + VR +++E++ I E
Sbjct: 64 VLLALAEQLGTF--TTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE---- 117
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLV-MATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946
P+ F L RL + + + AV+ +
Sbjct: 118 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE---LRQYFRNLCS 174
Query: 947 DNKKHMRECTLTVLDAWLAAV----HLDKMVPYVTTALTD-----------------AKL 985
D+ +R + L + + +++P + +D L
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
Query: 986 GAEGRKDLFDWLSKQLTG----------LSGFPDAAHLLKPASIA----------MTDKS 1025
E + L +Q F + + P M D
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294
Query: 1026 SDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSS 1085
++VR AA + E + E ++ IL IK S ++
Sbjct: 295 AEVRAAASHKVKEFCENLSADCREN-------VIMSQILPCIKEL---------VSDANQ 338
Query: 1086 KVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERM 1145
V + ++ + I + + + V+ + N+ N+
Sbjct: 339 HVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE------ 392
Query: 1146 VVRRFKFEDPRIEQIQELENDMMKYFRE-------DLHRRLLSTDFKKQVDGL--EMLQK 1196
V+ + + I EL D R L +L F ++++ L L
Sbjct: 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 452
Query: 1197 ALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAV 1256
+ +IR+ L L+ F ++ + +P++ D Y +
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHA---------TIIPKVLAMSGDPNYLHRMT-TLF 502
Query: 1257 FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVG 1316
+ L E G TK + LP +L R +
Sbjct: 503 CINVLSEVCG---------QDITTKHM---------LPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 1317 FLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLA 1356
+ I+ LT ++D +++ A L
Sbjct: 545 KIGPILDNSTLQSEV-KPILEKLTQDQDVDVKYFAQEALT 583
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 4e-08
Identities = 98/634 (15%), Positives = 206/634 (32%), Gaps = 105/634 (16%)
Query: 277 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKL 333
D D L P+ + ++ R +++ +L+ +A A G +E+ L
Sbjct: 4 DGDDSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIAL----ALGVERTRSELLPFLTDT 57
Query: 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAM 393
I D + V + + +G + LLP L ++ V + ++L+A+
Sbjct: 58 IYDEDE-VLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 114
Query: 394 HKAGCLNLVDVVEDVKTSV----KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449
+ + D+ V R+ + C S A V +
Sbjct: 115 --SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQY 168
Query: 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI-----EKLDDVRRNKLSEMIAGSG 504
+D TP VR AA S L AK + + ++ I D ++ + + +
Sbjct: 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD-EQDSVRLLAVEAC 227
Query: 505 GDVATGTSSARVQTSGGSVPSVEA---SESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561
++A ++ +P++ +S VR A +
Sbjct: 228 VNIAQLLPQEDLEAL--VMPTLRQAAEDKSWRVRYMVADKFT------------------ 267
Query: 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621
+L +A E++ ++ +L +K + R A
Sbjct: 268 --------------ELQKA----VGPEITKTDLVPAFQNL--------MKDCEAEVRAAA 301
Query: 622 ISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATK--FP 678
+++ E + + I+ +++ C+ S+ N V+ + VI L+ K
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTI 361
Query: 679 KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHKNPKV 734
+ + L L + + ++ R + + L +E +G + + ++ +D +V
Sbjct: 362 EHLLPLFLAQLKDECPEV--RLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA-KWRV 418
Query: 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
I +M GV + L C L A R A L L + G +
Sbjct: 419 RLAIIEYMPLLAGQLGVEFFD-EKLNSLC-MAWLVDHVYAIREAATSNLKKLVEKFGKE- 475
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854
++ + A P R +T + S+ ++ +
Sbjct: 476 -----WAHATIIPKVLAMSGD--------PNYLHR--MTTLFCINVLSEVCGQDITTKHM 520
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 888
PT+++ P VR +++ KI +
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 65/478 (13%), Positives = 144/478 (30%), Gaps = 101/478 (21%)
Query: 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALI 77
D L +++ ++R + L+ + LG ++ L+
Sbjct: 17 DELRNEDVQLRLNSIKKLSTIA-----------LALGV--------------ERTRSELL 51
Query: 78 AYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA-VDVFLDVMEKA 136
+L D + + + F V V L +E
Sbjct: 52 PFLTDTIYDEDEVLLALAEQLGT----------------FTTLVGGPEYVHCLLPPLESL 95
Query: 137 IKNK---VAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
+ V V ++ + S + + ++ L R S+ GL
Sbjct: 96 ATVEETVVRDKAVESLRAISHEHSPSDLEAH----FVPLVKRLAGGDWFTSRTSACGL-- 149
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISED 253
++ + ++ +K EL N+ T +R +LG+ ++
Sbjct: 150 -----------FSVCYPRVSSAVKAELRQYFRNLCS--DDTPMVRRAAASKLGE--FAKV 194
Query: 254 VGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA 313
+ + +++ P F + S R AV +A
Sbjct: 195 LEL---DNVKSEIIPM--------------------FSNLASDEQDSVRLLAVEACVNIA 231
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373
V TL++ D + V L + + + + L+P
Sbjct: 232 Q-LLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTD--LVPAFQN 288
Query: 374 KLKEKKPTVAESLTQTLQAM------HKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
+K+ + V + + ++ + + ++ +K V + V+S + +
Sbjct: 289 LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVI 348
Query: 428 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485
K ++ +P+ + L D PEVR S L + + +G+R L +S+
Sbjct: 349 MGLSPILGKDNTIE---HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 4e-07
Identities = 68/474 (14%), Positives = 150/474 (31%), Gaps = 71/474 (14%)
Query: 969 LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDV 1028
+++P++T + D E L + L T + G LL P T + + V
Sbjct: 47 RSELLPFLTDTIYDED---EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV 103
Query: 1029 RKAAEACIVEILRAGGQETIEKNL------------KDIQGPALALILERI-KLNGASQV 1075
R A + I +E + + A L +++ A +
Sbjct: 104 RDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163
Query: 1076 SMGPT-----SKSSSKVPKSASNGVSK----HGNRAISSRVIP--TKGARPESIMSVQDF 1124
+ S + V ++A++ + + + S +IP + A E SV+
Sbjct: 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD-SVRLL 222
Query: 1125 AVQSQALLNVKDSNKEDRERMV--VRRFKFEDP----RIEQIQELENDMMKYFREDLHRR 1178
AV++ + ++ ++ +R+ ED R + + K ++ +
Sbjct: 223 AVEACVNIAQLLPQEDLEALVMPTLRQA-AEDKSWRVRYMVADKFTE-LQKAVGPEITKT 280
Query: 1179 LLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL 1238
L F +++ +R + ++ + + + LP +
Sbjct: 281 DLVPAF------QNLMKDCEAEVRAAASHKVKEFCENLS-----ADCRENVIMSQILPCI 329
Query: 1239 FDTLRDEGYSLTESEAAVF----------------LPCLVEKSGHNIEKVREKMRELTKQ 1282
+ + D + + A+V LP + + +VR +
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389
Query: 1283 IVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVAS 1338
+ + LP I+E R R+ ++ + L G E K + +
Sbjct: 390 VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF-DEKLNSLCMA 448
Query: 1339 LTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREM 1392
+ IR+AA + L + G++ + +M D + R
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDP-NYLHRMT 499
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-05
Identities = 92/596 (15%), Positives = 186/596 (31%), Gaps = 105/596 (17%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKIL-----EEANKRIQPAGTGELFGGLRGRLYDSNKN 910
L+ L + D ++RL SI+ ++ I E + P L +YD ++
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPF--------LTDTIYDEDEV 64
Query: 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA---WLAAV 967
L+ LG + +G + +L + + +R+ + L A +
Sbjct: 65 LLAL-AEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 968 HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA------- 1020
L+ + L DW + + + F + A A
Sbjct: 122 DLEAHFVPLVKRLAGG-----------DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 1021 --MTDKSSDVRKAAEACIVEILRAGGQETIE--------KNLKDIQGP---ALALILERI 1067
+D + VR+AA + + E + + ++ D Q I
Sbjct: 171 NLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230
Query: 1068 KLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
A + + A+ S ++ + + A I D
Sbjct: 231 ----AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK-TDLVPA 285
Query: 1128 SQALLNVKDSNKEDRERM---------VVRRFKFEDPRIEQI----QELENDMMKYFRED 1174
Q L+ KD E R + E+ + QI +EL +D ++ +
Sbjct: 286 FQNLM--KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA 343
Query: 1175 LHRRL--LSTDFKKQV---DGLEMLQKAL----PSIRKDIIEVLDILLRWF-VLQFCKSN 1224
L + LS K L + L P +R +II LD + + Q +S
Sbjct: 344 LASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403
Query: 1225 TTCLLK------------VLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272
+++ ++E++P L L E + + ++ +
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF------DEKLNSLCMAWLVDHVYAI 457
Query: 1273 REKMRELTKQIVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG 1328
RE K++V + +P +L N R+ + + L + G +I+
Sbjct: 458 REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT 517
Query: 1329 QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDR 1384
+ L V + + +R +L IL + ++ + + D+
Sbjct: 518 K-HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS--EVKPILEKLTQDQ 570
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-11
Identities = 41/220 (18%), Positives = 90/220 (40%), Gaps = 22/220 (10%)
Query: 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLR 357
W+ K+A++ + +A T+ + + + L L+ I + E +A G +A+
Sbjct: 46 WTVVKNAISIIMVIAKTR---EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102
Query: 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVP 417
++PVL + +++ L+ + KA + + +V D + + +K
Sbjct: 103 ELVKS----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNR 158
Query: 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477
+ LN++ E S K ++P + L+DG VR +A L +A
Sbjct: 159 EDKLTALNFIEAMGENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213
Query: 478 --MRPLERSIEKLDD----VRR---NKLSEMIAGSGGDVA 508
+ + + +E+L+D V + +S ++ G +
Sbjct: 214 KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 7e-05
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 16/187 (8%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 915
L++ L+ W V +I + I + +P + L L S +
Sbjct: 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQE 89
Query: 916 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY 975
+ M + K ++ + + + L+ +A + M
Sbjct: 90 IAKAFG---QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEE-IAKANPMLMASI 145
Query: 976 V---TTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAA 1032
V + L+ E + +++ G + F L + D VR +A
Sbjct: 146 VRDFMSMLSSKN--REDKLTALNFIEAM--GENSFKYVNPFLPRIINLLHDGDEIVRASA 201
Query: 1033 EACIVEI 1039
+V +
Sbjct: 202 VEALVHL 208
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 62.8 bits (151), Expect = 1e-09
Identities = 139/1073 (12%), Positives = 306/1073 (28%), Gaps = 96/1073 (8%)
Query: 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE 384
+V + + KL+ D N V A++ +G L ++ + ++ L + K + +
Sbjct: 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQLRD 104
Query: 385 SLTQTLQAMHKA------GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----TS 434
+ L+ + G +V + + + + + +++ I +
Sbjct: 105 ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164
Query: 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-------MRPLERSIEK 487
++ H + + L VR L + S G + L + K
Sbjct: 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK 224
Query: 488 LDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547
D + + + A ++ V + +R+
Sbjct: 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284
Query: 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607
+ K + + + ++ E + + + GS
Sbjct: 285 RCPKEVYPHVSTIINICLK--YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD- 341
Query: 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEV 666
WK R A L V + E + L + E+ V+ V
Sbjct: 342 --DDDMSWKVRRAAAKCLDAVVSTRHEMLP--EFYKTVSPALISRFKEREENVKADVFHA 397
Query: 667 INYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 726
++ + + D LT V I + L+K M
Sbjct: 398 Y------------LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN--IVKALHKQM 443
Query: 727 KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAAT--RNATIKLLG 784
K+ K+ K + V + + ++ L ++++ + + L
Sbjct: 444 KE-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502
Query: 785 ALHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDA- 561
Query: 844 GLPREDISGKFTPTLVKSLESPD--WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
+K L++ D +V+ +I + +I+ +
Sbjct: 562 ----TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD-LPNTLQIFL 616
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
RL + L +TL A S + + + + L N++ ++ TL+ LD
Sbjct: 617 ERLKNEITRLTTVKALTLIA-GSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021
+ L A + D L ++ H+ + A +
Sbjct: 676 ILIKNYS--------------DSLTAAMIDAVLDELPPLIS-----ESDMHVSQMAISFL 716
Query: 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1081
T + + IL L+ A+ + + + G + +
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776
Query: 1082 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1141
+ + S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTD 832
Query: 1142 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSI 1201
R++ E + E+ A ++
Sbjct: 833 SIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS------------PSEEVKSAASYAL 880
Query: 1202 RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1261
+ L L + + + L L L + + + L
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYL----LLHSLKEIISSASVVGLKPYVENIWALL 936
Query: 1262 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1321
++ E R + E ++ T LP + L S ++ R V V F I
Sbjct: 937 LKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAVKFTISD 995
Query: 1322 HGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
H I LK+ + + D +R+ AL T + I + +
Sbjct: 996 HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1048
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 49.7 bits (117), Expect = 1e-05
Identities = 59/523 (11%), Positives = 151/523 (28%), Gaps = 65/523 (12%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK---------TVADSN 65
P + +K+ +EA + L I + P K AD +
Sbjct: 523 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 582
Query: 66 APVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCL--TGRPKTVEKAQAVFMLWVEL 123
V+++A+ + + + G + R TV+ + +++
Sbjct: 583 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI 642
Query: 124 EAVDVFLDVME---KAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--KRILKMLPELFD 178
+ V + + ++ + + + + + + +L LP L
Sbjct: 643 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLIS 702
Query: 179 HQDQNVRASSKGLTLELCRWIGK------DPVKTILFEKMRDTMKKELEVELVNVSGTAR 232
D +V + L + + L +R + + + + A
Sbjct: 703 ESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQAL 762
Query: 233 PTRKIRAEQDKELGQELISEDVGPGPS---EESTADVPPEIDEYELVDPVDILTPLEKSG 289
+L + L + ++S + + P + + +
Sbjct: 763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ-- 820
Query: 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349
F + VK ++ ++ +A L+ I E+ + + + + V A A+
Sbjct: 821 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 880
Query: 350 GNLARG----------------------------------LRTHFSGSSRFLLPVLLEKL 375
G+++ G + +LL+
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 940
Query: 376 KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435
+ + + + L + ++ ++ +K + + RS + V F I
Sbjct: 941 ECAEEGTRNVVAECLGKL---TLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP 997
Query: 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
+ + + K+ + ++ L D VR A + A +
Sbjct: 998 QP-IDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS 1039
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 47.0 bits (110), Expect = 7e-05
Identities = 92/709 (12%), Positives = 228/709 (32%), Gaps = 79/709 (11%)
Query: 23 KNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKA 82
+WKVR A L A+ + + + + P + V+ A ++ LK
Sbjct: 345 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404
Query: 83 ADADAGRYAKEVCDAIAAKCLTG----------------RPKTVEKAQAVFMLWVELEAV 126
LT + K+V+ Q F + EL V
Sbjct: 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464
Query: 127 ---------DVFLDVMEKAIKNKVAKAVV--PAIDVMFQALSEFGAKIIPP--KRILKML 173
V + + ++ +K + + + A+ ++ L ++ P + ++ +
Sbjct: 465 LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV 524
Query: 174 PELFDHQDQNVRASSKGLTLELCRWIG----------KDPVKTILFEKM----RDTMKKE 219
+ + + +T +L + I +K + + + +E
Sbjct: 525 VACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQE 584
Query: 220 LEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279
++ ++ G D ++ E + + +T I L +
Sbjct: 585 VKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDL 644
Query: 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDV 337
+ ++ + + + ++ L L + V L LI++
Sbjct: 645 RPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISES 704
Query: 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK--KPTVAESLTQTLQAMHK 395
++ V+ AI + LA+ + S S +L L+ ++ + ++ QA+
Sbjct: 705 DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764
Query: 396 AG--CLNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452
G L +D++ + V + L + + C+ ++A + +
Sbjct: 765 TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQD 824
Query: 453 CLNDGTPE-VRDAAFSVLAAIAKSVGMRP---LERSIEKLDDVRRNKLSEMIAGSGGDVA 508
N + + +R A L + + + L+ I + ++ + + G ++
Sbjct: 825 VKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSIS 884
Query: 509 TGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDG 568
G +P V +S ++ + S K +S+A V+
Sbjct: 885 VGNLPEY-------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENI----- 932
Query: 569 SGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQL----KSAVWKERLEAIS 623
+ L + E E ++ E +L + P + +L S R ++
Sbjct: 933 -----WALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVT 987
Query: 624 SLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 671
+++ + + Q +D ++ + L + ++ V++ + N A
Sbjct: 988 AVKFTISDHPQPIDPLLKNC--IGDFLKTLEDPDLNVRRVALVTFNSAA 1034
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 1e-09
Identities = 88/726 (12%), Positives = 208/726 (28%), Gaps = 111/726 (15%)
Query: 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-GLRTHFSGSSRFLLPVLLEK 374
+ G + I D + + I +A G ++ LLP L
Sbjct: 81 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD----LLPKLCSL 136
Query: 375 LKEKKP-----------TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLT 423
L + + E + L + LN++ + K+ P +RS
Sbjct: 137 LDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM--IPKFLQFFKHSSPKIRSHA 194
Query: 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--MRP- 480
+ V I + ++A ++ ++ D PEVR L + + + P
Sbjct: 195 VACVNQFIISRTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 481 --------LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532
L+R+ ++ ++V + +E
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEFWLT--------------------------LAEQP 287
Query: 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS-- 590
+ L PV + + + D S+ +
Sbjct: 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIIL---------LKGDVEGGSGGDDTISDWNLR 338
Query: 591 ------LEEIESRLGSLIPADTVGQLK----SAVWKERLEAISSLRQQVEA-----VQNL 635
L+ + + + + LK W + I L E + L
Sbjct: 339 KCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 398
Query: 636 DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT-ATKFPKKCVVLCLLGISERVA 694
+ + L++ + S+K V+ ++ A ++ P + + + +R+
Sbjct: 399 PELIPHLIQCL------SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 452
Query: 695 D--IKTRAHAMKCLTTFSEAVGPGF------IFERLYKIMK--DHKNPKVLSEGILWMVS 744
D + + A T E I + L HKN +L + I +
Sbjct: 453 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512
Query: 745 AVEDFGVSHLKLKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803
+V ++ L+ + ++ L ++ + + V
Sbjct: 513 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 572
Query: 804 ALLSAL------DAEYEKNPFEGTVVPKKTVRASEST-SSVSSGGSDGLPREDISGKFTP 856
++ + P + K + + S ++ G + +
Sbjct: 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 632
Query: 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916
+ + ++ +VR S + + + + ++P + L L ++
Sbjct: 633 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNAT 691
Query: 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH--MRECTLTVLDAWLAAVHLDKMVP 974
+G ++ MG ++ VL +++ + + E T + L V ++ P
Sbjct: 692 WAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI-GRLGYVCPQEVAP 750
Query: 975 YVTTAL 980
+ +
Sbjct: 751 MLQQFI 756
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 8e-06
Identities = 56/436 (12%), Positives = 122/436 (27%), Gaps = 48/436 (11%)
Query: 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 636
L + ED S + ++ L +IP + K + K R A++ + Q + +
Sbjct: 152 LQKICEDSAEILDS-DVLDRPLNIMIPK-FLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209
Query: 637 QSV--EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK----KCVVLCLLGIS 690
+ L + ++ +V++ V + L V L
Sbjct: 210 MLHIDSFIENLFALA---GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ 266
Query: 691 ERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750
+ D A + T +E + + K + PK++ + M + D
Sbjct: 267 D--QDENVALEACEFWLTLAE--------QPICKDVLVRHLPKLIPVLVNGMKYSDID-- 314
Query: 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALD 810
+ LK D + R + L L ++ + + LL +
Sbjct: 315 IILLKGDVEGGSGGDDTISDWN--LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 372
Query: 811 AEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 870
+++ G G+ + P L++ L VR
Sbjct: 373 -------------WVVKESGILVLGAIAEGCMQGM--IPYLPELIPHLIQCLSDKKALVR 417
Query: 871 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930
+ +++ + L L R+ DSNK + A + +
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL 477
Query: 931 EKSSKGVLSDILKCLGDNKKHMRECTLTVL--------DAWLAAVHLDKMVPYVTTALTD 982
+L ++ + + ++ ++P +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 983 AKLGAEGRKDLFDWLS 998
K + L + LS
Sbjct: 538 LKDEDKDLFPLLECLS 553
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 8e-08
Identities = 48/423 (11%), Positives = 132/423 (31%), Gaps = 42/423 (9%)
Query: 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNL-------DQSVEILV 643
++ R + + + Q+K+ + + + + + E++
Sbjct: 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMK 137
Query: 644 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF-------PKKCVVLCLLGISERVADI 696
+V +E+ V++ + + Y+ +A ++ + G
Sbjct: 138 IMVDNTG--AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK 195
Query: 697 KTRAHAMKCLTTFSEAVGPGFIFERLYKIM-------KDHKNPKVLSEGILWMVSAVEDF 749
R A+ L + E + ++ +V + + + +
Sbjct: 196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255
Query: 750 GVSHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807
+ +K ++ + ++S + T++ + + DI LA + L
Sbjct: 256 -YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE-IDIAYELAQFPQSPLQ 313
Query: 808 ALDAEYEKNPFEGTVVPKKTVRASE----STSSVSSGGSDGL------PREDISGKFTPT 857
+ + + R +E +VS L I
Sbjct: 314 SYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEF 373
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917
+ +++ + +W+ R ++ A I++ +K + + + + D + + T
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAW 433
Query: 918 TLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRE--CTLTVLDAWLAAVHLDKMV 973
+G +A ++ +++ GV+ L L D+ K T+ L LA +
Sbjct: 434 CIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIY 493
Query: 974 PYV 976
+
Sbjct: 494 NFY 496
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 6e-05
Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 21/206 (10%)
Query: 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353
+ R + +E+ + I L K I D A A
Sbjct: 23 LSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQ 82
Query: 354 RGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413
L L+P + K + ++TL ++ +N ++K
Sbjct: 83 SNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISI--VNAVNP--------VAIK 132
Query: 414 NKVP-LVRSL--TLNWVTFC--------IETSSKAAVLKVHKDYVPICMECLNDGTPEVR 462
+P L ++ T W + ++K V + +P+ E + D EV+
Sbjct: 133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVK 192
Query: 463 DAAFSVLAAIAKSVGMRPLERSIEKL 488
AA + + ++V + +ER I L
Sbjct: 193 AAATAAMTKATETVDNKDIERFIPSL 218
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 8e-04
Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 24/270 (8%)
Query: 683 VLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 742
++ ++ + + D + R A++ L I Y+ M+ + P + I
Sbjct: 218 IMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPAL--FAITIE 266
Query: 743 VSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802
+ V+ ++ + C + + A+ + KF +L +
Sbjct: 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326
Query: 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 862
L+ D + + + +A+ + + +DI P + + +
Sbjct: 327 TQTLTKQDENDDDDDWN-------PCKAAGVCLMLLAT----CCEDDIVPHVLPFIKEHI 375
Query: 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV 922
++PDW+ R ++ A ILE + L + D + + T+G +
Sbjct: 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
Query: 923 ASAMGPAVEKSS--KGVLSDILKCLGDNKK 950
+ A +L +++ L +
Sbjct: 436 CELLPEAAINDVYLAPLLQCLIEGLSAEPR 465
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2013 | |||
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 100.0 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 100.0 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 100.0 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.97 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.96 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.96 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.95 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.93 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.93 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.93 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.93 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.92 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.92 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.9 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.9 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.9 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 99.89 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 99.88 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.45 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.41 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.26 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.23 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.17 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.16 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.11 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.11 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.1 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.08 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.05 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.04 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.04 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.01 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.99 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.98 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.97 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.97 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.86 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.86 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.77 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.75 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.7 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 98.69 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.65 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 98.65 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.61 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.61 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.56 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.54 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.49 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.48 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.48 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.46 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.44 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.42 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.4 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.4 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.4 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.39 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.38 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 98.18 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.08 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.07 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.0 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.96 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.94 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.85 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 97.84 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.84 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 97.83 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 97.8 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.49 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.45 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.32 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.04 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 96.89 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 96.88 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 96.88 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.86 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.79 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 96.75 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 96.51 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 96.41 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.29 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 96.21 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 96.13 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 96.0 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 95.94 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 95.77 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.64 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 95.54 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 94.96 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 94.87 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 94.5 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.29 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 94.28 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 94.19 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 93.92 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 93.83 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 93.83 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 93.72 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 93.65 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 93.6 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 93.52 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 93.21 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 92.96 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 92.9 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 92.9 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 92.68 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 91.25 | |
| 1elk_A | 157 | Target of MYB1; superhelix of helices, endocytosis | 90.98 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 90.53 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 90.44 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 88.95 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 88.9 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 88.23 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 88.11 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 87.97 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 87.75 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 87.64 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 86.25 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 85.62 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 84.03 | |
| 3rru_A | 152 | TOM1L1 protein; structural genomics, PSI-biology, | 81.88 | |
| 1dvp_A | 220 | HRS, hepatocyte growth factor-regulated tyrosine k | 81.05 |
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-56 Score=513.12 Aligned_cols=256 Identities=28% Similarity=0.572 Sum_probs=247.0
Q ss_pred hhcccCCCChHHHhh----hhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcccChhhH
Q 000159 1130 ALLNVKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDI 1205 (2013)
Q Consensus 1130 ~~~~~~~~~k~~R~~----~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~ 1205 (2013)
|++. .+++|++|++ +++++|+|++||+|++++|++||.++++++++.+|||+||++|++|+++|++.++++++++
T Consensus 3 ~~l~-~~~~K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~ 81 (266)
T 2of3_A 3 LLLS-DNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSL 81 (266)
T ss_dssp CSBC-CSSHHHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred Ccee-cCccHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHH
Confidence 4443 3788999984 5578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhh
Q 000159 1206 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVN 1285 (2013)
Q Consensus 1206 i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~ 1285 (2013)
++++|++|||+++||+|+|++|++++||+|..+|..|.+.+|+|+++|+.+|||+|++|+||+||.||+.++++++.++.
T Consensus 82 ~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~ 161 (266)
T 2of3_A 82 LSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD 161 (266)
T ss_dssp HHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchH---HHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000159 1286 FYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKIL 1362 (2013)
Q Consensus 1286 v~p~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l---~~ia~~i~drd~~VR~AAl~~l~~~y~~~ 1362 (2013)
+||++++|+|+++|++|||+|+|+||+++|+++|++||+. +.|++ +.|+++++|+|++||+||+||++++|.++
T Consensus 162 v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 162 VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999996 67888 99999999999999999999999999999
Q ss_pred ChHHHHHhhcCCHHHHHhHHHHHHhhh
Q 000159 1363 GEDIWRYVGKLTDAQKSMLDDRFKWKV 1389 (2013)
Q Consensus 1363 G~~v~~~vg~Ls~~~~s~l~er~kr~~ 1389 (2013)
||.||+++|+|++++++||+|||||++
T Consensus 239 Gd~v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 239 GDQMWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp TTHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhcCCHHHHHHHHHHHhhcc
Confidence 999999999999999999999999974
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=330.39 Aligned_cols=231 Identities=24% Similarity=0.435 Sum_probs=219.6
Q ss_pred CCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHH-Hh-cCCCCC--CCChHHHHHHHHHHh-cccCHHHHHH
Q 000159 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK-LA-STKRIA--PGDFTEVCRTLKKLI-TDVNIAVAVE 344 (2013)
Q Consensus 270 iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~-l~-~~pki~--~~~~~~l~~~L~k~l-~D~N~~V~~~ 344 (2013)
.|+||++|||||++|+| ++|++.+.++||++|++|++.|.. ++ +++++. .++|.++++.|++.+ +|+|+.|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~-~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLP-KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CchHhhcChhhhhhhCC-hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHH
Confidence 47899999999999999 699999999999999999999999 87 678888 689999999999999 6999999999
Q ss_pred HHHHHHHHHHHhh-hcch-hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC------CChHhHHHHHHHHhhcCC
Q 000159 345 AIQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC------LNLVDVVEDVKTSVKNKV 416 (2013)
Q Consensus 345 A~~~l~~La~~L~-~~f~-~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~------~~l~~il~~l~~~l~~Kn 416 (2013)
|++||+.|+++++ +.|. +|+..++|.++++++|+|+.|++++..|+++++.+ + ..++.+++.|..+++|||
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~ 159 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKT 159 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999 99999999999999999999999999999999998 4 238999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCh--hHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHH
Q 000159 417 PLVRSLTLNWVTFCIETSSK--AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (2013)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~--~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~ 493 (2013)
|++|.+++.||.+++..++. ..+.+++ +.++|.+.++++|++++||++|.+|++++++++|++.+.+|++.||+.++
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKR 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHH
Confidence 99999999999999998875 5677889 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000159 494 NKLSEMIAG 502 (2013)
Q Consensus 494 kki~e~~~~ 502 (2013)
++|++++++
T Consensus 240 ~ki~~~~~~ 248 (249)
T 2qk1_A 240 KKIEETVKT 248 (249)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999875
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=340.73 Aligned_cols=232 Identities=25% Similarity=0.388 Sum_probs=183.4
Q ss_pred CChHHhhhhhhcCCChhhhccCCChHHHHHHHHHHHHHhhccCCC--Cc---hHHHhhhhhhHhhhcCCcHHHHHHHHHH
Q 000159 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDP--KD---NRIRELGPLFKKTVADSNAPVQDKALDA 75 (2013)
Q Consensus 1 m~~~~~~~~~~~~lpl~erl~~k~WK~R~~ayeeL~~~~~~~~d~--~~---~~~~~~~~~~~k~v~DsN~~vqe~~lea 75 (2013)
|++|++ .||++|||+|||.||+||.|++||++|.+.|...... .+ ..|..+.+++++++.|+|+.||++|+++
T Consensus 1 m~~~e~--~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~ 78 (278)
T 4ffb_C 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVA 78 (278)
T ss_dssp ------------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcch--hhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 777553 4999999999999999999999999999999865332 12 2366778899999999999999999999
Q ss_pred HHHHHHHhchhh------hhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh-hhhHHHHHHHHhhcCChhhHHH
Q 000159 76 LIAYLKAADADA------GRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA-VDVFLDVMEKAIKNKVAKAVVP 147 (2013)
Q Consensus 76 l~~~v~~~~~~~------~~~~~~v~~~LveK~l~-~k~~~k~~A~~~ll~~~E~~~-~~~v~~~L~~~~~~KnpKv~~~ 147 (2013)
+..|++..+... ..++..+++.|++||++ +|+++|+.|.++++.++|... .+.+++.|..++.|||||++.+
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~ 158 (278)
T 4ffb_C 79 LNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAA 158 (278)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHH
T ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHH
Confidence 999998865432 23467899999999988 799999999999999999865 4778899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcChhH----HHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCch--hhHHHhhhChHHHHHHHH
Q 000159 148 AIDVMFQALSEFGAKIIPPKR----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP--VKTILFEKMRDTMKKELE 221 (2013)
Q Consensus 148 ~l~~L~~~l~~fG~~~i~~k~----il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~--l~~~l~~~Lk~~q~keLe 221 (2013)
|+.||.+++.+||.+++++++ +++.++++|+|+|++||++|+.+++++|+|+|+.. +...++++|||+|+++|+
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le 238 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHH
Confidence 999999999999999998765 66788899999999999999999999999999742 223445899999999999
Q ss_pred HHHHhcCCCCCCC
Q 000159 222 VELVNVSGTARPT 234 (2013)
Q Consensus 222 ~~f~k~~~~~~P~ 234 (2013)
++|+++.+.++|+
T Consensus 239 ~~f~k~~~~~~~~ 251 (278)
T 4ffb_C 239 KLFAKVGDEPSSS 251 (278)
T ss_dssp HHHSCCCC-----
T ss_pred HHHHhcCCCCCCC
Confidence 9999998765444
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-24 Score=312.61 Aligned_cols=1022 Identities=14% Similarity=0.135 Sum_probs=654.8
Q ss_pred ChhhhccCCChHHHHHHHHHHHHHhhccCCCCch-HHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHH
Q 000159 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDN-RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (2013)
Q Consensus 15 pl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~-~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~ 93 (2013)
.+-+++.+.+...|.+|.++|.+.++...-..++ ....+...+.+++.|.|..++..|+.++..+++..+. .+...
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~ 86 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 86 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 3678899999999999999999988643111122 2445566677788999999999999999998877654 45667
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh------------hhhHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhC
Q 000159 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA------------VDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFG 160 (2013)
Q Consensus 94 v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~------------~~~v~~~L~~~~~-~KnpKv~~~~l~~L~~~l~~fG 160 (2013)
+++.|++......+.+|..|..++-.+++.-. ...++..|..++. +.++.++.+++.+|.+++..+|
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 88888876444678899999888887776522 3466777778887 6899999999999999999999
Q ss_pred CCCcC-hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchh
Q 000159 161 AKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRA 239 (2013)
Q Consensus 161 ~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs 239 (2013)
....+ ...+++.+.+.|.|.+..||..|...+..+....++..+ ..+-+..++-|.. -.. .. .|.
T Consensus 167 ~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~-----~~~l~~l~~~L~~----~~~--~~---~r~ 232 (1230)
T 1u6g_C 167 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF-----VDLIEHLLSELSK----NDS--MS---TTR 232 (1230)
T ss_dssp SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----C-----TTHHHHHHHHHHH----TCS--SC---SCT
T ss_pred hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHhcc----CCc--hh---HHH
Confidence 86544 467999999999999999999999999999988876422 2211222222211 111 11 121
Q ss_pred hhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcC-CCC
Q 000159 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRI 318 (2013)
Q Consensus 240 ~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-pki 318 (2013)
..-.... . -....| ..+.+| .+ +| - +.+...+.+.++..|..++..+..++.. +.-
T Consensus 233 ~a~~~l~-~-l~~~~~------------~~~~~~--l~--~l----~-~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 233 TYIQCIA-A-ISRQAG------------HRIGEY--LE--KI----I-PLVVKFCNVDDDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp THHHHHH-H-HHHHSS------------GGGTTS--CT--TH----H-HHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHH-H-HHHHhH------------HHHHHH--HH--HH----H-HHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH
Confidence 1110000 0 000000 012222 11 12 1 3456666778888899999888887742 211
Q ss_pred CCCChHHHHHHHHHHhc-------------------------------------ccCHHHHHHHHHHHHHHHHHhhhcch
Q 000159 319 APGDFTEVCRTLKKLIT-------------------------------------DVNIAVAVEAIQAIGNLARGLRTHFS 361 (2013)
Q Consensus 319 ~~~~~~~l~~~L~k~l~-------------------------------------D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (2013)
....+..+++.+.+.+. |..-.|+..|+.+++.++...+..|.
T Consensus 290 ~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~ 369 (1230)
T 1u6g_C 290 VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369 (1230)
T ss_dssp CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH
Confidence 11112344554444332 22335788999999999997776799
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC-----------------------ChHhHHHHHHHHhhcCChH
Q 000159 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL-----------------------NLVDVVEDVKTSVKNKVPL 418 (2013)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~-----------------------~l~~il~~l~~~l~~Knp~ 418 (2013)
+|...++|.++..++|....||.++..++..++..... .++.+++.+...+++.+|.
T Consensus 370 ~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~ 449 (1230)
T 1u6g_C 370 EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVK 449 (1230)
T ss_dssp HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHH
Confidence 99999999999999999999999999999888864100 1234455555568999999
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHH
Q 000159 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (2013)
Q Consensus 419 vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~--~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki 496 (2013)
+|..++..|..++...+ ..+..++..++|.+...+.|.++ +||..+..+++.+....|.+.+.++++.+-
T Consensus 450 vr~~~~~~L~~l~~~~~-~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~ll------- 521 (1230)
T 1u6g_C 450 TRQCCFNMLTELVNVLP-GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALV------- 521 (1230)
T ss_dssp HHHHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTH-------
T ss_pred HHHHHHHHHHHHHHHch-hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHH-------
Confidence 99999999999888754 33456789999999999999975 899998888887776655443443332221
Q ss_pred HHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCc
Q 000159 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK 576 (2013)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~ 576 (2013)
T Consensus 522 -------------------------------------------------------------------------------- 521 (1230)
T 1u6g_C 522 -------------------------------------------------------------------------------- 521 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccC--------cchHHHHHHHHHhc
Q 000159 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--------LDQSVEILVRLVCM 648 (2013)
Q Consensus 577 ~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~--------~~~~~~~lv~~L~~ 648 (2013)
+.++..+.+.+|+.|.+++..+..+++..++ ..++.+.++..+..
T Consensus 522 ---------------------------p~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 574 (1230)
T 1u6g_C 522 ---------------------------PPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK 574 (1230)
T ss_dssp ---------------------------HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH
Confidence 2344556677888888888888877766332 23344444443321
Q ss_pred CCCC--cccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhh---Chh----HHH
Q 000159 649 LPGW--SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV---GPG----FIF 719 (2013)
Q Consensus 649 ~pgl--~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~---~~~----~Vl 719 (2013)
.+ .|.+..|.+.++.++..++...+......+..+++.|.+.+.+...|..+..++..++... ..+ .++
T Consensus 575 --~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~ 652 (1230)
T 1u6g_C 575 --RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGV 652 (1230)
T ss_dssp --HHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHH
T ss_pred --HHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHH
Confidence 13 5778889999999999999886643344678888988888887667777777777776532 223 344
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHH---HhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHh
Q 000159 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC---KDTGLQSSAAATRNATIKLLGALHKFVGPDIKG 796 (2013)
Q Consensus 720 ~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l---~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~ 796 (2013)
+.+...+ ...++.+|..++.++..++..+|. .++...+.+.+ ..+ +.+.|..++..+..++..|+...++.+..
T Consensus 653 ~~L~~~l-~~~~~~~r~~a~~al~~l~~~~~~-~~~~~~v~~~l~~ll~l-l~~~D~~~~~~~~~~L~~l~~~~~~~~~~ 729 (1230)
T 1u6g_C 653 PILASFL-RKNQRALKLGTLSALDILIKNYSD-SLTAAMIDAVLDELPPL-ISESDMHVSQMAISFLTTLAKVYPSSLSK 729 (1230)
T ss_dssp HHHHHHT-TSCCHHHHHHHHHHHHHHHHHCCT-TCCHHHHHHHHTTCGGG-SCTTCHHHHHHHHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHhcccc-cCCHHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHHHHhCchhHHH
Confidence 4444443 567899999999999999998874 34444444444 344 67888999999999999999887766655
Q ss_pred hhhhccHHHHHHHHH-------------HHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcC
Q 000159 797 FLADVKPALLSALDA-------------EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 863 (2013)
Q Consensus 797 ~L~~lkp~ll~~Le~-------------ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~ 863 (2013)
++..+-|.++..+.. -|..+...++ +. .....+.+.++..+.
T Consensus 730 ~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~------------------------~~-~~~~~ll~~l~~~~~ 784 (1230)
T 1u6g_C 730 ISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT------------------------NN-LGYMDLLRMLTGPVY 784 (1230)
T ss_dssp TTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCC------------------------TT-CSHHHHHHHHSTTTT
T ss_pred hHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCC------------------------CC-CCHHHHHHHHhcccc
Confidence 555555544443321 1111111000 00 001111122222211
Q ss_pred ---C--CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 864 ---S--PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 864 ---d--~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
+ ..|+.|..+.+.+..++.... +.. ++++..|...+.+ .+..++..++.+++.++...+ +.. ...
T Consensus 785 ~~~~~~~~~~~~~~~a~~i~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~--~~~-~~~ 856 (1230)
T 1u6g_C 785 SQSTALTHKQSYYSIAKCVAALTRACP----KEG-PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID--LSG-QLE 856 (1230)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHSC----CCS-HHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSC--CCS-CTH
T ss_pred CCCCccccchhhHHHHHHHHHHHHhcc----hhh-HHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCC--Ccc-ccc
Confidence 1 367778888888887776321 111 3444444445543 345566677778888765432 222 245
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC---CChhhh
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHL 1013 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~---~~~~~l 1013 (2013)
+.+.++..|.|....||.+|..+|+.++. .+++.++|.+...+.+. +..|...+.-|.+.+...+.. +....+
T Consensus 857 l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~-~~~~~~lp~ll~~l~~~---~~~~~~~l~al~e~i~~~~~~~~~~~~~~i 932 (1230)
T 1u6g_C 857 LKSVILEAFSSPSEEVKSAASYALGSISV-GNLPEYLPFVLQEITSQ---PKRQYLLLHSLKEIISSASVVGLKPYVENI 932 (1230)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHSSCSTTTHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHhHHHhc-cCHHHHHHHHHHHHhcc---chhhHHHHHHHHHHHhcCChhhHHhhHHHH
Confidence 78999999999999999999999999874 35678899999999754 567888888888888754322 122445
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhcc-CChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCC
Q 000159 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD-IQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSAS 1092 (2013)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~-L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~ 1092 (2013)
...++..+.|.+..+|..+.+|++.+....+.. +.+.+.+ |+
T Consensus 933 ~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~-l~p~l~~~l~------------------------------------ 975 (1230)
T 1u6g_C 933 WALLLKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLI------------------------------------ 975 (1230)
T ss_dssp HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGG-THHHHTTTSS------------------------------------
T ss_pred HHHHHHHhcCcchhhHHHHHHHHhhhhccChHH-HHHHHHHHhc------------------------------------
Confidence 555777888888899999999999987775422 2222210 00
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhh
Q 000159 1093 NGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR 1172 (2013)
Q Consensus 1093 ~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~ 1172 (2013)
T Consensus 976 -------------------------------------------------------------------------------- 975 (1230)
T 1u6g_C 976 -------------------------------------------------------------------------------- 975 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHH
Q 000159 1173 EDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252 (2013)
Q Consensus 1173 ~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~ 1252 (2013)
+.+...|..++..+..++...+..+...++-++.-+...+.|++..|-..++..|..+..... .+-..
T Consensus 976 --------~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~----~~~~~ 1043 (1230)
T 1u6g_C 976 --------SGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP----SLIRD 1043 (1230)
T ss_dssp --------SSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCG----GGTGG
T ss_pred --------CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCh----HhHHH
Confidence 000000111111111112221111112232222333334688888888888888887654322 22223
Q ss_pred HHHhhhhHHHHhhcCChH------------------HHHHHHHHHHHHHhhccC----ccccHHHHHhhhcCCChhhHHH
Q 000159 1253 EAAVFLPCLVEKSGHNIE------------------KVREKMRELTKQIVNFYS----ATKTLPYILEGLRSKNNRTRIE 1310 (2013)
Q Consensus 1253 Ea~~~lP~L~~K~Gd~k~------------------~vr~~v~~il~~i~~v~p----~skvf~~l~~gl~sKN~r~R~e 1310 (2013)
....++|.|+..+-...+ .+|+..-+.+-.+...+. ...+|+.++.|++-- -..|.-
T Consensus 1044 ~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d~-~di~~~ 1122 (1230)
T 1u6g_C 1044 LLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDH-YDIKML 1122 (1230)
T ss_dssp GHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSSC-HHHHHH
T ss_pred HHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccCch-HHHHHH
Confidence 467799999877643333 577766666655555442 346777777888663 678888
Q ss_pred HHHHHHHHHHhhCCCcccc-cchHHHHHHhhc------------CCChHHHHHHHHHHHHHHHHhC
Q 000159 1311 CVDLVGFLIDHHGAEISGQ-LKSLQIVASLTA------------ERDGEIRKAALNTLATGYKILG 1363 (2013)
Q Consensus 1311 cl~~l~~li~~~g~~~~~~-~k~l~~ia~~i~------------drd~~VR~AAl~~l~~~y~~~G 1363 (2013)
|...|..++......+... .+.+..+++.++ +|..+...+||.|+..+..+.|
T Consensus 1123 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~~~ 1188 (1230)
T 1u6g_C 1123 TFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPE 1188 (1230)
T ss_dssp HHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999888876655322 222333333222 2334555566666665544433
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-25 Score=316.00 Aligned_cols=968 Identities=15% Similarity=0.132 Sum_probs=595.5
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-------hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcCh
Q 000159 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-------AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP 166 (2013)
Q Consensus 94 v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~-------~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~ 166 (2013)
-++.|++|..+..+.+|..|.+-+..++... ....++..|+.++.+++|+++.+++.+|..+....+.. .+
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~ 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH
Confidence 3667888866678899999987777665432 13477888899999999999999999999887644331 24
Q ss_pred hHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhh
Q 000159 167 KRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELG 246 (2013)
Q Consensus 167 k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~ 246 (2013)
..+++.+...+.+.+..||..|...+..+...+|+.. . ..........
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~---~-~~~~~~~~~~---------------------------- 132 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS---S-GSALAANVCK---------------------------- 132 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---------CCTHHHHHH----------------------------
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc---c-ccchHHHHHH----------------------------
Confidence 5688899999999999999999999999888887530 0 0000000000
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhc-cCCHHHHHHHHHHHHHHhc-CCCCCCCChH
Q 000159 247 QELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK-ATKWSERKDAVAELTKLAS-TKRIAPGDFT 324 (2013)
Q Consensus 247 ~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~-s~kWkeR~eaL~~L~~l~~-~pki~~~~~~ 324 (2013)
++ + +.+.+.+. +.+|..|..|++.|..++. .++.....+.
T Consensus 133 ---------------------------------~l---l--p~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~ 174 (1230)
T 1u6g_C 133 ---------------------------------KI---T--GRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP 174 (1230)
T ss_dssp ---------------------------------HH---H--HHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHH
T ss_pred ---------------------------------HH---H--HHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 11 1 23444555 4788999999999988874 3333333567
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHh-c---CC
Q 000159 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKA-G---CL 399 (2013)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~ai~~~-~---~~ 399 (2013)
.++..|...+.|.+..|+..|+.+|+.++..++..| ...+++.++..+.+.. ..+|..+..++..++.. + ..
T Consensus 175 ~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 251 (1230)
T 1u6g_C 175 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 251 (1230)
T ss_dssp HHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH
Confidence 899999999999999999999999999998877665 3456777777765543 35667778888888775 1 13
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHhCc
Q 000159 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSV-LAAIAKSVGM 478 (2013)
Q Consensus 400 ~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~a-l~~l~~~~Ge 478 (2013)
.+..+++.+...+++.++.+|..++.++..+...++.. +.++++.++|.+.+.+.+ +++........ ...+....++
T Consensus 252 ~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~l~~li~~ll~~l~~-d~~~~~~~d~~~~~~~~~~~~~ 329 (1230)
T 1u6g_C 252 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VYPHVSTIINICLKYLTY-DPNYNYDDEDEDENAMDADGGD 329 (1230)
T ss_dssp SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHHHHHHHHHHHTTCCCC-C---------------------
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-HHHhHHHHHHHHHHHhCC-CCCCCCcccccccccccccccc
Confidence 35788999999999999999999999999888766543 456778899999888853 22221000000 0000000011
Q ss_pred hhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccccccc---CCCCCCCCCCCCC
Q 000159 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASML---SGKRPVSAAPASK 555 (2013)
Q Consensus 479 ~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~---~~~~P~~~~~~~~ 555 (2013)
..... .++ ++.... . .. ..++..+.... ....
T Consensus 330 ~~~~~----~~~-------~~~~~~--d---~~--------------------~~vR~~A~~~l~~l~~~~--------- 364 (1230)
T 1u6g_C 330 DDDQG----SDD-------EYSDDD--D---MS--------------------WKVRRAAAKCLDAVVSTR--------- 364 (1230)
T ss_dssp -------------------------------CT--------------------THHHHHHHHHHHHHHTTC---------
T ss_pred cchhh----ccc-------cccccc--c---cC--------------------HHHHHHHHHHHHHHHHhc---------
Confidence 00000 000 000000 0 00 00000000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc
Q 000159 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL 635 (2013)
Q Consensus 556 k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~ 635 (2013)
+ +.+...+..+ .+.++..+.+.+...|.++++.+...+......
T Consensus 365 ------------------------------~-----~~~~~~~~~l-~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 408 (1230)
T 1u6g_C 365 ------------------------------H-----EMLPEFYKTV-SPALISRFKEREENVKADVFHAYLSLLKQTRPV 408 (1230)
T ss_dssp ------------------------------C-----TTHHHHHTTT-HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC
T ss_pred ------------------------------h-----hHHHHHHHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccc
Confidence 0 0011111122 244667777888888888888888777653210
Q ss_pred --------------------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC
Q 000159 636 --------------------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD 695 (2013)
Q Consensus 636 --------------------~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD 695 (2013)
....+.++..+.. .++|.+..+...++.++..++..++.....++..+++.+++.+.|
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~--~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d 486 (1230)
T 1u6g_C 409 QSWLCDPDAMEQGETPLTMLQSQVPNIVKALHK--QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLND 486 (1230)
T ss_dssp ------------CCCHHHHHHHHTTHHHHHHHH--HTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTC
T ss_pred cccccCccccccccchHHHHHHHhhHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcC
Confidence 1112233443322 367888899999999999999887665556788999999999988
Q ss_pred h----hhhHHHHHHHHHHHhhhChhH-------HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC------CCCC--h
Q 000159 696 I----KTRAHAMKCLTTFSEAVGPGF-------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV------SHLK--L 756 (2013)
Q Consensus 696 ~----K~r~~a~e~L~~l~e~~~~~~-------Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~------~~l~--~ 756 (2013)
. .++..+...+..+++..+++. +++.++..+ .+++++++.+++..+..+++.+|. ..+. +
T Consensus 487 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l-~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 565 (1230)
T 1u6g_C 487 KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV-GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI 565 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence 5 457777777777777666552 345555543 678999999999999999998886 1221 3
Q ss_pred hhHHHHHHhcCC--CCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCcccc
Q 000159 757 KDLIDFCKDTGL--QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (2013)
Q Consensus 757 k~li~~l~~~gL--~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~ 834 (2013)
..+++.+... + .+.++.||.+|+.+++.|....|+.+..++.. ++..+...+
T Consensus 566 ~~ll~~ll~~-l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~----~l~~L~~~l--------------------- 619 (1230)
T 1u6g_C 566 KDLFTCTIKR-LKAADIDQEVKERAISCMGQIICNLGDNLGSDLPN----TLQIFLERL--------------------- 619 (1230)
T ss_dssp HHHHHHHHHH-HSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHH----HHHHHHHHT---------------------
T ss_pred HHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHH----HHHHHHHHh---------------------
Confidence 4567666655 6 77889999999999999999999776544433 222222211
Q ss_pred CCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhcccchhHHHHH
Q 000159 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVM 913 (2013)
Q Consensus 835 ~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~-~~~~eL~~~L~~rL~DsN~~V~~ 913 (2013)
.+. ..|..++..+..+.... ..... ..+.++++.|...+.|.+..++.
T Consensus 620 ----------------------------~~e--~~r~~~~~al~~i~~~~-~~~~~~~~~~~i~~~L~~~l~~~~~~~r~ 668 (1230)
T 1u6g_C 620 ----------------------------KNE--ITRLTTVKALTLIAGSP-LKIDLRPVLGEGVPILASFLRKNQRALKL 668 (1230)
T ss_dssp ----------------------------TSS--SHHHHHHHHHHHHTTCS-SCCCCHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred ----------------------------ccc--hhHHHHHHHHHHHHhCc-cccchHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 110 14666777777665311 11111 11477888899999999999999
Q ss_pred HHHHHHHHHHHHhChhhH-hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCC
Q 000159 914 ATLITLGAVASAMGPAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLG 986 (2013)
Q Consensus 914 ~Al~~l~~La~alg~~~~-~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~ 986 (2013)
.++.+++.|+...+..+. .++..++..++..+.+....++..+..+|..+++..+ .+.+++.+...+.+....
T Consensus 669 ~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 748 (1230)
T 1u6g_C 669 GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQ 748 (1230)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccc
Confidence 999999999999986653 3444444444556678888899999999999987654 356778888878754322
Q ss_pred hhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCC-----CChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHH
Q 000159 987 AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTD-----KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (2013)
Q Consensus 987 p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D-----~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~ 1061 (2013)
......++..+............+..++..+...+.. ....+|..+.+|++.+....|...- ..+..+-
T Consensus 749 ~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~----- 822 (1230)
T 1u6g_C 749 GGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFI----- 822 (1230)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTT-----
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH-HHHHHHH-----
Confidence 2233334434433332211122445555555443322 2446788899999998887776421 1111110
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhhcccCCCChHH
Q 000159 1062 LILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1141 (2013)
Q Consensus 1062 ~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 1141 (2013)
...+. + .. ......-.+..+ ++-.
T Consensus 823 ------~~~~~------------------------------------~-~~----------~~~~~~~~l~~l---~~~g 846 (1230)
T 1u6g_C 823 ------QDVKN------------------------------------S-RS----------TDSIRLLALLSL---GEVG 846 (1230)
T ss_dssp ------TTTTT------------------------------------T-TC----------CHHHHHHHHHHH---HHHH
T ss_pred ------HHhCC------------------------------------C-Cc----------cHHHHHHHHHHH---HHhc
Confidence 00000 0 00 000000000000 0000
Q ss_pred HhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHHhhc
Q 000159 1142 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFC 1221 (2013)
Q Consensus 1142 R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~ 1221 (2013)
+ ...|.. -++ +. +.++..+.+.+-.-|..|...|-.... .+++.++.++.-.+.
T Consensus 847 ~----~~~~~~---~~~----l~--------~~~~~~l~~~~~~Vr~aAa~aLg~l~~-------~~~~~~lp~ll~~l~ 900 (1230)
T 1u6g_C 847 H----HIDLSG---QLE----LK--------SVILEAFSSPSEEVKSAASYALGSISV-------GNLPEYLPFVLQEIT 900 (1230)
T ss_dssp H----HSCCCS---CTH----HH--------HHHHHGGGCSCHHHHHHHHHHHHHHHH-------HTHHHHHHHHHHHHH
T ss_pred c----cCCCcc---ccc----HH--------HHHHHHhCCCCHHHHHHHHHHhHHHhc-------cCHHHHHHHHHHHHh
Confidence 0 001111 111 11 234445555666667777666665542 234444444444443
Q ss_pred CcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccccHHHHHhhhc
Q 000159 1222 KSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLR 1301 (2013)
Q Consensus 1222 dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~v~p~skvf~~l~~gl~ 1301 (2013)
+. +..-...|..|.+++... ..-.+. ..+..++|.|+..+|+.-+.+|..+-+++..+..+.| ..++|.|.+.++
T Consensus 901 ~~-~~~~~~~l~al~e~i~~~--~~~~~~-~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~-~~l~p~l~~~l~ 975 (1230)
T 1u6g_C 901 SQ-PKRQYLLLHSLKEIISSA--SVVGLK-PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETLLPRLKGYLI 975 (1230)
T ss_dssp SC-GGGHHHHHHHHHHHHHSS--CSTTTH-HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGTHHHHTTTSS
T ss_pred cc-chhhHHHHHHHHHHHhcC--ChhhHH-hhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh-HHHHHHHHHHhc
Confidence 32 333334556666665431 122333 4477889999999998888899999999999998865 679999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhhCCCcccccchH-HHHHHhhcCCChHHHHHHHHHHHHHHHHhChHHHHHhhc
Q 000159 1302 SKNNRTRIECVDLVGFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (2013)
Q Consensus 1302 sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l-~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~vg~ 1372 (2013)
+.|+.+|.-|+..+.+++...+.......+.+ +.+-.+++|.|..||.+|+.+|..+....|+.+..+++.
T Consensus 976 ~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~ 1047 (1230)
T 1u6g_C 976 SGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1047 (1230)
T ss_dssp SSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHH
T ss_pred CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHH
Confidence 99999998888887777654443221112233 555568899999999999999999887776665555543
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=289.17 Aligned_cols=230 Identities=29% Similarity=0.469 Sum_probs=217.3
Q ss_pred CCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHH
Q 000159 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQA 348 (2013)
Q Consensus 271 D~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~ 348 (2013)
||||+.+++||+++++ +.|++.+.+++|++|++|+..|..++. ++++...+|.++++.|.+++. |.|..|+..|+.|
T Consensus 2 d~~d~~~~~di~~~l~-~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMP-KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHhCCcccccccCC-HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 7899999999999999 689999999999999999999999886 478777889999999999995 9999999999999
Q ss_pred HHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHH
Q 000159 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (2013)
Q Consensus 349 l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~ 428 (2013)
++.|+.++++.|.+|+..++|.|+++++|+++.||+++..||.+++.. .+++.+++.|..+++++||++|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 689999999999999999999999999999
Q ss_pred HHHHhcChh-HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcC
Q 000159 429 FCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2013)
Q Consensus 429 ~~l~~~~~~-~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (2013)
.++..+.+. .+..+++.++|.+.++++|++++||++|.+|++.++.++|++.+.++++.|++.++++|++++++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a 234 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKA 234 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999887644 345778999999999999999999999999999999999998899999999999999999999875
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-22 Score=280.65 Aligned_cols=771 Identities=12% Similarity=0.137 Sum_probs=536.7
Q ss_pred hhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh-hHHHHHH
Q 000159 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR-YAKEVCD 96 (2013)
Q Consensus 18 erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~-~~~~v~~ 96 (2013)
+...+.+-..|.+|.+.|.+ +. ..|.|..|...+-.-..+.+..+...|.-.|-.++++.-..... ....|-.
T Consensus 20 ~~~~s~d~~~r~~Ae~~L~~-~~-----~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~ 93 (852)
T 4fdd_A 20 KESQSPDTTIQRTVQQKLEQ-LN-----QYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKS 93 (852)
T ss_dssp HHHTCSCHHHHHHHHHHHHH-HT-----TSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHH-HH-----hCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 34457788899999888874 32 35666555443333336778888888877776666542111111 1223444
Q ss_pred HHHHhhcC-CChhHHHHHHHHHHHHHhhhhh---hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC------cCh
Q 000159 97 AIAAKCLT-GRPKTVEKAQAVFMLWVELEAV---DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI------IPP 166 (2013)
Q Consensus 97 ~LveK~l~-~k~~~k~~A~~~ll~~~E~~~~---~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~------i~~ 166 (2013)
.|++- ++ ..+.+|..+.+++-.++..+.+ ..+++.|...+.+.++.++.+++.+|..+++.++... -.+
T Consensus 94 ~ll~~-l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~ 172 (852)
T 4fdd_A 94 ECLNN-IGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 172 (852)
T ss_dssp HHHTT-TTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCH
T ss_pred HHHHH-HcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchH
Confidence 44543 55 5778999999998888876532 3578888889999999999999999999999887631 125
Q ss_pred hHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhh
Q 000159 167 KRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELG 246 (2013)
Q Consensus 167 k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~ 246 (2013)
..+++.+..+|.+.+..||..|...+..+....+. .+...+
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-----~~~~~~---------------------------------- 213 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-----ALMLHI---------------------------------- 213 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-----HHHTSH----------------------------------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH-----HHHHHH----------------------------------
Confidence 67899999999999999999988776543322110 000000
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCCCChHH
Q 000159 247 QELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTE 325 (2013)
Q Consensus 247 ~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~~~~~~ 325 (2013)
+ ++ + +.+...+.+.++..|+.+++.|..++. .++.....+..
T Consensus 214 ------------------------~--------~~---l--~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~ 256 (852)
T 4fdd_A 214 ------------------------D--------SF---I--ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHN 256 (852)
T ss_dssp ------------------------H--------HH---H--HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHH
T ss_pred ------------------------H--------HH---H--HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 0 01 0 123444566778889999999988874 44433334567
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhcchhhhHhHHHHHHHHh-----------cc-----------CcHH
Q 000159 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRFLLPVLLEKL-----------KE-----------KKPT 381 (2013)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~~~~~~llp~LL~kl-----------kd-----------kk~~ 381 (2013)
++..+.+.+.|.+..|+..|+.++..+++. .++.+.+|...++|.++..+ .| ..-.
T Consensus 257 l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~ 336 (852)
T 4fdd_A 257 IVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWN 336 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCC
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccch
Confidence 888899999998999999999999998863 44557789999999999998 34 3446
Q ss_pred HHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHH
Q 000159 382 VAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (2013)
Q Consensus 382 V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 460 (2013)
||.++..+++.+... +..-++.+++.+...+++.+|.+|..++..|..+.+.++. .+.++++.++|.+..++.|.++.
T Consensus 337 vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~~ 415 (852)
T 4fdd_A 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKAL 415 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCHH
Confidence 899999999999876 2122455677777788899999999999999987765543 45567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccccc
Q 000159 461 VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540 (2013)
Q Consensus 461 VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s 540 (2013)
||.+|..+++.+...++......
T Consensus 416 Vr~~a~~~l~~l~~~~~~~~~~~--------------------------------------------------------- 438 (852)
T 4fdd_A 416 VRSITCWTLSRYAHWVVSQPPDT--------------------------------------------------------- 438 (852)
T ss_dssp HHHHHHHHHHHTHHHHHHSCTTT---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhccchHHH---------------------------------------------------------
Confidence 99999999987665443210000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHH
Q 000159 541 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLE 620 (2013)
Q Consensus 541 ~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ 620 (2013)
-.+++ -+.++..|.+.++..|..
T Consensus 439 -------------------------------------------------~~~~l--------l~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 439 -------------------------------------------------YLKPL--------MTELLKRILDSNKRVQEA 461 (852)
T ss_dssp -------------------------------------------------THHHH--------HHHHHHHHTCSSHHHHHH
T ss_pred -------------------------------------------------HHHHH--------HHHHHHHHhCCCHHHHHH
Confidence 00111 134667777889999999
Q ss_pred HHHHHHHHHHhc-cCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC-C-chhhHHHHHHHHHhh---hc
Q 000159 621 AISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-F-PKKCVVLCLLGISER---VA 694 (2013)
Q Consensus 621 ale~L~~~v~~~-~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~-~-~~~~~~~il~~LveK---lg 694 (2013)
|+..|..+++.. ....++.+.++..|.. .+++.+.+....+++++..++...+. + ...++..++|.++++ +.
T Consensus 462 a~~aL~~l~~~~~~~l~~~l~~ll~~L~~--~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~ 539 (852)
T 4fdd_A 462 ACSAFATLEEEACTELVPYLAYILDTLVF--AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK 539 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHH--HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhHhhHhHHHHHHHHHHH--HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcc
Confidence 999999888763 3334444444443321 12222233344566777777665432 2 134677788888753 33
Q ss_pred C--hhhhHHHHHHHHHHHhhhChhHH--HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCC
Q 000159 695 D--IKTRAHAMKCLTTFSEAVGPGFI--FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS 770 (2013)
Q Consensus 695 D--~K~r~~a~e~L~~l~e~~~~~~V--l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~ 770 (2013)
| ..++ .+.+++..++...+..++ ++.+++ .++..+...+.... ....-... ++.
T Consensus 540 d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~------------~~~~~l~~~l~~~~--------~~~~~~~~-~~~ 597 (852)
T 4fdd_A 540 DEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQ------------RCVNLVQKTLAQAM--------LNNAQPDQ-YEA 597 (852)
T ss_dssp TTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHH------------HHHHHHHHHHHHHH--------HHHHCTTT-SCC
T ss_pred cccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHH------------HHHHHHHHHHHHHH--------HhhcCCcc-cCC
Confidence 3 2343 677888888877765432 222222 12333332221110 00000011 455
Q ss_pred CcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCccc
Q 000159 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 850 (2013)
Q Consensus 771 ~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dI 850 (2013)
.+..+|..++.+++.+...+|..+.+|+.+
T Consensus 598 ~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~-------------------------------------------------- 627 (852)
T 4fdd_A 598 PDKDFMIVALDLLSGLAEGLGGNIEQLVAR-------------------------------------------------- 627 (852)
T ss_dssp CCTHHHHHHHHHHHHHHHHHGGGGHHHHHT--------------------------------------------------
T ss_pred CcchHHHHHHHHHHHHHHHHhHhHHHHhcC--------------------------------------------------
Confidence 577899999999999999999877766521
Q ss_pred ccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhh
Q 000159 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (2013)
Q Consensus 851 s~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~ 930 (2013)
..+.+-++..+.|+++.+|..+...+..++......+.+. +.++++.|...+.+.+..++..|+.+++.++..+|.+|
T Consensus 628 -~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~ 705 (852)
T 4fdd_A 628 -SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM 705 (852)
T ss_dssp -CCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGG
T ss_pred -CcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhH
Confidence 0133456666788889999999999999997665666766 48899999999988888999999999999999999999
Q ss_pred HhhhhhHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhc
Q 000159 931 EKSSKGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (2013)
Q Consensus 931 ~~~~~~llp~ll~~L~D~--k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~ 1002 (2013)
.+|+..+++.++..+.+. ...+++.+..+++.++..++ ++.+++.+...|.+.. +...|..++..+...+.
T Consensus 706 ~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~-d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 706 QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTMIS 784 (852)
T ss_dssp GGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSC-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHH
Confidence 999999999999999875 45799999999999998852 4667777777786432 34678888988888777
Q ss_pred cCCCCCChhhhHHH---HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHH
Q 000159 1003 GLSGFPDAAHLLKP---ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065 (2013)
Q Consensus 1003 ~~~~~~~~~~ll~p---l~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~ 1065 (2013)
..+.. +...+.. .+....+..++.+..-...|..+-..+|.+....++.+|+|..+..+..
T Consensus 785 ~~p~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 785 VNPSG--VIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp HCGGG--TGGGHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred hChHh--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHH
Confidence 65432 2222222 3445688899999999999999999999988999999999988877664
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-21 Score=269.04 Aligned_cols=707 Identities=10% Similarity=0.086 Sum_probs=493.9
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhhhhhh--HHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcCh--h-HHHHh
Q 000159 98 IAAKCLTGRPKTVEKAQAVFMLWVELEAVDV--FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--K-RILKM 172 (2013)
Q Consensus 98 LveK~l~~k~~~k~~A~~~ll~~~E~~~~~~--v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~--k-~il~~ 172 (2013)
+++..++....+|..|.+-+..+-. .++. .+-.++..+.+.++.++..|...|.+.+..+-. .++. + .+...
T Consensus 18 ~l~~~~s~d~~~r~~Ae~~L~~~~~--~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~-~~~~~~~~~ik~~ 94 (852)
T 4fdd_A 18 LLKESQSPDTTIQRTVQQKLEQLNQ--YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ-NFPNGVTDFIKSE 94 (852)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG-GCCHHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHh--CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHH
Confidence 3444466678889999887765532 2332 233334444677889999999999887764322 2332 2 25567
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhcccc
Q 000159 173 LPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISE 252 (2013)
Q Consensus 173 l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~ 252 (2013)
+...+.+.++.||..+..++..+.++.+.+.. .
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p------------------------------------------ 127 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNW-----P------------------------------------------ 127 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----T------------------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----H------------------------------------------
Confidence 77788899999999888887777765432100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCC-----CCCChHHH
Q 000159 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRI-----APGDFTEV 326 (2013)
Q Consensus 253 ~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki-----~~~~~~~l 326 (2013)
++ + +.+.+.+.+.+|..|..++..|..+.. .+.. .......+
T Consensus 128 ---------------------------~l---l--~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~i 175 (852)
T 4fdd_A 128 ---------------------------DL---L--PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 175 (852)
T ss_dssp ---------------------------TH---H--HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHH
T ss_pred ---------------------------HH---H--HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHH
Confidence 00 1 244555667778888899988888773 2221 12336778
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChH
Q 000159 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLV 402 (2013)
Q Consensus 327 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~----~~~l~ 402 (2013)
++.|.+.++|.+..|+..|+.++..+.......+..+...+++.++..+.|....||..+..+|..++... ...+.
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~ 255 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 255 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 88888889999999999999999988876666677788899999999999999999999999999998761 12356
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHHHHh-----------cC-----------CCH
Q 000159 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICMECL-----------ND-----------GTP 459 (2013)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~k~l-----------~D-----------s~~ 459 (2013)
.+++.+...+++..+.+|..++.|+..+.+... +..+.+++..++|.+...+ .| .+.
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 778888888899999999999999988654321 1224456778899999888 33 334
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccc
Q 000159 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA 539 (2013)
Q Consensus 460 ~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 539 (2013)
.||.+|..+++.+...+|+..+..+
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l------------------------------------------------------- 360 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHI------------------------------------------------------- 360 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHH-------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHH-------------------------------------------------------
Confidence 5677777777777666664321110
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHH
Q 000159 540 SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 619 (2013)
Q Consensus 540 s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl 619 (2013)
.+-+...+.+.+|+.|.
T Consensus 361 ---------------------------------------------------------------~~~l~~~l~~~~~~~R~ 377 (852)
T 4fdd_A 361 ---------------------------------------------------------------LPLLKELLFHHEWVVKE 377 (852)
T ss_dssp ---------------------------------------------------------------HHHHHHHHTCSSHHHHH
T ss_pred ---------------------------------------------------------------HHHHHHHhcCCCHHHHH
Confidence 12233456677899999
Q ss_pred HHHHHHHHHHHhccC-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC-CCchhhHHHHHHHHHhhhcC--
Q 000159 620 EAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGISERVAD-- 695 (2013)
Q Consensus 620 ~ale~L~~~v~~~~~-~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~-~~~~~~~~~il~~LveKlgD-- 695 (2013)
+|+..|+.+.++..+ .....+.++..+.. .++|.+..|...++.++..+.+..+ .........+++.++..+.|
T Consensus 378 aa~~alg~i~~~~~~~~~~~l~~~l~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455 (852)
T ss_dssp HHHHHHHHTTTTTHHHHGGGHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence 999999988765322 12234445555432 4689999999999999998887543 22344677889999988876
Q ss_pred hhhhHHHHHHHHHHHhhhChh------HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHH--
Q 000159 696 IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCK-- 764 (2013)
Q Consensus 696 ~K~r~~a~e~L~~l~e~~~~~------~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~---~k~li~~l~-- 764 (2013)
.++|..|..+|..+++..+.. .+++.++..+ +....+....++..+..++...|..... +..+++.+.
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~ 534 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 534 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 578999999999999876543 2444444444 3334455444555555555544532111 233444433
Q ss_pred -hcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCC
Q 000159 765 -DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843 (2013)
Q Consensus 765 -~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d 843 (2013)
.. +.+.++.+| .++++++.+...+|..+.+|+..+-+.++..+...+.+..... .. .+
T Consensus 535 ~~~-l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~---------~~----------~~ 593 (852)
T 4fdd_A 535 WNM-LKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN---------AQ----------PD 593 (852)
T ss_dssp HHH-SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHH---------HC----------TT
T ss_pred HHh-cccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cC----------Cc
Confidence 33 677788887 7899999999999999999998888877777766543210000 00 00
Q ss_pred CCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhcccchhHHHHHHHHHHHHHH
Q 000159 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAV 922 (2013)
Q Consensus 844 ~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~L 922 (2013)
.....+-..|..+++.+..++...+..+.+.. -..+++.+...+.|.+..|+..++.+++.+
T Consensus 594 -----------------~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l 656 (852)
T 4fdd_A 594 -----------------QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 656 (852)
T ss_dssp -----------------TSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -----------------ccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 00111223577788889988875444444321 057889999999999999999999999999
Q ss_pred HHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhhHHHHHHH
Q 000159 923 ASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDW 996 (2013)
Q Consensus 923 a~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~ 996 (2013)
+..+|..|.+|+..++|.+++.|.+....+|..|..+++.++.++| +..+++.+...|.++..+..++..++..
T Consensus 657 ~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~ 736 (852)
T 4fdd_A 657 TKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAIT 736 (852)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 9999999999999999999999998889999999999999999886 2456667777777654344677777666
Q ss_pred HHHHhccCCC--CCChhhhHHHHHhhcCC-CChHHHHHHHHHHHHHHHHcCh
Q 000159 997 LSKQLTGLSG--FPDAAHLLKPASIAMTD-KSSDVRKAAEACIVEILRAGGQ 1045 (2013)
Q Consensus 997 L~~~l~~~~~--~~~~~~ll~pl~~~L~D-~~~dVR~aA~~~L~~l~~~~G~ 1045 (2013)
+.+.....+. .+.+..++.+++..|.+ .+.+.|..|..+|-.++..-+.
T Consensus 737 igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 737 IGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 6665544322 24577888888888854 6667799999999999888654
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-21 Score=267.71 Aligned_cols=733 Identities=11% Similarity=0.099 Sum_probs=504.1
Q ss_pred hhc-cCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcC--CcHHHHHHHHHHHHHHHHHhc----------
Q 000159 18 DRL-LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD--SNAPVQDKALDALIAYLKAAD---------- 84 (2013)
Q Consensus 18 erl-~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~D--sN~~vqe~~leal~~~v~~~~---------- 84 (2013)
+.+ .+.+-..|.+|-+.|.+ +... +.|.| ...+...+.+ .+..+...|...|-.+++...
T Consensus 11 ~~~~~s~d~~~r~~Ae~~L~~-~~~~---~~~~~---~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 11 ENSILSPDQNIRLTSETQLKK-LSND---NFLQF---AGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHCSSHHHHHHHHHHHHH-HHHH---CHHHH---HHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHcccCcCHHHHHHHHHHHHH-HHhh---CHHHH---HHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 345 67788899999999976 4321 12444 2233444444 367777777776666553210
Q ss_pred -hh-hh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC-ChhhHHHHHHHHHHHH
Q 000159 85 -AD-AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK-VAKAVVPAIDVMFQAL 156 (2013)
Q Consensus 85 -~~-~~-~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~----~~v~~~L~~~~~~K-npKv~~~~l~~L~~~l 156 (2013)
.. .. .....|-..|++-+....+.+|..+..++-.++..+-+ ..+++.|...+.+. ++.++..++.++..+.
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~ 163 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMC 163 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 00 11 12234455566653335788888888888777765433 35778888888777 9999999999999999
Q ss_pred HHhCCCC--c--ChhHHHHhhhhhhcCC--ChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC
Q 000159 157 SEFGAKI--I--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT 230 (2013)
Q Consensus 157 ~~fG~~~--i--~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~ 230 (2013)
..++... + ....+++.+...+.+. +..||..|..++..+..|++.. + .. ......
T Consensus 164 ~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-----~-~~--~~~~~~----------- 224 (861)
T 2bpt_A 164 ESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-----M-ER--EGERNY----------- 224 (861)
T ss_dssp HTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-----H-TS--HHHHHH-----------
T ss_pred HcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-----c-cC--hhHHHH-----------
Confidence 9888642 1 2456888888889998 8999999998887766555421 1 00 000000
Q ss_pred CCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHH
Q 000159 231 ARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310 (2013)
Q Consensus 231 ~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~ 310 (2013)
++ ..+.+.+.+.+|+.|..+++.|.
T Consensus 225 --------------------------------------------------ll-----~~l~~~~~~~~~~~r~~a~~~l~ 249 (861)
T 2bpt_A 225 --------------------------------------------------LM-----QVVCEATQAEDIEVQAAAFGCLC 249 (861)
T ss_dssp --------------------------------------------------HH-----HHHHHHHTCSCHHHHHHHHHHHH
T ss_pred --------------------------------------------------HH-----HHHHHHhcCCCHHHHHHHHHHHH
Confidence 00 11223346678999999999998
Q ss_pred HHhc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh-----------------cchhhhHhHHHHH
Q 000159 311 KLAS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT-----------------HFSGSSRFLLPVL 371 (2013)
Q Consensus 311 ~l~~-~pki~~~~~~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~-----------------~f~~~~~~llp~L 371 (2013)
.++. .+......+. .++..+...+.|.+..|+..|+.++..++..... .+.++...++|.+
T Consensus 250 ~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 329 (861)
T 2bpt_A 250 KIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNL 329 (861)
T ss_dssp HHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 8874 3332222234 6777777888899999999999999999886421 1346778999999
Q ss_pred HHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000159 372 LEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (2013)
Q Consensus 372 L~klkd-------kk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (2013)
+..+.+ ....+|.++..+|..+... +...++.+++.+...+++.+|.+|..++..+..+.....+..+.+++
T Consensus 330 l~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l 409 (861)
T 2bpt_A 330 LNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV 409 (861)
T ss_dssp HHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred HHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999974 3458999999999998876 21234567777778888999999999999999887665545566778
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhH-HHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCC
Q 000159 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (2013)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~-~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s 522 (2013)
+.++|.+...+.|.++.||.++..+++.+...++.... .++
T Consensus 410 ~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-------------------------------------- 451 (861)
T 2bpt_A 410 HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-------------------------------------- 451 (861)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--------------------------------------
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--------------------------------------
Confidence 99999999999999999999999988888766553100 000
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccC
Q 000159 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (2013)
Q Consensus 523 ~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l 602 (2013)
.+++
T Consensus 452 --------------------------------------------------------------------~~~~-------- 455 (861)
T 2bpt_A 452 --------------------------------------------------------------------LPGV-------- 455 (861)
T ss_dssp --------------------------------------------------------------------HHHH--------
T ss_pred --------------------------------------------------------------------HHHH--------
Confidence 0111
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhcc-----CcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQ-----NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF 677 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-----~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~ 677 (2013)
-+.++..|.+. ++.|..+...|..+++..+ ...++.+.++..|...-.-.|.+..|...+++++..++...+.-
T Consensus 456 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 456 VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 13344556554 7788888888887777643 12234444443332100012555678899999999999887654
Q ss_pred chhhHHHHHHHHHhhhcC-----------------hhhhHHHHHHHHHHHhhhChh------HHHHHHHHHhhhCCCh-h
Q 000159 678 PKKCVVLCLLGISERVAD-----------------IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNP-K 733 (2013)
Q Consensus 678 ~~~~~~~il~~LveKlgD-----------------~K~r~~a~e~L~~l~e~~~~~------~Vl~~L~~~l~~~Knp-K 733 (2013)
....+..++|.+++.+.+ ..++..+.++|..+++..+.+ .+++.++..+ ...++ .
