Citrus Sinensis ID: 000166
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1974 | 2.2.26 [Sep-21-2011] | |||||||
| Q94FN2 | 1978 | Protein MOR1 OS=Arabidops | yes | no | 0.991 | 0.989 | 0.768 | 0.0 | |
| Q5N749 | 1997 | Protein MOR1 OS=Oryza sat | yes | no | 0.985 | 0.973 | 0.719 | 0.0 | |
| Q14008 | 2032 | Cytoskeleton-associated p | yes | no | 0.705 | 0.685 | 0.306 | 1e-176 | |
| A2AGT5 | 2032 | Cytoskeleton-associated p | yes | no | 0.710 | 0.689 | 0.298 | 1e-171 | |
| Q1ZXQ8 | 2013 | Centrosomal protein 224 O | yes | no | 0.509 | 0.499 | 0.262 | 1e-95 | |
| O94534 | 809 | Spindle pole body compone | yes | no | 0.254 | 0.621 | 0.283 | 7e-47 | |
| Q09933 | 882 | Phosphoprotein p93 OS=Sch | no | no | 0.241 | 0.539 | 0.247 | 1e-31 | |
| P46675 | 888 | Protein STU2 OS=Saccharom | yes | no | 0.325 | 0.724 | 0.251 | 6e-30 | |
| G5EEM5 | 1415 | Zygote defective protein | yes | no | 0.112 | 0.156 | 0.288 | 2e-17 | |
| Q2UCC9 | 1184 | Protein stu1 OS=Aspergill | no | no | 0.147 | 0.246 | 0.226 | 0.0002 |
| >sp|Q94FN2|MOR1_ARATH Protein MOR1 OS=Arabidopsis thaliana GN=MOR1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 3054 bits (7918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1528/1987 (76%), Positives = 1718/1987 (86%), Gaps = 29/1987 (1%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +A AS K G KKDGS + E SK E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK +K+ KS SNG K GNR SR +PTKG+ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1615
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1616 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1675
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1676 DLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1735
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT TIG
Sbjct: 1736 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIG 1795
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1796 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1855
Query: 1855 L---DNRIGGAIASKVLPPENPLSDQ-----RNERFGVAVTSGTLDAIRERMKSMQLAAA 1906
L I + V P NP SD R V +GTLDAIRERMK+MQLA++
Sbjct: 1856 LALPSPDIPSLSSLDVKPLMNPRSDLYTDDIRASNMNPGVMTGTLDAIRERMKNMQLASS 1915
Query: 1907 AGNPDPGNRPLINMNDNVNNGLSSQSRSSDRASVEN-PAQGSVLPMDEKALSGLQARMER 1965
+P ++PL+ NDN++ ++ QS + E VLPMDEKALSGLQARMER
Sbjct: 1916 ----EPVSKPLMPTNDNLS--MNQQSVPPSQMGQETVHTHPVVLPMDEKALSGLQARMER 1969
Query: 1966 LKSGTIE 1972
LK G++E
Sbjct: 1970 LKGGSLE 1976
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Microtubule-binding protein that is essential for cortical microtubules organization and function. Essential for maintaining the interphase cortical array and for correct morphogenesis. Promotes rapid growth and shrinkage of microtubules and suppresses the pausing of interphase microtubules. Regulates the structure and function of microtubule arrays during mitosis and cytokinesis. Probably not required for cellulose microfibrils alignment in roots. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5N749|MOR1_ORYSJ Protein MOR1 OS=Oryza sativa subsp. japonica GN=MOR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2866 bits (7429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1455/2023 (71%), Positives = 1699/2023 (83%), Gaps = 78/2023 (3%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE GPLFKKTV
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFKKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDAL+A+ +AADADA RYAKEVCDAI AKCLTGRPKTVEKAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALLAFQRAADADASRYAKEVCDAIVAKCLTGRPKTVEKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEA +VFL+ MEKA+KNKVAKAVVPAIDVMFQALSEFGAK++PPK+ILKMLPELFDH D
Sbjct: 123 ELEAAEVFLESMEKAVKNKVAKAVVPAIDVMFQALSEFGAKVVPPKKILKMLPELFDHPD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRASSKGLTLELCRWIGK+PVK ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASSKGLTLELCRWIGKEPVKAILFEKMRDTMKKELEAELANVSGIAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
+KEL +E++ E G SEE+ + P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 EKELEEEVVPEAAGTNNSEEAVPEAPMEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
R+DAVAELTKLASTK+IAPGDF E+CRTLKKLITDVN+AV+VEA QAIGNLA+GLRTHFS
Sbjct: 303 RRDAVAELTKLASTKKIAPGDFHEICRTLKKLITDVNLAVSVEATQAIGNLAKGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
G+SR LLPVLLEKLKEKKPT+ E+L+QTLQAMHK+GC+ L+DV+EDV+ +VKNKVPLVRS
Sbjct: 363 GNSRVLLPVLLEKLKEKKPTMTEALSQTLQAMHKSGCITLLDVIEDVRVAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
LTLNWV FCIETS+KA VLK+HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PL
Sbjct: 423 LTLNWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLS+MI GS D +GT +A +G + E +SS +R+SAASM
Sbjct: 483 ERSLEKLDDVRKKKLSDMI-GSASDTTSGTVAA--SNTGVGTSAREVMDSSSMRRSAASM 539
Query: 542 LSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAP--EDVEPSEMSLEEIESRL 598
LSGK+PV A PA+KK GP K +AKK G Q SK + AP EDVEPSEMSLEEIE +L
Sbjct: 540 LSGKKPVQAVPATKKSGPAKSATAKKTDGGPQ--SKASAAPVIEDVEPSEMSLEEIEEKL 597
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
S++ ++T+ QLKS VWKERLEAIS L+Q+VE++ LD+S E+LVRL+C +PGWSEKNVQ
Sbjct: 598 SSVVKSETISQLKSTVWKERLEAISMLKQEVESLTELDKSAELLVRLLCAVPGWSEKNVQ 657
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQVIEV Y+A+T +FPK+CVVLCLLGISERVADIKTR HAMKCLT F EAVGPGF+
Sbjct: 658 VQQQVIEVSTYIASTVNRFPKRCVVLCLLGISERVADIKTRGHAMKCLTAFCEAVGPGFV 717
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMVSAVEDFG+S+LKLKD IDFCKD GLQSSAAATRNA
Sbjct: 718 FERLYKIMKEHKNPKVLSEGILWMVSAVEDFGISNLKLKDTIDFCKDIGLQSSAAATRNA 777
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV-VPKKTVRASESTSSV 837
TIKL+G LHKFVGPDIKGFL+DVKPALLS LDAEYEKNPFEGT PK+TVRA+++ SS
Sbjct: 778 TIKLIGVLHKFVGPDIKGFLSDVKPALLSTLDAEYEKNPFEGTASAPKRTVRAADAVSSA 837
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSG SDGLPREDIS K TPTL+K+L SPDWK+RLESI+AV+KI+EEA+KRIQP GT ELF
Sbjct: 838 SSGTSDGLPREDISAKITPTLLKNLGSPDWKLRLESIDAVSKIVEEAHKRIQPTGTVELF 897
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
LR RLYDSNKNLVMATL T+G +ASAMGPAVEKSSKG+L+D+LKCLGDNKKHMRECTL
Sbjct: 898 TALRARLYDSNKNLVMATLSTIGGLASAMGPAVEKSSKGILADVLKCLGDNKKHMRECTL 957
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T LD W+AA LDKMVPY+T L D K G+EGRKDLFDWLSK + +S +A LLKP+
Sbjct: 958 TALDLWVAAAQLDKMVPYITVTLGDQKTGSEGRKDLFDWLSKHASNMSDPSEALPLLKPS 1017
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ ++ DKSS+VRKAAE+ + EIL+ GQ+ + KNLKD+ P LA++ ER+KL+ +
Sbjct: 1018 ASSLMDKSSEVRKAAESFMNEILKICGQDVVAKNLKDLPSPTLAIVAERLKLSTVHEGFS 1077
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
SM SK+ SK K N + ++A+S R IP + + +++S QD ++Q
Sbjct: 1078 DSVKMVTTSMSLPSKAGSKNNKHGPNDRGSNVSKAVSQRGIPARSSV--TMISSQD-SIQ 1134
Query: 1128 SQALLNVKDSNKEDRERMV-VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKK 1186
SQAL N+KDSNKE+RER V VR+FKFE+PR EQI EL+ ++ ++FRED+ RL ++DFK+
Sbjct: 1135 SQALFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKR 1194
Query: 1187 QVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEG 1246
Q+DG+E+LQKALPS RK++IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D+
Sbjct: 1195 QIDGIELLQKALPSSRKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQS 1254
Query: 1247 YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNR 1306
Y LTE+EAA+FLPCL+EKSGHNIEKVREKM EL KQ+VN YS K LPYILEGLRSKNNR
Sbjct: 1255 YMLTEAEAAIFLPCLMEKSGHNIEKVREKMGELIKQMVNIYSLPKLLPYILEGLRSKNNR 1314
Query: 1307 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
TRIECVD++G+ +DHHG E+SG LK+L VA+LTAERDGEIRKAALNTLAT YK LG+D+
Sbjct: 1315 TRIECVDIIGYFMDHHGTEVSGLLKNLPSVAALTAERDGEIRKAALNTLATAYKNLGDDV 1374
Query: 1367 WRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD-V 1425
WRYVGKL+DAQ+SMLDDRFKWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+ V
Sbjct: 1375 WRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGEAV 1434
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVS-GPTDWNEALDIISFGSPEQSVEGMK 1484
S+S++G + R N+G+S+ H ++PR +A+ + GP DW EALDI++ G PEQSVEGMK
Sbjct: 1435 SRSMAGSMISRENFGYSDAH----MVPRQMATATPGPADWREALDIVALGLPEQSVEGMK 1490
Query: 1485 VVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLM 1544
V+CHEL QA DPE SV+D+L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTLM
Sbjct: 1491 VICHELTQAV-DPESSVLDDLIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTLM 1549
Query: 1545 QTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRT 1604
QTFQ KRLA+AV+E TLD+LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNA+RT
Sbjct: 1550 QTFQIKRLAHAVKEGTLDNLITELLLWLLDERVPLMDDGSQLLKALNVLMLKILDNAERT 1609
Query: 1605 SSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDR 1664
SSFVVLINLLRPLDPSRWPSP ES A +NQ+FSDLVVKCLIKLTKVLQSTIY+VDLDR
Sbjct: 1610 SSFVVLINLLRPLDPSRWPSPTPPESLAVKNQKFSDLVVKCLIKLTKVLQSTIYEVDLDR 1669
Query: 1665 ILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQ 1724
ILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPID +PQ
Sbjct: 1670 ILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDAEPQ 1729
Query: 1725 PIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKK 1784
PIILAYIDLNL+TLAAARMLT +G GQTHWGD+ +NNP +T+S DAQLKQELAA+FKK
Sbjct: 1730 PIILAYIDLNLQTLAAARMLTPSGTMGQTHWGDAGSNNPNPSTHSTDAQLKQELAAVFKK 1789
Query: 1785 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS 1844
IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS
Sbjct: 1790 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSS 1849
Query: 1845 VPMAT-------------PPPA---ALDN----------------RIGGAIASKVLPPEN 1872
+P++T P P +++N R G I +++
Sbjct: 1850 LPLSTPPPIAPIPSPKFAPSPVHTKSINNKTDCNEDDAGGDTHPFRGQGEIDNRL----- 1904
Query: 1873 PLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGN-RPLINMNDNVNNGLSSQ 1931
++ + +R+ +SGTLDA+RERMKS+Q AA N D RPL +MN N +G
Sbjct: 1905 QTTNLQTDRYQ---SSGTLDALRERMKSIQAAAVGANFDGVQARPLPSMNGNTLHG---- 1957
Query: 1932 SRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1974
R + Q + PMDE+ALSGLQARMERLKSG++EPL
Sbjct: 1958 ---GTRLDADPQTQNIIPPMDERALSGLQARMERLKSGSMEPL 1997
|
Microtubule-associated protein that is essential for cortical microtubules organization and function. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q14008|CKAP5_HUMAN Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 622 bits (1603), Expect = e-176, Method: Compositional matrix adjust.
Identities = 463/1511 (30%), Positives = 761/1511 (50%), Gaps = 119/1511 (7%)
Query: 13 KLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKA 72
KLP + + HK WK R + + I D K + L KK V DSNA VQ K
Sbjct: 9 KLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKG 68
Query: 73 LDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLD 131
L+A + Y++ A AG+ EV + +K + K E + ++++E+E + +
Sbjct: 69 LEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQE 127
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGL 191
+ K + NK K +V I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K +
Sbjct: 128 ELLKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLI 187
Query: 192 TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELI 250
+E+ RWI +D ++ L + + KELE E V + +A RPTR +R++Q+ E E
Sbjct: 188 AVEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQ 245
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ +
Sbjct: 246 QSAGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALESVE 304
Query: 311 KLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369
L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F + ++P
Sbjct: 305 VLIKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVP 364
Query: 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT- 428
+LEK KEKKP V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 365 TILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIAR 422
Query: 429 ---FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482
C ++ ++LK P C ++ +ND PEVRDAAF L K VG + +
Sbjct: 423 SFRHCTASTLPKSLLK------PFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVN 476
Query: 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR---KSAA 539
+ +D ++ +K+ E S +V+ G + A + F ++AA
Sbjct: 477 PFLADVDKLKLDKIKE-------------CSEKVELIHGKKAGLAADKKEFKPLPGRTAA 523
Query: 540 SMLSGKR-----------PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDV 584
S +G + P+ APA+K GGP K A G+G T K E E V
Sbjct: 524 SGAAGDKDTKDISAPKPGPLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIV 583
Query: 585 EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644
EP E+S+E E + +++P + L S+ WKERL + ++ VE + + + LVR
Sbjct: 584 EP-ELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVR 642
Query: 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMK 704
++ PGW E N QV Q + ++ +A F K + L G+ +++ D+K +A +
Sbjct: 643 MLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGNNAKE 701
Query: 705 CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764
+T +EA + E++ + KNPK SE + W+ +A+++FG S L +K I K
Sbjct: 702 AMTAIAEACMLPWTAEQVVSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK 761
Query: 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 824
T L ++ A R A I LLG ++ +VGP ++ F D KPALLS +DAE+EK +G P
Sbjct: 762 -TALAATNPAVRTAAITLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEK--MQGQSPP 818
Query: 825 KKTVRASESTSSVSSGGSDG-------------LPREDISGKFTPTLVKSLESPDWKVRL 871
T S+ ++S + G DG LPR +IS K T LV + +WK+R
Sbjct: 819 APTRGISKHSTSGTDEGEDGDEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKIRK 878
Query: 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931
E ++ V I+ +A K IQP GEL L+GRL DSNK LV TL L +A AMGP ++
Sbjct: 879 EGLDEVAGIINDA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIK 936
Query: 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRK 991
+ K + I+ LGD+K ++R L ++AW + + + + K R+
Sbjct: 937 QHVKNLGIPIITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQ 996
Query: 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
+L WL+++L L P L P + + D++ DVRK A+ + + G E + K
Sbjct: 997 ELLGWLAEKLPTLRSTPTDLILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAK 1056
Query: 1051 ---NLKDIQGPALALILERIKLN-----------------GASQVSMGPTSK------SS 1084
LK + +LE+ K+N G++ P S SS
Sbjct: 1057 ATGKLKPTSKDQVLAMLEKAKVNMPAKPAPPTKATSKPMGGSAPAKFQPASAPAEDCISS 1116
Query: 1085 SKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER 1144
S PK G +SS+ +G + S S+++ +S + V + KE R +
Sbjct: 1117 STEPKPDPKKAKAPG---LSSKAKSAQGKKMPSKTSLKEDEDKSGPIFIVVPNGKEQRMK 1173
Query: 1145 ----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200
+ V ++ F PR E I++L+ M + L + +DF+ L ++ L S
Sbjct: 1174 DEKGLKVLKWNFTTPRDEYIEQLKTQMSSCVAKWLQDEMFHSDFQHHNKALAVMVDHLES 1233
Query: 1201 IRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPC 1260
++ +I LD++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+EA+ F+P
Sbjct: 1234 EKEGVIGCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPY 1293
Query: 1261 LVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLID 1320
LV K G + +R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++ +G L++
Sbjct: 1294 LVVKVGEPKDVIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLVE 1353
Query: 1321 HHGAEISGQL--KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQK 1378
+G + K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G L++
Sbjct: 1354 SYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDM 1413
Query: 1379 SMLDDRFKWKVREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQSGDVSQS 1428
SML++R K + K+ E KP A+ LR+ E+ S Q+ +S
Sbjct: 1414 SMLEERIKRSAKRPSAAPIKQVEEKPQRAQNISSNANMLRKGPAEDMSSKLNQARSMSGH 1473
Query: 1429 VSGPTLMRRNY 1439
++RR +
Sbjct: 1474 PEAAQMVRREF 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Homo sapiens (taxid: 9606) |
| >sp|A2AGT5|CKAP5_MOUSE Cytoskeleton-associated protein 5 OS=Mus musculus GN=Ckap5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 605 bits (1559), Expect = e-171, Method: Compositional matrix adjust.