T Consensus 535 ~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~ 613 (861)
T 2bpt_A 535 VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLL-EKKDSAF 613 (861)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHH-HSTTGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-ccCCCCc
Confidence 444667788888877653 135778888999999877653 2344444443 45666 8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHH
Q 000159 734 VLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (2013)
Q Consensus 734 v~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (2013)
++..++.++..++..+|....+ +..+++.+... +.+.++.||..|..+++.+...+|..+.+|+..+-|.+++.+.+.
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 692 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKA-LNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP 692 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH-HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc
Confidence 9999999999999888753221 45678888876 888899999999999999999999888777766555544433210
Q ss_pred HhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC
Q 000159 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892 (2013)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~ 892 (2013)
+.++.+|..++..+..++...+..+.+.
T Consensus 693 ---------------------------------------------------~~~~~vr~~~~~~l~~l~~~~~~~~~~~- 720 (861)
T 2bpt_A 693 ---------------------------------------------------NARRELKPAVLSVFGDIASNIGADFIPY- 720 (861)
T ss_dssp ---------------------------------------------------TCCTTHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred ---------------------------------------------------cccHhhhHHHHHHHHHHHHHhhhhHHHH-
Confidence 0124578888888988887544444443
Q ss_pred hhhHHHHHHhcccc-----------hhHHHHHHHHHHHHHHHHHhC---hhhHhhhhhHHHHHHHHhCCC----cHHHHH
Q 000159 893 TGELFGGLRGRLYD-----------SNKNLVMATLITLGAVASAMG---PAVEKSSKGVLSDILKCLGDN----KKHMRE 954 (2013)
Q Consensus 893 ~~eL~~~L~~rL~D-----------sN~~V~~~Al~~l~~La~alg---~~~~~~~~~llp~ll~~L~D~----k~~Vr~ 954 (2013)
+..+++.|...+.. ....|+..++++++.++..+| ..|.+|+..+++.+...+.|. +..||.
T Consensus 721 l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~ 800 (861)
T 2bpt_A 721 LNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSR 800 (861)
T ss_dssp HHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHH
Confidence 36777777776652 235788999999999999998 568999999999999998874 788999
Q ss_pred HHHHHHHHHHHhc-Cc------h-hhHHHHHHHHhc-CCCChhhHHHHHHHHHHHh
Q 000159 955 CTLTVLDAWLAAV-HL------D-KMVPYVTTALTD-AKLGAEGRKDLFDWLSKQL 1001 (2013)
Q Consensus 955 aa~~aL~~i~~~~-gl------~-~ll~~l~~~L~~-~k~~p~~R~~~l~~L~~~l 1001 (2013)
+|..++..++..+ |. . .+++.+...+.. ...+. .-.+...|..+.+
T Consensus 801 ~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~-~~~~~~~wa~~~~ 855 (861)
T 2bpt_A 801 AAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQ-ATKDTARWAREQQ 855 (861)
T ss_dssp HHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCH-HHHHHHHHHHHHH
Confidence 9999999999998 63 2 556666666653 21112 2256667766544
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-23 Score=273.93 Aligned_cols=553 Identities=18% Similarity=0.191 Sum_probs=379.4
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHh
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~-~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 366 (2013)
..+...+.+.+|+.|..|+..|..++.. +.+ ....++++.|...+ |.+..|+..++.+++.++..++.. .|...
T Consensus 13 ~~l~~~l~s~~~~~R~~A~~~l~~i~~~--~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~ 87 (588)
T 1b3u_A 13 AVLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHC 87 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGG
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHH--hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHH
Confidence 3577889999999999999999887631 111 12356778887766 777889999999998877665542 57788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH----hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000159 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2013)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~----~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2013)
++|.+...+.+....||+++..+|..+... .+.. .+++.+....++.++.+|..++.++..+....+.. .
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~--~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~ 161 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----V 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----H
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----H
Confidence 999988888899999999999999999875 3332 34555655667889999999999998877665532 2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCC
Q 000159 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (2013)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s 522 (2013)
.+.++|.+..++.|.+++||.+|.++++.+...+|.+.. .+.+-+ .+...+... .
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~l~~----~l~~~~~d~---------~--------- 216 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV---KSEIIP----MFSNLASDE---------Q--------- 216 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH---HHTHHH----HHHHHHTCS---------C---------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH---HHHHHH----HHHHHhcCC---------c---------
Confidence 478899999999999999999999999999998885321 111111 111111100 0
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccC
Q 000159 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (2013)
Q Consensus 523 ~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l 602 (2013)
..++..+...++ ... ..++.++. ...+
T Consensus 217 ---------~~vr~~a~~~l~--------------------------------~l~--------~~~~~~~~----~~~~ 243 (588)
T 1b3u_A 217 ---------DSVRLLAVEACV--------------------------------NIA--------QLLPQEDL----EALV 243 (588)
T ss_dssp ---------HHHHTTHHHHHH--------------------------------HHH--------HHSCHHHH----HHHT
T ss_pred ---------HHHHHHHHHHHH--------------------------------HHH--------HhCCHHHH----HHHH
Confidence 000000000000 000 00011111 1122
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~ 682 (2013)
-+-+...+.+.+|+.|..+++.|..+....+. ....
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--------------------------------------------~~~~ 279 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--------------------------------------------EITK 279 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--------------------------------------------HHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--------------------------------------------ccch
Confidence 33444555555666666665555544333211 0011
Q ss_pred HHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhChh----H----HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC
Q 000159 683 VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----F----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (2013)
Q Consensus 683 ~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~----~----Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~ 752 (2013)
..+++.++.-+.| ..+|..+..+|..+++..+.+ . +++.+... .++++|+||..++.+|..+...+|..
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 2234444444444 346666777777777665543 2 33333333 36889999999999999988877753
Q ss_pred CCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCcc
Q 000159 753 HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (2013)
Q Consensus 753 ~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~ 832 (2013)
. -...+++.+..+ +.+.++.||.+|...++.+...+|... +..
T Consensus 359 ~-~~~~l~p~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~--------------------------------- 401 (588)
T 1b3u_A 359 N-TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--LSQ--------------------------------- 401 (588)
T ss_dssp H-HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH--HHH---------------------------------
T ss_pred H-HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHHHHhcCHHH--HHH---------------------------------
Confidence 2 134577777777 899999999999999988887766421 000
Q ss_pred ccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHH
Q 000159 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLV 912 (2013)
Q Consensus 833 ~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~ 912 (2013)
.+.+.+...+.|.+|++|..+++.+..+....+... ....+++.|...+.|.+..|+
T Consensus 402 --------------------~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~Vr 458 (588)
T 1b3u_A 402 --------------------SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIR 458 (588)
T ss_dssp --------------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHH
T ss_pred --------------------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCCcHHHH
Confidence 023345556678899999999999999886432221 125788999999999999999
Q ss_pred HHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCCCChh
Q 000159 913 MATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAE 988 (2013)
Q Consensus 913 ~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~----~ll~~l~~~L~~~k~~p~ 988 (2013)
..|+.+++.++..+|..+ +...++|.++..+.|.+..+|.++..++..++..+|.+ .++|.+...+.++ ++.
T Consensus 459 ~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~--~~~ 534 (588)
T 1b3u_A 459 EAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VAN 534 (588)
T ss_dssp HHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHH
T ss_pred HHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC--Cch
Confidence 999999999999999875 46788999999999999999999999999999988754 5666777777766 589
Q ss_pred hHHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHH
Q 000159 989 GRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
+|..++..+.......+.. .....+.| +...++|.+.+||..|..++..+
T Consensus 535 Vr~~a~~~l~~l~~~~~~~-~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 535 VRFNVAKSLQKIGPILDNS-TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 9999999998877655432 12234444 66677999999999999998764
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=255.63 Aligned_cols=227 Identities=15% Similarity=0.186 Sum_probs=209.7
Q ss_pred CCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHH-HHHhccccCC--CCChhhHHHHHHhcc-cchhHHHHHHHH
Q 000159 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMATL 916 (2013)
Q Consensus 841 ~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~-il~~a~~~I~--~~~~~eL~~~L~~rL-~DsN~~V~~~Al 916 (2013)
.+|.++++||.++||++|.+.+.+++|++|++|++.|.. ++++ ++++. ...|++++..|++.+ +|+|..|+..|+
T Consensus 4 ~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 4 MASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp SCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hHhhcChhhhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 478999999999999999999999999999999999999 8864 46776 456799999999999 899999999999
Q ss_pred HHHHHHHHHhC-hhhH-hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc------C-chhhHHHHHHHHhcCCCCh
Q 000159 917 ITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKLGA 987 (2013)
Q Consensus 917 ~~l~~La~alg-~~~~-~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~------g-l~~ll~~l~~~L~~~k~~p 987 (2013)
++++.|+..++ +.|. +|...++|.++.+++|+++.|++++..||++|+.++ + ++.+++.+...|+++ ++
T Consensus 83 ~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~ 160 (249)
T 2qk1_A 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP 160 (249)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--Ch
Confidence 99999999999 9999 999999999999999999999999999999999999 7 889999999999987 68
Q ss_pred hhHHHHHHHHHHHhccCCCC-----CCh-hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHH
Q 000159 988 EGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (2013)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~-----~~~-~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~ 1061 (2013)
.+|.+++.||.+++...+.. +.+ ..+++.+..+++|.+++||.+|.+||..++.++|++.|.+++..|++.+++
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHH
Confidence 99999999999999887652 234 567777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000159 1062 LILERIKLN 1070 (2013)
Q Consensus 1062 ~i~~~l~k~ 1070 (2013)
+|+++++++
T Consensus 241 ki~~~~~~~ 249 (249)
T 2qk1_A 241 KIEETVKTL 249 (249)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999863
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-20 Score=258.46 Aligned_cols=721 Identities=12% Similarity=0.077 Sum_probs=480.0
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcC--CChhHHHHHHHHHHHHH----------------h
Q 000159 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWV----------------E 122 (2013)
Q Consensus 61 v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~--~k~~~k~~A~~~ll~~~----------------E 122 (2013)
+.+.+..++..|.+.|..|-+.. ...++..|++-..+ ..+.+|..|..++-.++ +
T Consensus 10 ~~s~d~~~r~~A~~~L~~~~~~~-------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 10 TVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHhcC-------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 34556677777777766554321 12233333333222 25667777655544332 1
Q ss_pred hh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcCC--ChHHHHHHHHHHHHHHHh
Q 000159 123 LE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRW 198 (2013)
Q Consensus 123 ~~--~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~ 198 (2013)
+. ....+-+.|+.++.+.++++ ..+..++..+....+.. -....+++.+...+.+. +..||..+..++..+..+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcc-cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 21 12355566788888888899 88999998888766541 13457899999999999 999999999998888877
Q ss_pred hCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000159 199 IGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP 278 (2013)
Q Consensus 199 lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~ 278 (2013)
++++.+ ...-+..+.
T Consensus 161 ~~~~~~-----~~~~~~ll~------------------------------------------------------------ 175 (876)
T 1qgr_A 161 IDPEQL-----QDKSNEILT------------------------------------------------------------ 175 (876)
T ss_dssp SCHHHH-----GGGHHHHHH------------------------------------------------------------
T ss_pred cCHhhH-----HhHHHHHHH------------------------------------------------------------
Confidence 653211 110000000
Q ss_pred ccccccCcchhhhhhhccC--CHHHHHHHHHHHHHHhcC--CCCCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Q 000159 279 VDILTPLEKSGFWEGVKAT--KWSERKDAVAELTKLAST--KRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353 (2013)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~--kWkeR~eaL~~L~~l~~~--pki~~~~~-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La 353 (2013)
.+...+.+. +|..|..|++.|..++.. ..+....+ ..+++.+...+.|.+..++..++.|+..++
T Consensus 176 ----------~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 176 ----------AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp ----------HHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ----------HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 122222222 567788888888776531 00111001 136777777778888899999999999999
Q ss_pred HHhhhcchhhhH-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------------------CCC-----hHhHHHH
Q 000159 354 RGLRTHFSGSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------------------CLN-----LVDVVED 407 (2013)
Q Consensus 354 ~~L~~~f~~~~~-~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~--------------------~~~-----l~~il~~ 407 (2013)
....+.|.+|+. .+++.++..+++....|+..+.+++..+.... +.. +..+++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 325 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHH
Confidence 998888999999 99999999999999999999888888776530 011 1345555
Q ss_pred HHHHhh-------cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchh
Q 000159 408 VKTSVK-------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (2013)
Q Consensus 408 l~~~l~-------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~ 480 (2013)
++..+. +.+|.+|..++..|..+....+. ..++.++|.+...+.|.++.||.+|..+++.+....+...
T Consensus 326 ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHH
Confidence 555553 34677777777777766654432 2245667777777777777777777777765543222111
Q ss_pred HHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCC
Q 000159 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 560 (2013)
Q Consensus 481 ~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~ 560 (2013)
+.+++
T Consensus 402 ~~~~~--------------------------------------------------------------------------- 406 (876)
T 1qgr_A 402 LKPLV--------------------------------------------------------------------------- 406 (876)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 11111
Q ss_pred CCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccC---cch
Q 000159 561 KPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQ 637 (2013)
Q Consensus 561 k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~---~~~ 637 (2013)
.. +-+.++..|.+.+|..|..|+..|..+...... ...
T Consensus 407 --------------------------------------~~-~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 407 --------------------------------------IQ-AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp --------------------------------------HH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred --------------------------------------HH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 01 113456677888899999999999988876432 123
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--------------CCchhhHHHHHHHHHhhhcCh-----hh
Q 000159 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--------------KFPKKCVVLCLLGISERVADI-----KT 698 (2013)
Q Consensus 638 ~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~--------------~~~~~~~~~il~~LveKlgD~-----K~ 698 (2013)
..+.++..+.. .+.|. ..|...++.++..++..++ .....++..+++.|+..+.+. .+
T Consensus 448 ~l~~~l~~l~~--~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 448 YLAPLLQCLIE--GLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp THHHHHHHHHH--HTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTH
T ss_pred HHHHHHHHHHH--HHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhH
Confidence 34444444322 24554 7788889999998887643 112346788899888877652 57
Q ss_pred hHHHHHHHHHHHhhhChh------HHHHHHHHHhhh----------CCC----hhHHHHHHHHHHHHHHHhC-CCCC-Ch
Q 000159 699 RAHAMKCLTTFSEAVGPG------FIFERLYKIMKD----------HKN----PKVLSEGILWMVSAVEDFG-VSHL-KL 756 (2013)
Q Consensus 699 r~~a~e~L~~l~e~~~~~------~Vl~~L~~~l~~----------~Kn----pKv~~~~l~~L~~li~~fG-~~~l-~~ 756 (2013)
|..+.++|..++...+.+ .+++.++..+.. ..+ +.++..++.++..++..+| .... -+
T Consensus 525 r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 604 (876)
T 1qgr_A 525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS 604 (876)
T ss_dssp HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH
Confidence 888999999999877632 233333333221 111 5567778888888887766 2111 23
Q ss_pred hhHHHHHHhcCCCCCc--HhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCcccc
Q 000159 757 KDLIDFCKDTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (2013)
Q Consensus 757 k~li~~l~~~gL~~~n--~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~ 834 (2013)
..+++.+... +.+.+ +.||..+..+++.+....|..+.+|+..+-|.+
T Consensus 605 ~~l~~~l~~~-l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l----------------------------- 654 (876)
T 1qgr_A 605 DVVMASLLRM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL----------------------------- 654 (876)
T ss_dssp HHHHHHHHHH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHH-HHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------------------------
Confidence 5677777776 77765 479999999999999888877776664443333
Q ss_pred CCCCCCCCCCCCCcccccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc--hhHHH
Q 000159 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNL 911 (2013)
Q Consensus 835 ~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~-~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D--sN~~V 911 (2013)
+..+.+. +|.+|..++..+..++......+.+. ..+++..|...+.+ .+..+
T Consensus 655 ------------------------~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~ 709 (876)
T 1qgr_A 655 ------------------------GIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF-CDEVMQLLLENLGNENVHRSV 709 (876)
T ss_dssp ------------------------HHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHTCTTSCGGG
T ss_pred ------------------------HHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHhCCccccHHh
Confidence 2333333 67889999999999987554455554 47888888888866 46779
Q ss_pred HHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC------------
Q 000159 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------ 968 (2013)
Q Consensus 912 ~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-----------~~Vr~aa~~aL~~i~~~~g------------ 968 (2013)
+..++.+++.|+..+|..|.+|+..++|.+++.+.++. ..+|..+..++..++..++
T Consensus 710 ~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~ 789 (876)
T 1qgr_A 710 KPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVML 789 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGG
T ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHH
Confidence 99999999999999999999999999999999998653 3799999999999887753
Q ss_pred chhhHHHHHHHH----hcCCCChhhHHHHHHHHHHHhccCCC-C--CC-hhhhHHHHHh-hcCCCChHHHHHHHHHHHHH
Q 000159 969 LDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSG-F--PD-AAHLLKPASI-AMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 969 l~~ll~~l~~~L----~~~k~~p~~R~~~l~~L~~~l~~~~~-~--~~-~~~ll~pl~~-~L~D~~~dVR~aA~~~L~~l 1039 (2013)
+..+++.+...+ .++..+..+|..++..|......++. . +. ...++.+++. ++.|.+++||.+|..+++.+
T Consensus 790 ~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 790 VQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp SGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 234556555555 33311467898888887776665543 1 11 2356778888 99999999999999999887
Q ss_pred HH
Q 000159 1040 LR 1041 (2013)
Q Consensus 1040 ~~ 1041 (2013)
.+
T Consensus 870 ~~ 871 (876)
T 1qgr_A 870 RK 871 (876)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-20 Score=259.37 Aligned_cols=702 Identities=13% Similarity=0.129 Sum_probs=473.5
Q ss_pred hccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCC-cHHHHHHHHHHHHHHHHHhchh---hhhhHHHH
Q 000159 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS-NAPVQDKALDALIAYLKAADAD---AGRYAKEV 94 (2013)
Q Consensus 19 rl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds-N~~vqe~~leal~~~v~~~~~~---~~~~~~~v 94 (2013)
.|.+.+-+.|..+.+-+...+...... ..|..+.+.+...+.+. |+.+.+.++.++..+++..+.. ...+...+
T Consensus 103 ~l~~~~~~vr~~~~~~l~~i~~~~~p~--~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~l 180 (861)
T 2bpt_A 103 ALVSIEPRIANAAAQLIAAIADIELPH--GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNI 180 (861)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHGGG--TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHH
T ss_pred HHCCCchHHHHHHHHHHHHHHHhhCcc--cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Confidence 356777788888887777766542110 13445566667778887 9999999999999999876543 24456677
Q ss_pred HHHHHHhhcCC--ChhHHHHHHHHHHHHHhh-h-h------hhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCc
Q 000159 95 CDAIAAKCLTG--RPKTVEKAQAVFMLWVEL-E-A------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKII 164 (2013)
Q Consensus 95 ~~~LveK~l~~--k~~~k~~A~~~ll~~~E~-~-~------~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i 164 (2013)
++.++.-.-.. .+.+|..|.+++..+++. . . ...+++.|...+.+.+++++..++.+|..++..++....
T Consensus 181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 260 (861)
T 2bpt_A 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260 (861)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776543224 678999999998876543 1 1 134677777778889999999999999999999886432
Q ss_pred C-hh-HHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCc---cchh
Q 000159 165 P-PK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR---KIRA 239 (2013)
Q Consensus 165 ~-~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R---~~rs 239 (2013)
+ +. .+++.+...+.+.+..||..|..++..+...... + . .+. . +. + ..|.+ +++.
T Consensus 261 ~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~-~-~~~-----------~--~~--~-~~~~~~~~~~~~ 320 (861)
T 2bpt_A 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID--I-A-YEL-----------A--QF--P-QSPLQSYNFALS 320 (861)
T ss_dssp HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH--H-H-HHH-----------H--HC--T-TCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--h-h-hhh-----------h--hc--c-CCchhhHHHHHH
Confidence 2 34 6777777889999999999999988777665421 0 0 000 0 00 0 01111 0000
Q ss_pred hhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCC
Q 000159 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIA 319 (2013)
Q Consensus 240 ~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~ 319 (2013)
.-..-.+. --...... ++ | ..+.+|..|+.+...|..++..- .
T Consensus 321 ~~~~il~~--ll~~l~~~---------~~--d----------------------~~d~~~~~r~~a~~~L~~l~~~~--~ 363 (861)
T 2bpt_A 321 SIKDVVPN--LLNLLTRQ---------NE--D----------------------PEDDDWNVSMSAGACLQLFAQNC--G 363 (861)
T ss_dssp HHHHHHHH--HHHHTTCC---------CC--C-----------------------CCCCCHHHHHHHHHHHHHHHHH--G
T ss_pred HHHHHHHH--HHHHHHhc---------cc--c----------------------cccccCcHHHHHHHHHHHHHHHc--c
Confidence 00000000 00000000 00 0 01235899999999998877421 1
Q ss_pred CCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh-hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-c
Q 000159 320 PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-G 397 (2013)
Q Consensus 320 ~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~-~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~-~ 397 (2013)
...+..+++.+...+.|.+..++..|+.+++.++.+.+ ..+.+|...++|.++..++|.++.||.++..++..+... +
T Consensus 364 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 364 NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 22356788899999999999999999999999998876 678899999999999999999999999999999888865 1
Q ss_pred -----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC---hhHHHHhhhhHHHHHHHHhc--CCCHHHHHHHHH
Q 000159 398 -----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLN--DGTPEVRDAAFS 467 (2013)
Q Consensus 398 -----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~---~~~l~~~l~~l~p~l~k~l~--Ds~~~VR~aA~~ 467 (2013)
...+..+++.+..++++. +.+|..++..|..+.+... +..+.++++.+++.+.+++. |.++.||.++.+
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 124678899999999876 9999999999998887654 34466788999999999998 555899999999
Q ss_pred HHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCC
Q 000159 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (2013)
Q Consensus 468 al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P 547 (2013)
+++.+....|+. +.+++..+-+.-.+.+.+.+.-. .
T Consensus 523 al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~---------------------------------------~---- 558 (861)
T 2bpt_A 523 ALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVD---------------------------------------E---- 558 (861)
T ss_dssp HHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSC---------------------------------------G----
T ss_pred HHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhh---------------------------------------c----
Confidence 999999999975 66777766554444444321000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHH
Q 000159 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627 (2013)
Q Consensus 548 ~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~ 627 (2013)
...+.++-+ .....|..+++.|..
T Consensus 559 ---------------------------------------~i~~~~~~~-----------------~~~~~~~~~~~~l~~ 582 (861)
T 2bpt_A 559 ---------------------------------------NQLTLEDAQ-----------------SLQELQSNILTVLAA 582 (861)
T ss_dssp ---------------------------------------GGCCHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred ---------------------------------------ccCChhhHH-----------------HHHHHHHHHHHHHHH
Confidence 000100000 001123444444444
Q ss_pred HHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC--h-hhhHHHHH
Q 000159 628 QVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--I-KTRAHAMK 704 (2013)
Q Consensus 628 ~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~-K~r~~a~e 704 (2013)
++...+. -....+..+++.++.-+.+ . .+|..+..
T Consensus 583 l~~~~~~------------------------------------------~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~ 620 (861)
T 2bpt_A 583 VIRKSPS------------------------------------------SVEPVADMLMGLFFRLLEKKDSAFIEDDVFY 620 (861)
T ss_dssp HHHHCGG------------------------------------------GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHH
T ss_pred HHHHhhh------------------------------------------hhHHHHHHHHHHHHHHHccCCCCcHHHHHHH
Confidence 4433221 0011222233333332222 2 45667777
Q ss_pred HHHHHHhhhChhH------HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCCCc--HhH
Q 000159 705 CLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSA--AAT 775 (2013)
Q Consensus 705 ~L~~l~e~~~~~~------Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~~n--~~V 775 (2013)
++..+++..+.++ +++.++..+ .++++.++..++..+..++..+|.... .+..+++.+... +.+.+ +.|
T Consensus 621 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~v 698 (861)
T 2bpt_A 621 AISALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM-ISNPNARREL 698 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH-HHCTTCCTTH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHH-hCCccccHhh
Confidence 7777776655432 344455554 678999999999999999988874211 134566666665 77664 899
Q ss_pred HHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccc
Q 000159 776 RNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFT 855 (2013)
Q Consensus 776 R~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~ 855 (2013)
|..+..+++.+....|+.+.+|+..+-|.+...++. .. + + . .
T Consensus 699 r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~-----~~-~---~-----------------~------------d 740 (861)
T 2bpt_A 699 KPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNT-----KP-E---N-----------------G------------T 740 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC-----CC-S---S-----------------S------------S
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc-----CC-C---C-----------------C------------C
Confidence 999999999999999999999998888777665421 00 0 0 0 0
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhcc---ccCCCCChhhHHHHHHhcccch----hHHHHHHHHHHHHHHHHHh-C
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEEAN---KRIQPAGTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAM-G 927 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~a~---~~I~~~~~~eL~~~L~~rL~Ds----N~~V~~~Al~~l~~La~al-g 927 (2013)
++.. +..+.+|..+++.+..++...+ ..+.+. ..+++..|...+.|. +..|+..|+.+++.|+..+ |
T Consensus 741 ~d~~----~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~-~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g 815 (861)
T 2bpt_A 741 LEAL----DYQIKVLEAVLDAYVGIVAGLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD 815 (861)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHH----HHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCC
Confidence 0110 1136789999999999997532 223443 377888888888885 8899999999999999999 9
Q ss_pred hhhHhhhh-hHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHhc
Q 000159 928 PAVEKSSK-GVLSDILKCLG---DNKKHMRECTLTVLDAWLAAV 967 (2013)
Q Consensus 928 ~~~~~~~~-~llp~ll~~L~---D~k~~Vr~aa~~aL~~i~~~~ 967 (2013)
+.|.+|.. .++|.+++.+. +....+++.|.=++..+.+.+
T Consensus 816 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 816 GSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp STTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999 89999999887 455678888887777776543
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=241.94 Aligned_cols=228 Identities=18% Similarity=0.259 Sum_probs=209.9
Q ss_pred CCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc-chhHHHHHHHHHHHH
Q 000159 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLG 920 (2013)
Q Consensus 842 ~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~ 920 (2013)
.|.++++||.++|++.+++.+.|++|++|++|++.|..++..+ ..+....+.+++..|+.++. |.|..|+..|+.+++
T Consensus 4 ~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 4 MDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp HHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhCCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999863 34545557999999999995 999999999999999
Q ss_pred HHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000159 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2013)
Q Consensus 921 ~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2013)
.|+..+|+.|.+|+..++|.++.+++|++..||+++..+|.+++..++++.++|.+...|.++ ++.+|.+++.||...
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987 699999999999998
Q ss_pred hccCCCC----CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCC
Q 000159 1001 LTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (2013)
Q Consensus 1001 l~~~~~~----~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~ 1072 (2013)
+..++.. ..+..+++.+..+|+|++++||++|..+++.++.++|.+.+.+++..|++.++++|.++++++..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8876432 24566777799999999999999999999999999999999999999999999999999999764
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-19 Score=247.27 Aligned_cols=727 Identities=14% Similarity=0.104 Sum_probs=483.6
Q ss_pred hhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcC--CcHHHHHHHHHHHHHHHHHhc--------h--
Q 000159 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD--SNAPVQDKALDALIAYLKAAD--------A-- 85 (2013)
Q Consensus 18 erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~D--sN~~vqe~~leal~~~v~~~~--------~-- 85 (2013)
+.+.+.+-..|.+|-+.|.+ +... .-|.| ...+-..+.+ .+..+...|..+|..++.... .
T Consensus 8 ~~~~s~d~~~r~~A~~~L~~-~~~~---~~~~~---~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 8 EKTVSPDRLELEAAQKFLER-AAVE---NLPTF---LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp HGGGCSCHHHHHHHHHHHHH-HHHH---HHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHH-HHhc---ChhhH---HHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 44567788899999998855 4321 11233 3334444545 468899988888887763210 0
Q ss_pred -hhh-hhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHHH
Q 000159 86 -DAG-RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQAL 156 (2013)
Q Consensus 86 -~~~-~~~~~v~~~LveK~l~-~k~~~k~~A~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~L~~~l 156 (2013)
... .....+-..|++- +. ..+.+ ..+..++-.++..+.+ ..+++.|...+.+. ++.++..++.+|..++
T Consensus 81 ~~l~~~~~~~ik~~ll~~-l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHT-LGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp HTSCHHHHHHHHHHHHHH-TTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH-hCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 011 1123344445553 44 45566 6677777766655432 46788888888888 9999999999999998
Q ss_pred HHhCCCCc--ChhHHHHhhhhhhcCC--ChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCC
Q 000159 157 SEFGAKII--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTAR 232 (2013)
Q Consensus 157 ~~fG~~~i--~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~ 232 (2013)
..++...+ ....+++.+...+.+. +..||..|...+..+..+++.. +.... ....+
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~~-------~~~~i------------ 218 (876)
T 1qgr_A 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-FDKES-------ERHFI------------ 218 (876)
T ss_dssp HHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH-HTSHH-------HHHHH------------
T ss_pred HhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhHH-------HHHHH------------
Confidence 87653211 2356788888888887 6899999998888877665531 10000 00000
Q ss_pred CCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHH
Q 000159 233 PTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312 (2013)
Q Consensus 233 P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l 312 (2013)
+ +.+.+.+.+.+|+.|..+++.|..+
T Consensus 219 -------------------------------------------------l-----~~l~~~~~~~~~~vr~~a~~~l~~l 244 (876)
T 1qgr_A 219 -------------------------------------------------M-----QVVCEATQCPDTRVRVAALQNLVKI 244 (876)
T ss_dssp -------------------------------------------------H-----HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------H-----HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 0 0111122344577888899988887
Q ss_pred hc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh------------------hc---chhhhHhHHH
Q 000159 313 AS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR------------------TH---FSGSSRFLLP 369 (2013)
Q Consensus 313 ~~-~pki~~~~~~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~------------------~~---f~~~~~~llp 369 (2013)
+. .++.....+. .++..+...+.|.+..|+..|+.++..+++... .. ..++...++|
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 324 (876)
T 1qgr_A 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (876)
T ss_dssp HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhH
Confidence 74 4433322234 677777777888888999999999999887531 11 1245688999
Q ss_pred HHHHHhc-------cCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000159 370 VLLEKLK-------EKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (2013)
Q Consensus 370 ~LL~klk-------dkk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (2013)
.++..+. |....+|.++..++..+... +..-++.+++.+...+++.+|.+|..++..|..+.....+..+.+
T Consensus 325 ~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~ 404 (876)
T 1qgr_A 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999986 34567999999999999876 111245677777788889999999999999988776665445556
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchh-HHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCC
Q 000159 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSG 520 (2013)
Q Consensus 442 ~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~-~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~ 520 (2013)
+++.++|.+..++.|.++.||.+|..+++.+...++... ..+++.
T Consensus 405 ~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~---------------------------------- 450 (876)
T 1qgr_A 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA---------------------------------- 450 (876)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH----------------------------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH----------------------------------
Confidence 788999999999999999999999999998887765320 000100
Q ss_pred CCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhc
Q 000159 521 GSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600 (2013)
Q Consensus 521 ~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~ 600 (2013)
.+
T Consensus 451 ------------------------------------------------------------------------~~------ 452 (876)
T 1qgr_A 451 ------------------------------------------------------------------------PL------ 452 (876)
T ss_dssp ------------------------------------------------------------------------HH------
T ss_pred ------------------------------------------------------------------------HH------
Confidence 00
Q ss_pred cCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhcc---------------CcchHHHHHHHHHhcCCC-CcccHHHHHHHHH
Q 000159 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ---------------NLDQSVEILVRLVCMLPG-WSEKNVQVQQQVI 664 (2013)
Q Consensus 601 ~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~---------------~~~~~~~~lv~~L~~~pg-l~DsN~qV~~~~L 664 (2013)
-+.++..|.+. ++.|..++..|..++...+ ...++.+.++..|...-. ..+.+..+...++
T Consensus 453 --l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~ 529 (876)
T 1qgr_A 453 --LQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAY 529 (876)
T ss_dssp --HHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHH
T ss_pred --HHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHH
Confidence 02333444442 5666666666666665422 123344444444421100 1111334667899
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHhhhcC-----------------hhhhHHHHHHHHHHHhhhC-hh------HHHH
Q 000159 665 EVINYLAATATKFPKKCVVLCLLGISERVAD-----------------IKTRAHAMKCLTTFSEAVG-PG------FIFE 720 (2013)
Q Consensus 665 e~l~~l~~~~~~~~~~~~~~il~~LveKlgD-----------------~K~r~~a~e~L~~l~e~~~-~~------~Vl~ 720 (2013)
+++..++...+.-....+..+++.+++.+.+ ..++..+..+|..++...+ .. .+++
T Consensus 530 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 609 (876)
T 1qgr_A 530 ESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMA 609 (876)
T ss_dssp HHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHH
T ss_pred HHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHH
Confidence 9999999877654455677888888877653 2346677888888888777 32 2444
Q ss_pred HHHHHhhhCCC--hhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCC-cHhHHHHHHHHHHHHHHhhChhHHh
Q 000159 721 RLYKIMKDHKN--PKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSS-AAATRNATIKLLGALHKFVGPDIKG 796 (2013)
Q Consensus 721 ~L~~~l~~~Kn--pKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~~-n~~VR~aA~~ll~~Ly~~~G~~l~~ 796 (2013)
.++..+ .+.+ +.++..++.++..++..+|....+ +..+++.+... +.+. ++.||.+|..+++.|...+|+.+.+
T Consensus 610 ~l~~~l-~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 687 (876)
T 1qgr_A 610 SLLRMF-QSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG-LKNYAEYQVCLAAVGLVGDLCRALQSNIIP 687 (876)
T ss_dssp HHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH-HHHCTTHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHH-HhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555443 3332 578999999999999887754222 45677777776 8876 8999999999999999999987777
Q ss_pred hhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHH
Q 000159 797 FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEA 876 (2013)
Q Consensus 797 ~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~ 876 (2013)
|+..+-+.+++.+.. .+.++.+|..++..
T Consensus 688 ~~~~i~~~l~~~l~~---------------------------------------------------~~~~~~~~~~~~~~ 716 (876)
T 1qgr_A 688 FCDEVMQLLLENLGN---------------------------------------------------ENVHRSVKPQILSV 716 (876)
T ss_dssp HHHHHHHHHHHHHTC---------------------------------------------------TTSCGGGHHHHHHH
T ss_pred hHHHHHHHHHHHhCC---------------------------------------------------ccccHHhhHHHHHH
Confidence 665544444333211 01234567778888
Q ss_pred HHHHHHhccccCCCCChhhHHHHHHhcccch-----------hHHHHHHHHHHHHHHHHHhCh----------hhHhhhh
Q 000159 877 VNKILEEANKRIQPAGTGELFGGLRGRLYDS-----------NKNLVMATLITLGAVASAMGP----------AVEKSSK 935 (2013)
Q Consensus 877 l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds-----------N~~V~~~Al~~l~~La~alg~----------~~~~~~~ 935 (2013)
+..++...+..+.+. +..+++.|...+.+. ...++..++.++..++..+|. .|.+|+.
T Consensus 717 l~~i~~~~g~~~~~~-l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 795 (876)
T 1qgr_A 717 FGDIALAIGGEFKKY-LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVE 795 (876)
T ss_dssp HHHHHHHHGGGGGGG-HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHH
T ss_pred HHHHHHHhchhHHHH-HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHH
Confidence 888887544444443 467777777766533 237888899999999988864 5788888
Q ss_pred hHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc--------hhhHHHHHH-HHhcCCCChhhHHHHHHHHH
Q 000159 936 GVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL--------DKMVPYVTT-ALTDAKLGAEGRKDLFDWLS 998 (2013)
Q Consensus 936 ~llp~ll~~L~D~--k~~Vr~aa~~aL~~i~~~~gl--------~~ll~~l~~-~L~~~k~~p~~R~~~l~~L~ 998 (2013)
.+++.+...+.|. ...||.+|..||+.++..+|- +.+++.+.. .+.++ ++.+|..+...+.
T Consensus 796 ~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~--~~~~r~~a~~a~~ 867 (876)
T 1qgr_A 796 FILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSK--TNKAKTLARWATK 867 (876)
T ss_dssp HHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcC--CHhHHHHHHHHHH
Confidence 8887777777777 789999999999999999875 234555666 77665 5788876554443
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-20 Score=246.62 Aligned_cols=561 Identities=13% Similarity=0.120 Sum_probs=381.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhhh----HHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHH
Q 000159 95 CDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDV----FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRIL 170 (2013)
Q Consensus 95 ~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~~~----v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il 170 (2013)
+..|++..-+..+.+|..|...+-.++....++. ++..|.... ..++.++..+...|..+...+|.. -....++
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~-~~~~~ll 89 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP-EYVHCLL 89 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG-GGGGGGH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH-HHHHHHH
Confidence 4556666444677888888777666554333333 333343333 566777766666665444433331 1134567
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhcc
Q 000159 171 KMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 250 (2013)
Q Consensus 171 ~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~ 250 (2013)
+.|..++.+.+..||+.|...+..+...+++..+.. .+-
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~----~l~------------------------------------- 128 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA----HFV------------------------------------- 128 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHH----THH-------------------------------------
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHH----HHH-------------------------------------
Confidence 777777788888888888877777765554311000 000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHH
Q 000159 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTL 330 (2013)
Q Consensus 251 ~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L 330 (2013)
+-+.....+.+|..|..|...+..+... ........+++.|
T Consensus 129 -------------------------------------~~l~~l~~~~~~~~R~~a~~~l~~~~~~--~~~~~~~~l~~~l 169 (588)
T 1b3u_A 129 -------------------------------------PLVKRLAGGDWFTSRTSACGLFSVCYPR--VSSAVKAELRQYF 169 (588)
T ss_dssp -------------------------------------HHHHHHHTCSSHHHHHHHGGGHHHHTTT--SCHHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHhcCCCcHHHHHHHHHHHHHHHh--cCHHHHHHHHHHH
Confidence 0111112344577777777766666532 1112235778888
Q ss_pred HHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh----HhHHH
Q 000159 331 KKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL----VDVVE 406 (2013)
Q Consensus 331 ~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l----~~il~ 406 (2013)
...+.|.+..|+..|+.+++.++..++.. .+...++|.++..+.|....||.++..+|..+... .+. +.+++
T Consensus 170 ~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~ 245 (588)
T 1b3u_A 170 RNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL--LPQEDLEALVMP 245 (588)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH--SCHHHHHHHTHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh--CCHHHHHHHHHH
Confidence 88889999999999999999999887763 45678999999999999999999999999999876 333 34677
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHH-HHH
Q 000159 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE-RSI 485 (2013)
Q Consensus 407 ~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~-~~l 485 (2013)
.+...+++++|.+|..++..|..+....+... +.+.++|.+..++.|.+++||.+|..+|+.+...+|..... .++
T Consensus 246 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 322 (588)
T 1b3u_A 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEI---TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM 322 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH---HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHhCccc---chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHH
Confidence 77778889999999999999998877654432 24678999999999999999999999999888777653100 000
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 486 EKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAK 565 (2013)
Q Consensus 486 ~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~ 565 (2013)
+.
T Consensus 323 ~~------------------------------------------------------------------------------ 324 (588)
T 1b3u_A 323 SQ------------------------------------------------------------------------------ 324 (588)
T ss_dssp HT------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 000159 566 KDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRL 645 (2013)
Q Consensus 566 ~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~ 645 (2013)
+.+.+...+.+.+|+.|..++..|..+....+... ..+.++..
T Consensus 325 ------------------------------------l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~p~ 367 (588)
T 1b3u_A 325 ------------------------------------ILPCIKELVSDANQHVKSALASVIMGLSPILGKDN-TIEHLLPL 367 (588)
T ss_dssp ------------------------------------HHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH-HHHHTHHH
T ss_pred ------------------------------------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH-HHHHHHHH
Confidence 01233445677788888887776665544322100 01111111
Q ss_pred HhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhCh----hHHHHH
Q 000159 646 VCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGP----GFIFER 721 (2013)
Q Consensus 646 L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~----~~Vl~~ 721 (2013)
|.. .++|.+..|...+++.+..+.. ..+. +.+++.
T Consensus 368 l~~--~l~d~~~~Vr~~a~~~l~~l~~---------------------------------------~~~~~~~~~~~lp~ 406 (588)
T 1b3u_A 368 FLA--QLKDECPEVRLNIISNLDCVNE---------------------------------------VIGIRQLSQSLLPA 406 (588)
T ss_dssp HHH--HHTCSCHHHHHHHHTTCHHHHH---------------------------------------HSCHHHHHHHHHHH
T ss_pred HHH--HhCCCchHHHHHHHHHHHHHHH---------------------------------------hcCHHHHHHHHHHH
Confidence 110 1234444555555554444433 2222 123444
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhc
Q 000159 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 801 (2013)
Q Consensus 722 L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~l 801 (2013)
+...+ .+++|++|..++.+|..+...+|...+ ...+++.+..+ +.+.++.||.+|..+++.+...+|+.. ++..
T Consensus 407 l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~- 480 (588)
T 1b3u_A 407 IVELA-EDAKWRVRLAIIEYMPLLAGQLGVEFF-DEKLNSLCMAW-LVDHVYAIREAATSNLKKLVEKFGKEW--AHAT- 480 (588)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHHCGGGC-CHHHHHHHHHG-GGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHH-
T ss_pred HHHHh-cCCCchHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHhCchh--HHHH-
Confidence 44433 678999999999999999998887533 35688888887 999999999999999999998888642 1111
Q ss_pred cHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHH
Q 000159 802 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL 881 (2013)
Q Consensus 802 kp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il 881 (2013)
+.+.+...+.|.+|.+|..+++.+..+.
T Consensus 481 ----------------------------------------------------llp~l~~~~~~~~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 481 ----------------------------------------------------IIPKVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp ----------------------------------------------------THHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 2233444556789999999999999988
Q ss_pred HhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000159 882 EEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961 (2013)
Q Consensus 882 ~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~ 961 (2013)
...+... ....+++.|...+.|.+..|+..++.+++.++..+|..+.. ..++|.+...+.|.+..||..|..++.
T Consensus 509 ~~~~~~~---~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~~~p~l~~l~~d~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 509 EVCGQDI---TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVKYFAQEALT 583 (588)
T ss_dssp HHHHHHH---HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH--HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HhcCHHH---HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH--HHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 6432111 23678889999999999999999999999999999987633 578888888889999999999999987
Q ss_pred HH
Q 000159 962 AW 963 (2013)
Q Consensus 962 ~i 963 (2013)
.+
T Consensus 584 ~l 585 (588)
T 1b3u_A 584 VL 585 (588)
T ss_dssp HT
T ss_pred Hh
Confidence 65
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-22 Score=230.30 Aligned_cols=218 Identities=19% Similarity=0.244 Sum_probs=193.5
Q ss_pred HHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHH
Q 000159 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (2013)
Q Consensus 592 ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~-~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l 670 (2013)
+++...+...+++++..+|+|++||.|++|++.|.+.+.+. .......+.+++|+.. ++.|+|++|...+|+++..+
T Consensus 37 ~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~l--r~~d~N~~v~~~~L~~L~~l 114 (266)
T 2of3_A 37 SQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL--RFFETNPAALIKVLELCKVI 114 (266)
T ss_dssp HHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHH--HTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH
Confidence 45666777889999999999999999999999999998763 3334456788999864 57899999999999999998
Q ss_pred HHHc----CCCchhhHHHHHHHHHhhhcChh--hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000159 671 AATA----TKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVS 744 (2013)
Q Consensus 671 ~~~~----~~~~~~~~~~il~~LveKlgD~K--~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~ 744 (2013)
+..+ ..++...+..++|.|++|+||+| +|+.++++|..+++.++|..+++.++.++ .+||||+|.+|+.++..
T Consensus 115 ~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 115 VELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHH
Confidence 8765 35677778999999999999986 89999999999999999999999999975 89999999999999999
Q ss_pred HHHHhCCCCCChhhHH---HHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhC
Q 000159 745 AVEDFGVSHLKLKDLI---DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (2013)
Q Consensus 745 li~~fG~~~l~~k~li---~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~ 816 (2013)
+++.||.. . ...+ +.+.++ ++|+|++||++|+++++++|+++|+.++.+++++++..++.|++.|...
T Consensus 194 li~~~G~~--~-~~~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 194 YITNAGIS--P-LKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHHCSG--G-GGGGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC--c-cccccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 99999986 2 3356 777787 9999999999999999999999999999999999999999999999764
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=241.83 Aligned_cols=218 Identities=17% Similarity=0.220 Sum_probs=164.5
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHH------HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC---
Q 000159 606 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI------LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK--- 676 (2013)
Q Consensus 606 l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~------lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~--- 676 (2013)
+.++|.|++||.|++|+++|.+.+..........+. +...|.+ .++|+|++|++.+++++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk--~l~DsN~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQ--YITDSNVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHH--HTTCSSHHHHHHHHHHHHHHHTTCC---C
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 668999999999999999999999774322111111 1222221 36799999999999999999886542
Q ss_pred ---CchhhHHHHHHHHHhh-hcChh--hhHHHHHHHHHHHhhhCh-hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHh
Q 000159 677 ---FPKKCVVLCLLGISER-VADIK--TRAHAMKCLTTFSEAVGP-GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF 749 (2013)
Q Consensus 677 ---~~~~~~~~il~~LveK-lgD~K--~r~~a~e~L~~l~e~~~~-~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~f 749 (2013)
+...++..++|.|++| +||.| ++..+.++|..+++...+ ..+++.++.++ ++||||++.+++.||..++.+|
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHh
Confidence 1234678899999999 78865 789999999999997654 66777777775 8999999999999999999999
Q ss_pred CCCCCChhh----HHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhH----HhhhhhccHHHHHHHHHHHhhCCCCCC
Q 000159 750 GVSHLKLKD----LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI----KGFLADVKPALLSALDAEYEKNPFEGT 821 (2013)
Q Consensus 750 G~~~l~~k~----li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l----~~~L~~lkp~ll~~Le~ef~k~~~~~~ 821 (2013)
|...++++. +++.+.++ ++|+|++||++|+.++++||+++|+.+ ..|+++++|++++.|+++|+|+.++++
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~~~ 249 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDEPS 249 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC---
T ss_pred CCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCCCC
Confidence 998888665 44456676 999999999999999999999999865 467899999999999999999988766
Q ss_pred CCCccc
Q 000159 822 VVPKKT 827 (2013)
Q Consensus 822 p~p~R~ 827 (2013)
|.+.+.
T Consensus 250 ~~~~~~ 255 (278)
T 4ffb_C 250 SSKMLF 255 (278)
T ss_dssp ----CC
T ss_pred CCCcch
Confidence 665554
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.4e-11 Score=150.36 Aligned_cols=378 Identities=12% Similarity=0.070 Sum_probs=270.2
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc----------
Q 000159 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---------- 674 (2013)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~---------- 674 (2013)
.++.++.+.+-..|.+|-+.|.++-.... ......++..+.. .+.+..|++.+.-++..++...
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--~~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENL--PTFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 46677888899999999999987544211 1233455555542 2346788888888888876421
Q ss_pred --CCCchhhHHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhChh----HHHHHHHHHhhhCC--ChhHHHHHHHHHHH
Q 000159 675 --TKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHK--NPKVLSEGILWMVS 744 (2013)
Q Consensus 675 --~~~~~~~~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~----~Vl~~L~~~l~~~K--npKv~~~~l~~L~~ 744 (2013)
..+.......+-..|++.+.+ .++ ..+..++..++....++ -+++.++..+ .+. ++.++..++.+|..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 234444445566667777766 467 77888899888876553 3666676665 455 89999999999999
Q ss_pred HHHHhCCCCC--ChhhHHHHHHhcCCCCC--cHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCC
Q 000159 745 AVEDFGVSHL--KLKDLIDFCKDTGLQSS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (2013)
Q Consensus 745 li~~fG~~~l--~~k~li~~l~~~gL~~~--n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~ 820 (2013)
+++++....+ ....+++.+..+ +.+. ++.||.+|.++++.+..+++..+.. . .+.
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~-------~-------~~~------ 215 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDK-------E-------SER------ 215 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS-------H-------HHH------
T ss_pred HHHhCCchhhHhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh-------h-------HHH------
Confidence 9998743222 235677877776 8888 7999999999988764332211100 0 000
Q ss_pred CCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChh-hHHHH
Q 000159 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGG 899 (2013)
Q Consensus 821 ~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~-eL~~~ 899 (2013)
..+.+.+...+.+.++.+|..+++.+..++......+.+. +. ++++.
T Consensus 216 -------------------------------~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~ 263 (462)
T 1ibr_B 216 -------------------------------HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAI 263 (462)
T ss_dssp -------------------------------HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHH
T ss_pred -------------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 0012233344567789999999999999998654556655 47 89998
Q ss_pred HHhcccchhHHHHHHHHHHHHHHHHHh---------------------ChhhHhhhhhHHHHHHHHhCCC-------cHH
Q 000159 900 LRGRLYDSNKNLVMATLITLGAVASAM---------------------GPAVEKSSKGVLSDILKCLGDN-------KKH 951 (2013)
Q Consensus 900 L~~rL~DsN~~V~~~Al~~l~~La~al---------------------g~~~~~~~~~llp~ll~~L~D~-------k~~ 951 (2013)
+...+.|.+..|+..|+..+..++... ..-+.+|+..++|.++..+.+. ...
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888889999999999999999998763 1234567788999999998643 347
Q ss_pred HHHHHHHHHHHHHHhcCchhhHH----HHHHHHhcCCCChhhHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCC
Q 000159 952 MRECTLTVLDAWLAAVHLDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDK 1024 (2013)
Q Consensus 952 Vr~aa~~aL~~i~~~~gl~~ll~----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~ 1024 (2013)
+|.+|..+|..++..+| +.+++ .+...|.+. ++..|..++..+......... .+.+..+++.++.+|.|+
T Consensus 344 ~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 45544 444555555 588999999988876654431 234566777799999999
Q ss_pred ChHHHHHHHHHHHHHHHHcChh
Q 000159 1025 SSDVRKAAEACIVEILRAGGQE 1046 (2013)
Q Consensus 1025 ~~dVR~aA~~~L~~l~~~~G~~ 1046 (2013)
++.||.+|..+|..+...+|..
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988763
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-10 Score=148.83 Aligned_cols=381 Identities=13% Similarity=0.090 Sum_probs=264.3
Q ss_pred hhhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCC--cHHHHHHHHHHHHHHHHHhch---------
Q 000159 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS--NAPVQDKALDALIAYLKAADA--------- 85 (2013)
Q Consensus 17 ~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds--N~~vqe~~leal~~~v~~~~~--------- 85 (2013)
-+.+.+.+-..|.+|-+.|.+ +... +.|.|. ..+...+.++ +..+...|...|..+++....
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~-~~~~---~~~~~~---~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLER-AAVE---NLPTFL---VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHH-HHHH---HHHHHH---HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHH-HHhh---ChHHHH---HHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 345667788899999999876 4321 123443 3333444443 788999998888888743210
Q ss_pred --hhh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHHH
Q 000159 86 --DAG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQAL 156 (2013)
Q Consensus 86 --~~~-~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~L~~~l 156 (2013)
... .....|-..|++.+....+.+ ..+..++-.++..+.+ ..+++.|...+.+. ++.++.+++.+|..+.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 011 112345555666543345666 6677777666655433 36788888888887 8999999999999999
Q ss_pred HHhCCCCcC--hhHHHHhhhhhhcCC--ChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCC
Q 000159 157 SEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTAR 232 (2013)
Q Consensus 157 ~~fG~~~i~--~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~ 232 (2013)
+.+....+. ...+++.+..++.+. +..||.+|...+..+..++++ .. .. .. +.+
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-----~~-~~---~~-------~~~------ 216 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA-----NF-DK---ES-------ERH------ 216 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH-----HH-TS---HH-------HHH------
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-----hh-hh---hH-------HHH------
Confidence 887433222 356889999999998 799999998876665433221 11 00 00 000
Q ss_pred CCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHH
Q 000159 233 PTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312 (2013)
Q Consensus 233 P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l 312 (2013)
| ++ ..+.+.+.+.++..|..+++.|..+
T Consensus 217 ----------------------------------------~-------l~-----~~l~~~~~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 217 ----------------------------------------F-------IM-----QVVCEATQCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp ----------------------------------------H-------HH-----HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----------------------------------------H-------HH-----HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 0 00 0111223455677888999999888
Q ss_pred hc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh---------------------hhcchhhhHhHHH
Q 000159 313 AS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGL---------------------RTHFSGSSRFLLP 369 (2013)
Q Consensus 313 ~~-~pki~~~~~~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L---------------------~~~f~~~~~~llp 369 (2013)
+. .++.....+. .++..+...+.|.+..|+..|+..+..++... ..-+.+|...++|
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 324 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccH
Confidence 73 4443333455 78888888888999999999999999998764 1123467789999
Q ss_pred HHHHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000159 370 VLLEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (2013)
Q Consensus 370 ~LL~klkd-------kk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (2013)
.+++.+.+ ....+|.++..+|..+... +..-++.+++.+...+++.+|.+|..++..|..+...+....+..
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 404 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 99998854 3457899999999999886 111234566777778889999999999999998877655444556
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 442 ~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
+++.++|.+..++.|+++.||.+|+.+++.+...++..
T Consensus 405 ~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc
Confidence 67899999999999999999999999999999998863
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.26 E-value=5.1e-09 Score=138.46 Aligned_cols=479 Identities=12% Similarity=0.159 Sum_probs=294.0
Q ss_pred chhhhHhHHHHHHHHhccCcHHHH-HHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000159 360 FSGSSRFLLPVLLEKLKEKKPTVA-ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (2013)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~-~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (2013)
|..+.+.-+..+-+.|...+...+ +++...+. ++..| ...+..+..++..++++++.+|+-+..++..+....+
T Consensus 7 f~~~~~~e~~~i~~~L~~~~~~~k~~~~~kli~-~~~~G-~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~--- 81 (591)
T 2vgl_B 7 FTTNKKGEIFELKAELNNEKKEKRKEAVKKVIA-AMTVG-KDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP--- 81 (591)
T ss_dssp TCCCSSSHHHHHHHHTTSSCHHHHHHHHHHHHH-HHHTT-CCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH---
T ss_pred cccccCChHHHHHHHHcCCCHHHHHHHHHHHHH-HHHCC-CChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc---
Confidence 443434455566666766665443 33444443 33222 4556677788888889999999888888877665422
Q ss_pred HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccC
Q 000159 439 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQT 518 (2013)
Q Consensus 439 l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~ 518 (2013)
..+-.++..+.+.++|+++.||..|..+++.+ +...+.+
T Consensus 82 --e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i----~~~~~~~----------------------------------- 120 (591)
T 2vgl_B 82 --DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI----RVDKITE----------------------------------- 120 (591)
T ss_dssp --HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC----CSGGGHH-----------------------------------
T ss_pred --hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC----ChHHHHH-----------------------------------
Confidence 12244567888889999999998887666433 1111110
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHh
Q 000159 519 SGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598 (2013)
Q Consensus 519 ~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~ 598 (2013)
T Consensus 121 -------------------------------------------------------------------------------- 120 (591)
T 2vgl_B 121 -------------------------------------------------------------------------------- 120 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC-
Q 000159 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF- 677 (2013)
Q Consensus 599 ~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~- 677 (2013)
.+.+.+...|.|.++-.|..|+..+..++....+.... +.++..|.. -+.|.|..|+..++.++..+....++.
T Consensus 121 --~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~--lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 121 --YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-QGFLDSLRD--LIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp --HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHH--TTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred --HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-ccHHHHHHH--HhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 01134556667777778888888888777643332111 123333322 257888888888888888776643321
Q ss_pred chhhHHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhC--hhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhC--C
Q 000159 678 PKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG--V 751 (2013)
Q Consensus 678 ~~~~~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~--~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG--~ 751 (2013)
.-......+..|+..+.+ +-.+-...++|..++.... ...+++.+... ..+.|+.|+.+|+..+..+....+ .
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~-l~~~~~~V~~ea~~~i~~l~~~~~~~~ 274 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPR-LSHANSAVVLSAVKVLMKFLELLPKDS 274 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTC-SCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHhhccCCCH
Confidence 001122233444444332 2233333333332221100 12344444444 368899999999988876543221 1
Q ss_pred CCCC--hhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCccccc
Q 000159 752 SHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (2013)
Q Consensus 752 ~~l~--~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r 829 (2013)
..+. ...+...+..+ .+++++||..|...++.+.......+..
T Consensus 275 ~~~~~~~~~~~~~L~~L--~~~d~~vr~~aL~~l~~i~~~~p~~~~~--------------------------------- 319 (591)
T 2vgl_B 275 DYYNMLLKKLAPPLVTL--LSGEPEVQYVALRNINLIVQKRPEILKQ--------------------------------- 319 (591)
T ss_dssp BSHHHHHHHTHHHHHHH--TTSCHHHHHHHHHHHHHHHHHCCSTTTT---------------------------------
T ss_pred HHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHHhChHHHHH---------------------------------
Confidence 1111 12333333343 4588999999999988775432110000
Q ss_pred CccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhH
Q 000159 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909 (2013)
Q Consensus 830 ~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~ 909 (2013)
. +. .|+-..+| +|.+|.++++.+..+..+ ....+++..|...+.|.+.
T Consensus 320 -------------------~----~~-~~~~~~~d-~~~Ir~~al~~L~~l~~~-------~nv~~iv~~L~~~l~~~d~ 367 (591)
T 2vgl_B 320 -------------------E----IK-VFFVKYND-PIYVKLEKLDIMIRLASQ-------ANIAQVLAELKEYATEVDV 367 (591)
T ss_dssp -------------------C----TT-TTSCCTTS-CHHHHHHHHHHHHHTCCS-------STHHHHHHHHHHHTTSSCH
T ss_pred -------------------H----HH-hheeccCC-hHHHHHHHHHHHHHHCCh-------hhHHHHHHHHHHHHhcCCH
Confidence 0 00 12212233 499999999888776532 2257888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCCh
Q 000159 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 987 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~p 987 (2013)
.++..++..|+.++... .+....+++.++..+.+....|+..+..++..+++..+ ...+++.+...+.+-. .|
T Consensus 368 ~~r~~~v~aI~~la~~~----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~-~~ 442 (591)
T 2vgl_B 368 DFVRKAVRAIGRCAIKV----EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD-EP 442 (591)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC-SH
T ss_pred HHHHHHHHHHHHHHHhC----hhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc-CH
Confidence 99999999999988654 34456778889999999999999999999999988765 2456777777776432 47
Q ss_pred hhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000159 988 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2013)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~ 1045 (2013)
.+|..++ |+..-+... ..+..+.+..++..+.+.++.||..+..++..+....+.
T Consensus 443 ~~~~~~~-wilGey~~~--~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 443 DARAAMI-WIVGEYAER--IDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS 497 (591)
T ss_dssp HHHHHHH-HHHHTTCTT--CTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHH-HHHHccccc--ccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch
Confidence 7765554 543322222 123456777788888899999999999999888877654
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-08 Score=134.41 Aligned_cols=492 Identities=13% Similarity=0.149 Sum_probs=310.0
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
++-+.+.+.+=..|++++..+..+. .+. +...++..+.+.+.+.+..+...+...+..+++.- ...+..+
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~-----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~ 87 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGK-----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMA 87 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTC-----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHH
Confidence 5566678888889999999887654 333 23334444556788999999888888888777641 2235667
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000159 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (2013)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (2013)
+..+.+-+.++++.+|..|..+|..+.. ..-.+.+++.+..++.+.+|.||..++..+.++....+. .+.. ..++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~--~~~~ 162 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVED--QGFL 162 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHH--HHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hccc--ccHH
Confidence 7888889999999999877555543321 112345667788999999999999999999998875443 2211 3588
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch--------hHHHHHhhc---cHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMR--------PLERSIEKL---DDVRRNKLSEMIAGSGGDVATGTSSARV 516 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~--------~~~~~l~~L---d~~~~kki~e~~~~~~~~~~~~~~~~~~ 516 (2013)
+.+..+|+|.++.||.+|..+|..++..-++. .+..++..| ++-.+-++-+.+...
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l------------- 229 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY------------- 229 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh-------------
Confidence 99999999999999999999999887654321 123333222 222222222222110
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHH
Q 000159 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (2013)
Q Consensus 517 ~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~ 596 (2013)
.| ..+++...
T Consensus 230 -----------------------------~~-----------------------------------------~~~~~~~~ 239 (591)
T 2vgl_B 230 -----------------------------NP-----------------------------------------KDDREAQS 239 (591)
T ss_dssp -----------------------------CC-----------------------------------------CSHHHHHH
T ss_pred -----------------------------CC-----------------------------------------CChHHHHH
Confidence 00 01122222
Q ss_pred HhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhc--c-Ccch-HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHH
Q 000159 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV--Q-NLDQ-SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 672 (2013)
Q Consensus 597 ~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~--~-~~~~-~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~ 672 (2013)
.+ +.+...|.+.++..|.+|+..+..+.... + +... ..+.+...|.. +.+++..|+-.++..+..++.
T Consensus 240 ~l-----~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~---L~~~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 240 IC-----ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT---LLSGEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp HH-----HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH---HTTSCHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH---HhcCCccHHHHHHHHHHHHHH
Confidence 22 45566789999999999999888654321 1 1110 11112221111 112344578889999999988
Q ss_pred HcCCCchhhHHHHHHHHHhhhcC-hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC
Q 000159 673 TATKFPKKCVVLCLLGISERVAD-IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (2013)
Q Consensus 673 ~~~~~~~~~~~~il~~LveKlgD-~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~ 751 (2013)
..++....... .++-...| ..+|..+.++|..++.....+.++.++..++ .+.++.++.+++.+|..+...|..
T Consensus 312 ~~p~~~~~~~~----~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l-~~~d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 312 KRPEILKQEIK----VFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYA-TEVDVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HCCSTTTTCTT----TTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred hChHHHHHHHH----hheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhChh
Confidence 76654322211 12222233 3578888889988887777778888888876 567899999999999998876542
Q ss_pred CCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCc
Q 000159 752 SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (2013)
Q Consensus 752 ~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~ 831 (2013)
....+++.+..+ +.+.+..|+..++..+..+.+..... .
T Consensus 387 ---~~~~~v~~Ll~l-l~~~~~~v~~e~i~~l~~ii~~~p~~--------~----------------------------- 425 (591)
T 2vgl_B 387 ---SAERCVSTLLDL-IQTKVNYVVQEAIVVIRDIFRKYPNK--------Y----------------------------- 425 (591)
T ss_dssp ---HHHHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHSCSS--------C-----------------------------
T ss_pred ---HHHHHHHHHHHH-HcccchHHHHHHHHHHHHHHHHCcch--------H-----------------------------
Confidence 234577777777 88888888888877666554321100 0
Q ss_pred cccCCCCCCCCCCCCCcccccccchHHHHhcCC-CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHH
Q 000159 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN 910 (2013)
Q Consensus 832 ~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d-~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~ 910 (2013)
..+...+.+.+.+ .....|..++-.+++.. ..+. + -.+++..|..++.+.+..
T Consensus 426 --------------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~----~~~~-~-~~~~l~~l~~~~~~~~~~ 479 (591)
T 2vgl_B 426 --------------------ESIIATLCENLDSLDEPDARAAMIWIVGEYA----ERID-N-ADELLESFLEGFHDESTQ 479 (591)
T ss_dssp --------------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC----TTCT-T-HHHHHHHHSTTCSSSCHH
T ss_pred --------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHccc----cccc-C-HHHHHHHHHHhhccCCHH
Confidence 0012234444432 34555655555444332 2222 2 367888888888888999
Q ss_pred HHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh-CC-CcHHHHHHHHHHHH
Q 000159 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GD-NKKHMRECTLTVLD 961 (2013)
Q Consensus 911 V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L-~D-~k~~Vr~aa~~aL~ 961 (2013)
|+..++.++..+....... ....+..+++.+ .| .+..||+-|...+.
T Consensus 480 vr~~~l~a~~Kl~~~~p~~----~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 480 VQLTLLTAIVKLFLKKPSE----TQELVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHHHHHHHHHTTCCST----THHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCchH----HHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 9999999888887654322 124555566654 45 56678887755443
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-10 Score=154.06 Aligned_cols=196 Identities=16% Similarity=0.202 Sum_probs=167.2
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh--hhcchhhhHh
Q 000159 290 FWEGVKATKWSERKDAVAELTKLASTKR-IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSRF 366 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~pk-i~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L--~~~f~~~~~~ 366 (2013)
.++.+...+-.+|+++...+..++.+.. ..... ..++..|++.+.|.+.. ..|+.+++.||+.. ...++||.-.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 4455665556788999999998775332 22223 37999999999988766 99999999999655 4589999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000159 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (2013)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (2013)
++|.+|+.++||...|++++..|+++++.. +...+..++|.|+.+|++. .|+.|.+++.++..+.... +..+...++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~ 174 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMP 174 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhcc
Confidence 999999999999999999999999999987 2234567899999999865 5999999999999998876 566778899
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhcc
Q 000159 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (2013)
Q Consensus 445 ~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld 489 (2013)
+++|.+..++.|..++|.++|.+++..++.+++++++++|++.|-
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~ 219 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLI 219 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHH
Confidence 999999999999999999999999999999999999999998764
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.16 E-value=4.9e-09 Score=133.21 Aligned_cols=391 Identities=11% Similarity=0.049 Sum_probs=262.4
Q ss_pred hhhhcCC-----ChhhhccCCChHHHHHHHHHHHHHhhccCCCC-chHHH--hhhhhhHhhhcCC-cHHHHHHHHHHHHH
Q 000159 8 LKEAKKL-----PWEDRLLHKNWKVRNEANIDLAALCDSITDPK-DNRIR--ELGPLFKKTVADS-NAPVQDKALDALIA 78 (2013)
Q Consensus 8 ~~~~~~l-----pl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~-~~~~~--~~~~~~~k~v~Ds-N~~vqe~~leal~~ 78 (2013)
..+|... ++.+.+.+.+...|..|...|.+.+....++. ...+. ...+.+.+++.+. |+.+|..++.+|..
T Consensus 12 ~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~ 91 (450)
T 2jdq_A 12 NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTN 91 (450)
T ss_dssp ----------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3466555 36788999999999999999999875322221 11121 2345555677777 99999999999988
Q ss_pred HHHHhchhhhhhH-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh--h-----hhHHHHHHHHhhc-CChhhHHHHH
Q 000159 79 YLKAADADAGRYA-KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V-----DVFLDVMEKAIKN-KVAKAVVPAI 149 (2013)
Q Consensus 79 ~v~~~~~~~~~~~-~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~--~-----~~v~~~L~~~~~~-KnpKv~~~~l 149 (2013)
+............ ..+++.|++-+-...+.+|+.|..++..+.+... . ..+++.|...+.+ .++.++..++
T Consensus 92 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 92 IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 7753222111111 3477878776434688999999999888876421 1 2456777777774 7899999999
Q ss_pred HHHHHHHHHhCCC--CcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhc
Q 000159 150 DVMFQALSEFGAK--IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV 227 (2013)
Q Consensus 150 ~~L~~~l~~fG~~--~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~ 227 (2013)
.+|..+....+.. ..-+..+++.|..++.+.|..||..+...+..+..... . . .+.+ .
T Consensus 172 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-----~-~--------~~~~---~--- 231 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN-----D-K--------IQAV---I--- 231 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH-----H-H--------HHHH---H---
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc-----H-H--------HHHH---H---
Confidence 9998887543221 11236789999999999999999988766554432110 0 0 0000 0
Q ss_pred CCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHH
Q 000159 228 SGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVA 307 (2013)
Q Consensus 228 ~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~ 307 (2013)
. .+ + + +.+...+.+.+|..|..|+.
T Consensus 232 ------------------------~-~~-------------------------~---i--~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 232 ------------------------D-AG-------------------------V---C--RRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp ------------------------H-TT-------------------------T---H--HHHHHHTTCSCHHHHHHHHH
T ss_pred ------------------------H-cC-------------------------c---H--HHHHHHHCCCchhHHHHHHH
Confidence 0 00 0 1 23555567788999999999
Q ss_pred HHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh-HhHHHHHHHHhccCcHHHHH
Q 000159 308 ELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAE 384 (2013)
Q Consensus 308 ~L~~l~~~pki~~~~~--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~llp~LL~klkdkk~~V~~ 384 (2013)
.|..+..+..-....+ ..+++.|...+.+.+..++..|+.+|+.|+.+-........ ..++|.++..+.+..+.|+.
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~ 336 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 336 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 9998875321000000 13778888889988999999999999999864333323333 37899999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH------HHHhhhhH-----H
Q 000159 385 SLTQTLQAMHKAGC-LNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA------VLKVHKDY-----V 447 (2013)
Q Consensus 385 aa~~aL~ai~~~~~-~~l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~------l~~~l~~l-----~ 447 (2013)
.+..+|..+...+. ... ..+++.|...++++++.+|..++..|..++....... ..++...+ +
T Consensus 337 ~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 416 (450)
T 2jdq_A 337 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 416 (450)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcH
Confidence 99999999886411 001 2367888888999999999999999998876443210 11222333 5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
+.+..++++.+.+||+.|..++..+.
T Consensus 417 ~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 417 DKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 67788889999999999988887654
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.11 E-value=9.2e-09 Score=134.21 Aligned_cols=381 Identities=10% Similarity=0.060 Sum_probs=262.5
Q ss_pred hhhhccCCChHHHHHHHHHHHHHhhccCCCCchHHH--hhhhhhHhhhcCC-cHHHHHHHHHHHHHHHHHhchhhhhhH-
Q 000159 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR--ELGPLFKKTVADS-NAPVQDKALDALIAYLKAADADAGRYA- 91 (2013)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~--~~~~~~~k~v~Ds-N~~vqe~~leal~~~v~~~~~~~~~~~- 91 (2013)
+.+.|.+.+|..|..|...|.+.+....++.-..+. ...+.+..++.+. |+.+|..++.+|..+...... ....+
T Consensus 92 lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~ 170 (530)
T 1wa5_B 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVV 170 (530)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 467788999999999999999987643222111121 2345566778886 999999999998877653211 11111
Q ss_pred -HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh--hh-----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC-
Q 000159 92 -KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE--AV-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK- 162 (2013)
Q Consensus 92 -~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~--~~-----~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~- 162 (2013)
..+++.|+.-.-...+.+|+.|..++..++... .. ..+++.|...+.+.++.++..++.+|..+....+..
T Consensus 171 ~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 245666766533368899999999988887541 11 245677788888889999999999998887543221
Q ss_pred -CcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhh
Q 000159 163 -IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241 (2013)
Q Consensus 163 -~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~ 241 (2013)
..-...+++.|..++.+.|..||..|..++..|.....+ . .+.+ ++
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~-----~---------~~~~---~~---------------- 297 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE-----A---------IQAV---ID---------------- 297 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH-----H---------HHHH---HH----------------
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH-----H---------HHHH---Hh----------------
Confidence 112356899999999999999999988877666532110 0 0000 00
Q ss_pred hHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q 000159 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 321 (2013)
Q Consensus 242 ~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~ 321 (2013)
. .+ + +.+...+.+.+|..|..|+..|..++.+..-...
T Consensus 298 ------------~-------------------------~~---v--~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 335 (530)
T 1wa5_B 298 ------------V-------------------------RI---P--KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335 (530)
T ss_dssp ------------T-------------------------TC---H--HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ------------c-------------------------Cc---H--HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHH
Confidence 0 00 1 2355556778899999999999988743210000
Q ss_pred C-h-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh-HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC
Q 000159 322 D-F-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (2013)
Q Consensus 322 ~-~-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~ 398 (2013)
. + ..+++.|...+.+.+..++..|+.+|+.|+.+-......++ ..++|.|+..+.+....|+..+..+|..+... .
T Consensus 336 ~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~ 414 (530)
T 1wa5_B 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG-G 414 (530)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-C
Confidence 0 0 14677888889988999999999999999864333333332 36889999999999999999999999999875 2
Q ss_pred CC----h-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---------HHHHhh--hhHHHHHHHHhcCCC
Q 000159 399 LN----L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---------AVLKVH--KDYVPICMECLNDGT 458 (2013)
Q Consensus 399 ~~----l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---------~l~~~l--~~l~p~l~k~l~Ds~ 458 (2013)
.+ . ..+++.|+..+.+.++.++..++..|..++...... .+...+ ...++.+..+++|.+
T Consensus 415 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~ 494 (530)
T 1wa5_B 415 LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 494 (530)
T ss_dssp TTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCC
Confidence 11 0 136788888899999999999999999988754321 111111 124778888899999
Q ss_pred HHHHHHHHHHHHHHH
Q 000159 459 PEVRDAAFSVLAAIA 473 (2013)
Q Consensus 459 ~~VR~aA~~al~~l~ 473 (2013)
++|++.|..++..+.
T Consensus 495 ~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 495 DKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHC
Confidence 999998888776554
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.11 E-value=3.3e-05 Score=108.02 Aligned_cols=594 Identities=12% Similarity=0.076 Sum_probs=322.8
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcc----hhhhHhHHH
Q 000159 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHF----SGSSRFLLP 369 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f----~~~~~~llp 369 (2013)
.+.+=..|++|-+.|..+-+.| ++-.+ +...+. +.+..|+..|+.++....+.--..+ ..+++..+-
T Consensus 35 ~~~~~~~r~~A~~~L~~~~~~p-----~~~~~---~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll 106 (963)
T 2x19_B 35 YDPNIENKNLAQKWLMQAQVSP-----QAWHF---SWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLF 106 (963)
T ss_dssp HCCCHHHHHHHHHHHHHHHHST-----THHHH---HHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCH-----HHHHH---HHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHH
Confidence 3467788999999998876654 22222 223343 6678899999999988776432233 233333333
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHhcC--------
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKN-----KVPLVRSLTLNWVTFCIETSS-------- 435 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~-----Knp~vR~~~l~~L~~~l~~~~-------- 435 (2013)
.++.......+.|+..+..++..++.+ .....++++++|...+++ .++..+...+.+|..+.+...
T Consensus 107 ~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~ 186 (963)
T 2x19_B 107 TQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYR 186 (963)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHH
Confidence 333333333588999999999999987 123456899999988865 266677888888887664320
Q ss_pred ----hhHHHHhhhhHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhCchhH--HHHHhhcc---------HHHHHHHHH
Q 000159 436 ----KAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPL--ERSIEKLD---------DVRRNKLSE 498 (2013)
Q Consensus 436 ----~~~l~~~l~~l~p~l~k~l~Ds~~--~VR~aA~~al~~l~~~~Ge~~~--~~~l~~Ld---------~~~~kki~e 498 (2013)
+..+...++.+++.+..++.+... .++.++.+|+..+.. +|.... .++++.+- ....+.+.+
T Consensus 187 r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~ 265 (963)
T 2x19_B 187 KGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQDSELFDSSVEAIVN 265 (963)
T ss_dssp -----CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 111234457778888888876543 489999999977666 554211 22222110 000111111
Q ss_pred HHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCC
Q 000159 499 MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLT 578 (2013)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~ 578 (2013)
.+.+. .++
T Consensus 266 i~~~~------------------------------------------~~~------------------------------ 273 (963)
T 2x19_B 266 AISQP------------------------------------------DAQ------------------------------ 273 (963)
T ss_dssp HHTCT------------------------------------------TGG------------------------------
T ss_pred HHccc------------------------------------------ccc------------------------------
Confidence 11100 000
Q ss_pred CCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHh----c-------cCcchHHHHHHHHHh
Q 000159 579 EAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA----V-------QNLDQSVEILVRLVC 647 (2013)
Q Consensus 579 ~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~----~-------~~~~~~~~~lv~~L~ 647 (2013)
........+-..+..++ +.+...+...+......-.+-+..+.+. . +......+.++.+.