Identities = 448/1501 (29%), Positives = 753/1501 (50%), Gaps = 99/1501 (6%)
Query: 13 KLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKA 72
KLP + + HK WK R + + I D K + L KK V DSNA VQ K
Sbjct: 9 KLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKG 68
Query: 73 LDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLD 131
L+A + Y++ A AG+ EV + +K + K E + +++VE+E + +
Sbjct: 69 LEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQE 127
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGL 191
+ K + NK K +V I+ + +ALSEFG+KII K I+K+LP+LF+ +D+ VR +K
Sbjct: 128 ELLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLF 187
Query: 192 TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELI 250
+E+ RW +D VK L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 188 AIEIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQ 245
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
G D P++D YEL+D V+IL+ L K F++ ++A KW ERK+A+ +
Sbjct: 246 QSAGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDKIEAKKWQERKEALEAVE 304
Query: 311 KLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369
L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F + ++P
Sbjct: 305 VLVKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVP 364
Query: 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT- 428
+LEK KEKKP V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 365 TILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIAR 422
Query: 429 ---FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482
C ++ ++LK P C ++ +ND PEVRDAAF L K VG + +
Sbjct: 423 SFRHCTSSTLPKSLLK------PFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKSVN 476
Query: 483 RSIEKLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK 536
+ +D ++ +++ E ++ G +AT ++ +P A+ + K
Sbjct: 477 PFLADVDKLKLDRIKECSEKVELVHGKKSGLATEKKESK------PLPGRAAASGAAGDK 530
Query: 537 SAASMLSGKRP--VSAAPASKKGGPVKPSAKK----DGSGKQETSKLTEAPEDVEPSEMS 590
+SG +P + P +K GGP K S + K E E VEP E+S
Sbjct: 531 DTKD-VSGPKPGPLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGLETKEIVEP-ELS 588
Query: 591 LEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP 650
+E E + +++P + L S+ WKERL + ++ VE ++ + + LV+++ P
Sbjct: 589 IEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMPCQALVKMLAKKP 648
Query: 651 GWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFS 710
GW E N QV Q + ++ +A F K + L G+ +++ D+K +A + +T +
Sbjct: 649 GWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIA 707
Query: 711 EAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS 770
EA + E++ + KNPK SE + W+ +A+++FG S L +K I K T L +
Sbjct: 708 EACMLPWTAEQVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKAFISNVK-TALAA 766
Query: 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830
+ A R + I LLG ++ +VGP ++ D KPALLS +DAE++K + P + + A
Sbjct: 767 TNPAVRTSAITLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGI-A 825
Query: 831 SESTSSVSSGGS------------DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878
STS+ G D LPR +IS K T LV + +WK+R E ++ V
Sbjct: 826 KHSTSATDEGEDGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNWKIRKEGLDEVA 885
Query: 879 KILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938
I+ EA K IQP GEL L+GRL DSNK LV TL L +A AMG + + K +
Sbjct: 886 GIINEA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGANIRQHVKNLG 943
Query: 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998
++ LGD+K ++R L ++AW + + + + K R++L WL+
Sbjct: 944 IPVITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLA 1003
Query: 999 KQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKD 1054
++L L P L P + + D++ DVRK A+ + + G E + K LK
Sbjct: 1004 EKLPTLRSTPTDLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKP 1063
Query: 1055 IQGPALALILERIKLNGASQVS---------MGPTSKSSSK-VPKSASNGVS-------- 1096
+ +LE+ K N S+ + MG ++ + ++ +P + VS
Sbjct: 1064 TSKDQVLAMLEKAKANMPSKPAAPAKAMSKPMGGSAPAKTQPIPAPVEDSVSSTIEAKPD 1123
Query: 1097 --KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER----MVVRRF 1150
K +SS+ +G + S ++++ +S + V + KE R R + V ++
Sbjct: 1124 LKKAKAPGVSSKAKSVQGKKVPSKTTLKEDDDKSGPIFIVVPNGKEQRMRDEKGLKVLKW 1183
Query: 1151 KFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLD 1210
F PR E I++L+ M + L + +DF+ L ++ L S + +I LD
Sbjct: 1184 NFTTPRDEYIEQLKTQMSTCVAKWLQDEMFHSDFQHHNKALAVMVDHLESEKDGVISCLD 1243
Query: 1211 ILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIE 1270
++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+EA+ F+P L+ K G +
Sbjct: 1244 LILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPYLILKVGEPKD 1303
Query: 1271 KVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQL 1330
+R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++ +G LI+ +G +
Sbjct: 1304 VIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLIESYGMNVCQPT 1363
Query: 1331 --KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWK 1388
K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G L++ SML++R K
Sbjct: 1364 PGKALKEIAIHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDMSMLEERIKRS 1423
Query: 1389 VREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRN 1438
+ K+ E KP + LR+ E+ S Q+ +S ++RR
Sbjct: 1424 AKRPSAAPVKQAEEKPQRTQNINSNANMLRKGPAEDMSSKLNQARSLSGHPEAAQMVRRE 1483
Query: 1439 Y 1439
+
Sbjct: 1484 F 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Mus musculus (taxid: 10090) |
| >sp|Q1ZXQ8|MTAA_DICDI Centrosomal protein 224 OS=Dictyostelium discoideum GN=mtaA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 281/1072 (26%), Positives = 525/1072 (48%), Gaps = 66/1072 (6%)
Query: 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
EDR+ HKNWK R +L + + E GP FKK +AD N Q++AL+ L
Sbjct: 12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPL 71
Query: 77 IAYLKAADADAGRYAKEVCDAIAAKCL-TGRPKTVEKAQAVFMLWVELEAVDVFLDVMEK 135
A++ D ++A + K + RP+ EK +L +E ++ + ++ + K
Sbjct: 72 SAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLK 130
Query: 136 AIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195
+ K ++ ++ + QAL FG K IP K ILK F+++D+ +R + L +E+
Sbjct: 131 GTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEI 190
Query: 196 CRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISEDV 254
RWIGK + ++ E + K L+ + + + A P + R+E K L S+ +
Sbjct: 191 YRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPAVPLKYTRSEAAKALANA--SKGI 247
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-TKLA 313
P +V EID Y L+ V+IL P S F+EG++A KW ER + + +L T L
Sbjct: 248 QAKP------EVVEEIDPYSLMTAVNIL-PKLTSEFYEGLQAKKWQERSEQMDKLVTILT 300
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373
+T +I DF+E+C+ LKK++ DVN+ + +A+ +IG LA LR F+ + + +LE
Sbjct: 301 NTPKIETADFSELCKALKKILADVNVMIVQKAVVSIGLLADSLRGGFTSYVKPFITPILE 360
Query: 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433
K KEKK +V +S+ T+ ++ ++L D+++++ ++++KVP ++ L ++ I
Sbjct: 361 KFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTATMQSKVPQIKQEVLVFICNSITN 419
Query: 434 SSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492
+ K A + KV K I ME LND +RD A AA+ +G R + + ++D ++
Sbjct: 420 TKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAFAALGGIIGERAMTPYLNQIDPIK 479
Query: 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552
K+ + + VAT + + + ++ SS S K+P +A
Sbjct: 480 AKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLPVSS----------SNKKPAAAT- 524
Query: 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL--GSLIPADTVGQL 610
S + + + P S ++I+++L ++ + + L
Sbjct: 525 -----------GNSKSSSTTTPTGRSSNSSPLPPPPSSSDDIKNKLIGAGIVNNEIIEGL 573
Query: 611 KSAVWKERLEAISSLRQQVEAV--QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 668
WK+RL+A+ + + V+ + +++ E +++L+C P E N QV + +
Sbjct: 574 GKTQWKDRLQAVDDILENVKGLTADSINGMSESIIQLLCDKPSLKESNFQVLSSIFSIFI 633
Query: 669 YLAATATKFP-KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
+ F ++C L E++ D+K + + + L + E++ P +F +Y+
Sbjct: 634 QCCKNDSNFTQQRCANSYLTTCIEKLTDVKLKEISSELLFSTGESITPHAVFTSIYQFTS 693
Query: 728 DHKNPKVLSEGILWMVSAVEDFGVSHL-----KLKDLIDFCKDTGLQSSAAATRNATIKL 782
+HKNPK++++ ++W+ A+++FG+ +LK L+D+ K L+S+ + + IKL
Sbjct: 694 NHKNPKIIADSLVWIQQAIDEFGIGCCSNGIQQLKPLLDYTKQC-LESTNPDVKKSAIKL 752
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842
L + +G + FL DVK + LD E++K + VP + + S
Sbjct: 753 LCTIKINIGATLTDFLGDVKKPTMEVLDREFQKIRDQKPPVPNRQWKGMPPPGSAPVQIE 812
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902
PR DIS K TP ++ +L +WK R ++++ + +I+ +AN++IQP G L L+
Sbjct: 813 --FPRVDISVKLTPAIITNLSDANWKTRSDALDEIERIIIDANRKIQPK-LGGLIPALKN 869
Query: 903 RLYDSNKNLVMATLITLGAVASAM-GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
RL D+N+ + TL +G ++ AM G + EK ++ ++ IL LGD+KK +R+ ++ ++
Sbjct: 870 RLTDNNQKCTITTLNIIGMLSQAMGGQSFEKHARLLIPGILLLLGDSKKPVRDAVISCMN 929
Query: 962 AWLAA-VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP---DAAHLLKPA 1017
+ + + D + + + A RK+ W +T + P + L K
Sbjct: 930 VIVQSDLGFDVFIGSLAAPMIQE--SAFTRKESLAWTIVNVTNMKAAPIPSEINTLAKGI 987
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ---GPALALILER 1066
+ DKS+++R A+ + + +K LK ++ P++ IL++
Sbjct: 988 ISCLQDKSAEIRSLADNLLSILCTQIPLIEFKKELKHVKPASQPSIQTILDK 1039
|
Involved in regulation of microtubule dynamics. Regulates the interaction of microtubules tips with the centrosome and cell cortex. Dictyostelium discoideum (taxid: 44689) |
| >sp|O94534|ALP14_SCHPO Spindle pole body component alp14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (484), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 161/568 (28%), Positives = 263/568 (46%), Gaps = 65/568 (11%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRI---RELGPLF 57
MS++++ ++ KLP E R++HK WKVR A + + D DN L+
Sbjct: 1 MSQDQE--EDYSKLPLESRIVHKVWKVRLSAYEECSKSFSLSADGSDNCFELWNNQSELW 58
Query: 58 KKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCD-AIAAKCLTG-RPKTVEKAQA 115
K + DSN Q+ A +AY + +D A+E+ +I+ KCLT R T E A
Sbjct: 59 KSVLTDSNVAAQEAGTAAFVAYCRFSDPSHLLKAREISVLSISEKCLTSPRAGTRENALE 118
Query: 116 VFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPE 175
ML VE ++ ++ + ++ + K + + + + +FGAK+IP K I+ +
Sbjct: 119 ALMLLVEADSAAPVIESIIPSLSARSPKVIASNVAAIASLVEQFGAKVIPSKMIIPHISN 178
Query: 176 LFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235
LF H D+NVR + LT+ + RW G DP+K +LF+ +R KELE + P +
Sbjct: 179 LFGHADKNVRKEASRLTVNIYRWTG-DPLKDLLFKDLRPVQTKELESLFAEL--PTEPPK 235
Query: 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEI-----------DEYELVDPVDILTP 284
+ R L S+ P+ E+ + P + D+++LV+ VD+L P
Sbjct: 236 QTRF---------LKSQQPTSEPNVETQVEEQPALENEESEPEPSDDQFDLVEEVDVL-P 285
Query: 285 LEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAV 343
+ ++KW +RK+A+ +L + S +I DF + L K ++ D NI V +
Sbjct: 286 NVDPNLETLMASSKWKDRKEALDKLLPVLSQPKIKDNDFFNLVAILTKSVSKDANIMVVI 345
Query: 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403
A I +A+GLR++FS + + LLE+ KEKK V ESL+ + A+ L+ D
Sbjct: 346 NAAHCIQAMAKGLRSNFSKYASTSINALLERSKEKKANVIESLSSAMDAVLATSSLD--D 403
Query: 404 VVEDVKTSVKNKVPLVRSLTLNWVT------------FCIETSSKAAVLKVHKDYVPICM 451
+ E + + NK P ++S + + F ++T +KA V V + P
Sbjct: 404 LAELIASFAGNKNPQIKSSCFSLFSRSFSNMTSLPSKFTVDTCAKACVPGVSDTFEP--- 460
Query: 452 ECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511
VR AA L + K VG R + + + LDD+R++K+ T T
Sbjct: 461 ---------VRSAAAEALGVLMKLVGERAINQYLSPLDDIRKSKIRSF-------YETAT 504
Query: 512 SSARVQTSGGSVPSVEASESSFVRKSAA 539
A+ T V + ES V S A
Sbjct: 505 VKAKAPTKKSKVKPSKQEESKVVVPSNA 532
|
Required for bipolar spindle formation and proper chromosome segregation. Has a role in connecting the kinetochores and the plus end of pole to chromosome microtubules. Also required for the activation of the spindle checkpoint pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q09933|DIS1_SCHPO Phosphoprotein p93 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dis1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 129/521 (24%), Positives = 233/521 (44%), Gaps = 45/521 (8%)
Query: 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIREL---GPLFKKTVADSNAPVQDKALDA 75
++ K+WKVR EA L + D D + L+K+ + DSN P Q+ A+ +
Sbjct: 13 QIFDKSWKVRFEAYESLLHALNRALDDSDVCFQPWIHDPALWKQGLCDSNVPTQEHAVKS 72
Query: 76 LIAYLKAADADAGRYAKE-VCDAIAAKCLTGRPKTVEKA--QAVFMLWVELEAVDVFLDV 132
L +L + AK V + KCL +++ A QA+ +L + +A+D L+
Sbjct: 73 LRCFLDKSRQKGVNSAKSFVVAPLLEKCLPSPRQSIRDASHQALLIL-AKSDALDYVLEG 131
Query: 133 MEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ A + K K V +I + L FG + P K++P LF D+N+R + L+
Sbjct: 132 LFSAARVKHPKQAVASIKELNSLLENFGIPALSPIPFYKLIPTLFAQSDKNIRQEASNLS 191
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV------------------------S 228
+ L W+G + KT +F +++ +LE NV S
Sbjct: 192 ITLYAWVG-NAFKTHVFPQLKQIQVSDLEASFQNVTSRTTTGGHISNSLNTQEVVLPSFS 250
Query: 229 GTARPTRKIRAEQDKELG--QELISEDVGPG-----PSEESTADVPPEIDEYELV---DP 278
A+P + ++ + Q S P PS+ S + + + + P
Sbjct: 251 SNAKPKPHLSSKSSSQGNTLQRSTSSFSTPNRKVSQPSDFSASPSRSIVSPAKNIVGSTP 310
Query: 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVN 338
VD+L+ L F + + KW +RK+A+ + + S GD++E+ R + K + D N
Sbjct: 311 VDVLSKLTPE-FHTALSSPKWKDRKEALESMVPVCSNPVYQEGDYSELLRVIAKSLKDAN 369
Query: 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398
+ V A + ++A+ LR F + +LP L ++ KE+K ++ SL A+ ++
Sbjct: 370 VVVVGVAALLLTHIAKALRKGFLPYTGIVLPSLFDRFKERKSSLVHSLLDAANAIFESCG 429
Query: 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458
LN D++++ +K+K P V++ TL W+ C++ + + +C+ +ND
Sbjct: 430 LN--DIMDETLEFLKHKNPQVKTETLRWLNRCLQLTDVCPPRASLETLCSLCVTLINDTF 487
Query: 459 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499
VR A +VLA + + L + I LD + K+ E+
Sbjct: 488 EPVRMATTNVLATLVQIFSQPVLSKYIVGLDPKKLPKILEL 528
|
Has a role in sister chromatid separation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P46675|STU2_YEAST Protein STU2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STU2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 190/754 (25%), Positives = 352/754 (46%), Gaps = 111/754 (14%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALC-DSITD-PKDNRIRELG---P 55
MS EE++ + LP E+RL +K WK R EA +L L +S+ D +D+ I+
Sbjct: 1 MSGEEEV--DYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPT 58
Query: 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVC------DAIAAKCLTG-RPK 108
LF + + DSN Q++A+ AL + + A + + + A + + K LT R
Sbjct: 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT 118
Query: 109 TVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI 163
T ++ + + L ++V++ + EK K+ K + A + +++ ++ FG
Sbjct: 119 TKTQSMSCILSLCGLDTSITQSVELVIPFFEK----KLPKLIAAAANCVYELMAAFGLTN 174
Query: 164 IPPK----RILKMLPELFDHQDQNVRASSKGLTLELCRWIGK--DPVKTILFEKMRDTMK 217
+ + +LK +P+L H D+NVR+ + L +E+ + G D ++ ILF+K++
Sbjct: 175 VNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQV 234
Query: 218 KELEVELVNVSGTARPTRKI----RAEQDKELGQE--------LISEDVGPGPSEES--- 262
K+L V ++ + + E +K+ QE ++S D G ++
Sbjct: 235 KDLHKLFAKVGDEPSSSKMLFEWEKRELEKKRSQEEEARKRKSILSNDEGEYQIDKDGDT 294
Query: 263 ----TADVPP-------EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-- 309
D+PP +ID + ++ IL L K F E + ++KW +R +A+ E
Sbjct: 295 LMGMETDMPPSKQQSGVQIDTFSMLPEETILDKLPK-DFQERITSSKWKDRVEALEEFWD 353
Query: 310 TKLASTKRI--APGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRT-HFSGSS- 364
+ L+ TK++ +++ + +I D NI A Q++ + L+T FS
Sbjct: 354 SVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 413
Query: 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLV 419
+ LL++ KEKKP+V E++ + L + K A D+++D+ +K+K P +
Sbjct: 414 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQI 473
Query: 420 R--SLTLNWVTFCIETSSKAAVLKVHKD-YVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476
R L + E + + + KD VPI ++ +ND P +R F A + K
Sbjct: 474 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 533
Query: 477 GMRPLERSIEKLDDVRRNKLSEMIAG-SGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
GM +++E LD+++R K+ E + +A+G++ + ++T+ + P E+ F+
Sbjct: 534 GMNTFVKTLEHLDNLKRKKIEETVKTLPNFSIASGSTHSTIETNKQTGP----MENKFLL 589
Query: 536 KSAASMLSGKRPVSAAP----ASKKGGPV-------KPS--AKKDGSGKQETSKLTEAPE 582
K +S+L KR V+++P K P+ KPS A + S TSK P+
Sbjct: 590 K-KSSVLPSKR-VASSPLRNDNKSKVNPIGSVASASKPSMVAANNKSRVLLTSKSLATPK 647
Query: 583 DV-----EPSEMSLEEIESRLGSLIPADTVGQLKSAVW-KER---LEAISSLRQ-QVEAV 632
+V + +E +EE + RL L Q +W KER LE +++ ++E +
Sbjct: 648 NVVANSTDKNEKLIEEYKYRLQKL-------QNDEMIWTKERQSLLEKMNNTENYKIEMI 700
Query: 633 QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666
+ + E L L +EKN+Q++ + I+V
Sbjct: 701 KENEMLREQLKEAQSKL---NEKNIQLRSKEIDV 731
|
May play a role in the attachment, organization, and/or dynamics of microtubule ends at the spindle pole body. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|G5EEM5|ZYG9_CAEEL Zygote defective protein 9 OS=Caenorhabditis elegans GN=zyg-9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 10/232 (4%)
Query: 269 EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL--ASTKRIAPGDFTEV 326
E D ++ +D D+L+ + GF +++ KW ERK+A+ L +L A+ K ++ +
Sbjct: 286 EADPWDFLDAFDVLSKM-PDGFDTNIESKKWQERKEALEGLLQLITANPKLDPKANYGAL 344
Query: 327 CRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAES 385
L+K++ D NI VA A I +A GLRT F + + P++ EK KEKKPT+ +
Sbjct: 345 VERLQKVLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDP 404
Query: 386 LTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFC-IETSSKAAVLKVHK 444
L + A+ NL V E V ++ P +++ T ++ C ++ +S+ K K
Sbjct: 405 LVACIDAV--VATTNLEAVGEIVLAALGKPNPSIKTQTDLFLQRCFMKLNSQTMPKKTLK 462
Query: 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496
+P ++ D EVR+A+++ + A+ +++G +P S++ L D+ + L
Sbjct: 463 TLIPSLIKHSGDSDSEVREASYAAMGAMMRAIGEKP---SLQLLADIASDNL 511
|
Plays a major role in organizing microtubules and spindle poles during mitosis and meiosis in one-cell stage embryos. Required for default nucleus positioning in oocytes. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q2UCC9|STU1_ASPOR Protein stu1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=stu1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 139/336 (41%), Gaps = 44/336 (13%)
Query: 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGL----RTHF-SGSSRFLLPVLLEKLKEKKP 380
+ +L+ IT + A+ G+ + L + H S +R PVLLE+L + K
Sbjct: 46 IFESLRLAITSHHAALYAAGFSTFGHFLKRLFIQDQAHIVSAYARHFCPVLLERLGDHKE 105
Query: 381 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440
V Q + A ++ V +V + KN P + +L W++ S +L
Sbjct: 106 RVRAQAAQIFTDLWPAASADVEHYVLEVALTGKN--PKAKETSLIWLS---NMSRNHGLL 160
Query: 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL--DDVRRNKLSE 498
+ YVP + CL D VR A S + + + R +++ +VR++ ++
Sbjct: 161 --FRSYVPSVVSCLEDADSFVRHTAKSTVVELFQGAPARAKADLTKEMTAQNVRQSIVNA 218
Query: 499 MIAGSGGDVATGTSSARVQTSGGSVPSVE------ASESSFVRKSAASMLSGK--RPVSA 550
+ A G + + T+ R + P + AS + V + A+++S RP
Sbjct: 219 VYANIGLEDHSSTARPRSRVEPRYTPCTDSHPLRSASRAEVVHQQPAAVVSSAPLRPSKE 278
Query: 551 APASKKGGPVK--PSAKKDGSGK-----------------QETSKLTEAPEDVEPSEMSL 591
A + P+K P + K G+ + +S+ EAP+ + +E S
Sbjct: 279 ATPMVEPEPIKSRPGSSKSDKGRTIAAAPEAEKAPHMETARPSSQDGEAPQPLH-AETS- 336
Query: 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627
+++E L PA G+ W+ R + I+SLR+
Sbjct: 337 KQVEDLFRVLSPA-FEGRESEDNWRHREKYITSLRR 371
|
Microtubule binding protein that promotes the stabilization of dynamic microtubules. Required for mitotic spindle formation. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1974 | ||||||
| 255587410 | 1992 | microtubule associated protein xmap215, | 0.982 | 0.973 | 0.828 | 0.0 | |
| 224061471 | 2036 | microtubule organization protein [Populu | 1.0 | 0.969 | 0.827 | 0.0 | |
| 224115548 | 2025 | microtubule organization protein [Populu | 1.0 | 0.974 | 0.826 | 0.0 | |
| 356533943 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.997 | 0.968 | 0.802 | 0.0 | |
| 356574625 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.997 | 0.968 | 0.803 | 0.0 | |
| 19912731 | 2029 | microtubule bundling polypeptide TMBP200 | 0.997 | 0.970 | 0.774 | 0.0 | |
| 449434204 | 2005 | PREDICTED: protein MOR1-like [Cucumis sa | 0.987 | 0.972 | 0.774 | 0.0 | |
| 297823359 | 1980 | hypothetical protein ARALYDRAFT_482523 [ | 0.992 | 0.989 | 0.774 | 0.0 | |
| 30686489 | 1978 | microtubule organization 1 protein [Arab | 0.991 | 0.989 | 0.768 | 0.0 | |
| 115440677 | 1997 | Os01g0816400 [Oryza sativa Japonica Grou | 0.985 | 0.973 | 0.719 | 0.0 |
| >gi|255587410|ref|XP_002534264.1| microtubule associated protein xmap215, putative [Ricinus communis] gi|223525620|gb|EEF28119.1| microtubule associated protein xmap215, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3388 bits (8785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1679/2027 (82%), Positives = 1797/2027 (88%), Gaps = 88/2027 (4%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAA CDSITDPKD R+RE GPLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAAFCDSITDPKDPRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQASFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAVDVFLD MEKAIKNKVAKAVVPAIDVMFQALSEFGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVDVFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE GPG SEE+ AD P EIDEYELVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEPEAVSEVAGPGQSEEAAADAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
S SSRFLLPVLLEKLKEKKP + ESL QTLQA+HK+GCL+LVD+VEDVKT+VKNKVPLVR
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALTESLAQTLQALHKSGCLSLVDIVEDVKTAVKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
SLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFS LAAIAKSVGMRP
Sbjct: 421 SLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSALAAIAKSVGMRP 480
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
LERS+EKLDDVRR KLSEMI GSGG+ + GTSSA VQ GSV S EASE SFVR+SAAS
Sbjct: 481 LERSLEKLDDVRRKKLSEMIGGSGGNASGGTSSATVQAVSGSVSSTEASEGSFVRRSAAS 540
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
MLSGK+P+ AAPA+KKGGP K K DG+G+ ETSK E PEDVEP+EMSLEEIESRL
Sbjct: 541 MLSGKKPLPAAPANKKGGPTKSGTNKKGDGAGRTETSKAIEPPEDVEPAEMSLEEIESRL 600
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
GSLI A+TV QLKS VWKERLEAISSL+QQVE +Q LDQSVEIL+RL+C +PGW+EKNVQ
Sbjct: 601 GSLIQAETVSQLKSTVWKERLEAISSLKQQVEGLQGLDQSVEILIRLLCAIPGWNEKNVQ 660
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQ+IEVI YLA+TATKFPKKCVVLCLLG SERVADIKTRAHAMKCLTTFS
Sbjct: 661 VQQQMIEVITYLASTATKFPKKCVVLCLLGTSERVADIKTRAHAMKCLTTFS-------- 712
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
VEDFGVS LKLKDLIDFCKD GLQSS AA+RNA
Sbjct: 713 ---------------------------VEDFGVSLLKLKDLIDFCKDIGLQSSVAASRNA 745
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSV 837
TIKLLGALHK+VGPDIKGFL+DVKPALLSALDAEY+KNPFEG + PKKTVRASES SSV
Sbjct: 746 TIKLLGALHKYVGPDIKGFLSDVKPALLSALDAEYDKNPFEGASAAPKKTVRASESMSSV 805
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
S+GG D LPRED+SGK TPTL+KS+ESPDWKVRLESIEAVNKI+EEANKRIQP GTGELF
Sbjct: 806 SAGGLDSLPREDVSGKVTPTLLKSMESPDWKVRLESIEAVNKIIEEANKRIQPTGTGELF 865
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
G LRGRLYDSNKNLVMATL T+G VASAMGPAVEKSSKG+L+DILKCLGDNKKHMREC L
Sbjct: 866 GALRGRLYDSNKNLVMATLTTIGGVASAMGPAVEKSSKGILADILKCLGDNKKHMRECAL 925
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T +D+WLAAVHLDKM+PY+ TAL DAKLGAEGRKDLFDWLS+QL+GLS F DA HLLKPA
Sbjct: 926 TTIDSWLAAVHLDKMIPYIATALIDAKLGAEGRKDLFDWLSRQLSGLSDFSDAVHLLKPA 985
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
AMTDKSSDVRKAAEACI E+LR GQET+EKNLKD+ GPALAL+LER+K GA Q
Sbjct: 986 GSAMTDKSSDVRKAAEACITEVLRVSGQETVEKNLKDLHGPALALVLERVKPYGAFQESF 1045
Query: 1075 -----VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQ 1129
+SMGPTSK+++KV KSA+NGV KH NR SSR IPTKG+R E +MSVQD AVQSQ
Sbjct: 1046 DSAKTISMGPTSKTNAKVGKSATNGVPKHANRITSSRAIPTKGSRSEPMMSVQDRAVQSQ 1105
Query: 1130 ALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVD 1189
ALLNVKDSNKEDRERMVVRRFKFE+ RIEQIQ+LENDMMKYFREDLHRRLLS DFKKQVD
Sbjct: 1106 ALLNVKDSNKEDRERMVVRRFKFEELRIEQIQDLENDMMKYFREDLHRRLLSADFKKQVD 1165
Query: 1190 GLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSL 1249
GLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD LRDE Y+L
Sbjct: 1166 GLEMLQKALPSIAKELIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDMLRDEAYTL 1225
Query: 1250 TESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRI 1309
TESEAA+FLPCL+EK GHNIEKVREKMRELTKQIV+ YSA+KT PYILEGLRSKNNRTRI
Sbjct: 1226 TESEAAIFLPCLIEKLGHNIEKVREKMRELTKQIVHAYSASKTFPYILEGLRSKNNRTRI 1285
Query: 1310 ECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369
E DLVGFLIDHH AEISGQLKSLQIVASLTAERDGE RKAALNTLATGYKILGEDIWRY
Sbjct: 1286 ESADLVGFLIDHHVAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYKILGEDIWRY 1345
Query: 1370 VGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSV 1429
VGKLTDAQKSMLDDRFKWKVREMEK+KEG+PG++RAALRRSVRENG D+AEQSG+VSQSV
Sbjct: 1346 VGKLTDAQKSMLDDRFKWKVREMEKRKEGRPGDSRAALRRSVRENGFDLAEQSGEVSQSV 1405
Query: 1430 SGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE 1489
SGPT +R+NY ELH++R IMP A+ SVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE
Sbjct: 1406 SGPTFLRKNYSPHELHMDRQIMPHAVTSVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE 1465
Query: 1490 LAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQN 1549
LAQAT DPEGS MDELVKDADRLVSCLA+KVAKTFDFSLTGASSRSCKYVLNTLMQTFQN
Sbjct: 1466 LAQATGDPEGSAMDELVKDADRLVSCLASKVAKTFDFSLTGASSRSCKYVLNTLMQTFQN 1525
Query: 1550 KRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV 1609
KRLA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV
Sbjct: 1526 KRLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV 1585
Query: 1610 LINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI 1669
LINLLRP+DPSRWPS AS+E+FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI
Sbjct: 1586 LINLLRPVDPSRWPSSASSETFAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI 1645
Query: 1670 HVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA 1729
H+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA
Sbjct: 1646 HIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA 1705
Query: 1730 YIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQ 1789
YIDLNLETLAAARMLTSTGP GQTHWGDSAANNP+SAT+SADAQLKQELAAIFKKIGDKQ
Sbjct: 1706 YIDLNLETLAAARMLTSTGPVGQTHWGDSAANNPSSATHSADAQLKQELAAIFKKIGDKQ 1765
Query: 1790 TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMAT 1849
TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS+PM+T
Sbjct: 1766 TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSLPMST 1825
Query: 1850 PPPAAL-----------------------------------------DNRIGGAIASKVL 1868
PPP+AL DNR I S+ L
Sbjct: 1826 PPPSALTASSPEYAPLSPVHTNSINDAKSMNTKSEPANFHLPPAYSEDNRTVNTITSRGL 1885
Query: 1869 PPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGL 1928
EN L+DQRNE+F VT+GTLDAIRERMKSMQLAAAAGNPD GNRPL +NDN++NGL
Sbjct: 1886 ISENSLADQRNEKFLSGVTTGTLDAIRERMKSMQLAAAAGNPDSGNRPLTIVNDNLSNGL 1945
Query: 1929 SSQ-SRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1974
S Q R+ D ENP QG VLPMDEKALSGLQARMERLKSG I+ L
Sbjct: 1946 SGQVPRAPDSVGFENPVQGGVLPMDEKALSGLQARMERLKSGAIDSL 1992