T Consensus 274 -------~~~~~~~~l~~~~~~~~-~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~- 344 (963)
T 2x19_B 274 -------RYVNTLLKLIPLVLGLQ-EQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCT- 344 (963)
T ss_dssp -------GCHHHHHHHHHHHHTTH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-
T ss_pred -------cCHHHHHHHHHHHHhhH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHH-
Confidence 00000001111111110 1111122222221111112222222111 0 00011123333332
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHcCCC-----------chhhHHHHHHHHHhhhcC------------h-----hhh
Q 000159 648 MLPGWSEKNVQVQQQVIEVINYLAATATKF-----------PKKCVVLCLLGISERVAD------------I-----KTR 699 (2013)
Q Consensus 648 ~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~-----------~~~~~~~il~~LveKlgD------------~-----K~r 699 (2013)
..||.-+.+..|...++++|..+++....+ ....+..+++.++.++.- . ..|
T Consensus 345 ~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r 424 (963)
T 2x19_B 345 GIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYR 424 (963)
T ss_dssp TCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHH
Confidence 234321122234667788887777632211 123444556666666521 0 136
Q ss_pred HHHHHHHHHHHhhhChhHHHHHHHHHh---h----hCCChhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCC
Q 000159 700 AHAMKCLTTFSEAVGPGFIFERLYKIM---K----DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSS 771 (2013)
Q Consensus 700 ~~a~e~L~~l~e~~~~~~Vl~~L~~~l---~----~~KnpKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~~ 771 (2013)
..+.++|..++...+. .+++.++..+ . .+.+|+.+.+++.++..+.+......-+ +..+++.+.. +.+.
T Consensus 425 ~~~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~--l~~~ 501 (963)
T 2x19_B 425 VDISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR--ISIS 501 (963)
T ss_dssp HHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG--SCCC
T ss_pred HHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--CCCC
Confidence 6778888888877763 3444444332 2 4568999999999998887654332111 3456665553 5656
Q ss_pred cHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccc
Q 000159 772 AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDIS 851 (2013)
Q Consensus 772 n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs 851 (2013)
++.||..+..+++.+..+++..- .|+..
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~-~~l~~--------------------------------------------------- 529 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHP-VMINS--------------------------------------------------- 529 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCH-HHHTT---------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhCH-HHHHH---------------------------------------------------
Confidence 89999999999998877654321 12211
Q ss_pred cccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc--chhHHHHHHHHHHHHHHHHHhC-h
Q 000159 852 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMG-P 928 (2013)
Q Consensus 852 ~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~--DsN~~V~~~Al~~l~~La~alg-~ 928 (2013)
+.+.++..+.+ -++|..|...+..++..+...+.|. +.+++..|...+. +.....+...+++++.++.+++ .
T Consensus 530 --vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~ 604 (963)
T 2x19_B 530 --VLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE 604 (963)
T ss_dssp --THHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred --HHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence 22344444543 4677888899999998776677777 4888888877775 3456788889999999999887 7
Q ss_pred hhHhhhhhHHHHHHHHhCC-----CcHHHH---HHHHHHHHHHHHhcCchhhHHHHHHHH--hcCCCChhhHHHHHHHHH
Q 000159 929 AVEKSSKGVLSDILKCLGD-----NKKHMR---ECTLTVLDAWLAAVHLDKMVPYVTTAL--TDAKLGAEGRKDLFDWLS 998 (2013)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D-----~k~~Vr---~aa~~aL~~i~~~~gl~~ll~~l~~~L--~~~k~~p~~R~~~l~~L~ 998 (2013)
.+.+|+..+++.++..+.. ..+..+ .....||..+++.++...- ..+...- ...+ .+..+..+...+.
T Consensus 605 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 682 (963)
T 2x19_B 605 EILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH-EDDHEGPELRKLP-VPQGPNPVVVVLQ 682 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC-C----------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc-cccccccccccCC-CCCCCCchHHHHH
Confidence 7889999999998887742 233333 3566777777777652100 0000000 0000 0000011111111
Q ss_pred HHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000159 999 KQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2013)
Q Consensus 999 ~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2013)
. +...+.-++.... .+.+|++.+..++..+...+|.+ +.+++
T Consensus 683 ~----------~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~-~~~~l 724 (963)
T 2x19_B 683 Q----------VFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDD-FAPMV 724 (963)
T ss_dssp H----------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSST-TGGGH
T ss_pred H----------HHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhccc-ccccH
Confidence 1 1222223333322 34588898999999999988865 34455
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-06 Score=122.87 Aligned_cols=701 Identities=11% Similarity=0.071 Sum_probs=374.1
Q ss_pred cCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCCCcCh------hH-HHHhhh
Q 000159 103 LTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAKIIPP------KR-ILKMLP 174 (2013)
Q Consensus 103 l~~k~~~k~~A~~~ll~~~E~~~~~~v~~~L~~~~-~~KnpKv~~~~l~~L~~~l~~fG~~~i~~------k~-il~~l~ 174 (2013)
+++.+..|..|.+.|..+-+ .++ .+..+...+ .+.++.++..|...|...++..-. .++. |. ++..+.
T Consensus 17 ~~~d~~~r~~A~~~L~~~~~--~p~-~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~-~l~~~~~~~ir~~ll~~l~ 92 (971)
T 2x1g_F 17 YRSNSQNQAITHEWLTDAEA--SPQ-AWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWH-EVPPENREELKQKILESIV 92 (971)
T ss_dssp HTSTTTC----CHHHHHTTT--STH-HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGG-GCCGGGHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHc--CHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHh-hCCHHHHHHHHHHHHHHHH
Confidence 34456678888877766533 232 222222222 357889999999999998875322 3432 22 444544
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCC
Q 000159 175 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDV 254 (2013)
Q Consensus 175 ~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~ 254 (2013)
..- ...+.||.....++++|.++..+ .-.. + +.+|-..+..-. .|.
T Consensus 93 ~~~-~~~~~vr~kl~~~la~i~~~~~p-~Wp~-~--------l~~l~~~~~~~~---~~~-------------------- 138 (971)
T 2x1g_F 93 RFA-GGPKIVLNRLCISLGAYIVHMLG-EWPG-A--------IEEVINTFQNQR---MPN-------------------- 138 (971)
T ss_dssp HHT-TSCHHHHHHHHHHHHHHHHHTTC-C---------------HHHHHHHHTC--------------------------
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHHccc-cccH-H--------HHHHHHHHhccc---ccc--------------------
Confidence 443 23689999999999999888764 1111 1 122222221100 000
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 000159 255 GPGPSEESTADVPPEID-EYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKL 333 (2013)
Q Consensus 255 g~~~~~~~~~~~~~~iD-~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~ 333 (2013)
++ +-...-...|+..++ ++.+... .. .|+..+. ..+. .....++..+.+.
T Consensus 139 ---------------~~~~~~~~~~l~iL~~l~-EEi~~~~-~~---~~r~~~~---~~l~------~~~~~vl~ll~~~ 189 (971)
T 2x1g_F 139 ---------------VSADVQLWIMLEVLTAIP-EEAQVIH-TS---VKRVVLR---AEIA------KRVQLVIHTVERY 189 (971)
T ss_dssp ----------------CHHHHHHHHHHHHHHHH-HHHHHCC-CS---SCHHHHH---HHHH------TTHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHhH-HHHhccC-cH---HHHHHHH---HHHH------HHHHHHHHHHHHH
Confidence 00 000000123444443 3322111 11 2332222 1111 1245666666666
Q ss_pred hccc--C------HHHHHHHHHHHHHHHH--HhhhcchhhhHhHHHHHHHHhc----------------cCcHHHHHHHH
Q 000159 334 ITDV--N------IAVAVEAIQAIGNLAR--GLRTHFSGSSRFLLPVLLEKLK----------------EKKPTVAESLT 387 (2013)
Q Consensus 334 l~D~--N------~~V~~~A~~~l~~La~--~L~~~f~~~~~~llp~LL~klk----------------dkk~~V~~aa~ 387 (2013)
+.+. + ..+...+++|+..... .+... ....+++.++. +. +..+.+++++.
T Consensus 190 l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 265 (971)
T 2x1g_F 190 LKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCL 265 (971)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHH
T ss_pred HhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHH
Confidence 6522 1 2688889999998777 34333 44667777777 51 24678999999
Q ss_pred HHHHHHHHhcC-----CChHhHHHHHHH-------HhhcCCh---HHHHHHHHHHHHHHHhcChhH----------HHHh
Q 000159 388 QTLQAMHKAGC-----LNLVDVVEDVKT-------SVKNKVP---LVRSLTLNWVTFCIETSSKAA----------VLKV 442 (2013)
Q Consensus 388 ~aL~ai~~~~~-----~~l~~il~~l~~-------~l~~Knp---~vR~~~l~~L~~~l~~~~~~~----------l~~~ 442 (2013)
+|+..++.... ..+..+++.+.. ++.++.. ......+.++..+.+.+.... ....
T Consensus 266 ~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (971)
T 2x1g_F 266 KTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSIL 345 (971)
T ss_dssp HHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHH
Confidence 99999987411 012334444432 2233343 666677777777665543211 1245
Q ss_pred hhhHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHH-HhC------ch----hHHHHHhhccHHHHHHHHHHHhcCCCC
Q 000159 443 HKDYVPICMECLND-----GTPEVRDAAFSVLAAIAK-SVG------MR----PLERSIEKLDDVRRNKLSEMIAGSGGD 506 (2013)
Q Consensus 443 l~~l~p~l~k~l~D-----s~~~VR~aA~~al~~l~~-~~G------e~----~~~~~l~~Ld~~~~kki~e~~~~~~~~ 506 (2013)
+..+++.+..++.. .+.+|+..+.+....+.. ... .. .+.+++..| +..++.+..-
T Consensus 346 l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-------l~~l~~~~~~- 417 (971)
T 2x1g_F 346 VHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHL-------TRILVRKSEQ- 417 (971)
T ss_dssp HHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH-------HHHHHHHTSC-
T ss_pred HHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH-------HHHHHHHhcC-
Confidence 66778888887743 578899988888777766 321 01 112222222 2222222100
Q ss_pred CCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCC
Q 000159 507 VATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP 586 (2013)
Q Consensus 507 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~ 586 (2013)
+... . ..
T Consensus 418 -p~~~---------------~--------------------------------------------------------~~- 424 (971)
T 2x1g_F 418 -PDEK---------------S--------------------------------------------------------LA- 424 (971)
T ss_dssp -CCTT---------------T--------------------------------------------------------TS-
T ss_pred -CCcc---------------c--------------------------------------------------------cc-
Confidence 0000 0 00
Q ss_pred CCCCHHH-------------HHHHhhccCc--------HHHHhhhcC-----CCHHHHHHHHHHHHHHHHhccC-cchHH
Q 000159 587 SEMSLEE-------------IESRLGSLIP--------ADTVGQLKS-----AVWKERLEAISSLRQQVEAVQN-LDQSV 639 (2013)
Q Consensus 587 ~~~S~ee-------------~e~~~~~~l~--------~~l~~~L~s-----~~Wk~Rl~ale~L~~~v~~~~~-~~~~~ 639 (2013)
..+.+| +-..+..+++ +-+...|.+ .+|+.|.+|+-.+..+.++... .....
T Consensus 425 -~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l 503 (971)
T 2x1g_F 425 -KWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQI 503 (971)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHH
T ss_pred -ccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 000110 0000111222 122233333 7999999999999887665322 12234
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHH
Q 000159 640 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIF 719 (2013)
Q Consensus 640 ~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl 719 (2013)
+.++..+...+. .|.+..|...++.++..+.+-.... ...+..+++.|+..+ |++++..|..++..+++.++..
T Consensus 504 ~~l~~~l~~l~~-~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~~~v~~~A~~al~~l~~~~~~~--- 577 (971)
T 2x1g_F 504 PRLMRVLAEIPY-EKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-NSSMSAQATLGLKELCRDCQLQ--- 577 (971)
T ss_dssp HHHHHHHHHSCT-TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHHHHHhcCc-cccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHh---
Confidence 445554432211 2568889999999888877754432 235666777777666 4667777877777777654321
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCC--CcHhHHHHHHHHHHHHHHhhC-hhHHh
Q 000159 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDIKG 796 (2013)
Q Consensus 720 ~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~--~n~~VR~aA~~ll~~Ly~~~G-~~l~~ 796 (2013)
+.+++ ..++..+..+ +.. .+..+|..+.++++.+...++ .....
T Consensus 578 --l~p~~------------------------------~~ll~~l~~~-l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 578 --LKPYA------------------------------DPLLNACHAS-LNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp --HHHHH------------------------------HHHHHHHHHH-HHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred --ccccH------------------------------HHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 11111 1222222222 332 346788888999999887766 44666
Q ss_pred hhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHH
Q 000159 797 FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEA 876 (2013)
Q Consensus 797 ~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~ 876 (2013)
++..+-+.++..++.-.+.... .++ +-....+.++.
T Consensus 625 ~~~~ll~~l~~~l~~~~~~~~~------------------------------------~~~--------~~~~~~~~l~~ 660 (971)
T 2x1g_F 625 YLDIIVSPCFEELQAICQADSK------------------------------------TPA--------ARIRTIFRLNM 660 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------------------------------------CHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCC------------------------------------Chh--------hHHHHHHHHHH
Confidence 7766666666555543211000 000 00112334445
Q ss_pred HHHHHHhccccCC--------CC----ChhhHHHHHHhcccch--hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHH
Q 000159 877 VNKILEEANKRIQ--------PA----GTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (2013)
Q Consensus 877 l~~il~~a~~~I~--------~~----~~~eL~~~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll 942 (2013)
|..++..-...+. +. ...++++.+...+.+. +..|...++.+++.++..+|..|.+|+..+++.++
T Consensus 661 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~ 740 (971)
T 2x1g_F 661 ISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIV 740 (971)
T ss_dssp HHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 5555542211111 11 1356777777766443 55899999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHhcCch--------hhHHHH----HHHHhcC-----CCChhhHHHHHHHHHHHhccCC
Q 000159 943 KCLGDNKKHMRECTLTVLDAWLAAVHLD--------KMVPYV----TTALTDA-----KLGAEGRKDLFDWLSKQLTGLS 1005 (2013)
Q Consensus 943 ~~L~D~k~~Vr~aa~~aL~~i~~~~gl~--------~ll~~l----~~~L~~~-----k~~p~~R~~~l~~L~~~l~~~~ 1005 (2013)
..+..... ..+...+..++...|-+ .++..+ ...|... ...|+++.+.+.++...+...+
T Consensus 741 ~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p 817 (971)
T 2x1g_F 741 ASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIP 817 (971)
T ss_dssp HHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSG
T ss_pred HHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCc
Confidence 88876432 34778888888877653 222221 1222211 1148899999999998887655
Q ss_pred C----CCC-hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1006 G----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1006 ~----~~~-~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
. ++. +..++..++.+|.-.+.++-+++..++..++..
T Consensus 818 ~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 818 QVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp GGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 3 233 556666667777666666777787777776655
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4e-09 Score=134.07 Aligned_cols=378 Identities=12% Similarity=0.081 Sum_probs=252.9
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHh-ccC-cc------hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEA-VQN-LD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA 674 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~-~~~-~~------~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~ 674 (2013)
-+.+++.|.+.+...|..|+..|..++.. ..+ .. ...+.+++.|. .+.+..|+..++.+|..++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~-----~~~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK-----RKENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCC
Confidence 36788899999999999999999988753 111 11 23445555543 1237788889999988877521
Q ss_pred CCCchhhH-HHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000159 675 TKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNPKVLSEGILWMVS 744 (2013)
Q Consensus 675 ~~~~~~~~-~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~-------~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~ 744 (2013)
.......+ ..++|.++.-+.+ +.+|..|..+|..++..... .-+++.++..+....++.++..++..|..
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 11111111 2467888887765 57899999999998864311 12456666665435789999999999999
Q ss_pred HHHHhCCC-C-CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCC
Q 000159 745 AVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (2013)
Q Consensus 745 li~~fG~~-~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p 822 (2013)
+....+.. . .-+..+++.+..+ +.+.++.||..|..++..|.....+ ....+ -+
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~------------~~~~~----~~------- 232 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPND------------KIQAV----ID------- 232 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSHH------------HHHHH----HH-------
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCcH------------HHHHH----HH-------
Confidence 88543121 1 1135678888888 9999999999999988776532111 00000 00
Q ss_pred CCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000159 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2013)
Q Consensus 823 ~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~ 902 (2013)
..+.+.++..+.+.+|.+|..++..|..+........+.-.-..+++.|..
T Consensus 233 -----------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 283 (450)
T 2jdq_A 233 -----------------------------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH 283 (450)
T ss_dssp -----------------------------TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH
T ss_pred -----------------------------cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHH
Confidence 003356778888999999999999999887531110000000247888889
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhH
Q 000159 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMV 973 (2013)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl--------~~ll 973 (2013)
.+.+.+..++..|+.+++.|+..-........ ..++|.++..|.+....||..|..+|..++..... ..++
T Consensus 284 ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i 363 (450)
T 2jdq_A 284 LLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI 363 (450)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 99999999999999999999853322233333 36899999999999999999999999999876321 2367
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC--------CCChhhh------HHHHHhhcCCCChHHHHHHHHHHHHH
Q 000159 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 974 ~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--------~~~~~~l------l~pl~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
+.+...|.++ ++.+|..++..|...+..... ...+... +..+...+.+.+.+||+.|..++..+
T Consensus 364 ~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 364 KPLCDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441 (450)
T ss_dssp HHHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7788888765 578888887777655432110 0111122 22355566888889999988887765
Q ss_pred H
Q 000159 1040 L 1040 (2013)
Q Consensus 1040 ~ 1040 (2013)
.
T Consensus 442 ~ 442 (450)
T 2jdq_A 442 F 442 (450)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.05 E-value=4.6e-05 Score=106.58 Aligned_cols=353 Identities=12% Similarity=0.117 Sum_probs=202.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHhccC-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 000159 611 KSAVWKERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGI 689 (2013)
Q Consensus 611 ~s~~Wk~Rl~ale~L~~~v~~~~~-~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~L 689 (2013)
.+.+|+.|.+++-.++.+.+.... .......++..+. ++.+.+..|...++.++..+.+-... ....+..+++.+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~---~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~~l 534 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP---RISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLPLV 534 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG---GSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence 346899999999999887766332 2223344555442 45555677777777777665543211 112333344444
Q ss_pred HhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCC
Q 000159 690 SERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGL 768 (2013)
Q Consensus 690 veKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL 768 (2013)
+..+.+ |+|+..++..+..+++..+..-.+ +..++..+..+ +
T Consensus 535 ~~~l~~------------------------------------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~-l 577 (963)
T 2x19_B 535 LHALGN------------------------------------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV-L 577 (963)
T ss_dssp HHHTTC------------------------------------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH-H
T ss_pred HHHhCC------------------------------------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-h
Confidence 444444 444444444444444433221111 23444444443 4
Q ss_pred CC--CcHhHHHHHHHHHHHHHHhhC-hhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000159 769 QS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2013)
Q Consensus 769 ~~--~n~~VR~aA~~ll~~Ly~~~G-~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2013)
.. .+..+|..+.++++.+...++ .....|+..+-+.+...++.-.... .
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-----~----------------------- 629 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI-----P----------------------- 629 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC-----S-----------------------
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC-----C-----------------------
Confidence 32 356788888888888887776 5566777666665555554432100 0
Q ss_pred CCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCC-----------------CC----ChhhHHHHHHhcc
Q 000159 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ-----------------PA----GTGELFGGLRGRL 904 (2013)
Q Consensus 846 pr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~-----------------~~----~~~eL~~~L~~rL 904 (2013)
.++. -+.+...++.+..++........ +. .+..+++.+...+
T Consensus 630 ---------~~~~--------~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 692 (963)
T 2x19_B 630 ---------NPSN--------KLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL 692 (963)
T ss_dssp ---------CHHH--------HHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CHHH--------HHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 0000 01122334444444432111110 00 1234445444444
Q ss_pred cc--hhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhH----H
Q 000159 905 YD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMV----P 974 (2013)
Q Consensus 905 ~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~----~ll----~ 974 (2013)
.. .+..+...++.+++.++..+|..|.+|+..+++.++..+..... ......+..++...+.+ ..+ +
T Consensus 693 ~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~ 769 (963)
T 2x19_B 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFL 769 (963)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHH
T ss_pred HhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 21 24578999999999999999999999999999988887765321 23455666666633321 222 2
Q ss_pred HHH----HHHh-cCCCChhhHHHHHHHHHHHhccCCC----CCC-hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 975 YVT----TALT-DAKLGAEGRKDLFDWLSKQLTGLSG----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 975 ~l~----~~L~-~~k~~p~~R~~~l~~L~~~l~~~~~----~~~-~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
.+. ..+. +....|++|...+..+...+...+. .+. +..++..+..+|.+.+.+|-+++...+..+....+
T Consensus 770 ~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 770 LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 222 2222 2111489999999999888876543 233 56667778888999999999999999998887765
Q ss_pred -hhHHHHHh
Q 000159 1045 -QETIEKNL 1052 (2013)
Q Consensus 1045 -~~~~~~~l 1052 (2013)
.+.+..++
T Consensus 850 ~~~~~~~~~ 858 (963)
T 2x19_B 850 EVESVGKVV 858 (963)
T ss_dssp SSCHHHHHT
T ss_pred ChHHHHHHH
Confidence 33444443
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-09 Score=138.13 Aligned_cols=379 Identities=13% Similarity=0.080 Sum_probs=254.2
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc--c-----hHHHHHHHHHhcCCCCccc-HHHHHHHHHHHHHHHHHHc
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--D-----QSVEILVRLVCMLPGWSEK-NVQVQQQVIEVINYLAATA 674 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~--~-----~~~~~lv~~L~~~pgl~Ds-N~qV~~~~Le~l~~l~~~~ 674 (2013)
-+.+++.|.+.++..|..|+..|..++...... . ...+.++.+ +.+. +..|+..++.+|..++...
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~------L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF------MRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHT------TSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHH------hCCCCCHHHHHHHHHHHHHHhCCC
Confidence 477889999999999999999999887542111 0 112334443 3444 7788888888888776521
Q ss_pred CCCchhhH-HHHHHHHHhhhc--ChhhhHHHHHHHHHHHhhhC--hh-----HHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000159 675 TKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVG--PG-----FIFERLYKIMKDHKNPKVLSEGILWMVS 744 (2013)
Q Consensus 675 ~~~~~~~~-~~il~~LveKlg--D~K~r~~a~e~L~~l~e~~~--~~-----~Vl~~L~~~l~~~KnpKv~~~~l~~L~~ 744 (2013)
+......+ ..+++.|+..+. +..++..|..+|..++.... .. -+++.|+..+ .+.++.++..++..|..
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 11111111 234677776665 45789999999999886421 11 2355566665 56889999999999998
Q ss_pred HHHHhCCCC--CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCC
Q 000159 745 AVEDFGVSH--LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (2013)
Q Consensus 745 li~~fG~~~--l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p 822 (2013)
+....+... .-...+++.+..+ +.+.++.||..|..+|+.|...... ....+ ++
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~------------~~~~~---~~-------- 297 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGPQE------------AIQAV---ID-------- 297 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSCHH------------HHHHH---HH--------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCHH------------HHHHH---Hh--------
Confidence 885431211 1234678888888 9999999999999999877532111 11111 00
Q ss_pred CCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000159 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2013)
Q Consensus 823 ~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~ 902 (2013)
..+.+.++..+.+.+|.+|..|+..|..++.........-.-..+++.|..
T Consensus 298 -----------------------------~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 298 -----------------------------VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp -----------------------------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred -----------------------------cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 003456778888899999999999999887421100000001357888889
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----------hh
Q 000159 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DK 971 (2013)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----------~~ 971 (2013)
.|.+.+..++..|+.+++.|+.........++ ..++|.++..|.+....+|..|..+|..++...+. ..
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 99999999999999999998863222233333 35789999999999999999999999999876432 23
Q ss_pred hHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC--------CCChh------hhHHHHHhhcCCCChHHHHHHHHHHH
Q 000159 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAA------HLLKPASIAMTDKSSDVRKAAEACIV 1037 (2013)
Q Consensus 972 ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--------~~~~~------~ll~pl~~~L~D~~~dVR~aA~~~L~ 1037 (2013)
+++.+...|.++ ++.+|..++..|...+..... ..... ..+..|...+.|.+.+|++.|..++.
T Consensus 429 ~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 429 CIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp CHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677788888765 588888888877766543211 01111 12344666779999999999988887
Q ss_pred HHHHHc
Q 000159 1038 EILRAG 1043 (2013)
Q Consensus 1038 ~l~~~~ 1043 (2013)
.+...-
T Consensus 507 ~~~~~~ 512 (530)
T 1wa5_B 507 TYFGEE 512 (530)
T ss_dssp HHSSSC
T ss_pred HHCCcc
Confidence 665443
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-05 Score=111.28 Aligned_cols=604 Identities=11% Similarity=0.062 Sum_probs=304.9
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcc----hhhhH-hHHH
Q 000159 296 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHF----SGSSR-FLLP 369 (2013)
Q Consensus 296 s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f----~~~~~-~llp 369 (2013)
+.+=..|++|-+.|..+-+.| +....+..++. +.+..|+..|+.++....+.--..+ ..+++ .++.
T Consensus 18 ~~d~~~r~~A~~~L~~~~~~p--------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~ 89 (971)
T 2x1g_F 18 RSNSQNQAITHEWLTDAEASP--------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILE 89 (971)
T ss_dssp TSTTTC----CHHHHHTTTST--------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCH--------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHH
Confidence 344456888888887764433 22223344454 6678899999999988876433333 22333 3333
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCC-ChHhHHHHHHHHhhcC------ChHHHHHHHHHHHHHHHh---cC----
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCL-NLVDVVEDVKTSVKNK------VPLVRSLTLNWVTFCIET---SS---- 435 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~~~~-~l~~il~~l~~~l~~K------np~vR~~~l~~L~~~l~~---~~---- 435 (2013)
.+.... ...+.||..+..++..++.+ .. ....+++++...+++. ++..+...+.+|..+.+. ..
T Consensus 90 ~l~~~~-~~~~~vr~kl~~~la~i~~~-~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~ 167 (971)
T 2x1g_F 90 SIVRFA-GGPKIVLNRLCISLGAYIVH-MLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVK 167 (971)
T ss_dssp HHHHHT-TSCHHHHHHHHHHHHHHHHH-TTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHHHH-ccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHH
Confidence 333332 23478999999999999988 33 6778999999888765 677888888888866542 11
Q ss_pred ----hhHHHHhhhhHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHH--hCchhHHHHHhhccHHHHHHHH-HHH
Q 000159 436 ----KAAVLKVHKDYVPICMECLNDGT--------PEVRDAAFSVLAAIAKS--VGMRPLERSIEKLDDVRRNKLS-EMI 500 (2013)
Q Consensus 436 ----~~~l~~~l~~l~p~l~k~l~Ds~--------~~VR~aA~~al~~l~~~--~Ge~~~~~~l~~Ld~~~~kki~-e~~ 500 (2013)
+..+...++.+++.+..++.+.. .+++.++.+|+..+... ++.....++++.+- . |. .++
T Consensus 168 r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~----~-L~~~~~ 242 (971)
T 2x1g_F 168 RVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLL----E-VVHKCY 242 (971)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH----H-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHH----h-hhhhhc
Confidence 12233445677777777775332 27999999999988875 33221112222110 0 00 000
Q ss_pred hcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccc----cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCc
Q 000159 501 AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA----SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK 576 (2013)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~----s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~ 576 (2013)
....+....... . ..+..+..+. ..... +.
T Consensus 243 ~~~~~~~~~~~~------------~----~~~~~~~~a~~~l~~i~~~--~~---------------------------- 276 (971)
T 2x1g_F 243 WPCIHAGDGCMT------------A----DENELAESCLKTMVNIIIQ--PD---------------------------- 276 (971)
T ss_dssp SSSCC---CCCC------------H----HHHHHHHHHHHHHHHHHHC--SG----------------------------
T ss_pred cccccccccccC------------c----CCcHHHHHHHHHHHHHHcC--cc----------------------------
Confidence 000000000000 0 0000000000 00000 00
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhccC--cHHHHhhhcCCC----HHHHHHHHHHHHHHHHhc----------------cC
Q 000159 577 LTEAPEDVEPSEMSLEEIESRLGSLI--PADTVGQLKSAV----WKERLEAISSLRQQVEAV----------------QN 634 (2013)
Q Consensus 577 ~~~~~~~~~~~~~S~ee~e~~~~~~l--~~~l~~~L~s~~----Wk~Rl~ale~L~~~v~~~----------------~~ 634 (2013)
. . + ...-+...+..++ ...+...+.+.+ |..+ ...+-+..+.+.. +.
T Consensus 277 ---~-~---~---~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (971)
T 2x1g_F 277 ---C-H---N---YPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIV-HIYMLFVSSVERHSTLLLSGITSADPELSIL 345 (971)
T ss_dssp ---G-G---G---CHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHH-HHHHHHHHHHHHTHHHHHHHHHTCCHHHHHH
T ss_pred ---c-c---c---cHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHH-HHHHHHHHHHHHHHHHHHHHhccCcccccHH
Confidence 0 0 0 0000100000000 011111222233 3222 1122222222110 00
Q ss_pred cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--------C----CchhhHHHHHHHHHhhhc--------
Q 000159 635 LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--------K----FPKKCVVLCLLGISERVA-------- 694 (2013)
Q Consensus 635 ~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~--------~----~~~~~~~~il~~LveKlg-------- 694 (2013)
.....+.++.+. ..||+...+..|...++++|..+++... . .....+..+++.++.++.
T Consensus 346 l~~~l~~ll~~~-~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~ 424 (971)
T 2x1g_F 346 VHRIVQEILHCT-DKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLA 424 (971)
T ss_dssp HHHHHHHHHHHH-HCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTS
T ss_pred HHHHHHHHHHHH-cCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 111123333332 2466655556688899999988876221 1 113456667777787762
Q ss_pred --Ch-------hhhHHHHHHHHHHHhhhChhHHHHHHHHHhh---h-----CCChhHHHHHHHHHHHHHHHhCCCC-CCh
Q 000159 695 --DI-------KTRAHAMKCLTTFSEAVGPGFIFERLYKIMK---D-----HKNPKVLSEGILWMVSAVEDFGVSH-LKL 756 (2013)
Q Consensus 695 --D~-------K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~---~-----~KnpKv~~~~l~~L~~li~~fG~~~-l~~ 756 (2013)
|. ..|..+.++|..++...+ +.+++.++..+. . ..+|+.+.+++..+..+.+...... -.+
T Consensus 425 ~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l 503 (971)
T 2x1g_F 425 KWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQI 503 (971)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHH
T ss_pred ccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 10 246778889999888776 455555554331 2 2789999999999888765433221 124
Q ss_pred hhHHHHHHhcCC-CCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccC
Q 000159 757 KDLIDFCKDTGL-QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (2013)
Q Consensus 757 k~li~~l~~~gL-~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~ 835 (2013)
..+++.+..+ . .+.++.||..|..+++.+..+++... .|+..+-+.++..+
T Consensus 504 ~~l~~~l~~l-~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-------------------------- 555 (971)
T 2x1g_F 504 PRLMRVLAEI-PYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-------------------------- 555 (971)
T ss_dssp HHHHHHHHHS-CTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHhc-CccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh--------------------------
Confidence 5566655543 2 24689999999999999988887532 34444333333333
Q ss_pred CCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc--hhHHHHH
Q 000159 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVM 913 (2013)
Q Consensus 836 s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D--sN~~V~~ 913 (2013)
| .+++..|...+..+++++...+.|. +.+|+..|...+.. .......
T Consensus 556 ----------------------------~--~~v~~~A~~al~~l~~~~~~~l~p~-~~~ll~~l~~~l~~~~~~~~~~~ 604 (971)
T 2x1g_F 556 ----------------------------N--SSMSAQATLGLKELCRDCQLQLKPY-ADPLLNACHASLNTGRMKNSDSV 604 (971)
T ss_dssp ----------------------------H--SSCHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHSTTSCHHHHH
T ss_pred ----------------------------C--hHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHcCCCCChHHHH
Confidence 1 2334556667777776654555555 47788887777754 3467888
Q ss_pred HHHHHHHHHHHHhC-hhhHhhhhhHHHHHHHHhC----CC--cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCC
Q 000159 914 ATLITLGAVASAMG-PAVEKSSKGVLSDILKCLG----DN--KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLG 986 (2013)
Q Consensus 914 ~Al~~l~~La~alg-~~~~~~~~~llp~ll~~L~----D~--k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~ 986 (2013)
..+++++.++.+++ ..+.+|+..++++++..+. .. ...-+.....+++.+.. +...+... ..
T Consensus 605 ~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~----------~~~~l~~~-~~ 673 (971)
T 2x1g_F 605 RLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST----------LFSSLNTD-VD 673 (971)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH----------HHHHHTC----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------HHhhcCCC-cC
Confidence 88999999998876 5677888888888877654 21 22233334444443321 11112110 00
Q ss_pred hhhHHHH--HHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000159 987 AEGRKDL--FDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2013)
Q Consensus 987 p~~R~~~--l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2013)
+ .+.+. -.-+..++ ..+..++.-++.... .+.+|.+.+..++..+...+|.+ +.+++
T Consensus 674 ~-~~~~~~~~~~~~~~~------~~i~~~l~~~l~~~~-~~~~v~e~~~~~~~~~~~~~~~~-~~p~l 732 (971)
T 2x1g_F 674 E-QATDQPIVQPVLLVM------QRTMPIFKRIAEMWV-EEIDVLEAACSAMKHAITNLRSS-FQPML 732 (971)
T ss_dssp -----------CCHHHH------HTTHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHC---CTHH
T ss_pred c-ccccccCCCchHHHH------HHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhhhhh-ccccH
Confidence 0 00000 00000001 122333333333332 46789999999999999888876 55553
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-06 Score=116.96 Aligned_cols=462 Identities=11% Similarity=0.034 Sum_probs=257.9
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
......+.+++..+.+++...|+-...++..++... + ..+-.++..+.+-|.|+++.||..|..+|+.+. .
T Consensus 66 ~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~----e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~ 136 (618)
T 1w63_A 66 YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDER-Q----DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG----S 136 (618)
T ss_dssp CCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-H----HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----C
T ss_pred CCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-c----HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----C
Confidence 345667777888888999999988777766655432 1 123457788899999999999999988887653 2
Q ss_pred hhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCC
Q 000159 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (2013)
Q Consensus 479 ~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~ 558 (2013)
..+ ++.+-
T Consensus 137 ~~~---~~~l~--------------------------------------------------------------------- 144 (618)
T 1w63_A 137 SEM---CRDLA--------------------------------------------------------------------- 144 (618)
T ss_dssp HHH---HHHHH---------------------------------------------------------------------
T ss_pred HHH---HHHHH---------------------------------------------------------------------
Confidence 211 11100
Q ss_pred CCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchH
Q 000159 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS 638 (2013)
Q Consensus 559 ~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~ 638 (2013)
+.+...|.|.+.-.|..|+..+..++....+..
T Consensus 145 ---------------------------------------------~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-- 177 (618)
T 1w63_A 145 ---------------------------------------------GEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-- 177 (618)
T ss_dssp ---------------------------------------------HHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--
T ss_pred ---------------------------------------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--
Confidence 123334445555556666666666655422211
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc-----------------ChhhhHH
Q 000159 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA-----------------DIKTRAH 701 (2013)
Q Consensus 639 ~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg-----------------D~K~r~~ 701 (2013)
+.++..+. ..+.|.|..|+..++.++..+....++. ...+..++|.++..+. ++-.+..
T Consensus 178 -~~~~~~l~--~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 -EMFLPATK--NLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp -GGGGGGTT--TSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred -HHHHHHHH--HHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 11111111 2356667677766666666554321110 0122233444443322 2333444
Q ss_pred HHHHHHHHHhhhChh------HHHHHHHHHhh--hCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcH
Q 000159 702 AMKCLTTFSEAVGPG------FIFERLYKIMK--DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773 (2013)
Q Consensus 702 a~e~L~~l~e~~~~~------~Vl~~L~~~l~--~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~ 773 (2013)
+.++|..++... ++ -++..++.... .+.++-|..+++..+..+ +...--....+..+..+ +.+.++
T Consensus 254 il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~~~~l~~~a~~~L~~~-L~~~d~ 327 (618)
T 1w63_A 254 ILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KSESGLRVLAINILGRF-LLNNDK 327 (618)
T ss_dssp HHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHH-HTCSST
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHH-HhCCCC
Confidence 555555554321 11 13333333211 233456777777766542 22110012245556666 788899
Q ss_pred hHHHHHHHHHHHHHHhhChhHHhhh-------hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCC
Q 000159 774 ATRNATIKLLGALHKFVGPDIKGFL-------ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (2013)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L-------~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lp 846 (2013)
+||..|...++.+....+..+..++ .+-.+.+...--+-+-++..
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~---------------------------- 379 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVN---------------------------- 379 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC----------------------------
T ss_pred chHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc----------------------------
Confidence 9999999999888765433232222 11111111111011111110
Q ss_pred CcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHh
Q 000159 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM 926 (2013)
Q Consensus 847 r~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~al 926 (2013)
...+ ..+..+|+.-+.+.+-..|.+++..+..+.. +..+. +...+..|...|.+.+..+...++..+..+...
T Consensus 380 ~~nv-~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~----k~~~~-~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~- 452 (618)
T 1w63_A 380 GNNI-RGMMKELLYFLDSCEPEFKADCASGIFLAAE----KYAPS-KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN- 452 (618)
T ss_dssp SSST-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----SSCCC-HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH-
T ss_pred cccH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HhCcc-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc-
Confidence 0011 1244667777777888899999999998875 22233 477788888888877777777777777777754
Q ss_pred ChhhHhhhhhHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHhcC-------------chhhHHHHHHHHhcCCCChhhHH
Q 000159 927 GPAVEKSSKGVLSDILKCLGD--NKKHMRECTLTVLDAWLAAVH-------------LDKMVPYVTTALTDAKLGAEGRK 991 (2013)
Q Consensus 927 g~~~~~~~~~llp~ll~~L~D--~k~~Vr~aa~~aL~~i~~~~g-------------l~~ll~~l~~~L~~~k~~p~~R~ 991 (2013)
.+++.. ..+..++..+.+ ....+..++.-+|+.+...+. ...+++.+...+.+...++.+|.
T Consensus 453 ~p~l~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~ 529 (618)
T 1w63_A 453 SVEMHA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRG 529 (618)
T ss_dssp SCSTHH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred ChhHHH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 334333 234455555543 223344567888888887541 23355555565542112588999
Q ss_pred HHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHH
Q 000159 992 DLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 992 ~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
.++..+.+.+...+ +....+.. +-.+..|.+.|||..|..++.-+
T Consensus 530 ~~lta~~Kl~~~~~---~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 530 YALTAIMKLSTRFT---CTVNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp HHHHHHHHHHTTCS---SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc---chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999988776554 22444444 44567899999999999766544
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.3e-08 Score=126.20 Aligned_cols=384 Identities=11% Similarity=0.051 Sum_probs=261.1
Q ss_pred hhhhccCCChHHHHHHHHHHHHHhhccCCCCchHHH--hhhhhhHhhhcCCc-HHHHHHHHHHHHHHHHHhchhhhhh-H
Q 000159 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR--ELGPLFKKTVADSN-APVQDKALDALIAYLKAADADAGRY-A 91 (2013)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~--~~~~~~~k~v~DsN-~~vqe~~leal~~~v~~~~~~~~~~-~ 91 (2013)
|.+.|.+.+|..|..|...|.+.+....++.-..+. ...+.+.+++.+.+ +.+|..++.+|..+...... .... .
T Consensus 79 lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~ 157 (528)
T 4b8j_A 79 MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE-NTKVVI 157 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH-HHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 567888999999999999999887653222111121 23455566777776 99999999999888754222 2222 1
Q ss_pred -HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh--h-----hhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCC
Q 000159 92 -KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V-----DVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAK 162 (2013)
Q Consensus 92 -~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~--~-----~~v~~~L~~~~-~~KnpKv~~~~l~~L~~~l~~fG~~ 162 (2013)
...++.|+.-+-...+.+++.|..++..++.... . ..++..|+..+ .+.++.++..++.+|..+.......
T Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~ 237 (528)
T 4b8j_A 158 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP 237 (528)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC
T ss_pred hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 2477778776434688999999998888875321 1 13466777777 6788999999999998876643221
Q ss_pred C-cChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhh
Q 000159 163 I-IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241 (2013)
Q Consensus 163 ~-i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~ 241 (2013)
. .-...+++.|..++.+.|..||..|..++..+.. +.+ .. .+.+ +
T Consensus 238 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~--~~~---~~---------~~~~---~----------------- 283 (528)
T 4b8j_A 238 SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD--GTN---DK---------IQAV---I----------------- 283 (528)
T ss_dssp CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS--SCH---HH---------HHHH---H-----------------
T ss_pred cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCH---HH---------HHHH---H-----------------
Confidence 1 1235689999999999999999998777665542 111 00 0000 0
Q ss_pred hHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q 000159 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 321 (2013)
Q Consensus 242 ~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~ 321 (2013)
. .| + + +.+...+.+.+|..|..|+..|..++.+..-...
T Consensus 284 ----------~-~g-------------------------~---v--~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 284 ----------E-AG-------------------------V---C--PRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp ----------H-TT-------------------------C---H--HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ----------H-cC-------------------------H---H--HHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 0 00 0 1 2455667778899999999999988753210000
Q ss_pred C--hHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc
Q 000159 322 D--FTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG 397 (2013)
Q Consensus 322 ~--~~~l~~~L~k~l~D~-N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~ 397 (2013)
. -..+++.|...+.+. +..+...|+.+|+.|+.+-....... -..++|.|+..+.+....++..+..+|..+...+
T Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 0 023577788888877 99999999999999987433222222 2367899999999999999999999999988751
Q ss_pred CCC----h--HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---------HHHHhhh--hHHHHHHHHhcCCCHH
Q 000159 398 CLN----L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---------AVLKVHK--DYVPICMECLNDGTPE 460 (2013)
Q Consensus 398 ~~~----l--~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---------~l~~~l~--~l~p~l~k~l~Ds~~~ 460 (2013)
... + ..+++.|+..+.+.++.++..++..|..++...... .+...+. ..+..+..+..+.+++
T Consensus 403 ~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~ 482 (528)
T 4b8j_A 403 SHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNE 482 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHH
Confidence 100 1 245778888999999999999999999988643220 1111121 2356778889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000159 461 VRDAAFSVLAAIAKS 475 (2013)
Q Consensus 461 VR~aA~~al~~l~~~ 475 (2013)
|++.|...+..+...
T Consensus 483 v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 483 IYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999998876543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-08 Score=133.75 Aligned_cols=379 Identities=12% Similarity=0.085 Sum_probs=254.9
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhcc-Cc-c-----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NL-D-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-~~-~-----~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~ 676 (2013)
+.+++.|.+.++..|..|+..|..++.... +. . ...+.|+.+|.. +.+..++..++.+|..++...+.
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR-----EDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC-----TTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC-----CCCHHHHHHHHHHHHHHhCCCHH
Confidence 678899999999999999999998876532 11 1 124556666531 22377888899998888763211
Q ss_pred CchhhH-HHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhCh--hH-----HHHHHHHHhhhCCChhHHHHHHHHHHHHH
Q 000159 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (2013)
Q Consensus 677 ~~~~~~-~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~--~~-----Vl~~L~~~l~~~KnpKv~~~~l~~L~~li 746 (2013)
.....+ ..+++.|+.-+.+ ..++..|..+|..++..... .. +++.|+..+..+.++.++..++..|..+.
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111111 1367888887765 46899999999999864221 11 35566666546778999999999999887
Q ss_pred HHhCCCCC-ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCc
Q 000159 747 EDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPK 825 (2013)
Q Consensus 747 ~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~ 825 (2013)
........ -...+++.+..+ +.+.++.||..|..+|+.|......... .+ + .
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~------------~~---~-~---------- 284 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDKIQ------------AV---I-E---------- 284 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHHHH------------HH---H-H----------
T ss_pred cCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHH------------HH---H-H----------
Confidence 64322111 135678888888 9999999999999998876532111111 00 0 0
Q ss_pred ccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc
Q 000159 826 KTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (2013)
Q Consensus 826 R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~ 905 (2013)
..+.+.++..+.+.+|.+|..|+..|..++.........-.-..+++.|...|.
T Consensus 285 --------------------------~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 285 --------------------------AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp --------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred --------------------------cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc
Confidence 003456788888999999999999999887521110100001356788888888
Q ss_pred ch-hHHHHHHHHHHHHHHHHHhChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhHHH
Q 000159 906 DS-NKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPY 975 (2013)
Q Consensus 906 Ds-N~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl--------~~ll~~ 975 (2013)
+. +..|+..|+.+++.|+..-........ ..++|.++..|.+....++..|..+|..++...+. ..+++.
T Consensus 339 ~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 418 (528)
T 4b8j_A 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 418 (528)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 88 999999999999999863222222222 26789999999999999999999999999887331 246677
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHhccCCC--------CCChhh------hHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000159 976 VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 976 l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--------~~~~~~------ll~pl~~~L~D~~~dVR~aA~~~L~~l~~ 1041 (2013)
+...|.++ ++.++..++..|...+..... ...+.. .+..+.....+.+.+|++.|..++..+..
T Consensus 419 L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 419 LCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 88888765 578888877777665542211 111111 23446667789999999999988877654
Q ss_pred H
Q 000159 1042 A 1042 (2013)
Q Consensus 1042 ~ 1042 (2013)
.
T Consensus 497 ~ 497 (528)
T 4b8j_A 497 D 497 (528)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-06 Score=116.39 Aligned_cols=525 Identities=10% Similarity=0.083 Sum_probs=274.5
Q ss_pred HHHHHHHHhhccCCC--CchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcCCChh
Q 000159 31 ANIDLAALCDSITDP--KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPK 108 (2013)
Q Consensus 31 ayeeL~~~~~~~~d~--~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~ 108 (2013)
++.++++.+++.... .......-..-+++-+.+.+....-.++.-+..+.-. |.+......+++..+- +.+-.
T Consensus 11 ~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~-G~d~~~~~~~vik~~~----s~~~~ 85 (618)
T 1w63_A 11 RLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHML-GYPAHFGQLECLKLIA----SQKFT 85 (618)
T ss_dssp CHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHT-TCCCGGGHHHHHHHHH----SSSHH
T ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHc-CCCCcchHHHHHHHHc----CCchH
Confidence 366777777653210 0011112233455566666655555556555544333 3333333344443222 24666
Q ss_pred HHHHHHHHHHHHHhhhhhh---hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcCCChHHH
Q 000159 109 TVEKAQAVFMLWVELEAVD---VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVR 185 (2013)
Q Consensus 109 ~k~~A~~~ll~~~E~~~~~---~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~d~~VR 185 (2013)
.|..+--.+..|.+. +++ -++..|.+.+.++||-++..|+.+|..+ |...+ ...+++.+.++|.|+++.||
T Consensus 86 ~Krl~Yl~~~~~~~~-~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~~~~-~~~l~~~l~~~L~~~~~~VR 159 (618)
T 1w63_A 86 DKRIGYLGAMLLLDE-RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCM----GSSEM-CRDLAGEVEKLLKTSNSYLR 159 (618)
T ss_dssp HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHH----CCHHH-HHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhc----CCHHH-HHHHHHHHHHHHcCCCHHHH
Confidence 677664455555542 344 3567888999999999999999998765 32111 35678999999999999999
Q ss_pred HHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCC
Q 000159 186 ASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTAD 265 (2013)
Q Consensus 186 ~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~ 265 (2013)
..|..++..+|+...+ .+.. +++.+
T Consensus 160 k~A~~al~~l~~~~p~-~v~~-~~~~l----------------------------------------------------- 184 (618)
T 1w63_A 160 KKAALCAVHVIRKVPE-LMEM-FLPAT----------------------------------------------------- 184 (618)
T ss_dssp HHHHHHHHHHHHHCGG-GGGG-GGGGT-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHChH-HHHH-HHHHH-----------------------------------------------------
Confidence 9999999999986543 2321 11110
Q ss_pred CCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcC-CCC---CCCChHHHHHHHHHHhc------
Q 000159 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRI---APGDFTEVCRTLKKLIT------ 335 (2013)
Q Consensus 266 ~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-pki---~~~~~~~l~~~L~k~l~------ 335 (2013)
.+.+.+.+-..+..|+..|..+... |.. ...-...++..|...+.
T Consensus 185 -------------------------~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~ 239 (618)
T 1w63_A 185 -------------------------KNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPE 239 (618)
T ss_dssp -------------------------TTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTT
T ss_pred -------------------------HHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 0011112222222333333333210 000 00011223333333211
Q ss_pred -----ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHhcCCCh---HhH
Q 000159 336 -----DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK---EKKPTVAESLTQTLQAMHKAGCLNL---VDV 404 (2013)
Q Consensus 336 -----D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klk---dkk~~V~~aa~~aL~ai~~~~~~~l---~~i 404 (2013)
..+.-.....+++++.++..- +........+++.++.... .....|+- +|+.+++.- .... ..+
T Consensus 240 ~~~~~~~~~~~q~~il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~---ea~~~i~~l-~~~~~l~~~a 314 (618)
T 1w63_A 240 HDVSGISDPFLQVRILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAILY---ETVLTIMDI-KSESGLRVLA 314 (618)
T ss_dssp TCSSSSSCHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHH---HHHHHHHHS-CCCHHHHHHH
T ss_pred ccccCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHHH---HHHHHHHhc-CCCHHHHHHH
Confidence 124444445556666655320 1111122334444444332 22223333 334444432 1111 134
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHH
Q 000159 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (2013)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~ 484 (2013)
++.+...+.++++.+|..++.+|..+....+. .+....+.+..|+.|.+..||..|.+++..+. .+..+..+
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-----~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~---~~~nv~~i 386 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTDHN-----AVQRHRSTIVDCLKDLDVSIKRRAMELSFALV---NGNNIRGM 386 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-----HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHC---CSSSTHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-----HHHHHHHHHHHHccCCChhHHHHHHHHHHHHc---ccccHHHH
Confidence 56666778889999999999999988765432 23556778899999999999999988876553 33323322
Q ss_pred HhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 000159 485 IEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSA 564 (2013)
Q Consensus 485 l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~ 564 (2013)
+. .+.+++
T Consensus 387 v~--------eL~~~l---------------------------------------------------------------- 394 (618)
T 1w63_A 387 MK--------ELLYFL---------------------------------------------------------------- 394 (618)
T ss_dssp HH--------HHHHHH----------------------------------------------------------------
T ss_pred HH--------HHHHHH----------------------------------------------------------------
Confidence 21 121221
Q ss_pred CCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhcc-CcchHHHHHH
Q 000159 565 KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILV 643 (2013)
Q Consensus 565 ~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-~~~~~~~~lv 643 (2013)
.+.+-..|.+++..+........ ....+.+.++
T Consensus 395 ----------------------------------------------~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll 428 (618)
T 1w63_A 395 ----------------------------------------------DSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIM 428 (618)
T ss_dssp ----------------------------------------------HHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred ----------------------------------------------HhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 11222234444444444433321 1112334444
Q ss_pred HHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhh----------
Q 000159 644 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV---------- 713 (2013)
Q Consensus 644 ~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~---------- 713 (2013)
..|... +..|...++..+..++.+.++.....+..++..+-+.+........+..+|..+++..
T Consensus 429 ~lL~~~------~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~ 502 (618)
T 1w63_A 429 RVLTTA------GSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEP 502 (618)
T ss_dssp HHHHHT------GGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHhc------cchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccc
Confidence 444321 1123333444555555555554333333333333222222333334566666666533
Q ss_pred ---ChhHHHHHHHHHhhh-CCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 714 ---GPGFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 714 ---~~~~Vl~~L~~~l~~-~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
.+..++..+...+.. ..++.++..++..+.++...++. ....+...+..+ ..+.|.+||+-|...+.-+.
T Consensus 503 ~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~---~~~~l~~~L~~~-~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 503 IQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC---TVNRIKKVVSIY-GSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc---hHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHc
Confidence 344455555554322 57899999999999888776542 134455666666 88999999999998766554
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.5e-07 Score=120.88 Aligned_cols=501 Identities=12% Similarity=0.058 Sum_probs=288.0
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----
Q 000159 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---- 397 (2013)
Q Consensus 322 ~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~---- 397 (2013)
.|..-+..+...|.+.+..+...+++.+..+... -.....+|.|+..+.+..+.|++.+..+|..+..+.
T Consensus 112 ~~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~------~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 112 QFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA------ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp --------------CCSCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccccHHHHHHHhcCccHHHHHHHHHHHHhhhHH------HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 3444456666677767777777777777654321 234678999999999999999999999999887530
Q ss_pred -CCChHhHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcChh--HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 398 -CLNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKA--AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 398 -~~~l~~il~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
......+++.|+..|.+ .++.+|..++..|..+.. .... .+.. ...+|.|+.+|.+.++.||..|..+|..++
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa 262 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLL 262 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 01124678888888875 489999999999988433 2211 1111 358899999999999999999999999888
Q ss_pred HHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCC
Q 000159 474 KSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPA 553 (2013)
Q Consensus 474 ~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~ 553 (2013)
....+. ++.+.+ ..
T Consensus 263 ~~~~~~-------------~~~v~~---~g-------------------------------------------------- 276 (780)
T 2z6g_A 263 LHQEGA-------------KMAVRL---AG-------------------------------------------------- 276 (780)
T ss_dssp HHSTTH-------------HHHHHH---TT--------------------------------------------------
T ss_pred CCChhh-------------HHHHHH---cC--------------------------------------------------
Confidence 654331 111111 00
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhcc
Q 000159 554 SKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ 633 (2013)
Q Consensus 554 ~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~ 633 (2013)
.-+.++..|.+.+|+.|..++..|..+.....
T Consensus 277 ------------------------------------------------~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~ 308 (780)
T 2z6g_A 277 ------------------------------------------------GLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 308 (780)
T ss_dssp ------------------------------------------------HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred ------------------------------------------------CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 00234455556666666666655553332100
Q ss_pred C------cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHH
Q 000159 634 N------LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLT 707 (2013)
Q Consensus 634 ~------~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~ 707 (2013)
+ .....+.|++++.. .....+...+..++..+.. + ...+..
T Consensus 309 e~~~~i~~~~~i~~Lv~lL~~-----~~~~~~~~~a~~aL~~Ls~-~---------------------~~~~~~------ 355 (780)
T 2z6g_A 309 ESKLIILASGGPQALVNIMRT-----YTYEKLLWTTSRVLKVLSV-C---------------------SSNKPA------ 355 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHT-S---------------------TTHHHH------
T ss_pred HHHHHHHHcCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHhhc-C---------------------hHHHHH------
Confidence 0 00123344444321 0111122222333332221 1 011100
Q ss_pred HHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 708 TFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 708 ~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
+.+ .-+++.|+..+ .+.++.++..++..|..+...... ......+++.+..+ +.+.++.||..|..+|+.|.
T Consensus 356 -i~~----~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~i~~Lv~l-L~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 356 -IVE----AGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp -HHH----TTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCTT-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHT
T ss_pred -HHH----hchHHHHHHHH-cCCchHHHHHHHHHHHHHhccchh-hhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHH
Confidence 000 11334444443 455777888888777777754322 22346788888888 99999999999999998774
Q ss_pred HhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCC-CC
Q 000159 788 KFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PD 866 (2013)
Q Consensus 788 ~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d-~~ 866 (2013)
... +.....+ -+. ...+.|+..+.+ .+
T Consensus 428 ~~~-~~~~~~i---------------~~~------------------------------------g~i~~Lv~lL~~~~~ 455 (780)
T 2z6g_A 428 CNN-YKNKMMV---------------CQV------------------------------------GGIEALVRTVLRAGD 455 (780)
T ss_dssp SSC-HHHHHHH---------------HTT------------------------------------THHHHHHHHHHHHTT
T ss_pred hCC-HHHHHHH---------------HHC------------------------------------CCHHHHHHHHHccCC
Confidence 321 1111110 000 011234444433 34
Q ss_pred h-HHHHHHHHHHHHHHHhcccc---CCCCC-hhhHHHHHHhcccchh-HHHHHHHHHHHHHHHHHhChhhHhhh--hhHH
Q 000159 867 W-KVRLESIEAVNKILEEANKR---IQPAG-TGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (2013)
Q Consensus 867 W-k~R~eale~l~~il~~a~~~---I~~~~-~~eL~~~L~~rL~DsN-~~V~~~Al~~l~~La~alg~~~~~~~--~~ll 938 (2013)
| .+|..|+..|..|.... .. .+... -...++.|...|.+.+ ..|+..|+.+++.|+. +......+ ..++
T Consensus 456 ~~~v~~~Al~aL~nL~~~~-~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i 532 (780)
T 2z6g_A 456 REDITEPAICALRHLTSRH-QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAI 532 (780)
T ss_dssp CHHHHHHHHHHHHHTTSSS-TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCH
Confidence 4 78888888887764210 00 00000 0234677888887666 4899999999999984 33322211 2467
Q ss_pred HHHHHHhCCCc----------------------HHHHHHHHHHHHHHHHh------cCchhhHHHHHHHHhcCCCChhhH
Q 000159 939 SDILKCLGDNK----------------------KHMRECTLTVLDAWLAA------VHLDKMVPYVTTALTDAKLGAEGR 990 (2013)
Q Consensus 939 p~ll~~L~D~k----------------------~~Vr~aa~~aL~~i~~~------~gl~~ll~~l~~~L~~~k~~p~~R 990 (2013)
|.|++.|.+.. ..++.++..||..++.. +.-..+++.+...|.+. ++.++
T Consensus 533 ~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~ 610 (780)
T 2z6g_A 533 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP--IENIQ 610 (780)
T ss_dssp HHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--CHHHH
T ss_pred HHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--CHHHH
Confidence 88888776533 34667777777765421 11133577788888876 57888
Q ss_pred HHHHHHHHHHhccCCCC-CCh--hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 991 KDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 991 ~~~l~~L~~~l~~~~~~-~~~--~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
..++..|...... ... ..+ ...+.+|...+.|.+.+||..|..+|..+...-+
T Consensus 611 ~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 611 RVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 8888777655421 100 011 1245668889999999999999999998877655
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.86 E-value=0.0001 Score=103.09 Aligned_cols=332 Identities=10% Similarity=0.072 Sum_probs=185.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcc--C--cc------hHHHHHHHHHhcCCCCccc---HHHHHHHHHHHHHHHHHHcCCCch
Q 000159 613 AVWKERLEAISSLRQQVEAVQ--N--LD------QSVEILVRLVCMLPGWSEK---NVQVQQQVIEVINYLAATATKFPK 679 (2013)
Q Consensus 613 ~~Wk~Rl~ale~L~~~v~~~~--~--~~------~~~~~lv~~L~~~pgl~Ds---N~qV~~~~Le~l~~l~~~~~~~~~ 679 (2013)
.+|+.|.+|+..+..+..... . .. ...+.+...+ .|.+.|. +..|+..++.++..+.+. +.+
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v--~p~l~~~~~~~p~vr~~a~~~lg~~~~~---~~~ 491 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI--APDLTSNNIPHIILRVDAIKYIYTFRNQ---LTK 491 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT--HHHHHCSSCSCHHHHHHHHHHHHHTGGG---SCH
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh--HHHhcCCCCCCceehHHHHHHHHHHHhh---CCH
Confidence 479999999999998864321 0 11 1112222221 1334555 889999999999887764 345
Q ss_pred hhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhC-----------------hhHHHHHHHHHhhhCC---Chh--HH
Q 000159 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVG-----------------PGFIFERLYKIMKDHK---NPK--VL 735 (2013)
Q Consensus 680 ~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~-----------------~~~Vl~~L~~~l~~~K---npK--v~ 735 (2013)
..+..+++.++..+.|. .++..|..+|..+++... .+.+++.++..+ ... .++ ..
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll-~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI-LKHGSSPEKLAEN 570 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH-HTTCCCHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH-HhccCCCCccccc
Confidence 57888999999988884 579999999999988421 123444444443 221 122 34
Q ss_pred HHHHHHHHHHHHHhCCCCCC-hhhH----HHHHHhcCCC-CCcHhHHHHHHHHHHHHHHhhChh-HHhhhhhccHHHHHH
Q 000159 736 SEGILWMVSAVEDFGVSHLK-LKDL----IDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSA 808 (2013)
Q Consensus 736 ~~~l~~L~~li~~fG~~~l~-~k~l----i~~l~~~gL~-~~n~~VR~aA~~ll~~Ly~~~G~~-l~~~L~~lkp~ll~~ 808 (2013)
..++..|..++..++....+ ...+ +..+... .. ..++..+....++++.+.+..|+. +..+.+.+-|.+...
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~-~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~i 649 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIM-AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 56677777777777643222 1223 3333333 33 347888988999999999887764 344545555655554
Q ss_pred HHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHH--HhcCCCChHHHHHHHHHHHHHHHhccc
Q 000159 809 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV--KSLESPDWKVRLESIEAVNKILEEANK 886 (2013)
Q Consensus 809 Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll--~~l~d~~Wk~R~eale~l~~il~~a~~ 886 (2013)
++..........-..-..-+... +.+++ ....+-+-++ ..+....|- -..+..|...+.....
T Consensus 650 L~~~~~~~~~~~~~i~~~l~~~~-----------~~~~~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~~~~~~~~ 714 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVVEQS-----------ATIPE--SIKPLAQPLLAPNVWELKGNI--PAVTRLLKSFIKTDSS 714 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHHC-----------SSCCT--TTGGGHHHHTSGGGGCCTTTH--HHHHHHHHHHHHHHGG
T ss_pred HHhhhHhhHHHHHHHHHHHHHhc-----------cCCCH--HHHHHHHHHcCHHHhcCCCCc--hhHHHHHHHHHHhChH
Confidence 43211000000000000000000 00110 0111112222 222222221 1344445555543222
Q ss_pred cCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChh-hHhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHHHHH
Q 000159 887 RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWL 964 (2013)
Q Consensus 887 ~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~-~~~~~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i~ 964 (2013)
.+.. ...++..+...+.+.+. ...++.+++.++..+|.. |.+|+..+++.++..+...+ ..++.+....+..++
T Consensus 715 ~~~~--~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 715 IFPD--LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp GCSC--SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 2222 24456666666655432 378999999999999999 99999999999999997764 445555555555554
Q ss_pred HhcCch
Q 000159 965 AAVHLD 970 (2013)
Q Consensus 965 ~~~gl~ 970 (2013)
-..+.+
T Consensus 791 ~~~~~~ 796 (960)
T 1wa5_C 791 NKLGSD 796 (960)
T ss_dssp HHHCHH
T ss_pred HHcCHH
Confidence 444433
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-06 Score=116.35 Aligned_cols=518 Identities=13% Similarity=0.069 Sum_probs=298.8
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh-hhHhH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFL 367 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~l 367 (2013)
.+.+.|.+.+...|..++..++.+-. ..+ -...++.|.+.+.+.+..|+..|+.+|..|+..-.....- ....+
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~~-~~i----~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQDD-AEL----ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhhH-HHH----HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 57777888888888888887765421 111 1456777777888889999999999999998743221111 12468
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHHHHHhc----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000159 368 LPVLLEKLKEK-KPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2013)
Q Consensus 368 lp~LL~klkdk-k~~V~~aa~~aL~ai~~~~----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2013)
++.|+..+++. ...++..+..+|..+.... ...-..+++.|+..+++.++.+|..++..|..+........ ...
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MAV 272 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH-HHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH-HHH
Confidence 99999999754 7889999999998865320 00012467888899999999999999999999876543211 111
Q ss_pred -hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCC
Q 000159 443 -HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (2013)
Q Consensus 443 -l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (2013)
-...+|.+++++.+.+..||..+..++..+.. +.......+-.-+. ...+...+...
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~--i~~Lv~lL~~~------------------ 330 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGG--PQALVNIMRTY------------------ 330 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTH--HHHHHHHHTTC------------------
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCC--HHHHHHHHhcC------------------
Confidence 14688999999999999999999999986652 32211111100000 00111111000
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhcc
Q 000159 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (2013)
Q Consensus 522 s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~ 601 (2013)
+.+.....+
T Consensus 331 --------------------------------------------------------------------~~~~~~~~a--- 339 (780)
T 2z6g_A 331 --------------------------------------------------------------------TYEKLLWTT--- 339 (780)
T ss_dssp --------------------------------------------------------------------CCHHHHHHH---
T ss_pred --------------------------------------------------------------------CHHHHHHHH---
Confidence 001111000
Q ss_pred CcHHHHhhhcC-CCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh
Q 000159 602 IPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (2013)
Q Consensus 602 l~~~l~~~L~s-~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~ 680 (2013)
..++..|.. ...+.. ++.. ...+.|+.+ +.+.+..+...++.+|..++.......
T Consensus 340 --~~aL~~Ls~~~~~~~~---------i~~~-----g~l~~Ll~l------L~~~~~~~~~~a~~~L~~L~~~~~~~~-- 395 (780)
T 2z6g_A 340 --SRVLKVLSVCSSNKPA---------IVEA-----GGMQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE-- 395 (780)
T ss_dssp --HHHHHHHHTSTTHHHH---------HHHT-----THHHHHGGG------TTCSCHHHHHHHHHHHHHHHTTCTTCS--
T ss_pred --HHHHHHhhcChHHHHH---------HHHh-----chHHHHHHH------HcCCchHHHHHHHHHHHHHhccchhhh--
Confidence 011111111 111110 0000 012233333 344556677888888888876543321
Q ss_pred hHHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHhhhCCC-hhHHHHHHHHHHHHHHHhC
Q 000159 681 CVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKN-PKVLSEGILWMVSAVEDFG 750 (2013)
Q Consensus 681 ~~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~-------~~Vl~~L~~~l~~~Kn-pKv~~~~l~~L~~li~~fG 750 (2013)
....+++.|+..+.+ ..++..|..+|..++..... .-.++.|+..+....+ ..++..++..|..+....+
T Consensus 396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 234577888876654 56888888888887653210 1246666666644333 4899999888887643211
Q ss_pred CC-----CCChhhHHHHHHhcCCCCCc-HhHHHHHHHHHHHHHHhhChhHHhhh--hhccHHHHHHHHHHHhhCCCCCCC
Q 000159 751 VS-----HLKLKDLIDFCKDTGLQSSA-AATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTV 822 (2013)
Q Consensus 751 ~~-----~l~~k~li~~l~~~gL~~~n-~~VR~aA~~ll~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p 822 (2013)
.. .+-....++.+..+ |.+.+ +.||.+|..+|+.|.. ++.....+ .++-|.+.+.+......++.+..-
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~l-L~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~ 552 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhh
Confidence 10 00001245666666 77776 4999999999998864 44333333 345667777776533222110000
Q ss_pred CCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhc-c-ccCCCCChhhHHHHH
Q 000159 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-N-KRIQPAGTGELFGGL 900 (2013)
Q Consensus 823 ~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a-~-~~I~~~~~~eL~~~L 900 (2013)
+ .+... +. . ......++..++..|..+.... + ..+. -...++.|
T Consensus 553 a----------------l~nq~---------~~----~--~~~~~~v~~~a~~aL~~La~~~~~~~~l~---~~~~i~~L 598 (780)
T 2z6g_A 553 G----------------GTQQQ---------FV----E--GVRMEEIVEACTGALHILARDIHNRIVIR---GLNTIPLF 598 (780)
T ss_dssp ---------------------C---------CS----T--TCCHHHHHHHHHHHHHHHTTSHHHHHHHH---HTCCHHHH
T ss_pred c----------------cccch---------hh----c--ccChHHHHHHHHHHHHHHhcChhhHHHHH---HCCcHHHH
Confidence 0 00000 00 0 0011234556666666554210 0 0011 03457888
Q ss_pred HhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh--HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000159 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 901 ~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
...|.+.+..|+..|+.++..++. .+.....+.. .++.|+..+.+.+..||..|..+|..+...-+
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 899999999999999999998862 2334433333 67889999999999999999999999887654
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.77 E-value=6e-05 Score=105.39 Aligned_cols=538 Identities=13% Similarity=0.110 Sum_probs=296.7
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhh------cchhhh-H
Q 000159 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRT------HFSGSS-R 365 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~------~f~~~~-~ 365 (2013)
.+.+-..| |-+.|..+-+.| +| ...|...+. +.+..++..|+..+....+.--. .+.+.. .
T Consensus 15 ~spd~~~r--Ae~~L~~~~~~p-----~~---~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~ 84 (960)
T 1wa5_C 15 VIASTAKT--SERNLRQLETQD-----GF---GLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE 84 (960)
T ss_dssp TSGGGHHH--HHHHHHHHHTST-----TH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH
T ss_pred cCCCHHHH--HHHHHHHhhcCC-----CH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHH
Confidence 34455566 777777764433 23 334445553 34678899999999887764211 222221 2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh--------
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-------- 436 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-------- 436 (2013)
.+=..++..+......||..+..++..++.+ .....+++++.|...+++.++..+.+++..|..+++.+..
T Consensus 85 ~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~ 164 (960)
T 1wa5_C 85 LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELF 164 (960)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHH
Confidence 2223444444445588999999999999987 2234678999999999888888999999999998886542
Q ss_pred hHHHHhhhhHHH----HH---HHHhcCCCH---HHHHHHHHHHHHHHHHhCc----hhHHHHHhhccHHHHHHHHHHHhc
Q 000159 437 AAVLKVHKDYVP----IC---MECLNDGTP---EVRDAAFSVLAAIAKSVGM----RPLERSIEKLDDVRRNKLSEMIAG 502 (2013)
Q Consensus 437 ~~l~~~l~~l~p----~l---~k~l~Ds~~---~VR~aA~~al~~l~~~~Ge----~~~~~~l~~Ld~~~~kki~e~~~~ 502 (2013)
..+...+..+.+ .+ ..++.+... .+| .+.+++-.+.++++. ..-..+.+.++.- ...+...+..
T Consensus 165 ~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~ 242 (960)
T 1wa5_C 165 LEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN-ILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVG-MGIFHKYLSY 242 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH-HHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHH-HHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHH-HHHHHHHHcC
Confidence 111112222233 22 333665533 255 233333333333321 0000011111110 1111122211
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCC
Q 000159 503 SGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPE 582 (2013)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~ 582 (2013)
. .|.. ..++ +
T Consensus 243 ~------------------------------------------~p~~---------------------------~~d~-d 252 (960)
T 1wa5_C 243 S------------------------------------------NPLL---------------------------EDPD-E 252 (960)
T ss_dssp C------------------------------------------SCCC---------------------------C-----
T ss_pred C------------------------------------------CCcc---------------------------cCCc-c
Confidence 0 0000 0000 0
Q ss_pred CCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccC-cchH----HHHHHHHHhcCCCCcccHH
Q 000159 583 DVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN-LDQS----VEILVRLVCMLPGWSEKNV 657 (2013)
Q Consensus 583 ~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~-~~~~----~~~lv~~L~~~pgl~DsN~ 657 (2013)
+.+.+ ..|+.|..+++.|..+++...+ ..+. .+.++..+... +-....-
T Consensus 253 ---~~~~~----------------------~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~~ 306 (960)
T 1wa5_C 253 ---TEHAS----------------------VLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSI-SNQPKYD 306 (960)
T ss_dssp -----CCC----------------------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC-CSCTTSH
T ss_pred ---ccccc----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCcH
Confidence 00001 1245555555555555443211 1111 22333333211 1012234
Q ss_pred HHHHHHHHHHHHHHHHc--CC-C-chhhHHHHH-HHHHhhh------------------------cC-hhhhHHHHHHHH
Q 000159 658 QVQQQVIEVINYLAATA--TK-F-PKKCVVLCL-LGISERV------------------------AD-IKTRAHAMKCLT 707 (2013)
Q Consensus 658 qV~~~~Le~l~~l~~~~--~~-~-~~~~~~~il-~~LveKl------------------------gD-~K~r~~a~e~L~ 707 (2013)
.+...++++|..+++.- .. + ....+..++ +.++..+ .| ...|..|.++|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 57778888888776421 11 1 113333333 2222221 01 135788999999
Q ss_pred HHHhhhChhHHHHHHHHHh---hh------CCChhHHHHHHHHHHHHHHHh-----CCC----CCChhhH-HHHHHhcCC
Q 000159 708 TFSEAVGPGFIFERLYKIM---KD------HKNPKVLSEGILWMVSAVEDF-----GVS----HLKLKDL-IDFCKDTGL 768 (2013)
Q Consensus 708 ~l~e~~~~~~Vl~~L~~~l---~~------~KnpKv~~~~l~~L~~li~~f-----G~~----~l~~k~l-i~~l~~~gL 768 (2013)
.++...+ +.+++.++..+ .. +.+|+.+.+++..+..+.+.. |.. .+++..+ ...+... +
T Consensus 387 ~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~-l 464 (960)
T 1wa5_C 387 ELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD-L 464 (960)
T ss_dssp HHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH-H
T ss_pred HHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHH-h
Confidence 9999887 55655555433 22 678999999999998886431 111 1144443 3344444 6
Q ss_pred CCC---cHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000159 769 QSS---AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2013)
Q Consensus 769 ~~~---n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2013)
.+. ++-||..|..+++.+..++.+. ++..
T Consensus 465 ~~~~~~~p~vr~~a~~~lg~~~~~~~~~---~l~~--------------------------------------------- 496 (960)
T 1wa5_C 465 TSNNIPHIILRVDAIKYIYTFRNQLTKA---QLIE--------------------------------------------- 496 (960)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSCHH---HHHH---------------------------------------------
T ss_pred cCCCCCCceehHHHHHHHHHHHhhCCHH---HHHH---------------------------------------------
Confidence 666 8999999999998776543211 1111
Q ss_pred CCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhc-----------cccCCCCChhhHHHHHHhcccch-----hH
Q 000159 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-----------NKRIQPAGTGELFGGLRGRLYDS-----NK 909 (2013)
Q Consensus 846 pr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a-----------~~~I~~~~~~eL~~~L~~rL~Ds-----N~ 909 (2013)
+.+.++..+.|.+-.+|..|...+..+++.. ...+.|. +.+|+..|...+... ..
T Consensus 497 --------~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~-l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 497 --------LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS-TEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp --------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT-HHHHHHHHHHHHHTTCCCHHHH
T ss_pred --------HHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhh-HHHHHHHHHHHHHhccCCCCcc
Confidence 2234555666777788999999999888631 1235555 477888887777542 11
Q ss_pred HHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHhcCc-------hhhHHHHH
Q 000159 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD-----NKKHMRECTLTVLDAWLAAVHL-------DKMVPYVT 977 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D-----~k~~Vr~aa~~aL~~i~~~~gl-------~~ll~~l~ 977 (2013)
.....++.+++.++..++..+.+|+..+++.++..+.. .++..+..+.+||..++...+. +.++|.+.
T Consensus 568 ~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~ 647 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFL 647 (960)
T ss_dssp TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 13357788999999999999999999999988877642 4567888899999999988552 34556666
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHh
Q 000159 978 TALTDAKLGAEGRKDLFDWLSKQL 1001 (2013)
Q Consensus 978 ~~L~~~k~~p~~R~~~l~~L~~~l 1001 (2013)
..|.+. ......+++..+...+
T Consensus 648 ~iL~~~--~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 648 TVFSED--IQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHTT--CTTTHHHHHHHHHHHH
T ss_pred HHHHhh--hHhhHHHHHHHHHHHH
Confidence 666543 1334555555544333
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4.2e-07 Score=122.98 Aligned_cols=295 Identities=12% Similarity=0.175 Sum_probs=214.4
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHHHhh----hhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhH
Q 000159 94 VCDAIAAKCLTG-RPKTVEKAQAVFMLWVEL----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKR 168 (2013)
Q Consensus 94 v~~~LveK~l~~-k~~~k~~A~~~ll~~~E~----~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~ 168 (2013)
++..++.+...+ ....++.|..+.-.+..- ..+..+++.|.+++.+|+.- ++++..+..+.+.||... +..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~-~~e~ 91 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSP-SVEP 91 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCT-TTHH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCC-Cccc
Confidence 344455553223 344445554444433311 11347889999998877544 999999999998898743 3355
Q ss_pred ----HHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHh
Q 000159 169 ----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKE 244 (2013)
Q Consensus 169 ----il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~ 244 (2013)
+++.+...++|.++.||++|...+..++..+.+.+++..|
T Consensus 92 ~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~------------------------------------ 135 (986)
T 2iw3_A 92 YIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALL------------------------------------ 135 (986)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHH------------------------------------
T ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHH------------------------------------
Confidence 4577788889999999999999988888888764331111
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhh-ccCCHHHHHHHHHHHHHHhc-CCCCCCCC
Q 000159 245 LGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV-KATKWSERKDAVAELTKLAS-TKRIAPGD 322 (2013)
Q Consensus 245 ~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l-~s~kWkeR~eaL~~L~~l~~-~pki~~~~ 322 (2013)
+.+++.+ .+.||+.+..||..|..++. .|......
T Consensus 136 -------------------------------------------~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~ 172 (986)
T 2iw3_A 136 -------------------------------------------PHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR 172 (986)
T ss_dssp -------------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred -------------------------------------------HHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 1233333 34589999999999999984 45444455
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---C-
Q 000159 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---C- 398 (2013)
Q Consensus 323 ~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~---~- 398 (2013)
+.++++.+..++-|....|...|..++..++..+++ .-+..++|.|++.+.+... .-+|++.+.... .
T Consensus 173 ~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n---~d~~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v 244 (986)
T 2iw3_A 173 MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN---KDIERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEV 244 (986)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC---TTTGGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCC
T ss_pred ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC---cchhhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeee
Confidence 789999999999999999999999999999988875 3455677888888887744 446666665540 1
Q ss_pred --CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc-ChhHHHHhhhhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Q 000159 399 --LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECL-NDGTPEVRDAAFSVLAAIAK 474 (2013)
Q Consensus 399 --~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~k~l-~Ds~~~VR~aA~~al~~l~~ 474 (2013)
.++.-+.|.|..+|..+...+|+.++-.+.++..-. ++....++++.++|.+.+.. +-++||||+.|.+|+.++.+
T Consensus 245 ~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 245 TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 125567899999999999999999998888866544 34556678899999999976 57899999999999999887
Q ss_pred HhCc
Q 000159 475 SVGM 478 (2013)
Q Consensus 475 ~~Ge 478 (2013)
..+.
T Consensus 325 ~~~~ 328 (986)
T 2iw3_A 325 VGNV 328 (986)
T ss_dssp HHTC
T ss_pred hhcc
Confidence 7654
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=9e-05 Score=98.89 Aligned_cols=469 Identities=12% Similarity=0.046 Sum_probs=276.6
Q ss_pred hhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcCh
Q 000159 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSK 436 (2013)
Q Consensus 363 ~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~-----~~l~~il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~ 436 (2013)
+....+|.|+..+++..+.|+..+..+|..+..... .....+++.|...|.+. ++.+|..++..|..+.. ...
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~ 89 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HRE 89 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-Chh
Confidence 345578999999999999999999999999886510 01235678888888864 89999999998885432 221
Q ss_pred hHHHHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000159 437 AAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSAR 515 (2013)
Q Consensus 437 ~~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~ 515 (2013)
..... -...+|.++.++.+.++.||..|..+|..+.....+. . ..+.+ .+
T Consensus 90 -~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~-~------------~~v~~---~g------------ 140 (644)
T 2z6h_A 90 -GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-K------------MAVRL---AG------------ 140 (644)
T ss_dssp -HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH-H------------HHHHH---TT------------
T ss_pred -hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh-H------------HHHHH---CC------------
Confidence 11111 1358899999999999999999999999887654321 1 11110 00
Q ss_pred ccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHH
Q 000159 516 VQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIE 595 (2013)
Q Consensus 516 ~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e 595 (2013)
T Consensus 141 -------------------------------------------------------------------------------- 140 (644)
T 2z6h_A 141 -------------------------------------------------------------------------------- 140 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHH
Q 000159 596 SRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669 (2013)
Q Consensus 596 ~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~------~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~ 669 (2013)
.-+.++..|.+.+|+.+..++..|..+..+.++. ....+.|+++|.. .....+...++.++..
T Consensus 141 ------~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~-----~~~~~~~~~a~~~L~n 209 (644)
T 2z6h_A 141 ------GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT-----YTYEKLLWTTSRVLKV 209 (644)
T ss_dssp ------HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT-----CCCHHHHHHHHHHHHH
T ss_pred ------ChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc-----CChHHHHHHHHHHHHH
Confidence 0023445555666666666655555444211000 0113344444421 0112222333333322
Q ss_pred HHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHh
Q 000159 670 LAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF 749 (2013)
Q Consensus 670 l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~f 749 (2013)
+.. +...+.. +.+. -+++.+++.+ .+.++.++..++..|..+....
T Consensus 210 Ls~----------------------~~~~~~~-------l~~~----g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 210 LSV----------------------CSSNKPA-------IVEA----GGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp HTT----------------------CTTHHHH-------HHHT----THHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGC
T ss_pred Hhc----------------------CcccHHH-------HHHC----CCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcc
Confidence 211 1111111 1111 1344555544 4557888888888888876543
Q ss_pred CCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCccccc
Q 000159 750 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (2013)
Q Consensus 750 G~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r 829 (2013)
. .......+++.+..+ +.+.++.||..|..+|..|... ++.....+ . +. +
T Consensus 256 ~-~~~~~~~~i~~Lv~l-L~~~d~~v~~~a~~aL~~L~~~-~~~~~~~v-----------~----~~-g----------- 305 (644)
T 2z6h_A 256 T-KQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCN-NYKNKMMV-----------C----QV-G----------- 305 (644)
T ss_dssp T-TCCSCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTT-CHHHHHHH-----------H----HT-T-----------
T ss_pred h-hhhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHcC-CHHHHHHH-----------H----Hc-C-----------
Confidence 2 223346788888888 9999999999999999887542 11111111 0 00 0
Q ss_pred CccccCCCCCCCCCCCCCcccccccchHHHHhcCC--CChHHHHHHHHHHHHHHHhccc--cCCCCC-hhhHHHHHHhcc
Q 000159 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES--PDWKVRLESIEAVNKILEEANK--RIQPAG-TGELFGGLRGRL 904 (2013)
Q Consensus 830 ~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d--~~Wk~R~eale~l~~il~~a~~--~I~~~~-~~eL~~~L~~rL 904 (2013)
..+.|+..+.+ ..+.+|..|+..|..+...... ..+... -...++.|...|
T Consensus 306 ------------------------~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL 361 (644)
T 2z6h_A 306 ------------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 361 (644)
T ss_dssp ------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTT
T ss_pred ------------------------CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHh
Confidence 11234444433 2378888888888887531000 000000 124577888888
Q ss_pred cchh-HHHHHHHHHHHHHHHHHhChhhHh-h-hhhHHHHHHHHhCCC----------------------cHHHHHHHHHH
Q 000159 905 YDSN-KNLVMATLITLGAVASAMGPAVEK-S-SKGVLSDILKCLGDN----------------------KKHMRECTLTV 959 (2013)
Q Consensus 905 ~DsN-~~V~~~Al~~l~~La~alg~~~~~-~-~~~llp~ll~~L~D~----------------------k~~Vr~aa~~a 959 (2013)
.+.+ ..++..|+.+++.|+.. ....+ . -..++|.++..|.+. ...|+.++..+
T Consensus 362 ~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~a 439 (644)
T 2z6h_A 362 HPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 439 (644)
T ss_dssp STTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHH
Confidence 7764 68999999999988743 22211 1 234778888777653 34567777777
Q ss_pred HHHHHHhc------CchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCC-Ch--hhhHHHHHhhcCCCChHHHH
Q 000159 960 LDAWLAAV------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DA--AHLLKPASIAMTDKSSDVRK 1030 (2013)
Q Consensus 960 L~~i~~~~------gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~-~~--~~ll~pl~~~L~D~~~dVR~ 1030 (2013)
|..++... .-...++.+...|.+. ++.++..++..|...... .... .+ ...+.++..++.|.+++||.
T Consensus 440 L~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr~ 516 (644)
T 2z6h_A 440 LHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVAT 516 (644)
T ss_dssp HHHHTTSHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred HHHHhcCHHHHHHHHhCCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCCHHHHH
Confidence 77554321 1124567788888765 577888877776654421 1000 01 12355688889999999999
Q ss_pred HHHHHHHHHHHHcCh
Q 000159 1031 AAEACIVEILRAGGQ 1045 (2013)
Q Consensus 1031 aA~~~L~~l~~~~G~ 1045 (2013)
+|..+|..+...-+.
T Consensus 517 ~A~~aL~~l~~~~~~ 531 (644)
T 2z6h_A 517 YAAAVLFRMSEDKPQ 531 (644)
T ss_dssp HHHHHHHHHTTTSCH
T ss_pred HHHHHHHHHhccCcH
Confidence 999999887665543
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.7e-05 Score=100.52 Aligned_cols=623 Identities=12% Similarity=0.070 Sum_probs=345.2
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHHHhC---CCC-------------cChhHHHHhhhhhhcCC--ChHHHHHHHHHHH
Q 000159 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFG---AKI-------------IPPKRILKMLPELFDHQ--DQNVRASSKGLTL 193 (2013)
Q Consensus 132 ~L~~~~~~KnpKv~~~~l~~L~~~l~~fG---~~~-------------i~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ 193 (2013)
.+...+..+++++..++..++..+++.+- .+. ..++.++..|...+.+. ....|+.+++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~ 175 (810)
T 3now_A 96 WFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELIT 175 (810)
T ss_dssp HHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHH
Confidence 44566778999999888888777766553 222 13566888888888877 6889999999976
Q ss_pred HHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcC-----CCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCC
Q 000159 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVS-----GTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPP 268 (2013)
Q Consensus 194 ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~-----~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~ 268 (2013)
.-..+-.-......... + - ++.|-+-...++ +..+.+--+|.+..--... --+. .
T Consensus 176 ~~~~~~~~~~~~~~~~~--~-g-~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~--~~~~--------------~ 235 (810)
T 3now_A 176 RNVHYTALEWAERLVEI--R-G-LCRLLDVCSELEDYKYESAMDITGSSSTIASVCLAR--IYEN--------------M 235 (810)
T ss_dssp HHTTCTTTTHHHHHHHT--T-H-HHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHH--HHHT--------------C
T ss_pred HhCCccccccccchhhH--h-h-HHHHHHHHhcCccccccccCCCChhHHHHHHHHHHH--HHHH--------------h
Confidence 54422211011111111 0 0 111111111111 1111122223332100000 0000 0
Q ss_pred CCCCCCCCCcccccccCcchhhh-hhhccCCHHHHHHHHHHHHHHhcCCC-CCCCCh--HHHHHHHHHHhcccCHHHHHH
Q 000159 269 EIDEYELVDPVDILTPLEKSGFW-EGVKATKWSERKDAVAELTKLASTKR-IAPGDF--TEVCRTLKKLITDVNIAVAVE 344 (2013)
Q Consensus 269 ~iD~~dl~~~vdIl~kl~~~~f~-~~l~s~kWkeR~eaL~~L~~l~~~pk-i~~~~~--~~l~~~L~k~l~D~N~~V~~~ 344 (2013)
..| ..-+.+.++. ++|. .++....-..+..|...+..+..++- .-..-+ ...+..|...+...+..+...
T Consensus 236 ~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~ 309 (810)
T 3now_A 236 YYD-----EAKARFTDQI-DEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRV 309 (810)
T ss_dssp CSH-----HHHHHHHHHH-HHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHH
T ss_pred ccc-----hhHHHHHHHH-HHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHH
Confidence 000 0112333333 2333 35566777788888888888775431 111001 135667777778778888899
Q ss_pred HHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----C------CChHhHHHHHHHHhh
Q 000159 345 AIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----C------LNLVDVVEDVKTSVK 413 (2013)
Q Consensus 345 A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~----~------~~l~~il~~l~~~l~ 413 (2013)
|+.+++.++.. +.+..+ ...-+|.|...++.+...++.-+..+|..+...+ . .++..+++.+...|.
T Consensus 310 A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~ 387 (810)
T 3now_A 310 ACECLIAASSK--KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLI 387 (810)
T ss_dssp HHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhc
Confidence 99999997765 222222 2233488888889888889987777777775321 0 113566777778887
Q ss_pred cC--ChHHHHHHHHHHHHHHHhcChhHHHHhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhcc
Q 000159 414 NK--VPLVRSLTLNWVTFCIETSSKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (2013)
Q Consensus 414 ~K--np~vR~~~l~~L~~~l~~~~~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld 489 (2013)
+. ++.+|..++..|..+-... ..-.... ..++|.|+.++...++.+...|..+|+.+.. |.+. + ..+.
T Consensus 388 ~~~~d~~v~~~AveaLayLS~~~--~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~--~~d~-q---~~~~ 459 (810)
T 3now_A 388 KPGKDKDIRRWAADGLAYLTLDA--ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN--AYEK-Q---EMLP 459 (810)
T ss_dssp CSSCCSSHHHHHHHHHHHHTTSH--HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--CSCC-C---CCCC
T ss_pred CCCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC--Cchh-h---hhhH
Confidence 76 7899999998888753321 1111122 4688999999998899998888888776654 3211 0 0000
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 490 DVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGS 569 (2013)
Q Consensus 490 ~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~ 569 (2013)
.+.++ .+. ++. ..
T Consensus 460 -----~l~~l-----------------------------------a~~-----s~~-~v--------------------- 472 (810)
T 3now_A 460 -----EMIEL-----------------------------------AKF-----AKQ-HI--------------------- 472 (810)
T ss_dssp -----SCGGG-----------------------------------TTT-----TCC-SC---------------------
T ss_pred -----HHHHH-----------------------------------HHH-----hhc-cC---------------------
Confidence 00000 000 000 00
Q ss_pred CCCcCCcCCCCCCCCCCCCCCH-HHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhc
Q 000159 570 GKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCM 648 (2013)
Q Consensus 570 ~~~~~s~~~~~~~~~~~~~~S~-ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~ 648 (2013)
.+ ...... +... .|...+ ++. ...+.|+..+.
T Consensus 473 --------~~------~~~ld~~~~v~---------------------~r~~~V------vea-----GaVp~LV~LL~- 505 (810)
T 3now_A 473 --------PE------EHELDDVDFIN---------------------KRITVL------ANE-----GITTALCALAK- 505 (810)
T ss_dssp --------CC------SSCHHHHHHHH---------------------HHHHHH------HHT-----THHHHHHHHHT-
T ss_pred --------cc------ccccccHHHHH---------------------HHHHHH------HHC-----cCHHHHHHHHc-
Confidence 00 000001 1111 111111 111 12344444442
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhc--ChhhhHHHHHHHHHHHhhhChhHH------
Q 000159 649 LPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFI------ 718 (2013)
Q Consensus 649 ~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlg--D~K~r~~a~e~L~~l~e~~~~~~V------ 718 (2013)
..+..|++.+..+|..++.. .. .+..+ .-++|.|+.-+. +.+.+..|..+|..++....++.+
T Consensus 506 -----s~s~~vqe~Aa~aL~NLA~d-~~-~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 506 -----TESHNSQELIARVLNAVCGL-KE-LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTS-HH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred -----CCCHHHHHHHHHHHHHHcCC-HH-HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 12345556666666655531 11 11111 114555555443 456788888888888765555433
Q ss_pred ---HHHHHHHhhhCCChhHHHHHHHHHHHHHHHh---CCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhCh
Q 000159 719 ---FERLYKIMKDHKNPKVLSEGILWMVSAVEDF---GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (2013)
Q Consensus 719 ---l~~L~~~l~~~KnpKv~~~~l~~L~~li~~f---G~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~ 792 (2013)
++.|+..+....+...+.+++..|.++...- ....+. ...++.+..+ +.+.++.||.+|..+++.|.. ++
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~L-L~s~~~~Vq~~A~~~L~NLa~--~~ 654 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYY-LMEDHLYLTRAAAQCLCNLVM--SE 654 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHH-HHSCCTTHHHHHHHHHHHHTT--SH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhC--Ch
Confidence 3444444322224455668888888776310 000000 1245556666 788899999999999998853 33
Q ss_pred hHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHH
Q 000159 793 DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLE 872 (2013)
Q Consensus 793 ~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~e 872 (2013)
+.... |.. +. + ..+-|+..+...+-.+|.+
T Consensus 655 ~~~~~---------------~v~--~~--------------------------------g-~l~~Lv~LL~s~d~~vq~~ 684 (810)
T 3now_A 655 DVIKM---------------FEG--NN--------------------------------D-RVKFLALLCEDEDEETATA 684 (810)
T ss_dssp HHHHH---------------HHS--SS--------------------------------S-HHHHHHHGGGCSSHHHHHH
T ss_pred HHHHH---------------HHh--cc--------------------------------C-cHHHHHHHhcCCCHHHHHH
Confidence 32111 110 00 0 1245777788888999999
Q ss_pred HHHHHHHHHHhccccCCCCCh-hhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh--hhHHHHHHHHhCCC-
Q 000159 873 SIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDN- 948 (2013)
Q Consensus 873 ale~l~~il~~a~~~I~~~~~-~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp~ll~~L~D~- 948 (2013)
|.-.|..+.......++.-.- ...++.|...|.+.+..++..|+.++..++.+ +.....++ ...++.+...+.++
T Consensus 685 Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d 763 (810)
T 3now_A 685 CAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPD 763 (810)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcc
Confidence 999999888631111111000 34678888888999999999999999999873 33333332 23788888888765
Q ss_pred --cHHHHHHHHHHHHHHHHh
Q 000159 949 --KKHMRECTLTVLDAWLAA 966 (2013)
Q Consensus 949 --k~~Vr~aa~~aL~~i~~~ 966 (2013)
+..+++.|..+|..+.+.
T Consensus 764 ~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 764 DTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp STTHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhC
Confidence 678999999999988765
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-05 Score=106.34 Aligned_cols=487 Identities=13% Similarity=0.060 Sum_probs=284.3
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhc--C--CC
Q 000159 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAG--C--LN 400 (2013)
Q Consensus 327 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdk-k~~V~~aa~~aL~ai~~~~--~--~~ 400 (2013)
+..|.+.+.+.+..++..|+.+|+.|+..-.....-. ...+++.|+..+.+. ...++..+..+|..+.... . ..
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 4555566778899999999999999997543221111 236789999999865 7888888888888765320 0 00
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 401 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 401 l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
-..+++.|...+++.++.++..++..|..+........ ... -...+|.++++|.+.++.++.++..+|..+.. +..
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~ 172 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQ 172 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH-HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH-HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh--cCc
Confidence 02467888889999999999999999999876543221 111 25689999999999999999999999987764 222
Q ss_pred hHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q 000159 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (2013)
Q Consensus 480 ~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~ 559 (2013)
.....+-.... ...+.+.+...
T Consensus 173 ~~~~~i~~~g~--v~~Lv~lL~~~-------------------------------------------------------- 194 (644)
T 2z6h_A 173 ESKLIILASGG--PQALVNIMRTY-------------------------------------------------------- 194 (644)
T ss_dssp HHHHHHHHTTH--HHHHHHHHTTC--------------------------------------------------------
T ss_pred HHHHHHHHcCC--hHHHHHHHHcC--------------------------------------------------------
Confidence 11111110000 00111111100
Q ss_pred CCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHH
Q 000159 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSV 639 (2013)
Q Consensus 560 ~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~ 639 (2013)
+.+++...+ ..++..|... -..|.. +++. ...
T Consensus 195 ------------------------------~~~~~~~~a-----~~~L~nLs~~-~~~~~~-------l~~~-----g~l 226 (644)
T 2z6h_A 195 ------------------------------TYEKLLWTT-----SRVLKVLSVC-SSNKPA-------IVEA-----GGM 226 (644)
T ss_dssp ------------------------------CCHHHHHHH-----HHHHHHHTTC-TTHHHH-------HHHT-----THH
T ss_pred ------------------------------ChHHHHHHH-----HHHHHHHhcC-cccHHH-------HHHC-----CCH
Confidence 001110000 0111112110 011100 0000 012
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhCh--
Q 000159 640 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-- 715 (2013)
Q Consensus 640 ~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~-- 715 (2013)
+.++.+ +.+.+..+...++.+|..+....+... ....+++.|+.-+.+ ..++..+..+|..++.....
T Consensus 227 ~~L~~l------l~~~~~~~~~~a~~~L~nL~~~~~~~~--~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~ 298 (644)
T 2z6h_A 227 QALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298 (644)
T ss_dssp HHHHTT------TTCSCHHHHHHHHHHHHHHGGGCTTCC--SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHH------HhcCCHHHHHHHHHHHHHHhhcchhhh--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 333333 344567788888888888775433321 234567777776654 57888888888888753211
Q ss_pred -----hHHHHHHHHHhhhCC-ChhHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCCc-HhHHHHHHHHH
Q 000159 716 -----GFIFERLYKIMKDHK-NPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSA-AATRNATIKLL 783 (2013)
Q Consensus 716 -----~~Vl~~L~~~l~~~K-npKv~~~~l~~L~~li~~fG~~~-----l~~k~li~~l~~~gL~~~n-~~VR~aA~~ll 783 (2013)
.-+++.|+..+.... .+.++..++..|..+....+... +--...++.+..+ |.+.+ +.||.+|..++
T Consensus 299 ~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L 377 (644)
T 2z6h_A 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLI 377 (644)
T ss_dssp HHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT-TSTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH-hCccCchHHHHHHHHHH
Confidence 114666666654333 48999999999988853222100 0001356667777 88775 79999999999
Q ss_pred HHHHHhhChhHHhhh--hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHh
Q 000159 784 GALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS 861 (2013)
Q Consensus 784 ~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~ 861 (2013)
..|.. ++.....+ .+.-|.+.+.+......++.+..-+ . ..+ ++..
T Consensus 378 ~nLa~--~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~a----------l------~n~-----~~~~--------- 425 (644)
T 2z6h_A 378 RNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG----------G------TQQ-----QFVE--------- 425 (644)
T ss_dssp HHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-------------------------------CC---------
T ss_pred HHHcc--CHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhc----------c------ccc-----hhcc---------
Confidence 88864 33322222 4566777777766544443211000 0 000 0000
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhh--hHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVL 938 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~--~ll 938 (2013)
+..+..++..++..|..+.... ...... -...++.|...|.+.+..|+..|+.++..++.. ++....+. ..+
T Consensus 426 -~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l 500 (644)
T 2z6h_A 426 -GVRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGAT 500 (644)
T ss_dssp -SSCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCH
T ss_pred -cccHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCh
Confidence 0112345566666666554311 000000 134677888888999999999999998888732 33333222 246
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000159 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 939 p~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
+.+...+.+.++.||..|..+|..+....+
T Consensus 501 ~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 501 APLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 788999999999999999999988766553
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.65 E-value=6e-05 Score=100.98 Aligned_cols=606 Identities=15% Similarity=0.139 Sum_probs=359.7
Q ss_pred ccCCHHHHHHHHHHHHHHhcC----CCCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHH
Q 000159 295 KATKWSERKDAVAELTKLAST----KRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLL 368 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~----pki~~~~~~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ll 368 (2013)
.+.+-..|..|+..|.-|+.. .+|...+ -+..|.+.+++ .|.-++..|++++..|+++=+...... -..=.
T Consensus 18 ~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~---~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~ 94 (810)
T 3now_A 18 LATPIDKRRAAANNLVVLAKEQTGAELLYKDH---CIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGV 94 (810)
T ss_dssp SCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred cccCHHHHHHHHhhceeeeccccchHHHHhCc---hHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCH
Confidence 345556677788887766631 2222211 24466666774 889999999999999998654332212 22235
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHh--cC-----------------CChHhHHHHHHHHhhcCC--hHHHHHHHHHH
Q 000159 369 PVLLEKLKEKKPTVAESLTQTLQAMHKA--GC-----------------LNLVDVVEDVKTSVKNKV--PLVRSLTLNWV 427 (2013)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~ai~~~--~~-----------------~~l~~il~~l~~~l~~Kn--p~vR~~~l~~L 427 (2013)
|.+...+.-+...+..++..++..++.. +. ..++.++..++..+.+++ ...|-.+++.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~ 174 (810)
T 3now_A 95 PWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELI 174 (810)
T ss_dssp HHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHH
Confidence 6677777778888888998998888866 11 013344555666666655 79999999999
Q ss_pred HHHHHhcChh---HHH--HhhhhHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHHHhCchh-HHHHHhhccHHHH
Q 000159 428 TFCIETSSKA---AVL--KVHKDYVPICMECLNDG--------TPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRR 493 (2013)
Q Consensus 428 ~~~l~~~~~~---~l~--~~l~~l~p~l~k~l~Ds--------~~~VR~aA~~al~~l~~~~Ge~~-~~~~l~~Ld~~~~ 493 (2013)
.+.+.+.... .+. ..++.++.+... +.+. .+++|..+.-|+..++.-.+.+. -+.|-.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~-~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~------- 246 (810)
T 3now_A 175 TRNVHYTALEWAERLVEIRGLCRLLDVCSE-LEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTD------- 246 (810)
T ss_dssp HHHTTCTTTTHHHHHHHTTHHHHHHHHHTC-CSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHH-------
T ss_pred HHhCCccccccccchhhHhhHHHHHHHHhc-CccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHH-------
Confidence 9887554211 111 133444433222 2232 67899999999999998888421 122222
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccc-c-ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 494 NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS-A-ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGK 571 (2013)
Q Consensus 494 kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~-~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~ 571 (2013)
.+.+++...-. .+. . . ..++.. + +..+++
T Consensus 247 -~~~~~~~~~~~-----~~~------------~---~-~~~~a~~alt~i~~g--------------------------- 277 (810)
T 3now_A 247 -QIDEYIKDKLL-----APD------------M---E-SKVRVTVAITALLNG--------------------------- 277 (810)
T ss_dssp -HHHHHHHHHHS-----SCC------------H---H-HHHHHHHHHHHHHSS---------------------------
T ss_pred -HHHHHHHHHhc-----cCC------------h---H-hHHHHHHHHHHHhcC---------------------------
Confidence 22233221000 000 0 0 000000 0 000000
Q ss_pred CcCCcCCCCCCCCCCCCCCHHHHHHHh-hccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc----hHHHHHHHHH
Q 000159 572 QETSKLTEAPEDVEPSEMSLEEIESRL-GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLV 646 (2013)
Q Consensus 572 ~~~s~~~~~~~~~~~~~~S~ee~e~~~-~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~----~~~~~lv~~L 646 (2013)
..+...... .+-+-+.++..+.|.+-..+..|++.+..........+ ...+.|+.+
T Consensus 278 ------------------~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~L- 338 (810)
T 3now_A 278 ------------------PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRL- 338 (810)
T ss_dssp ------------------SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHH-
T ss_pred ------------------CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHH-
Confidence 011111111 11122678899999999999999999987554311110 112333333
Q ss_pred hcCCCCcccHHHHHHHHHHHHHHHHHHc------CCCchhhHHHHHHHHHhhhcC----hhhhHHHHHHHHHHHhhhC--
Q 000159 647 CMLPGWSEKNVQVQQQVIEVINYLAATA------TKFPKKCVVLCLLGISERVAD----IKTRAHAMKCLTTFSEAVG-- 714 (2013)
Q Consensus 647 ~~~pgl~DsN~qV~~~~Le~l~~l~~~~------~~~~~~~~~~il~~LveKlgD----~K~r~~a~e~L~~l~e~~~-- 714 (2013)
++..+..+...++-.|..+.... ..|....+..+++.++.-+.+ ...+..|.++|..++....
T Consensus 339 -----l~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk 413 (810)
T 3now_A 339 -----YHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECK 413 (810)
T ss_dssp -----TTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHH
T ss_pred -----HcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHH
Confidence 33445566677777777776321 233333455666666665554 4578888888888764321
Q ss_pred -----hhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC---------------CC------C----hh-------
Q 000159 715 -----PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---------------HL------K----LK------- 757 (2013)
Q Consensus 715 -----~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~---------------~l------~----~k------- 757 (2013)
-.-+++.|+..+ ++.++.++.+++..|.++....-.. .+ + ++
T Consensus 414 ~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vv 492 (810)
T 3now_A 414 EKLIEDKASIHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA 492 (810)
T ss_dssp HHHHHCHHHHHHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHH
Confidence 123466666665 5778999999999999998743100 00 0 11
Q ss_pred --hHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccC
Q 000159 758 --DLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (2013)
Q Consensus 758 --~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~ 835 (2013)
..++.+..+ +.+.++.||+.|..+|..|.. .+..+..+ -+ .+
T Consensus 493 eaGaVp~LV~L-L~s~s~~vqe~Aa~aL~NLA~--d~~~r~~V-----------v~-------~G--------------- 536 (810)
T 3now_A 493 NEGITTALCAL-AKTESHNSQELIARVLNAVCG--LKELRGKV-----------VQ-------EG--------------- 536 (810)
T ss_dssp HTTHHHHHHHH-HTCCCHHHHHHHHHHHHHHHT--SHHHHHHH-----------HH-------TT---------------
T ss_pred HCcCHHHHHHH-HcCCCHHHHHHHHHHHHHHcC--CHHHHHHH-----------HH-------CC---------------
Confidence 245566666 788889999999888877742 11122111 00 00
Q ss_pred CCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCC-CC-ChhhHHHHHHhccc-chhHHHH
Q 000159 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ-PA-GTGELFGGLRGRLY-DSNKNLV 912 (2013)
Q Consensus 836 s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~-~~-~~~eL~~~L~~rL~-DsN~~V~ 912 (2013)
..+.|+..+.+...+.|..|...|..++...++.+. .. ...+.++.|...|. |.+...+
T Consensus 537 ------------------aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~ 598 (810)
T 3now_A 537 ------------------GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALEN 598 (810)
T ss_dssp ------------------HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHH
T ss_pred ------------------CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHH
Confidence 123455666666677899999999998875433221 11 11346788888885 3344445
Q ss_pred HHHHHHHHHHHHHhChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCC
Q 000159 913 MATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAK 984 (2013)
Q Consensus 913 ~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k 984 (2013)
..|+.++..|+..-...-...+ ...+|.++..|.+.+..|+.+|..+|..++..-. -...++.+...+.+.
T Consensus 599 ~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~- 677 (810)
T 3now_A 599 FESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE- 677 (810)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-
Confidence 6788888888854211111222 2478999999999999999999999998874311 123567777777765
Q ss_pred CChhhHHHHHHHHHHHhccCCCC-CCh---hhhHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000159 985 LGAEGRKDLFDWLSKQLTGLSGF-PDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 985 ~~p~~R~~~l~~L~~~l~~~~~~-~~~---~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~ 1041 (2013)
+..+|.+++..|.......... ..+ ...+++|+..|.+.+.+||+.|..++..+..
T Consensus 678 -d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 678 -DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp -SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 4678888776665433322210 111 3467789999999999999999999988765
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-05 Score=101.83 Aligned_cols=482 Identities=13% Similarity=0.065 Sum_probs=272.3
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhc--C--C
Q 000159 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAG--C--L 399 (2013)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdk-k~~V~~aa~~aL~ai~~~~--~--~ 399 (2013)
.++.|.+.+.+.+..++..|+.+|..|+..-...-.-. ....++.|++.+... ...++..+..+|..+.... . .
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 46666677788899999999999999986432111111 236889999998754 7888888888888765320 0 0
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 400 ~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
.-...++.+...+++.++.++..++..|..+........-.-.-...+|.+++++.+.++++|..+..+|..+.. +..
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~--~~~ 175 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQ 175 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh--CCH
Confidence 001367788888999999999999999998776543211100114678999999999999999999999986653 322
Q ss_pred hHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q 000159 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (2013)
Q Consensus 480 ~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~ 559 (2013)
.....+-.-+. ...+.+.+...
T Consensus 176 ~~~~~i~~~~~--i~~L~~ll~~~-------------------------------------------------------- 197 (529)
T 1jdh_A 176 ESKLIILASGG--PQALVNIMRTY-------------------------------------------------------- 197 (529)
T ss_dssp HHHHHHHHTTH--HHHHHHHHHHC--------------------------------------------------------
T ss_pred HHHHHHHHCCC--HHHHHHHHHhC--------------------------------------------------------
Confidence 11111111000 00111111100
Q ss_pred CCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcC-CCHHHHHHHHHHHHHHHHhccCcchH
Q 000159 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQS 638 (2013)
Q Consensus 560 ~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s-~~Wk~Rl~ale~L~~~v~~~~~~~~~ 638 (2013)
+.++....+ ..++..|.. ..-+.. ++.. ..
T Consensus 198 ------------------------------~~~~~~~~a-----~~~L~~l~~~~~~~~~---------~~~~-----g~ 228 (529)
T 1jdh_A 198 ------------------------------TYEKLLWTT-----SRVLKVLSVCSSNKPA---------IVEA-----GG 228 (529)
T ss_dssp ------------------------------CCHHHHHHH-----HHHHHHHTTSTTHHHH---------HHHT-----TH
T ss_pred ------------------------------ChHHHHHHH-----HHHHHHHhcCcccHHH---------HHHC-----CC
Confidence 000000000 011111111 111100 0000 11
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhC--
Q 000159 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG-- 714 (2013)
Q Consensus 639 ~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~-- 714 (2013)
.+.++.+ +.+.+..+...++.++..+....+... ....++|.|+.-+.+ ..++..+..+|..++....
T Consensus 229 ~~~L~~l------l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 300 (529)
T 1jdh_A 229 MQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300 (529)
T ss_dssp HHHHHTT------TTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHH------HhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 2333333 345566778888888887776433321 234567777776654 5678888888888765311
Q ss_pred h-----hHHHHHHHHHhhh-CCChhHHHHHHHHHHHHHHHhCCC-----CCChhhHHHHHHhcCCCCCc-HhHHHHHHHH
Q 000159 715 P-----GFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSA-AATRNATIKL 782 (2013)
Q Consensus 715 ~-----~~Vl~~L~~~l~~-~KnpKv~~~~l~~L~~li~~fG~~-----~l~~k~li~~l~~~gL~~~n-~~VR~aA~~l 782 (2013)
- .-+++.++..+.. ..++.++..++..|..+....+.. .+--...++.+..+ +.+.+ +.||..|..+
T Consensus 301 ~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l-L~~~~~~~v~~~a~~~ 379 (529)
T 1jdh_A 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGL 379 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH-hccccchHHHHHHHHH
Confidence 0 1245666666543 345899999999998875321110 00001245666666 88776 6999999999
Q ss_pred HHHHHHhhChhHHhhh--hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHH
Q 000159 783 LGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (2013)
Q Consensus 783 l~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~ 860 (2013)
++.+.. ++.....+ .++-|.+...+.....+++.+..-. +. .. .+....
T Consensus 380 l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~----l~------------n~-----~~~~~~------ 430 (529)
T 1jdh_A 380 IRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG----GT------------QQ-----QFVEGV------ 430 (529)
T ss_dssp HHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC--------------------------------CBTTB------
T ss_pred HHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcc----cC------------ch-----hhhccc------
Confidence 888864 33332322 3566777777766544443211000 00 00 000000
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh--hh
Q 000159 861 SLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KG 936 (2013)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~il~~a~--~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~ 936 (2013)
....++..++..+..++.... ..+. -...++.|...+.|.+..|+..++.++..++. .+.....+ ..
T Consensus 431 ----~~~~i~~~~~~al~~L~~~~~~~~~l~---~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~--~~~~~~~i~~~~ 501 (529)
T 1jdh_A 431 ----RMEEIVEGCTGALHILARDVHNRIVIR---GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEG 501 (529)
T ss_dssp ----CHHHHHHHHHHHHHHHTTSHHHHHHHH---HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SHHHHHHHHHTT
T ss_pred ----cHHHHHHHHHHHHHHHhcCchHHHHHh---ccCCccHHHHHHcCCchHHHHHHHHHHHHHhc--CHHHHHHHHHcC
Confidence 011223344455554432100 0011 02356788888999999999999998888762 12222222 13
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAW 963 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i 963 (2013)
.++.+...+.+.++.|+..|..+|..+
T Consensus 502 ~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 502 ATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 567888888899999999988887654
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.61 E-value=5.6e-05 Score=97.89 Aligned_cols=461 Identities=13% Similarity=0.059 Sum_probs=264.2
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHhHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcChh
Q 000159 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKA 437 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~-----~~l~~il~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~~~ 437 (2013)
....+|.+++.+++..+.+++.+..+|..+..... ......++.+...+.+ .++.++..++..|..+... +.
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~- 92 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-RE- 92 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HH-
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-ch-
Confidence 45678999999999999999999999998875310 0112567788888875 4899999999999885332 11
Q ss_pred HHHHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000159 438 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARV 516 (2013)
Q Consensus 438 ~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~ 516 (2013)
..... -...+|.++.++.+.+++||..|..+|+.+...-.+. +..+.+. +
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~~--g-------------- 143 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------------KMAVRLA--G-------------- 143 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHH--T--------------
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch-------------HHHHHHc--C--------------
Confidence 11111 1358899999999999999999999998887653321 1111110 0
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHH
Q 000159 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (2013)
Q Consensus 517 ~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~ 596 (2013)
T Consensus 144 -------------------------------------------------------------------------------- 143 (529)
T 1jdh_A 144 -------------------------------------------------------------------------------- 143 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHH
Q 000159 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (2013)
Q Consensus 597 ~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~------~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l 670 (2013)
.-+.++..|.+.+|+.|..+...|..+.....+. ....+.+++++... ....+...+..++..+
T Consensus 144 -----~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 144 -----GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-----TYEKLLWTTSRVLKVL 213 (529)
T ss_dssp -----HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC-----ChHHHHHHHHHHHHHH
Confidence 0023445556666777766666665443211000 00122333333210 0111111222222111
Q ss_pred HHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhC
Q 000159 671 AATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750 (2013)
Q Consensus 671 ~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG 750 (2013)
.. ++..+.. +.+ .-+++.+++.+ .+.++.++..++..|..+.....
T Consensus 214 ~~----------------------~~~~~~~-------~~~----~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 214 SV----------------------CSSNKPA-------IVE----AGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp TT----------------------STTHHHH-------HHH----TTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCT
T ss_pred hc----------------------CcccHHH-------HHH----CCCHHHHHHHH-hCCChHHHHHHHHHHHHHhcCCh
Confidence 10 1111111 111 11345555554 45688888888888888776432
Q ss_pred CCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccC
Q 000159 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (2013)
Q Consensus 751 ~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2013)
. ......+++.+..+ +.+.++.||..|..++..|... ++.....+ . +..
T Consensus 260 ~-~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~-----------~----~~~------------- 308 (529)
T 1jdh_A 260 K-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCN-NYKNKMMV-----------C----QVG------------- 308 (529)
T ss_dssp T-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTT-CHHHHHHH-----------H----HTT-------------
T ss_pred h-hHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH-----------H----HcC-------------
Confidence 2 22346788888888 9999999999999999887432 11111111 0 000
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcC--CCChHHHHHHHHHHHHHHHhcccc---CCCCC-hhhHHHHHHhcc
Q 000159 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLE--SPDWKVRLESIEAVNKILEEANKR---IQPAG-TGELFGGLRGRL 904 (2013)
Q Consensus 831 ~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~--d~~Wk~R~eale~l~~il~~a~~~---I~~~~-~~eL~~~L~~rL 904 (2013)
..+.++..+. +.+|.+|..|+..|..+.... .. .+... -...++.|...|
T Consensus 309 -----------------------~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~i~~~~~i~~L~~lL 364 (529)
T 1jdh_A 309 -----------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRH-QEAEMAQNAVRLHYGLPVVVKLL 364 (529)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS-TTHHHHHHHHHHTTCHHHHHHTT
T ss_pred -----------------------ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHcCChhHHHHHh
Confidence 1123444443 235888999988888775311 00 00000 023467788888
Q ss_pred cchh-HHHHHHHHHHHHHHHHHhChhhHh-hh-hhHHHHHHHHhCCCcHHHHHHHH----------------------HH
Q 000159 905 YDSN-KNLVMATLITLGAVASAMGPAVEK-SS-KGVLSDILKCLGDNKKHMRECTL----------------------TV 959 (2013)
Q Consensus 905 ~DsN-~~V~~~Al~~l~~La~alg~~~~~-~~-~~llp~ll~~L~D~k~~Vr~aa~----------------------~a 959 (2013)
.+.+ ..++..++.+++.++. ++.... +. ..++|.++..|.+....+|..+. .+
T Consensus 365 ~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~a 442 (529)
T 1jdh_A 365 HPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442 (529)
T ss_dssp STTCCHHHHHHHHHHHHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHH
Confidence 8776 5899999999999884 333222 22 25789999998876666665433 33
Q ss_pred HHHHHHhc------CchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCC-C--hhhhHHHHHhhcCCCChHHHH
Q 000159 960 LDAWLAAV------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-D--AAHLLKPASIAMTDKSSDVRK 1030 (2013)
Q Consensus 960 L~~i~~~~------gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~-~--~~~ll~pl~~~L~D~~~dVR~ 1030 (2013)
|..++... .-...++.+...+.++ ++.+|..+...|..... ..... . -...+.++..++.|.+++||+
T Consensus 443 l~~L~~~~~~~~~l~~~~~v~~l~~ll~~~--~~~v~~~a~~~l~~l~~-~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~ 519 (529)
T 1jdh_A 443 LHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVAT 519 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSSHHHHH
T ss_pred HHHHhcCchHHHHHhccCCccHHHHHHcCC--chHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHhcCCCHHHHH
Confidence 33322110 0123456777778766 47788777766665331 11000 0 123456688889999999999
Q ss_pred HHHHHHHHH
Q 000159 1031 AAEACIVEI 1039 (2013)
Q Consensus 1031 aA~~~L~~l 1039 (2013)
.|..+|..+
T Consensus 520 ~a~~aL~~l 528 (529)
T 1jdh_A 520 YAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999888654
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.56 E-value=6.4e-06 Score=107.35 Aligned_cols=375 Identities=11% Similarity=0.120 Sum_probs=234.9
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccC--cc-----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~--~~-----~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~ 676 (2013)
+++++.+.|.+-..++.|+..+.+++..... .+ ...+.|+++|. .+.|..++..+..+|..++.....
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~-----~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHcCCHH
Confidence 6788999999999999999999988754221 11 12355666663 345677888888888888753211
Q ss_pred CchhhH-HHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhC--hhH-----HHHHHHHHhhhCC----ChhHHHHHHHHH
Q 000159 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGF-----IFERLYKIMKDHK----NPKVLSEGILWM 742 (2013)
Q Consensus 677 ~~~~~~-~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~--~~~-----Vl~~L~~~l~~~K----npKv~~~~l~~L 742 (2013)
.....+ .-++|.|+.-+.+ ..++..|..+|..++.... -.. +++.++..+.... ...+...++..+
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 111111 1267888876665 4688999889988875311 111 2344444442211 222333444444
Q ss_pred HHHHHHhCCC-C-CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCC
Q 000159 743 VSAVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (2013)
Q Consensus 743 ~~li~~fG~~-~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~ 820 (2013)
+.+....... . ..+..+++.+..+ +.+.++.|+..|..+|..|...... ....+ ..
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~~~~~------------~~~~v----~~----- 291 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNE------------RIEMV----VK----- 291 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHH------------HHHHH----HT-----
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhhhhhh------------hHHHH----Hh-----
Confidence 4444321111 1 1235678888888 9999999999998888766532110 00000 00
Q ss_pred CCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC-ChhhHHHH
Q 000159 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGG 899 (2013)
Q Consensus 821 ~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~-~~~eL~~~ 899 (2013)
..+.+.|+..+.+.++.++..++..|..++... ...... .-...+..
T Consensus 292 -------------------------------~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 292 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 339 (529)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------ccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHH
Confidence 003456777888999999999999999887421 100000 01235567
Q ss_pred HHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------
Q 000159 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 970 (2013)
Q Consensus 900 L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~-------- 970 (2013)
|...|.+.+..++..|+.+++.|+..-....... -..++|.++..|.+....++..|..+|..++.....+
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 7778888899999999999999885322222222 2358999999999999999999999999888765422
Q ss_pred hhHHHHHHHHhcCCCChhhHHHHHHHHHHHhcc---CCCCCChhhh------HHHHHhhcCCCChHHHHHHHHHHHHH
Q 000159 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 971 ~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~---~~~~~~~~~l------l~pl~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
.+++.+...|.++ ++.++..++..|...+.. .+....+..+ +..|-....+.|.+|++.|...+..+
T Consensus 420 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 420 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2467788888765 578888777777665532 2211111112 22234455789999999988777655
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.54 E-value=4.3e-06 Score=108.45 Aligned_cols=376 Identities=11% Similarity=0.120 Sum_probs=234.5
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhcc--Ccch-----HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQ--NLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 675 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~--~~~~-----~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~ 675 (2013)
-+++++.+.|.|-..++.|...+.+++.... +.+. ..+.|+++|. .+.|..++..+.-+|..++....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~-----~~~~~~lq~~Aa~aL~nias~~~ 133 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTS 133 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCH
Confidence 3788999999999999999999998875422 1111 2345566553 24467788888888888875321
Q ss_pred CCchhhHH-HHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhC--hhH-----HHHHHHHHhhhC----CChhHHHHHHHH
Q 000159 676 KFPKKCVV-LCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGF-----IFERLYKIMKDH----KNPKVLSEGILW 741 (2013)
Q Consensus 676 ~~~~~~~~-~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~--~~~-----Vl~~L~~~l~~~----KnpKv~~~~l~~ 741 (2013)
......+. -.+|.|+.-+.+ ..++..|..+|..++.... -+. .+..++..+... ....+...++..
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 11111111 268888887765 4689999999998875321 111 234444444211 122334445555
Q ss_pred HHHHHHHhCCC-CC-ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCC
Q 000159 742 MVSAVEDFGVS-HL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (2013)
Q Consensus 742 L~~li~~fG~~-~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~ 819 (2013)
+..+...-... .+ .+..+++.+..+ +.+.++.|+..|..++..|.... . .....+ ..
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~A~~aL~~L~~~~--~----------~~~~~i----~~---- 272 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGP--N----------ERIEMV----VK---- 272 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSC--H----------HHHHHH----HT----
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHHhhch--h----------hhHHHH----Hh----
Confidence 55544321111 11 235688888888 99999999999998887664211 0 000000 00
Q ss_pred CCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHH
Q 000159 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFG 898 (2013)
Q Consensus 820 ~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-~~eL~~ 898 (2013)
..+.+.|+..+.+.++.++..++..|..++... ....... -...+.
T Consensus 273 --------------------------------~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~ 319 (510)
T 3ul1_B 273 --------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALA 319 (510)
T ss_dssp --------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGG
T ss_pred --------------------------------cccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchH
Confidence 003456778888999999999999999886421 0000000 023455
Q ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch-------
Q 000159 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD------- 970 (2013)
Q Consensus 899 ~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~------- 970 (2013)
.|...|.+.+..++..|+.+++.|+..-....... -..++|.++..|.+....+|..|..+|..+......+
T Consensus 320 ~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~ 399 (510)
T 3ul1_B 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399 (510)
T ss_dssp GCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 66677888999999999999999874322222222 2358899999999999999999999999888765422
Q ss_pred -hhHHHHHHHHhcCCCChhhHHHHHHHHHHHhcc---CCCCCChhhhH------HHHHhhcCCCChHHHHHHHHHHHHH
Q 000159 971 -KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHLL------KPASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 971 -~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~---~~~~~~~~~ll------~pl~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
.+++.+...|.++ ++.++..++..|...+.. .+....+..++ ..|-.+..+.|.+|++.|...+..+
T Consensus 400 ~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 400 CGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp TTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3466778888765 577888877777665542 22211122221 2233445788999999888776554
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.49 E-value=0.025 Score=79.69 Aligned_cols=510 Identities=11% Similarity=0.062 Sum_probs=268.1
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcc----hhhhHhHHH
Q 000159 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF----SGSSRFLLP 369 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f----~~~~~~llp 369 (2013)
+-+.+=..|++|-+.|..+-+.|. .+.-+...|.. +.+..++..|+.++....+.--..+ ..+++..+-
T Consensus 25 ~~~p~~~~r~~Ae~~L~~~~~~p~----~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll 97 (1049)
T 3m1i_C 25 FYQGSGVQQKQAQEILTKFQDNPD----AWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVV 97 (1049)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHSTT----GGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHhCch----HHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHH
Confidence 334444579999999988866552 12223333322 5678899999999988776421222 233333332
Q ss_pred HHHHHhc-cC-----cHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC---h---
Q 000159 370 VLLEKLK-EK-----KPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS---K--- 436 (2013)
Q Consensus 370 ~LL~klk-dk-----k~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~---~--- 436 (2013)
..+.... +. .+.|+..+..++..++.+ .....++++++|...++ .++..+..++.+|..+.+... .
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~ 176 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQM 176 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTS
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 2222222 21 368899999999999987 22345789999988886 566667777777766553221 0
Q ss_pred ---------hHHHHhhhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCch------hHHHHHhhc--cHHHHHHHHH
Q 000159 437 ---------AAVLKVHKDYVPICMECLNDG-TPEVRDAAFSVLAAIAKSVGMR------PLERSIEKL--DDVRRNKLSE 498 (2013)
Q Consensus 437 ---------~~l~~~l~~l~p~l~k~l~Ds-~~~VR~aA~~al~~l~~~~Ge~------~~~~~l~~L--d~~~~kki~e 498 (2013)
..+...++.+...+..++++. ++++|.++.+|+..+...+.-. .+.-++..+ ++.-+...-+
T Consensus 177 ~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~~a~~ 256 (1049)
T 3m1i_C 177 TQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCCHhHHHHHHH
Confidence 223344667777778887653 5789999999998776544321 111111111 1211111112
Q ss_pred HHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCC
Q 000159 499 MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLT 578 (2013)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~ 578 (2013)
++.... + .+.+
T Consensus 257 ~L~~i~--------------------------------------~-~~~~------------------------------ 267 (1049)
T 3m1i_C 257 CLTEVS--------------------------------------N-LKIP------------------------------ 267 (1049)
T ss_dssp HHHHHH--------------------------------------H-CCCC------------------------------
T ss_pred HHHHHH--------------------------------------h-CCCC------------------------------
Confidence 211100 0 0000
Q ss_pred CCCCCCCCCCCCHHH-H-------HHHhhc-cCcHH--HHhhh---cCCCHHHHHHHHHHHHHH-------HHhccCcch
Q 000159 579 EAPEDVEPSEMSLEE-I-------ESRLGS-LIPAD--TVGQL---KSAVWKERLEAISSLRQQ-------VEAVQNLDQ 637 (2013)
Q Consensus 579 ~~~~~~~~~~~S~ee-~-------e~~~~~-~l~~~--l~~~L---~s~~Wk~Rl~ale~L~~~-------v~~~~~~~~ 637 (2013)
+...-.++ + -..+.. +++.. +...+ .+.++..+..-.+-+..+ +...+....
T Consensus 268 -------~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (1049)
T 3m1i_C 268 -------QDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE 340 (1049)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred -------cchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHH
Confidence 00000000 0 000000 11100 00000 111121111111111111 111111111
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc---C---CCchhhHHHHHHHHHhhhcC----------h-----
Q 000159 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---T---KFPKKCVVLCLLGISERVAD----------I----- 696 (2013)
Q Consensus 638 ~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~---~---~~~~~~~~~il~~LveKlgD----------~----- 696 (2013)
....++.++..... ..+..|...++++|..+++.. + ......+..+++.++.++.- .
T Consensus 341 ~l~~~l~~ll~~~~--~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r 418 (1049)
T 3m1i_C 341 LLLNAHQYLIQLSK--IEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVR 418 (1049)
T ss_dssp HHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchH
Confidence 22233333321111 124567888999999888732 1 22344667777888877621 1
Q ss_pred ---------hhhHHHHHHHHHHHhhhChhHHHHHHHHHhh---h--CCChhHHHHHHHHHHHHHHHhCCCCC-C-hhhHH
Q 000159 697 ---------KTRAHAMKCLTTFSEAVGPGFIFERLYKIMK---D--HKNPKVLSEGILWMVSAVEDFGVSHL-K-LKDLI 760 (2013)
Q Consensus 697 ---------K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~---~--~KnpKv~~~~l~~L~~li~~fG~~~l-~-~k~li 760 (2013)
-.+..+.++|..++.. .+..+++.+++.+. . ..+|+.+.+++..++.+.+..+...- . +..++
T Consensus 419 ~~~~d~d~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~ 497 (1049)
T 3m1i_C 419 EFVKESDTIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVI 497 (1049)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHH
Confidence 1244678888888854 44555555555431 1 46899999999888866543221100 1 23455
Q ss_pred HHHHhcCCC-----CCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccC
Q 000159 761 DFCKDTGLQ-----SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (2013)
Q Consensus 761 ~~l~~~gL~-----~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~ 835 (2013)
+.+..+ .. +..+.||..+..+++.+..|+... ..||. .
T Consensus 498 ~~l~~l-~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~-------~---------------------------- 540 (1049)
T 3m1i_C 498 KDLLDL-TVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLR-------T---------------------------- 540 (1049)
T ss_dssp HHHHHH-TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHH-------H----------------------------
T ss_pred HHHHHH-HhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHH-------H----------------------------
Confidence 555443 22 234566666777777766554321 01110 0
Q ss_pred CCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCC--------CCChhhHHHHHHhcccch
Q 000159 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ--------PAGTGELFGGLRGRLYDS 907 (2013)
Q Consensus 836 s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~--------~~~~~eL~~~L~~rL~Ds 907 (2013)
+.+.++..+.+.+-++|..|...+..++..+...+. |. +.+|+..|...+.+.
T Consensus 541 ------------------vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~-~~~il~~l~~~~~~~ 601 (1049)
T 3m1i_C 541 ------------------VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF-IQTIIRDIQKTTADL 601 (1049)
T ss_dssp ------------------HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH-HHHHHHTHHHHHTTS
T ss_pred ------------------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcH-HHHHHHHHHHHHHhC
Confidence 122455556677788899999999999987644432 33 467777776666543
Q ss_pred hHHHHHHHHHHHHHHHHHhCh--hhHhhhhhHHHHHHHHhC
Q 000159 908 NKNLVMATLITLGAVASAMGP--AVEKSSKGVLSDILKCLG 946 (2013)
Q Consensus 908 N~~V~~~Al~~l~~La~alg~--~~~~~~~~llp~ll~~L~ 946 (2013)
...-....+++++.++.+.+. .+.+|+..+++.++..+.
T Consensus 602 ~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~ 642 (1049)
T 3m1i_C 602 QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWD 642 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333345667889999988883 477889999888876654
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00029 Score=93.22 Aligned_cols=241 Identities=11% Similarity=0.054 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHH
Q 000159 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (2013)
Q Consensus 733 Kv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (2013)
-|..+|+..+..+ +...--++..+..+..+ +.++++++|-.|...+..+....+. . .+
T Consensus 308 aVl~ea~~~i~~l----~~~~~~~~~~~~~L~~~-L~~~~~niry~aL~~l~~l~~~~~~-~-~~--------------- 365 (621)
T 2vgl_A 308 AVLFEAISLIIHH----DSEPNLLVRACNQLGQF-LQHRETNLRYLALESMCTLASSEFS-H-EA--------------- 365 (621)
T ss_dssp HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH-SSCSCHHHHHHHHHHHHHHTTCTTT-H-HH---------------
T ss_pred HHHHHHHHHHHhc----CCcHHHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHHhccCc-H-HH---------------
Confidence 5666666655443 22110123455666677 8888999999999888776432110 0 00
Q ss_pred HhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcC-CCChHHHHHHHHHHHHHHHhccccCCCC
Q 000159 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPA 891 (2013)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~-d~~Wk~R~eale~l~~il~~a~~~I~~~ 891 (2013)
+ ......++..+. |.+-.+|..+++.+..++.+.
T Consensus 366 ~--------------------------------------~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~------- 400 (621)
T 2vgl_A 366 V--------------------------------------KTHIETVINALKTERDVSVRQRAVDLLYAMCDRS------- 400 (621)
T ss_dssp H--------------------------------------HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-------
T ss_pred H--------------------------------------HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh-------
Confidence 0 001235666677 888889999999999887643
Q ss_pred ChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-c-
Q 000159 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L- 969 (2013)
Q Consensus 892 ~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-l- 969 (2013)
+..+++..|...+.+.+..++..++..|+.+|....+.+..|+..++ +.+.+....+.+.+...+..++.... +
T Consensus 401 Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll----~ll~~~~~~v~~ev~~~l~~ii~~~~~~~ 476 (621)
T 2vgl_A 401 NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTIL----NLIRIAGDYVSEEVWYRVIQIVINRDDVQ 476 (621)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHH----HHHHHHGGGSCSHHHHHHHHHHGGGCSCH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH----HHHHhhcccchHHHHHHHHHHHhCChhHH
Confidence 25788888888888888899999999999999887777766655444 33333333355555556666655443 2
Q ss_pred hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhcc-CCCCCC--hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000159 970 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG-LSGFPD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2013)
Q Consensus 970 ~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~-~~~~~~--~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~ 1045 (2013)
...+..+.+.+.++... ..=..+..|+..-+.. ....+. ..+.+..+...+.+.++.||..+-.++..+....++
T Consensus 477 ~~~~~~l~~~l~~~~~~-~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~ 554 (621)
T 2vgl_A 477 GYAAKTVFEALQAPACH-ENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE 554 (621)
T ss_dssp HHHHHHHHHHHTSSSCC-HHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHcCccch-HHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH
Confidence 22345566777654211 1111233465332221 111111 134566677788899999999999999888777653
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.48 E-value=2.1e-05 Score=102.01 Aligned_cols=380 Identities=12% Similarity=0.117 Sum_probs=237.9
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC-CCh--HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDF--TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~-~~~--~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (2013)
+++.+.+.+.+-..+.+|+..++++++..+-.+ ... ..+++.|.+.|+ +.+..+...|+.+|..||.+-...-...
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 467888999999999999999999885332222 000 135778888887 6678899999999999996533222222
Q ss_pred hH-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHhhcCC-----hHHHHHHHHHHHHHH
Q 000159 364 SR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKV-----PLVRSLTLNWVTFCI 431 (2013)
Q Consensus 364 ~~-~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~------~il~~l~~~l~~Kn-----p~vR~~~l~~L~~~l 431 (2013)
+. ..+|.|+..+++....|++.+..||..+... +.... ..++.+...+...+ ..+...++..|..+.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d-~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 22 4799999999999999999999999998754 11111 23456666665433 233444444444433
Q ss_pred HhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000159 432 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511 (2013)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~ 511 (2013)
.......-......++|.|.+++.+.+++|+..|..+|..+... .. .....+ ...
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~~-----------~~~~~i---~~~--------- 273 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PN-----------ERIEMV---VKK--------- 273 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CH-----------HHHHHH---HTT---------
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--hh-----------hhHHHH---Hhc---------
Confidence 32211111123467899999999999999999998888655421 11 001111 000
Q ss_pred CCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH
Q 000159 512 SSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL 591 (2013)
Q Consensus 512 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ 591 (2013)
T Consensus 274 -------------------------------------------------------------------------------- 273 (510)
T 3ul1_B 274 -------------------------------------------------------------------------------- 273 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHH--HHhcC-CCCcccHHHHHHHHHHHHH
Q 000159 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR--LVCML-PGWSEKNVQVQQQVIEVIN 668 (2013)
Q Consensus 592 ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~--~L~~~-pgl~DsN~qV~~~~Le~l~ 668 (2013)
-+.+.++..|.+.++..+..++..|..+....+. ....++. .+... .-+.+.+..|+..++-+|.
T Consensus 274 ---------g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~---~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 274 ---------GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE---QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp ---------TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH---HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred ---------ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH---HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0013456677888888888888888877543221 1222221 11000 1245677788888888887
Q ss_pred HHHHHcCCCchhh-HHHHHHHHHhhhc--ChhhhHHHHHHHHHHHhhhChhH--------HHHHHHHHhhhCCChhHHHH
Q 000159 669 YLAATATKFPKKC-VVLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKVLSE 737 (2013)
Q Consensus 669 ~l~~~~~~~~~~~-~~~il~~LveKlg--D~K~r~~a~e~L~~l~e~~~~~~--------Vl~~L~~~l~~~KnpKv~~~ 737 (2013)
.++.......... -..++|.|+.-+. +.++|..|..+|..++....++. +++.|+..+ ..++++++..
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d~~i~~~ 420 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQV 420 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCCHHHHHH
Confidence 7654211111111 1235677777664 45788888889988887655443 245556654 7889999999
Q ss_pred HHHHHHHHHHHhCCCC-C-Chh------hHHHHHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 738 GILWMVSAVEDFGVSH-L-KLK------DLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 738 ~l~~L~~li~~fG~~~-l-~~k------~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
++..|..+++...... . ... ..++.+..+ ..|.|..|++.|..++-..|
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 9999998886321110 0 011 134456666 67899999999999875544
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.46 E-value=3.1e-05 Score=100.80 Aligned_cols=377 Identities=12% Similarity=0.113 Sum_probs=234.6
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCC-Ch--HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DF--TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~-~~--~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (2013)
+.+.+.+.+.+-..+.+|+..++++++..+-.+- .. ..+++.|.+.+. +.+..+...|+.+|..|+.+-...-...
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3678888999999999999999998853322220 01 246677888887 6778899999999999997543222212
Q ss_pred -hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHhhcCC-----hHHHHHHHHHHHHHH
Q 000159 364 -SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKV-----PLVRSLTLNWVTFCI 431 (2013)
Q Consensus 364 -~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~------~il~~l~~~l~~Kn-----p~vR~~~l~~L~~~l 431 (2013)
-...+|.|+..+......|++.+..||..+... +.... ..++.++..+...+ ..+...++..|..+.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 225789999999999999999999999988754 11111 13456666665433 223334444444433
Q ss_pred HhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000159 432 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511 (2013)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~ 511 (2013)
.......-......++|.|.+++.+.+++|+..|+.+|..+... .. .....+ +..
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~~-----------~~~~~v---~~~--------- 292 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PN-----------ERIEMV---VKK--------- 292 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CH-----------HHHHHH---HTT---------
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--hh-----------hhHHHH---Hhc---------
Confidence 22211111123467899999999999999999888777655421 11 001111 000
Q ss_pred CCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH
Q 000159 512 SSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL 591 (2013)
Q Consensus 512 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ 591 (2013)
T Consensus 293 -------------------------------------------------------------------------------- 292 (529)
T 3tpo_A 293 -------------------------------------------------------------------------------- 292 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc------hHHHHHHHHHhcCCCCcccHHHHHHHHHH
Q 000159 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIE 665 (2013)
Q Consensus 592 ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~------~~~~~lv~~L~~~pgl~DsN~qV~~~~Le 665 (2013)
-+.+.++..|.+.++..+..++..|..++...+... ...+.++.+| .+.+..|...++-
T Consensus 293 ---------g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL------~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 293 ---------GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL------TNPKTNIQKEATW 357 (529)
T ss_dssp ---------TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT------TCSSHHHHHHHHH
T ss_pred ---------cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH------cCCCHHHHHHHHH
Confidence 001345566777888888888888877654321110 0122344443 4556678888888
Q ss_pred HHHHHHHHcCCCchhh-HHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhChhH--------HHHHHHHHhhhCCChhH
Q 000159 666 VINYLAATATKFPKKC-VVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKV 734 (2013)
Q Consensus 666 ~l~~l~~~~~~~~~~~-~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~~--------Vl~~L~~~l~~~KnpKv 734 (2013)
+|..++.......... -..++|.|+.-+.+ .+++..|.-+|..++....++. +++.|+..+ ..+++++
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL-~~~d~~i 436 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKI 436 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCSCHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh-cCCCHHH
Confidence 8877764211111111 12357777766554 5788888888888877655443 245566654 6889999
Q ss_pred HHHHHHHHHHHHHHhCCCC-C-Chhh------HHHHHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 735 LSEGILWMVSAVEDFGVSH-L-KLKD------LIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 735 ~~~~l~~L~~li~~fG~~~-l-~~k~------li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
+..++..|..++....... . .+.. .++.+..+ ..|.|..|++.|..++-..|
T Consensus 437 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 437 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 9999999988875321110 0 0111 24455666 77899999999998875443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.44 E-value=4e-06 Score=95.04 Aligned_cols=182 Identities=20% Similarity=0.176 Sum_probs=137.3
Q ss_pred chHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh
Q 000159 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (2013)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (2013)
.+.|+..+.|.+|.+|..|++.|..+-. .+.++.|...|.|.+..|+..|+.+++.+..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------- 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 4578889999999999999998876421 4677888889999999999999999887641
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhH
Q 000159 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014 (2013)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll 1014 (2013)
...++.++..|.|..+.||.++..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....+
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~~ 145 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DERAV 145 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-C-------CGGGH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHhCC--CHHHHHHHHHHHHHc-C-------CHHHH
Confidence 34678899999999999999999998766 4456788899999876 689999999888764 1 13466
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcC
Q 000159 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (2013)
Q Consensus 1015 ~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~ 1071 (2013)
..+...|.|.++.||..|..+|..+-..-..+.+...+++=++..+......+.+.+
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 778889999999999999999987632111223444444444555555555555543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.1e-06 Score=93.45 Aligned_cols=177 Identities=21% Similarity=0.204 Sum_probs=135.1
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
..+.+++.+.|.+|.+|..|++.|..+-. .+.+..|...|.|.+..|+..|+..++.+. .
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----~----- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D----- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-----
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C-----
Confidence 45678999999999999999999876421 356788888889999999999999888763 1
Q ss_pred hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhh
Q 000159 934 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013 (2013)
Q Consensus 934 ~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~l 1013 (2013)
...++.++..|.|..+.||..|..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~ 139 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DERA 139 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-T-------CGGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh-C-------CHHH
Confidence 24678899999999999999999999775 4456788889999876 689999999888764 1 1456
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhH----HHHHhccCChHHHHHHHHHHHh
Q 000159 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQET----IEKNLKDIQGPALALILERIKL 1069 (2013)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~----~~~~l~~L~~~~~~~i~~~l~k 1069 (2013)
+..+...+.|.++.||..|..+|..+ |... +...+.+=++..+......+.+
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh----CchhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 67788999999999999999999877 4332 3333333344444444444444
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-06 Score=95.32 Aligned_cols=179 Identities=18% Similarity=0.163 Sum_probs=135.1
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
+.+...+.+.+|..|..|+..|..+.. .+.++.|...+.|.+..|+..|+.+|+.+.. ...
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~ 82 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 82 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 357777899999999999999988742 2467778888999999999999999988742 356
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000159 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (2013)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (2013)
++.|++.+++..+.||.++..+|..+. -...++.|...+++.++.+|..++..|..+- . +..+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-------~~~~ 145 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIG------DERAVEPLIKALKDEDWFVRIAAAFALGEIG----D-------ERAV 145 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C-------HHHH
Confidence 788999999999999998888887552 2457788889999999999999999987751 1 3467
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhc
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~ 502 (2013)
+.+..+++|.++.||.+|..+|+.+..--.-..+..++..=++.-|....+.+..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8899999999999999999999876321111123333333345445554555544
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.40 E-value=0.039 Score=77.79 Aligned_cols=534 Identities=10% Similarity=0.079 Sum_probs=267.1
Q ss_pred hHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-
Q 000159 323 FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN- 400 (2013)
Q Consensus 323 ~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~- 400 (2013)
+..++..+...+. ..+..++..+++|+..+..-....+ -.-..+++.+++.+- ..+.++.++.+|+..++......
T Consensus 192 ~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~ 269 (1049)
T 3m1i_C 192 FEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY-IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQD 269 (1049)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcc
Confidence 4556666667776 4466788888888877654222111 011235666664443 26789999999999998752111
Q ss_pred ---hH----hHHHHHHHHhhc------------------CChHHHHHHHHHHHHHHHhcCh-----hHHHHhhhhHHHHH
Q 000159 401 ---LV----DVVEDVKTSVKN------------------KVPLVRSLTLNWVTFCIETSSK-----AAVLKVHKDYVPIC 450 (2013)
Q Consensus 401 ---l~----~il~~l~~~l~~------------------Knp~vR~~~l~~L~~~l~~~~~-----~~l~~~l~~l~p~l 450 (2013)
+. .+++.++..++. .........+.++..+++.+.. ..+...+..+++.+
T Consensus 270 ~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 349 (1049)
T 3m1i_C 270 NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence 11 222333332211 1233334455555544433211 11234457788888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHh----C-chhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCC
Q 000159 451 MECLNDGTPEVRDAAFSVLAAIAKSV----G-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 525 (2013)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~al~~l~~~~----G-e~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~ 525 (2013)
..+....+.+|+..+.+....+...+ . ...+.+++..|-+ -++.+..-
T Consensus 350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~-------~ll~~m~~-------------------- 402 (1049)
T 3m1i_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRL-------VIIENMVR-------------------- 402 (1049)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHH-------HHHHTCCC--------------------
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH-------HHHHhcCC--------------------
Confidence 88888889999999988777777632 1 1223344433322 22222100
Q ss_pred CCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHH---------HHH
Q 000159 526 VEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE---------IES 596 (2013)
Q Consensus 526 ~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee---------~e~ 596 (2013)
|+... -. . .++.+.+.+..-..|+ +-.
T Consensus 403 ~ed~~--~~--------~----------------------------------dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 403 PEEVL--VV--------E----------------------------------NDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp CTTCC--EE--------E----------------------------------CTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred Cccee--ee--------e----------------------------------CCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 00000 00 0 0000001011111111 111
Q ss_pred HhhccCcHH--------HHhhhc--CCCHHHHHHHHHHHHHHHHhccCc-c-hHHHHHHHHHhcCCCC---cccHHHHHH
Q 000159 597 RLGSLIPAD--------TVGQLK--SAVWKERLEAISSLRQQVEAVQNL-D-QSVEILVRLVCMLPGW---SEKNVQVQQ 661 (2013)
Q Consensus 597 ~~~~~l~~~--------l~~~L~--s~~Wk~Rl~ale~L~~~v~~~~~~-~-~~~~~lv~~L~~~pgl---~DsN~qV~~ 661 (2013)
.+..+.+.+ +.+.+. +.+|+.|.+++-.++.+.+..... . .....++..|...|.+ +|.+..|..
T Consensus 439 ~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~ 518 (1049)
T 3m1i_C 439 YLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVAS 518 (1049)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHH
Confidence 112222322 222333 479999999999998665432211 1 1134445544322333 245666665
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhChhHH----------HHHHHHHh---
Q 000159 662 QVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFI----------FERLYKIM--- 726 (2013)
Q Consensus 662 ~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~~V----------l~~L~~~l--- 726 (2013)
.++.++..+.+-... ....+..+++.+++.+.| ++++..|..+|..+++.++...+ ++.++..+
T Consensus 519 ~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~ 597 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKT 597 (1049)
T ss_dssp HHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 677777755442211 234677888888888887 57999999999999998765433 55555533
Q ss_pred hhCCChhHHHHHHHHHHHHHHHhCC-CCC-C-hhh----HHHHHHhcCCC----C---C-cHh-HHH--HHHHHHHHHHH
Q 000159 727 KDHKNPKVLSEGILWMVSAVEDFGV-SHL-K-LKD----LIDFCKDTGLQ----S---S-AAA-TRN--ATIKLLGALHK 788 (2013)
Q Consensus 727 ~~~KnpKv~~~~l~~L~~li~~fG~-~~l-~-~k~----li~~l~~~gL~----~---~-n~~-VR~--aA~~ll~~Ly~ 788 (2013)
...-..+......+.+..++...|. ... . +.. ++..+... +. + . +++ ++. ...+++..+..
T Consensus 598 ~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~ 676 (1049)
T 3m1i_C 598 TADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI-VEQSTANPTLLLDSETVKIIANIIKTNVAVCT 676 (1049)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHH-HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhchhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 2233455566667777777766552 100 0 111 22111111 11 0 0 222 232 22445666677
Q ss_pred hhChhHHhhhhhccHHHHHHHHHH---HhhC-CCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCC
Q 000159 789 FVGPDIKGFLADVKPALLSALDAE---YEKN-PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES 864 (2013)
Q Consensus 789 ~~G~~l~~~L~~lkp~ll~~Le~e---f~k~-~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d 864 (2013)
.+|..+.+++..+-+..+..+..- ++.. ...+++. . .-|.+.....+.+.+
T Consensus 677 ~l~~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~-~------------------~~p~~~~~~~~~~~l------ 731 (1049)
T 3m1i_C 677 SMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIA-T------------------KTPKVRGLRTIKKEI------ 731 (1049)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG-G------------------GSHHHHHHHHHHHHH------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchh-h------------------hhHHHHHHHHHHHHH------
Confidence 888887777655444333222211 1100 0000000 0 000000000011111
Q ss_pred CChHHHHHHHHHHHHHHHhcccc----CCCCChhhHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHhChhhHhhhhhHH
Q 000159 865 PDWKVRLESIEAVNKILEEANKR----IQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2013)
Q Consensus 865 ~~Wk~R~eale~l~~il~~a~~~----I~~~~~~eL~~~L~~rL~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~ll 938 (2013)
+..+...+... .. ..+. ..+++..+...+.. +..+. ..++.+++.++..+|..+.+|+..++
T Consensus 732 ---------~~ll~~~~~~~-~~l~~~~~~~-~~~~l~~ll~~~~~~~~~~~~-~~~l~l~~~ii~~~~~~~~~~l~~i~ 799 (1049)
T 3m1i_C 732 ---------LKLVETYISKA-RNLDDVVKVL-VEPLLNAVLEDYMNNVPDARD-AEVLNCMTTVVEKVGHMIPQGVILIL 799 (1049)
T ss_dssp ---------HHHHHHHHHHC-SCHHHHHHHT-HHHHHHHHHHHHHHSCGGGCC-THHHHHHHHHHHHHGGGCHHHHHHHH
T ss_pred ---------HHHHHHHHHhC-CCHHHHHHHH-HHHHHHHHHHHHHhCCccccc-HHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 11122222110 00 0011 12233333222211 11111 45889999999999999999998888
Q ss_pred HHHHHHh-----C--CCcHHHHHHHHHHHHHHHHhcC
Q 000159 939 SDILKCL-----G--DNKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 939 p~ll~~L-----~--D~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
..++.+. + +..+.+|......+..++.++.
T Consensus 800 ~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~ 836 (1049)
T 3m1i_C 800 QSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSF 836 (1049)
T ss_dssp HHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCH
Confidence 8887774 3 4678899999999999998875
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-05 Score=93.29 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=65.3
Q ss_pred HHHHHhhhcC--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 000159 686 LLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (2013)
Q Consensus 686 l~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l 763 (2013)
++.|+..+.| ..+|..|..+|..+. ...+++.+...+ .+.++.+|..++..|.. +|...-.+..+++.+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~----l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEFC-SDKNYIRRDIGAFILGQ----IKICKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHHH-TCSSHHHHHHHHHHHHH----SCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----CchHHHHHHHHH-cCCCHHHHHHHHHHHHH----hccccccchHHHHHH
Confidence 5566666665 357777777777654 345677777765 68899999998877754 443222345566776
Q ss_pred H-hcCCCCCcHhHHHHHHHHHHHHHH
Q 000159 764 K-DTGLQSSAAATRNATIKLLGALHK 788 (2013)
Q Consensus 764 ~-~~gL~~~n~~VR~aA~~ll~~Ly~ 788 (2013)
. .+ +.+.++.||..|..+|+.+..
T Consensus 96 ~~~~-~~d~~~~vr~~a~~aL~~l~~ 120 (280)
T 1oyz_A 96 NNMA-LNDKSACVRATAIESTAQRCK 120 (280)
T ss_dssp HHHH-HHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-hcCCCHHHHHHHHHHHHHHhc
Confidence 5 34 788999999999999998864
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.4e-06 Score=93.96 Aligned_cols=149 Identities=20% Similarity=0.192 Sum_probs=123.9
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
+.+.+.+.+.+|..|..|+..|..+.. ...+..|.+.+.|.+..|+..|+.+|+.+.. ...