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061471|ref|XP_002300496.1| microtubule organization protein [Populus trichocarpa] gi|222847754|gb|EEE85301.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3383 bits (8772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1684/2036 (82%), Positives = 1817/2036 (89%), Gaps = 62/2036 (3%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKL WEDRLLHKNWKVRNEANIDLA+LCDSI+DPKD+R+RE PLF+KT
Sbjct: 1 MSEEEKLLKEAKKLAWEDRLLHKNWKVRNEANIDLASLCDSISDPKDSRLREFAPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAVDVFLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVDVFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVKGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE VG GPSEE A+ P EIDEY+LVDPVDIL PLEK+GFW+GVKATKWS
Sbjct: 241 QDKEPEPEGVSEVVGSGPSEEVAAEAPQEIDEYDLVDPVDILGPLEKAGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
SGSSRFLLPVLLEKLKEKKPT+ E+L QTLQAMH AGCLNL D++E VKT+VKNK
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTEALAQTLQAMHTAGCLNLADIIEGNLRDYVKTAVKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTLNWVTFCIETS+KA +LKVHKDYVPICMECLNDGTP+VRD+AFSVLAA+AKS
Sbjct: 421 VPLVRSLTLNWVTFCIETSNKAVILKVHKDYVPICMECLNDGTPDVRDSAFSVLAAVAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMIAGSG V SS VQ GS+ SVE SE SFV+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMIAGSGDGVPAVASSGPVQAVRGSMSSVETSEGSFVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVKP--SAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593
KSAASMLSGKRP AA A+KK P K S K DG+G+ E+S+ E PEDVEP+EMSLEE
Sbjct: 541 KSAASMLSGKRPAPAAAANKKAAPTKSGVSKKGDGAGRAESSRAIEPPEDVEPAEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IE+RLGSLI ADTV QLKSAVWKERLEAISS + QVE +QNLDQSVEIL+RL+C +PGW+
Sbjct: 601 IETRLGSLIQADTVSQLKSAVWKERLEAISSFKLQVEGLQNLDQSVEILIRLLCAIPGWN 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV
Sbjct: 661 EKNVQVQQQVIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGF+F+RLYKIMK+HKNPKVLSEGI+WMVSA++DFGVSHLKLKDLIDFCKDTGLQSS A
Sbjct: 721 GPGFVFDRLYKIMKEHKNPKVLSEGIIWMVSAIDDFGVSHLKLKDLIDFCKDTGLQSSVA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
A+RNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY+KNPFEG + PKKTVR SE
Sbjct: 781 ASRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYDKNPFEGASAAPKKTVRTSE 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
STSSVS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP G
Sbjct: 841 STSSVSGGGLDSLPREDISGKITPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPTG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRLYDSNKNL+M L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
RECTL LD+W+AAVHLDKMVPY+T AL + KLGAEGRKDLFDWLSKQL+G S F DA H
Sbjct: 961 RECTLNTLDSWVAAVHLDKMVPYITAALIETKLGAEGRKDLFDWLSKQLSGSSEFSDAIH 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKAAEACI EILR GQE IEKNLKDIQGPALAL+LER++ G
Sbjct: 1021 LLKPASSAMTDKSSDVRKAAEACISEILRVCGQEMIEKNLKDIQGPALALVLERVRPAGG 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q +SMGP+SK+S KV K+ASNG+SKH NR+IS+RVIP KG++PE MS
Sbjct: 1081 FQGLSFESFESTKTISMGPSSKTSVKVGKAASNGISKHANRSISARVIPMKGSKPEPTMS 1140
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
QD AVQSQALLNVKDSNKEDRERMVVRRFKFE+PR+EQ+Q+LE+DMMKYFREDL+RRLL
Sbjct: 1141 FQDRAVQSQALLNVKDSNKEDRERMVVRRFKFEEPRMEQVQDLESDMMKYFREDLNRRLL 1200
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEML KALPSI K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLP+LFD
Sbjct: 1201 SPDFKKQVDGLEMLHKALPSIGKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPDLFD 1260
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
LRDE Y+L+ESEAA+FLPCL+EK GHNIEKVREKMRELTKQIV YSA K+ PYILEGL
Sbjct: 1261 RLRDEAYTLSESEAAIFLPCLIEKLGHNIEKVREKMRELTKQIVQAYSAAKSFPYILEGL 1320
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYK
Sbjct: 1321 RSKNNRTRIECADLVGFLIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYK 1380
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWR++GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAE
Sbjct: 1381 ILGEDIWRFLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAE 1440
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++SQSVSGP + R+NYG ELH+E +MPRAL SV+GP DWNEALDIISFGSPEQSV
Sbjct: 1441 QSGELSQSVSGPIIARKNYGTQELHMEGHMMPRALVSVNGPADWNEALDIISFGSPEQSV 1500
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVL 1540
EGMKVVCHELAQATND EGS MDELVKDAD+LVSCLANKV++TFDFSLTGASSR+CKYVL
Sbjct: 1501 EGMKVVCHELAQATNDAEGSAMDELVKDADKLVSCLANKVSRTFDFSLTGASSRACKYVL 1560
Query: 1541 NTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN 1600
NTLMQTFQNK LAYAV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN
Sbjct: 1561 NTLMQTFQNKILAYAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN 1620
Query: 1601 ADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDV 1660
ADRTSSFVVLINLLRPLDP+RWPSPAS E+FA RNQ+FSDLVVKCLIKLTKVLQ+TIYDV
Sbjct: 1621 ADRTSSFVVLINLLRPLDPTRWPSPASAETFAIRNQKFSDLVVKCLIKLTKVLQTTIYDV 1680
Query: 1661 DLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID 1720
DLDRILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID
Sbjct: 1681 DLDRILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID 1740
Query: 1721 MKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAA 1780
MKPQPIILAYIDLNLETLAAARMLTST P GQ HWGDSAANN + A +SA+AQLKQELAA
Sbjct: 1741 MKPQPIILAYIDLNLETLAAARMLTSTAPVGQNHWGDSAANNSSPAAHSAEAQLKQELAA 1800
Query: 1781 IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGR 1840
IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKN AAGR
Sbjct: 1801 IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNTAAGR 1860
Query: 1841 TPSSVPMATPPPAAL-----------------------------------------DNRI 1859
TPSS+P++TPPP+AL DNR
Sbjct: 1861 TPSSLPISTPPPSALNVSSPDLQPLSPVHTNSLNDAKPLHVKPETTNFHLPPSYAEDNRA 1920
Query: 1860 GGAIASKVLPPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLIN 1919
A S+ L EN L DQRNE+ VTSGTLDAIRERMKSMQLAAA GNPD G+RPL++
Sbjct: 1921 VSAFLSRGLVSENSLGDQRNEKLIGGVTSGTLDAIRERMKSMQLAAATGNPDSGSRPLMS 1980
Query: 1920 MNDNVNNGLSSQS-RSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1974
MN+N+NNGLSSQ R+ D +ENP VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1981 MNENLNNGLSSQILRAPDSTGMENPLHSGVLPMDEKALSGLQARMERLKSGSLEPL 2036
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115548|ref|XP_002317062.1| microtubule organization protein [Populus trichocarpa] gi|222860127|gb|EEE97674.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3381 bits (8767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1674/2025 (82%), Positives = 1814/2025 (89%), Gaps = 51/2025 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLA+LC SI DPKD+R+RE PLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLASLCVSIFDPKDSRLREFAPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAV+ FLD MEKAIKNKV+KAVVPAIDVMFQALSEFGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVEAFLDAMEKAIKNKVSKAVVPAIDVMFQALSEFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+IL EKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILLEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE GPG SEE D P EIDEY+L+DPVDIL+PLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEPEGVSEVAGPGQSEEVAPDAPQEIDEYDLMDPVDILSPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR+HF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRSHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV--VEDVKTSVKNKVPL 418
SGSSRFLLPVLLEKLKEKKPT+ ESLTQTLQAMHKAGC NL D+ VE VKT+VKNKVPL
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTESLTQTLQAMHKAGCSNLADIFAVEYVKTAVKNKVPL 420
Query: 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
VRSLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFSVLAA+AK VGM
Sbjct: 421 VRSLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSVLAAVAKMVGM 480
Query: 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538
RPLERS+EKLDDVRR KLSEMIAGSG VA +S VQT+ GS+ SVE SESSFV+KSA
Sbjct: 481 RPLERSLEKLDDVRRKKLSEMIAGSGDGVAAVATSGTVQTARGSMSSVETSESSFVKKSA 540
Query: 539 ASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIES 596
ASMLSGK+P AAPA+KK P K A K DG+G+ ETS+ E PEDVEP+EMSLEEIE+
Sbjct: 541 ASMLSGKKPAPAAPANKKAAPTKSGASKKVDGAGRPETSRALEPPEDVEPAEMSLEEIET 600
Query: 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKN 656
RLGSLI ADT+ QLKSAVWKERLEAISSL++QVE +QN +QSVEIL+RL+C +PGW+EKN
Sbjct: 601 RLGSLIQADTISQLKSAVWKERLEAISSLKEQVEGLQNCNQSVEILIRLLCAIPGWNEKN 660
Query: 657 VQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG 716
VQVQQQ IEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRA+AMKCLTTF+EAVGPG
Sbjct: 661 VQVQQQFIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAYAMKCLTTFTEAVGPG 720
Query: 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
F+F+RLYKIMK+HKNPKVLSEGILWMV A++DFGVSHLKLKDLIDFCKDTGLQSS AA+R
Sbjct: 721 FVFDRLYKIMKEHKNPKVLSEGILWMVLAIDDFGVSHLKLKDLIDFCKDTGLQSSVAASR 780
Query: 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTS 835
NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG + +PKKTVR SES +
Sbjct: 781 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGASAIPKKTVRTSESMT 840
Query: 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895
VS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP GTGE
Sbjct: 841 CVSGGGLDSLPREDISGKVTPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPNGTGE 900
Query: 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955
LFG LRGRLYDSNKNL+M L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC
Sbjct: 901 LFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 960
Query: 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015
L LD+W+AAVHLDKM+PY+T AL ++KLGAEGRKDLFDWLSKQL+GLS FPDA HLLK
Sbjct: 961 ALNTLDSWVAAVHLDKMIPYITAALFESKLGAEGRKDLFDWLSKQLSGLSEFPDAIHLLK 1020
Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ- 1074
PA AMTDKS+DVRKAAEACI EILR GQE IE+NLKDI GPALAL+LER++ Q
Sbjct: 1021 PAGSAMTDKSADVRKAAEACISEILRVCGQEMIERNLKDIHGPALALVLERVRPASVYQE 1080
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
+SMGP+SK+SSKV K+ASNG+SKH NR+ISSRVIPTKG++PE MS+QD AVQ
Sbjct: 1081 SFESTKTISMGPSSKTSSKVGKAASNGISKHSNRSISSRVIPTKGSKPEPAMSIQDRAVQ 1140
Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
SQALLNVKDSNKEDRERMVVRRFKFE+PR+EQIQ+LE DMMKY REDL+RRLLS DFKKQ
Sbjct: 1141 SQALLNVKDSNKEDRERMVVRRFKFEEPRMEQIQDLEGDMMKYLREDLNRRLLSLDFKKQ 1200
Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
VDGLEMLQKALPSI +IIEVLDILL+WFVLQFCKSNTTCLLKVLEFLP LFD LRDE Y
Sbjct: 1201 VDGLEMLQKALPSIGNEIIEVLDILLKWFVLQFCKSNTTCLLKVLEFLPALFDLLRDEAY 1260
Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
+L+ESEAA+FLPCL+EK GHNIEKVREKMREL KQI++ YSATK+ PYILEGLRSKNNRT
Sbjct: 1261 TLSESEAAIFLPCLIEKLGHNIEKVREKMRELAKQILHAYSATKSFPYILEGLRSKNNRT 1320
Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
RIEC DLVGFLID HGAEISGQLKSLQIVASLTAERDGEIRKAALN LATGYKILGEDIW
Sbjct: 1321 RIECADLVGFLIDQHGAEISGQLKSLQIVASLTAERDGEIRKAALNALATGYKILGEDIW 1380
Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
RY+GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAEQSG+VSQ
Sbjct: 1381 RYLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAEQSGEVSQ 1440
Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
SVSGP L R+N+G EL VER IMPRAL S SGPTDWNEALDIISF SPEQSVEGMKVVC
Sbjct: 1441 SVSGPILARKNFGTQELQVERHIMPRALTSASGPTDWNEALDIISFSSPEQSVEGMKVVC 1500
Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
HELAQAT+D EGSVMDELVKDADRLVSCLANKVA+TFDFSLTGASSRSCKYVLNTLMQTF
Sbjct: 1501 HELAQATSDEEGSVMDELVKDADRLVSCLANKVARTFDFSLTGASSRSCKYVLNTLMQTF 1560
Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1607
QNK LA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF
Sbjct: 1561 QNKTLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1620
Query: 1608 VVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1667
VLINLLRPLDPSRWPSPAS E+FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRIL+
Sbjct: 1621 DVLINLLRPLDPSRWPSPASTETFAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILR 1680
Query: 1668 SIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPII 1727
SIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGA+IKGHLSMVPIDMKPQPII
Sbjct: 1681 SIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGASIKGHLSMVPIDMKPQPII 1740
Query: 1728 LAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGD 1787
LAYIDLNLETLAAARMLTST P GQ HWGDSAANN + AT+SA+AQLKQELAAIFKKIGD
Sbjct: 1741 LAYIDLNLETLAAARMLTSTAPVGQNHWGDSAANNSSPATHSAEAQLKQELAAIFKKIGD 1800
Query: 1788 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1847
KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKN AAGRTPSS+PM
Sbjct: 1801 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNTAAGRTPSSLPM 1860
Query: 1848 ATPPPAALD--------------NRIG-----------------------GAIASKVLPP 1870
+TPPP+A + N + GAI S+
Sbjct: 1861 STPPPSAPNVSSPDLQPLSPVHTNSLNDSKPLHAKPEATNFHLPPSYSEDGAILSRGFVS 1920
Query: 1871 ENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSS 1930
EN L DQRNE+ VTSGTLDAIRERMKSMQLAA AG PD G+RPL+++NDN+NNGLSS
Sbjct: 1921 ENSLGDQRNEKLISGVTSGTLDAIRERMKSMQLAATAGLPDSGSRPLMSVNDNLNNGLSS 1980
Query: 1931 QS-RSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1974
+ D A +ENP G VLP+DEKALSGLQARMERLKSG++EPL
Sbjct: 1981 LILHAPDSAGMENPVLGGVLPLDEKALSGLQARMERLKSGSLEPL 2025
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533943|ref|XP_003535517.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3271 bits (8482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1637/2039 (80%), Positives = 1780/2039 (87%), Gaps = 69/2039 (3%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIAYL+AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW
Sbjct: 61 VADSNAPVQEKALDALIAYLRAADADASRYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAVD FLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 IELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKD VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE QE +SE VGPGP EES D P EIDEYELVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEQEAVSEVVGPGPCEESGNDAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRI+PGDF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
S SSRFLLPVLLEKLKEKKP +AE+L QTLQAMHKAGC++L+D+VE VKT+ KNK
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALAEALMQTLQAMHKAGCISLIDIVEGRFPPYVKTATKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTL WVTFCIETS+K + KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKS
Sbjct: 421 VPLVRSLTLTWVTFCIETSNKVVITKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMI+GS V +S+A VQ + S S E SES V+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAETSESVLVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVK--PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593
+SAA MLSGKRPV + PA KK G VK + K DG + + K E PEDVEP+EMSLEE
Sbjct: 541 RSAAGMLSGKRPVQSVPAVKKVGVVKLGTNKKTDGVPQVKALKSVEPPEDVEPTEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IESR+GSLI +DT+ LKSAVWKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGW
Sbjct: 601 IESRIGSLIESDTITLLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWG 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI ++++TATKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAV
Sbjct: 661 EKNVQVQQQVIEVITHISSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGFIFERLYKIMK+HKNPKVLSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS A
Sbjct: 721 GPGFIFERLYKIMKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
ATRNA+IK LG LH+FVGPDIKGFL DVKPALLSALD EYEKNPFEG + V K+TVRA +
Sbjct: 781 ATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRAKD 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
S+S+V +GG D LPREDISGK +PTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ G
Sbjct: 841 SSSTVVAGGLDSLPREDISGKISPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRL DSNKN+VMA+L +G VASAMG AVEK+SKG+LSDILKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLLDSNKNIVMASLTAIGNVASAMGQAVEKASKGILSDILKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
REC L LDAWLAAVHLDKMVPY+ AL D+KLGAEGRKDLFDWLS+QL+GLS F +AA
Sbjct: 961 RECVLNTLDAWLAAVHLDKMVPYIAIALMDSKLGAEGRKDLFDWLSRQLSGLSSFAEAAQ 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKA+EACI EILR G E IEK +KDI GPAL LI+E++K GA
Sbjct: 1021 LLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLIVEKLKPYGA 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q VS+G SK +K KS +NGVSKHGNRA+SSRV+ TKGA+ ESI S
Sbjct: 1081 FQGTFFESFESGRAVSVGAISK--AKAGKSTANGVSKHGNRAVSSRVVATKGAKSESI-S 1137
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
VQD AVQSQALLN+KDSNKEDRERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLL
Sbjct: 1138 VQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLL 1197
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL D
Sbjct: 1198 SADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLD 1257
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
TL+DEGYSLTESE AVFLPCLVEK GHNIEKVREKMRELTKQ V YSA K PYILEGL
Sbjct: 1258 TLKDEGYSLTESEGAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSACKCFPYILEGL 1317
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGF+IDHHGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYK
Sbjct: 1318 RSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYK 1377
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARA RRSVRENGSD+AE
Sbjct: 1378 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAISRRSVRENGSDVAE 1437
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++++S++GP ++R+NYG + +++R +MPR + SGPTDWNEALDIISFGSPEQSV
Sbjct: 1438 QSGEMTRSLAGP-ILRKNYGQPDSNIDRQLMPRPMTVASGPTDWNEALDIISFGSPEQSV 1496
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLT-GASSRSCKYV 1539
+GMKV+CHELAQAT+DPEGS MDELVKDADRLVSCLANKVA+TFDFSLT GASSRSCKYV
Sbjct: 1497 DGMKVICHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYV 1556
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILD 1599
LNTLMQTFQNKRLA+AV+ESTLDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKILD
Sbjct: 1557 LNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILD 1616
Query: 1600 NADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYD 1659
NADRTSSFVVLINLLRPLD SRWPSPASNES A+RNQ+FSDLVVKCLIKLTKVLQSTIYD
Sbjct: 1617 NADRTSSFVVLINLLRPLDSSRWPSPASNESLASRNQKFSDLVVKCLIKLTKVLQSTIYD 1676
Query: 1660 VDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1719
VDLDRILQSIH+YLQ+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI
Sbjct: 1677 VDLDRILQSIHLYLQDLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1736
Query: 1720 DMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELA 1779
D KPQPIILAYI+LNLETLAAARMLT++GPGGQ HWGDSA NN S T+SADAQLKQELA
Sbjct: 1737 DAKPQPIILAYIELNLETLAAARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELA 1796
Query: 1780 AIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1839
AIFKKIG+KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG
Sbjct: 1797 AIFKKIGEKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1856
Query: 1840 RTPSSVPMATPPPAALD-----------------------------------------NR 1858
RTPSS+PM TPPPA+L+ NR
Sbjct: 1857 RTPSSLPMPTPPPASLNISSPDFAPLSPVNANPLGDAKLNVKPEPTNFNLPPSSYNEENR 1916
Query: 1859 IGGAIASKVLPPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLI 1918
AI S+ L + L DQRN+RF VTSGTLDAIRERMKSMQLAAAAG+ + G R L
Sbjct: 1917 AVNAITSRALNSDYTLGDQRNDRFMTGVTSGTLDAIRERMKSMQLAAAAGSTESGGRHLT 1976
Query: 1919 NMNDNVNNGLSSQSR---SSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1974
+ NDN N GL S+ +S+ EN G VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1977 SANDNFNQGLPPPSQIPHASEHVGTENTMHGGVLPMDEKALSGLQARMERLKSGSLEPL 2035
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574625|ref|XP_003555446.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3254 bits (8437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1638/2039 (80%), Positives = 1785/2039 (87%), Gaps = 69/2039 (3%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
V DSNAPVQ+KALDALIAYL+AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW
Sbjct: 61 VTDSNAPVQEKALDALIAYLRAADADAARYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAVD FLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 IELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKD VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE QE +SE VGPGPSEES D P EIDEYELVDPVDIL PLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEQEAVSEVVGPGPSEESGNDAPQEIDEYELVDPVDILIPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRI+PGDF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
S SSRFLLPVLLEKLKEKKP +AE+LTQTLQAMHKAGC++L+D+VE VKT+ KNK
Sbjct: 361 SSSSRFLLPVLLEKLKEKKPALAEALTQTLQAMHKAGCISLIDIVEGRFPSYVKTATKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTL WVTFCIETS+K ++KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKS
Sbjct: 421 VPLVRSLTLTWVTFCIETSNKGVIMKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMI+GS V +S+A VQ + S S E+SES+FV+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAESSESAFVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEE 593
+SAA MLSGKRPV + P +KKGG VK K DG + + SK E PEDVEP+EMSLEE
Sbjct: 541 RSAAGMLSGKRPVQSVPVAKKGGVVKSGTNKKTDGVPQVKASKSVEPPEDVEPTEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IESR+GSLI +DT+ QLKSAVWKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGWS
Sbjct: 601 IESRIGSLIQSDTITQLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWS 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI ++ +TATKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAV
Sbjct: 661 EKNVQVQQQVIEVITHIGSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGFIFERLYKI+K+HKNPKVLSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS A
Sbjct: 721 GPGFIFERLYKILKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
ATRNA+IK LG LH+FVGPDIKGFL DVKPALLSALD EYEKNPFEG + V K+TVRAS+
Sbjct: 781 ATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRASD 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
S+S+ +GG D LPREDISGK TPTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ G
Sbjct: 841 SSSTAVAGGLDSLPREDISGKITPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRL DSNKN+VMA+L T+G VASAMG AVEK+SKG+LSD+LKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLVDSNKNIVMASLTTIGNVASAMGQAVEKASKGILSDVLKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
REC L LDAWLAAVHLDKMV Y+ AL D+KLGAEGRKDLFDWLSKQL+ LS F +AA
Sbjct: 961 RECVLNTLDAWLAAVHLDKMVSYIAIALMDSKLGAEGRKDLFDWLSKQLSELSSFAEAAQ 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKA+EACI EILR G E IEK +KDI GPAL L+LE++K GA
Sbjct: 1021 LLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLVLEKLKPYGA 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q VS+G TSK +K KS +NGVSKHGNRA+SSRV+ TKG + ESI S
Sbjct: 1081 FQGTFFESFESGRAVSVGATSK--AKAGKSTANGVSKHGNRAVSSRVVATKGTKSESI-S 1137
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
VQD AVQSQALLN+KDSNKEDRERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLL
Sbjct: 1138 VQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLL 1197
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL D
Sbjct: 1198 SADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLD 1257
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
TL+DEGYSLTESE AVFLPCLVEK GHNIEKVREKMRELTKQ V YSA+K PYILEGL
Sbjct: 1258 TLKDEGYSLTESEVAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSASKCFPYILEGL 1317
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGF+IDHHGAEISGQLKSLQIVASLTAERDGE RKAALN LATGYK
Sbjct: 1318 RSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNALATGYK 1377
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARA LRRSVRENGSD+AE
Sbjct: 1378 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARANLRRSVRENGSDVAE 1437
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++++S++GP ++R+NY + +++R +MP + SGPTDWNEALDIISFGSPEQSV
Sbjct: 1438 QSGEMARSLTGP-MLRKNYAQPDSNIDRQLMPHPMTVASGPTDWNEALDIISFGSPEQSV 1496
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLT-GASSRSCKYV 1539
+GMKVVCHELAQAT+DPEGS MDELVKDADRLVSCLANKVA+TFDFSLT GASSRSCKYV
Sbjct: 1497 DGMKVVCHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYV 1556
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILD 1599
LNTLMQTFQNKRLA+AV+ESTLDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKILD
Sbjct: 1557 LNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILD 1616
Query: 1600 NADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYD 1659
NADRTSSFVVLINLLRPLD SRWPSPA NES A+RNQ+FSDLVVKCLIKLTKVLQSTIYD
Sbjct: 1617 NADRTSSFVVLINLLRPLDSSRWPSPALNESLASRNQKFSDLVVKCLIKLTKVLQSTIYD 1676
Query: 1660 VDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1719
VDLDRILQSIH+YLQ+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI
Sbjct: 1677 VDLDRILQSIHLYLQDLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1736
Query: 1720 DMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELA 1779
D KPQPIILAYI+LNLETLAAARMLT++GPGGQ HWGDSA NN S T+SADAQLKQELA
Sbjct: 1737 DAKPQPIILAYIELNLETLAAARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELA 1796
Query: 1780 AIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1839
AIFKKIG+KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG
Sbjct: 1797 AIFKKIGEKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1856
Query: 1840 RTPSSVPMATPPPAALD-----------------------------------------NR 1858
RTPSS+PM TPPPA+L+ NR
Sbjct: 1857 RTPSSLPMPTPPPASLNISSPDFAPLSPVNTNPLGDAKLNVKPDPTNFNLPPSSYNEENR 1916
Query: 1859 IGGAIASKVLPPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLI 1918
AI S+ L + L DQRN+RF VTSGTLDAIRERMKSMQLAAAAG+ + G R L
Sbjct: 1917 AVNAITSRALNSDYTLGDQRNDRFMTGVTSGTLDAIRERMKSMQLAAAAGSTESGGRHLT 1976
Query: 1919 NMNDNVNNGLSSQSR---SSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1974
+ NDN+N+GL S+ +S+ EN G VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1977 SANDNLNHGLPPPSQIPHASEHVGTENTMHGGVLPMDEKALSGLQARMERLKSGSLEPL 2035
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19912731|dbj|BAB88648.1| microtubule bundling polypeptide TMBP200 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 3182 bits (8249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1574/2031 (77%), Positives = 1772/2031 (87%), Gaps = 62/2031 (3%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSE+EKLLKEAKKLPW++R HKNWKVRN+ANIDLAA+CDSITDPKD R+RE GPLF+KT
Sbjct: 1 MSEDEKLLKEAKKLPWDERFAHKNWKVRNDANIDLAAVCDSITDPKDPRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALI YLKAADADAGRYAKEVCDA+ KCLTGRPKTVEKAQ VF+LW
Sbjct: 61 VADSNAPVQEKALDALICYLKAADADAGRYAKEVCDAVVVKCLTGRPKTVEKAQMVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAV+ FLD MEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ
Sbjct: 121 IELEAVEAFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWI K+ VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWISKETVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E++S+ V GPSEES ADVP IDEY+LVDPVDIL PLEK+GFWEGVKA KWS
Sbjct: 241 QDKEPELEVVSDAVAAGPSEESAADVPQRIDEYDLVDPVDILIPLEKTGFWEGVKAAKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTK+IAPGDF E+CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKKIAPGDFAEICRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
SGSSRFLLPVLLEKLKEKKPT+ ++LTQTLQAMHK+GCL L D+VEDVKT+ KNKVPLVR
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTDALTQTLQAMHKSGCLILTDIVEDVKTATKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