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~ 77 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 77 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 568888999999999999999987642 2356777788899999999999999987642 256
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000159 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (2013)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (2013)
++.|++.+.+..+.||..+..+|..+. -...++.|...+++.++.+|..++..|..+- -+..+
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~ 140 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIG------DERAVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAV 140 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----------CGGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CHHHH
Confidence 788999999999999998888887652 2457888889999999999999999887641 14567
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
+.+..++.|.++.||.+|..+|+.+
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999877
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-05 Score=95.60 Aligned_cols=223 Identities=14% Similarity=0.141 Sum_probs=158.2
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh
Q 000159 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2013)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2013)
++.++..+ .+.++.+|..++..|..+ |. ...++.+..+ +.+.++.||..|..+|+.+. ..-
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~----~~-----~~~~~~L~~~-l~d~~~~vR~~A~~aL~~l~----~~~---- 85 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLR----GG-----QDAVRLAIEF-CSDKNYIRRDIGAFILGQIK----ICK---- 85 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHH----CC-----HHHHHHHHHH-HTCSSHHHHHHHHHHHHHSC----CCT----
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHcc----CC-----chHHHHHHHH-HcCCCHHHHHHHHHHHHHhc----ccc----
Confidence 45566664 678999999888887654 32 3466677777 89999999999998876442 100
Q ss_pred hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHH-HhcCCCChHHHHHHHHHH
Q 000159 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV-KSLESPDWKVRLESIEAV 877 (2013)
Q Consensus 799 ~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll-~~l~d~~Wk~R~eale~l 877 (2013)
. . ...+.+-+. ..+.|.+|.+|..++..|
T Consensus 86 -~-------------------------------------------~------~~~l~~~L~~~~~~d~~~~vr~~a~~aL 115 (280)
T 1oyz_A 86 -K-------------------------------------------C------EDNVFNILNNMALNDKSACVRATAIEST 115 (280)
T ss_dssp -T-------------------------------------------T------HHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred -c-------------------------------------------c------chHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 0 000111222 135678999999999999
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHH
Q 000159 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957 (2013)
Q Consensus 878 ~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~ 957 (2013)
..+.... +....++++.|...+.|.+..|+..|+..++.+.. ...+|.++..+.|.+..||..|.
T Consensus 116 ~~l~~~~-----~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~ 180 (280)
T 1oyz_A 116 AQRCKKN-----PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAA 180 (280)
T ss_dssp HHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHhccC-----CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHH
Confidence 8876421 11125678888889999999999999998886643 23678899999999999999999
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000159 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2013)
Q Consensus 958 ~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~ 1037 (2013)
.+|..+. ..-...++.+...|.++ ++.+|..++..|...- ....++.+..+|.|.+ ||..|..+|.
T Consensus 181 ~aL~~~~--~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~--------~~~~~~~L~~~l~d~~--vr~~a~~aL~ 246 (280)
T 1oyz_A 181 FAININK--YDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRK--------DKRVLSVLCDELKKNT--VYDDIIEAAG 246 (280)
T ss_dssp HHHHHHT--CCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTT--------CGGGHHHHHHHHTSSS--CCHHHHHHHH
T ss_pred HHHHhhc--cCcHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhC--------CHhhHHHHHHHhcCcc--HHHHHHHHHH
Confidence 9997762 22456788888888876 5889999998887531 2456677888888854 9999888887
Q ss_pred HH
Q 000159 1038 EI 1039 (2013)
Q Consensus 1038 ~l 1039 (2013)
.+
T Consensus 247 ~i 248 (280)
T 1oyz_A 247 EL 248 (280)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.019 Score=79.83 Aligned_cols=581 Identities=10% Similarity=0.064 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC----ChHHHHHHHHHHhc-----ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHH
Q 000159 300 SERKDAVAELTKLASTKRIAPG----DFTEVCRTLKKLIT-----DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (2013)
Q Consensus 300 keR~eaL~~L~~l~~~pki~~~----~~~~l~~~L~k~l~-----D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (2013)
..|--|+..|...++ .+... +...|-..|...+. +....|+...+.++..|+...- -..+..+++.
T Consensus 58 ~vr~fa~~~L~~~I~--~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~---p~~Wp~~i~~ 132 (980)
T 3ibv_A 58 STRLICLQTLSEKVR--EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLY---PSNWNDFFAS 132 (980)
T ss_dssp HHHHHHHHHHHHHHH--HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHT---TTTCTTHHHH
T ss_pred HHHHHHHHHHHHHHH--hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhC---cccCchHHHH
Confidence 445567777766554 44455 44444444444443 2356688888888888887642 2344455555
Q ss_pred HHHHhccCcH-HHHHHHHHHHHHHHHh-cC----------------------CChHhHHHHHHHHh----hcCChHHHHH
Q 000159 371 LLEKLKEKKP-TVAESLTQTLQAMHKA-GC----------------------LNLVDVVEDVKTSV----KNKVPLVRSL 422 (2013)
Q Consensus 371 LL~klkdkk~-~V~~aa~~aL~ai~~~-~~----------------------~~l~~il~~l~~~l----~~Knp~vR~~ 422 (2013)
++..++.... .........|..+..- .. ..+..+++.+...| .+.++.++..
T Consensus 133 l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~ 212 (980)
T 3ibv_A 133 LQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGL 212 (980)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 5555543222 1111111122211111 00 01222333333333 3478889999
Q ss_pred HHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch-hHHHHHhhccHHHHHHHHHHHh
Q 000159 423 TLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR-PLERSIEKLDDVRRNKLSEMIA 501 (2013)
Q Consensus 423 ~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~-~~~~~l~~Ld~~~~kki~e~~~ 501 (2013)
+++.|..++.-.+...+.. ..+++.+.+++.+ +++|++|.+||..+...-... .-..++..| .+.+.+.
T Consensus 213 ~L~~l~s~i~wi~~~~i~~--~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l------~L~~~~~ 282 (980)
T 3ibv_A 213 CLQVYAQWVSWININLIVN--EPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNIL------NLNLFFS 282 (980)
T ss_dssp HHHHHHHHTTTSCHHHHHC--HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH------HHHHHHC
T ss_pred HHHHHHHHHhhcCHHhhhc--chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHH------hHHHHHH
Confidence 9999998887444443322 6788999999987 899999999999998764431 111222222 1222221
Q ss_pred cCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCC
Q 000159 502 GSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAP 581 (2013)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~ 581 (2013)
... . .+
T Consensus 283 ~l~--------------------------------------~----------------------------------~~-- 288 (980)
T 3ibv_A 283 KSQ--------------------------------------E----------------------------------QS-- 288 (980)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HHh--------------------------------------c----------------------------------cc--
Confidence 100 0 00
Q ss_pred CCCCCCCCCHHHHHHHhhcc---CcHHHHhhhcCCC-H---HHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcc
Q 000159 582 EDVEPSEMSLEEIESRLGSL---IPADTVGQLKSAV-W---KERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 654 (2013)
Q Consensus 582 ~~~~~~~~S~ee~e~~~~~~---l~~~l~~~L~s~~-W---k~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~D 654 (2013)
+ . .|.-..+..+ ++++++.. .+.. | ..+..+...+. ...+.+++.+..
T Consensus 289 ~-------D-~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~----------~ll~~lL~~~~~------ 343 (980)
T 3ibv_A 289 T-------D-PNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLY----------NLFPYLIRYLSD------ 343 (980)
T ss_dssp C-------C-HHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHH----------HTHHHHHHHHTC------
T ss_pred c-------c-HHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHH----------HHHHHHHHHhCC------
Confidence 0 0 1111111111 12233222 1111 1 11212222221 123444444432
Q ss_pred cHHHHHHHHHHHHHHHHHHc---CC---Cc---hhhHHHHHHHHHhhhcC-------h-----------hhhHHHHHHHH
Q 000159 655 KNVQVQQQVIEVINYLAATA---TK---FP---KKCVVLCLLGISERVAD-------I-----------KTRAHAMKCLT 707 (2013)
Q Consensus 655 sN~qV~~~~Le~l~~l~~~~---~~---~~---~~~~~~il~~LveKlgD-------~-----------K~r~~a~e~L~ 707 (2013)
...-|...++++|..++... +. .. ...+..+++.++.|+.= . -.|.... .|.
T Consensus 344 ~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~ 422 (980)
T 3ibv_A 344 DYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQ 422 (980)
T ss_dssp SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHH
Confidence 12245556666666655432 11 11 13445555566655421 0 1355555 777
Q ss_pred HHHhhhChhHHHH----HHHHHhh------hCCChhHHHHHHHHHHHHHHHhCCCC-------CChhhHHHHHHhcCCC-
Q 000159 708 TFSEAVGPGFIFE----RLYKIMK------DHKNPKVLSEGILWMVSAVEDFGVSH-------LKLKDLIDFCKDTGLQ- 769 (2013)
Q Consensus 708 ~l~e~~~~~~Vl~----~L~~~l~------~~KnpKv~~~~l~~L~~li~~fG~~~-------l~~k~li~~l~~~gL~- 769 (2013)
..+...+++.+++ .+...+. .+.+|+.+..++..|..+-+...... -.+..+++++..+ +.
T Consensus 423 d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~l-l~s 501 (980)
T 3ibv_A 423 DTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALV-TTS 501 (980)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHH-HHS
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHH-HhC
Confidence 7778888888877 4433321 23569999999988877665332111 1123466666554 44
Q ss_pred ----CCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000159 770 ----SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2013)
Q Consensus 770 ----~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2013)
+.+|.||..+..+++..+.|+... .+.-|.
T Consensus 502 ~i~~~~hp~V~~~~~~~l~rys~~~~~~-----~~~l~~----------------------------------------- 535 (980)
T 3ibv_A 502 QVCRHPHPLVQLLYMEILVRYASFFDYE-----SAAIPA----------------------------------------- 535 (980)
T ss_dssp STTTCCCHHHHHHHHHHHHHTGGGGGTC-----CTTHHH-----------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhcC-----chhHHH-----------------------------------------
Confidence 788999999999999998876521 000011
Q ss_pred CCcccccccchHHHH--hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc----hh-----------
Q 000159 846 PREDISGKFTPTLVK--SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD----SN----------- 908 (2013)
Q Consensus 846 pr~dIs~~L~~~ll~--~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D----sN----------- 908 (2013)
+...|+. ++.+.+-++|..|.-.+..+++.+.+.+.|. ..+|+..|...|.- .+
T Consensus 536 --------~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~-~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 536 --------LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNY-TESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp --------HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSS-HHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred --------HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhH-HHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 1223444 5566677788888899999999887777765 47888888776641 00
Q ss_pred ------HHHHHHHHHHHHHHHHHhCh---hhHhhhhhHHHHHHHHhC----CCc----HH-HHHHHHHHHHHHHHhcC--
Q 000159 909 ------KNLVMATLITLGAVASAMGP---AVEKSSKGVLSDILKCLG----DNK----KH-MRECTLTVLDAWLAAVH-- 968 (2013)
Q Consensus 909 ------~~V~~~Al~~l~~La~alg~---~~~~~~~~llp~ll~~L~----D~k----~~-Vr~aa~~aL~~i~~~~g-- 968 (2013)
..=...-.+++|.|+.+++. .-..|+..++++++..+. ..+ .. -....+.+++.+.+-..
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAR 686 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSC
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcc
Confidence 11234456788888888763 334678888888776553 211 11 12234555566665431
Q ss_pred ----------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc-CC-CChHHHHHHHHHH
Q 000159 969 ----------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM-TD-KSSDVRKAAEACI 1036 (2013)
Q Consensus 969 ----------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L-~D-~~~dVR~aA~~~L 1036 (2013)
+..+++.+...|..-..+..+|..++..+.+.+..++. ++..++++++..| .+ ...+.. ..-..+
T Consensus 687 ~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~--~~~p~lp~~i~~ll~~~~~~e~~-~fL~l~ 763 (980)
T 3ibv_A 687 GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGP--DMLPKVPQLISILLNSIDMNELV-DVLSFI 763 (980)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHH--HHTTTHHHHHHHHHHHCCTTTHH-HHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH--hHHHHHHHHHHHHHhcCCHHHHH-HHHHHH
Confidence 11233334444542112477888899888888876643 2444455544432 22 122222 233466
Q ss_pred HHHHHHcChhHHHHHhccC
Q 000159 1037 VEILRAGGQETIEKNLKDI 1055 (2013)
Q Consensus 1037 ~~l~~~~G~~~~~~~l~~L 1055 (2013)
+.++..+|.+ +.+.++.|
T Consensus 764 ~qli~~f~~~-~~~~l~~l 781 (980)
T 3ibv_A 764 SQLIHIYKDN-MMEITNRM 781 (980)
T ss_dssp HHHHHHTTTT-SHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHH
Confidence 6777777877 45554433
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00012 Score=97.04 Aligned_cols=390 Identities=14% Similarity=0.096 Sum_probs=222.4
Q ss_pred HHHHhhhcC---CCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh
Q 000159 604 ADTVGQLKS---AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (2013)
Q Consensus 604 ~~l~~~L~s---~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~ 680 (2013)
.++-+.|.+ .+-..|..++..+.-+.-.+.+.....-.+++. +..+|+.....+.-.+..++ .-...
T Consensus 38 ~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl------~~s~~~~~Krl~YL~l~~~~----~~~~e 107 (621)
T 2vgl_A 38 ANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNL------LSSNRYTEKQIGYLFISVLV----NSNSE 107 (621)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHG------GGCSCHHHHHHHHHHHHHSC----CCCHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHH------hcCCCHHHHHHHHHHHHHHc----cCCcH
Confidence 456667764 377889999998876654433332222233443 34566666655554444333 22233
Q ss_pred hHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhChhHHHHHHHHHhh-hCCChhHHHHHHHHHHHHHHHhCCCCCChh
Q 000159 681 CVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGVSHLKLK 757 (2013)
Q Consensus 681 ~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~-~~KnpKv~~~~l~~L~~li~~fG~~~l~~k 757 (2013)
.+-.++..+..-+.|+ -+|..|..+|..+....-.+.+.+.+.+.+. .+.+|-||..++..+..+..... +.+...
T Consensus 108 ~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~ 186 (621)
T 2vgl_A 108 LIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMG 186 (621)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCch
Confidence 4555566666556663 4677777777766543223344444555532 68999999999999999998543 333223
Q ss_pred hHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCC-------CCCCCC------
Q 000159 758 DLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF-------EGTVVP------ 824 (2013)
Q Consensus 758 ~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~-------~~~p~p------ 824 (2013)
.+++.+..+ |.+.|+.|+.+|..++.++...-+..+. .+.|.....+..-+..... .+-+.|
T Consensus 187 ~~~~~l~~l-L~d~d~~V~~~a~~~l~~i~~~~~~~~~----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i 261 (621)
T 2vgl_A 187 DWTSRVVHL-LNDQHLGVVTAATSLITTLAQKNPEEFK----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL 261 (621)
T ss_dssp SCHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHCHHHHT----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred hHHHHHHHH-hCCCCccHHHHHHHHHHHHHHhChHHHH----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence 688888888 9999999999999999998765443222 2233333333332211000 000000
Q ss_pred cccccCccccCCCCCCCCCCCCC---cccccccc---hHHHHhcCCC----Ch-------HHHHHHHHHHHHHHHhcccc
Q 000159 825 KKTVRASESTSSVSSGGSDGLPR---EDISGKFT---PTLVKSLESP----DW-------KVRLESIEAVNKILEEANKR 887 (2013)
Q Consensus 825 ~R~~r~~~~~~s~~~~~~d~lpr---~dIs~~L~---~~ll~~l~d~----~W-------k~R~eale~l~~il~~a~~~ 887 (2013)
.+.++ .+.+ .+....+. ..++..+.+. .- -+-.|++. .++.
T Consensus 262 l~ll~--------------~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~---~i~~----- 319 (621)
T 2vgl_A 262 LRLLQ--------------CYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAIS---LIIH----- 319 (621)
T ss_dssp HHHGG--------------GSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHH---HHHH-----
T ss_pred HHHHH--------------HhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHH---HHHh-----
Confidence 00000 0000 01111111 1122221111 11 22222222 2221
Q ss_pred CCCC--ChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHH
Q 000159 888 IQPA--GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWL 964 (2013)
Q Consensus 888 I~~~--~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~ 964 (2013)
+.+. .....+..|...|.+++.+++..|+..+..|+..-+. ..++......++.+|. |....||..+.+.|..++
T Consensus 320 l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 320 HDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 1121 1234566777777778889999999999988755421 1344556778888898 999999999988888888
Q ss_pred HhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000159 965 AAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2013)
Q Consensus 965 ~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~ 1037 (2013)
..-.++.++..+...+.+. +.+.|.+++.++..+...++. +....+..++..+.+....|...+...+.
T Consensus 398 ~~~Nv~~Iv~eL~~yl~~~--d~~~~~~~v~~I~~la~k~~~--~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~ 466 (621)
T 2vgl_A 398 DRSNAQQIVAEMLSYLETA--DYSIREEIVLKVAILAEKYAV--DYTWYVDTILNLIRIAGDYVSEEVWYRVI 466 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHGGGSCSHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 7767788888888888754 478888888888776555433 23334444555555444444444443333
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-05 Score=88.63 Aligned_cols=185 Identities=13% Similarity=0.121 Sum_probs=136.5
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-h
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-S 364 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~ 364 (2013)
+.+...+.+.++..|.+|+..|..+.....-....+ ...++.|.+.+.+.+..++..|+.+|+.|+.+-...-... -
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 356677899999999999999999884321000000 1357788888998899999999999999985322111111 2
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-----hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000159 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2013)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~-----l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2013)
...+|.|+..+.+....++..+..+|..+....... -..+++.|...+++.++.+|..++..|..+....+.. .
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~ 173 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-K 173 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-H
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH-H
Confidence 357899999999999999999999999887430000 0235788889999999999999999999877643322 1
Q ss_pred HHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 440 LKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 440 ~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
... -...++.+..++.+.+++||..|..+|..+.
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 111 2357899999999999999999999998764
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.1e-05 Score=88.94 Aligned_cols=183 Identities=14% Similarity=0.150 Sum_probs=136.8
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh-
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS- 364 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~- 364 (2013)
+.|++.+.+.+...|..|+..|..++....-....+ ..+++.|.+.+.+.+..+...|+.+|+.|+.+-...-...+
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 478889999999999999999987653200000000 13567888889988899999999999999864322111222
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000159 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2013)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l-------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2013)
...+|.|+..+.+....++..+..+|..+... ... ..+++.|...+++.++.+|..++..|..+.... ..
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~ 171 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE 171 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence 24899999999999999999999999888653 111 136788889999999999999999998865433 22
Q ss_pred HHHHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 438 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 438 ~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
..... -..++|.++.++.+.+++||..|..+|+.+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 21111 2567899999999999999999999999886
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00047 Score=73.40 Aligned_cols=199 Identities=20% Similarity=0.301 Sum_probs=145.7
Q ss_pred hhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH
Q 000159 291 WEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (2013)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 369 (2013)
..-+.+.-|..++.|+.-+-.++.. -+.-|..++..|.-.+. +.-+..-.+-.+++|.+|+.=. ..++.++|
T Consensus 38 I~~LDDDlwtV~kNAl~vi~~i~~~---~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P----e~v~~vVp 110 (253)
T 2db0_A 38 IELLDDDLWTVVKNAISIIMVIAKT---REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP----ELVKSMIP 110 (253)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHH
T ss_pred HHHhccHHHHHHHhHHHHHHHHHHH---hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----HHHHhhHH
Confidence 3446889999999999999888753 12346666776666665 6667676666788888775321 35788999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2013)
.++..+.-..+.++-...-+|..++..+...+..++.+|..-+.+||-.=|..+++|+..+=.++ .+++..++|-
T Consensus 111 ~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-----~~yv~PfLpr 185 (253)
T 2db0_A 111 VLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-----FKYVNPFLPR 185 (253)
T ss_dssp HHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-----HHHHGGGHHH
T ss_pred HHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-----ccccCcchHH
Confidence 99999977788888888899999998744446778899998899999999999999987643322 2456778899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCc--hhHHHHHhhcc---HHHHHHHHHHHh
Q 000159 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGM--RPLERSIEKLD---DVRRNKLSEMIA 501 (2013)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge--~~~~~~l~~Ld---~~~~kki~e~~~ 501 (2013)
+..+|.|.|.-||..|.++|+.++..-.. +.+..-+..++ +.-++++++.+.
T Consensus 186 L~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 186 IINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp HHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred HHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999999999988754321 12233333343 334556665543
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.025 Score=78.58 Aligned_cols=617 Identities=11% Similarity=0.064 Sum_probs=311.9
Q ss_pred hhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-hhh---hHHH
Q 000159 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-AVD---VFLD 131 (2013)
Q Consensus 56 ~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~-~~~---~v~~ 131 (2013)
++..+...+|+.+..++|+|+..|+.-...+.-- ...+++.+. ++++ .+.+|+.|.+|+..++... .++ .+++
T Consensus 197 iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~-~~~ll~~l~-~~L~-~~~~r~~A~ecL~ei~~k~~~~~~k~~li~ 273 (980)
T 3ibv_A 197 MMLAYSNAKNYGTVGLCLQVYAQWVSWININLIV-NEPCMNLLY-SFLQ-IEELRCAACETMTEIVNKKMKPLEKLNLLN 273 (980)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHH-CHHHHHHHH-HHTT-SHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhh-cchHHHHHH-HHcC-ChHHHHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 3344444578899999999999999866442111 135666655 5564 5899999999999888652 222 2222
Q ss_pred HH--HHHh---h--cCChhhHHHHHHHH---HHHHHHh--CCCC----------cChhHHHHhhhhhhcCCChHHHHHHH
Q 000159 132 VM--EKAI---K--NKVAKAVVPAIDVM---FQALSEF--GAKI----------IPPKRILKMLPELFDHQDQNVRASSK 189 (2013)
Q Consensus 132 ~L--~~~~---~--~KnpKv~~~~l~~L---~~~l~~f--G~~~----------i~~k~il~~l~~ll~~~d~~VR~~a~ 189 (2013)
.| ...+ . +..+.........+ .+.+... .... -.+..+++.+..+++|.+..|=..+.
T Consensus 274 ~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~ 353 (980)
T 3ibv_A 274 ILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVF 353 (980)
T ss_dssp HHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTH
T ss_pred HHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 22 1111 1 23333322111111 1111111 1110 11356889999999999988877766
Q ss_pred HHHHHHHHhh---CC-chhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCC
Q 000159 190 GLTLELCRWI---GK-DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTAD 265 (2013)
Q Consensus 190 ~l~~ely~~l---G~-~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~ 265 (2013)
.+...+...+ .. ..+. ...++...+-++..+.+.. .. .+ ...
T Consensus 354 ~Fw~~~l~~~~~~~~~~~~~----~~~~~~l~~Ll~~li~k~~------------yp--------~d---~~~------- 399 (980)
T 3ibv_A 354 PFLSDLLVSLRKESSSKELS----ASLKEFLKSLLEAIIKKMK------------YD--------ES---QEW------- 399 (980)
T ss_dssp HHHHHHHHHHHHHTTSCCCC----HHHHHHHHHHHHHHHHTTS------------CC--------TT---CCC-------
T ss_pred HHHHHHHHHHHhcccccccc----HHHHHHHHHHHHHHHHHcc------------CC--------Cc---ccc-------
Confidence 6643322221 10 0000 0111222222233333221 00 00 000
Q ss_pred CCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHhc---cc
Q 000159 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT-----EVCRTLKKLIT---DV 337 (2013)
Q Consensus 266 ~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~-----~l~~~L~k~l~---D~ 337 (2013)
+.+.| . | | .++|.+ .+.+...+..+...+. +..+. -+...+...+. ..
T Consensus 400 -~~~~d---~-e--d------~~~F~e------~Rk~l~~l~d~~~~l~-----~~~~l~~~~~~i~~~l~~~l~~~~~~ 455 (980)
T 3ibv_A 400 -DDDPD---S-E--E------EAEFQE------MRKKLKIFQDTINSID-----SSLFSSYMYSAITSSLSTAATLSPEN 455 (980)
T ss_dssp -CCCSS---S-S--T------HHHHHH------HHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred -ccccc---h-h--H------HHHHHH------HHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 00000 0 0 0 134422 3333333333333322 11122 23334444442 34
Q ss_pred CHHHHHHHHHHHHHHHHHhhhc------chhhhHhHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHh---cCCChHh
Q 000159 338 NIAVAVEAIQAIGNLARGLRTH------FSGSSRFLLPVLLEKLK-----EKKPTVAESLTQTLQAMHKA---GCLNLVD 403 (2013)
Q Consensus 338 N~~V~~~A~~~l~~La~~L~~~------f~~~~~~llp~LL~klk-----dkk~~V~~aa~~aL~ai~~~---~~~~l~~ 403 (2013)
+=..+..|+-+++.++++++.. ..++...+++-|...+. +..+.|+..+..++...... ....+..
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~ 535 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPA 535 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHH
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 4567888999999999998752 22455566666665554 78899999888887664332 2344677
Q ss_pred HHHHHHH--HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCC---------------------CHH
Q 000159 404 VVEDVKT--SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG---------------------TPE 460 (2013)
Q Consensus 404 il~~l~~--~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds---------------------~~~ 460 (2013)
+++.++. ++.+.++.||..++..+.++.+.+.+. +.+++..++..+..++.-. ..+
T Consensus 536 ~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (980)
T 3ibv_A 536 LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFN 614 (980)
T ss_dssp HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHH
T ss_pred HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH-hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCch
Confidence 8888888 888999999999999999999887653 4455666666666655411 112
Q ss_pred HHHHHHHHHHHHHHHhCc--hhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccc
Q 000159 461 VRDAAFSVLAAIAKSVGM--RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538 (2013)
Q Consensus 461 VR~aA~~al~~l~~~~Ge--~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 538 (2013)
-+-.-++++|.+....+. +....++..|-+-...+++.++....... . ..++. + ..=..-+...+
T Consensus 615 ~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~---~--~~~~i---~--~~i~al~~lak--- 681 (980)
T 3ibv_A 615 SQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSAL---E--NIISV---Y--CSLMAIGNFAK--- 681 (980)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-----C--HHHHH---H--HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCc---c--HHHHH---H--HHHHHHHHHhc---
Confidence 355578888888888763 23445666655555556666654310000 0 00000 0 00000000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhc--CCCHH
Q 000159 539 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK--SAVWK 616 (2013)
Q Consensus 539 ~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~--s~~Wk 616 (2013)
|-+.. + . .+ .+ -.+.....+ +.+...|. .++..
T Consensus 682 -----gf~~~-------------~-----------~-----~~---~p---~~~~f~~~~-----~~il~~l~~~~~~~~ 716 (980)
T 3ibv_A 682 -----GFPAR-------------G-----------S-----EE---VA---WLASFNKAS-----DEIFLILDRMGFNED 716 (980)
T ss_dssp -----TSCSC-------------C-----------------CC---CS---HHHHHHHHH-----HHHHHHHHHSCCSHH
T ss_pred -----cCCcc-------------c-----------C-----CC---Cc---HHHHHHHHH-----HHHHHHHHhcCCcHH
Confidence 00000 0 0 00 01 112222211 22323333 46788
Q ss_pred HHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC
Q 000159 617 ERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD 695 (2013)
Q Consensus 617 ~Rl~ale~L~~~v~~~~-~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD 695 (2013)
.|.++..-+..++...+ ...+..+.++..|... +. ..-+...|.++..++..++.-....+..+++.++.++..
T Consensus 717 irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~--~~---~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~ 791 (980)
T 3ibv_A 717 IRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS--ID---MNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFS 791 (980)
T ss_dssp HHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHH--CC---TTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhc--CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887776532 2223344444443211 11 122456778888888877654555666777777776532
Q ss_pred h-----------h----hhHHHHHHHHHHHhhh------------ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHH
Q 000159 696 I-----------K----TRAHAMKCLTTFSEAV------------GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (2013)
Q Consensus 696 ~-----------K----~r~~a~e~L~~l~e~~------------~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~ 748 (2013)
. + ++..-...|..+..+. ..+.++..++.++....++-++.-|+..|.+++..
T Consensus 792 ~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~ 871 (980)
T 3ibv_A 792 SLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSL 871 (980)
T ss_dssp HTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 1 1 2222223334443321 12345666666655567888999999999999999
Q ss_pred hCCCC-CC------hhhHHHHHHhc----CCCCCcH---hHHHHHHHHHHHHHHhhChhHHhhh
Q 000159 749 FGVSH-LK------LKDLIDFCKDT----GLQSSAA---ATRNATIKLLGALHKFVGPDIKGFL 798 (2013)
Q Consensus 749 fG~~~-l~------~k~li~~l~~~----gL~~~n~---~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2013)
+|... ++ ++ +++.+-.. ++.-.|+ .|=.....++..+|...|+.+..||
T Consensus 872 ~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l 934 (980)
T 3ibv_A 872 WGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYL 934 (980)
T ss_dssp -------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 97432 21 23 44433221 1221222 3566667788888888888777776
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00015 Score=83.83 Aligned_cols=184 Identities=20% Similarity=0.172 Sum_probs=136.6
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh-hhH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 365 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 365 (2013)
.+.+.+.+.++..|..|+..|..++....-....+ ..+++.|.+.+.+.+..+...|+.+|+.|+..-...-.. .-.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 85 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 85 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence 56777888889999999999999885321000000 136778888899888999999999999998542111111 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2013)
..+|.++..+++....++..+..+|..+... .... ..+++.|...+++.++.+|..++..|..+....+ ...
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~ 163 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EAI 163 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHH
Confidence 5799999999999999999999999988743 1111 1367888899999999999999999998755332 211
Q ss_pred HH-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000159 440 LK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2013)
Q Consensus 440 ~~-~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~ 474 (2013)
.. .-..++|.++.++.+.+++||..|..+|+.+..
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 11 125588999999999999999999999988874
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=97.84 E-value=0.064 Score=74.62 Aligned_cols=198 Identities=11% Similarity=0.058 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHhhhc-chhhhHhHHHHHHHHh
Q 000159 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD--VNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKL 375 (2013)
Q Consensus 299 WkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D--~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp~LL~kl 375 (2013)
|+.=++.|..+..+... .-..-++..|.+.+.+ .+=..+..++-|+|.++.++..+ ..+++..++|.|+..+
T Consensus 430 f~~~Rd~L~~l~~l~~~-----~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~ 504 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVI-----DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLC 504 (1023)
T ss_dssp HHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHH-----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhh
Confidence 44434666666554321 1122344555555553 56778899999999999998765 6689999999999887
Q ss_pred c-----cCcHHHHHHHHHHHHHHHHh---cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH-------H
Q 000159 376 K-----EKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV-------L 440 (2013)
Q Consensus 376 k-----dkk~~V~~aa~~aL~ai~~~---~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l-------~ 440 (2013)
. |.|..|++.+.-++...... ....+..++..+..++...+|.+...++..+..+.+.+..... .
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~ 584 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 5 56777777766666543222 1123567788888888888999999999999988877664322 2
Q ss_pred HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchh-HHHHHhhccHHHHHHHHHHHh
Q 000159 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIA 501 (2013)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~-~~~~l~~Ld~~~~kki~e~~~ 501 (2013)
+++..++..+..++++-.+.-+....++++.+....+... ...++..|-+....++++..+
T Consensus 585 p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~ 646 (1023)
T 4hat_C 585 PFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVE 646 (1023)
T ss_dssp CHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHH
Confidence 4678888888898888999999999999999999998654 556777666555555555543
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00041 Score=79.99 Aligned_cols=189 Identities=17% Similarity=0.125 Sum_probs=139.7
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcC-CCCCCCC-hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh-hhH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 365 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~-pki~~~~-~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 365 (2013)
.+...+.+.+...|..++..|..+... +.....- -...++.|...+.+.+..++..|+.+|+.|+..-...... .-.
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 127 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 127 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 466667888899999999999998743 2110000 0135778888888889999999999999998532211111 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2013)
..+|.|++.+++..+.++..+..+|..+... .... ..+++.+...+.+.++.+|..++..|..+.... +...
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 205 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAI 205 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHH
Confidence 5899999999999999999999999988653 1000 236788889999999999999999998876532 2222
Q ss_pred HHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 440 LKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 440 ~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
... -..+++.+...+.+.+++||..|..+|+.+....+..
T Consensus 206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 111 1457899999999999999999999999999876654
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=97.83 E-value=5.8e-05 Score=85.11 Aligned_cols=185 Identities=17% Similarity=0.206 Sum_probs=132.6
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
..+-|...+.+.++.+|.+|+..|..+..........-.-...++.|...|.+.+..++..|+.+++.|+..-.......
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 34567788899999999999999999874211100000012577888899999999999999999999874321111122
Q ss_pred h-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCC
Q 000159 934 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (2013)
Q Consensus 934 ~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~ 1005 (2013)
. ...+|.++..|.+.+..+|..|..+|..+..... -..+++.+...|.+. ++.+|..++..|........
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCH
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCc
Confidence 1 2478999999999999999999999999874321 133678888888876 57889998888876654221
Q ss_pred CCC-C--hhhhHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000159 1006 GFP-D--AAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 1006 ~~~-~--~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~ 1040 (2013)
... . ....+..+...+.+.+.+||+.|..+|..+.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 110 1 1235566888999999999999999987663
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.6e-05 Score=87.81 Aligned_cols=184 Identities=12% Similarity=0.097 Sum_probs=135.7
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcC-CCCCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 365 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~-pki~~~~~-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 365 (2013)
.+...+.+.++..|..|+..|..+... +.....-. ...++.|...+.+.+..++..|+.+|+.|+..-....... -.
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC
Confidence 466778888899999999999998742 11100000 1267788888998899999999999999976433321222 23
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2013)
..+|.|+..+.+....|+..+..+|..+... .... ..+++.|...+++.++.+|..++..|..+.... +...
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 215 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQK 215 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 5899999999999999999999999988753 1000 235788889999999999999999999876432 2222
Q ss_pred HHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000159 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2013)
Q Consensus 440 ~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~ 474 (2013)
.... ..+++.+..++.+.+++||..|..+|+.+..
T Consensus 216 ~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 2222 3488999999999999999999999987643
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0018 Score=72.16 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=146.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
.++..+.|+|-.++..++..+++++..+++....-.+.++++.+...+.+.|-.|...|++|++.|.......=..| ..
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y-~K 115 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF-LK 115 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH-HH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH-HH
Confidence 56677899999999999999999998764444444468899999999999999999999999999998765554444 45
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHH
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2013)
++.++.....+++..++..+...++.+ +.+. ...++..+...+.++ +++++...+..+.+.......+..+..++.
T Consensus 116 l~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i~~~I~~ 192 (265)
T 3b2a_A 116 AAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGHLTLILD 192 (265)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCCGGGTTT
T ss_pred HHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 778888899999999999999999998 4444 577888888888655 689999999998876554444455677777
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHH
Q 000159 1016 PASIAMTDKSSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~L~~l~ 1040 (2013)
-+-..|...++.+++-|-.++..+.
T Consensus 193 eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 193 EIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp THHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7888898889999999987776554
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0013 Score=78.62 Aligned_cols=173 Identities=14% Similarity=0.112 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHH-HhcccCHHHHHHHHHHHHHHHHHhhhcchhhh--HhHHHHHHHH
Q 000159 300 SERKDAVAELTKLASTKRIAPGDF--TEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEK 374 (2013)
Q Consensus 300 keR~eaL~~L~~l~~~pki~~~~~--~~l~~~L~k-~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~k 374 (2013)
.+|..|++.|..++...... .++ ...++.|.. .+.+.+..|+..|+.+|+.++..-. ....++ ...+|.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna-~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHH-HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhH-HHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHH
Confidence 46788888888877432100 111 123456666 8888899999999999999986421 121221 2588999999
Q ss_pred hcc-CcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHH
Q 000159 375 LKE-KKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYV 447 (2013)
Q Consensus 375 lkd-kk~~V~~aa~~aL~ai~~~~~~~l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~ 447 (2013)
+.. ++..|+..+.-||..++.+..... ...++.|...|++.++.+|..++..|..+....+. ...... .-++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChH-HHHHHHHcCCH
Confidence 984 588999999999999886411111 13567788888999999999999999887765332 111111 4588
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
|.|+.+|.+.++.||+.|..+|+.+...
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999865
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.004 Score=69.45 Aligned_cols=180 Identities=14% Similarity=0.134 Sum_probs=140.3
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
+++.+.+.+++=+.-..|++.|..|+.+.-+.+++|..+..+|...+++.|-.+...|+..++.+ ......+.+
T Consensus 78 d~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V 151 (265)
T 3b2a_A 78 DVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLV 151 (265)
T ss_dssp HHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHH
Confidence 35666677787777788999999998776688889999999999999999999999888888776 233445667
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh
Q 000159 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (2013)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~ai~~~~--~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~ 445 (2013)
+..++..++.++..|..++..++..+..++ .-.+..++..|..-+++++|.++.-++..+.+++...-...+...+..
T Consensus 152 ~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~ 231 (265)
T 3b2a_A 152 RTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK 231 (265)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH
Confidence 777777778999999999999999998761 123788999999999999999999999999998875433333333344
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 000159 446 YVPICMECL-NDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 446 l~p~l~k~l-~Ds~~~VR~aA~~al~~l~ 473 (2013)
+...+.... -...|.+|+.|+.....+-
T Consensus 232 ~~~~v~~l~~~~~~~~~~~ka~~v~~~le 260 (265)
T 3b2a_A 232 ISRIVDGLVYREGAPIIRLKAKKVSDLID 260 (265)
T ss_dssp HHHHHHHGGGCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 444555555 6889999999987766554
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.032 Score=59.68 Aligned_cols=189 Identities=14% Similarity=0.155 Sum_probs=136.1
Q ss_pred hhHHHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHHhhcCc--chHHHHHHHhhHHHHHHHHHhcCCC
Q 000159 1171 FREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKS--NTTCLLKVLEFLPELFDTLRDEGYS 1248 (2013)
Q Consensus 1171 ~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dt--N~~vl~k~Le~l~~l~~~l~~~~y~ 1248 (2013)
|=++++..|-..-|.-+..|+..+......-++..-+-++-+|-++ |=.++ -|+-.-+.|-.+ ...
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~--~ksEaIpltqeIa~a~G~l-------a~i--- 100 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLL--KKSEAIPLTQEIAKAFGQM-------AKE--- 100 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH--HHCCSHHHHHHHHHHHHHH-------HHH---
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHH--hhcccCchHHHHHHHHhHH-------HHh---
Confidence 4456777777777999999999998887776666555555444332 44554 334444444433 332
Q ss_pred CCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCcc--ccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCc
Q 000159 1249 LTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT--KTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEI 1326 (2013)
Q Consensus 1249 l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~v~p~s--kvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~g~~~ 1326 (2013)
........+|.|+.-.--..+++|-.+.-.++.|...||-. .+|.=++.-+.|||---|..+|++|+.+ |-+.
T Consensus 101 -~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~al----Gen~ 175 (253)
T 2db0_A 101 -KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAM----GENS 175 (253)
T ss_dssp -CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC----CTTT
T ss_pred -CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----hccC
Confidence 34567889999987663334558889999999999999865 5777777778899988888888888764 4432
Q ss_pred ccccc-hHHHHHHhhcCCChHHHHHHHHHHHHHHHHhChHHHHHhhcCCHHHHHhHHHHHHhh
Q 000159 1327 SGQLK-SLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWK 1388 (2013)
Q Consensus 1327 ~~~~k-~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~vg~Ls~~~~s~l~er~kr~ 1388 (2013)
...-- -|+.+-.++.|+|--||.+|..+|+ .+..+++|.+-.+.+++++.
T Consensus 176 ~~yv~PfLprL~aLL~D~deiVRaSaVEtL~------------~lA~~npklRkii~~kl~e~ 226 (253)
T 2db0_A 176 FKYVNPFLPRIINLLHDGDEIVRASAVEALV------------HLATLNDKLRKVVIKRLEEL 226 (253)
T ss_dssp HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHH------------HHHTSCHHHHHHHHHHHHHC
T ss_pred ccccCcchHHHHHHHcCcchhhhHHHHHHHH------------HHHHcCHHHHHHHHHHHHHh
Confidence 11112 3688899999999999999999999 55788899888888888874
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=96.89 E-value=2 Score=59.36 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc----ccCHHHHHHHHHHHH--HHHHHhhhcchhhhHhHHHHHHH
Q 000159 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT----DVNIAVAVEAIQAIG--NLARGLRTHFSGSSRFLLPVLLE 373 (2013)
Q Consensus 300 keR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~----D~N~~V~~~A~~~l~--~La~~L~~~f~~~~~~llp~LL~ 373 (2013)
+.|+.|=..|....+ ..++.|..+++.+.+.+. +.+..-...|+-+|. .+...+..++ .+...+++.|+.
T Consensus 148 ~VR~~AQ~~L~~~~~---~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~-~~~~~~~~ali~ 223 (997)
T 1vsy_5 148 DIYKPAQGTLVHCMK---QLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDY-KDIGRLIFLLIE 223 (997)
T ss_dssp HHHHHHHHHHHHHHT---TBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcCh-HHHHHHHHHHHH
Confidence 478888777777653 345667777766666553 556667788877765 4555555444 568889999999
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCC--------------------------------------hHhHHHHH----HHH
Q 000159 374 KLKEKKPTVAESLTQTLQAMHKAGCLN--------------------------------------LVDVVEDV----KTS 411 (2013)
Q Consensus 374 klkdkk~~V~~aa~~aL~ai~~~~~~~--------------------------------------l~~il~~l----~~~ 411 (2013)
.....|+.|+.-+..+...+......+ ..+.+..| +..
T Consensus 224 ~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~~~~L~~~l~~~ 303 (997)
T 1vsy_5 224 CCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSLLVDLQDKLLDK 303 (997)
T ss_dssp TCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998889988888777777666541100 00111112 222
Q ss_pred h-hcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 412 V-KNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 412 l-~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
+ .+.. |....-++.+|..++.+... ..-++++..+.+.+.|.+|.+|..|..++..++..+-.
T Consensus 304 ~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~ 369 (997)
T 1vsy_5 304 LDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIIS 369 (997)
T ss_dssp HHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2 1233 66666666665444322211 11256778899999999999999999999888766543
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0054 Score=73.26 Aligned_cols=169 Identities=13% Similarity=0.124 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHh-cccchhHHHHHHHHHHHHHHHHHhChhhHhhh--hhHHHHHH
Q 000159 868 KVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDIL 942 (2013)
Q Consensus 868 k~R~eale~l~~il~~a~--~~I~~~~~~eL~~~L~~-rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp~ll 942 (2013)
..|..|++.|..++.... ..+.. .| .++.|.. .|...+..|+..|+.+|+.++.. .+.....+ ...+|.|+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~--~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQ--LS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHH--TT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHH--cC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHH
Confidence 468889999998885210 11110 13 3466777 88889999999999999999853 23333332 25889999
Q ss_pred HHhC-CCcHHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC-CCh--h
Q 000159 943 KCLG-DNKKHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA--A 1011 (2013)
Q Consensus 943 ~~L~-D~k~~Vr~aa~~aL~~i~~~~g--l-----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~-~~~--~ 1011 (2013)
..|. +.+..+|..|..+|..++.... . ...+|.+...|.++ ++.+|..++..|.......... ..+ .
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv~~ 208 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCSM 208 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence 9998 4588999999999999886432 1 23567788888876 5788988887776654432111 011 2
Q ss_pred hhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1012 ~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
..+++++..|.+.+.+||..|..+|..+...
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 4667799999999999999999999988866
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.57 Score=60.76 Aligned_cols=373 Identities=12% Similarity=0.050 Sum_probs=202.8
Q ss_pred hhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh-H-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hhh----
Q 000159 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-A-KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---EAV---- 126 (2013)
Q Consensus 56 ~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~-~-~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~---~~~---- 126 (2013)
.+-.++...|..+|..|..+|..+...... .... + ...+|.||+-.-...+.+++.|..+|..+... +.-
T Consensus 52 ~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 52 EVIAMLGFRLDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 344567788999999999888766543222 1111 1 24678899874446899999999998888753 111
Q ss_pred -hhHHHHHHHHhhc-CChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhh------------------cCCChHHHH
Q 000159 127 -DVFLDVMEKAIKN-KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF------------------DHQDQNVRA 186 (2013)
Q Consensus 127 -~~v~~~L~~~~~~-KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll------------------~~~d~~VR~ 186 (2013)
...+..|+..+.+ ..+.++..+..+|..+-..--.+..=++.-++.|..++ ...|..|+.
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~ 210 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLT 210 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHH
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHH
Confidence 2346667777765 56777777766666543311111100122344444443 233679999
Q ss_pred HHHHHHHHHHHhhCCchhhHHHh--hhChHHHHHHHHHHHHhcCCCCCCC----ccchhhhhHhhhhhccccCCCCCCCC
Q 000159 187 SSKGLTLELCRWIGKDPVKTILF--EKMRDTMKKELEVELVNVSGTARPT----RKIRAEQDKELGQELISEDVGPGPSE 260 (2013)
Q Consensus 187 ~a~~l~~ely~~lG~~~l~~~l~--~~Lk~~q~keLe~~f~k~~~~~~P~----R~~rs~~~~~~~~ea~~~~~g~~~~~ 260 (2013)
.|..++..|-..- ++ .+..+. ..+-+..+.-|....++.....+-. ..+|--.. ....+.+
T Consensus 211 nAa~~L~NLs~~~-~~-~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~-~~~~e~~---------- 277 (584)
T 3l6x_A 211 NTAGCLRNVSSER-SE-ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY-QVHREIP---------- 277 (584)
T ss_dssp HHHHHHHHHTSSC-HH-HHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT-THHHHST----------
T ss_pred HHHHHHHHHhcCC-HH-HHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc-ccccccc----------
Confidence 9988887775321 11 112221 2333333444433322211000000 00000000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHHhc-ccC
Q 000159 261 ESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR-IAPGDFTEVCRTLKKLIT-DVN 338 (2013)
Q Consensus 261 ~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pk-i~~~~~~~l~~~L~k~l~-D~N 338 (2013)
..+.| .+. .+ . +........++ +..---..+++.|...+. ..+
T Consensus 278 --------~~~~~--~~~------~~-~------------------~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~ 322 (584)
T 3l6x_A 278 --------QAERY--QEA------AP-N------------------VANNTGTSPARGYELLFQPEVVRIYISLLKESKT 322 (584)
T ss_dssp --------TCCC-----------------------------------------CCCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred --------chhhh--hhh------cc-c------------------ccccccccCchhHHHHhcccHHHHHHHHHccCCC
Confidence 00001 000 00 0 00000111111 100001355677777886 457
Q ss_pred HHHHHHHHHHHHHHHHHhh---hcchhhh--HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH-----hHHHHH
Q 000159 339 IAVAVEAIQAIGNLARGLR---THFSGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-----DVVEDV 408 (2013)
Q Consensus 339 ~~V~~~A~~~l~~La~~L~---~~f~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~-----~il~~l 408 (2013)
..+...|+.+|..|+.+-. ..+...+ ...+|.|++.+......|+.++..+|..+... .... .+++.|
T Consensus 323 ~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~~I~~g~ip~L 400 (584)
T 3l6x_A 323 PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD--ARNKELIGKHAIPNL 400 (584)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hhHHHHHHhCCHHHH
Confidence 8899999999999986421 1222222 36699999999999999999999999999875 2222 346777
Q ss_pred HHHhhcC--------ChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhC
Q 000159 409 KTSVKNK--------VPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDG--TPEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 409 ~~~l~~K--------np~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~Ds--~~~VR~aA~~al~~l~~~~G 477 (2013)
..-|.+. +..+...++..|..++...+.. .... -...+|.|+.++.+. .+.++++|..+|..+ +.
T Consensus 401 V~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~-~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl---~~ 476 (584)
T 3l6x_A 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA-AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI---WG 476 (584)
T ss_dssp HHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH---HT
T ss_pred HHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH---Hc
Confidence 7777654 3467778888887776543321 1111 145789999999876 788888887777655 45
Q ss_pred chhHHH
Q 000159 478 MRPLER 483 (2013)
Q Consensus 478 e~~~~~ 483 (2013)
.+.+..
T Consensus 477 ~~elr~ 482 (584)
T 3l6x_A 477 YKELRK 482 (584)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 554443
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.004 Score=76.87 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=101.8
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
+.+...+-+.+|..|-.|.-.|+.+++......+-. ...|. -.|++++..||
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~~N~---DLAvRLLCVLA-------------- 228 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IRVDS---KLFSKIYEILV-------------- 228 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CCCCT---THHHHHHHHHH--------------
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------ccccH---HHHHHHHHHHH--------------
Confidence 456677899999999999999999884211111100 22232 44555555544
Q ss_pred HHHHHHHhcc-----CcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000159 368 LPVLLEKLKE-----KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2013)
Q Consensus 368 lp~LL~klkd-----kk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2013)
|++|+| -...|||.+.++|.++ .+-... -+++..+...+.+..|++|.+.+.-|..+ ...+..
T Consensus 229 ----LDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~- 296 (800)
T 3oc3_A 229 ----TDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED- 296 (800)
T ss_dssp ----HBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-
T ss_pred ----hccccccccCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-
Confidence 344444 2457999999999999 661112 35666666667889999999998887765 122212
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
++.+++++..+|.|.+-+||.+|+++|.-+.
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 6889999999999999999999999998776
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00016 Score=75.57 Aligned_cols=120 Identities=15% Similarity=0.075 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh
Q 000159 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403 (2013)
Q Consensus 324 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~ 403 (2013)
..-...|...++|.+..++..|+.+|+.+. . + . ++.|++.++|+.+.||..+..+|..+ .-..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~---~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~------~~~~ 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG----D---E---A-FEPLLESLSNEDWRIRGAAAWIIGNF------QDER 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS----S---T---T-HHHHHHGGGCSCHHHHHHHHHHHGGG------CSHH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC----c---h---H-HHHHHHHHcCCCHHHHHHHHHHHHhc------CCHH
Confidence 344566777888888888888877776542 1 1 1 58899999999999999887776644 2256
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000159 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (2013)
Q Consensus 404 il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~ 471 (2013)
.++.|...+++.+|.||..++..|..+- . +..++.|.+.+.|.++.||.+|..+|+.
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIG---G--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHC---S--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC---c--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 7888889999999999999998887641 1 3457888999999999999999998864
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=4.5 Score=57.52 Aligned_cols=202 Identities=10% Similarity=0.018 Sum_probs=116.8
Q ss_pred ChHHHHHHHHHHHHHHHhccccC-CCCChhhHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHH
Q 000159 866 DWKVRLESIEAVNKILEEANKRI-QPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 941 (2013)
Q Consensus 866 ~Wk~R~eale~l~~il~~a~~~I-~~~~~~eL~~~L~~rL---~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~l 941 (2013)
.|..+......++.++....... .+.....++..|...+ ...+..++..++.+++.+..-+.. -..++..++..|
T Consensus 499 ~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~l 577 (1204)
T 3a6p_A 499 SFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKL 577 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHH
Confidence 57777666666666665431111 1222112333333332 345677888999999877755432 125677777777
Q ss_pred HHHhCC------------CcHHHHHHHHHHHHHHHHhcC--chhhHH----HHHHHHhcCC-CChhhHHHHHHHHHHHhc
Q 000159 942 LKCLGD------------NKKHMRECTLTVLDAWLAAVH--LDKMVP----YVTTALTDAK-LGAEGRKDLFDWLSKQLT 1002 (2013)
Q Consensus 942 l~~L~D------------~k~~Vr~aa~~aL~~i~~~~g--l~~ll~----~l~~~L~~~k-~~p~~R~~~l~~L~~~l~ 1002 (2013)
+..+.+ ..+.||.+|..++..++..++ +-.+++ .+...+.... ....-+..+...+.-.-.
T Consensus 578 l~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~ 657 (1204)
T 3a6p_A 578 FSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISN 657 (1204)
T ss_dssp HHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHG
T ss_pred HHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhc
Confidence 877766 456899999999999999885 233333 3444444332 334455555555543311
Q ss_pred cCCCC---CC-hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHH--H-------HHHHHHHh
Q 000159 1003 GLSGF---PD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL--A-------LILERIKL 1069 (2013)
Q Consensus 1003 ~~~~~---~~-~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~--~-------~i~~~l~k 1069 (2013)
..+.. .. +..++.|++..+.+ ++++. +......|+..+|-+....+....++..+ . .+...+++
T Consensus 658 ~~~~~~~~~~~l~~ll~P~~~~w~~--~~~~~-~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r 734 (1204)
T 3a6p_A 658 QFKNYERQKVFLEELMAPVASIWLS--QDMHR-VLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKR 734 (1204)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHSC--HHHHH-HHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcc--HHHHH-hhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 12221 22 56678888887764 44555 34455788888887766555555554322 3 56667777
Q ss_pred cC
Q 000159 1070 NG 1071 (2013)
Q Consensus 1070 ~~ 1071 (2013)
.+
T Consensus 735 ~~ 736 (1204)
T 3a6p_A 735 TC 736 (1204)
T ss_dssp CC
T ss_pred hc
Confidence 53
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.31 Score=63.23 Aligned_cols=347 Identities=10% Similarity=0.059 Sum_probs=193.9
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhh
Q 000159 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVAD--IKTRAHAMKCLTTFSEAV 713 (2013)
Q Consensus 638 ~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~ 713 (2013)
..+.++.+|. ..+..++..+...|..++..... .+..+ .-.||.||.-|.. ..++..|..+|..++...
T Consensus 49 ~i~~LV~~L~------s~~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 49 ELPEVIAMLG------FRLDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred cHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 3566777763 33456677777777766642111 11222 1257888887755 568899999999887521
Q ss_pred Chh--------HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC-CC---ChhhHHHHHH--hcCC-----------
Q 000159 714 GPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HL---KLKDLIDFCK--DTGL----------- 768 (2013)
Q Consensus 714 ~~~--------~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~-~l---~~k~li~~l~--~~gL----------- 768 (2013)
+.+ -.++.|+..+....++.++..+...|..+-..-... .+ -+..|+..+. ..|.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccc
Confidence 111 136667776654567777777665555543210000 00 1233444331 0111
Q ss_pred CCCcHhHHHHHHHHHHHHHHhhChhHHhhh---hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000159 769 QSSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2013)
Q Consensus 769 ~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L---~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2013)
...+..|+..|..+|..|... ++..+..+ +.+.+.++..|.....+....
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~-------------------------- 254 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSD-------------------------- 254 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCS--------------------------
T ss_pred ccccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCcc--------------------------
Confidence 223579999999998887532 22222222 455667777776554332110
Q ss_pred CCcccccccchHHHHhcCCCChHHHHHHHHHHHHHH-------------------------HhccccCCCCChhhHHHHH
Q 000159 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL-------------------------EEANKRIQPAGTGELFGGL 900 (2013)
Q Consensus 846 pr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il-------------------------~~a~~~I~~~~~~eL~~~L 900 (2013)
.+....++-.|..+. ....+.+..-.-...++.|
T Consensus 255 ---------------------~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~L 313 (584)
T 3l6x_A 255 ---------------------SKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIY 313 (584)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHH
Confidence 000001111111110 0011111110002456777
Q ss_pred Hhcccc-hhHHHHHHHHHHHHHHHHHhCh---hhHhhh--hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----
Q 000159 901 RGRLYD-SNKNLVMATLITLGAVASAMGP---AVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD---- 970 (2013)
Q Consensus 901 ~~rL~D-sN~~V~~~Al~~l~~La~alg~---~~~~~~--~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~---- 970 (2013)
...|.+ .+..+...|+.+|..|+..-++ .+...+ ...+|.|++.|......|+.+|..+|..+.......
T Consensus 314 l~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~ 393 (584)
T 3l6x_A 314 ISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIG 393 (584)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 777754 4788999999999999754322 222233 356999999999999999999999999998766533
Q ss_pred -hhHHHHHHHHhcCCC------ChhhHHHHHHHHHHHhccCCCC-CC--hhhhHHHHHhhcCCC--ChHHHHHHHHHHHH
Q 000159 971 -KMVPYVTTALTDAKL------GAEGRKDLFDWLSKQLTGLSGF-PD--AAHLLKPASIAMTDK--SSDVRKAAEACIVE 1038 (2013)
Q Consensus 971 -~ll~~l~~~L~~~k~------~p~~R~~~l~~L~~~l~~~~~~-~~--~~~ll~pl~~~L~D~--~~dVR~aA~~~L~~ 1038 (2013)
..+|.+...|.+... +.++...++..|...+...... .. -...+++|+.+|.+. ...++++|..+|..
T Consensus 394 ~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~n 473 (584)
T 3l6x_A 394 KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQT 473 (584)
T ss_dssp HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 345667777765421 2345666776666554322111 11 124567788888775 78888888877765
Q ss_pred H
Q 000159 1039 I 1039 (2013)
Q Consensus 1039 l 1039 (2013)
+
T Consensus 474 l 474 (584)
T 3l6x_A 474 I 474 (584)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.17 Score=66.89 Aligned_cols=364 Identities=12% Similarity=0.093 Sum_probs=197.5
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~----~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (2013)
+-+.+.+.+ -..|.-|.-.|.++....+... ...+.+.++|.. .....++.+++.|.++--. +..-.
T Consensus 299 ~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~------~~~~~~~~AvEgLaYLSl~-~~VKe 369 (778)
T 3opb_A 299 QLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISR------RIVPKVEMSVEALAYLSLK-ASVKI 369 (778)
T ss_dssp HHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTT------CCHHHHHHHHHHHHHHTTS-SHHHH
T ss_pred HHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHhCC-HHHHH
Confidence 334444444 2667777778877765532211 223455555532 1112267778877765431 11111
Q ss_pred h--hHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhC--h-----hHHHHHHHHHhhhCCChhHHH---------HHHHH
Q 000159 680 K--CVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG--P-----GFIFERLYKIMKDHKNPKVLS---------EGILW 741 (2013)
Q Consensus 680 ~--~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~--~-----~~Vl~~L~~~l~~~KnpKv~~---------~~l~~ 741 (2013)
. .-..++..|++-+.+.........++..++.... + +.-+.+|.+++ +.+.|+... +...+
T Consensus 370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A-~~~~p~~~~~d~~~~~~~~v~~~ 448 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXX-XXXXPAADKVGAEKAAKEDILLF 448 (778)
T ss_dssp HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------------CCTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhc-cccCcccCcccccccchHHHHHH
Confidence 1 1123566666666542223334444444443221 1 12344555544 222232221 11111
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCC
Q 000159 742 MVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT 821 (2013)
Q Consensus 742 L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~ 821 (2013)
-...+-+. .+++.+..+ +.+.++.+|..|..++..|-.. +..+..+-. ++
T Consensus 449 ~~~~l~ea--------GvIp~Lv~L-l~S~s~~~re~A~~aL~nLS~d--~~~R~~lvq------------------qG- 498 (778)
T 3opb_A 449 NEKYILRT--------ELISFLKRE-MHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQ------------------QG- 498 (778)
T ss_dssp HHHHTTTT--------THHHHHHHH-GGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHH------------------TT-
T ss_pred HHHHHHHC--------cCHHHHHHH-HcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHH------------------CC-
Confidence 22222222 356666676 8888999999999998887522 222222200 00
Q ss_pred CCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCCh---HHHHHHHHHHHHHHHhccccCC--CCChhhH
Q 000159 822 VVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDW---KVRLESIEAVNKILEEANKRIQ--PAGTGEL 896 (2013)
Q Consensus 822 p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~W---k~R~eale~l~~il~~a~~~I~--~~~~~eL 896 (2013)
..+.|+..+.+... ..|..|...|..++...++.+. .+...+.
T Consensus 499 --------------------------------al~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~a 546 (778)
T 3opb_A 499 --------------------------------AVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNA 546 (778)
T ss_dssp --------------------------------HHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTH
T ss_pred --------------------------------CHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccc
Confidence 01123333333321 3688999999999864443331 1111367
Q ss_pred HHHHHhccc-chhH-------------HHHHHHHHHHHHHHHHhC---hhhH-hhhh--hHHHHHHHHhCCCcHHHHHHH
Q 000159 897 FGGLRGRLY-DSNK-------------NLVMATLITLGAVASAMG---PAVE-KSSK--GVLSDILKCLGDNKKHMRECT 956 (2013)
Q Consensus 897 ~~~L~~rL~-DsN~-------------~V~~~Al~~l~~La~alg---~~~~-~~~~--~llp~ll~~L~D~k~~Vr~aa 956 (2013)
++.|...|. +... .-+..|+.++..||..-+ .+.. ..++ ..+|.+...|.+.+..||.+|
T Consensus 547 I~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA 626 (778)
T 3opb_A 547 IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRST 626 (778)
T ss_dssp HHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHH
T ss_pred hHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHH
Confidence 888888886 2221 226689999999997543 2332 3444 478999999999999999999
Q ss_pred HHHHHHHHHhcC-c-hhh-----------HHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC----CChhhhHHHHHh
Q 000159 957 LTVLDAWLAAVH-L-DKM-----------VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASI 1019 (2013)
Q Consensus 957 ~~aL~~i~~~~g-l-~~l-----------l~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~~ 1019 (2013)
..++..++.+.. + ..+ ++.+...+... +..+|..+...|+..-...+.. -.....+..++.
T Consensus 627 ~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~ 704 (778)
T 3opb_A 627 LELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQ 704 (778)
T ss_dssp HHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHH
Confidence 999999996542 2 233 44566666654 5788888886666432222210 111346667888
Q ss_pred hcCC--CChHHHHHHHHHHHHHHH
Q 000159 1020 AMTD--KSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 1020 ~L~D--~~~dVR~aA~~~L~~l~~ 1041 (2013)
.|.| .+.++|..+..++..+..
T Consensus 705 lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 705 VFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHhccCCCHHHHHHHHHHHHHHHH
Confidence 8888 899999999999998886
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.066 Score=65.12 Aligned_cols=282 Identities=9% Similarity=0.047 Sum_probs=130.5
Q ss_pred CCCchhhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhChh--HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhC
Q 000159 675 TKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG--FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750 (2013)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~~~--~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG 750 (2013)
..|+...+..+.+.++.-+... .+|....-.+..+++. ..+ .+.+.+.+-+ +++||-+|.-++..|+.+...
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~-- 134 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDM-TGKEDSYRGPAVRALCQITDS-- 134 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHH-HSSCHHHHHHHHHHHHHHCCT--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhc-CCCcHhHHHHHHHHHhcCCCH--
Confidence 4676666667777777665543 4566666566655554 111 3566677775 799999999999999988631
Q ss_pred CCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccC
Q 000159 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (2013)
Q Consensus 751 ~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2013)
. =+..+...++.+ +.|.||.||.+|.-+...||....+-++.|++
T Consensus 135 --~-m~~~l~~~lk~~-L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~------------------------------- 179 (355)
T 3tjz_B 135 --T-MLQAIERYMKQA-IVDKVPSVSSSALVSSLHLLKCSFDVVKRWVN------------------------------- 179 (355)
T ss_dssp --T-THHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHH-------------------------------
T ss_pred --H-HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH-------------------------------
Confidence 1 146788888997 99999999999999988777544333333322
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhc-ccchhH
Q 000159 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNK 909 (2013)
Q Consensus 831 ~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~r-L~DsN~ 909 (2013)
++.+.+.|.|--+-..|+..+..+... . ...+..++..|... +. +.
T Consensus 180 --------------------------~l~~ll~d~n~~V~~~Al~lL~ei~~~--d---~~a~~kLv~~l~~~~l~--~~ 226 (355)
T 3tjz_B 180 --------------------------EAQEAASSDNIMVQYHALGLLYHVRKN--D---RLAVSKMISKFTRHGLK--SP 226 (355)
T ss_dssp --------------------------HHHHHTTCSSHHHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHSSCCS--CH
T ss_pred --------------------------HHHHHhcCCCccHHHHHHHHHHHHHhh--c---hHHHHHHHHHHhcCCCc--Ch
Confidence 222223334433334444444444321 0 00012233333221 11 12
Q ss_pred HHHHHHHHHHHHHHHHhChhh-HhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCC
Q 000159 910 NLVMATLITLGAVASAMGPAV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLG 986 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~-~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~ 986 (2013)
-....-++++.. +++.= ......++..+...|+.+...|.=.|..++..+-.... +...+..+...|.++ .
T Consensus 227 ~~q~~llr~l~~----~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~--d 300 (355)
T 3tjz_B 227 FAYCMMIRVASR----QLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSP--K 300 (355)
T ss_dssp HHHHHHHHHHTC----C-----------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSS--S
T ss_pred HHHHHHHHHHHH----hccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCC--C
Confidence 222222333222 22221 23345667777778888888888777788777644211 223344556667665 3
Q ss_pred hhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHH
Q 000159 987 AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (2013)
Q Consensus 987 p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L 1036 (2013)
+.+|--++..|.......+. .+...-.-+..|+.|.|..++--|...|
T Consensus 301 ~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 301 AALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp SSSHHHHHHCC---------------------------------------
T ss_pred chHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 68899999888876654432 1223333488899999988877665443
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.15 Score=64.65 Aligned_cols=381 Identities=10% Similarity=0.037 Sum_probs=195.4
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhC
Q 000159 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG 714 (2013)
Q Consensus 639 ~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~ 714 (2013)
.+.++++|.. .+..++..+..++..++..... .+..+ .-.+|.|++-+.+ ..++..|..+|..++...+
T Consensus 4 l~~lv~~L~s------~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~ 76 (457)
T 1xm9_A 4 IPKAVQYLSS------QDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp HHHHHHHHHS------SCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHCC------CCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 4556777642 2345677778887776642211 12111 2357888887754 5678888889988875311
Q ss_pred h--hH-----HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCC--------CC--------C
Q 000159 715 P--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGL--------QS--------S 771 (2013)
Q Consensus 715 ~--~~-----Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL--------~~--------~ 771 (2013)
. .. .++.|++.+..+.++.++..++..|.++...-.....=+...++.+..+ + .+ .
T Consensus 77 ~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~l-l~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADR-VIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHH-TTHHHHTCC---------CC
T ss_pred HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHH-HhccccccccCccchhcccc
Confidence 1 11 2556666664377899999999998888753110000011344555555 5 22 3
Q ss_pred cHhHHHHHHHHHHHHHHhhChhHHhhhh---hccHHHHHHHHHHHhhCCCCCCCC-----CcccccCccccCCCCCCCCC
Q 000159 772 AAATRNATIKLLGALHKFVGPDIKGFLA---DVKPALLSALDAEYEKNPFEGTVV-----PKKTVRASESTSSVSSGGSD 843 (2013)
Q Consensus 772 n~~VR~aA~~ll~~Ly~~~G~~l~~~L~---~lkp~ll~~Le~ef~k~~~~~~p~-----p~R~~r~~~~~~s~~~~~~d 843 (2013)
+..|...|..+|..|... +..+..+- +.-|.+...+......-....... ..+.+-...... ...+.+
T Consensus 156 ~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~--~~~~~~ 231 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE--VPTRYR 231 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH--SCCHHH
T ss_pred cHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhcc--Ccchhh
Confidence 456666888888877654 44444442 667778887776533211000000 000000000000 000000
Q ss_pred ---CCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-----hhhHHHHHHhcccch-hHHHHHH
Q 000159 844 ---GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-----TGELFGGLRGRLYDS-NKNLVMA 914 (2013)
Q Consensus 844 ---~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-----~~eL~~~L~~rL~Ds-N~~V~~~ 914 (2013)
..++.... . ......+....-+.+..+.+ + -+.+ ..-.+.. ..+.++.|...|.++ +..+...
T Consensus 232 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~-~--~~~~--~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~ 303 (457)
T 1xm9_A 232 QLEYNARNAYT--E-KSSTGCFSNKSDKMMNNNYD-C--PLPE--EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303 (457)
T ss_dssp HHHHTC----------------------------------CCC--CCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHH
T ss_pred hcccccccccc--c-ccccchhhccchhhhhcccc-C--Cccc--cccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHH
Confidence 00000000 0 00000000000000000000 0 0000 0000110 134566666777543 5788888
Q ss_pred HHHHHHHHHHHhChh---h-Hhhh--hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-----hhhHHHHHHHHhcC
Q 000159 915 TLITLGAVASAMGPA---V-EKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-----DKMVPYVTTALTDA 983 (2013)
Q Consensus 915 Al~~l~~La~alg~~---~-~~~~--~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl-----~~ll~~l~~~L~~~ 983 (2013)
|+.++..|+..-+.. . ...+ ...+|.+++.|.+.+..|+..|..+|..+...-.. ...+|.+...|.+.
T Consensus 304 a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~ 383 (457)
T 1xm9_A 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSH 383 (457)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSC
T ss_pred HHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCC
Confidence 899998887544331 2 1122 35689999999999999999999999988764432 23566777777654
Q ss_pred CC----ChhhHHHHHHHHHHHhccCCCC-C--ChhhhHHHHHhhcCCC-ChHHHHHHHHHHHHH
Q 000159 984 KL----GAEGRKDLFDWLSKQLTGLSGF-P--DAAHLLKPASIAMTDK-SSDVRKAAEACIVEI 1039 (2013)
Q Consensus 984 k~----~p~~R~~~l~~L~~~l~~~~~~-~--~~~~ll~pl~~~L~D~-~~dVR~aA~~~L~~l 1039 (2013)
.. ..++...++..|...+...... . .-...+++|...+... +.+|++.|...|..+
T Consensus 384 ~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp CSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 21 1234456666666655432210 0 1134567788888777 999999998877543
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=96.13 E-value=8.2 Score=53.68 Aligned_cols=173 Identities=10% Similarity=0.047 Sum_probs=116.2
Q ss_pred hHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHhChh-hHhhhhhHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHh
Q 000159 895 ELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLG-----DNKKHMRECTLTVLDAWLAA 966 (2013)
Q Consensus 895 eL~~~L~~rL~D--sN~~V~~~Al~~l~~La~alg~~-~~~~~~~llp~ll~~L~-----D~k~~Vr~aa~~aL~~i~~~ 966 (2013)
-++..|...+.+ .++..+..++-++|.|+.++..+ ..+++..++|.++..+. |.+..||..+.-+++.+.+-
T Consensus 451 ~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w 530 (1023)
T 4hat_C 451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF 530 (1023)
T ss_dssp HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH
Confidence 344555555543 57999999999999999998876 67899999999999886 57778888887888755443
Q ss_pred cC-----chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC----------CCChhhhHHHHHhhcCCCChHHHHH
Q 000159 967 VH-----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG----------FPDAAHLLKPASIAMTDKSSDVRKA 1031 (2013)
Q Consensus 967 ~g-----l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~----------~~~~~~ll~pl~~~L~D~~~dVR~a 1031 (2013)
+. +..++..+...+.+. +|.+...++..+...-..... .+.+..++..+..++.+-...-+..
T Consensus 531 l~~~~~~L~~vl~~L~~~l~~~--~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 531 LKAHWNFLRTVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 32 455566666666544 355555555444433222111 1233444545666777778888899
Q ss_pred HHHHHHHHHHHcChhH-HHHHhccCChHHHHHHHHHHHh
Q 000159 1032 AEACIVEILRAGGQET-IEKNLKDIQGPALALILERIKL 1069 (2013)
Q Consensus 1032 A~~~L~~l~~~~G~~~-~~~~l~~L~~~~~~~i~~~l~k 1069 (2013)
+.++++.++...|.+. ...++..|-+.-...+...++.
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~ 647 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQ 647 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999998654 5556666655555555555543
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.52 Score=59.69 Aligned_cols=386 Identities=12% Similarity=0.035 Sum_probs=202.9
Q ss_pred hHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh--HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh-h-hhh-----
Q 000159 57 FKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL-E-AVD----- 127 (2013)
Q Consensus 57 ~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~--~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~-~-~~~----- 127 (2013)
+-+++...|..+|..|..+|..+...... .... -...+|.||+-.-...+.++..|..++..+.-. + .-.
T Consensus 7 lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~ 85 (457)
T 1xm9_A 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85 (457)
T ss_dssp HHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 44566777889999999999887643221 1211 234688888763336788999998888887743 1 112
Q ss_pred hHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhh--------cC--------CChHHHHHHHH
Q 000159 128 VFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF--------DH--------QDQNVRASSKG 190 (2013)
Q Consensus 128 ~v~~~L~~~~~-~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll--------~~--------~d~~VR~~a~~ 190 (2013)
..++.|...+. +.+++++..++.+|..+-..-..+..=++..++.|..++ ++ .+..|+..|..
T Consensus 86 G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~ 165 (457)
T 1xm9_A 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATG 165 (457)
T ss_dssp TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHH
T ss_pred CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHH
Confidence 33567777787 789999999999998876531111100125678888888 22 34556667777
Q ss_pred HHHHHHHhhCCchhhHHHhh--hChHHHHHHHHHHHHhcCCCCCCCccchhhhhH---hhhhhccccCCCCCCCCCCCCC
Q 000159 191 LTLELCRWIGKDPVKTILFE--KMRDTMKKELEVELVNVSGTARPTRKIRAEQDK---ELGQELISEDVGPGPSEESTAD 265 (2013)
Q Consensus 191 l~~ely~~lG~~~l~~~l~~--~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~---~~~~ea~~~~~g~~~~~~~~~~ 265 (2013)
++..|... ++ .+..+.+ +.-+..+..|......... ..+.. ..... ......... . ..+
T Consensus 166 aL~nLs~~--~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~---~~~~~-e~a~~~L~nLs~~~~~~-~-~~~------- 229 (457)
T 1xm9_A 166 CLRNLSSA--DA-GRQTMRNYSGLIDSLMAYVQNCVAASRC---DDKSV-ENCMCVLHNLSYRLDAE-V-PTR------- 229 (457)
T ss_dssp HHHHHTTS--HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCT---TCTTH-HHHHHHHHHHTTTHHHH-S-CCH-------
T ss_pred HHHHHccC--HH-HHHHHHHcCCCHHHHHHHHHhhccccCC---chHHH-HHHHHHHHhcccchhcc-C-cch-------
Confidence 77766653 22 2233321 3333334444332211100 00100 00000 000000000 0 000
Q ss_pred CCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHh---cCCCCCC-CChHHHHHHHHHHhc-ccCHH
Q 000159 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA---STKRIAP-GDFTEVCRTLKKLIT-DVNIA 340 (2013)
Q Consensus 266 ~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~---~~pki~~-~~~~~l~~~L~k~l~-D~N~~ 340 (2013)
..... +.......... .. ..| .....+. +..+.+ + .+. ..++-.. --...+++.|...+. ..+..
T Consensus 230 -~~~~~-~~~~~~~~~~~-~~-~~~-~~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 230 -YRQLE-YNARNAYTEKS-ST-GCF-SNKSDKM---MNNNYD-C-PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp -HHHHH-HTC------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred -hhhcc-ccccccccccc-cc-chh-hccchhh---hhcccc-C-CccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 00000 00000000000 00 011 1111110 001100 0 000 0000000 001356677777777 55678
Q ss_pred HHHHHHHHHHHHHHHhhhc---c-hhhh--HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHH
Q 000159 341 VAVEAIQAIGNLARGLRTH---F-SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVK 409 (2013)
Q Consensus 341 V~~~A~~~l~~La~~L~~~---f-~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l-----~~il~~l~ 409 (2013)
+...|+-+|..|+.+-... . ...+ ...+|.|++.+......|+..+..+|..+..+ ... ..+++.|+
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv 377 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVT 377 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHH
Confidence 8888899999998653321 1 1112 35789999999999999999999999988764 222 23466777
Q ss_pred HHhhcCCh------HHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 000159 410 TSVKNKVP------LVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG-TPEVRDAAFSVLAAI 472 (2013)
Q Consensus 410 ~~l~~Knp------~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds-~~~VR~aA~~al~~l 472 (2013)
.-|.+.++ .+...++..|..++...+.. ..... ...++.|..++... +.+|+..|...|..+
T Consensus 378 ~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~-~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 77776543 56778888888877654332 11111 34678888989888 899999888877644
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.077 Score=64.54 Aligned_cols=187 Identities=15% Similarity=0.156 Sum_probs=129.9
Q ss_pred CCCCCCCCcccccccCcchhhhhhhcc--CCHHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHH
Q 000159 270 IDEYELVDPVDILTPLEKSGFWEGVKA--TKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAI 346 (2013)
Q Consensus 270 iD~~dl~~~vdIl~kl~~~~f~~~l~s--~kWkeR~eaL~~L~~l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~ 346 (2013)
..||.-.|...|+.+. ..| .+ .+-+.+++++..+..+. .+..+....-..++..+.+.+...|..+....-
T Consensus 16 ~~p~~~~~k~~v~qe~--r~f----n~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvY 89 (355)
T 3tjz_B 16 SNPFQHLEKSAVLQEA--RVF----NETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCY 89 (355)
T ss_dssp ----CCCCHHHHHHHG--GGT----TSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHH
T ss_pred cCccccchHHHHHHHH--HHh----cCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3456555655554432 122 33 24455567888877655 453332233456777788889888888877776
Q ss_pred HHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHH
Q 000159 347 QAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (2013)
Q Consensus 347 ~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~ 426 (2013)
-.+..+++. ...+-.++..+.+=+.++++.+|-.|..+|..+... .-++.+.+.+..++.|++|-||..++--
T Consensus 90 Lyl~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVRk~A~l~ 162 (355)
T 3tjz_B 90 LTIKEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVSSSALVS 162 (355)
T ss_dssp HHHHHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 666666654 344668899999999999999999887777766542 3467788888999999999999999888
Q ss_pred HHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000159 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2013)
Q Consensus 427 L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~ 474 (2013)
..+++...+ . .++.++..+..++.|+++.|--.|..++..+.+
T Consensus 163 ~~kL~~~~p-e----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 163 SLHLLKCSF-D----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHTTTCH-H----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCH-H----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 887765432 2 236788899999999999998777776666653
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=95.77 E-value=1.9 Score=57.59 Aligned_cols=89 Identities=22% Similarity=0.218 Sum_probs=61.6
Q ss_pred hhhhcCCChhhhccCCChHHHHHHHHHHHHHhhccCCCCc-hHHH---hhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHh
Q 000159 8 LKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKD-NRIR---ELGPLFKKTVADSNAPVQDKALDALIAYLKAA 83 (2013)
Q Consensus 8 ~~~~~~lpl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~-~~~~---~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~ 83 (2013)
+.+=.=+|+-++|+|.+.+.|..|...|...+.. +.. ..+. -...++.+.+.|+|..|++.|..+|..+....