SLTLNWVTFCIETS+KA +LK HK+YVPICME LNDGTPEVRDAAFS LAA+AKSVGMRP
Sbjct: 421 SLTLNWVTFCIETSNKAVILKAHKEYVPICMESLNDGTPEVRDAAFSALAAVAKSVGMRP 480
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
LE+S+EKLDDVR+ KLSEMI GSGGD + +SS V +SGG + S +AS S V++SAAS
Sbjct: 481 LEKSLEKLDDVRKKKLSEMIGGSGGDPVSTSSSGAVPSSGGIMSSTQASTGSLVKRSAAS 540
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
MLSGK+PV AAP SKKG K K DG+ + + SK E EDVEP+EMSLEEIES+L
Sbjct: 541 MLSGKKPVQAAPPSKKGASAKSGTNKRGDGATQLKASKPVEV-EDVEPAEMSLEEIESKL 599
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
GSLI +T+ QLKSAVWKERLEAISS ++QVEA++ LD SVEILVRL+C +PGWSEKNVQ
Sbjct: 600 GSLIQPETITQLKSAVWKERLEAISSFKEQVEALKELDPSVEILVRLLCAVPGWSEKNVQ 659
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQ VI++IN++A+TA+K+PKKCVVLCL G+SERVADIKTRA AMKCLTTF EAVGPGF+
Sbjct: 660 VQQLVIDIINHIASTASKYPKKCVVLCLQGVSERVADIKTRAQAMKCLTTFCEAVGPGFV 719
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMV+AV+DFGVSHLKLKDLIDFCKDTGLQSSAAATRNA
Sbjct: 720 FERLYKIMKEHKNPKVLSEGILWMVTAVDDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 779
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSV 837
TIKL+GALHKFVGPDIKGFL+DVKPAL+SALDAEY+KNPFEG +V PKKTV+ S++ S+
Sbjct: 780 TIKLIGALHKFVGPDIKGFLSDVKPALISALDAEYDKNPFEGASVAPKKTVKTSDA-PSL 838
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSGG D LPREDISGK TP L+K LES DWK RLESIE VNKILEEANKRIQP GTGELF
Sbjct: 839 SSGGLDSLPREDISGKITPALLKGLESSDWKARLESIETVNKILEEANKRIQPTGTGELF 898
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
G LRGRL SNKNLV+ATL T+G VASAMGPAVEKSSKG+LSDILKCLGDNKKHMRECTL
Sbjct: 899 GALRGRLCYSNKNLVIATLSTVGGVASAMGPAVEKSSKGILSDILKCLGDNKKHMRECTL 958
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
LD+WLAAVHLDKMVPY+T ALTDAKLGAEGRKDLFDWLSKQLTG+ FPDA HLLKP
Sbjct: 959 NTLDSWLAAVHLDKMVPYITGALTDAKLGAEGRKDLFDWLSKQLTGMKEFPDAVHLLKPV 1018
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ AMTDKS+DVRKAAEAC E+LR GQE + KNLKDIQGPALA+++ER++ G Q
Sbjct: 1019 ASAMTDKSADVRKAAEACFGELLRVCGQEMVSKNLKDIQGPALAIVVERLRPYGVLQETF 1078
Query: 1075 -----VSMGPTSKSSSKVPKSA--SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
S G TSK SK+ KS + S+HGNRA +SR IPT+ +R E++MSVQD +VQ
Sbjct: 1079 DLGRTSSTGTTSKVGSKIGKSTGPAERASRHGNRAGASRAIPTRNSRQETLMSVQDISVQ 1138
Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
SQAL+NVKDS+K +RER+VVRRFKFE+PR+EQIQ+LE+D+MKYFREDLHRRLLSTDFKKQ
Sbjct: 1139 SQALINVKDSHKGERERIVVRRFKFEEPRLEQIQDLESDLMKYFREDLHRRLLSTDFKKQ 1198
Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
VDG+EMLQKALPSI K++IEVLDI+LRWFVL+FC+SNT+CLLKVLEFLPELF+ LR+EGY
Sbjct: 1199 VDGIEMLQKALPSIAKELIEVLDIVLRWFVLRFCESNTSCLLKVLEFLPELFEMLRNEGY 1258
Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
+TE+EAA+FLPCLVEKSGHNIEKVREKMRELTKQI++ YSA KT PYILEGLRS++NRT
Sbjct: 1259 MMTEAEAAIFLPCLVEKSGHNIEKVREKMRELTKQIIHAYSAAKTFPYILEGLRSRSNRT 1318
Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
RIEC DLVG+L+D+H AEI GQLKSL+ VA+LTAERDGE RKAALNTLATGYKILG+DIW
Sbjct: 1319 RIECADLVGYLLDNHEAEIGGQLKSLKDVANLTAERDGETRKAALNTLATGYKILGDDIW 1378
Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
+Y+GKLT+AQ+SMLDDRFKWK REM+K++EG+PGEARAALRRSVR+NG+DIAE SG+VS+
Sbjct: 1379 KYLGKLTEAQRSMLDDRFKWKAREMDKRREGRPGEARAALRRSVRDNGTDIAEPSGEVSR 1438
Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
S++GP L R Y ++E +ER + R ++ GP+DWNEALDII+ SPEQSVEGMKVVC
Sbjct: 1439 SLAGPILNRDIYNNTEFPMERIVNLRPVSGTMGPSDWNEALDIIASDSPEQSVEGMKVVC 1498
Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
H LA ATNDPEGS MD++VKDAD+LVSCLANKVA+TFDFSL GASSRSCKYVLNTLMQTF
Sbjct: 1499 HLLAVATNDPEGSAMDDIVKDADKLVSCLANKVARTFDFSLMGASSRSCKYVLNTLMQTF 1558
Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1607
QN+ LA+AV+ESTLD LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNADRTSSF
Sbjct: 1559 QNRTLAHAVRESTLDILITELLLWLLDERVPRMDDGSQLLKALNVLMLKILDNADRTSSF 1618
Query: 1608 VVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1667
VVLI LLRPLDPSRWPSPA++ES RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQ
Sbjct: 1619 VVLIKLLRPLDPSRWPSPATDESLVIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1678
Query: 1668 SIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPII 1727
SIH+YLQELGM+EIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPIDM+P PII
Sbjct: 1679 SIHIYLQELGMDEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDMQPPPII 1738
Query: 1728 LAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGD 1787
LAYIDLNL+TLAAARMLT + P GQTHWGDSAANNP AT++ADAQLKQELAAIFKKIGD
Sbjct: 1739 LAYIDLNLQTLAAARMLTPSVP-GQTHWGDSAANNPAPATHNADAQLKQELAAIFKKIGD 1797
Query: 1788 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1847
KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM
Sbjct: 1798 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1857
Query: 1848 ATPPPAAL-----------------------------------------DNRIGGAIASK 1866
+TPPP++L D+R G A+ S+
Sbjct: 1858 STPPPSSLNLSSPKFGKLSPVNTNPLNDAKSVNNKVEPSQFSLPPSYGEDDRGGNALLSR 1917
Query: 1867 VLPPE-----NPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMN 1921
L E + L +QRN+R VTSGTL+AIRERMKSM LAA GNPDP +R L++MN
Sbjct: 1918 GLSSEHLELRHQLGEQRNDRLPSGVTSGTLEAIRERMKSMSLAATGGNPDPSSRTLMSMN 1977
Query: 1922 DNVNNGLSSQSRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIE 1972
NV++ +S+Q+ + +S+EN Q VLPMDEKALSGLQARMERLKSG++E
Sbjct: 1978 GNVSHMVSTQAPGIEHSSIENSIQSGVLPMDEKALSGLQARMERLKSGSME 2028
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434204|ref|XP_004134886.1| PREDICTED: protein MOR1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3140 bits (8141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1572/2030 (77%), Positives = 1749/2030 (86%), Gaps = 81/2030 (3%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLAA+CDSITDPKD+R+RE GPLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLSHKNWKVRNEANIDLAAVCDSITDPKDSRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIAYL+AADADAGR+AKE CDAI AKCLTGRPKTVEKAQAVFMLW
Sbjct: 61 VADSNAPVQEKALDALIAYLRAADADAGRFAKETCDAIVAKCLTGRPKTVEKAQAVFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEA DVFLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAADVFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV+G+ARP+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVTGSARPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE +E SE VG GPSEES ADVP EIDEY+LVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEKEDTSEAVGTGPSEESVADVPQEIDEYDLVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAEL+KLAST++IAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNL+RGLR +F
Sbjct: 301 ERKEAVAELSKLASTRKIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLSRGLRANF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
S SSRFLLPVLLEKLKEKKP + ESLTQTLQAMHKAGCL+L DV+EDVKT+ KNKVPLVR
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALMESLTQTLQAMHKAGCLSLSDVIEDVKTASKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
S TL+WVTFCIETS+KA +LKVHK+YVPI ME LNDGTPEVRDAAF LAA+AK
Sbjct: 421 SSTLSWVTFCIETSNKAVILKVHKEYVPIFMESLNDGTPEVRDAAFLALAAVAK------ 474
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
IE L + ++ + + V S+ FV+KSAAS
Sbjct: 475 ----IESLSLSLSSGFGMLVPIYFAFIVN-----------NQLDLVLDSDGLFVKKSAAS 519
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGK------QETSKLTEAPEDVEPSEMSLEEI 594
MLSGKRP AAP+SKKG K K G ++SK E PEDVEP+EMSLEE+
Sbjct: 520 MLSGKRPAQAAPSSKKGNLAKSGTNKKADGSVPSGAPPKSSKPIEVPEDVEPAEMSLEEV 579
Query: 595 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 654
ES+LGSLI ADTV QLKS VWKERLEAISSL+QQVE +++L+ SVEILVRL+C++PGWSE
Sbjct: 580 ESKLGSLIEADTVSQLKSTVWKERLEAISSLKQQVEGLEDLNPSVEILVRLLCIIPGWSE 639
Query: 655 KNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG 714
KNVQVQQQVIEVI Y+A+TA KFPKKC+VLCL GISERVADIKTR AMKCLTTFSEAVG
Sbjct: 640 KNVQVQQQVIEVITYIASTAKKFPKKCIVLCLSGISERVADIKTRVQAMKCLTTFSEAVG 699
Query: 715 PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAA 774
PGFIFERL+KIMK+HKNPKVLSEG+LWMVSAVEDFG+S LKLKDLIDFCK+TGLQSSAAA
Sbjct: 700 PGFIFERLFKIMKEHKNPKVLSEGLLWMVSAVEDFGISLLKLKDLIDFCKETGLQSSAAA 759
Query: 775 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT-VVPKKTVRASES 833
TRN TIKLLG +HKFVGPD+KGFL+DVKPALL+A+D E+EKNPFEGT PK+TVRA E
Sbjct: 760 TRNVTIKLLGCVHKFVGPDLKGFLSDVKPALLTAIDTEFEKNPFEGTAAAPKRTVRAEEL 819
Query: 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT 893
TSS S G+DGLPREDISGK TPTL+K+ ESPDWKVRLESIEAVNK+LEEANKRIQP GT
Sbjct: 820 TSSTSVSGTDGLPREDISGKITPTLLKNFESPDWKVRLESIEAVNKMLEEANKRIQPTGT 879
Query: 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 953
+L G LRGRLYDSNKNLVMATL T+G VASAMGP+VEKS KGVLSD+LKCLGDNKKHMR
Sbjct: 880 SDLLGALRGRLYDSNKNLVMATLATIGNVASAMGPSVEKSGKGVLSDVLKCLGDNKKHMR 939
Query: 954 ECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013
E TLT LDAWLAAVH DKM+PY+ AL D K+ AEGRKDL +WLS++L+G++ DA L
Sbjct: 940 EATLTALDAWLAAVHFDKMIPYMILALVDNKVSAEGRKDLLEWLSRKLSGINDSSDAIQL 999
Query: 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK----- 1068
LKPA A+TDKSSDVRKAAE+CI EILR G QE +EK +KDI GP L+L+LER++
Sbjct: 1000 LKPACSALTDKSSDVRKAAESCITEILRVGRQEAVEKVVKDISGPGLSLVLERLRPYGAL 1059
Query: 1069 ---LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
+ A QV+ SK++ KV K+ SNGV+KHGN+AISSR +KG R ES++S D A
Sbjct: 1060 QESFDSAKQVTSSLPSKNAIKVGKATSNGVAKHGNKAISSRGTISKGNRTESLISAHDLA 1119
Query: 1126 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFK 1185
VQSQALLNVKDSNKE+RER++VR+FKFE+PRIEQIQ+LENDMMKYFREDL RR+LSTDFK
Sbjct: 1120 VQSQALLNVKDSNKEERERIIVRKFKFEEPRIEQIQDLENDMMKYFREDLQRRMLSTDFK 1179
Query: 1186 KQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDE 1245
KQVDG+EMLQKAL SI KD+IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+ L+DE
Sbjct: 1180 KQVDGIEMLQKALASIGKDVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFEILKDE 1239
Query: 1246 GYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNN 1305
GY + ESEAA+FLPCL+EK GHNIEKV+EKMRELTKQI+ YSATK PYILEGLRSKNN
Sbjct: 1240 GYCINESEAAIFLPCLIEKLGHNIEKVKEKMRELTKQIIQAYSATKMFPYILEGLRSKNN 1299
Query: 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGED 1365
RTRIEC DL+GFLID++G+EISGQL+SLQ+VASLTAERDGEIRKAALNTLATGYKILGE+
Sbjct: 1300 RTRIECADLIGFLIDNYGSEISGQLRSLQLVASLTAERDGEIRKAALNTLATGYKILGEE 1359
Query: 1366 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1425
+WRYVGKLTDAQ+SMLDDRFKWKVREMEKKKEGKPGEARAA+RR +RE S++AEQSG+V
Sbjct: 1360 VWRYVGKLTDAQRSMLDDRFKWKVREMEKKKEGKPGEARAAMRRPLREYESEVAEQSGEV 1419
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKV 1485
S+S+SG R+NYG SELH+ER +P+ L + +GPTDWNEA+DIISFGSPEQSVEGMKV
Sbjct: 1420 SRSMSGTISTRKNYG-SELHMERQSVPQPLTTANGPTDWNEAMDIISFGSPEQSVEGMKV 1478
Query: 1486 VCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQ 1545
VCHELAQA++DPEGS MDEL +DADRLV CLA KVAKTFD+SLTGASSRSCKYVLNTLMQ
Sbjct: 1479 VCHELAQASSDPEGSSMDELARDADRLVLCLATKVAKTFDYSLTGASSRSCKYVLNTLMQ 1538
Query: 1546 TFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS 1605
TFQNKRLAYAV+E TLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS
Sbjct: 1539 TFQNKRLAYAVKEKTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS 1598
Query: 1606 SFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRI 1665
SFVVLINLLRPL+PSRWPS S ESFA+RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRI
Sbjct: 1599 SFVVLINLLRPLEPSRWPSTGSKESFASRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRI 1658
Query: 1666 LQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP 1725
LQSIH+YLQ LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP
Sbjct: 1659 LQSIHLYLQNLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP 1718
Query: 1726 IILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKI 1785
IILAYIDLNLETLAAARMLTSTGP GQTHWGDS ANN +S T SADAQLKQELAAIFKKI
Sbjct: 1719 IILAYIDLNLETLAAARMLTSTGPAGQTHWGDSTANNASSGTQSADAQLKQELAAIFKKI 1778
Query: 1786 GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSV 1845
GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQME+NAAAGRTPSS+
Sbjct: 1779 GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMERNAAAGRTPSSL 1838
Query: 1846 PMATPPPAAL----------------------------------------DNRIGGAIAS 1865
P++TPPPA++ DNRI I S
Sbjct: 1839 PLSTPPPASMNSSPDFAPLSPVHTNSLTEAKSLNVKPEPTNFTLPPSYTEDNRI---ITS 1895
Query: 1866 KVLPPENPLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVN 1925
+ P+ L DQRN+++ VTSGTLDAIRERMKSMQLAAAAGN + G++PL+++NDN++
Sbjct: 1896 RGPGPDYSLGDQRNDKYISGVTSGTLDAIRERMKSMQLAAAAGNHESGSKPLMSVNDNLH 1955
Query: 1926 NGLSSQ-SRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1974
G+ +Q S+ S+ VEN AQ VLPMDEKALSGLQARMERLKSGTIEPL
Sbjct: 1956 PGMIAQMSQPSEHIGVENSAQAGVLPMDEKALSGLQARMERLKSGTIEPL 2005
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823359|ref|XP_002879562.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] gi|297325401|gb|EFH55821.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 3076 bits (7976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1539/1987 (77%), Positives = 1722/1987 (86%), Gaps = 27/1987 (1%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA+L DSITDPKD R+R+ G LF+KTV