T Consensus 31 ~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~---~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 31 LREDKILPVLKDLKSPDAKSRTTAAGAIANIVQD---AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTS---HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcC---cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 4444668999999999999999999999988742 111 1111 12345677899999999999999998877655
Q ss_pred chhhhhh--HHHHHHHHH
Q 000159 84 DADAGRY--AKEVCDAIA 99 (2013)
Q Consensus 84 ~~~~~~~--~~~v~~~Lv 99 (2013)
+.++..+ ..+|++.|.
T Consensus 108 g~d~~~~l~~~~il~~L~ 125 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIE 125 (684)
T ss_dssp CHHHHHHHHHTTHHHHHH
T ss_pred CchHHHHHHHcChHHHHH
Confidence 4433322 233555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.64 E-value=0.74 Score=62.18 Aligned_cols=256 Identities=17% Similarity=0.119 Sum_probs=158.9
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChh--HHhhh----hhccHH
Q 000159 731 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD--IKGFL----ADVKPA 804 (2013)
Q Consensus 731 npKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~--l~~~L----~~lkp~ 804 (2013)
++.++.+++..|.-+.- |... ..+++.+... +.+.++.+|..|.-.+|-+|.-.|+. +...+ ++....
T Consensus 450 ~~~ir~gAaLGLGla~~--GS~~---eev~e~L~~~-L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~ 523 (963)
T 4ady_A 450 VDVLLHGASLGIGLAAM--GSAN---IEVYEALKEV-LYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGN 523 (963)
T ss_dssp HHHHHHHHHHHHHHHST--TCCC---HHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHH
T ss_pred cHHHHHHHHHHHHHHhc--CCCC---HHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHH
Confidence 47788888877765432 4322 3567777776 77777888999999999888655532 22111 111111
Q ss_pred HHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhc-CCCChHHHHHHHHHHHHHHHh
Q 000159 805 LLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL-ESPDWKVRLESIEAVNKILEE 883 (2013)
Q Consensus 805 ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l-~d~~Wk~R~eale~l~~il~~ 883 (2013)
+...+---+..+- +.+.+ ..+.+++.+ .+.+|-+|..++-.+.-.
T Consensus 524 vrR~aalgLGll~---------------------------~g~~e----~~~~li~~L~~~~dp~vRygaa~alglA--- 569 (963)
T 4ady_A 524 ITRGLAVGLALIN---------------------------YGRQE----LADDLITKMLASDESLLRYGGAFTIALA--- 569 (963)
T ss_dssp HHHHHHHHHHHHT---------------------------TTCGG----GGHHHHHHHHHCSCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhh---------------------------CCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHH---
Confidence 1100000000000 00011 123454444 467899999887665421
Q ss_pred ccccCCCCChhhHHHHH-HhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh-CCCcHHHHHHHHHHHH
Q 000159 884 ANKRIQPAGTGELFGGL-RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLD 961 (2013)
Q Consensus 884 a~~~I~~~~~~eL~~~L-~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L-~D~k~~Vr~aa~~aL~ 961 (2013)
.....+ ...++.| .....|.+..|++.|+..|+.|+ +|.. ..++.++..| .+.++.||..+.-+|+
T Consensus 570 ---yaGTGn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~--~g~~------e~v~rlv~~L~~~~d~~VR~gAalALG 637 (963)
T 4ady_A 570 ---YAGTGN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVL--LRDY------TTVPRIVQLLSKSHNAHVRCGTAFALG 637 (963)
T ss_dssp ---TTTSCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--SSSC------SSHHHHTTTGGGCSCHHHHHHHHHHHH
T ss_pred ---hcCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhc--cCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222222 3445534 33457888889999888887664 3332 2355566544 4678999999999999
Q ss_pred HHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC--CCChhhhHHHHHhhcCC--CChHHHHHHHHHHH
Q 000159 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTD--KSSDVRKAAEACIV 1037 (2013)
Q Consensus 962 ~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~L~D--~~~dVR~aA~~~L~ 1037 (2013)
-+....+...+++.+...+.+. +..+|+.++.-|......... .+.+..++.-+.+.+.| .++.+|-.++-+.+
T Consensus 638 li~aGn~~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 638 IACAGKGLQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp HHTSSSCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 8887777778888777777766 589999999999877655443 23566777777777766 45778888887777
Q ss_pred HHH
Q 000159 1038 EIL 1040 (2013)
Q Consensus 1038 ~l~ 1040 (2013)
-+.
T Consensus 716 ll~ 718 (963)
T 4ady_A 716 IMN 718 (963)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.01 Score=61.54 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=60.8
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (2013)
+.|+..+.|.+|.+|..|+..+..+- -.+.+..|...+.|.+..|+..|+..++.+. -.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~-----------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~ 103 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GE 103 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cH
Confidence 56777778888888888877765431 1345667777777888888888888877653 12
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000159 936 GVLSDILKCLGDNKKHMRECTLTVLD 961 (2013)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~aa~~aL~ 961 (2013)
..++.++..+.|....||.+|..+|.
T Consensus 104 ~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 104 RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45677777888888888888877764
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=94.96 E-value=1.2 Score=61.31 Aligned_cols=401 Identities=10% Similarity=0.023 Sum_probs=210.4
Q ss_pred hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchh-hh--hhHHHHHHHHHHhhcC-C-ChhHHHHHHHHHHHHHhhhhh--
Q 000159 54 GPLFKKTVADSNAPVQDKALDALIAYLKAADAD-AG--RYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWVELEAV-- 126 (2013)
Q Consensus 54 ~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~-~~--~~~~~v~~~LveK~l~-~-k~~~k~~A~~~ll~~~E~~~~-- 126 (2013)
.+.+..++.|+.-.-|-.|.|.+..++...... +. ...-+++..++.++|. + .+.+...=..|+-...+.-+|
T Consensus 510 ~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR 589 (997)
T 1vsy_5 510 FELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRR 589 (997)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhh
Confidence 455667889999999999999998887665331 21 2345677778888886 3 555554322332222222223
Q ss_pred -hhHHHHHHH--H---hhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhC
Q 000159 127 -DVFLDVMEK--A---IKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (2013)
Q Consensus 127 -~~v~~~L~~--~---~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (2013)
..+++.|.. . ......=..+..+..|..++.+.|-+.-..++++..+. +.|+-++||++.-.++..++...-
T Consensus 590 ~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~ 667 (997)
T 1vsy_5 590 SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQS 667 (997)
T ss_dssp CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhc
Confidence 456665522 1 12223334556788899999999987656788887777 999999999999999998887762
Q ss_pred Cch---hhHHHh---h----------hChHHHHHHHHHHHHhcC---C---CCCCCccchhhhhHhhh--hhccccCCCC
Q 000159 201 KDP---VKTILF---E----------KMRDTMKKELEVELVNVS---G---TARPTRKIRAEQDKELG--QELISEDVGP 256 (2013)
Q Consensus 201 ~~~---l~~~l~---~----------~Lk~~q~keLe~~f~k~~---~---~~~P~R~~rs~~~~~~~--~ea~~~~~g~ 256 (2013)
-.. ++..+. . ...+....-+.+.|++++ + ...|.-..++....-.+ ..=-....+.
T Consensus 668 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~ 747 (997)
T 1vsy_5 668 NPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARG 747 (997)
T ss_dssp CCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSG
T ss_pred ccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcC
Confidence 100 110000 0 001111111222232221 0 00010000000000000 0000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHH-HHHHHHHhcCCCCCCCChHHHHHHHHHHhc
Q 000159 257 GPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDA-VAELTKLASTKRIAPGDFTEVCRTLKKLIT 335 (2013)
Q Consensus 257 ~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~ea-L~~L~~l~~~pki~~~~~~~l~~~L~k~l~ 335 (2013)
+. ...+-|| .... ++ | .+....+.++=.+-... ...+...++.--+.+.....++.+|.....
T Consensus 748 ~~--------~~~l~~~--~~~~-ll---P--~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~ 811 (997)
T 1vsy_5 748 PN--------KVLLVPY--LVDY-VL---P--FLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNV 811 (997)
T ss_dssp GG--------HHHHHHH--HTTT-TT---T--TTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTT
T ss_pred CC--------ccchhhh--hHHH-HH---H--HHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 00 0000000 0000 11 1 12111122211110000 011112222211222334456666666555
Q ss_pred -ccCHHHHHHHHHHHHHHHHHhhhcc--h-hhhHhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCC-ChHhHHHHHH
Q 000159 336 -DVNIAVAVEAIQAIGNLARGLRTHF--S-GSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCL-NLVDVVEDVK 409 (2013)
Q Consensus 336 -D~N~~V~~~A~~~l~~La~~L~~~f--~-~~~~~llp~LL~klkdkk-~~V~~aa~~aL~ai~~~~~~-~l~~il~~l~ 409 (2013)
+.+= .+..++..++.+.- ++-| . .....++..++..+.|+. ..||+.|..+|..++. |. ....+. .++
T Consensus 812 ~s~sW-~R~~~L~~lq~~~f--~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~--c~~~~~~~~-~li 885 (997)
T 1vsy_5 812 ALSSN-QTKLQLAFIQHFLS--AELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVH--NWKEEQPLL-SLI 885 (997)
T ss_dssp TSCSS-SHHHHHHHHHHHHH--HHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHH--SCCSHHHHH-HHH
T ss_pred cCCcH-HHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--cCCchhhHH-HHH
Confidence 4454 66666666655543 2222 1 233577888888999999 9999999999999986 65 433333 333
Q ss_pred HHhhcCC----------------hHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 410 TSVKNKV----------------PLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 410 ~~l~~Kn----------------p~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
..+..+- -..|-++.--|..++...|-.. +.+.++.++..|...++|+.+ |+..+.+++..|
T Consensus 886 ~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseF 964 (997)
T 1vsy_5 886 ERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEF 964 (997)
T ss_dssp HHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHH
T ss_pred HHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHH
Confidence 3333221 1455677777777887765432 245667778888888899666 999999999999
Q ss_pred HHHhCch
Q 000159 473 AKSVGMR 479 (2013)
Q Consensus 473 ~~~~Ge~ 479 (2013)
.+.--+.
T Consensus 965 krTH~D~ 971 (997)
T 1vsy_5 965 KKVRADT 971 (997)
T ss_dssp HHHTSTT
T ss_pred Hhccchh
Confidence 9876653
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.22 Score=60.81 Aligned_cols=189 Identities=9% Similarity=0.012 Sum_probs=128.6
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC-CCh--HHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDF--TEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~-~~~--~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (2013)
.+...+.+.+-..+..|...|..|.....-.. ..+ ...++.|.+.+ ...+..+...|+.+|..|+..-...-...
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~ 210 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 210 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHH
Confidence 46667778888889999999998875310000 000 12355666654 35567788899999999987332111122
Q ss_pred -hHhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000159 364 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 430 (2013)
Q Consensus 364 -~~~llp~LL~klkdkk~----~V~~aa~~aL~ai~~~--~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~ 430 (2013)
....+|.|++.+...+. .+++.+..+|..+..+ ++... ...++.|...|++.+..++.+++..|..+
T Consensus 211 ~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290 (354)
T ss_dssp HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35689999999987654 4888888888888752 01110 12577888889999999999999999886
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
.... ........ .-.+|.|+.++.+.++.+|+.|..+|..+...-++
T Consensus 291 a~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 291 SARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred hCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 5322 22221222 34789999999999999999999999988865443
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.50 E-value=19 Score=47.83 Aligned_cols=287 Identities=11% Similarity=0.069 Sum_probs=156.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHH
Q 000159 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 809 (2013)
Q Consensus 730 KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~L 809 (2013)
++..++.-++-.|+.+-..-+.....+..+.+.+.+. |.+.+...|.-|++.|.++ ...+.++..|..-.. .++.|
T Consensus 306 ~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~-L~~~~~~~~~~AvEgLaYL--Sl~~~VKe~L~~d~~-~L~~L 381 (778)
T 3opb_A 306 NVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINA-ISRRIVPKVEMSVEALAYL--SLKASVKIMIRSNES-FTEIL 381 (778)
T ss_dssp TSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHH--TTSSHHHHHHHHCHH-HHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH-HhcCCccHHHHHHHHHHHH--hCCHHHHHHHHhCHH-HHHHH
Confidence 4567787777777776654344456677899999887 8887766799999988755 567788877743322 22233
Q ss_pred HHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCC-CcccccccchHHHH------hcCCCChHHHHHHHHH-HHHHH
Q 000159 810 DAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP-REDISGKFTPTLVK------SLESPDWKVRLESIEA-VNKIL 881 (2013)
Q Consensus 810 e~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lp-r~dIs~~L~~~ll~------~l~d~~Wk~R~eale~-l~~il 881 (2013)
-+-+.. .... +. .-++.. -...-........+ ...+ .+|. .+.+ .-.|..+ ...+.+.. -...
T Consensus 382 v~llk~-~~d~-s~-~Ygal~--IL~NLt~~~~~~~~e~~~l-~~Lk-~~A~~~~p~~~~~d~~~-~~~~~v~~~~~~~- 452 (778)
T 3opb_A 382 LTMIKS-QKMT-HC-LYGLLV--IMANLSTLPEEXXXXXXXX-XXXX-XXXXXXXPAADKVGAEK-AAKEDILLFNEKY- 452 (778)
T ss_dssp HHHHTT-TCCT-TH-HHHHHH--HHHHTTCCCCCCCCCCC--------------------CCTHH-HHHHHHHHHHHHH-
T ss_pred HHHHhC-CCCc-hH-HHHHHH--HHHHhcCCCcccchhhhhh-hhhh-hhccccCcccCcccccc-cchHHHHHHHHHH-
Confidence 222221 1100 00 000000 00000000000000 0000 0000 0000 0011111 12222222 1112
Q ss_pred HhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHh-hh-hhHHHHHHHHhCCCcHH---HHHHH
Q 000159 882 EEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SS-KGVLSDILKCLGDNKKH---MRECT 956 (2013)
Q Consensus 882 ~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~-~~-~~llp~ll~~L~D~k~~---Vr~aa 956 (2013)
+.. ..+++.|...++..+..++..|+.++..|+.. +..+. .+ ...++.++..|.+.... +|..|
T Consensus 453 ------l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~A 521 (778)
T 3opb_A 453 ------ILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILG 521 (778)
T ss_dssp ------TTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHH
T ss_pred ------HHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHH
Confidence 221 34788888888888899999999999999744 33322 22 35789999999887655 89999
Q ss_pred HHHHHHHHHhcCc---------hhhHHHHHHHHhc-CCC-----------ChhhHHHHHHHHHHHhccCCCC------CC
Q 000159 957 LTVLDAWLAAVHL---------DKMVPYVTTALTD-AKL-----------GAEGRKDLFDWLSKQLTGLSGF------PD 1009 (2013)
Q Consensus 957 ~~aL~~i~~~~gl---------~~ll~~l~~~L~~-~k~-----------~p~~R~~~l~~L~~~l~~~~~~------~~ 1009 (2013)
..+|..+...+.. -..++.+...|.. +.. +...+.+++..|..... .+.. ..
T Consensus 522 A~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs-~~~n~~E~~r~~ 600 (778)
T 3opb_A 522 CRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLAS-SETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHH-CCSHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhc-CCcccchHHHHH
Confidence 9999988865532 1345667777762 210 00226777777765433 3210 11
Q ss_pred h-h--hhHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000159 1010 A-A--HLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 1010 ~-~--~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~ 1041 (2013)
+ . ..++.|...|.+.+..||.+|.+++..++.
T Consensus 601 Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 1 2 134457778888899999999999999986
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.29 E-value=2.2 Score=57.63 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=98.3
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHH
Q 000159 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~L 371 (2013)
..++|. |..|+-.|.-|-. ++..+.+..|.+.+. ..+..+...|+-.||.+..|.+.+ .+..|
T Consensus 369 k~~~~~-k~sA~aSLGlIh~------g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-------~~~lL 434 (963)
T 4ady_A 369 KAQNWA-KFTATASLGVIHK------GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-------TTDYL 434 (963)
T ss_dssp HCCTHH-HHHHHHHHHHHTS------SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-------HHHHH
T ss_pred ccchHH-HHHHHHHhhhhcc------CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-------HHHHH
Confidence 357776 4556666655432 223345666777775 456789999999999998877642 33444
Q ss_pred HHHhccCc--------HHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000159 372 LEKLKEKK--------PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (2013)
Q Consensus 372 L~klkdkk--------~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (2013)
.+.+.+.+ ..++..+.-+|.-++.. +.=+++++.|...+.+.++.++..+...|+.++-.+..... +
T Consensus 435 ~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G--S~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---i 509 (963)
T 4ady_A 435 KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG--SANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---I 509 (963)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---H
T ss_pred HHHHcCccccccccccHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---H
Confidence 44454433 56777766666655432 33467888888888877777787777777766544332211 2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 444 KDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
..++.. +++|.+..||..+.-+|+.+
T Consensus 510 ~~LL~~---~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 510 HDMFTY---SQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHH---HHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHH---HhccCcHHHHHHHHHHHHhh
Confidence 333333 33567788998888888866
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.3 Score=51.33 Aligned_cols=100 Identities=17% Similarity=0.292 Sum_probs=77.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh--hhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (2013)
+.+.||. .+-.|.++++. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 18 l~~~dw~----~ileicD~I~~-----~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 18 NTAEDWG----LILDICDKVGQ-----SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSSCCHH----HHHHHHHHHTT-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHC-----CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 4566895 34445555531 2233478999999999999999999999999999999999987543 55776
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000159 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLD 970 (2013)
Q Consensus 940 ~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2013)
.+.+.+....+.|++-+...+..|.....-+
T Consensus 89 el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 89 EVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 6666666677889999999999999887533
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=94.19 E-value=0.45 Score=51.28 Aligned_cols=99 Identities=13% Similarity=0.292 Sum_probs=75.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh--hhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (2013)
+.+.||.. +-.|.++++. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 28 ~~~~Dw~~----~leicD~I~~-----~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~ 98 (163)
T 1x5b_A 28 NTTEDWSL----IMDICDKVGS-----TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFAT 98 (163)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 34568963 4445666652 1233478999999999999999999999999999999999997432 44666
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000159 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
.+++.+.. ..+.|++-+...+..|....+-
T Consensus 99 el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 99 EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 66666654 5578999999999999998763
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=93.92 E-value=2.3 Score=54.99 Aligned_cols=308 Identities=14% Similarity=0.172 Sum_probs=174.6
Q ss_pred hhHHHHHHHHHhhhcChh---hhHHHHHHHHHHHhhhChhHH---HHHHHHHhhh-CCChhHHHHHHHHHHHHHHHhCCC
Q 000159 680 KCVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVS 752 (2013)
Q Consensus 680 ~~~~~il~~LveKlgD~K---~r~~a~e~L~~l~e~~~~~~V---l~~L~~~l~~-~KnpKv~~~~l~~L~~li~~fG~~ 752 (2013)
+.+...|+.|++++.+.. -|..|...|..++..+..... +..++..+.. ..+..+...+|+.|..++..-+..
T Consensus 17 qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 17 HTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp -CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred CChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 467788889999987754 377778888888776543322 4445554432 356777777787777765422110
Q ss_pred -----------CC---------ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHH
Q 000159 753 -----------HL---------KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (2013)
Q Consensus 753 -----------~l---------~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (2013)
.+ .-..-+..+..+ |+..+-.||-.++++|..|...-+...+..+ -.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l-L~~~df~vR~~alqlL~~L~~~r~~~~Q~~I-----------l~- 163 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL-LEEFDFHVRWPGVKLLTSLLKQLGPQVQQII-----------LV- 163 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-----------HH-
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHH-hcCccHHHHHHHHHHHHHHHhcCcHHHHHHH-----------Hh-
Confidence 00 002345666677 8999999999999999998765544333221 11
Q ss_pred HhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC-
Q 000159 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA- 891 (2013)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~- 891 (2013)
.+. =.+.|+..++|+.-.+|.||+-.|..+... |..|+.-
T Consensus 164 ---~p~-----------------------------------gi~~Lv~lL~d~rE~iRneallLL~~Lt~~-n~~iQklV 204 (651)
T 3grl_A 164 ---SPM-----------------------------------GVSRLMDLLADSREVIRNDGVLLLQALTRS-NGAIQKIV 204 (651)
T ss_dssp ---STT-----------------------------------HHHHHHGGGGCSSHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ---Ccc-----------------------------------cHHHHHHHHhCchHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 000 024678888999999999999999988863 3444421
Q ss_pred ChhhHHHHHHhcccch----hHHHHHHHHHHHHHHHHHhChhhHhhhh--hHHHHHHHHhCCCcH-------HHHH--HH
Q 000159 892 GTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKK-------HMRE--CT 956 (2013)
Q Consensus 892 ~~~eL~~~L~~rL~Ds----N~~V~~~Al~~l~~La~alg~~~~~~~~--~llp~ll~~L~D~k~-------~Vr~--aa 956 (2013)
-|...+..|...+... ...|+.-++.++..|... .+.-..|.+ .++|.+...|..... .++. .+
T Consensus 205 AFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~-N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~ 283 (651)
T 3grl_A 205 AFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN-NNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLM 283 (651)
T ss_dssp HHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHH
Confidence 1334455555555332 337788888888877744 211111111 234444444432211 1111 12
Q ss_pred HHHHHHHHHhcCc-------------hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCC------------Chh
Q 000159 957 LTVLDAWLAAVHL-------------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP------------DAA 1011 (2013)
Q Consensus 957 ~~aL~~i~~~~gl-------------~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~------------~~~ 1011 (2013)
..++..++...+. ..+++.+...+-..+....+|.+++..++..+...+... ...
T Consensus 284 L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p 363 (651)
T 3grl_A 284 LQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRP 363 (651)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEE
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcC
Confidence 2333333221110 113445556655554556789999998888776443211 111
Q ss_pred hhHHHHHhhcCCC-ChHHHHHHHHHHHHHH
Q 000159 1012 HLLKPASIAMTDK-SSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 1012 ~ll~pl~~~L~D~-~~dVR~aA~~~L~~l~ 1040 (2013)
.++..+...+++. .-++|-+|..|+..+.
T Consensus 364 ~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 364 AIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 1222244445554 4689999999998765
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.029 Score=64.86 Aligned_cols=187 Identities=12% Similarity=0.073 Sum_probs=108.3
Q ss_pred HHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhcc
Q 000159 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802 (2013)
Q Consensus 723 ~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lk 802 (2013)
+..+..+.+|.||..+...+ + ...+..+ +.|.++.||..|...+. .+.+..++.+-.
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l-------~---------~~~l~~L-~~D~~~~VR~~aA~~L~------~~~L~~ll~D~d 111 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS-------P---------VEALTPL-IRDSDEVVRRAVAYRLP------REQLSALMFDED 111 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------C---------GGGGGGG-TTCSSHHHHHHHHTTSC------SGGGGGTTTCSC
T ss_pred HHHHhcCCCHHHHHHHHHhC-------C---------HHHHHHH-ccCcCHHHHHHHHHHCC------HHHHHHHHcCCC
Confidence 33445788899998877643 1 1124556 88999999998886421 122333333333
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHH
Q 000159 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILE 882 (2013)
Q Consensus 803 p~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~ 882 (2013)
+......-..+ + .+.+...+.|.+|.+|..+...+
T Consensus 112 ~~VR~~aA~~l--------------------------------~--------~~~L~~L~~D~d~~VR~~aA~~l----- 146 (244)
T 1lrv_A 112 REVRITVADRL--------------------------------P--------LEQLEQMAADRDYLVRAYVVQRI----- 146 (244)
T ss_dssp HHHHHHHHHHS--------------------------------C--------TGGGGGGTTCSSHHHHHHHHHHS-----
T ss_pred HHHHHHHHHhC--------------------------------C--------HHHHHHHHcCCCHHHHHHHHHhc-----
Confidence 32222221110 0 01233446788888888876521
Q ss_pred hccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000159 883 EANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (2013)
Q Consensus 883 ~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~ 962 (2013)
. .+ .|...++|.+..|+..++.. ++. +.+...++|....||.++...+
T Consensus 147 ------~----~~---~l~~l~~D~d~~VR~~aa~~-------l~~----------~ll~~ll~D~d~~VR~aaa~~l-- 194 (244)
T 1lrv_A 147 ------P----PG---RLFRFMRDEDRQVRKLVAKR-------LPE----------ESLGLMTQDPEPEVRRIVASRL-- 194 (244)
T ss_dssp ------C----GG---GGGGTTTCSCHHHHHHHHHH-------SCG----------GGGGGSTTCSSHHHHHHHHHHC--
T ss_pred ------C----HH---HHHHHHcCCCHHHHHHHHHc-------CCH----------HHHHHHHcCCCHHHHHHHHHhC--
Confidence 1 11 23455678888888777653 221 2233566888888888887653
Q ss_pred HHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHH
Q 000159 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (2013)
Q Consensus 963 i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L 1036 (2013)
+. +.+...+.++ ++++|..+...+. .+.+..|.|.++.||.+|...|
T Consensus 195 -----~~----~~L~~Ll~D~--d~~VR~~aa~~l~----------------~~~L~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -----RG----DDLLELLHDP--DWTVRLAAVEHAS----------------LEALRELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp -----CG----GGGGGGGGCS--SHHHHHHHHHHSC----------------HHHHHHCCCCCHHHHHHHHCCC
T ss_pred -----CH----HHHHHHHcCC--CHHHHHHHHHcCC----------------HHHHHHccCCCHHHHHHHHHHh
Confidence 22 2344446666 5788888776631 1333445888899998887654
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.83 E-value=6.4 Score=45.46 Aligned_cols=127 Identities=12% Similarity=0.166 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc
Q 000159 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (2013)
Q Consensus 300 keR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (2013)
.+|.+.|.+++.++-+. .+.-|.++++.+.....|.+..|+...+..|++.++. + ..++..+++.|...+.|..
T Consensus 30 ~~kl~~L~qa~el~~~~--dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k-~~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS--CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV---K-VELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcc--CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 68999999999976321 2346788888888877799999999988888888732 2 3578899999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----cC--CC----h-------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000159 380 PTVAESLTQTLQAMHKA----GC--LN----L-------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (2013)
Q Consensus 380 ~~V~~aa~~aL~ai~~~----~~--~~----l-------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~ 432 (2013)
+.|...+..|...++.. -| .+ . ..+-..|+.-+++.|..+|..+++|+.+++.
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 99999888888888765 11 11 1 1233455666778999999999999999884
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.59 Score=59.05 Aligned_cols=187 Identities=9% Similarity=0.017 Sum_probs=127.4
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC-CCh--HHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDF--TEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~-~~~--~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (2013)
.+...+.+.+=..+..|...|..|.....-.. ... ...++.|.+.+ ...+..+...|+.+|..|+..-...-...
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 46666777778888899999988864210000 000 12355666654 45577889999999999998432211122
Q ss_pred -hHhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000159 364 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 430 (2013)
Q Consensus 364 -~~~llp~LL~klkdkk~----~V~~aa~~aL~ai~~~--~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~ 430 (2013)
....+|.|.+.+...+. .+++.+..+|..+..+ ++... ...++.|...|.+.+..++.+++..|..+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24689999999987654 3888888888887752 11110 12467788888999999999999999887
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000159 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (2013)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~ 476 (2013)
.... ........ .-.+|.|+.++...++.+|+.|..+|..+...-
T Consensus 407 a~~~-~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 407 SARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSSC-HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HcCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 5332 22222222 347899999999999999999999999887643
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.2 Score=62.31 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCC
Q 000159 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN 948 (2013)
Q Consensus 869 ~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~ 948 (2013)
+|..+.+.+..+ .. +.+. .+++..|...+....|.|+..++-.+..+ .++-.-...+++.++..|+|.
T Consensus 244 VRETaAQtLGaL-~h----Lp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D~ 311 (800)
T 3oc3_A 244 VRDAAAYLLSRI-YP----LIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSSP 311 (800)
T ss_dssp HHHHHHHHHHHH-TT----TSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHH-Hh----CChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCCc
Confidence 788899988876 32 2222 24444454555777899999999988888 222111678899999999999
Q ss_pred cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC-CCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChH
Q 000159 949 KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA-KLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSD 1027 (2013)
Q Consensus 949 k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~-k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~d 1027 (2013)
...||..|..+|--++..-.++.++..++..|.+- ..+ ..-..++..|+.....-........+++-++.+|.+.-.+
T Consensus 312 DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLS-ASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 312 DEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELIS-VSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp SHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCC-TTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHH
T ss_pred ccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccc-hhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHH
Confidence 99999999999998883334778888999998742 122 2245555556554432222111235555699999999999
Q ss_pred HHHHHHHHHHHHH
Q 000159 1028 VRKAAEACIVEIL 1040 (2013)
Q Consensus 1028 VR~aA~~~L~~l~ 1040 (2013)
||.++..++.+|.
T Consensus 391 VR~AVL~TL~tfL 403 (800)
T 3oc3_A 391 VRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987765
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.60 E-value=38 Score=48.08 Aligned_cols=129 Identities=12% Similarity=-0.000 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH----hhhcchhhhHhHHHHHHH
Q 000159 298 KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG----LRTHFSGSSRFLLPVLLE 373 (2013)
Q Consensus 298 kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~----L~~~f~~~~~~llp~LL~ 373 (2013)
+=..|++|-+.|..+-+.| ..+..+...|. -.+.+..|+..|+.++....+. +..+-..+++..+-..+.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p----~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~ 99 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC----PICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIA 99 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC----TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc----hHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 5557999988888876544 23333333332 1366788999999999887754 222222344433333333
Q ss_pred Hhc----cCcHHHHHHHHHHHHHHHHhc-CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000159 374 KLK----EKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (2013)
Q Consensus 374 klk----dkk~~V~~aa~~aL~ai~~~~-~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~ 433 (2013)
... +....|+..+..++..|+... ....++++++|...+++ ++..+..++.+|..+.+.
T Consensus 100 ~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 100 NGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 332 145889999999999999871 23467899999887766 677788888888877653
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.69 Score=49.02 Aligned_cols=99 Identities=16% Similarity=0.254 Sum_probs=77.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.||. ++-.|.++++. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 24 l~~~dw~----~ileicD~I~~-----~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 24 NKELDWA----SINGFCEQLNE-----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CSSCCHH----HHHHHHHHGGG-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHC-----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 4556895 44445555532 223347899999999999999999999999999999999999643 466888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCc
Q 000159 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
.+++.+.+ ....|++-+...+..|....+-
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 88888875 4578999999999999998753
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.64 Score=56.74 Aligned_cols=172 Identities=11% Similarity=0.062 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhcCCC-CCC--CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh--HhHHHHHHHHh
Q 000159 301 ERKDAVAELTKLASTKR-IAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEKL 375 (2013)
Q Consensus 301 eR~eaL~~L~~l~~~pk-i~~--~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~kl 375 (2013)
.|++|...|..|+.+.. ... ..++.+++.|...+...+..+...|+.+|..|+.+-.......+ ...+|.|++.+
T Consensus 100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL 179 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHH
Confidence 47788888888874321 000 01345678888888888889999999999999864111111111 25689999874
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC----h---HhHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000159 376 -KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 441 (2013)
Q Consensus 376 -kdkk~~V~~aa~~aL~ai~~~~~~~----l---~~il~~l~~~l~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 441 (2013)
......+++.+..+|..+..+ +.. + ...++.|...+.+.++ .++..++..|..+-.. ........
T Consensus 180 ~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 258 (354)
T 3nmw_A 180 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258 (354)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 556778888888888887653 111 1 2356777777876554 4888777766654321 12221111
Q ss_pred hh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 442 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
.. ...+|.++..|.+.+.+|++.|..+|+.+.
T Consensus 259 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 12 337899999999999999999999998775
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.89 Score=48.15 Aligned_cols=111 Identities=14% Similarity=0.236 Sum_probs=83.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.||. ..-.|..+++.. +..-.+.+.+|++||+..|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 14 l~~~dw~----~~leicD~I~~~-----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (148)
T 1mhq_A 14 MSEQDWS----AIQNFCEQVNTD-----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (148)
T ss_dssp CSSCCHH----HHHHHHHHHHHS-----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 4567895 344566666521 22247899999999999999999999999999999999999654 367888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000159 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (2013)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~ 981 (2013)
.+.+.+.+ ....|++-+...+..|....+-..-+..+...|.
T Consensus 85 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (148)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 88888765 3678999999999999998753332344444444
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.86 Score=49.49 Aligned_cols=110 Identities=14% Similarity=0.218 Sum_probs=82.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHHH
Q 000159 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSD 940 (2013)
Q Consensus 863 ~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp~ 940 (2013)
.+.||. .+-.|.++++.. +..-.+.+.+|+++|+..|.+|+..||.++..+++.+|..|... .+.|+..
T Consensus 27 ~~~Dw~----~ileicD~I~~~-----~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~e 97 (171)
T 1juq_A 27 RQEDWE----YIIGFCDQINKE-----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE 97 (171)
T ss_dssp SSCCHH----HHHHHHHHHHHS-----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred CCcCHH----HHHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 456895 444566666531 22347899999999999999999999999999999999999753 3557888
Q ss_pred HHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000159 941 ILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (2013)
Q Consensus 941 ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~ 981 (2013)
|++.+.. ....|++-+...+..|....+-..-+..+...|.
T Consensus 98 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 98 LIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 8887763 3578999999999999998864433444444444
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.69 Score=58.41 Aligned_cols=172 Identities=11% Similarity=0.069 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh--HhHHHHHHHHh
Q 000159 301 ERKDAVAELTKLASTKRIAPG---DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEKL 375 (2013)
Q Consensus 301 eR~eaL~~L~~l~~~pki~~~---~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~kl 375 (2013)
.+++|...|..|+.+..-... .++..++.|...+...+..+...|+.+|..|+.+-.......+ ...+|.|++.+
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lL 295 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHH
Confidence 467888888888743210000 1345678888888888888999999999999753111111111 25689999975
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC----h---HhHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000159 376 -KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 441 (2013)
Q Consensus 376 -kdkk~~V~~aa~~aL~ai~~~~~~~----l---~~il~~l~~~l~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 441 (2013)
......+++.+..+|..+..+ +.. + ...++.|...|.+... .++..++..|..+-.. ........
T Consensus 296 l~s~~~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 296 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 556778888888888888764 211 1 2356777777776543 4888877777654331 12222111
Q ss_pred hh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 442 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
.. ...+|.++.+|.+.+.+|++.|..+|+.+.
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 11 347899999999999999999999998875
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=92.68 E-value=32 Score=47.88 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=119.7
Q ss_pred HHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhcch-hhhHhHHHHHHHHhccC-----cHHHHHHHHHHHHH---HH
Q 000159 326 VCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLKEK-----KPTVAESLTQTLQA---MH 394 (2013)
Q Consensus 326 l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klkdk-----k~~V~~aa~~aL~a---i~ 394 (2013)
++..|.+.+. +.+-.....+|=++|.++..+....+ ++...+++.|+..+..+ |..++....-++.. |.
T Consensus 478 ~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl 557 (1073)
T 3gjx_A 478 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL 557 (1073)
T ss_dssp HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence 3445555554 34567778889999999877776544 78888888888776333 55555544334432 33
Q ss_pred HhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH-------HHhhhhHHHHHHHHhcCCCHHHHHHHHH
Q 000159 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV-------LKVHKDYVPICMECLNDGTPEVRDAAFS 467 (2013)
Q Consensus 395 ~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l-------~~~l~~l~p~l~k~l~Ds~~~VR~aA~~ 467 (2013)
.....-+..++..|+..+.+.++.|...++..+..+.+.+...-. .+++..++..+..+..+=.++-.-.-.+
T Consensus 558 ~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lye 637 (1073)
T 3gjx_A 558 RAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYE 637 (1073)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 221123567778888889999999999999999888887765421 2356777777777778878888888899
Q ss_pred HHHHHHHHhCchh-HHHHHhhccHHHHHHHHHHHh
Q 000159 468 VLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIA 501 (2013)
Q Consensus 468 al~~l~~~~Ge~~-~~~~l~~Ld~~~~kki~e~~~ 501 (2013)
+++.+....|... ...++..|=+..-.+..+.++
T Consensus 638 av~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~ 672 (1073)
T 3gjx_A 638 AVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQ 672 (1073)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998753 456666654444445555443
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=91.25 E-value=1.1 Score=50.60 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=60.5
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh-cccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHH
Q 000159 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2013)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~-rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ll 938 (2013)
....+....+|.-|+..|..+ .. ..+++..++. .-.|.++.|+..+...++.++...+++ ..+
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~---------~~-~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------~~l 141 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL---------SK-DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------KAL 141 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT---------TT-SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------TTH
T ss_pred HHHhCcchHHHHHHHHHHHhc---------cC-cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------HHH
Confidence 334555678888887744422 12 2677777777 447888888888888877777655544 256
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000159 939 SDILKCLGDNKKHMRECTLTVLDAWL 964 (2013)
Q Consensus 939 p~ll~~L~D~k~~Vr~aa~~aL~~i~ 964 (2013)
+.+..-+.|.+..||.+|...+.-|+
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~rpW~ 167 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLRIWT 167 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTCSGG
T ss_pred HHHHHHhcCCCHHHHHHHHHhhHHHh
Confidence 67777788888888888877765544
|
| >1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=90.98 E-value=1.7 Score=46.57 Aligned_cols=99 Identities=18% Similarity=0.352 Sum_probs=74.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc-chhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~ll 938 (2013)
+.+.||.. .-.|.++++. .+..-.+.+.+|++||+ ..|.+++..||.++..+++.+|..|... .+.|+
T Consensus 29 l~~~Dw~~----~leicD~I~~-----~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl 99 (157)
T 1elk_A 29 LQSEDWAL----NMEICDIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 99 (157)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHH
Confidence 34568963 4445556542 12334789999999997 6899999999999999999999999863 24477
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCc
Q 000159 939 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 939 p~-ll~~L~D---~k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
.. +++.+.. ....|++-+...+..|....+-
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 76 5666643 3457999999999999998753
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=10 Score=46.39 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc
Q 000159 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (2013)
Q Consensus 300 keR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (2013)
.+|.+.|.+++.|+-+. .+.-|.++++.|.....|.+..|+...+..|++.+.. + ..++..+++.|...+.|..
T Consensus 40 ~~Kl~~L~q~~EL~l~~--dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK--DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRDEN 113 (386)
T ss_dssp THHHHHHHHHHHHHHTT--CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 58999999999965211 2234667777777777799999999999999888853 2 2457888899999999999
Q ss_pred HHHHHHHHHHHHHHHHh------cCCC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000159 380 PTVAESLTQTLQAMHKA------GCLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (2013)
Q Consensus 380 ~~V~~aa~~aL~ai~~~------~~~~-----------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~ 432 (2013)
+.|...+..|...++.. .+.+ +..+-..|+..+++.|..+|..|+.|+.+++.
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 99988888888877744 0111 12334556666788999999999999999885
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=0.57 Score=49.63 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=75.1
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhh-----hhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChh
Q 000159 96 DAIAAKCLTGRPKTVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPK 167 (2013)
Q Consensus 96 ~~LveK~l~~k~~~k~~A~~~ll~~~E~-----~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k 167 (2013)
..+|+|+=+ +...+---+.++.+++. +.+..++..|.+.+.|+||+++.-+|..|-.++++=|... |.-+
T Consensus 13 ~~~IekATs--~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~ 90 (149)
T 3g2s_A 13 EARINRATN--PLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKF 90 (149)
T ss_dssp HHHHHHHSC--TTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSH
T ss_pred HHHHHHHcC--CCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhH
Confidence 445666532 22222223344444444 2467788899999999999999999999999999888632 4457
Q ss_pred HHHHhhhhhhcC------CChHHHHHHHHHHHHHHHhhCC
Q 000159 168 RILKMLPELFDH------QDQNVRASSKGLTLELCRWIGK 201 (2013)
Q Consensus 168 ~il~~l~~ll~~------~d~~VR~~a~~l~~ely~~lG~ 201 (2013)
.|+..|.+++.. .+..||+....++.+-+...+.
T Consensus 91 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 91 RFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 899999999964 6899999999998887776654
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=88.95 E-value=2.7 Score=47.58 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=107.2
Q ss_pred hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHhcCchh
Q 000159 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK-CLGDNKKHMRECTLTVLDAWLAAVHLDK 971 (2013)
Q Consensus 893 ~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~-~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ 971 (2013)
..+++........|..-.|+..|+.+++.+ . ....+++.+.. .-.|..=-||+.+..++..++...+++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~ 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH
Confidence 356666666666777778999999877765 1 23567777776 5567777899999999999998888888
Q ss_pred hHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHH
Q 000159 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (2013)
Q Consensus 972 ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~ 1050 (2013)
.++.+..-+.++ |+.+|..++..+.- +...+......+.+.| |-....|++.-||++..-.|..+.+.-+ +.+..
T Consensus 140 ~l~~~~~W~~d~--n~~VRR~Ase~~rp-W~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P-d~V~~ 215 (240)
T 3l9t_A 140 ALPIIDEWLKSS--NLHTRRAATEGLRI-WTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP-DLVKI 215 (240)
T ss_dssp THHHHHHHHHCS--SHHHHHHHHHHTCS-GGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHhhHH-HhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH-HHHHH
Confidence 888888888877 68999988888653 2222222233444555 4456699999999999999988766544 45666
Q ss_pred Hhcc
Q 000159 1051 NLKD 1054 (2013)
Q Consensus 1051 ~l~~ 1054 (2013)
++..
T Consensus 216 ~~~~ 219 (240)
T 3l9t_A 216 ELKN 219 (240)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6654
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.90 E-value=23 Score=40.89 Aligned_cols=153 Identities=11% Similarity=0.065 Sum_probs=106.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
+++.......-.+|.+.|.++++++-.. .|..|.++++.+.....|.+..|+......|.+.+.. =..++..
T Consensus 19 ~lln~A~~~~~~~kl~~L~qa~el~~~~----dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~----k~~l~~~ 90 (257)
T 3gs3_A 19 DWCNELVIASPSTKCELLAKVQETVLGS----CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----KVELLPH 90 (257)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTTT----TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHH
T ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHcc----CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 4555444422269999999999987532 3556788888888877899999999999988888733 2357788
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-cCCCChhhHHHHHHHHHHHhccCCCCCChhhhHH
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~-~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2013)
.++.+...|.|..+.|...++.|...++.. +...+. +++ .+..-..+|.|+... + .
T Consensus 91 ~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~---------~l~~i~~~~~-~~~~~~~~W~~m~~l----------K---~ 147 (257)
T 3gs3_A 91 VINVVSMLLRDNSAQVIKRVIQACGSIYKN---------GLQYLCSLME-PGDSAEQAWNILSLI----------K---A 147 (257)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---------HHHHHTTSSS-CCHHHHHHHHHHHHH----------H---H
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---------HHHHHhcCCC-CcchHHHHHHHHHHH----------H---H
Confidence 899999999999999999998888777543 333332 332 122236677777642 1 1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHH
Q 000159 1016 PASIAMTDKSSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~L~~l~ 1040 (2013)
-++..++..+..||-.+.+.+..++
T Consensus 148 ~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 148 QILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCcchHHHHHHHHHHHH
Confidence 2444566778889988887765543
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=88.23 E-value=0.53 Score=54.27 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=46.4
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHH
Q 000159 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (2013)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp 939 (2013)
..+.|.+|.+|.+++..+ . . ..|...+.|.++.|+..+...+ | +
T Consensus 177 ~ll~D~d~~VR~aaa~~l-----------~----~---~~L~~Ll~D~d~~VR~~aa~~l-------~-----------~ 220 (244)
T 1lrv_A 177 LMTQDPEPEVRRIVASRL-----------R----G---DDLLELLHDPDWTVRLAAVEHA-------S-----------L 220 (244)
T ss_dssp GSTTCSSHHHHHHHHHHC-----------C----G---GGGGGGGGCSSHHHHHHHHHHS-------C-----------H
T ss_pred HHHcCCCHHHHHHHHHhC-----------C----H---HHHHHHHcCCCHHHHHHHHHcC-------C-----------H
Confidence 456899999999987652 0 1 2355568999999998776653 3 1
Q ss_pred HHHHHhCCCcHHHHHHHHHHH
Q 000159 940 DILKCLGDNKKHMRECTLTVL 960 (2013)
Q Consensus 940 ~ll~~L~D~k~~Vr~aa~~aL 960 (2013)
..+..|.|....||.++...|
T Consensus 221 ~~L~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 221 EALRELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHCCCCCHHHHHHHHCCC
T ss_pred HHHHHccCCCHHHHHHHHHHh
Confidence 344556999999999987654
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=3.7 Score=46.66 Aligned_cols=98 Identities=18% Similarity=0.360 Sum_probs=71.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.||. .+-.|-+++.. .+..-.+.+.+|+++|+..|.+++..||.++..+++..|..|... .+.|+.
T Consensus 21 ~~~~dw~----~ileicD~I~~-----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 21 LLETDWE----SILQICDLIRQ-----GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp CSSCCHH----HHHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 3556885 44456666642 122347899999999999999999999999999999999988643 344555
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000159 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
.|.+.++. ....|++-+...+..|.....
T Consensus 92 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 92 ELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 54444432 445788888888888887764
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=87.97 E-value=0.91 Score=49.30 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=63.4
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC---CcChhHHHHhhhhhhc------CCChHHHHHHHHHHHHH
Q 000159 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFD------HQDQNVRASSKGLTLEL 195 (2013)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~---~i~~k~il~~l~~ll~------~~d~~VR~~a~~l~~el 195 (2013)
.+..++..|.+.+.|+||+++.-+|..|-.++++=|.. .|.=+.|+..|.+++. ..+..||+.+..++.+-
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 46678888999999999999999999999999986652 2344788999999986 35789999999998887
Q ss_pred HHhhCC
Q 000159 196 CRWIGK 201 (2013)
Q Consensus 196 y~~lG~ 201 (2013)
+...+.
T Consensus 127 ~~~f~~ 132 (171)
T 1juq_A 127 TMALPE 132 (171)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 777654
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=87.75 E-value=15 Score=44.93 Aligned_cols=142 Identities=8% Similarity=0.087 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCC
Q 000159 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947 (2013)
Q Consensus 868 k~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D 947 (2013)
.+|.+.|.++++++-. -.|+.+.++++.+...-.|.+..|+...+.+|.+.+.. -..++..+++.+...|.|
T Consensus 40 ~~Kl~~L~q~~EL~l~----~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d 111 (386)
T 3o2t_A 40 DSKITVLKQVQELIIN----KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRD 111 (386)
T ss_dssp THHHHHHHHHHHHHHT----TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcC
Confidence 4799999999998752 24556788999999888999999999999999888753 234567788889999999
Q ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-cCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCh
Q 000159 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSS 1026 (2013)
Q Consensus 948 ~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~-~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~ 1026 (2013)
..+.|...++.|...++ +.+...+. ++. ....-..+|.|+... +. -|+..++..|.
T Consensus 112 ~d~~V~K~~I~~~tslY---------pl~f~~i~~~~~-~~~~~e~~W~~m~~l----------K~---~Il~~~ds~n~ 168 (386)
T 3o2t_A 112 ENVNVVKKAILTMTQLY---------KVALQWMVKSRV-ISELQEACWDMVSAM----------AG---DIILLLDSDND 168 (386)
T ss_dssp SSHHHHHHHHHHHHHHH---------HHHHHHHHHC-C-CCHHHHHHHHHHHHH----------HH---HHHHGGGCSSH
T ss_pred CCHHHHHHHHHHHHHHH---------HHHHHHHhcCCC-cchhHHHHHHHHHHH----------HH---HHHHHhccCCc
Confidence 99999999888887764 33333333 321 123346778777642 11 24444677888
Q ss_pred HHHHHHHHHHHHHH
Q 000159 1027 DVRKAAEACIVEIL 1040 (2013)
Q Consensus 1027 dVR~aA~~~L~~l~ 1040 (2013)
.||-.+.+.+..++
T Consensus 169 GVrl~aiKFle~VI 182 (386)
T 3o2t_A 169 GIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 99988887775543
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=87.64 E-value=3.7 Score=44.10 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=61.6
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHh
Q 000159 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND-GTPEVRDAAFSVLAAIAKSV 476 (2013)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~D-s~~~VR~aA~~al~~l~~~~ 476 (2013)
.+..+.+..|..-++++||.+...+|..|..|+.++++..-... -+.++..+++.+.. .++.||+...+.+......+
T Consensus 48 ~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 48 NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 44556666777778899999999999999999999986532111 14566666666654 77899999999999888888
Q ss_pred Cch
Q 000159 477 GMR 479 (2013)
Q Consensus 477 Ge~ 479 (2013)
+..
T Consensus 128 ~~~ 130 (163)
T 1x5b_A 128 QKD 130 (163)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=86.25 E-value=2.2 Score=45.19 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=63.2
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHHhhhhhhcC------CChHHHHHHHHHHHHH
Q 000159 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLEL 195 (2013)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~~------~d~~VR~~a~~l~~el 195 (2013)
.+..++..|.+.+.|+||+++.-+|..|-.++++=|... |.=+.|+..|.+++.. .+..||+....++.+-
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 466788888999999999999999999999999877632 3447899999999874 5889999998888777
Q ss_pred HHhhCC
Q 000159 196 CRWIGK 201 (2013)
Q Consensus 196 y~~lG~ 201 (2013)
+...+.
T Consensus 115 ~~~f~~ 120 (148)
T 1mhq_A 115 TVWFPE 120 (148)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 666543
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=85.62 E-value=5 Score=41.94 Aligned_cols=96 Identities=15% Similarity=0.222 Sum_probs=72.2
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh--HhHHHHH
Q 000159 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVL 371 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~L 371 (2013)
+.+.+|.- +.++..+++.. +..-.+.+++|+++|+..|.++...|+.++..+.+.-|..|...+ +.++..|
T Consensus 18 l~~~dw~~----ileicD~I~~~---~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el 90 (140)
T 3ldz_A 18 NTAEDWGL----ILDICDKVGQS---RTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEV 90 (140)
T ss_dssp SSSCCHHH----HHHHHHHHTTS---TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHCC---CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH
Confidence 56788863 44455555421 223468899999999999999999999999999999999887543 5666666
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHh
Q 000159 372 LEKLKEKKPTVAESLTQTLQAMHKA 396 (2013)
Q Consensus 372 L~klkdkk~~V~~aa~~aL~ai~~~ 396 (2013)
.+.++...+.|++.+...+..|...
T Consensus 91 ~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 91 SNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHH
Confidence 6666556778888888888887754
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.03 E-value=8.8 Score=43.74 Aligned_cols=145 Identities=10% Similarity=-0.001 Sum_probs=95.0
Q ss_pred HHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhcchh-hhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC---CC
Q 000159 327 CRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC---LN 400 (2013)
Q Consensus 327 ~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~---~~ 400 (2013)
++.|.+.+. |....+...|+.+|..|+.+-...-.. .-...+|.|+..|+.....+++.+..||..+...+. ..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555666 333378888888999888653221111 122467999999999999999999999999875200 00
Q ss_pred h--HhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHHHHh-------cC---------CCHH
Q 000159 401 L--VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICMECL-------ND---------GTPE 460 (2013)
Q Consensus 401 l--~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~k~l-------~D---------s~~~ 460 (2013)
+ ...+|.|+..|. ++++.++..+...|..+-.... +.. ..+.-+|.|+..+ .| .+++
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~---i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL---MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH---HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH---HHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 1 124677888887 5789999998877776532211 222 2344566666543 12 3779
Q ss_pred HHHHHHHHHHHHHH
Q 000159 461 VRDAAFSVLAAIAK 474 (2013)
Q Consensus 461 VR~aA~~al~~l~~ 474 (2013)
|+..|..||..+..
T Consensus 167 v~~na~~~L~nLss 180 (233)
T 3tt9_A 167 IFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987754
|
| >3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.88 E-value=4.7 Score=42.76 Aligned_cols=99 Identities=16% Similarity=0.338 Sum_probs=72.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHhChhhHhhh--hhHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D-sN~~V~~~Al~~l~~La~alg~~~~~~~--~~ll 938 (2013)
+.+.||. .+-.|.++++. .+..-.+.+.+|++||.. .|.+++..||.++..+++.+|..|...+ +.|+
T Consensus 29 l~~~Dw~----~ileicD~In~-----~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl 99 (152)
T 3rru_A 29 VQTEDWG----QFMHICDIINT-----TQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFV 99 (152)
T ss_dssp CCSCCHH----HHHHHHHHHHH-----STTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCccHH----HHHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhH
Confidence 4556896 45556666652 122347899999999984 5889999999999999999999997543 4566
Q ss_pred HH-HHHHhCCC---cHHHHHHHHHHHHHHHHhcCc
Q 000159 939 SD-ILKCLGDN---KKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 939 p~-ll~~L~D~---k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
.. +++.+.++ ...|++-+...+..|.....-
T Consensus 100 ~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 100 KENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp TTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 54 55555543 346999999999999987753
|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 | Back alignment and structure |
|---|
Probab=81.05 E-value=6.1 Score=44.64 Aligned_cols=98 Identities=16% Similarity=0.324 Sum_probs=71.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.||.. +-.|-+++.. .+..-.+.+.+|+++|+..|.+++..||.++..+++..|..|... .+.|+.
T Consensus 18 ~~~~dw~~----~leicd~i~~-----~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~ 88 (220)
T 1dvp_A 18 RLEPDWPS----ILLICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (220)
T ss_dssp CSSCCHHH----HHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCcCHHH----HHHHHHhhcC-----CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHH
Confidence 34568974 3345555542 122347899999999999999999999999999999999988643 233555
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000159 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
.+...+++ ....|++.+...+..|.....
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 89 MFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 55555543 446789888888888887764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2013 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-15 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 6e-14 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-09 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-07 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 1e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 8e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 9e-04 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 4e-05 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 3e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 0.001 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.6 bits (197), Expect = 2e-15
Identities = 153/1079 (14%), Positives = 314/1079 (29%), Gaps = 102/1079 (9%)
Query: 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 381
+V + + KL+ D N V A++ +G L ++ + ++ L + K
Sbjct: 42 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQ 98
Query: 382 VAESLTQTLQAM------HKAGCLNLVDVVEDV-----KTSVKNKVPLVRSLTLNWVTFC 430
+ + + L+ + +G +V + + K + V+ L+ +
Sbjct: 99 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 158
Query: 431 IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ ++ H + + L VR L + S G IE L
Sbjct: 159 LSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLS 217
Query: 491 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550
S + S G + + F +
Sbjct: 218 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 277
Query: 551 APASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVG 608
+ + V P + K T +D + E +++ D
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 609 QLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
WK R A L V + L + + + + E+NV+ +V
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKA-----DVF 392
Query: 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
+ + + LC E+ T + I + L+K MK
Sbjct: 393 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ--SQVPN---------IVKALHKQMK 441
Query: 728 DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGL--QSSAAATRNATIKLLGA 785
+ K+ K + V + + ++ L +SS++ + + L
Sbjct: 442 E-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 500
Query: 786 LHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 501 ILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 560
Query: 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
+ +K L++ D E E + + + +L L+ L
Sbjct: 561 YIK-----DLFTCTIKRLKAADI--DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL 613
Query: 905 -YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLDA 962
N+ + T+ L +A + + G IL N++ ++ TL+ LD
Sbjct: 614 ERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDI 673
Query: 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT 1022
+ + D + +L L D S +T
Sbjct: 674 LIKNYSDSLT------------------AAMIDAVLDELPPLISESDMHVSQMAISF-LT 714
Query: 1023 DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSK 1082
+ + IL L+ A+ + + + G + + +
Sbjct: 715 TLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR 774
Query: 1083 SSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDR 1142
+ S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 775 MLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTDS 830
Query: 1143 ERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR 1202
R+ + + E+ + + + +L +L E ++
Sbjct: 831 IRL---------LALLSLGEVGHHIDLSGQLELKSVIL-----------EAFSSPSEEVK 870
Query: 1203 KDIIEVLDILLRW-------FVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAA 1255
L + FVLQ S +L L E+ + G +
Sbjct: 871 SAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG---LKPYVE 927
Query: 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLV 1315
L++ E R + E ++ T LP + L S ++ R V V
Sbjct: 928 NIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAV 986
Query: 1316 GFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
F I H I LK+ + D +R+ AL T + I + +
Sbjct: 987 KFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.2 bits (183), Expect = 6e-14
Identities = 135/1055 (12%), Positives = 295/1055 (27%), Gaps = 111/1055 (10%)
Query: 18 DRLLHKNWKVRNEANIDL-AALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
+++ + R A DL L D+ R++ + K + D N VQ+ A+ L
Sbjct: 10 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 69
Query: 77 IA-YLKAADADAGRYAKEVCDA----------IAAKCLTGRPKTVEKAQAVFMLWVELEA 125
K + +C I++ L + A + L +
Sbjct: 70 GPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-- 127
Query: 126 VDVFLDVMEKAIKNKVAKAV-VPAIDVMFQALSEFGAKIIPP-KRILKMLPELFDHQDQN 183
+ AI + +V + A+D+M LS G ++ IL L
Sbjct: 128 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLA 187
Query: 184 VRASSKGLTLELCRWIGKDPVKTILFEKMRD-TMKKELEVELVNVSGTARPTRKIRAEQD 242
VR + L G ++ + + + + + A +R+
Sbjct: 188 VRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG 247
Query: 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSER 302
+ L + + ++ + + E + + P + +K +
Sbjct: 248 EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 307
Query: 303 KDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362
+ E + D + D++ V A + + +
Sbjct: 308 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 367
Query: 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL----------------------- 399
+ + P L+ + KE++ V + ++ K
Sbjct: 368 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 427
Query: 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459
+ ++V+ + +K K R N +T + A+ + VP + LND +
Sbjct: 428 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSS 486
Query: 460 --EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517
++ A S L I + + ++ L + + + A + V+
Sbjct: 487 SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE-ALLVTQQLVK 545
Query: 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKL 577
+ +++ + + K+ G S L
Sbjct: 546 VIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 605
Query: 578 T----------EAPEDVEPSEMSLEEIESRLGSLIPADTVGQL--------KSAVWKERL 619
+ + +L I + +G+ + +L
Sbjct: 606 PNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKL 665
Query: 620 EAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679
+S+L ++ + + I L + P SE ++ V Q I + LA
Sbjct: 666 GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 725
Query: 680 KCVVLCLLGISERVADIKTRAHAMKCLTTF--------SEAVGPGFIFERLYKIMKDHKN 731
K L + V + A+ + F + +G + L +
Sbjct: 726 KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 785
Query: 732 PKVLSEGILWMVSAVEDFG--VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
+ + V + F +D S + R + LG +
Sbjct: 786 ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHH 845
Query: 790 VGPDIKGFLADVKPALLSALDAEYEK------------NPFEGTVVPKKTVRASESTSSV 837
+ ++K +L A + E+ + ++ S
Sbjct: 846 IDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKR 902
Query: 838 SSGGSDGLPR----------EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
L + L+K E + R E + K+ +
Sbjct: 903 QYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET 962
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
+ P L+G L + + + + S ++ K + D LK L D
Sbjct: 963 LLPR--------LKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1014
Query: 948 NKKHMRECTLTVLDA------WLAAVHLDKMVPYV 976
++R L ++ L LD ++P++
Sbjct: 1015 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 2e-11
Identities = 107/978 (10%), Positives = 275/978 (28%), Gaps = 80/978 (8%)
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917
L++ + S D R + + L++ + ++ ++ + L D N + +
Sbjct: 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67
Query: 918 TLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL------------DAWLA 965
LG + S + E + ++ + + +K+ +R+ + L + LA
Sbjct: 68 CLGPLVSKVK---EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 966 AVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTD 1023
A K+ +T+A+ + + + D ++ L+ G +L +T
Sbjct: 125 ANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083
VRK + ++ + G ++ +L + N + + +
Sbjct: 184 PRLAVRKRTIIALGHLVMSCGNIVFVDLIEH--------LLSELSKNDSMSTTRT-YIQC 234
Query: 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1143
+ + + A + + ++ + I V +V D ++ + E
Sbjct: 235 IAAISRQAGHRIGEYLEKIIPLVV---------KFCNVDDDELREYCIQAF--------E 277
Query: 1144 RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRK 1203
V R K P + I + + Y + + DG + +
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 1204 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVE 1263
D ++ + R +T + EF + L E+ A +
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 397
Query: 1264 KSGHNIEKVREKMRELTKQIVNFYSA------TKTLPYILEGLRSKNNRTRIECVDLVGF 1317
+ + + + ++ K+ +TR C +++
Sbjct: 398 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTE 457
Query: 1318 LI---DHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
L+ + L I + ++ AL+ L ++ +
Sbjct: 458 LVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL 517
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
+K+ + + L + + + + +
Sbjct: 518 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAAD 577
Query: 1435 MRRNYGHSELHVERS---------------IMPRALASVSGPTDWNEAL----DIISFGS 1475
+ + + + L + + I
Sbjct: 578 IDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPL 637
Query: 1476 PEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRS 1535
+ LA + ++ + D L+ ++ + ++
Sbjct: 638 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL 697
Query: 1536 CKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLML 1595
+ Q + A + S I+ +L L V L A+
Sbjct: 698 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQ 757
Query: 1596 KILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQS 1655
++ ++ L+ +L S+ + +S+ + + + L C + V+
Sbjct: 758 ALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ 817
Query: 1656 TIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLR--MVKTVLHELVKLRGAAIKGH 1713
I DV R SI + E + L+ +++ +++ AA
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 877
Query: 1714 LSMVPIDMKPQ-PIILAYIDLNLETLAAARM-----LTSTGPGGQTHWGDSAANNPTSAT 1767
S+ ++ P +L I + ++S G + ++
Sbjct: 878 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 937
Query: 1768 NSADAQLKQELAAIFKKI 1785
A+ + +A K+
Sbjct: 938 ECAEEGTRNVVAECLGKL 955
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.3 bits (160), Expect = 3e-11
Identities = 117/1057 (11%), Positives = 273/1057 (25%), Gaps = 126/1057 (11%)
Query: 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRI-------RELGPLFKKTVADSNAPVQD 70
+L ++R+ ++I L + + + G L + VQ
Sbjct: 90 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQL 149
Query: 71 KALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFL 130
+ALD + L + + + + + R ++ V VF+
Sbjct: 150 EALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV 209
Query: 131 DVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP-----KRILKMLPELFDHQDQNVR 185
D++E + + Q ++ + ++I+ ++ + + D +R
Sbjct: 210 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 269
Query: 186 ASSKGLTLELCR-------------------------WIGKDPVKTILFEKMRDTMKKEL 220
R D D +
Sbjct: 270 EYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD 329
Query: 221 EVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 280
+ S + K+R K L + + ++ + + +
Sbjct: 330 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSP----ALISRFKEREE 385
Query: 281 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF-TEVCRTLKKLITDVNI 339
+ + +K T+ + + + T + + L K + + ++
Sbjct: 386 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 445
Query: 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQAMHKAG 397
+ L L + L+P ++ L +K + + L +
Sbjct: 446 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 505
Query: 398 CLNLVDVVED-----VKTSVKNKVPLVRS---LTLNWVTFCIETSSKAAVLKVHKDYVPI 449
+ V V + + S L + I + + +
Sbjct: 506 SPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDL 565
Query: 450 CMECLN-----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI---- 500
+ D EV++ A S + I ++ L + + +L I
Sbjct: 566 FTCTIKRLKAADIDQEVKERAISCMGQIICNL-GDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 501 -AGSGGDVATGTSSARVQTSGGSVPSV----EASESSFVRKSAASMLSGKRPVSAAPASK 555
+ +A ++ G + ++ S L + +
Sbjct: 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 684
Query: 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEP-SEMSLEEIESRLGSLIPADTVGQLKSAV 614
+ + A + +++ + GS++ +
Sbjct: 685 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744
Query: 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML---PGWSEKNVQVQQQVIEVINYLA 671
L A+ Q + + L+R++ + + Q + + + L
Sbjct: 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804
Query: 672 ATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK--DH 729
K V + + + R A+ L + E I++
Sbjct: 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 864
Query: 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
+ +V S +A G + + S L +
Sbjct: 865 PSEEVKS-------AASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSA 917
Query: 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR-- 847
+K ++ ++ LL + E + ++ L +
Sbjct: 918 SVVGLKPYVENIWALLLKHCECAEE---------------------GTRNVVAECLGKLT 956
Query: 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS 907
P L L S R + AV + + + I P G L D
Sbjct: 957 LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDP 1015
Query: 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR-------------- 953
+ N+ L+T + A + VL + K+ +R
Sbjct: 1016 DLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDG 1075
Query: 954 --------ECTLTVLDAWLAAVHLDKMVPYVTTALTD 982
EC T+LD+ L + + + + +V L D
Sbjct: 1076 LDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD 1112
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.3 bits (147), Expect = 1e-09
Identities = 122/1002 (12%), Positives = 283/1002 (28%), Gaps = 99/1002 (9%)
Query: 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472
+ R + N + ++ S + V + ++ L D EV++ A L +
Sbjct: 13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPL 72
Query: 473 AKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532
V +E ++ L + M+ S+
Sbjct: 73 VSKVKEYQVETIVDTL-------CTNML----------------------------SDKE 97
Query: 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGK-QETSKLTEAPEDVEPSEMSL 591
+R ++ L K + P + G + + K +G+ E + +
Sbjct: 98 QLRDISSIGL--KTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 155
Query: 592 EEIESRLGSLIPAD-------TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644
++ SR G L+ + QL S R I +L V + N V+++
Sbjct: 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-IVFVDLIEH 214
Query: 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHA 702
L+ L ++ + I+ I ++ A + + + + + + R +
Sbjct: 215 LLSELS--KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYC 272
Query: 703 MKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL 756
++ +F I K + N E
Sbjct: 273 IQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDE-----DEDENAMDADGGDD 327
Query: 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816
D + + + R A K L A+ + F V PAL+S E
Sbjct: 328 DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 387
Query: 817 PFEGTV-------VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV 869
+ + ++ G + + L K ++ K
Sbjct: 388 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT 447
Query: 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGP 928
R + +++ + + G + S+ NL + L L + P
Sbjct: 448 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP 507
Query: 929 -AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------------HLDKMVP 974
+ ++ ++ C+GD + L V + + ++ +
Sbjct: 508 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFT 567
Query: 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEA 1034
L A + E ++ + + + L + K+ R
Sbjct: 568 CTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVK 627
Query: 1035 CIVEILRAGGQETIEKNLKDIQ---GPALALILERIKLNGASQVSMGPTSKSSSKVPKSA 1091
+ I + + + L + L +KL S + + + S S
Sbjct: 628 ALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI 687
Query: 1092 SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 1151
+ + S + ++ A + + + + R + +
Sbjct: 688 DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGG 747
Query: 1152 FEDPRIEQIQEL-----ENDMMKYFREDLHRRLLSTD-FKKQVDGLEMLQKALPSIRKDI 1205
++ Q L N L + S + K + ++ +
Sbjct: 748 ALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC 807
Query: 1206 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1265
+ ++ F+ S +T +++L L +L + G+ + S ++E
Sbjct: 808 PKEGPAVVGQFIQDVKNSRSTDSIRLLALL-----SLGEVGHHIDLSGQLELKSVILEAF 862
Query: 1266 GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE 1325
E+V+ I + + LP++L+ + S+ R + L +
Sbjct: 863 SSPSEEVKSAASYALGSISV-GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG 921
Query: 1326 ISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
+ +++ ++ + R L I E +
Sbjct: 922 LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL 963
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 2e-06
Identities = 59/519 (11%), Positives = 146/519 (28%), Gaps = 63/519 (12%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVA---------DSN 65
P + +K+ +EA + L I + P K D +
Sbjct: 520 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 579
Query: 66 APVQDKALDALIAYLKAADADAGRYAKEVC--------DAIAAKCLTGRPKTVEKAQAVF 117
V+++A+ + + + G + I + +
Sbjct: 580 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI 639
Query: 118 MLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177
L L L + + + + A+D++ + S+ + + ++ P L
Sbjct: 640 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPP-LI 698
Query: 178 DHQDQNVRASSKGLTLELCRWIGK----------DPVKTILFEKMRDTMKKELEVELVNV 227
D +V + L + + + ++ + ++
Sbjct: 699 SESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQA 758
Query: 228 SGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEK 287
+ + L + S+ ++S + + P + + +
Sbjct: 759 LVVTGTNNLGYMDLLRMLTGPVYSQSTAL-THKQSYYSIAKCVAALTRACPKEGPAVVGQ 817
Query: 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347
+ S R A+ L ++ I E+ + + + + V A
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVG--HHIDLSGQLELKSVILEAFSSPSEEVKSAASY 875
Query: 348 AIGNLARGLRTHF----------SGSSRFLL-----PVLLEKLKEKKPTVAESLTQTLQA 392
A+G+++ G + ++LL ++ E++ L
Sbjct: 876 ALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK 935
Query: 393 MHK----------AGCL------NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436
+ A CL + ++ +K + + RS + V F I +
Sbjct: 936 HCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQ 995
Query: 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
+ K+ + ++ L D VR A + A +
Sbjct: 996 PIDPLL-KNCIGDFLKTLEDPDLNVRRVALVTFNSAAHN 1033
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 2e-07
Identities = 73/598 (12%), Positives = 165/598 (27%), Gaps = 40/598 (6%)
Query: 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 827
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERT--RSELLPFLTDTIYDEDE------------- 63
Query: 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V + + + G P + P L + VR +++E++ I E +
Sbjct: 64 VLLALAEQLGTFTTLVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS-- 119
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
P+ F L RL + + G + + D
Sbjct: 120 --PSDLEAHFVPLVKRLAGGDW--FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007
+ +R + L + + LD + + ++ + L +
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 1008 PD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065
+ A ++ A DKS VR E+ +A G E + +L +
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 1066 RIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
++ + +V + S+ + + +S K A IM +
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 1126 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQEL--ENDMMKYFREDLHRRLLSTD 1183
+ + ++ + ++ + E+ + + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 1184 FKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243
++ ++ +E + + + + L L +L +
Sbjct: 416 WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA--WLVDHVYAIREAATSNLKKLVEKFG 473
Query: 1244 DEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS----ATKTLPYILEG 1299
E A +P ++ SG R + LP +L
Sbjct: 474 KEWAH------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRM 527
Query: 1300 LRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLAT 1357
R + + Q + I+ LT ++D +++ A L
Sbjct: 528 AGDPVANVRFNVAKSLQKIGPILDNSTL-QSEVKPILEKLTQDQDVDVKYFAQEALTV 584
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 1e-06
Identities = 56/467 (11%), Positives = 138/467 (29%), Gaps = 15/467 (3%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKAL 73
+P RL +W + L ++C EL F+ +D V+ A
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KAELRQYFRNLCSDDTPMVRRAAA 185
Query: 74 DAL--IAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLD 131
L A + D + + + + R VE + L + + + +
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRA---SS 188
+ +A ++K + D + G +I + + D + + A
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 189 KGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQE 248
K L ++ + + + +++ + + ++ I + +
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 249 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
+ E ++ +D V + L+ E + KW R +
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368
+ LA + D ++ + D A+ A + L ++ ++
Sbjct: 426 MPLLAGQLGVEFFDE-KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATII 482
Query: 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNW 426
P +L + + + + + ++ ++ V + V VR
Sbjct: 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKS 542
Query: 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473
+ + + + PI + D +V+ A L ++
Sbjct: 543 LQKIGPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 8e-06
Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 11/195 (5%)
Query: 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN 908
+S P +V+ E W+VRL IE + + + L D
Sbjct: 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL---VDHV 454
Query: 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968
+ A L + G E + ++ +L GD R TL ++
Sbjct: 455 YAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512
Query: 969 LD----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024
D M+P V D A R ++ L K L + + D+
Sbjct: 513 QDITTKHMLPTVLRMAGDPV--ANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQ 570
Query: 1025 SSDVRKAAEACIVEI 1039
DV+ A+ + +
Sbjct: 571 DVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 9e-04
Identities = 81/612 (13%), Positives = 171/612 (27%), Gaps = 44/612 (7%)
Query: 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNI 339
D L P+ + ++ R +++ +L+ +A + +E+ L I D
Sbjct: 7 DSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIALALGVER-TRSELLPFLTDTIYD-ED 62
Query: 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399
V + + +G + LLP L ++ V + ++L+A+ +
Sbjct: 63 EVLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI--SHEH 118
Query: 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459
+ D+ VK + V + +D TP
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTP 178
Query: 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519
VR A A +G ++ + S + + V A V +
Sbjct: 179 MVR-------RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231
Query: 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSA---APASKKGGPVKPSAKKDGSGKQETSK 576
+ + AA S + +K + + Q K
Sbjct: 232 QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291
Query: 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW-----KERLEAISSLRQQVEA 631
EA S E E+ + Q+ + + + +
Sbjct: 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351
Query: 632 VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISE 691
L + I L L ++ +V+ +I ++ + +L +
Sbjct: 352 SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA 411
Query: 692 RVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS--EGILWMVSAVEDF 749
A + R ++ + + +G F E+L + V + E + + +
Sbjct: 412 EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471
Query: 750 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 809
+I R T+ + L + G DI + P +L
Sbjct: 472 FGKEWAHATIIPKVLA-MSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMA 528
Query: 810 -DAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWK 868
D V ++ + + L + + P L K + D
Sbjct: 529 GDPVAN--------VRFNVAKSLQKIGPI-------LDNSTLQSEVKPILEKLTQDQDVD 573
Query: 869 VRLESIEAVNKI 880
V+ + EA+ +
Sbjct: 574 VKYFAQEALTVL 585
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 4e-05
Identities = 51/336 (15%), Positives = 116/336 (34%), Gaps = 29/336 (8%)
Query: 614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ----QQVIEVINY 669
+ + LEAI + Q ++ Q D+S EIL ++ + E + V+ ++ + +
Sbjct: 145 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEF 203
Query: 670 LAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDH 729
A K ++ ++ ++ + + D + R A++ L Y+ M+ +
Sbjct: 204 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI---------MSLYYQYMETY 254
Query: 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
P I + V+ ++ + C + + A+ + KF
Sbjct: 255 MGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 312
Query: 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRED 849
+L + L+ D + + + + + +D
Sbjct: 313 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT-----------CCEDD 361
Query: 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909
I P + + +++PDW+ R ++ A ILE + L + D +
Sbjct: 362 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 421
Query: 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945
+ T+G + + A L+ +L+CL
Sbjct: 422 VVRDTAAWTVGRICELLPEAAINDV--YLAPLLQCL 455
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 3e-04
Identities = 70/725 (9%), Positives = 202/725 (27%), Gaps = 57/725 (7%)
Query: 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
I + P++ + +++A+ D + H +L+ D +
Sbjct: 95 QIKTNALTALVS-IEPRIAN-AAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVK 152
Query: 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836
A++ LG + + P + ++ +L A+ + V + A + +
Sbjct: 153 RASLLALGYMCESADPQSQALVSSSNN-ILIAIVQGAQSTETSKAVR----LAALNALAD 207
Query: 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGEL 896
+ + RE + ++ ++ D +V+ + + KI+ + ++P L
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL 267
Query: 897 FGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECT 956
+ + N + T+ + + ++ L+ +++
Sbjct: 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ-FPQSPLQSYNFALSSIKDVV 326
Query: 957 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016
+L+ + + + A L + L L
Sbjct: 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLE-------------F 373
Query: 1017 ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVS 1076
+T + R+AA I+ + + L L +N S
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL------MNDQSLQV 427
Query: 1077 MGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKD 1136
T+ ++ S + + G + ++ + + +
Sbjct: 428 KETTAWCIGRIADSVAESIDPQ-QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE 486
Query: 1137 SNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGL-EMLQ 1195
+ + L + E R + V+ + +
Sbjct: 487 ATPSPIYNFY----------PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536
Query: 1196 KALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTL-RDEGYSLTESEA 1254
+ SI +++ L + Q + L ++ + + + R S+
Sbjct: 537 ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD 596
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT------KTLPYILEGLRSKNNRTR 1308
+ + + + + + PY+L+ L ++
Sbjct: 597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656
Query: 1309 IECVDLVGFLIDHHGAEISGQLKSL--QIVASLTAER-DGEIRKAALNTLATGYKILGED 1365
I V + + + + ++ + ++ E++ A L+ +G D
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716
Query: 1366 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1425
Y+ + + + + + E + + + +V + I D
Sbjct: 717 FIPYLNDIMALCVAAQNTKPENGTLEAL--------DYQIKVLEAVLDAYVGIVAGLHDK 768
Query: 1426 SQSVS 1430
+++
Sbjct: 769 PEALF 773
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 0.001
Identities = 70/591 (11%), Positives = 171/591 (28%), Gaps = 61/591 (10%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY----DSNKNL 911
P L L+S D+ + A+ KI E++ + + + + S+ +
Sbjct: 129 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 188
Query: 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA------ 965
+ + + A+ ++ GD + +R+ L L
Sbjct: 189 RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 248
Query: 966 AVHLDKMVPYVTTALTDAKLG-AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI-AMTD 1023
H+ +V Y+ D A + + L++Q L P + M
Sbjct: 249 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 308
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083
D+ + ++ I + A + I+ +
Sbjct: 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTI 368
Query: 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1143
S + S ++P + ++ ++ V+ +L + + +
Sbjct: 369 SDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 428
Query: 1144 RM----------VVRRFKFEDPRIEQI-------------QELENDMMKYFREDLHRRLL 1180
M +++ + + I + + +K +L +R+L
Sbjct: 429 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 488
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
++ + Q +++ L +L V F K LL + + + L D
Sbjct: 489 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 548
Query: 1241 TLRD-------------------EGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTK 1281
++ + + L CL + + +
Sbjct: 549 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 608
Query: 1282 QIVNFYSAT--KTLPYILEGLRSKNNRT--RIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337
+ VN T + + + + + I +DL+ L + G I + I+
Sbjct: 609 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 668
Query: 1338 SL---TAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1385
+ ++ E+R+++ L K + + + + L+ F
Sbjct: 669 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2013 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.96 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.93 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.89 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.83 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.81 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.71 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.7 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.67 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.19 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.15 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.99 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.91 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.43 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.17 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.08 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.03 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.97 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.82 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.76 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.73 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.65 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 97.36 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.24 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 97.17 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.03 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 96.98 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 96.35 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 95.72 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 93.94 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 92.24 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 91.67 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 91.49 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 89.8 | |
| d1elka_ | 153 | Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | 88.32 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 87.5 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 86.02 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 83.47 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 80.94 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.1e-24 Score=305.71 Aligned_cols=991 Identities=15% Similarity=0.131 Sum_probs=585.5
Q ss_pred hhhhccCCChHHHHHHHHHHHHHhhccCC-CCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHH
Q 000159 16 WEDRLLHKNWKVRNEANIDLAALCDSITD-PKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEV 94 (2013)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d-~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v 94 (2013)
|-|++.|.|+..|.+|.++|.+.++...- -++....++.+.+-+.+.|+|+.||..|+.||..++..... .....+
T Consensus 8 ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~---~~~~~l 84 (1207)
T d1u6gc_ 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVETI 84 (1207)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHHH
T ss_pred HHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH---hhHHHH
Confidence 56899999999999999999999864321 12234666777888899999999999999999999887654 245678
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHh-hhh-------hhhHHH----HHHHHh-hcCChhhHHHHHHHHHHHHHHhCC
Q 000159 95 CDAIAAKCLTGRPKTVEKAQAVFMLWVE-LEA-------VDVFLD----VMEKAI-KNKVAKAVVPAIDVMFQALSEFGA 161 (2013)
Q Consensus 95 ~~~LveK~l~~k~~~k~~A~~~ll~~~E-~~~-------~~~v~~----~L~~~~-~~KnpKv~~~~l~~L~~~l~~fG~ 161 (2013)
+..|+...++.+..+|+.+.-++-.+++ +.. ...++. .+.... ..+++.++.+++.+|.+++..||.