Sbjct: 3 AEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASLFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIAAKCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIAAKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELTNVSGGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKKP+V E LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKPSVTEPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + SE+SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSEASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +APAS K G KKDGS + E K E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAPASKKVGTGKPGGGKKDGSVRNEGPKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +T+ QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETISQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISSKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIILALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQETIEKNLKDI GPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQETIEKNLKDIHGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK SK+ KS SNG K GNR SR +PTKG++ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVSKISKSTSNGTLKQGNR---SRAVPTKGSQ---ITSVHDIAIQSQALLNT 1134
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQI +LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1135 KDSNKEDRERVVVRRIKFEELRPEQILDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1194
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1195 QKALPSVSKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1254
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQ++ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1255 AIFLPCLAEKLGHNIEKVREKMRELMKQLIQAYSVAKTYPYILEGLRSKNNRTRIECTDL 1314
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L +VASLTAERDGE+RKAALNT+ATGYKILG+DIW+YVGKLT
Sbjct: 1315 IGYLLETCGTEIGGLLKYLNMVASLTAERDGELRKAALNTMATGYKILGDDIWKYVGKLT 1374
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWKV+EMEK++EGKPGEARAALRRSVR+NG ++AEQSGD+SQ V GP
Sbjct: 1375 DAQKSMIDDRFKWKVKEMEKRREGKPGEARAALRRSVRDNGPEVAEQSGDLSQIVPGPLF 1434
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R+NYG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1435 PRQNYGISEQILERNPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1494
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1495 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1554
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1555 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1614
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1615 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1674
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1734
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT IG
Sbjct: 1735 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSKIG 1794
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1795 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1854
Query: 1855 L---DNRIGGAIASKVLPPENPLSDQ-----RNERFGVAVTSGTLDAIRERMKSMQLAAA 1906
L I + P NP SD R V +GTLDAIRERMK+MQL A+
Sbjct: 1855 LALPSPDIPSLSSLDAKPLMNPRSDLYTDDIRASNMNPGVMTGTLDAIRERMKNMQL-AS 1913
Query: 1907 AGNPDPGNRPLINMNDNVNNGLSSQSRSSDRASVENP-AQGSVLPMDEKALSGLQARMER 1965
+G +P ++PL+ NDN++ ++ QS + E P VLPMDEKALSGLQARMER
Sbjct: 1914 SGTLEPVSKPLMPTNDNLS--MNQQSVPQSQMGQETPHTHPVVLPMDEKALSGLQARMER 1971
Query: 1966 LKSGTIE 1972
LK G++E
Sbjct: 1972 LKGGSLE 1978
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30686489|ref|NP_565811.2| microtubule organization 1 protein [Arabidopsis thaliana] gi|75250086|sp|Q94FN2.1|MOR1_ARATH RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein GEMINI POLLEN 1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1; AltName: Full=Protein RID5; AltName: Full=Protein ROOT INITIATION DEFECTIVE 5 gi|14317953|gb|AAK59871.1|AF367246_1 microtubule organization 1 protein [Arabidopsis thaliana] gi|22252950|gb|AAM94170.1| MOR1/GEM1 [Arabidopsis thaliana] gi|330254039|gb|AEC09133.1| microtubule organization 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3054 bits (7918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1528/1987 (76%), Positives = 1718/1987 (86%), Gaps = 29/1987 (1%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +A AS K G KKDGS + E SK E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK +K+ KS SNG K GNR SR +PTKG+ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1615
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1616 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1675
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1676 DLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1735
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT TIG
Sbjct: 1736 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIG 1795
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1796 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1855
Query: 1855 L---DNRIGGAIASKVLPPENPLSDQ-----RNERFGVAVTSGTLDAIRERMKSMQLAAA 1906
L I + V P NP SD R V +GTLDAIRERMK+MQLA++
Sbjct: 1856 LALPSPDIPSLSSLDVKPLMNPRSDLYTDDIRASNMNPGVMTGTLDAIRERMKNMQLASS 1915
Query: 1907 AGNPDPGNRPLINMNDNVNNGLSSQSRSSDRASVEN-PAQGSVLPMDEKALSGLQARMER 1965
+P ++PL+ NDN++ ++ QS + E VLPMDEKALSGLQARMER
Sbjct: 1916 ----EPVSKPLMPTNDNLS--MNQQSVPPSQMGQETVHTHPVVLPMDEKALSGLQARMER 1969
Query: 1966 LKSGTIE 1972
LK G++E
Sbjct: 1970 LKGGSLE 1976
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115440677|ref|NP_001044618.1| Os01g0816400 [Oryza sativa Japonica Group] gi|75251094|sp|Q5N749.1|MOR1_ORYSJ RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1 gi|56785068|dbj|BAD82707.1| putative microtubule bundling polypeptide TMBP200 [Oryza sativa Japonica Group] gi|56785322|dbj|BAD82281.1| putative microtubule bundling polypeptide TMBP200 [Oryza sativa Japonica Group] gi|113534149|dbj|BAF06532.1| Os01g0816400 [Oryza sativa Japonica Group] gi|222619446|gb|EEE55578.1| hypothetical protein OsJ_03864 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 2866 bits (7429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1455/2023 (71%), Positives = 1699/2023 (83%), Gaps = 78/2023 (3%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE GPLFKKTV
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFKKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDAL+A+ +AADADA RYAKEVCDAI AKCLTGRPKTVEKAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALLAFQRAADADASRYAKEVCDAIVAKCLTGRPKTVEKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEA +VFL+ MEKA+KNKVAKAVVPAIDVMFQALSEFGAK++PPK+ILKMLPELFDH D
Sbjct: 123 ELEAAEVFLESMEKAVKNKVAKAVVPAIDVMFQALSEFGAKVVPPKKILKMLPELFDHPD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRASSKGLTLELCRWIGK+PVK ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASSKGLTLELCRWIGKEPVKAILFEKMRDTMKKELEAELANVSGIAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
+KEL +E++ E G SEE+ + P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 EKELEEEVVPEAAGTNNSEEAVPEAPMEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
R+DAVAELTKLASTK+IAPGDF E+CRTLKKLITDVN+AV+VEA QAIGNLA+GLRTHFS
Sbjct: 303 RRDAVAELTKLASTKKIAPGDFHEICRTLKKLITDVNLAVSVEATQAIGNLAKGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
G+SR LLPVLLEKLKEKKPT+ E+L+QTLQAMHK+GC+ L+DV+EDV+ +VKNKVPLVRS
Sbjct: 363 GNSRVLLPVLLEKLKEKKPTMTEALSQTLQAMHKSGCITLLDVIEDVRVAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
LTLNWV FCIETS+KA VLK+HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PL
Sbjct: 423 LTLNWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLS+MI GS D +GT +A +G + E +SS +R+SAASM
Sbjct: 483 ERSLEKLDDVRKKKLSDMI-GSASDTTSGTVAA--SNTGVGTSAREVMDSSSMRRSAASM 539
Query: 542 LSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAP--EDVEPSEMSLEEIESRL 598
LSGK+PV A PA+KK GP K +AKK G Q SK + AP EDVEPSEMSLEEIE +L
Sbjct: 540 LSGKKPVQAVPATKKSGPAKSATAKKTDGGPQ--SKASAAPVIEDVEPSEMSLEEIEEKL 597
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
S++ ++T+ QLKS VWKERLEAIS L+Q+VE++ LD+S E+LVRL+C +PGWSEKNVQ
Sbjct: 598 SSVVKSETISQLKSTVWKERLEAISMLKQEVESLTELDKSAELLVRLLCAVPGWSEKNVQ 657
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQVIEV Y+A+T +FPK+CVVLCLLGISERVADIKTR HAMKCLT F EAVGPGF+
Sbjct: 658 VQQQVIEVSTYIASTVNRFPKRCVVLCLLGISERVADIKTRGHAMKCLTAFCEAVGPGFV 717
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMVSAVEDFG+S+LKLKD IDFCKD GLQSSAAATRNA
Sbjct: 718 FERLYKIMKEHKNPKVLSEGILWMVSAVEDFGISNLKLKDTIDFCKDIGLQSSAAATRNA 777
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV-VPKKTVRASESTSSV 837
TIKL+G LHKFVGPDIKGFL+DVKPALLS LDAEYEKNPFEGT PK+TVRA+++ SS
Sbjct: 778 TIKLIGVLHKFVGPDIKGFLSDVKPALLSTLDAEYEKNPFEGTASAPKRTVRAADAVSSA 837
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSG SDGLPREDIS K TPTL+K+L SPDWK+RLESI+AV+KI+EEA+KRIQP GT ELF
Sbjct: 838 SSGTSDGLPREDISAKITPTLLKNLGSPDWKLRLESIDAVSKIVEEAHKRIQPTGTVELF 897
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
LR RLYDSNKNLVMATL T+G +ASAMGPAVEKSSKG+L+D+LKCLGDNKKHMRECTL
Sbjct: 898 TALRARLYDSNKNLVMATLSTIGGLASAMGPAVEKSSKGILADVLKCLGDNKKHMRECTL 957
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T LD W+AA LDKMVPY+T L D K G+EGRKDLFDWLSK + +S +A LLKP+
Sbjct: 958 TALDLWVAAAQLDKMVPYITVTLGDQKTGSEGRKDLFDWLSKHASNMSDPSEALPLLKPS 1017
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ ++ DKSS+VRKAAE+ + EIL+ GQ+ + KNLKD+ P LA++ ER+KL+ +
Sbjct: 1018 ASSLMDKSSEVRKAAESFMNEILKICGQDVVAKNLKDLPSPTLAIVAERLKLSTVHEGFS 1077
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
SM SK+ SK K N + ++A+S R IP + + +++S QD ++Q
Sbjct: 1078 DSVKMVTTSMSLPSKAGSKNNKHGPNDRGSNVSKAVSQRGIPARSSV--TMISSQD-SIQ 1134
Query: 1128 SQALLNVKDSNKEDRERMV-VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKK 1186
SQAL N+KDSNKE+RER V VR+FKFE+PR EQI EL+ ++ ++FRED+ RL ++DFK+
Sbjct: 1135 SQALFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKR 1194
Query: 1187 QVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEG 1246
Q+DG+E+LQKALPS RK++IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D+
Sbjct: 1195 QIDGIELLQKALPSSRKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQS 1254
Query: 1247 YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNR 1306
Y LTE+EAA+FLPCL+EKSGHNIEKVREKM EL KQ+VN YS K LPYILEGLRSKNNR
Sbjct: 1255 YMLTEAEAAIFLPCLMEKSGHNIEKVREKMGELIKQMVNIYSLPKLLPYILEGLRSKNNR 1314
Query: 1307 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
TRIECVD++G+ +DHHG E+SG LK+L VA+LTAERDGEIRKAALNTLAT YK LG+D+
Sbjct: 1315 TRIECVDIIGYFMDHHGTEVSGLLKNLPSVAALTAERDGEIRKAALNTLATAYKNLGDDV 1374
Query: 1367 WRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD-V 1425
WRYVGKL+DAQ+SMLDDRFKWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+ V
Sbjct: 1375 WRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGEAV 1434
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVS-GPTDWNEALDIISFGSPEQSVEGMK 1484
S+S++G + R N+G+S+ H ++PR +A+ + GP DW EALDI++ G PEQSVEGMK
Sbjct: 1435 SRSMAGSMISRENFGYSDAH----MVPRQMATATPGPADWREALDIVALGLPEQSVEGMK 1490
Query: 1485 VVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLM 1544
V+CHEL QA DPE SV+D+L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTLM
Sbjct: 1491 VICHELTQAV-DPESSVLDDLIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTLM 1549
Query: 1545 QTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRT 1604
QTFQ KRLA+AV+E TLD+LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNA+RT
Sbjct: 1550 QTFQIKRLAHAVKEGTLDNLITELLLWLLDERVPLMDDGSQLLKALNVLMLKILDNAERT 1609
Query: 1605 SSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDR 1664
SSFVVLINLLRPLDPSRWPSP ES A +NQ+FSDLVVKCLIKLTKVLQSTIY+VDLDR
Sbjct: 1610 SSFVVLINLLRPLDPSRWPSPTPPESLAVKNQKFSDLVVKCLIKLTKVLQSTIYEVDLDR 1669
Query: 1665 ILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQ 1724
ILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPID +PQ
Sbjct: 1670 ILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDAEPQ 1729
Query: 1725 PIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKK 1784
PIILAYIDLNL+TLAAARMLT +G GQTHWGD+ +NNP +T+S DAQLKQELAA+FKK
Sbjct: 1730 PIILAYIDLNLQTLAAARMLTPSGTMGQTHWGDAGSNNPNPSTHSTDAQLKQELAAVFKK 1789
Query: 1785 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS 1844
IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS
Sbjct: 1790 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSS 1849
Query: 1845 VPMAT-------------PPPA---ALDN----------------RIGGAIASKVLPPEN 1872
+P++T P P +++N R G I +++
Sbjct: 1850 LPLSTPPPIAPIPSPKFAPSPVHTKSINNKTDCNEDDAGGDTHPFRGQGEIDNRL----- 1904
Query: 1873 PLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGN-RPLINMNDNVNNGLSSQ 1931
++ + +R+ +SGTLDA+RERMKS+Q AA N D RPL +MN N +G
Sbjct: 1905 QTTNLQTDRYQ---SSGTLDALRERMKSIQAAAVGANFDGVQARPLPSMNGNTLHG---- 1957
Query: 1932 SRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1974
R + Q + PMDE+ALSGLQARMERLKSG++EPL
Sbjct: 1958 ---GTRLDADPQTQNIIPPMDERALSGLQARMERLKSGSMEPL 1997
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1974 | ||||||
| TAIR|locus:2058739 | 1978 | MOR1 "MICROTUBULE ORGANIZATION | 0.984 | 0.982 | 0.728 | 0.0 | |
| UNIPROTKB|E1B7K5 | 2032 | CKAP5 "Uncharacterized protein | 0.526 | 0.511 | 0.294 | 9.8e-174 | |
| UNIPROTKB|E2RSW0 | 2033 | CKAP5 "Uncharacterized protein | 0.565 | 0.548 | 0.285 | 4.7e-173 | |
| UNIPROTKB|Q14008 | 2032 | CKAP5 "Cytoskeleton-associated | 0.564 | 0.548 | 0.285 | 2.3e-171 | |
| ZFIN|ZDB-GENE-051120-174 | 2033 | ckap5 "cytoskeleton associated | 0.507 | 0.492 | 0.295 | 4e-169 | |
| UNIPROTKB|F1P0Y0 | 2036 | CKAP5 "Uncharacterized protein | 0.526 | 0.510 | 0.294 | 6.7e-169 | |
| MGI|MGI:1923036 | 2032 | Ckap5 "cytoskeleton associated | 0.528 | 0.513 | 0.288 | 9.7e-169 | |
| UNIPROTKB|F1M949 | 1778 | Ckap5 "Protein Ckap5" [Rattus | 0.405 | 0.449 | 0.292 | 5.7e-143 | |
| DICTYBASE|DDB_G0268616 | 2013 | cepJ "centrosomal protein 224 | 0.273 | 0.267 | 0.271 | 4.1e-122 | |
| UNIPROTKB|F1SIB5 | 1517 | F1SIB5 "Uncharacterized protei | 0.257 | 0.335 | 0.313 | 2.3e-114 |
| TAIR|locus:2058739 MOR1 "MICROTUBULE ORGANIZATION 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 7206 (2541.7 bits), Expect = 0., P = 0.