T Consensus 85 ~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~ 164 (1207)
T d1u6gc_ 85 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 164 (1207)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH
Confidence 8888888777788888887655544443 211 122333 333332 467889999999999999999998
Q ss_pred CCcC-hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhh
Q 000159 162 KIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240 (2013)
Q Consensus 162 ~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~ 240 (2013)
...+ ...+++.+...+.|++..||..|..++..+..++++..+... +..+-+.+.+
T Consensus 165 ~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~---------~~~ll~~l~~-------------- 221 (1207)
T d1u6gc_ 165 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL---------IEHLLSELSK-------------- 221 (1207)
T ss_dssp SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTH---------HHHHHHHHHH--------------
T ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH---------HHHHHHHHcc--------------
Confidence 6554 356999999999999999999999999999888876432111 1111111110
Q ss_pred hhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCCC
Q 000159 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIA 319 (2013)
Q Consensus 241 ~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~ 319 (2013)
+.+|..|+.++..+..++. .+...
T Consensus 222 -------------------------------------------------------~~~~~~~~~~~~~l~~l~~~~~~~~ 246 (1207)
T d1u6gc_ 222 -------------------------------------------------------NDSMSTTRTYIQCIAAISRQAGHRI 246 (1207)
T ss_dssp -------------------------------------------------------TCSSCSCTTHHHHHHHHHHHSSGGG
T ss_pred -------------------------------------------------------CCCHHHHHHHHHHHHHHHHHcchhh
Confidence 0111112234444555542 23222
Q ss_pred CCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC
Q 000159 320 PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (2013)
Q Consensus 320 ~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~ 399 (2013)
...+.++++.+.+.+.+.+..++..++.+++.++......+.+|...+++.+++.++.......................
T Consensus 247 ~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~ 326 (1207)
T d1u6gc_ 247 GEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD 326 (1207)
T ss_dssp TTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------------
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccc
Confidence 33356788888889987777899999999999999999999999999999999887654333333322222222211112
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 400 ~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
......+.......+.+|.+|..++..|..++...+. .+..++..++|.+.+.+.|.+++||.++..++..+....+..
T Consensus 327 ~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~-~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~ 405 (1207)
T d1u6gc_ 327 DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE-MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPV 405 (1207)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHTTCCT-THHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccch
Confidence 2233444455556789999999999999988876553 455677899999999999999999999999998876655432
Q ss_pred hHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q 000159 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (2013)
Q Consensus 480 ~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~ 559 (2013)
.... . + +. ..
T Consensus 406 ~~~~-~---~------------------------------------~~---------------~~--------------- 415 (1207)
T d1u6gc_ 406 QSWL-C---D------------------------------------PD---------------AM--------------- 415 (1207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhh-h---c------------------------------------hH---------------HH---------------
Confidence 1000 0 0 00 00
Q ss_pred CCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH-HHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhcc-Ccch
Q 000159 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQ 637 (2013)
Q Consensus 560 ~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~-ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-~~~~ 637 (2013)
....++ ..+.... ..+-..+...+.+.+++.|..++..+.+++...+ ....
T Consensus 416 --------------------------~~~~~~~~~l~~~~-~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~ 468 (1207)
T d1u6gc_ 416 --------------------------EQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ 468 (1207)
T ss_dssp ----------------------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG
T ss_pred --------------------------HhhcchHHHHHHHh-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHH
Confidence 000011 1111111 1122456778899999999999999988877633 3333
Q ss_pred HHHHHHHHHhcCCCCcc--cHHHHHHHHHHHHHHHHHHcC-CCchhhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhh
Q 000159 638 SVEILVRLVCMLPGWSE--KNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEA 712 (2013)
Q Consensus 638 ~~~~lv~~L~~~pgl~D--sN~qV~~~~Le~l~~l~~~~~-~~~~~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~ 712 (2013)
+...++..+.. .+.| ....+...++.++..++..+. .........+++.++..+.|. +++..+..++..+...
T Consensus 469 ~l~~~~~~i~~--~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~ 546 (1207)
T d1u6gc_ 469 HIPVLVPGIIF--SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKV 546 (1207)
T ss_dssp GHHHHHHHHHH--HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHH--HHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHH
Confidence 33434333321 1223 334566677888877776543 222334566777777777774 6677777777777765
Q ss_pred hCh-------------hHHHHHHHHHhh-hCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCCCcHhHHH
Q 000159 713 VGP-------------GFIFERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRN 777 (2013)
Q Consensus 713 ~~~-------------~~Vl~~L~~~l~-~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~ 777 (2013)
..+ ..++..++..+. .+.+..++..++..+..++..+|.... .+..+++.+... +.+ ...|.
T Consensus 547 l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~-l~~--~~~r~ 623 (1207)
T d1u6gc_ 547 IRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLER-LKN--EITRL 623 (1207)
T ss_dssp HCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHH-TTS--SSHHH
T ss_pred hhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hcc--hhhHH
Confidence 432 123333344332 356778888888888888887764321 234555555443 443 34566
Q ss_pred HHHHHHHHHHHhhCh-hHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccch
Q 000159 778 ATIKLLGALHKFVGP-DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTP 856 (2013)
Q Consensus 778 aA~~ll~~Ly~~~G~-~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~ 856 (2013)
.+...+..+...... .+. .+...+.+
T Consensus 624 ~a~~~l~~i~~~~~~~~~~-----------------------------------------------------~~l~~~~~ 650 (1207)
T d1u6gc_ 624 TTVKALTLIAGSPLKIDLR-----------------------------------------------------PVLGEGVP 650 (1207)
T ss_dssp HHHHHHHHHTTCSSCCCCH-----------------------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHH-----------------------------------------------------HHHHHHHH
Confidence 666665544211110 000 01112334
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
.+...+.+.+|..|..+++.+..++......+.+..+..++..|...+.|.+..++..++.+++.++...+.....+...
T Consensus 651 ~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~ 730 (1207)
T d1u6gc_ 651 ILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGS 730 (1207)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTT
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccHHHHHHHHHHHHHHHhhcchhhhhHHHH
Confidence 56667788899999999999999998644444444345666777778899999999999999999998888778888888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc---Cc-hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhh
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAV---HL-DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~---gl-~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ 1012 (2013)
+++.++..+.+.. +...+..++..++..+ +. ....+.+...|.+. +...
T Consensus 731 il~~l~~~~~s~l--~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~-----------------~~~~-------- 783 (1207)
T d1u6gc_ 731 ILNELIGLVRSPL--LQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGP-----------------VYSQ-------- 783 (1207)
T ss_dssp THHHHHHHHTCTT--CCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTT-----------------TTTC--------
T ss_pred HHHHHHHHhcCch--hhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHh-----------------hccc--------
Confidence 9998888876542 1222222222222111 11 11111122222110 0000
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCC
Q 000159 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSAS 1092 (2013)
Q Consensus 1013 ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~ 1092 (2013)
...............++..+....+.... ..+..+- .....
T Consensus 784 -------~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-~~l~~~l-----------~~~~~-------------------- 824 (1207)
T d1u6gc_ 784 -------STALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFI-----------QDVKN-------------------- 824 (1207)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTT-----------TTTTT--------------------
T ss_pred -------cchhhHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHH-----------HHHhc--------------------
Confidence 00111222334445566666666654321 1111110 00000
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhh
Q 000159 1093 NGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR 1172 (2013)
Q Consensus 1093 ~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~ 1172 (2013)
. ... .....-.+..+ +.- .. .+......++.
T Consensus 825 ----------~-------~~~----------~~~~~~al~~L---ge~------~~--~~~~~~~~~l~----------- 855 (1207)
T d1u6gc_ 825 ----------S-------RST----------DSIRLLALLSL---GEV------GH--HIDLSGQLELK----------- 855 (1207)
T ss_dssp ----------T-------TCC----------HHHHHHHHHHH---HHH------HH--HSCCCSCTHHH-----------
T ss_pred ----------c-------cch----------HHHHHHHHHHH---HHH------HH--hccccchHHHH-----------
Confidence 0 000 00000000000 000 00 00000001111
Q ss_pred HHHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHH
Q 000159 1173 EDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252 (2013)
Q Consensus 1173 ~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~ 1252 (2013)
..++..+.+.+..-|..|...|......+ .+..+..+.-.+ ++.+..-...+..+..++ ...+......
T Consensus 856 ~~l~~~l~~~~~~vr~aAa~aLg~l~~~~-------~~~~lp~il~~l-~~~~~~~~~ll~al~ei~---~~~~~~~~~~ 924 (1207)
T d1u6gc_ 856 SVILEAFSSPSEEVKSAASYALGSISVGN-------LPEYLPFVLQEI-TSQPKRQYLLLHSLKEII---SSASVVGLKP 924 (1207)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHT-------HHHHHHHHHHHH-HSCGGGHHHHHHHHHHHH---HSSCSTTTHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhh-------HHHHhHHHHHHH-hcCchHHHHHHHHHHHHH---HhcchhhhHH
Confidence 12444555666666777766665443222 232222221112 222222222333444333 3333333445
Q ss_pred HHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccch
Q 000159 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKS 1332 (2013)
Q Consensus 1253 Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~v~p~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~ 1332 (2013)
.+..+++.|+..+.+..+.+|+.+-+.+..++.++| ..++|.|.+.++++|+.+|..++..+.+++...|.......+.
T Consensus 925 ~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~-~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~ 1003 (1207)
T d1u6gc_ 925 YVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN 1003 (1207)
T ss_dssp HHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 577788888888888899999999999999988776 5789999999999999999999999998887666432112333
Q ss_pred H-HHHHHhhcCCChHHHHHHHHHHHHHHHHhChHHHHHh
Q 000159 1333 L-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYV 1370 (2013)
Q Consensus 1333 l-~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~v 1370 (2013)
+ +.+-..++|.|..||.+|+.+|..+...-+.-|..++
T Consensus 1004 li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l 1042 (1207)
T d1u6gc_ 1004 CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLL 1042 (1207)
T ss_dssp HSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 3 5555788999999999999999988665544445444
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.6e-22 Score=282.55 Aligned_cols=917 Identities=14% Similarity=0.137 Sum_probs=566.0
Q ss_pred hhhccCCChHHHHHHHHHHHHHhhccCCCC--c---h-HHHhhhhhhHh-hhcCCcHHHHHHHHHHHHHHHHHhchhhhh
Q 000159 17 EDRLLHKNWKVRNEANIDLAALCDSITDPK--D---N-RIRELGPLFKK-TVADSNAPVQDKALDALIAYLKAADADAGR 89 (2013)
Q Consensus 17 ~erl~~k~WK~R~~ayeeL~~~~~~~~d~~--~---~-~~~~~~~~~~k-~v~DsN~~vqe~~leal~~~v~~~~~~~~~ 89 (2013)
...+.+++++.|-.+...|...+...+... . . ....+.+.+.. .....+..++..+++++..++.+.+.....
T Consensus 89 ~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~ 168 (1207)
T d1u6gc_ 89 CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN 168 (1207)
T ss_dssp HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT
T ss_pred HHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHH
Confidence 345567777777766665555554332211 0 0 11222333333 355678899999999999999998765666
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh---hhhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCCCcC
Q 000159 90 YAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA---VDVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (2013)
Q Consensus 90 ~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~---~~~v~~~L~~~~-~~KnpKv~~~~l~~L~~~l~~fG~~~i~ 165 (2013)
+...+++.++...-..++.+|..|..++-.++..-. ...++..++..+ .+.++.++..++.++..+.+..|....+
T Consensus 169 ~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 248 (1207)
T d1u6gc_ 169 FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 248 (1207)
T ss_dssp THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHH
Confidence 677888888776444789999999999888776522 245666666655 4667777888888888888877764333
Q ss_pred -hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhc-CCCCCCCccchhhhhH
Q 000159 166 -PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDK 243 (2013)
Q Consensus 166 -~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~-~~~~~P~R~~rs~~~~ 243 (2013)
+..+++.+...+.+.+..||+.+...+..+....+.. +.+++ . ++...+-+. .. .|. ....
T Consensus 249 ~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~-~--------~ii~~~l~~l~~--dp~-----~~~~ 311 (1207)
T d1u6gc_ 249 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VYPHV-S--------TIINICLKYLTY--DPN-----YNYD 311 (1207)
T ss_dssp SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHHHH-H--------HHHHHHTTCCCC--C-----------
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhh-hhhhH-H--------HHHHHHHHHHhc--Ccc-----hhhh
Confidence 4678999999999999999999999999988888764 43433 1 111111111 10 010 0000
Q ss_pred hhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCCCC
Q 000159 244 ELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGD 322 (2013)
Q Consensus 244 ~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~~~ 322 (2013)
.. .+.......+.+ +..+ ... +..+....+..|+.|+.+++.|..++. .+......
T Consensus 312 -~~-------------~~~~~~~~~~~~--~~~~------~~~-~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~ 368 (1207)
T d1u6gc_ 312 -DE-------------DEDENAMDADGG--DDDD------QGS-DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 368 (1207)
T ss_dssp -----------------------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred -hH-------------HHHHhhhhhhcc--chhh------hhH-HHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 00 000000000000 0000 011 345666788999999999999999874 45544455
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc-------------------chhhhHhHHHHHHHHhccCcHHHH
Q 000159 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH-------------------FSGSSRFLLPVLLEKLKEKKPTVA 383 (2013)
Q Consensus 323 ~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~-------------------f~~~~~~llp~LL~klkdkk~~V~ 383 (2013)
|..+++.|...+.|.+..|+..++.++..+....+.. +..+...+++.+.+.++++...++
T Consensus 369 ~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r 448 (1207)
T d1u6gc_ 369 YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTR 448 (1207)
T ss_dssp HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHH
Confidence 6778899999999999999999999999998765421 345667788999999999999999
Q ss_pred HHHHHHHHHHHHhcC----CChHhHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCC
Q 000159 384 ESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (2013)
Q Consensus 384 ~aa~~aL~ai~~~~~----~~l~~il~~l~~~l~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds 457 (2013)
.++..++..++.... ..+..+++.+...+.+++ ..+|..++.++..++..+....+.+++..+.+.+..++.|.
T Consensus 449 ~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 528 (1207)
T d1u6gc_ 449 QCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP 528 (1207)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccc
Confidence 999999999887621 123556677777777544 57899999999999998888778888899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCch------hHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcc
Q 000159 458 TPEVRDAAFSVLAAIAKSVGMR------PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASES 531 (2013)
Q Consensus 458 ~~~VR~aA~~al~~l~~~~Ge~------~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 531 (2013)
.+.+|..|..+++.+.+.++.. .+.+++..+-+....++ .... ....... + +-. .-+
T Consensus 529 ~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l----~~~~-------~~~e~~~-~----al~-~l~ 591 (1207)
T d1u6gc_ 529 FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRL----KAAD-------IDQEVKE-R----AIS-CMG 591 (1207)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHH----SCSS-------SCHHHHH-H----HHH-HHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHH----Hhcc-------cchHHHH-H----HHH-HHH
Confidence 9999999999999999987642 23344443332222111 1100 0000000 0 000 000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCc----CCCCCCCCCCCCCCHHHHHHHhhccCcHHHH
Q 000159 532 SFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK----LTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607 (2013)
Q Consensus 532 ~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~----~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~ 607 (2013)
...... +..-.+. .+ ..-+.-...-.....+..+.. .... .....+. .-+.. +.+.+.
T Consensus 592 ~l~~~~-----~~~~~~~-~~---~~l~~l~~~l~~~~~r~~a~~~l~~i~~~---~~~~~~~-~~l~~-----~~~~l~ 653 (1207)
T d1u6gc_ 592 QIICNL-----GDNLGSD-LP---NTLQIFLERLKNEITRLTTVKALTLIAGS---PLKIDLR-PVLGE-----GVPILA 653 (1207)
T ss_dssp HHHHHT-----GGGCCTH-HH---HHHHHHHHHTTSSSHHHHHHHHHHHHTTC---SSCCCCH-HHHHH-----HHHHHH
T ss_pred HHHHHh-----hhhhHHH-HH---HHHHHHHHHhcchhhHHHHHHHHHHHHHh---ccchhHH-HHHHH-----HHHHHH
Confidence 000000 0000000 00 000000000000000000000 0000 0000000 11111 124567
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhccC-cch-HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHH
Q 000159 608 GQLKSAVWKERLEAISSLRQQVEAVQN-LDQ-SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLC 685 (2013)
Q Consensus 608 ~~L~s~~Wk~Rl~ale~L~~~v~~~~~-~~~-~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~i 685 (2013)
..+.+.+|..|..++..|..++..... ... ..+.++..+. +.+.|++.++.+.+++++..++...+.........+
T Consensus 654 ~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~--~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~i 731 (1207)
T d1u6gc_ 654 SFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELP--PLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSI 731 (1207)
T ss_dssp HHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCG--GGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTT
T ss_pred HhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhc--cccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHH
Confidence 888999999999999999999888443 221 2233433332 357889999999999999888765543322233334
Q ss_pred HHHHHhhhcChhhhHHHHHHHHHHH------------------------------------------------hhhChh-
Q 000159 686 LLGISERVADIKTRAHAMKCLTTFS------------------------------------------------EAVGPG- 716 (2013)
Q Consensus 686 l~~LveKlgD~K~r~~a~e~L~~l~------------------------------------------------e~~~~~- 716 (2013)
++.++..+.++.....+..++..+. ...+..
T Consensus 732 l~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 811 (1207)
T d1u6gc_ 732 LNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG 811 (1207)
T ss_dssp HHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 4444444433322222222222111 111100
Q ss_pred -HHHHHHHHHhh-hCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhH
Q 000159 717 -FIFERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794 (2013)
Q Consensus 717 -~Vl~~L~~~l~-~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l 794 (2013)
.++..++.... ...++.++..++..+.++....+... ...+.+.+... +.+.+..||.+|..++|.+.....+.+
T Consensus 812 ~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~--~~~l~~~l~~~-l~~~~~~vr~aAa~aLg~l~~~~~~~~ 888 (1207)
T d1u6gc_ 812 PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG--QLELKSVILEA-FSSPSEEVKSAASYALGSISVGNLPEY 888 (1207)
T ss_dssp HHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCS--CTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccc--hHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 01111111111 12456778888888888877777643 23566777777 999999999999999998875543332
Q ss_pred HhhhhhccHHHHHHHHH--------------HHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHH
Q 000159 795 KGFLADVKPALLSALDA--------------EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (2013)
Q Consensus 795 ~~~L~~lkp~ll~~Le~--------------ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~ 860 (2013)
. |.+++.++. -+.... .+.+ ......+.+.++.
T Consensus 889 l-------p~il~~l~~~~~~~~~ll~al~ei~~~~~------------------------~~~~--~~~~~~i~~~L~~ 935 (1207)
T d1u6gc_ 889 L-------PFVLQEITSQPKRQYLLLHSLKEIISSAS------------------------VVGL--KPYVENIWALLLK 935 (1207)
T ss_dssp H-------HHHHHHHHSCGGGHHHHHHHHHHHHHSSC------------------------STTT--HHHHHHHHHHHTT
T ss_pred h-------HHHHHHHhcCchHHHHHHHHHHHHHHhcc------------------------hhhh--HHHHHHHHHHHHH
Confidence 2 333333321 111100 0000 0112234455667
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHH
Q 000159 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2013)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (2013)
.+.+.+|.+|..+.+.+..++.. . ...+++.|..++.|.+..++..++.++..+...++..+.+|++.+++.
T Consensus 936 ~~~~~~~~vr~~~a~~lg~L~~~-----~---~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ 1007 (1207)
T d1u6gc_ 936 HCECAEEGTRNVVAECLGKLTLI-----D---PETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGD 1007 (1207)
T ss_dssp CCCCSSTTHHHHHHHHHHHHHHS-----S---GGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTT
T ss_pred HhCCCcHHHHHHHHHHHHHHHhc-----C---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 78888999999999999888742 1 256889999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcC-C-------------------CChhhHHHHHHHHH
Q 000159 941 ILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDA-K-------------------LGAEGRKDLFDWLS 998 (2013)
Q Consensus 941 ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~-k-------------------~~p~~R~~~l~~L~ 998 (2013)
++..|+|++..||.+|..||++++++-+ +.+.++.+.+.|-+. + ..-++|..+.+.+.
T Consensus 1008 ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~ 1087 (1207)
T d1u6gc_ 1008 FLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMY 1087 (1207)
T ss_dssp THHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHH
Confidence 9999999999999999999999998765 234445555544211 0 02468999999998
Q ss_pred HHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCC
Q 000159 999 KQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (2013)
Q Consensus 999 ~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~ 1056 (2013)
..+......-++.+++..+...|.| +.|||--+...+..+....+.+ +.+.+..|-
T Consensus 1088 ~~l~~~~~~~~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~-~~~~l~~~~ 1143 (1207)
T d1u6gc_ 1088 TLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSA-VLQRLDRLV 1143 (1207)
T ss_dssp HHHHSSCSSSCHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHH-HHTTTTTTH
T ss_pred HHHHHhhhhcCHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHhCcHH-HHHHHHHHH
Confidence 8887655555677888889999999 4699999999999988877653 445555543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.4e-21 Score=250.34 Aligned_cols=554 Identities=18% Similarity=0.175 Sum_probs=366.4
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
+-|.+.+.+.+...|..|+..|..++..-.. ...-.++++.|...+.|.. .|...+++.++.++.-++. ..++..+
T Consensus 13 ~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~-~~~~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~~~~~~--~~~~~~l 88 (588)
T d1b3ua_ 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGV-ERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLVGG--PEYVHCL 88 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHHSCH-HHHHHTHHHHHHHTCCCCH-HHHHHHHHHHTTCSGGGTS--GGGGGGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc-HhhHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHcCC--hhHHHHH
Confidence 4577889999999999999999887642100 0113568888888888654 3555555555554443322 2468889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH----HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000159 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV----VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (2013)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~i----l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (2013)
+|.+...+.+..+.||+++..++..+... .+...+ +|.+..-.++.....|..++..+..++....... .
T Consensus 89 l~~l~~l~~~~~~~Vr~~a~~~l~~i~~~--~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~----~ 162 (588)
T d1b3ua_ 89 LPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV----K 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----H
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH----H
Confidence 99999999999999999999999999875 444433 3433334456667888888888888776655432 3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000159 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (2013)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~ 523 (2013)
..+.+.+.+++.|.++.||.+|..+++.+.+.++.+...+. +-
T Consensus 163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~---l~---------------------------------- 205 (588)
T d1b3ua_ 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE---II---------------------------------- 205 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHT---HH----------------------------------
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHH---HH----------------------------------
Confidence 66788999999999999999999999999887775422211 11
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000159 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (2013)
Q Consensus 524 ~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~ 603 (2013)
T Consensus 206 -------------------------------------------------------------------------------- 205 (588)
T d1b3ua_ 206 -------------------------------------------------------------------------------- 205 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (2013)
+-+...+.+.+|..|..|++.+..+....+... ....++..+.. .+.|.+..|+..+.+.+..++...+. .....
T Consensus 206 ~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~-~~~~i~~~l~~--~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~ 280 (588)
T d1b3ua_ 206 PMFSNLASDEQDSVRLLAVEACVNIAQLLPQED-LEALVMPTLRQ--AAEDKSWRVRYMVADKFTELQKAVGP--EITKT 280 (588)
T ss_dssp HHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH-HHHHTHHHHHH--HHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH-HHHHHHHHHHH--hcccccHHHHHHHHHhHHHHHHHhhh--hhhhh
Confidence 111222333444444444444444433221110 01111111111 12344444544444444444432211 00112
Q ss_pred HHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhChh--------HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC
Q 000159 684 LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 753 (2013)
Q Consensus 684 ~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~--------~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~ 753 (2013)
.+++.+..-+.| ..+|..+...|..+++..+.. .+++.+... ..+.++++|..+..++..+...+|...
T Consensus 281 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~ 359 (588)
T d1b3ua_ 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN 359 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH
T ss_pred hhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh-hcCCChHHHHHHHHHHhhhhhccchhH
Confidence 234444443443 245666666666666554322 233333333 367889999888888877777666421
Q ss_pred CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccc
Q 000159 754 LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES 833 (2013)
Q Consensus 754 l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~ 833 (2013)
....+++.+... +.+.++.||..+...++.+...+|..-.
T Consensus 360 -~~~~l~p~l~~~-l~d~~~~v~~~~~~~l~~~~~~~~~~~~-------------------------------------- 399 (588)
T d1b3ua_ 360 -TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQL-------------------------------------- 399 (588)
T ss_dssp -HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHHH--------------------------------------
T ss_pred -HHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHhhcchhhh--------------------------------------
Confidence 234566777676 8888999999988888777665553200
Q ss_pred cCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHH
Q 000159 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (2013)
Q Consensus 834 ~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~ 913 (2013)
...+.+.+...+.|.+|++|..+++.+..++...+... ....+...+...+.|.+..|+.
T Consensus 400 -----------------~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~D~~~~VR~ 459 (588)
T d1b3ua_ 400 -----------------SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp -----------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHH
T ss_pred -----------------hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh---HHHHHHHHHHhhccCCchhHHH
Confidence 01123455666788999999999999999886422211 1255777788889999999999
Q ss_pred HHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhh
Q 000159 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEG 989 (2013)
Q Consensus 914 ~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----~~ll~~l~~~L~~~k~~p~~ 989 (2013)
.|+.+++.|+..+|+.+. ...++|.+...+.|++..+|.++..++..+...++. ..++|.+...+.|+ .|.+
T Consensus 460 ~A~~~L~~l~~~~~~~~~--~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~--v~nV 535 (588)
T d1b3ua_ 460 AATSNLKKLVEKFGKEWA--HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANV 535 (588)
T ss_dssp HHHHHHHHHHHHHCHHHH--HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHH
T ss_pred HHHHHHHHHHHHhCcHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCC--CHHH
Confidence 999999999999998753 457889999999999999999999999999988764 45677777777776 5899
Q ss_pred HHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHH
Q 000159 990 RKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 990 R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
|..++..|.......+. ..+...+.| +...++|.+.|||..|.+++..+
T Consensus 536 R~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 536 RFNVAKSLQKIGPILDN-STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCc-HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999876655533 234556667 44566999999999999999765
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=3.2e-18 Score=223.00 Aligned_cols=531 Identities=15% Similarity=0.138 Sum_probs=354.9
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHH
Q 000159 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE 406 (2013)
Q Consensus 327 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~ 406 (2013)
+..|.+.+.+.|..++..|++.++.+|..+|.. .-...++|.|.+.+.|+.. |+.++.+.|..+... .
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~--~~~~~lip~l~~~~~~~~e-v~~~~~~~l~~~~~~--~------- 79 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTTL--V------- 79 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH--HHHHTHHHHHHHTCCCCHH-HHHHHHHHHTTCSGG--G-------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcH--hhHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHHH--c-------
Confidence 556778889999999999999999999999863 4456789999888877653 443333333322211 0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHh
Q 000159 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (2013)
Q Consensus 407 ~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~ 486 (2013)
..+.. ...++|.+..++.|.++.||++|.+++..+....+...+..++.
T Consensus 80 ---------------------------~~~~~----~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~ 128 (588)
T d1b3ua_ 80 ---------------------------GGPEY----VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 128 (588)
T ss_dssp ---------------------------TSGGG----GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHH
T ss_pred ---------------------------CChhH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 00111 13445556666666677777777777777776666544444332
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 487 KLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKK 566 (2013)
Q Consensus 487 ~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~ 566 (2013)
.+ +....+.. .. ..+.++....+..
T Consensus 129 p~-------i~~L~~~~---------~~------------------~~r~~a~~ll~~~--------------------- 153 (588)
T d1b3ua_ 129 PL-------VKRLAGGD---------WF------------------TSRTSACGLFSVC--------------------- 153 (588)
T ss_dssp HH-------HHHHHTCS---------SH------------------HHHHHHGGGHHHH---------------------
T ss_pred HH-------HHHHhccc---------ch------------------HHHHHHHHHHHHH---------------------
Confidence 11 11111100 00 0000000000000
Q ss_pred CCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 000159 567 DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV 646 (2013)
Q Consensus 567 ~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L 646 (2013)
. ...+.+... . +.+.+.+.+.|.++..|..+...+..+.+..+... ....++..|
T Consensus 154 --~-----------------~~~~~~~~~-~----l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~-~~~~l~~~l 208 (588)
T d1b3ua_ 154 --Y-----------------PRVSSAVKA-E----LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN-VKSEIIPMF 208 (588)
T ss_dssp --T-----------------TTSCHHHHH-H----HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH-HHHTHHHHH
T ss_pred --H-----------------HHhhHHHHH-H----HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHH-HHHHHHHHH
Confidence 0 000111111 1 12445667889999999999999998887643211 112233333
Q ss_pred hcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhChhHHHHHHHH
Q 000159 647 CMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYK 724 (2013)
Q Consensus 647 ~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~~~~Vl~~L~~ 724 (2013)
.. ..+|.+..|...+++++..++...+. ......++|.+..-+.|. ++|..+.++|..+++..+++.....+.+
T Consensus 209 ~~--l~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~ 284 (588)
T d1b3ua_ 209 SN--LASDEQDSVRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVP 284 (588)
T ss_dssp HH--HHTCSCHHHHTTHHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHH
T ss_pred HH--HhcCCchhhHHHHHHHHHHhhccCCH--HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhH
Confidence 21 14688899999999999988876532 223455677777667774 5899999999999998887655444333
Q ss_pred ---HhhhCCChhHHHHHHHHHHHHHHHhCCCCC---ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh
Q 000159 725 ---IMKDHKNPKVLSEGILWMVSAVEDFGVSHL---KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2013)
Q Consensus 725 ---~l~~~KnpKv~~~~l~~L~~li~~fG~~~l---~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2013)
.+..+.++.+|..++..+..++..++.... ....+++.+... +.+.++.||.++..++..+...+|... ++
T Consensus 285 ~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~--~~ 361 (588)
T d1b3ua_ 285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN--TI 361 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH--HH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh-hcCCChHHHHHHHHHHhhhhhccchhH--HH
Confidence 224688999999999999999987775432 135678888887 899999999999888877776666421 11
Q ss_pred hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHH
Q 000159 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878 (2013)
Q Consensus 799 ~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~ 878 (2013)
+. +.+.+...+.|.++.+|..++..+.
T Consensus 362 ~~-----------------------------------------------------l~p~l~~~l~d~~~~v~~~~~~~l~ 388 (588)
T d1b3ua_ 362 EH-----------------------------------------------------LLPLFLAQLKDECPEVRLNIISNLD 388 (588)
T ss_dssp HH-----------------------------------------------------THHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred HH-----------------------------------------------------HHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 11 2345566677888888988888887
Q ss_pred HHHHhccccCCCC-ChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHH
Q 000159 879 KILEEANKRIQPA-GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957 (2013)
Q Consensus 879 ~il~~a~~~I~~~-~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~ 957 (2013)
.+... +... ....+++.|...++|.|+.++..++.+++.++..+|..+ +...+.+.++..+.|....||.+|.
T Consensus 389 ~~~~~----~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~D~~~~VR~~A~ 462 (588)
T d1b3ua_ 389 CVNEV----IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAAT 462 (588)
T ss_dssp HHHHH----SCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HHHhh----cchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh--HHHHHHHHHHhhccCCchhHHHHHH
Confidence 77652 1111 125577888888899999999999999999999998775 3457888899999999999999999
Q ss_pred HHHHHHHHhcCch----hhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHH
Q 000159 958 TVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAE 1033 (2013)
Q Consensus 958 ~aL~~i~~~~gl~----~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~ 1033 (2013)
.+|..++..+|.+ .++|.+...+.++ +...|..++..+.......+.......+++.+..++.|+.++||.++.
T Consensus 463 ~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~ 540 (588)
T d1b3ua_ 463 SNLKKLVEKFGKEWAHATIIPKVLAMSGDP--NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVA 540 (588)
T ss_dssp HHHHHHHHHHCHHHHHHHTHHHHHHTTTCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999854 3566666666666 478898888877765543322111245666699999999999999999
Q ss_pred HHHHHHHHHcChhHH
Q 000159 1034 ACIVEILRAGGQETI 1048 (2013)
Q Consensus 1034 ~~L~~l~~~~G~~~~ 1048 (2013)
++|..+...++...+
T Consensus 541 ~~l~~i~~~~~~~~~ 555 (588)
T d1b3ua_ 541 KSLQKIGPILDNSTL 555 (588)
T ss_dssp HHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHcCcHhH
Confidence 999999888887543
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=6.1e-19 Score=241.74 Aligned_cols=495 Identities=13% Similarity=0.152 Sum_probs=332.6
Q ss_pred HHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHH
Q 000159 382 VAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (2013)
Q Consensus 382 V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 460 (2013)
+|.++..+|+.+... +..-++.+++.+...+++.+|..|..++..|+.+.+.+. ..+.++++.++|.+...+.|.++.
T Consensus 373 ~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~-~~~~~~l~~li~~l~~~l~d~~~~ 451 (888)
T d1qbkb_ 373 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCLSDKKAL 451 (888)
T ss_dssp SHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSH-HHHTTTHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHH-HHhcccchhhhHHHHHhccCCCHH
Confidence 677888888877654 112245677777788889999999999988887665543 345677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccccc
Q 000159 461 VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540 (2013)
Q Consensus 461 VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s 540 (2013)
||.+|..+++.+...+.......++..
T Consensus 452 Vr~~a~~~l~~~~~~~~~~~~~~~~~~----------------------------------------------------- 478 (888)
T d1qbkb_ 452 VRSITCWTLSRYAHWVVSQPPDTYLKP----------------------------------------------------- 478 (888)
T ss_dssp HHHHHHHHHHHTHHHHHSSCHHHHTTT-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhh-----------------------------------------------------
Confidence 999999999877654432211111100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHH
Q 000159 541 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLE 620 (2013)
Q Consensus 541 ~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ 620 (2013)
+-+.++..+.+.+++.|..
T Consensus 479 -------------------------------------------------------------~l~~ll~~l~d~~~~V~~~ 497 (888)
T d1qbkb_ 479 -------------------------------------------------------------LMTELLKRILDSNKRVQEA 497 (888)
T ss_dssp -------------------------------------------------------------HHHHHHHHHSSSCHHHHHH
T ss_pred -------------------------------------------------------------hHHHHHHHhcCCCHHHHHH
Confidence 0134566777888888888
Q ss_pred HHHHHHHHHHhc-cCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC-C-chhhHHHHHHHHHhhhcC--
Q 000159 621 AISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-F-PKKCVVLCLLGISERVAD-- 695 (2013)
Q Consensus 621 ale~L~~~v~~~-~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~-~-~~~~~~~il~~LveKlgD-- 695 (2013)
|+..|..+++.. ....++.+.++..|... +.+....+....++++..++...+. + .......+++.++++...
T Consensus 498 a~~al~~l~~~~~~~l~p~~~~il~~l~~~--l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 575 (888)
T d1qbkb_ 498 ACSAFATLEEEACTELVPYLAYILDTLVFA--FSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK 575 (888)
T ss_dssp HHHHHHHHHHHHTTSSGGGHHHHHHHHHHH--TTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcc
Confidence 888888888763 33445555555554321 3333334445566677766665432 2 233556677777765432
Q ss_pred --hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcH
Q 000159 696 --IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773 (2013)
Q Consensus 696 --~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~ 773 (2013)
.+......+++..++...+..+. +.. +.+...++..+...+.. .+............+.
T Consensus 576 ~~~~~~~~~le~l~~i~~~~~~~~~-~~~---------~~~~~~~~~~l~~~l~~---------~~~~~~~~~~~~~~~~ 636 (888)
T d1qbkb_ 576 DEDKDLFPLLECLSSVATALQSGFL-PYC---------EPVYQRCVNLVQKTLAQ---------AMLNNAQPDQYEAPDK 636 (888)
T ss_dssp TTCTTHHHHHHHHHHHHHHSTTTTH-HHH---------HHHHHHHHHHHHHHHHH---------HHHHHHCTTTSCCCCT
T ss_pred cchHHHHHHHHHHHHHHHHhHHHHh-hhH---------HHHHHHHHHHHHHHHHH---------HHHHhcccccccchhH
Confidence 23444566677766665543211 100 00111122222222211 1111111111344566
Q ss_pred hHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccc
Q 000159 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGK 853 (2013)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~ 853 (2013)
.+...+..++..+...+|..+..++.. ..
T Consensus 637 ~~~~~~l~~l~~l~~~l~~~~~~~~~~---------------------------------------------------~~ 665 (888)
T d1qbkb_ 637 DFMIVALDLLSGLAEGLGGNIEQLVAR---------------------------------------------------SN 665 (888)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHT---------------------------------------------------SC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhH---------------------------------------------------hh
Confidence 677777777777777666554433211 01
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
+.+-++..+.|.++.+|..|+..+..+.......+.+.. .+++..|...|.+.+..|+..|+.++|.|+..+|..|.+|
T Consensus 666 l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py 744 (888)
T d1qbkb_ 666 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPY 744 (888)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGG
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334566778899999999999999999886666777764 8899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCC
Q 000159 934 SKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (2013)
Q Consensus 934 ~~~llp~ll~~L~D~k--~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~ 1005 (2013)
+..+++.++..+++.+ ..|++.+..||+.++..++ ++.+++.+...|.... +...|..++..+...+...+
T Consensus 745 ~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~-d~~ek~~~~~g~~~~i~~~p 823 (888)
T d1qbkb_ 745 IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTMISVNP 823 (888)
T ss_dssp SHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSC-CSHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHHHHHCc
Confidence 9999999999998644 5688889999999887664 5677777888886543 24557778888877776443
Q ss_pred CC--CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHH
Q 000159 1006 GF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILER 1066 (2013)
Q Consensus 1006 ~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~ 1066 (2013)
.. +.+..++. .+....+..++++......|..+...+|.+.....+.+|+|..+..+...
T Consensus 824 ~~~~~~l~~~~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~ 885 (888)
T d1qbkb_ 824 SGVIQDFIFFCD-AVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 885 (888)
T ss_dssp GGTGGGHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHcCCHHHHHHHHHh
Confidence 21 12222222 22334667899999999999999999999888899999999988887764
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=1.4e-12 Score=175.10 Aligned_cols=755 Identities=13% Similarity=0.081 Sum_probs=445.1
Q ss_pred hhhhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCc--HHHHHHHHHHHHHHHHHhchh-------
Q 000159 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSN--APVQDKALDALIAYLKAADAD------- 86 (2013)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN--~~vqe~~leal~~~v~~~~~~------- 86 (2013)
|..-+.+.+=..|.+|-+.|.+..+. +.|.| ...+..++.|.| ..+...|.-.|-.++......
T Consensus 10 L~~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~~---~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~ 82 (861)
T d2bpta1 10 LENSILSPDQNIRLTSETQLKKLSND----NFLQF---AGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHH----CHHHH---HHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhc----CchHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHh
Confidence 44557789999999999999766543 22333 444556665543 445444443333332211100
Q ss_pred -----hhh-hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhh----hHHHHHHHHhhcCC-hhhHHHHHHHHHHH
Q 000159 87 -----AGR-YAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVD----VFLDVMEKAIKNKV-AKAVVPAIDVMFQA 155 (2013)
Q Consensus 87 -----~~~-~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~~----~v~~~L~~~~~~Kn-pKv~~~~l~~L~~~ 155 (2013)
... ....+-..++.-.....+.+|..+..++-.++..+-++ .+++.|...+.+.+ +.++.+++.+|..+
T Consensus 83 ~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i 162 (861)
T d2bpta1 83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162 (861)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred hhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 000 11122333343322357889998888888887765443 47777777776554 56788999999999
Q ss_pred HHHhCCCCcC----hhHHHHhhhhhh--cCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCC
Q 000159 156 LSEFGAKIIP----PKRILKMLPELF--DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG 229 (2013)
Q Consensus 156 l~~fG~~~i~----~k~il~~l~~ll--~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~ 229 (2013)
++.++...-. +.+++..+...+ .+.+..||..+..++..+..+++.. +... ...+..+
T Consensus 163 ~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~-~~~~---~~~~~~~------------ 226 (861)
T d2bpta1 163 CESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-MERE---GERNYLM------------ 226 (861)
T ss_dssp HHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-HTSH---HHHHHHH------------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHh-HHhh---hhhhHHH------------
Confidence 9888874322 234455554444 4567899999988877776665431 1000 0000000
Q ss_pred CCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHH
Q 000159 230 TARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL 309 (2013)
Q Consensus 230 ~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L 309 (2013)
.-+.+.+.+.+|+.|..+++.+
T Consensus 227 ----------------------------------------------------------~~l~~~~~~~~~~~~~~~~~~l 248 (861)
T d2bpta1 227 ----------------------------------------------------------QVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp ----------------------------------------------------------HHHHHHHTCSCHHHHHHHHHHH
T ss_pred ----------------------------------------------------------HhHHHHhcCCCHHHHHHHHHHH
Confidence 1122334556677888888888
Q ss_pred HHHhc-CCCCCCCChHHHHHH-HHHHhcccCHHHHHHHHHHHHHHHHHhhh-----------------cchhhhHhHHHH
Q 000159 310 TKLAS-TKRIAPGDFTEVCRT-LKKLITDVNIAVAVEAIQAIGNLARGLRT-----------------HFSGSSRFLLPV 370 (2013)
Q Consensus 310 ~~l~~-~pki~~~~~~~l~~~-L~k~l~D~N~~V~~~A~~~l~~La~~L~~-----------------~f~~~~~~llp~ 370 (2013)
..++. .++.....+..++.. +.....+.+..++..++..+..++..... -..++...++|.
T Consensus 249 ~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 328 (861)
T d2bpta1 249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN 328 (861)
T ss_dssp HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88774 332222212333333 33445588888999998888887764321 013456677888
Q ss_pred HHHHhccC-------cHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000159 371 LLEKLKEK-------KPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2013)
Q Consensus 371 LL~klkdk-------k~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2013)
+++.+.+. ...++.++..+++.+... +..-+..+++.+...+.+.+|..|..++..+..+........+..+
T Consensus 329 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~ 408 (861)
T d2bpta1 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY 408 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHH
Confidence 88777543 346888888999888875 1112344455556667789999999999988887776666666678
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHH-HHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCC
Q 000159 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE-RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (2013)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~-~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (2013)
++.+++.+..++.|.++.||+++..+++.+...++..... .++..+ ...+..
T Consensus 409 l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l----l~~l~~----------------------- 461 (861)
T d2bpta1 409 VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV----VQACLI----------------------- 461 (861)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH----HHHHHH-----------------------
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhh----hHHHHh-----------------------
Confidence 8999999999999999999999999999988877643110 000000 000100
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhcc
Q 000159 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (2013)
Q Consensus 522 s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~ 601 (2013)
T Consensus 462 -------------------------------------------------------------------------------- 461 (861)
T d2bpta1 462 -------------------------------------------------------------------------------- 461 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcHHHHhhhcCCCHHHHHHHHHHHHHHHHhcc-----CcchHH----HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHH
Q 000159 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-----NLDQSV----EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 672 (2013)
Q Consensus 602 l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-----~~~~~~----~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~ 672 (2013)
.+. .+-+.+..+...+...+.... ...... ..++.... -.+.+..+...+++++..++.
T Consensus 462 -------~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~al~~~i~ 529 (861)
T d2bpta1 462 -------GLQ-DHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAAN----RIDNEFNARASAFSALTTMVE 529 (861)
T ss_dssp -------HHT-SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHT----CSCCGGGHHHHHHHHHHHHHH
T ss_pred -------ccc-cChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHH
Confidence 000 011111112222222222110 011111 22222221 133445577778888888887
Q ss_pred HcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC
Q 000159 673 TATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (2013)
Q Consensus 673 ~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~ 752 (2013)
..+.-....+..+++.+.+.+... ...... .+.... ......++..++..+..++..++..
T Consensus 530 ~~~~~~~~~~~~l~~~~~~~l~~~-------------~~~~~~-~~~~~~-----~~~~~~l~~~~~~~l~~~~~~~~~~ 590 (861)
T d2bpta1 530 YATDTVAETSASISTFVMDKLGQT-------------MSVDEN-QLTLED-----AQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp HCCGGGHHHHHHHHHHHHHHHHHH-------------TTSCGG-GCCHHH-----HHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhh-hhhhhH-----HhHHHHHHHHHHHHHHHHHhcchhh
Confidence 655433333344444433332210 000000 000000 0001123445555666666665543
Q ss_pred CCC-hhhHHHHHHhcCCC-CCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccC
Q 000159 753 HLK-LKDLIDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (2013)
Q Consensus 753 ~l~-~k~li~~l~~~gL~-~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2013)
..+ ...++..+... +. ..+..||..+..+++.+...+|+.+.+|+..+-|.+
T Consensus 591 ~~~~~~~l~~~l~~~-l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l------------------------- 644 (861)
T d2bpta1 591 VEPVADMLMGLFFRL-LEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYL------------------------- 644 (861)
T ss_dssp TGGGHHHHHHHHHHH-HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHhhh-cccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH-------------------------
Confidence 222 34566666554 54 446789999999999999999998888776554433
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch--h
Q 000159 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--N 908 (2013)
Q Consensus 831 ~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds--N 908 (2013)
+..+.+.++.+|..|+..+..+.......+.+. ..+++..|...+++. +
T Consensus 645 ----------------------------~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~-~~~i~~~L~~~l~~~~~~ 695 (861)
T d2bpta1 645 ----------------------------LKALNQVDSPVSITAVGFIADISNSLEEDFRRY-SDAMMNVLAQMISNPNAR 695 (861)
T ss_dssp ----------------------------HHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHH-HHHHHHHHHHHHHCTTCC
T ss_pred ----------------------------HHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhh-HHHHHHHHHHHhCCCCCC
Confidence 344455567788889999998887544445544 378889998888664 4
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC-----chhh
Q 000159 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH-----LDKM 972 (2013)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-----------~~Vr~aa~~aL~~i~~~~g-----l~~l 972 (2013)
..+...++.+++.++..+|..|.+|+..+++.+.+.+.... ..+|+++..++..++.... +.++
T Consensus 696 ~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~ 775 (861)
T d2bpta1 696 RELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPY 775 (861)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 67889999999999999999999999999999999887543 2478999999988887653 2333
Q ss_pred HHHHHHH----HhcCC--CChhhHHHHHHHHHHHhccCCCC---CCh-hhhHHH-HHhhc--CCCChHHHHHHHHHHHHH
Q 000159 973 VPYVTTA----LTDAK--LGAEGRKDLFDWLSKQLTGLSGF---PDA-AHLLKP-ASIAM--TDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 973 l~~l~~~----L~~~k--~~p~~R~~~l~~L~~~l~~~~~~---~~~-~~ll~p-l~~~L--~D~~~dVR~aA~~~L~~l 1039 (2013)
++.|... +.+.. .....+..+++.+......++.. ..+ .+.+.. +..++ .+.+...|..|.-+...+
T Consensus 776 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 855 (861)
T d2bpta1 776 VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQ 855 (861)
T ss_dssp HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcchhHHHHHhhHHHHHHHHHHHhCcchhHHHHHHHHHHHHHH
Confidence 4444333 33221 12345555555555544444431 111 233434 44454 555777888888877777
Q ss_pred HHHcC
Q 000159 1040 LRAGG 1044 (2013)
Q Consensus 1040 ~~~~G 1044 (2013)
-+.+|
T Consensus 856 ~~~~~ 860 (861)
T d2bpta1 856 KRQLS 860 (861)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 66655
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=4.6e-13 Score=179.82 Aligned_cols=679 Identities=12% Similarity=0.126 Sum_probs=414.7
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCC---------
Q 000159 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAK--------- 162 (2013)
Q Consensus 94 v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~~~v~~~L~~~~~--~KnpKv~~~~l~~L~~~l~~fG~~--------- 162 (2013)
+...|-...++..+.+|..|.+-+..+.+-..+ .++..|...+. +.++.++..|...|.+.+..+...
T Consensus 6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~-~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~ 84 (861)
T d2bpta1 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFL-QFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRW 84 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhh
Confidence 333333334567999999999988877654334 45556666664 345678888877777654332210
Q ss_pred --CcCh--h-HHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccc
Q 000159 163 --IIPP--K-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKI 237 (2013)
Q Consensus 163 --~i~~--k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~ 237 (2013)
.++. + .+...+...+.+.++.||..+..++..+.++..+.. .- |..+..
T Consensus 85 ~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~-------~w-peli~~------------------ 138 (861)
T d2bpta1 85 ITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG-------AW-PELMKI------------------ 138 (861)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT-------CC-HHHHHH------------------
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC-------ch-HHHHHH------------------
Confidence 1221 2 234456666777788888887777777665543210 00 000111
Q ss_pred hhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhh-ccCCHHHHHHHHHHHHHHhcC-
Q 000159 238 RAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV-KATKWSERKDAVAELTKLAST- 315 (2013)
Q Consensus 238 rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l-~s~kWkeR~eaL~~L~~l~~~- 315 (2013)
+.+.+ .+..+..|..++..|..++..
T Consensus 139 ----------------------------------------------------L~~~~~s~~~~~~~~~al~~l~~i~e~~ 166 (861)
T d2bpta1 139 ----------------------------------------------------MVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp ----------------------------------------------------HHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred ----------------------------------------------------HHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 11111 112344566677777776632
Q ss_pred -CCCCC--CChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhcch--hhhHhHHHHHHHHhccCcHHHHHHHHH
Q 000159 316 -KRIAP--GDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQ 388 (2013)
Q Consensus 316 -pki~~--~~~~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~--~~~~~llp~LL~klkdkk~~V~~aa~~ 388 (2013)
+.+.. .....++..+.+.+. +.+..|+..|+.++..+...+...|. .....+++.+.+.+.+....++..+..
T Consensus 167 ~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 246 (861)
T d2bpta1 167 DPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFG 246 (861)
T ss_dssp STTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHH
Confidence 22211 122334443333332 77888999999999998887777665 345678888999999999999999999
Q ss_pred HHHHHHHhcCCCh----HhHHHHH-HHHhhcCChHHHHHHHHHHHHHHHhcC----------------hhHHHHhhhhHH
Q 000159 389 TLQAMHKAGCLNL----VDVVEDV-KTSVKNKVPLVRSLTLNWVTFCIETSS----------------KAAVLKVHKDYV 447 (2013)
Q Consensus 389 aL~ai~~~~~~~l----~~il~~l-~~~l~~Knp~vR~~~l~~L~~~l~~~~----------------~~~l~~~l~~l~ 447 (2013)
++..++......+ ..++..+ ....++.++.+|..++.++..+..... .......+..++
T Consensus 247 ~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 326 (861)
T d2bpta1 247 CLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp HHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987611112 2333333 356678999999999998876543210 011123445666
Q ss_pred HHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCC
Q 000159 448 PICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSG 520 (2013)
Q Consensus 448 p~l~k~l~-------Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~ 520 (2013)
|.+...+. |.+..+|.++..++..+....|+..+..++
T Consensus 327 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------------------------- 371 (861)
T d2bpta1 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVL----------------------------------- 371 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHH-----------------------------------
T ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhc-----------------------------------
Confidence 66666663 344467777777777777776654222111
Q ss_pred CCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhc
Q 000159 521 GSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600 (2013)
Q Consensus 521 ~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~ 600 (2013)
T Consensus 372 -------------------------------------------------------------------------------- 371 (861)
T d2bpta1 372 -------------------------------------------------------------------------------- 371 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccC--cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCc
Q 000159 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFP 678 (2013)
Q Consensus 601 ~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~--~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~ 678 (2013)
+.+...+.+.+|+.|..++..+......... .....+.++..+.. .+.|.+..|...++.++..+++..+...
T Consensus 372 ---~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T d2bpta1 372 ---EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN--LMNDQSLQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp ---HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH--GGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred ---chhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH--HhcCcchhhhhHHHHHHHHHHHHhchhh
Confidence 1122334556788998888888766544221 11122333333322 3567778888888877777666543211
Q ss_pred --hhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-
Q 000159 679 --KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK- 755 (2013)
Q Consensus 679 --~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~- 755 (2013)
...+..++..++..+ ..+++++..++..+..++..+......
T Consensus 447 ~~~~~~~~ll~~l~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 491 (861)
T d2bpta1 447 DPQQHLPGVVQACLIGL-----------------------------------QDHPKVATNCSWTIINLVEQLAEATPSP 491 (861)
T ss_dssp CTTTTHHHHHHHHHHHH-----------------------------------TSCHHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred hhHHhhhhhhHHHHhcc-----------------------------------ccChHHHHHHHHHHHHHHHHhhhcccch
Confidence 112222222222221 345666666666666666554432211
Q ss_pred ----hhhHHHHHHhc-CCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccC
Q 000159 756 ----LKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (2013)
Q Consensus 756 ----~k~li~~l~~~-gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2013)
...++..+... .-.+.+..+|..+..++..+....+..+.+++..+.+.....+...+.....
T Consensus 492 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~------------ 559 (861)
T d2bpta1 492 IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDEN------------ 559 (861)
T ss_dssp GGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGG------------
T ss_pred hhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------
Confidence 12233333222 1245577899999999999999999988888877777776666654322110
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch-hH
Q 000159 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NK 909 (2013)
Q Consensus 831 ~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~ 909 (2013)
.+.... ....+..+......+..++......+.+. ..+++..+...+.+. ..
T Consensus 560 ----------------------~~~~~~----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~ 612 (861)
T d2bpta1 560 ----------------------QLTLED----AQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSA 612 (861)
T ss_dssp ----------------------GCCHHH----HHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGG
T ss_pred ----------------------hhhhhH----HhHHHHHHHHHHHHHHHHHhcchhhHHHH-HHHHHHHHhhhcccCCch
Confidence 000000 00123445566666777776543444444 477888888887554 45
Q ss_pred HHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC
Q 000159 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA 983 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~ 983 (2013)
.++..++.+++.++..+|..|.+|+..++|.++..+.|....||..|..++..++..++ .+.+++.+...|++.
T Consensus 613 ~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~ 692 (861)
T d2bpta1 613 FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP 692 (861)
T ss_dssp GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCC
Confidence 67888999999999999999999999999999999999999999999999999999886 245566667777766
Q ss_pred CCChhhHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCC-----------hHHHHHHHHHHHHHHHHcCh
Q 000159 984 KLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKS-----------SDVRKAAEACIVEILRAGGQ 1045 (2013)
Q Consensus 984 k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~-----------~dVR~aA~~~L~~l~~~~G~ 1045 (2013)
..+..+|..++..+...+...+.. +.+..+++.+.+.+.... .+||+++..++..++..++.
T Consensus 693 ~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 767 (861)
T d2bpta1 693 NARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD 767 (861)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556788988888877766555432 122334444555554332 35788888888888776653
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.8e-15 Score=206.91 Aligned_cols=723 Identities=14% Similarity=0.111 Sum_probs=428.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchh-----hhhhHHHH
Q 000159 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADAD-----AGRYAKEV 94 (2013)
Q Consensus 20 l~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~-----~~~~~~~v 94 (2013)
+.+.+=+.|..+..-+...+.... + ..|-++.+.+...+.+.|..+++.++.+|...++..... .......+
T Consensus 97 l~~~~~~vr~~~~~~i~~i~~~~~-~--~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~l 173 (888)
T d1qbkb_ 97 IGDSSPLIRATVGILITTIASKGE-L--QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 173 (888)
T ss_dssp GGCCCSSTTTTTTTTTHHHHTTTS-S--CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTT
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhC-c--cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Confidence 334444445555444444443211 1 124445555666777888888899999888776543221 11223457
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhh------hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcC-hh
Q 000159 95 CDAIAAKCLTGRPKTVEKAQAVFMLWVELE------AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PK 167 (2013)
Q Consensus 95 ~~~LveK~l~~k~~~k~~A~~~ll~~~E~~------~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~-~k 167 (2013)
++.++.-.-...+.+|..|..++-.++... ..+.+++.|.....+.+++++..++.+|..++..+..+..+ +.
T Consensus 174 l~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~ 253 (888)
T d1qbkb_ 174 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 253 (888)
T ss_dssp THHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTT
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 777776533356778888888877665431 12345566666778889999999999998887776665433 45
Q ss_pred HHHHhhhhhhcCCChHHHHHHHHHHHHHHHhh-CCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhh
Q 000159 168 RILKMLPELFDHQDQNVRASSKGLTLELCRWI-GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELG 246 (2013)
Q Consensus 168 ~il~~l~~ll~~~d~~VR~~a~~l~~ely~~l-G~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~ 246 (2013)
.+++.+...+.+.|..||-+|..++..+...- ....+.+++ ..+-|.. ........ ..... ..
T Consensus 254 ~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l-~~l~~~l-----------~~~~~~~~---~~~~~-~~ 317 (888)
T d1qbkb_ 254 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL-PKLIPVL-----------VNGMKYSD---IDIIL-LK 317 (888)
T ss_dssp TTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTST-TTTTTTT-----------TTSSCCSS---TTHHH-HT
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHH-----------HHHhhcch---HHHHH-Hh
Confidence 67778888889999999999876643322100 000010100 1110000 00000000 00000 00
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCCCCCC-------CCcccccccCcc--hhhhhhhccCCHHHHHHHHHHHHHHhcCCC
Q 000159 247 QELISEDVGPGPSEESTADVPPEIDEYEL-------VDPVDILTPLEK--SGFWEGVKATKWSERKDAVAELTKLASTKR 317 (2013)
Q Consensus 247 ~ea~~~~~g~~~~~~~~~~~~~~iD~~dl-------~~~vdIl~kl~~--~~f~~~l~s~kWkeR~eaL~~L~~l~~~pk 317 (2013)
.....+ .......+++.++-. ....+....... .++.+......|..|+.+...|..+...
T Consensus 318 ----~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~-- 387 (888)
T d1qbkb_ 318 ----GDVEED----ETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANV-- 387 (888)
T ss_dssp ----TTSSCC----TTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTT--
T ss_pred ----hhhhhh----hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhh--
Confidence 000000 000000111111000 000000000110 1112223447799999888777665532
Q ss_pred CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc
Q 000159 318 IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG 397 (2013)
Q Consensus 318 i~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~ 397 (2013)
....-+..++..+...+.+.+..++..|+.+++.++.+....+.+++..++|.++..+.|.++.||.++..++..+....
T Consensus 388 ~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 467 (888)
T d1qbkb_ 388 YRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 467 (888)
T ss_dssp CCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 11233567888888899999999999999999999999888899999999999999999999999999999998776541
Q ss_pred -CC----ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 398 -CL----NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 398 -~~----~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
.. .+..+++.++..+.+.++.|+..++..|..+.+.... .+.++++.+++.+..++.+....++..+.++++++
T Consensus 468 ~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l 546 (888)
T d1qbkb_ 468 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT-ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTL 546 (888)
T ss_dssp HSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTT-SSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 11 1356788888999999999999999999988876554 35577899999999999999999999999999999
Q ss_pred HHHhCchhH-HHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCC
Q 000159 473 AKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAA 551 (2013)
Q Consensus 473 ~~~~Ge~~~-~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~ 551 (2013)
...+|+... ..+++.+-+. +.+..... .
T Consensus 547 ~~~~~~~~~~~~~~~~l~~~----l~~~~~~~---------------------------------------~-------- 575 (888)
T d1qbkb_ 547 ADSVGHHLNKPEYIQMLMPP----LIQKWNML---------------------------------------K-------- 575 (888)
T ss_dssp HHHHGGGGCSHHHHHHHHHH----HHHHHTTS---------------------------------------C--------
T ss_pred HHhhhccccchHHHHHHHHH----HHHHHHhc---------------------------------------c--------
Confidence 988886421 1222222211 11111000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 000159 552 PASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA 631 (2013)
Q Consensus 552 ~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~ 631 (2013)
+. . .. +...++.+.
T Consensus 576 ---------------------------~~-----~--~~---------------------------~~~~le~l~----- 589 (888)
T d1qbkb_ 576 ---------------------------DE-----D--KD---------------------------LFPLLECLS----- 589 (888)
T ss_dssp ---------------------------TT-----C--TT---------------------------HHHHHHHHH-----
T ss_pred ---------------------------cc-----h--HH---------------------------HHHHHHHHH-----
Confidence 00 0 00 000111111
Q ss_pred ccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHh
Q 000159 632 VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSE 711 (2013)
Q Consensus 632 ~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e 711 (2013)
.++..+.. ++..-...+.+..+.++..... .
T Consensus 590 ---------~i~~~~~~--~~~~~~~~~~~~~~~~l~~~l~----------------------~---------------- 620 (888)
T d1qbkb_ 590 ---------SVATALQS--GFLPYCEPVYQRCVNLVQKTLA----------------------Q---------------- 620 (888)
T ss_dssp ---------HHHHHSTT--TTHHHHHHHHHHHHHHHHHHHH----------------------H----------------
T ss_pred ---------HHHHHhHH--HHhhhHHHHHHHHHHHHHHHHH----------------------H----------------
Confidence 11111110 1111001111111111110000 0
Q ss_pred hhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHH
Q 000159 712 AVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (2013)
Q Consensus 712 ~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~---~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~ 788 (2013)
.+...................++..+..+++.+|....+ ...+++.+..+ +.+.++.||..|..+++.|..
T Consensus 621 -----~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~-l~~~~~~vr~~a~~llgdl~~ 694 (888)
T d1qbkb_ 621 -----AMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC-MQDKMPEVRQSSFALLGDLTK 694 (888)
T ss_dssp -----HHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHH-HTCSSHHHHHHHHHHHHHHHH
T ss_pred -----HHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHH-hCCCChHHHHHHHHHHHHHHH
Confidence 000000000011223334445556666666666653211 12366677776 999999999999999999999
Q ss_pred hhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChH
Q 000159 789 FVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWK 868 (2013)
Q Consensus 789 ~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk 868 (2013)
..++.+.+|+.++-| .++..+.+..+.
T Consensus 695 ~~~~~~~~~l~~~~~-----------------------------------------------------~l~~~L~~~~~~ 721 (888)
T d1qbkb_ 695 ACFQHVKPCIADFMP-----------------------------------------------------ILGTNLNPEFIS 721 (888)
T ss_dssp HCGGGTGGGHHHHHH-----------------------------------------------------HHHHTCCGGGHH
T ss_pred hhhHHHHHHHHHHHH-----------------------------------------------------HHHHHhCcCCHH
Confidence 998887777654433 233444555667
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch--hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhC
Q 000159 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946 (2013)
Q Consensus 869 ~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~ 946 (2013)
+|..++..++.|+...+..+.|.. .+++..|...+++. +..|...++.++|.|+...+..+.+|+..+++.++..|.
T Consensus 722 v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~ 800 (888)
T d1qbkb_ 722 VCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR 800 (888)
T ss_dssp HHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhc
Confidence 888999999999886666777774 89999999999654 567989999999999999988899999999999999997
Q ss_pred CC-cHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhc-CCCChhhHHHHHHHHH
Q 000159 947 DN-KKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTD-AKLGAEGRKDLFDWLS 998 (2013)
Q Consensus 947 D~-k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~-~k~~p~~R~~~l~~L~ 998 (2013)
+. ...-++.+..++..++..-+ +..-+..+..++.+ .+..++++....+.|.
T Consensus 801 ~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~ 856 (888)
T d1qbkb_ 801 NIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILH 856 (888)
T ss_dssp TSCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 63 23346677888888876532 22333444444432 1113455555554444
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.2e-11 Score=161.08 Aligned_cols=749 Identities=13% Similarity=0.108 Sum_probs=418.8
Q ss_pred hhhhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCc--HHHHHHHHHHHHHHHHHhch----h---
Q 000159 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSN--APVQDKALDALIAYLKAADA----D--- 86 (2013)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN--~~vqe~~leal~~~v~~~~~----~--- 86 (2013)
+-+...|.+=..|.+|-+.|.+.... +.|.| ...+...+.|.+ ..+...|.-.|-.++..... .
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~f---~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~ 78 (876)
T d1qgra_ 6 ILEKTVSPDRLELEAAQKFLERAAVE----NLPTF---LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (876)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHhc----ChhHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhc
Confidence 45566788999999999999877643 12333 444445554443 34555555555444422111 0
Q ss_pred ----hh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHH
Q 000159 87 ----AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQA 155 (2013)
Q Consensus 87 ----~~-~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~L~~~ 155 (2013)
.. .....+-..++. ++.+....+..+.+++..++..+-+ ..+++.|...+.+. ++.++.+++.+|..+
T Consensus 79 ~~~~i~~~~k~~ik~~ll~-~l~~~~~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i 157 (876)
T d1qgra_ 79 RWLAIDANARREVKNYVLH-TLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHHTSCHHHHHHHHHHHHH-HTTTCCSSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 00 112223333443 3443333444455666666655433 25778887776544 367888999999998
Q ss_pred HHHhCCCCc--ChhHHHHhhhhhhcCC--ChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000159 156 LSEFGAKII--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (2013)
Q Consensus 156 l~~fG~~~i--~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (2013)
+.+++...+ ....+++.+...+.+. +..||..+...+..++.++... . . .......+
T Consensus 158 ~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~-----~-~--~~~~~~~i----------- 218 (876)
T d1qgra_ 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-----F-D--KESERHFI----------- 218 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH-----H-T--SHHHHHHH-----------
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhh-----h-h--HHHHHHHH-----------
Confidence 887765332 2345777777777544 5678888776655544433211 0 0 00000000
Q ss_pred CCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHH
Q 000159 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK 311 (2013)
Q Consensus 232 ~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~ 311 (2013)
. ..+...+.+.+|+.|+.+++.|..
T Consensus 219 ------------------------------------------------------~-~~l~~~~~~~~~~v~~~~~~~l~~ 243 (876)
T d1qgra_ 219 ------------------------------------------------------M-QVVCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp ------------------------------------------------------H-HHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------H-HHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 112223445667788888888888
Q ss_pred Hhc-CCCCCCCC-hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh--------------------c-chhhhHhHH
Q 000159 312 LAS-TKRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT--------------------H-FSGSSRFLL 368 (2013)
Q Consensus 312 l~~-~pki~~~~-~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~--------------------~-f~~~~~~ll 368 (2013)
+.+ .+...... ...+...+...+.+.+..++..++..+..++..-.. . ...+...++
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (876)
T d1qgra_ 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (876)
T ss_dssp HHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 774 33322111 123455566666777777888888877777652110 0 123344556
Q ss_pred HHHHHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000159 369 PVLLEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (2013)
Q Consensus 369 p~LL~klkd-------kk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (2013)
|.+...+.. ....++.++..++..+... +..-++.+++.+...+.+.+|..|..++..+..+........+.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~ 403 (876)
T d1qgra_ 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 666555432 3335889999999988876 11224566777778888999999999988888776666666666
Q ss_pred HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHH-HHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCC
Q 000159 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE-RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519 (2013)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~-~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~ 519 (2013)
.++..+++.+...+.|.++.||.+|..+++.+...+++.... .++..+- ..+...
T Consensus 404 ~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~----~~l~~~-------------------- 459 (876)
T d1qgra_ 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL----QCLIEG-------------------- 459 (876)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHH----HHHHHH--------------------
T ss_pred HHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHH----HHHHHH--------------------
Confidence 778999999999999999999999999999998887653110 1111110 011110
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhh
Q 000159 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLG 599 (2013)
Q Consensus 520 ~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~ 599 (2013)
T Consensus 460 -------------------------------------------------------------------------------- 459 (876)
T d1qgra_ 460 -------------------------------------------------------------------------------- 459 (876)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhc---------------cCcchHHHH----HHHHHhcCCCCcccHHHHH
Q 000159 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAV---------------QNLDQSVEI----LVRLVCMLPGWSEKNVQVQ 660 (2013)
Q Consensus 600 ~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~---------------~~~~~~~~~----lv~~L~~~pgl~DsN~qV~ 660 (2013)
+ +.+++.+..+...+..+.... .....+.+. ++..+.. ....+..+.
T Consensus 460 ----------l-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~---~~~~~~~~~ 525 (876)
T d1qgra_ 460 ----------L-SAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR---PDGHQNNLR 525 (876)
T ss_dssp ----------T-TSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTS---CSSCSTTHH
T ss_pred ----------h-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hccccHhHH
Confidence 0 011111222222222111110 001111222 2222211 112223345
Q ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCCh----hHHH
Q 000159 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP----KVLS 736 (2013)
Q Consensus 661 ~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~Knp----Kv~~ 736 (2013)
..+++.+..++..........+..+++.+++.+.. +..... ........ +.+.
T Consensus 526 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------~l~~~~----------~~~~~~~~~~~~~~~~ 582 (876)
T d1qgra_ 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQ-------------VLQMES----------HIQSTSDRIQFNDLQS 582 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHH-------------HHTTTT----------SCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-------------HHHHhh----------hhcchhhhHHHHHHHH
Confidence 55666666665544333333333333333333211 000000 00000001 1111
Q ss_pred HHHHHHHHHHHHhCCCCC--ChhhHHHHHHhcCCCC--CcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHH
Q 000159 737 EGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (2013)
Q Consensus 737 ~~l~~L~~li~~fG~~~l--~~k~li~~l~~~gL~~--~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (2013)
-.+.++..++...|.... ....++..+... +.. .+..||..+..+++.+...+|..+..|+..+.|.+++.+..
T Consensus 583 ~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~-l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~- 660 (876)
T d1qgra_ 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN- 660 (876)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcchhhhhhhHHHHHHHHHHH-HhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhC-
Confidence 222233333333232111 123455555554 543 45679999999999999999998888876666655554432
Q ss_pred HhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC
Q 000159 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892 (2013)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~ 892 (2013)
..++.+|..|+..+..+.......+.|.
T Consensus 661 ---------------------------------------------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~- 688 (876)
T d1qgra_ 661 ---------------------------------------------------YAEYQVCLAAVGLVGDLCRALQSNIIPF- 688 (876)
T ss_dssp ---------------------------------------------------CTTHHHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred ---------------------------------------------------CCcHHHHHHHHHHHHHHHHHhHHhhhhh-
Confidence 1135678889988888887555566665
Q ss_pred hhhHHHHHHhcccchh--HHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCc-----------HHHHHHHHHH
Q 000159 893 TGELFGGLRGRLYDSN--KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTV 959 (2013)
Q Consensus 893 ~~eL~~~L~~rL~DsN--~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-----------~~Vr~aa~~a 959 (2013)
..+++..|...++|.+ ..++..++.+++.|+..+|..|.+|+..+++.+...++... ..+|+++..|
T Consensus 689 ~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 768 (876)
T d1qgra_ 689 CDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEA 768 (876)
T ss_dssp HHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHH
Confidence 3788999999997754 67889999999999999999999999999999988776321 1357777777
Q ss_pred HHHHHHhcC------------chhhHHHHHHHH----hcCCCChhhHHHHHHHHHHHhccCCCC--CCh--hhhHHH-HH
Q 000159 960 LDAWLAAVH------------LDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSGF--PDA--AHLLKP-AS 1018 (2013)
Q Consensus 960 L~~i~~~~g------------l~~ll~~l~~~L----~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~--~~ll~p-l~ 1018 (2013)
...++..+. +...++.|...+ .+...+..++..+++.+.......+.. ..+ ...+.. +.
T Consensus 769 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~ 848 (876)
T d1qgra_ 769 YTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLT 848 (876)
T ss_dssp HHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 777665421 122223333222 233334556666555555444444331 111 133444 44
Q ss_pred hhcCCCChHHHHHHHHHHHHHHH
Q 000159 1019 IAMTDKSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~L~~l~~ 1041 (2013)
.+..+.+...|..|.-+...+.+
T Consensus 849 ~~~~s~~~~~~~~a~~~~~~~~~ 871 (876)
T d1qgra_ 849 EGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH
Confidence 46778888888888776655543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=6.5e-10 Score=149.21 Aligned_cols=639 Identities=14% Similarity=0.135 Sum_probs=361.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhh-cchhhhHhHHHHHHHHhc
Q 000159 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRT-HFSGSSRFLLPVLLEKLK 376 (2013)
Q Consensus 300 keR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~-~f~~~~~~llp~LL~klk 376 (2013)
..|+.+...+..++.. .+..+.+.++++.|...+. |.+..++..++.+++.+++.++. .+..+...+++.++..+.
T Consensus 104 ~~~~~~a~~i~~i~~~-~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~ 182 (876)
T d1qgra_ 104 YRPSSASQCVAGIACA-EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR 182 (876)
T ss_dssp SSSCHHHHHHHHHHHH-HGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH-HCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHc
Confidence 3455555566666532 1222446778888888775 66677888999999999998864 467899999999999885
Q ss_pred c--CcHHHHHHHHHHHHHHHHhc----CC-C-hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHH
Q 000159 377 E--KKPTVAESLTQTLQAMHKAG----CL-N-LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYV 447 (2013)
Q Consensus 377 d--kk~~V~~aa~~aL~ai~~~~----~~-~-l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~ 447 (2013)
+ ....++.++..++..++... .. . ...+++.+...+++.++.+|..++..|..++...+.. +.+++ +.+.
T Consensus 183 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~~~~~l~ 261 (876)
T d1qgra_ 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY-METYMGPALF 261 (876)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG-CHHHHTTTHH
T ss_pred CcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHH
Confidence 4 45678888888877665440 00 0 1235666677788999999999999999988876543 23333 4567
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCC
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE 527 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 527 (2013)
+.+...+.+.+.+++..+.+.+..++...... ... ..+...... ........ ...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~---------~~~~~~~~~--~~~~~~~~----------~~~ 316 (876)
T d1qgra_ 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDL----AIE---------ASEAAEQGR--PPEHTSKF----------YAK 316 (876)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH----HHH---------HHHHHHHSS--CCSSCCCC----------HHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHH----HHH---------hhHHHHhhh--hHHHHHHH----------HHH
Confidence 77888899999999998888776665432211 110 011111100 00000000 000
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHH----HHHHhh----
Q 000159 528 ASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE----IESRLG---- 599 (2013)
Q Consensus 528 ~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee----~e~~~~---- 599 (2013)
.........-... ... .+ ++......+... +-..+.
T Consensus 317 ~~~~~l~~~l~~~-~~~---------------------------------~~--~~~~~~~~~~~~~a~~~l~~l~~~~~ 360 (876)
T d1qgra_ 317 GALQYLVPILTQT-LTK---------------------------------QD--ENDDDDDWNPCKAAGVCLMLLATCCE 360 (876)
T ss_dssp HHHHHHHHHHHHH-TTC---------------------------------CC--SSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhhHHH-HHh---------------------------------cc--cccccccchHHHHHHHHHHHHHHHhh
Confidence 0000000000000 000 00 000011111111 111111
Q ss_pred ----ccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccC--cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHH
Q 000159 600 ----SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT 673 (2013)
Q Consensus 600 ----~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~--~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~ 673 (2013)
..+-+-+.+.+.+.+|+.|.+++..+......... .......++..+. +.+.|.+..|...++.++..+++.
T Consensus 361 ~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~--~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI--ELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH--HHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH--HhhcCCccHHHHHHHHHHHHHHHH
Confidence 11224456788899999999999888766544221 1122233333332 136789999999999999999887
Q ss_pred cCC--CchhhHHHHHHHHHhhhcC-hhhhHHHHHHHHHHHhhhC--------------------hhHHHHHHHHHhh--h
Q 000159 674 ATK--FPKKCVVLCLLGISERVAD-IKTRAHAMKCLTTFSEAVG--------------------PGFIFERLYKIMK--D 728 (2013)
Q Consensus 674 ~~~--~~~~~~~~il~~LveKlgD-~K~r~~a~e~L~~l~e~~~--------------------~~~Vl~~L~~~l~--~ 728 (2013)
.+. .....+..+++.++..+.+ ++++..+..++..+++... .+.++..++..+. .
T Consensus 439 ~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~ 518 (876)
T d1qgra_ 439 LPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD 518 (876)
T ss_dssp CGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS
T ss_pred cchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 543 2234577788888888877 4577777777777766421 1123333443331 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCC-h----hhHHHHHHhcCCCC----CcHhHHHHHHHHHHHHHHhhChhHHhhhh
Q 000159 729 HKNPKVLSEGILWMVSAVEDFGVSHLK-L----KDLIDFCKDTGLQS----SAAATRNATIKLLGALHKFVGPDIKGFLA 799 (2013)
Q Consensus 729 ~KnpKv~~~~l~~L~~li~~fG~~~l~-~----k~li~~l~~~gL~~----~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~ 799 (2013)
..+..++..++..+..++........+ + ..+++.+... +.. .+...+.....+.
T Consensus 519 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~---------------- 581 (876)
T d1qgra_ 519 GHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQV-LQMESHIQSTSDRIQFNDLQ---------------- 581 (876)
T ss_dssp SCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHH-HTTTTSCCSTTHHHHHHHHH----------------
T ss_pred cccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhcchhhhHHHHHHH----------------
Confidence 234556667777666666543321110 0 1112222111 110 0111111111111
Q ss_pred hccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcC--CCChHHHHHHHHHH
Q 000159 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE--SPDWKVRLESIEAV 877 (2013)
Q Consensus 800 ~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~--d~~Wk~R~eale~l 877 (2013)
..+...+...+.+...+. . ..+.+.+.+.++..+. +.++.+|..++..+
T Consensus 582 ---~~l~~~l~~~~~~~~~~~-----------------------~---~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l 632 (876)
T d1qgra_ 582 ---SLLCATLQNVLRKVQHQD-----------------------A---LQISDVVMASLLRMFQSTAGSGGVQEDALMAV 632 (876)
T ss_dssp ---HHHHHHHHHHHTTSCHHH-----------------------H---HTTHHHHHHHHHHHC-----CCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcchhh-----------------------h---hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 111111111111110000 0 0001112222333222 33567788888889
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhcccch-hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCc--HHHHH
Q 000159 878 NKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRE 954 (2013)
Q Consensus 878 ~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k--~~Vr~ 954 (2013)
..++...+..+.+. +..+++.|...+.+. +..++..|+.+++.++..++..+.+|+..+++.++..+.+.. ..++.
T Consensus 633 ~~l~~~~~~~~~~~-l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~ 711 (876)
T d1qgra_ 633 STLVEVLGGEFLKY-MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKP 711 (876)
T ss_dssp HHHHHHHGGGGGGG-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHH
T ss_pred HHHHHHcchhhHHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHH
Confidence 88887544445554 478888888888654 467999999999999999999999999999999999998754 57999
Q ss_pred HHHHHHHHHHHhcC--chhhHHHHHHHH----hcC--CCC-------hhhHHHHHHHHHHHhccC---CC--CC---Chh
Q 000159 955 CTLTVLDAWLAAVH--LDKMVPYVTTAL----TDA--KLG-------AEGRKDLFDWLSKQLTGL---SG--FP---DAA 1011 (2013)
Q Consensus 955 aa~~aL~~i~~~~g--l~~ll~~l~~~L----~~~--k~~-------p~~R~~~l~~L~~~l~~~---~~--~~---~~~ 1011 (2013)
++..|++.++..+| ..++++.+.+.| ... ..+ ..+|..++......+... .. .. .+.
T Consensus 712 ~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 791 (876)
T d1qgra_ 712 QILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQ 791 (876)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSG
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 99999999999887 234455444443 311 001 123444444433333221 11 11 123
Q ss_pred hhHHHHHh---h---cCCCChHHHHHHHHHHHHHHHHcChhHHHH
Q 000159 1012 HLLKPASI---A---MTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (2013)
Q Consensus 1012 ~ll~pl~~---~---L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~ 1050 (2013)
..+.+++. . -.+.+.+++..|..+++.+...+|.+....
T Consensus 792 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~ 836 (876)
T d1qgra_ 792 PRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKL 836 (876)
T ss_dssp GGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344332 2 267889999999999999999999875443
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.3e-07 Score=116.08 Aligned_cols=382 Identities=11% Similarity=0.049 Sum_probs=245.6
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHH-----------
Q 000159 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT----------- 673 (2013)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~----------- 673 (2013)
.+++++.|.|=..|.+|-+.|.++.....+ .....++..+.. .+....++..+.-.++..+..
T Consensus 4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~~~--~~~~~l~~il~~----~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~ 77 (458)
T d1ibrb_ 4 TILEKTVSPDRLELEAAQKFLERAAVENLP--TFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 77 (458)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcCch--HHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence 466788889999999999999988765211 123444444432 111233455554444433321
Q ss_pred -cCCCchhhHHHHHHHHHhhhcChh-hhHHHHHHHHHHHhhhChh----HHHHHHHHHhh-hCCChhHHHHHHHHHHHHH
Q 000159 674 -ATKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSEAVGPG----FIFERLYKIMK-DHKNPKVLSEGILWMVSAV 746 (2013)
Q Consensus 674 -~~~~~~~~~~~il~~LveKlgD~K-~r~~a~e~L~~l~e~~~~~----~Vl~~L~~~l~-~~KnpKv~~~~l~~L~~li 746 (2013)
...+.......+...++.-+.+.. .+..+..++..++....+. .+++.++..+. ...++.++..++..+..+.
T Consensus 78 ~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 157 (458)
T d1ibrb_ 78 RWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 157 (458)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 123334445556666777666632 2223445666665543332 35666666653 2456778888899988888
Q ss_pred HHhCCCCCC--hhhHHHHHHhcCCC--CCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCC
Q 000159 747 EDFGVSHLK--LKDLIDFCKDTGLQ--SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (2013)
Q Consensus 747 ~~fG~~~l~--~k~li~~l~~~gL~--~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p 822 (2013)
...+..... ...++..+... +. +.+..||.+|+++++.+..+........ ...
T Consensus 158 ~~~~~~~~~~~~~~il~~~~~~-l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~--~~~-------------------- 214 (458)
T d1ibrb_ 158 QDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDKE--SER-------------------- 214 (458)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH--HHH--------------------
T ss_pred hhccchhhhhhHHHHHHHHHHH-hcccccCHHHHHHHHHHHHHHHHhhhhhhhhH--HHH--------------------
Confidence 766544332 34566666554 54 4567899999999887765433221100 000
Q ss_pred CCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000159 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2013)
Q Consensus 823 ~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~ 902 (2013)
..+.+.+...+.+.+|++|..+++.+..++......+.+....-+...+..
T Consensus 215 -----------------------------~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~ 265 (458)
T d1ibrb_ 215 -----------------------------HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 265 (458)
T ss_dssp -----------------------------HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred -----------------------------HHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 012234445567789999999999999999866556666643334555566
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhCh---------------------hhHhhhhhHHHHHHHHhC-------CCcHHHHH
Q 000159 903 RLYDSNKNLVMATLITLGAVASAMGP---------------------AVEKSSKGVLSDILKCLG-------DNKKHMRE 954 (2013)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~alg~---------------------~~~~~~~~llp~ll~~L~-------D~k~~Vr~ 954 (2013)
.+.+.+..++..|+..+..++..... ....+...++|.+...+. |....+|.
T Consensus 266 ~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 345 (458)
T d1ibrb_ 266 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 345 (458)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHH
Confidence 67788889999999999888754211 123455667777777664 33446999
Q ss_pred HHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChHH
Q 000159 955 CTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDV 1028 (2013)
Q Consensus 955 aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dV 1028 (2013)
++..++..++...| ++.+++.+...+.++ ++..|..++..|......... .+.+..+++.++.+++|.++.|
T Consensus 346 ~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~--~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~V 423 (458)
T d1ibrb_ 346 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 423 (458)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999887 344555666666665 588898888777765543322 2345667777999999999999
Q ss_pred HHHHHHHHHHHHHHcChh
Q 000159 1029 RKAAEACIVEILRAGGQE 1046 (2013)
Q Consensus 1029 R~aA~~~L~~l~~~~G~~ 1046 (2013)
|.+|..+++.+...++..
T Consensus 424 R~~a~~~l~~i~~~~~~~ 441 (458)
T d1ibrb_ 424 RDTAAWTVGRICELLPEA 441 (458)
T ss_dssp HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999888764
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=3e-07 Score=112.63 Aligned_cols=382 Identities=13% Similarity=0.086 Sum_probs=238.5
Q ss_pred hhhhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCc--HHHHHHHHHHHHHHHHHhchh-------
Q 000159 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSN--APVQDKALDALIAYLKAADAD------- 86 (2013)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN--~~vqe~~leal~~~v~~~~~~------- 86 (2013)
+.+.+.+.+=..|.+|-+.|.+.+.+ +.|.| ...+...+.|.| ..+...|.-.+..++......
T Consensus 5 il~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~---~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~ 77 (458)
T d1ibrb_ 5 ILEKTVSPDRLELEAAQKFLERAAVE----NLPTF---LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 77 (458)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHhc----CchHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence 45677788899999999988887754 22344 333334444433 445555554454444322110
Q ss_pred ----hh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhc--CChhhHHHHHHHHHHH
Q 000159 87 ----AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKN--KVAKAVVPAIDVMFQA 155 (2013)
Q Consensus 87 ----~~-~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~----~~v~~~L~~~~~~--KnpKv~~~~l~~L~~~ 155 (2013)
.. .....+...+++-.....+. +..+..++..++..+.+ ..+++.|...+.+ .++..+..++.++..+
T Consensus 78 ~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 156 (458)
T d1ibrb_ 78 RWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 156 (458)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 00 11234555555542222232 33344444445444322 2567777766654 4567778888888888
Q ss_pred HHHhCCCCc--ChhHHHHhhhhhhcC--CChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000159 156 LSEFGAKII--PPKRILKMLPELFDH--QDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (2013)
Q Consensus 156 l~~fG~~~i--~~k~il~~l~~ll~~--~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (2013)
....+.... ....+++.+...+.+ .+..||..|...+..++.+.... . . .......+
T Consensus 157 ~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~-----~-~--~~~~~~~~----------- 217 (458)
T d1ibrb_ 157 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-----F-D--KESERHFI----------- 217 (458)
T ss_dssp HHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH-----H-T--SHHHHHHH-----------
T ss_pred HhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh-----h-h--hHHHHHHh-----------
Confidence 776655433 245688888888864 45778988877766665443211 0 0 00000000
Q ss_pred CCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHH
Q 000159 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK 311 (2013)
Q Consensus 232 ~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~ 311 (2013)
. ..+...+.+.+|+.|..+++.|..
T Consensus 218 ------------------------------------------------------~-~~l~~~~~~~~~~~~~~~~~~l~~ 242 (458)
T d1ibrb_ 218 ------------------------------------------------------M-QVVCEATQCPDTRVRVAALQNLVK 242 (458)
T ss_dssp ------------------------------------------------------H-HHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------H-hhHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 122233455678888999999988
Q ss_pred Hhc-CCCCCCCChHH-HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc---------------------chhhhHhHH
Q 000159 312 LAS-TKRIAPGDFTE-VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH---------------------FSGSSRFLL 368 (2013)
Q Consensus 312 l~~-~pki~~~~~~~-l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~---------------------f~~~~~~ll 368 (2013)
++. .++.....+.+ +...+...+.+.+..++..|+.++..++...... +..+...++
T Consensus 243 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (458)
T d1ibrb_ 243 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 322 (458)
T ss_dssp HHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 874 34332222222 3344455566778888999999998887643211 123455666
Q ss_pred HHHHHHhc-------cCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000159 369 PVLLEKLK-------EKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (2013)
Q Consensus 369 p~LL~klk-------dkk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (2013)
|.+.+.+. +....++.++..++..++.. +..-++.+++.+...+++.+|.+|..++..|..+.+.+.+..+.
T Consensus 323 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~ 402 (458)
T d1ibrb_ 323 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 402 (458)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTC
T ss_pred hhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHH
Confidence 66666653 33345899999999999876 22225667778888889999999999999888776555444455
Q ss_pred HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
.+++.++|.+..+++|+++.||.+|..+++.+...+++.
T Consensus 403 ~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~ 441 (458)
T d1ibrb_ 403 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441 (458)
T ss_dssp TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 678999999999999999999999999999999998864
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=9.2e-06 Score=98.96 Aligned_cols=374 Identities=11% Similarity=0.097 Sum_probs=225.5
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc--c-----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--D-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~--~-----~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~ 676 (2013)
+++++.|.|.|-..+..|+..+.+.+...... + ...+.++++|. +..+..|+..++.+|..++.....
T Consensus 16 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~~v~~~a~~~L~~la~~~~~ 90 (434)
T d1q1sc_ 16 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 90 (434)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTT-----CGGGHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHc-----cCCCHHHHHHHHHHHHHHhcCChh
Confidence 56788999999999999999999887542221 1 12345555542 234567888888888887743111
Q ss_pred Cchhh-HHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhC--hh-----HHHHHHHHHhhhCCChhH----HHHHHHHH
Q 000159 677 FPKKC-VVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PG-----FIFERLYKIMKDHKNPKV----LSEGILWM 742 (2013)
Q Consensus 677 ~~~~~-~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~--~~-----~Vl~~L~~~l~~~KnpKv----~~~~l~~L 742 (2013)
..... -..+++.++..+.+ ..++..+..+|..++.... -. ..+..++..+........ ...++..+
T Consensus 91 ~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l 170 (434)
T d1q1sc_ 91 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 170 (434)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred hhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHH
Confidence 11111 12357777777765 4678888888888875321 11 123344444322222211 12222223
Q ss_pred HHHHHHhCCC-CC-ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCC
Q 000159 743 VSAVEDFGVS-HL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (2013)
Q Consensus 743 ~~li~~fG~~-~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~ 820 (2013)
..+....... .. ....+++.+..+ +.+.++.+|..|..++..+..... ... .. +..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~-~~~-----------~~----~~~----- 228 (434)
T d1q1sc_ 171 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPN-ERI-----------EM----VVK----- 228 (434)
T ss_dssp HHHTCCCTTCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSCH-HHH-----------HH----HHT-----
T ss_pred HHHhhcccccchhhhhhhHHHHHHHH-HhccccchhhhHHhhhcccchhhh-hhH-----------HH----Hhh-----
Confidence 3222111110 11 134577888787 999999999999888876642211 000 00 000
Q ss_pred CCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHH
Q 000159 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 899 (2013)
Q Consensus 821 ~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-~~eL~~~ 899 (2013)
..+.+.+.+.+.+.++..+..++..+..++... ....... -..++..
T Consensus 229 -------------------------------~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~-~~~~~~~~~~~~~~~ 276 (434)
T d1q1sc_ 229 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 276 (434)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------cccchhcccccccchhhhhhchhhhhhhHHhhh-hHHHHHHHhccccch
Confidence 002346777788889999999999988876421 1111100 1234566
Q ss_pred HHhcccchhHHHHHHHHHHHHHHHHHhChhhHh-hh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch-------
Q 000159 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD------- 970 (2013)
Q Consensus 900 L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~-~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~------- 970 (2013)
|...+.+.+..|+..++.++..++..- ..... .. ..+++.++..+.+....++..|..++..++...+.+
T Consensus 277 l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~ 355 (434)
T d1q1sc_ 277 FPSLLTNPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355 (434)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHhhcccchhhhHHHHHHHhhhcccc-chhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 777888889999999999999887532 22222 22 347899999999999999999999999988776532
Q ss_pred -hhHHHHHHHHhcCCCChhhHHHHHHHHHHHhc---cCCCCCChhhh------HHHHHhhcCCCChHHHHHHHHHHHHH
Q 000159 971 -KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT---GLSGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 971 -~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~---~~~~~~~~~~l------l~pl~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
.+++.+...|.+. ++..+..++..+...+. ..+....+... +..|-...++.|.+||+.|.+.+..+
T Consensus 356 ~~~i~~L~~ll~~~--d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 356 CGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp TTCHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2366777777755 57778777766655443 22221112111 22233344889999999998887654
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=0.00084 Score=83.72 Aligned_cols=476 Identities=13% Similarity=0.084 Sum_probs=256.5
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhcchhhhHhHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHhcCCCh-
Q 000159 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKAGCLNL- 401 (2013)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~~~~~~llp~LL~klkd-kk~~V~~aa~~aL~ai~~~~~~~l- 401 (2013)
.++.|.+.++|.+..++..|+.++..|+.. .+..+-. ...+++.|++.+.. ....+++.+..+|..+..+ ....
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~-~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~~~ 95 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR-SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLL 95 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHT-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHH-hhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHH
Confidence 367788888888889999999999999853 2222211 24578999998866 4577888888888877543 1111
Q ss_pred ----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000159 402 ----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 402 ----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~G 477 (2013)
...++.|+..|++.++.++..++..|..+........-.-.-...+|.++..+++.+++++..+..++..+.. +
T Consensus 96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~ 173 (529)
T d1jdha_ 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--G 173 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--T
T ss_pred HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhh--h
Confidence 1246788888999999999999999988766544321111124578899999999999999999999987753 2
Q ss_pred chhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 000159 478 MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 557 (2013)
Q Consensus 478 e~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~ 557 (2013)
+.... ..+.+ .. +.
T Consensus 174 ~~~~~-----------~~~~~---~~-~~--------------------------------------------------- 187 (529)
T d1jdha_ 174 NQESK-----------LIILA---SG-GP--------------------------------------------------- 187 (529)
T ss_dssp CHHHH-----------HHHHH---TT-HH---------------------------------------------------
T ss_pred hhHHH-----------HHHHh---cc-cc---------------------------------------------------
Confidence 22110 01100 00 00
Q ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhc-CCCHHHHHHHHHHHHHHHHhccCc-
Q 000159 558 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK-SAVWKERLEAISSLRQQVEAVQNL- 635 (2013)
Q Consensus 558 ~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~-s~~Wk~Rl~ale~L~~~v~~~~~~- 635 (2013)
+.++..|. +.....+..+..-+...... .+.
T Consensus 188 ----------------------------------------------~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~ 220 (529)
T d1jdha_ 188 ----------------------------------------------QALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNK 220 (529)
T ss_dssp ----------------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHH
T ss_pred ----------------------------------------------hHHHHHHHhhhhHHHHHHHHHHHhhhhcc-cccc
Confidence 00000010 01111122222111111000 000
Q ss_pred -----chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc--ChhhhHHHHHHHHH
Q 000159 636 -----DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA--DIKTRAHAMKCLTT 708 (2013)
Q Consensus 636 -----~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg--D~K~r~~a~e~L~~ 708 (2013)
....+.+++. +.+.+..+...++.++..+....... .....+++.|+.-+. |..++..+..+|..
T Consensus 221 ~~~~~~g~~~~L~~l------l~~~~~~~~~~a~~~l~~ls~~~~~~--~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~ 292 (529)
T d1jdha_ 221 PAIVEAGGMQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp HHHHHTTHHHHHHTT------TTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhHHHH------hcccchhhhhhhhhHHHhccccccch--hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence 0012223322 34555667777777776665432211 122345677776554 45677777777777
Q ss_pred HHhhhCh-------hHHHHHHHHHhh-hCCChhHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCC-cHh
Q 000159 709 FSEAVGP-------GFIFERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSS-AAA 774 (2013)
Q Consensus 709 l~e~~~~-------~~Vl~~L~~~l~-~~KnpKv~~~~l~~L~~li~~fG~~~-----l~~k~li~~l~~~gL~~~-n~~ 774 (2013)
++..... ...+..++..+. ...++.++..++..|..+........ +.....++.+..+ +.+. +..
T Consensus 293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~l-l~~~~~~~ 371 (529)
T d1jdha_ 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWP 371 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT-TSTTCCHH
T ss_pred hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHH-HhccchHH
Confidence 6532111 112444444442 35677888778877776652111100 0011224445454 6554 456
Q ss_pred HHHHHHHHHHHHHHhhChhHHhhh--hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCccccc
Q 000159 775 TRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 852 (2013)
Q Consensus 775 VR~aA~~ll~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~ 852 (2013)
+..++..++..+... +.....+ .+..|.+.+.+......+.....-. ......+..
T Consensus 372 ~~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~--------------------~~~~~~~~~ 429 (529)
T d1jdha_ 372 LIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG--------------------GTQQQFVEG 429 (529)
T ss_dssp HHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-------------------------------CBTT
T ss_pred HHHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhh--------------------hhhHHhhcc
Confidence 788888888777543 2222222 3455666666655444332110000 000000000
Q ss_pred ccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHh
Q 000159 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (2013)
Q Consensus 853 ~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~ 932 (2013)
+. .+..+..+...+..+..+...+..-. -.+.++.|...|.+.+..++..|+.++..++. .++...
T Consensus 430 -~~----------~~~~~~~~~~al~~la~~~~~r~~~~-~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~ 495 (529)
T d1jdha_ 430 -VR----------MEEIVEGCTGALHILARDVHNRIVIR-GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAE 495 (529)
T ss_dssp -BC----------HHHHHHHHHHHHHHHTTSHHHHHHHH-HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SHHHHH
T ss_pred -cc----------hHHHHHHHHHHHHHHccCHHHHHHHH-HCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc--ChhhHH
Confidence 00 11222233333333221110000000 12346678888888888999999999888763 233222
Q ss_pred h--hhhHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000159 933 S--SKGVLSDILKCLGDNKKHMRECTLTVLDAW 963 (2013)
Q Consensus 933 ~--~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i 963 (2013)
. ....++.+++.+.++++.||..|..+|..+
T Consensus 496 ~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 496 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 2 223678899999999999999999988754
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.17 E-value=0.00012 Score=88.61 Aligned_cols=380 Identities=12% Similarity=0.076 Sum_probs=235.3
Q ss_pred CChhhhccCCChHHHHHHHHHHHHHhhccCCCCchHHHh--hhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhhhh
Q 000159 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRE--LGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRY 90 (2013)
Q Consensus 14 lpl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~--~~~~~~k~v~D-sN~~vqe~~leal~~~v~~~~~~~~~~ 90 (2013)
-++...+.|.+-..+.+|...+.+.+....++.-..+.+ ..+.+-+++.+ .|+.+|..++.+|..+...... ....
T Consensus 16 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~-~~~~ 94 (434)
T d1q1sc_ 16 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE-QTKA 94 (434)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHH-HHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChh-hhhH
Confidence 356778999999999999999998875422211112322 23444566654 4788999999998877543222 1222
Q ss_pred --HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-h------hhhHHHHHHHHhhcCChh-h----HHHHHHHHHHHH
Q 000159 91 --AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-A------VDVFLDVMEKAIKNKVAK-A----VVPAIDVMFQAL 156 (2013)
Q Consensus 91 --~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~-~------~~~v~~~L~~~~~~KnpK-v----~~~~l~~L~~~l 156 (2013)
-..+++.++.-.-+..+.+++.|..++..++.-. . ....++.|+..+.+.+.. . +..+...+..+.
T Consensus 95 i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 174 (434)
T d1q1sc_ 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 174 (434)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHT
T ss_pred hhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHh
Confidence 2346777877633357889999988887776431 1 123345566655544332 1 222222333222
Q ss_pred HHhCCCCc---ChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCC
Q 000159 157 SEFGAKII---PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARP 233 (2013)
Q Consensus 157 ~~fG~~~i---~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P 233 (2013)
.. ..... ....+++.+..++.+.|..||..+...+..+... .. . ....+ .
T Consensus 175 ~~-~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~--~~---~---------~~~~~----~-------- 227 (434)
T d1q1sc_ 175 RN-KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PN---E---------RIEMV----V-------- 227 (434)
T ss_dssp CC-CTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CH---H---------HHHHH----H--------
T ss_pred hc-ccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh--hh---h---------hHHHH----h--------
Confidence 11 11111 2356889999999999999999887665544311 10 0 00000 0
Q ss_pred CccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHh
Q 000159 234 TRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA 313 (2013)
Q Consensus 234 ~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~ 313 (2013)
. .+ + + +.+.+.+.+.++..+..++..|..++
T Consensus 228 ------------------~---~~-----------------------~---~--~~Lv~ll~~~~~~~~~~al~~l~~l~ 258 (434)
T d1q1sc_ 228 ------------------K---KG-----------------------V---V--PQLVKLLGATELPIVTPALRAIGNIV 258 (434)
T ss_dssp ------------------T---TT-----------------------C---H--HHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred ------------------h---cc-----------------------c---c--hhcccccccchhhhhhchhhhhhhHH
Confidence 0 00 0 1 24555567788888888888888876
Q ss_pred cCC-CCCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccCcHHHHHHHHHHH
Q 000159 314 STK-RIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTL 390 (2013)
Q Consensus 314 ~~p-ki~~~~~-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~V~~aa~~aL 390 (2013)
.+. .....-+ ..++..|.+.+.+.+..|...|+.++..|+..-....... -..++|.++..+.+....++..+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l 338 (434)
T d1q1sc_ 259 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI 338 (434)
T ss_dssp TSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHH
Confidence 421 1000000 1234456777888888999999999999886432222211 235789999999999999999999999
Q ss_pred HHHHHhcCCChH--------hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC----hhHHHHhhh--hHHHHHHHHhcC
Q 000159 391 QAMHKAGCLNLV--------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS----KAAVLKVHK--DYVPICMECLND 456 (2013)
Q Consensus 391 ~ai~~~~~~~l~--------~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~----~~~l~~~l~--~l~p~l~k~l~D 456 (2013)
..+..+ .+.+ .+++.|...++.+++.++..++..|..++.... ...+...+. .+++.+-.+.++
T Consensus 339 ~nl~~~--~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~ 416 (434)
T d1q1sc_ 339 TNYTSG--GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH 416 (434)
T ss_dssp HHHHHH--SCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTC
T ss_pred HHHHhc--CCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcC
Confidence 988876 2222 236778888899999999999998888775321 111221221 245567677889
Q ss_pred CCHHHHHHHHHHHHHH
Q 000159 457 GTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 457 s~~~VR~aA~~al~~l 472 (2013)
.+++||+.|.+.+..+
T Consensus 417 ~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 417 ENESVYKASLNLIEKY 432 (434)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999888654
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.08 E-value=0.00037 Score=86.50 Aligned_cols=379 Identities=10% Similarity=0.064 Sum_probs=240.5
Q ss_pred hhhccCCChHHHHHHHHHHHHHhhccCCCCchHHHh--hhhhhHhhhc-CCcHHHHHHHHHHHHHHHHHhchhhhhh--H
Q 000159 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRE--LGPLFKKTVA-DSNAPVQDKALDALIAYLKAADADAGRY--A 91 (2013)
Q Consensus 17 ~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~--~~~~~~k~v~-DsN~~vqe~~leal~~~v~~~~~~~~~~--~ 91 (2013)
...+.+.+-..++.|...+.+.+.....+.-..+.+ ..+.+-.++. +.|..+|..++.+|..+...... .... -
T Consensus 82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~-~~~~~~~ 160 (503)
T d1wa5b_ 82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVVD 160 (503)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHh
Confidence 345677788888999999888774322111111211 2333444554 67889999999888766533221 2211 1
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-h-h-----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC-
Q 000159 92 KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-A-V-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI- 163 (2013)
Q Consensus 92 ~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~-~-~-----~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~- 163 (2013)
..+++.++...-+....+++.|..++..++... . . ..+++.|...+.+.++.++..++.+|..+........
T Consensus 161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~ 240 (503)
T d1wa5b_ 161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 240 (503)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchH
Confidence 235666666643467889999988888777432 1 1 2345667778888999998888888887765433311
Q ss_pred -cChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhh
Q 000159 164 -IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (2013)
Q Consensus 164 -i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (2013)
.....+++.+..++.+.|..++..+...+..+..+-.. .. ..+ ++
T Consensus 241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~-~~-~~~---------------~~----------------- 286 (503)
T d1wa5b_ 241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE-AI-QAV---------------ID----------------- 286 (503)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH-HH-HHH---------------HH-----------------
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCch-hh-hhh---------------hh-----------------
Confidence 12456899999999999999998876665544421100 00 000 00
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCC-
Q 000159 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG- 321 (2013)
Q Consensus 243 ~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~- 321 (2013)
.| +. +.+...+.+.++..+..++..|..++.+..-...
T Consensus 287 -----------~~-----------------------------~~-~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~ 325 (503)
T d1wa5b_ 287 -----------VR-----------------------------IP-KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQV 325 (503)
T ss_dssp -----------TT-----------------------------CH-HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred -----------hh-----------------------------hh-hhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHh
Confidence 00 01 2455556777888888888888887743210000
Q ss_pred -ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC
Q 000159 322 -DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (2013)
Q Consensus 322 -~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~ 399 (2013)
--..+++.|...+.+.+..++..++.+|..++.+-....... -..++|.++..+......|+..+..++..+..+++.
T Consensus 326 ~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~ 405 (503)
T d1wa5b_ 326 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ 405 (503)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT
T ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccc
Confidence 001356778888888888999999999999875432211111 246889999999999999999999999988876211
Q ss_pred Ch--------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh---------hHHHHhhh--hHHHHHHHHhcCCCHH
Q 000159 400 NL--------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK---------AAVLKVHK--DYVPICMECLNDGTPE 460 (2013)
Q Consensus 400 ~l--------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~---------~~l~~~l~--~l~p~l~k~l~Ds~~~ 460 (2013)
.. ..+++.++..++.+++.+...++..|..++..... ..+...+. ..+..+-.+.++.+.+
T Consensus 406 ~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~ 485 (503)
T d1wa5b_ 406 RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDK 485 (503)
T ss_dssp CTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHH
T ss_pred cHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 11 12456677888889999999999998887753211 00101111 1344566667889999
Q ss_pred HHHHHHHHHHH
Q 000159 461 VRDAAFSVLAA 471 (2013)
Q Consensus 461 VR~aA~~al~~ 471 (2013)
|++.|.+.+..
T Consensus 486 i~~~A~~il~~ 496 (503)
T d1wa5b_ 486 IYEKAYKIIET 496 (503)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887653
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.03 E-value=0.00041 Score=86.08 Aligned_cols=373 Identities=13% Similarity=0.124 Sum_probs=232.0
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCC-h--HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD-F--TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~-~--~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (2013)
.+...+.+.+-..+..|+..++++++...-.+-+ + ..+++.|...+. +.+..+...|+.+|..|+.+-.......
T Consensus 80 ~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~ 159 (503)
T d1wa5b_ 80 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVV 159 (503)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5777788899999999999999987532222210 1 234567777887 7788899999999999986543222222
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000159 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2013)
-..++|.++..+......+++.+..+|..+... +... ..+++.+...+.+.++.++..++..|..+.......
T Consensus 160 ~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~-~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~ 238 (503)
T d1wa5b_ 160 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 238 (503)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred hCCChHHHHHHhcCCChhHHHHHHHHHHHHhhh-hHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccc
Confidence 235788899999999999999999999888754 1111 124567778888888999888877777665432221
Q ss_pred HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000159 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517 (2013)
Q Consensus 438 ~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~ 517 (2013)
.-......++|.+.+++...+++++..+..++..+.. +... .+...++.
T Consensus 239 ~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~--~~~~--------------~~~~~~~~--------------- 287 (503)
T d1wa5b_ 239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD--GPQE--------------AIQAVIDV--------------- 287 (503)
T ss_dssp CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS--SCHH--------------HHHHHHHT---------------
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcc--CCch--------------hhhhhhhh---------------
Confidence 1112356789999999999999999988887765542 1110 01111100
Q ss_pred CCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHH
Q 000159 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR 597 (2013)
Q Consensus 518 ~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~ 597 (2013)
T Consensus 288 -------------------------------------------------------------------------------- 287 (503)
T d1wa5b_ 288 -------------------------------------------------------------------------------- 287 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc------hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHH
Q 000159 598 LGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 671 (2013)
Q Consensus 598 ~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~------~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~ 671 (2013)
-+.+.++..+.+.++..+..++..+..+....+... ...+.+..+ +...+..+...++-++..++
T Consensus 288 ---~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~l------l~~~~~~i~~~~~~~l~nl~ 358 (503)
T d1wa5b_ 288 ---RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL------LSSPKENIKKEACWTISNIT 358 (503)
T ss_dssp ---TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH------TTCSCHHHHHHHHHHHHHHT
T ss_pred ---hhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHH------hcCCCHHHHHHHHHHHHHHh
Confidence 011335566677777888888877776654321110 012223333 34455667777777777665
Q ss_pred HHcCCCchhhH-HHHHHHHHhhhc--ChhhhHHHHHHHHHHHhhhC--hh---H-----HHHHHHHHhhhCCChhHHHHH
Q 000159 672 ATATKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVG--PG---F-----IFERLYKIMKDHKNPKVLSEG 738 (2013)
Q Consensus 672 ~~~~~~~~~~~-~~il~~LveKlg--D~K~r~~a~e~L~~l~e~~~--~~---~-----Vl~~L~~~l~~~KnpKv~~~~ 738 (2013)
...+....... ..+++.+++.+. +.+++..+..+|..++.... .+ + ++..++..+ +.+++++...+
T Consensus 359 ~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L-~~~d~~~~~~~ 437 (503)
T d1wa5b_ 359 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVT 437 (503)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT-TTCCHHHHHHH
T ss_pred hccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHh-cCCCHHHHHHH
Confidence 32111111111 234566666654 45788888888888876432 11 1 234455554 67889999999
Q ss_pred HHHHHHHHHH-------hCCCCCC-hh------hHHHHHHhcCCCCCcHhHHHHHHHHHHH
Q 000159 739 ILWMVSAVED-------FGVSHLK-LK------DLIDFCKDTGLQSSAAATRNATIKLLGA 785 (2013)
Q Consensus 739 l~~L~~li~~-------fG~~~l~-~k------~li~~l~~~gL~~~n~~VR~aA~~ll~~ 785 (2013)
+..|..++.- .+.. .+ .. ..++.+..+ ..|.|..|++.|..++-.
T Consensus 438 L~~l~~ll~~~~~~~~~~~~~-~~~~~~~iee~g~~~~i~~L-q~~~~~~i~~~A~~il~~ 496 (503)
T d1wa5b_ 438 LDALENILKMGEADKEARGLN-INENADFIEKAGGMEKIFNC-QQNENDKIYEKAYKIIET 496 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS-SCHHHHHHHHTTHHHHHHGG-GGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccc-chHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHH
Confidence 9998887741 1111 11 11 234445555 678899999999887643
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=0.00036 Score=78.68 Aligned_cols=247 Identities=13% Similarity=0.052 Sum_probs=149.7
Q ss_pred HHHhhhcC--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHH-HH
Q 000159 688 GISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF-CK 764 (2013)
Q Consensus 688 ~LveKlgD--~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~-l~ 764 (2013)
.|++-|.| +.+|..|..+|..+ +.+.+++.++..+ +++++.||..++..|..+ +...-.....+.. +.
T Consensus 23 ~L~~~L~d~~~~vR~~A~~~L~~~----~~~~~~~~l~~~l-~d~~~~vr~~a~~aL~~l----~~~~~~~~~~~~~l~~ 93 (276)
T d1oyza_ 23 ELFRLLDDHNSLKRISSARVLQLR----GGQDAVRLAIEFC-SDKNYIRRDIGAFILGQI----KICKKCEDNVFNILNN 93 (276)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHH----CCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHS----CCCTTTHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhh----CCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----ccccccccchHHHHHH
Confidence 34444444 46777777777655 3345566666654 677888888877766543 2211111222222 23
Q ss_pred hcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCC
Q 000159 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844 (2013)
Q Consensus 765 ~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~ 844 (2013)
.+ +.+.++.||.+|...++.++......
T Consensus 94 ~~-l~d~~~~vr~~a~~aL~~~~~~~~~~--------------------------------------------------- 121 (276)
T d1oyza_ 94 MA-LNDKSACVRATAIESTAQRCKKNPIY--------------------------------------------------- 121 (276)
T ss_dssp HH-HHCSCHHHHHHHHHHHHHHHHHCGGG---------------------------------------------------
T ss_pred HH-hcCCChhHHHHHHHHHHHHccccchh---------------------------------------------------
Confidence 34 67778888888888777665321100
Q ss_pred CCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 000159 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS 924 (2013)
Q Consensus 845 lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~ 924 (2013)
...+.+.+...+.|.+|.+|..++..+..+-. ...+..+...+.+.+..+...+...++.+..
T Consensus 122 ------~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 184 (276)
T d1oyza_ 122 ------SPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKY 184 (276)
T ss_dssp ------HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC
T ss_pred ------hHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-----------HHHHHHHHHhcccccchhhhhHHHHHHhhhc
Confidence 00123345556677888888888766543221 2234455566677777777666554443221
Q ss_pred HhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccC
Q 000159 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (2013)
Q Consensus 925 alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~ 1004 (2013)
....+.+.++..+.+....+|..+..++.. .+....++.+...+.++ .+|..++..|.+. .
T Consensus 185 --------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~----~~~~~~~~~L~~~l~d~----~vr~~a~~aL~~i-g-- 245 (276)
T d1oyza_ 185 --------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSY----RKDKRVLSVLCDELKKN----TVYDDIIEAAGEL-G-- 245 (276)
T ss_dssp --------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH----TTCGGGHHHHHHHHTSS----SCCHHHHHHHHHH-C--
T ss_pred --------cccccchhhhhhhhhhhhhhhhhhccccch----hhhhhhHHHHHHHhCCh----HHHHHHHHHHHHc-C--
Confidence 123456677888899999999988777654 46677888888888754 4677777777643 1
Q ss_pred CCCCChhhhHHHHHhhcC-CCChHHHHHHHHHH
Q 000159 1005 SGFPDAAHLLKPASIAMT-DKSSDVRKAAEACI 1036 (2013)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~-D~~~dVR~aA~~~L 1036 (2013)
....++.+...|. +.+.+||.+|...|
T Consensus 246 -----~~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 246 -----DKTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp -----CGGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 1345555666664 46789999888765
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=0.0012 Score=74.16 Aligned_cols=256 Identities=18% Similarity=0.174 Sum_probs=155.3
Q ss_pred cCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh
Q 000159 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (2013)
Q Consensus 601 ~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~ 680 (2013)
.-.+.++..|.|.+...|..|+..|..+ +. ....+.+++++ +|++..|...++.+|..+. .. ..
T Consensus 19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~----~~-~~~~~~l~~~l------~d~~~~vr~~a~~aL~~l~----~~-~~ 82 (276)
T d1oyza_ 19 LNDDELFRLLDDHNSLKRISSARVLQLR----GG-QDAVRLAIEFC------SDKNYIRRDIGAFILGQIK----IC-KK 82 (276)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHH----CC-HHHHHHHHHHH------TCSSHHHHHHHHHHHHHSC----CC-TT
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhh----CC-HhHHHHHHHHH------cCCCHHHHHHHHHHHHHhc----cc-cc
Confidence 3446778888899999999998887643 11 12244555553 4666677766666554221 10 00
Q ss_pred hHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHH
Q 000159 681 CVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 760 (2013)
Q Consensus 681 ~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li 760 (2013)
. ...++..++..+..+.++.|+..++.+|..+...-. .....++
T Consensus 83 ~---------------------------------~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~~~~~ 126 (276)
T d1oyza_ 83 C---------------------------------EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP---IYSPKIV 126 (276)
T ss_dssp T---------------------------------HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG---GGHHHHH
T ss_pred c---------------------------------ccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccc---hhhHHHH
Confidence 0 112233334444568899999999999888765432 2235677
Q ss_pred HHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCC
Q 000159 761 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840 (2013)
Q Consensus 761 ~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~ 840 (2013)
+.+... +.+.++.||.+|...++.+. ..
T Consensus 127 ~~l~~~-~~d~~~~vr~~a~~~l~~~~----~~----------------------------------------------- 154 (276)
T d1oyza_ 127 EQSQIT-AFDKSTNVRRATAFAISVIN----DK----------------------------------------------- 154 (276)
T ss_dssp HHHHHH-TTCSCHHHHHHHHHHHHTC------------------------------------------------------
T ss_pred HHHHHH-hcCcchHHHHHHHHHHhhcc----hH-----------------------------------------------
Confidence 888877 89999999998876654221 00
Q ss_pred CCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHH
Q 000159 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLG 920 (2013)
Q Consensus 841 ~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~ 920 (2013)
...+.+...+.+.+|..|..+...+..+.. . .......+...+.|.+..++..++..++
T Consensus 155 ------------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~al~ 213 (276)
T d1oyza_ 155 ------------ATIPLLINLLKDPNGDVRNWAAFAININKY--------D-NSDIRDCFVEMLQDKNEEVRIEAIIGLS 213 (276)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC--------C-CHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHhcccccchhhhhHHHHHHhhhc--------c-ccccchhhhhhhhhhhhhhhhhhccccc
Confidence 011234455566777777766554443211 1 2455556666677888877777666654
Q ss_pred HHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000159 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (2013)
Q Consensus 921 ~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~ 998 (2013)
.+ | ....+|.+++.+.|. .||..+..+|..+ |-+..+|.+...|.+.+ +..+|..+++-|.
T Consensus 214 ~~----~------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i----g~~~~~~~L~~~l~~~~-d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 214 YR----K------DKRVLSVLCDELKKN--TVYDDIIEAAGEL----GDKTLLPVLDTMLYKFD-DNEIITSAIDKLK 274 (276)
T ss_dssp HT----T------CGGGHHHHHHHHTSS--SCCHHHHHHHHHH----CCGGGHHHHHHHHTTSS-CCHHHHHHHHHHT
T ss_pred hh----h------hhhhHHHHHHHhCCh--HHHHHHHHHHHHc----CCHHHHHHHHHHHccCC-CHHHHHHHHHHHc
Confidence 32 1 134567777777764 3777777777654 44567777777776543 4567777776553
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.0026 Score=79.10 Aligned_cols=184 Identities=8% Similarity=0.003 Sum_probs=127.9
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~--~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (2013)
.+.+.+.+.+=..|..|+..|..++....... ...++++..|.+.+. ..+..+...|+.+|..|+..-...-.-.-.
T Consensus 21 ~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 100 (529)
T d1jdha_ 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS 100 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHC
Confidence 57778889999999999999999874321100 123567888888887 456788899999998886422111011112
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2013)
..+|.|+..+++..+.++..+..+|..++.. .... ...++.+..-+++.++.++..++..|..+.........
T Consensus 101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 179 (529)
T d1jdha_ 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcc-cchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHH
Confidence 5689999999999999999999999988765 2221 23567888889999999999999988876543222111
Q ss_pred HHhhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Q 000159 440 LKVHKDYVPICMECLN-DGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 440 ~~~l~~l~p~l~k~l~-Ds~~~VR~aA~~al~~l~ 473 (2013)
.-.-...++.+..++. .....++..+..++..+.
T Consensus 180 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls 214 (529)
T d1jdha_ 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred HHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 1112335667777774 455688888888887654
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=5.6e-05 Score=86.17 Aligned_cols=187 Identities=12% Similarity=0.053 Sum_probs=132.5
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcch-hhhH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSR 365 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~--~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~ 365 (2013)
.......+.++.+|..|++.|..++...... -...+.+...+...+.+.+..|+..|+.+|+.++..-...-. -.-.
T Consensus 21 ~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~ 100 (264)
T d1xqra1 21 TAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL 100 (264)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444456788899999999999987421100 001233444455667788999999999999999964322111 1123
Q ss_pred hHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000159 366 FLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (2013)
Q Consensus 366 ~llp~LL~klk-dkk~~V~~aa~~aL~ai~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (2013)
..+|.|+..+. +..+.++..+..||..++.+ .... ...++.+...+++.++.++..++..|..++...+...
T Consensus 101 ~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 179 (264)
T d1xqra1 101 GALRKLLRLLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 179 (264)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CchHHHHHHhhcCCCHHHHHHHHHHHHHHhcc-chhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHH
Confidence 67899999884 67788999999999999865 1111 2246778888999999999999999988776544321
Q ss_pred HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000159 439 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (2013)
Q Consensus 439 l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~ 476 (2013)
-.-.-...+|.++..+.+.+++||..|..+|+.+....
T Consensus 180 ~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 180 GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 11111347899999999999999999999998886443
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=0.16 Score=66.79 Aligned_cols=302 Identities=10% Similarity=0.101 Sum_probs=168.3
Q ss_pred hhhhHHHHHHHHHHHhhhC---------------hhHHHHHHHHHhh--hCCChhHHHHHHHHHHHHHHHhCCCCCChhh
Q 000159 696 IKTRAHAMKCLTTFSEAVG---------------PGFIFERLYKIMK--DHKNPKVLSEGILWMVSAVEDFGVSHLKLKD 758 (2013)
Q Consensus 696 ~K~r~~a~e~L~~l~e~~~---------------~~~Vl~~L~~~l~--~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~ 758 (2013)
.+.++.+..++..+....+ .+++.+.+...+. ....+-+|..++..+++....... -....
T Consensus 419 ~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~--~~~~~ 496 (959)
T d1wa5c_ 419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--AQLIE 496 (959)
T ss_dssp HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--HHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccH--HHHHH
Confidence 3557777777776654211 1122233333332 223456676666666554432211 12456
Q ss_pred HHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh----hhccHHHHHHHHHHHhhCCCCCCCCCcccccCcccc
Q 000159 759 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL----ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (2013)
Q Consensus 759 li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L----~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~ 834 (2013)
++..+... +.+.+..||..|..++..+...........+ +.+.|.+...++
T Consensus 497 ~~~~l~~~-L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~------------------------ 551 (959)
T d1wa5c_ 497 LMPILATF-LQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLK------------------------ 551 (959)
T ss_dssp HHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHH------------------------
T ss_pred HHHHHHHH-hCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHH------------------------
Confidence 78888887 9999999999999988777644332110000 011111111111
Q ss_pred CCCCCCCCCCCCCcccccccchHHHHhcCCC--ChHH---HHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-----
Q 000159 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESP--DWKV---RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL----- 904 (2013)
Q Consensus 835 ~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~--~Wk~---R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL----- 904 (2013)
.++..+.+. .... +...++.+..++......+.|. ...++..|...+
T Consensus 552 ----------------------~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~-~~~i~~~l~~~~~~~~~ 608 (959)
T d1wa5c_ 552 ----------------------NLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPL-FPQLLAQFIEIVTIMAK 608 (959)
T ss_dssp ----------------------HHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGG-HHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 111111111 1111 1235666777776555566665 366666665544
Q ss_pred cchhHHHHHHHHHHHHHHHHHhChh-hHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----chhhHHHHHH
Q 000159 905 YDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----LDKMVPYVTT 978 (2013)
Q Consensus 905 ~DsN~~V~~~Al~~l~~La~alg~~-~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-----l~~ll~~l~~ 978 (2013)
++++.......+++++.+....++. +..+...++|.+...+..........+...+..+....+ +..+++.+..
T Consensus 609 ~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 688 (959)
T d1wa5c_ 609 NPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLA 688 (959)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTS
T ss_pred CccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhh
Confidence 3456778888999999999888765 567788899999998887777788888888888888764 2333333322
Q ss_pred H-HhcCCCChhhHHHHHHHHHHHhccCCC-CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000159 979 A-LTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2013)
Q Consensus 979 ~-L~~~k~~p~~R~~~l~~L~~~l~~~~~-~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2013)
. +... ...-..+...+..++...+. ......++..+..++.+... +..+...+..+...++.+.+.+++
T Consensus 689 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~ll~~ii~~~~~~~~~~~l 759 (959)
T d1wa5c_ 689 PNVWEL---KGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYI 759 (959)
T ss_dssp GGGGCC---TTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGH
T ss_pred HHHHHH---hhhHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHHCCCcc--hHHHHHHHHHHHHHCchhhhHhHH
Confidence 2 2211 12223333333333322111 12234455556667765443 467888888888888876655554
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.24 E-value=2.3e-05 Score=77.04 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=84.1
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh
Q 000159 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413 (2013)
Q Consensus 334 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~ 413 (2013)
|+|.|..|+..|+.+|+.+ + ...++.|++.+.|....||..+..+|..+ .-...++.|...++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~-------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~------~~~~~~~~L~~~l~ 63 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----G-------DEAFEPLLESLSNEDWRIRGAAAWIIGNF------QDERAVEPLIKLLE 63 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----S-------STTHHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh----C-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhc------chhhhHHHHHhhhc
Confidence 3566666777676666543 1 13467889999999999999887777533 33567888999999
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000159 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLA 470 (2013)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~ 470 (2013)
+.+|.||..++..|..+ +. +..++.+.++++|.++.||.+|..+|.
T Consensus 64 d~~~~VR~~a~~aL~~i----~~-------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 64 DDSGFVRSGAARSLEQI----GG-------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HCCTHHHHHHHHHHHHH----CS-------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred cchhHHHHHHHHHHHHh----Cc-------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999988764 11 445788889999999999999999874
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.17 E-value=0.83 Score=59.61 Aligned_cols=129 Identities=9% Similarity=0.096 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHh-hhc-----chhhhH-hHH
Q 000159 298 KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGL-RTH-----FSGSSR-FLL 368 (2013)
Q Consensus 298 kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L-~~~-----f~~~~~-~ll 368 (2013)
+=+.|+.|=+.|..+-+.| + ....|...+. +....++..|+-.+....+.- +.. +.+..+ .+-
T Consensus 16 ~~~~~k~Ae~~L~~~~~~p----~----f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik 87 (959)
T d1wa5c_ 16 IASTAKTSERNLRQLETQD----G----FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK 87 (959)
T ss_dssp SGGGHHHHHHHHHHHHTST----T----HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCC----C----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHH
Confidence 3347999999998887665 2 3334444554 334568888888887766542 221 222222 233
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000159 369 PVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (2013)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~ 434 (2013)
..++..+.+....+|..+..++..++.+ .....+++++.+...+++.++..+..++..|..+++..
T Consensus 88 ~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~ 154 (959)
T d1wa5c_ 88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (959)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 4455666678888999999999999886 23445789999999999999999999999998888654
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.03 E-value=9.9e-05 Score=72.24 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=85.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC
Q 000159 904 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA 983 (2013)
Q Consensus 904 L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~ 983 (2013)
|+|.|..|+..|+..++.+ |+ ..++.++..|.|.+..||..|..+|..+ +-...++.+...|.++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~~-------~~~~~L~~~l~d~~~~vR~~a~~~L~~~----~~~~~~~~L~~~l~d~ 65 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----GD-------EAFEPLLESLSNEDWRIRGAAAWIIGNF----QDERAVEPLIKLLEDD 65 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----SS-------TTHHHHHHGGGCSCHHHHHHHHHHHGGG----CSHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHh----CH-------HHHHHHHHHHcCCCHHHHHHHHHHHHhc----chhhhHHHHHhhhccc
Confidence 5688888888877776543 32 2357788999999999999999888643 4566788899999987
Q ss_pred CCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000159 984 KLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2013)
Q Consensus 984 k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~ 1037 (2013)
++.+|..++..|.+. . ....++.+...++|.+++||.+|..+|.
T Consensus 66 --~~~VR~~a~~aL~~i-~-------~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 66 --SGFVRSGAARSLEQI-G-------GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp --CTHHHHHHHHHHHHH-C-------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --hhHHHHHHHHHHHHh-C-------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 689999999988753 1 1455666888999999999999988774
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.00045 Score=78.35 Aligned_cols=174 Identities=11% Similarity=0.104 Sum_probs=121.0
Q ss_pred CChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh-hhhHHHHH
Q 000159 865 PDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDI 941 (2013)
Q Consensus 865 ~~Wk~R~eale~l~~il~~a~--~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~l 941 (2013)
.++..|..|++.|..++.... ..+. . .|-+...+...+++.+..|+..|+.+++.++..-...-... -...+|.+
T Consensus 29 ~~~~~~~~Al~~L~~L~~~~d~a~~l~-~-~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 29 ADQQEREGALELLADLCENMDNAADFC-Q-LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHH-H-TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHH-H-cCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 357889999999999885321 1111 1 24455556667888999999999999999995432111112 23578999
Q ss_pred HHHhC-CCcHHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCC-Ch--
Q 000159 942 LKCLG-DNKKHMRECTLTVLDAWLAAVHL-------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DA-- 1010 (2013)
Q Consensus 942 l~~L~-D~k~~Vr~aa~~aL~~i~~~~gl-------~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~-~~-- 1010 (2013)
+..|. +....+|..+..+|..++..... ...++.+...|.+. ++.++..++..+...+...+... .+
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 184 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCS 184 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC--chHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99995 67788999999999999866531 22467788888766 57788877777766554332211 11
Q ss_pred hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1011 ~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
...++.++..|.+.+++||..|..+|..+...
T Consensus 185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 22456688889999999999999999877543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.095 Score=61.41 Aligned_cols=388 Identities=9% Similarity=0.009 Sum_probs=190.0
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH--HHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhC
Q 000159 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV--LCLLGISERVAD--IKTRAHAMKCLTTFSEAVG 714 (2013)
Q Consensus 639 ~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~--~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~ 714 (2013)
.+.++.+|. .+|..|+..+..+|..+...... .+..+. -.+|.|+.-+.+ .++|..|..+|..++....
T Consensus 4 ip~lv~~L~------~~~~~~~~~a~~~l~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~ 76 (457)
T d1xm9a1 4 IPKAVQYLS------SQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp HHHHHHHHH------SSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 456777763 55677888889988887643222 122222 247888887765 4689999999988874221
Q ss_pred h--hH-----HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCCh-hhHHHHHHhc--------------CCCCCc
Q 000159 715 P--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL-KDLIDFCKDT--------------GLQSSA 772 (2013)
Q Consensus 715 ~--~~-----Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~-k~li~~l~~~--------------gL~~~n 772 (2013)
. .. .++.++..+....++.++..++..|..+........... ..+...+... .....+
T Consensus 77 ~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 156 (457)
T d1xm9a1 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhccccc
Confidence 1 11 255666666567889999999988888775332211000 1111111110 034557
Q ss_pred HhHHHHHHHHHHHHHHhhChhHHhhh--hhccHHHHHHHHHHHhhCCCCCCCCCc--ccccCcccc-CCCCCCCCCCCCC
Q 000159 773 AATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPK--KTVRASEST-SSVSSGGSDGLPR 847 (2013)
Q Consensus 773 ~~VR~aA~~ll~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p~p~--R~~r~~~~~-~s~~~~~~d~lpr 847 (2013)
+.|+..+..++..+...... ..... .++-+.+...+.....+.......... ......... ..........+..
T Consensus 157 ~~v~~~a~~~l~~~~~~~~~-~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 235 (457)
T d1xm9a1 157 PEVFFNATGCLRNLSSADAG-RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHH-HHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchH-HHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Confidence 88888888877665432111 11111 345567777777665554321100000 000000000 0000000000000
Q ss_pred cccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC-----ChhhHHHHHHhccc-chhHHHHHHHHHHHHH
Q 000159 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-----GTGELFGGLRGRLY-DSNKNLVMATLITLGA 921 (2013)
Q Consensus 848 ~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~-----~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~~ 921 (2013)
..............+....-..+.. .....+. .....+. ....++..|...+. ..+..+...++..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~ 310 (457)
T d1xm9a1 236 NARNAYTEKSSTGCFSNKSDKMMNN---NYDCPLP--EEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310 (457)
T ss_dssp TC-------------------------------CC--CCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHhhhhhhhhhHHHHHH---HHhhhhH--HhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 0000000000000000000000000 0000000 0000011 01345555555553 3345556666666666
Q ss_pred HHHHhChhhHh------hhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-----hhhHHHHHHHHhcC----CCC
Q 000159 922 VASAMGPAVEK------SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-----DKMVPYVTTALTDA----KLG 986 (2013)
Q Consensus 922 La~alg~~~~~------~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl-----~~ll~~l~~~L~~~----k~~ 986 (2013)
++..-...... .-...+|.++..+.+....++.++..++..+...... ...++.+...|... ..+
T Consensus 311 l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~ 390 (457)
T d1xm9a1 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp HTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTH
T ss_pred HhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCc
Confidence 55332221111 1124689999999999999999999999988755432 22345566666421 113
Q ss_pred hhhHHHHHHHHHHHhccCCCC-CCh--hhhHHHHHhhc-CCCChHHHHHHHHHHHHH
Q 000159 987 AEGRKDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAM-TDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 987 p~~R~~~l~~L~~~l~~~~~~-~~~--~~ll~pl~~~L-~D~~~dVR~aA~~~L~~l 1039 (2013)
++++..++..|.......+.. ..+ ...+++++..+ .+.+..|+++|..+|..+
T Consensus 391 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L 447 (457)
T d1xm9a1 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 567888888888765433211 011 23567788876 456789999999888765
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.13 Score=60.16 Aligned_cols=390 Identities=11% Similarity=0.000 Sum_probs=187.5
Q ss_pred hhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh--HHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--hh--
Q 000159 55 PLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VD-- 127 (2013)
Q Consensus 55 ~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~--~~~v~~~LveK~l~-~k~~~k~~A~~~ll~~~E~~~--~~-- 127 (2013)
+.+-+++.++|+.+|..|..+|..+....+. ..+. ....+|.|++- +. ..+.+|..|..++..++.... ..
T Consensus 5 p~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~-~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDL-LRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCcHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456788999999999999999887643322 2222 23467888865 65 689999999998888773211 11
Q ss_pred ---hHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhh----------------hhhhcCCChHHHHH
Q 000159 128 ---VFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKML----------------PELFDHQDQNVRAS 187 (2013)
Q Consensus 128 ---~v~~~L~~~~~-~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l----------------~~ll~~~d~~VR~~ 187 (2013)
..++.|...+. ..++.++..++.+|..+.............-++.+ .....+.+..|+..
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 162 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence 23455666554 57788888888888877654333211111111111 12235668888888
Q ss_pred HHHHHHHHHHhhCCchhhHHHh--hhChHHHHHHHHHHHHhcCCCCCCCcc-chhhhhHhhhhhccccCCCCCCCCCCCC
Q 000159 188 SKGLTLELCRWIGKDPVKTILF--EKMRDTMKKELEVELVNVSGTARPTRK-IRAEQDKELGQELISEDVGPGPSEESTA 264 (2013)
Q Consensus 188 a~~l~~ely~~lG~~~l~~~l~--~~Lk~~q~keLe~~f~k~~~~~~P~R~-~rs~~~~~~~~ea~~~~~g~~~~~~~~~ 264 (2013)
+..++..+...-. -+.... ..+-+..+.-+................ ................ ....... .
T Consensus 163 a~~~l~~~~~~~~---~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~--~- 235 (457)
T d1xm9a1 163 ATGCLRNLSSADA---GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVP-TRYRQLE--Y- 235 (457)
T ss_dssp HHHHHHHHTTSHH---HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSC-CHHHHHH--H-
T ss_pred HHHHHHHHhcCch---HHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHH--h-
Confidence 7776655432211 111111 112233333333333322111000000 0000000000000000 0000000 0
Q ss_pred CCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc----CCCCCC-CChHHHHHHHHHHhc-ccC
Q 000159 265 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS----TKRIAP-GDFTEVCRTLKKLIT-DVN 338 (2013)
Q Consensus 265 ~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~----~pki~~-~~~~~l~~~L~k~l~-D~N 338 (2013)
...+......... .+ ....-.... ........ .+.... .....+++.|...+. ..+
T Consensus 236 ---~~~~~~~~~~~~~--------~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~ 297 (457)
T d1xm9a1 236 ---NARNAYTEKSSTG--------CF----SNKSDKMMN---NNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297 (457)
T ss_dssp ---TC-------------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred ---hhhhhhhHHHhhh--------hh----hhhhHHHHH---HHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccc
Confidence 0000000000000 00 000000000 00000000 000000 011234455555544 445
Q ss_pred HHHHHHHHHHHHHHHHHhhhcch------hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh----HhHHHHH
Q 000159 339 IAVAVEAIQAIGNLARGLRTHFS------GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL----VDVVEDV 408 (2013)
Q Consensus 339 ~~V~~~A~~~l~~La~~L~~~f~------~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l----~~il~~l 408 (2013)
..+...++.++..++........ -.-...+|.|++.+++....|+.++..++..+..+ ...- ...++.+
T Consensus 298 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~-~~~~~~i~~~~i~~l 376 (457)
T d1xm9a1 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGNQVFPEV 376 (457)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC-hhHHHHHHHhhHHHH
Confidence 55555566666665532221111 11134689999999999999999999999988754 1111 1234555
Q ss_pred HHHhh------cCChHHHHHHHHHHHHHHHhcChhHHHHhhh-hHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Q 000159 409 KTSVK------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECLN-DGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 409 ~~~l~------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~-~l~p~l~k~l~-Ds~~~VR~aA~~al~~l~ 473 (2013)
+..+. ..++.++..++.+|..+....+.. -..... ..++.|...+. +.++.|+++|..+|..++
T Consensus 377 i~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~ 448 (457)
T d1xm9a1 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 55554 234679999999999877554422 111222 35678888775 457899999999998774
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=93.94 E-value=0.015 Score=63.98 Aligned_cols=114 Identities=15% Similarity=0.100 Sum_probs=74.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
.|...+.|.+|.+|..+.+.+ . ...|...++|.+..|+..+.. .++.
T Consensus 118 ~L~~Ll~D~d~~VR~~aa~~~-----------~-------~~~L~~L~~D~d~~VR~~aA~-------~~~~-------- 164 (233)
T d1lrva_ 118 QLEQMAADRDYLVRAYVVQRI-----------P-------PGRLFRFMRDEDRQVRKLVAK-------RLPE-------- 164 (233)
T ss_dssp GGGGGTTCSSHHHHHHHHHHS-----------C-------GGGGGGTTTCSCHHHHHHHHH-------HSCG--------
T ss_pred HHHHHhcCCCHHHHHHHHhcc-----------c-------hhHHHHHhcCCCHHHHHHHHH-------hcCH--------
Confidence 344567889999998876531 1 122345568888888876553 3332
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHH
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (2013)
+.++..++|..+.||..+...| +. +.+...+.++ ++.+|..+...+ ...
T Consensus 165 --~~L~~l~~D~d~~VR~~aa~~L-------~~----~~L~~l~~D~--d~~VR~aaae~~----------------~~~ 213 (233)
T d1lrva_ 165 --ESLGLMTQDPEPEVRRIVASRL-------RG----DDLLELLHDP--DWTVRLAAVEHA----------------SLE 213 (233)
T ss_dssp --GGGGGSTTCSSHHHHHHHHHHC-------CG----GGGGGGGGCS--SHHHHHHHHHHS----------------CHH
T ss_pred --HHHHHHccCCCHHHHHHHHHhc-------Cc----HHHHHHHhCC--CHHHHHHHHHhc----------------cHH
Confidence 3456778899999998876544 32 2344455665 578888776321 123
Q ss_pred HHhhcCCCChHHHHHHHH
Q 000159 1017 ASIAMTDKSSDVRKAAEA 1034 (2013)
Q Consensus 1017 l~~~L~D~~~dVR~aA~~ 1034 (2013)
++..|.|.+++||.+|.+
T Consensus 214 ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 214 ALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHHCCCCCHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHH
Confidence 667789999999998864
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.55 Score=47.07 Aligned_cols=98 Identities=16% Similarity=0.266 Sum_probs=76.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.||. ++-.|.+++.. .+..-.+.+.+|++||...|.+++..|+.++..++..+|+.|... .+.|+.
T Consensus 21 l~~~dw~----~ileicD~I~~-----~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~ 91 (145)
T d1ujka_ 21 NKELDWA----SINGFCEQLNE-----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 91 (145)
T ss_dssp CSSCCHH----HHHHHHHHHTS-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHH
Confidence 4556894 55556666631 233347899999999999999999999999999999999999754 456888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000159 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
.+.+.+.+ ....|++-+...+..|.....
T Consensus 92 ~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp 126 (145)
T d1ujka_ 92 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 126 (145)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence 88887764 445799999999999998774
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.67 E-value=0.44 Score=47.87 Aligned_cols=99 Identities=17% Similarity=0.316 Sum_probs=76.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh--hhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (2013)
+.+.||. ++-.|.++++. .+..-.+.+.+|+++|++.|.+++..|+.++..++..+|..|...+ +.|+.
T Consensus 18 ~~~~dw~----~il~icD~I~~-----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~ 88 (145)
T d1dvpa1 18 RLEPDWP----SILLICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (145)
T ss_dssp CSSCCHH----HHHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCCCHH----HHHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHH
Confidence 4566895 55556666642 2333478999999999999999999999999999999999987543 45666
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000159 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
.+.+.+.. +...|++-+...+..|....+-
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (145)
T d1dvpa1 89 MFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (145)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 66665543 3567999999999999998753
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.49 E-value=0.81 Score=45.66 Aligned_cols=98 Identities=14% Similarity=0.273 Sum_probs=77.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+...||. ++-.|.+++.. .+..-.+.+.+|+++|+..|.+++..|+.++..++..+|+.|... .+.|+.
T Consensus 14 ~~~~dw~----~il~icD~I~~-----~~~~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~ 84 (143)
T d1mhqa_ 14 MSEQDWS----AIQNFCEQVNT-----DPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (143)
T ss_dssp CSSCCHH----HHHHHHHHHHH-----SSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHc-----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 4556894 55556666652 122236789999999999999999999999999999999999754 346777
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000159 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
.+++.+.+ ....|++-+...+..|.....
T Consensus 85 ~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~ 119 (143)
T d1mhqa_ 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (143)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 77777764 356799999999999998875
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.80 E-value=1 Score=45.38 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=81.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.||. ++-.+.++++. .+..-.+.+.+|+++|...|.+++..||.++..++..+|..|... .+.|+.
T Consensus 15 l~~~dw~----~ileicD~In~-----~~~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~ 85 (151)
T d1juqa_ 15 NRQEDWE----YIIGFCDQINK-----ELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 85 (151)
T ss_dssp CSSCCHH----HHHHHHHHHHH-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHhc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHH
Confidence 4567895 44446666652 122237899999999999999999999999999999999999765 356888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000159 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (2013)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~ 981 (2013)
.+.+.+.. ....|++-+...+..|....+-...+..+...|.
T Consensus 86 ~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~~~~~~~~~Y~~Lk 133 (151)
T d1juqa_ 86 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 133 (151)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 88887764 2456999999999999988753333333344443
|
| >d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Tom1 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.32 E-value=1.4 Score=44.26 Aligned_cols=98 Identities=19% Similarity=0.381 Sum_probs=70.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc-chhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~ll 938 (2013)
+...||.. +-.+.+++.. .+..-.+.+.+|++||. ..|.+++..||.++..+++.+|..|... .+.|+
T Consensus 25 l~~~dw~~----il~icD~In~-----~~~~~k~a~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh~evas~~Fl 95 (153)
T d1elka_ 25 LQSEDWAL----NMEICDIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 95 (153)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCcccHHH----HHHHHHHHhC-----CCcCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHH
Confidence 45568963 4446666642 12224789999999985 5699999999999999999999999653 34466
Q ss_pred HHHH-HHhC---CCcHHHHHHHHHHHHHHHHhcC
Q 000159 939 SDIL-KCLG---DNKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 939 p~ll-~~L~---D~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
-.++ ..+. +....|++-+...+..|.....
T Consensus 96 ~~ll~~~~~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (153)
T d1elka_ 96 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 129 (153)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 5543 2222 2345699999999999988764
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.50 E-value=0.54 Score=47.04 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=62.8
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHHhhhhhhcC------CChHHHHHHHHHHHHH
Q 000159 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLEL 195 (2013)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~~------~d~~VR~~a~~l~~el 195 (2013)
.+...+..|.+.+.|+||+++.-||..|-.++.+=|... +.-+.|+..|.+++.. .+..||+....++.+.
T Consensus 35 ~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~W 114 (143)
T d1mhqa_ 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (143)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 356678888899999999999999999999999877642 3447788999988863 5788999999998887
Q ss_pred HHhhCC
Q 000159 196 CRWIGK 201 (2013)
Q Consensus 196 y~~lG~ 201 (2013)
+.+...
T Consensus 115 a~~f~~ 120 (143)
T d1mhqa_ 115 TVWFPE 120 (143)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 776653
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.02 E-value=0.38 Score=48.32 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=62.7
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC---CcChhHHHHhhhhhhcCC-ChHHHHHHHHHHHHHHHhhC
Q 000159 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFDHQ-DQNVRASSKGLTLELCRWIG 200 (2013)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~---~i~~k~il~~l~~ll~~~-d~~VR~~a~~l~~ely~~lG 200 (2013)
.+..++..|.+.+.|+||+++.-||..|-.++.+=|.. .+.-+.++..|.+++... +..||+....++..-....+
T Consensus 39 ~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (145)
T d1dvpa1 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (145)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 36678888999999999999999999999999886653 233467888888887554 78999999999988887766
Q ss_pred C
Q 000159 201 K 201 (2013)
Q Consensus 201 ~ 201 (2013)
.
T Consensus 119 ~ 119 (145)
T d1dvpa1 119 S 119 (145)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=83.47 E-value=0.16 Score=55.43 Aligned_cols=113 Identities=18% Similarity=0.134 Sum_probs=76.0
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH
Q 000159 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 369 (2013)
+...+.+.+|..|..+...+ + ...|...++|.+..|+..++.. ++ .+
T Consensus 119 L~~Ll~D~d~~VR~~aa~~~------~----------~~~L~~L~~D~d~~VR~~aA~~-------~~----------~~ 165 (233)
T d1lrva_ 119 LEQMAADRDYLVRAYVVQRI------P----------PGRLFRFMRDEDRQVRKLVAKR-------LP----------EE 165 (233)
T ss_dssp GGGGTTCSSHHHHHHHHHHS------C----------GGGGGGTTTCSCHHHHHHHHHH-------SC----------GG
T ss_pred HHHHhcCCCHHHHHHHHhcc------c----------hhHHHHHhcCCCHHHHHHHHHh-------cC----------HH
Confidence 44457899999999987642 0 1234456678998888766542 22 13
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2013)
.++..++|..+.||..+...+ +. +.|...+++.+|.||..+..- .+ +.
T Consensus 166 ~L~~l~~D~d~~VR~~aa~~L---------~~----~~L~~l~~D~d~~VR~aaae~-------~~------------~~ 213 (233)
T d1lrva_ 166 SLGLMTQDPEPEVRRIVASRL---------RG----DDLLELLHDPDWTVRLAAVEH-------AS------------LE 213 (233)
T ss_dssp GGGGSTTCSSHHHHHHHHHHC---------CG----GGGGGGGGCSSHHHHHHHHHH-------SC------------HH
T ss_pred HHHHHccCCCHHHHHHHHHhc---------Cc----HHHHHHHhCCCHHHHHHHHHh-------cc------------HH
Confidence 455667899999998765432 11 234556789999999887531 11 23
Q ss_pred HHHHhcCCCHHHHHHHHH
Q 000159 450 CMECLNDGTPEVRDAAFS 467 (2013)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~ 467 (2013)
+.+.|.|.+++||.+|.+
T Consensus 214 ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 214 ALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHHCCCCCHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHH
Confidence 556789999999999875
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=80.94 E-value=12 Score=42.18 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=102.6
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhh----HHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHH
Q 000159 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGE----LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2013)
Q Consensus 865 ~~Wk~R~eale~l~~il~~a~~~I~~~~~~e----L~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (2013)
.++..|..++-.+..++..... -.+....+ +...|...+...+..-+..+|+.||.+. . ...++.
T Consensus 139 ~~~~l~~~a~La~gslv~~~c~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g----~------p~~i~~ 207 (336)
T d1lsha1 139 NRPILRKTAVLGYGSLVFRYCA-NTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG----Q------PNSIKK 207 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHT-TCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----C------GGGHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC----C------HhHHHH
Confidence 4788999999999999975211 11111133 3444444444444455566677766543 1 233444
Q ss_pred HHHHhCC-------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhh
Q 000159 941 ILKCLGD-------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013 (2013)
Q Consensus 941 ll~~L~D-------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~l 1013 (2013)
+...+.+ ....+|.+|+.+|..+..+. ...+.+.+...+.+...++++|..++..|.+. .|. ...
T Consensus 208 l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t------~P~-~~~ 279 (336)
T d1lsha1 208 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLNVAIKSELRIRSCIVFFES------KPS-VAL 279 (336)
T ss_dssp HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT------CCC-HHH
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc------CCC-HHH
Confidence 5444433 34579999999998875543 45667778888877666789999988887653 111 334
Q ss_pred HHHHHhhc-CCCChHHHHHHHHHHHHHHHHcChh
Q 000159 1014 LKPASIAM-TDKSSDVRKAAEACIVEILRAGGQE 1046 (2013)
Q Consensus 1014 l~pl~~~L-~D~~~dVR~aA~~~L~~l~~~~G~~ 1046 (2013)
+.-+...+ .|++..|+......|..+...-.++
T Consensus 280 l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~ 313 (336)
T d1lsha1 280 VSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE 313 (336)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcc
Confidence 44445444 7899999998888887776655543
|