Identities = 1438/1975 (72%), Positives = 1613/1975 (81%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
PWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTVADSNAPVQ+KALD
Sbjct: 16 PWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTVADSNAPVQEKALD 75
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVME 134
ALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWVELEAVDVFLD ME
Sbjct: 76 ALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWVELEAVDVFLDTME 135
Query: 135 XXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
+DVMFQALSEFG+K+IPPKRILKMLPELFDHQDQNVRAS+KG+TLE
Sbjct: 136 KAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQDQNVRASAKGVTLE 195
Query: 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDV 254
LCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQDKE E S+ V
Sbjct: 196 LCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQDKEPEAEASSDVV 255
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS 314
G GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSERK+AVAELTKLAS
Sbjct: 256 GDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLAS 315
Query: 315 TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXX 374
TK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS SSRF
Sbjct: 316 TKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFSASSRFMLPVLLEK 375
Query: 375 XXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434
+V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS TL W+TFC+ETS
Sbjct: 376 LKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRSSTLTWLTFCLETS 435
Query: 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 494
+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPLERS+EKLDDVR+
Sbjct: 436 NKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPLERSLEKLDDVRKK 495
Query: 495 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554
KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASMLSGKRP +A AS
Sbjct: 496 KLSEMIAGSGGGDQAGTSSVTVQSSVGSTATGN-SDASFVRKSAASMLSGKRPAPSAQAS 554
Query: 555 KKGGPVKPSA-KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSA 613
KK G KP KKDGS + E SK E PEDVEP+EM LEEIE+RLGSL+ +TV QLKS+
Sbjct: 555 KKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGSLVKPETVSQLKSS 614
Query: 614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAAT 673
VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKN Y+++T
Sbjct: 615 VWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQQQVIEIITYISST 674
Query: 674 ATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPK 733
A KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FERL+KIMK+HKNPK
Sbjct: 675 AAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFERLFKIMKEHKNPK 734
Query: 734 VLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793
VLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATIKLLGALHKFVGPD
Sbjct: 735 VLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATIKLLGALHKFVGPD 794
Query: 794 IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGK 853
IKGFL DVKPALLSALD EYEKNPFEGT PK+ V+ LPREDIS K
Sbjct: 795 IKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVVKTSVSTSTSSGGLDS-LPREDISTK 853
Query: 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913
TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGLRGRL DSNKNLVM
Sbjct: 854 ITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGLRGRLLDSNKNLVM 913
Query: 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 973
TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL LD WL AVHLDKM+
Sbjct: 914 QTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAALDLWLGAVHLDKMI 973
Query: 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAE 1033
PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS AMTDKS+DVRKAAE
Sbjct: 974 PYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTAMTDKSADVRKAAE 1033
Query: 1034 ACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQVSMGPTXXXXXXX 1087
CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+ GP
Sbjct: 1034 GCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSKAMAGPVSKGVTKI 1093
Query: 1088 XXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVV 1147
NG K GNR SR +PTKG+ I SV D A+QSQALLN KDSNKEDRER+VV
Sbjct: 1094 SKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNTKDSNKEDRERVVV 1148
Query: 1148 RRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1207
RR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+LQKALPS+ K+IIE
Sbjct: 1149 RRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIE 1208
Query: 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267
VLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EAA+FLPCL EK GH
Sbjct: 1209 VLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEAAIFLPCLAEKLGH 1268
Query: 1268 NIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS 1327
NIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL+G+L++ G EI
Sbjct: 1269 NIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDLIGYLLETCGTEIG 1328
Query: 1328 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKW 1387
G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLTDAQKSM+DDRFKW
Sbjct: 1329 GLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLTDAQKSMIDDRFKW 1388
Query: 1388 KVRXXXXXXXXXXXXARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVE 1447
K + ARAALRRSVR++G ++AEQSGD+SQ+V GP R++YG SE +E
Sbjct: 1389 KAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLFPRQSYGISEQMLE 1448
Query: 1448 RSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVK 1507
R+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+NDPE S +DELVK
Sbjct: 1449 RTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQASNDPEESAIDELVK 1508
Query: 1508 DADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQXXXXXXXXXX 1567
DAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+AV+
Sbjct: 1509 DADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAHAVKEGTLESLITE 1568
Query: 1568 XXXXXXXERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPAS 1627
ERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LLRPLDPSRWPSPA+
Sbjct: 1569 LLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLLRPLDPSRWPSPAT 1628
Query: 1628 NESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGA 1687
E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ+LGMEEIRRRAGA
Sbjct: 1629 AEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQDLGMEEIRRRAGA 1688
Query: 1688 DDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTST 1747
DDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLNLETLAAARMLT+T
Sbjct: 1689 DDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLNLETLAAARMLTAT 1748
Query: 1748 GPGGQTHWGXXXXXXXXXXXXXXXXQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPK 1807
GP GQTHW QLKQEL AIFKKIGDKQT TIGLY+LY IT+ YPK
Sbjct: 1749 GPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIGLYDLYHITKSYPK 1808
Query: 1808 VDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAAL---DNRIGGAIA 1864
VDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++L I +
Sbjct: 1809 VDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSSLALPSPDIPSLSS 1868
Query: 1865 SKVLPPENPLSDQ-----RNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLIN 1919
V P NP SD R V +GTLDAIRERMK+MQLA++ +P ++PL+
Sbjct: 1869 LDVKPLMNPRSDLYTDDIRASNMNPGVMTGTLDAIRERMKNMQLASS----EPVSKPLMP 1924
Query: 1920 MNDNVN-NGLXXXXXXXXXXXVE-NPAQGSVLPMDEKALSGLQARMERLKSGTIE 1972
NDN++ N V +P VLPMDEKALSGLQARMERLK G++E
Sbjct: 1925 TNDNLSMNQQSVPPSQMGQETVHTHPV---VLPMDEKALSGLQARMERLKGGSLE 1976
|
|
| UNIPROTKB|E1B7K5 CKAP5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 9.8e-174, Sum P(3) = 9.8e-174
Identities = 319/1085 (29%), Positives = 522/1085 (48%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGMEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +G RP R +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINPVQLKELEEEWVKLPTGAPRPARFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEK 487
+ + + K + K + ++ +ND PEVRDAAF L K VG + P ++K
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 488 L--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544
L D ++ ++ E++ G +A + G + S A + K A++ G
Sbjct: 485 LKLDKIKECSEKVELVHGKKAGLAADKKDFK-PVPGRAAASGAAGDKD--TKDASAPKPG 541
Query: 545 KRPVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGS 600
P+ APA+K GGP K A + G+G T K E E VEP E+S+E E + +
Sbjct: 542 --PLKKAPAAKPGGPPKKGKPAAQGGTGGTGTKSKKAVETKEMVEP-ELSIEVCEEKASA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++PA + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 599 VLPATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ +++ D+K +A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACVLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXX-- 838
LLG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 777 TLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGE 836
Query: 839 ---------XXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ 889
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQ
Sbjct: 837 DGDEPDDGGSDAVDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAAIINEA-KFIQ 895
Query: 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949
P GEL L+GRL DSNK LV TL L +A AMGP +++ K + ++ LGD+K
Sbjct: 896 P-NIGELPTALKGRLNDSNKILVQQTLTILQQLAVAMGPNIKQHVKNLGIPVITVLGDSK 954
Query: 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 1009
++R L ++AW + + + + K R++L WL+++L L P
Sbjct: 955 NNVRSAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPT 1014
Query: 1010 AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILE 1065
L P + + D++ DVRK A+ + + G E + K LK + +LE
Sbjct: 1015 DLILCVPQLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLE 1074
Query: 1066 RIKLN 1070
+ K N
Sbjct: 1075 KAKAN 1079
|
|
| UNIPROTKB|E2RSW0 CKAP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 4.7e-173, Sum P(3) = 4.7e-173
Identities = 331/1160 (28%), Positives = 549/1160 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKLVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ + + K + K + ++ +ND PEVRDAAF L K VG + + + +D
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 491 VRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR- 546
++ +K+ SE + G A G ++ + ++ VP A+ + K + + K
Sbjct: 485 LKLDKIKECSEKVELVHGKKA-GLAADKKESK--PVPGRTATSGAAGDKDTKDISAPKPG 541
Query: 547 PVSAAPASKKGGPVK---PSAK-KDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602
P+ AP +K GGP K P+A GS + K E E VEP E+S+E E + +++
Sbjct: 542 PLKKAPTTKAGGPPKKGKPAAPGSTGSAGTKNKKGPETKEIVEP-ELSIEVCEEKASAVL 600
Query: 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXX 662
PA + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 601 PATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQM 660
Query: 663 XXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERL 722
+A F K + L G+ +++ D+K +A + +T +EA + E++
Sbjct: 661 KLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQV 719
Query: 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782
+ KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I L
Sbjct: 720 MSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITL 778
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXX---- 838
LG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 779 LGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGISKHSISGTDEGEDG 838
Query: 839 -------XXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP
Sbjct: 839 DEPDEVGTDVVDLLPRTEISDKITSELVSKISDKNWKIRKEGLDEVAGIINEA-KFIQP- 896
Query: 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951
GEL L+GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K +
Sbjct: 897 NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNN 956
Query: 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011
+R L ++AW + + + + K R++L WL+++L L P
Sbjct: 957 VRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDL 1016
Query: 1012 HLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERI 1067
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1017 ILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKA 1076
Query: 1068 KLNGASQ--VSMGPTXXXXXXXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
K N ++ S + S ++SS V P + + V A
Sbjct: 1077 KANMPAKPAASAKASSKPMGGSAPAKFQPSSAPVEDSVSSTVEPKPDPKKAKALGVSSKA 1136
Query: 1126 VQSQAL-LNVKDSNKEDRER 1144
+Q + K S KED ++
Sbjct: 1137 KSAQGKKVPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|Q14008 CKAP5 "Cytoskeleton-associated protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 2.3e-171, Sum P(3) = 2.3e-171
Identities = 332/1161 (28%), Positives = 546/1161 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +A RPTR +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALESVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 IKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ + + K + K + ++ +ND PEVRDAAF L K VG + + + +D
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 491 VRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR- 546
++ +K+ SE + G A G ++ + + +P A+ + K + + K
Sbjct: 485 LKLDKIKECSEKVELIHGKKA-GLAADKKEFK--PLPGRTAASGAAGDKDTKDISAPKPG 541
Query: 547 PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLI 602
P+ APA+K GGP K A G+G T K E E VEP E+S+E E + +++
Sbjct: 542 PLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVL 600
Query: 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXX 662
P + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 601 PPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQM 660
Query: 663 XXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERL 722
+A F K + L G+ +++ D+K +A + +T +EA + E++
Sbjct: 661 KLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQV 719
Query: 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782
+ KNPK SE + W+ +A+++FG S L +K I K T L ++ A R A I L
Sbjct: 720 VSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTAAITL 778
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX----- 837
LG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 779 LGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGISKHSTSGTDEGEDG 838
Query: 838 ------XXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891
LPR +IS K T LV + +WK+R E ++ V I+ +A K IQP
Sbjct: 839 DEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINDA-KFIQP- 896
Query: 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951
GEL L+GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K +
Sbjct: 897 NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNN 956
Query: 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011
+R L ++AW + + + + K R++L WL+++L L P
Sbjct: 957 VRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDL 1016
Query: 1012 HLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERI 1067
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1017 ILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKA 1076
Query: 1068 KLNGASQVSMGPTXXXXX---XXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDF 1124
K+N ++ + PT S ISS P + +
Sbjct: 1077 KVNMPAKPAP-PTKATSKPMGGSAPAKFQPASAPAEDCISSSTEPKPDPKKAKAPGLSSK 1135
Query: 1125 AVQSQAL-LNVKDSNKEDRER 1144
A +Q + K S KED ++
Sbjct: 1136 AKSAQGKKMPSKTSLKEDEDK 1156
|
|
| ZFIN|ZDB-GENE-051120-174 ckap5 "cytoskeleton associated protein 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 4.0e-169, Sum P(4) = 4.0e-169
Identities = 314/1064 (29%), Positives = 515/1064 (48%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + L + + + LG L KK V +SNA Q K L+
Sbjct: 11 PIDQKCEHKVWKARLSGYEEALKLFQKLDEKSPEWSKYLG-LIKKFVTESNAVAQLKGLE 69
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEK--AQAVFMLWVELEAVDVFLDV 132
A +A+++ A AG+ EV + K +PK K + ++++E+E +V D
Sbjct: 70 AALAFIENAHV-AGKTVGEVVSGVVNKVFN-QPKARAKELGTEICLMYIEIEKAEVVQDE 127
Query: 133 MEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ I+ + +AL EFG+KII K ++K+LP+LF+ +++ VR +K L
Sbjct: 128 LIKGLDNKNPKIVVACIEALRKALCEFGSKIITLKPVVKVLPKLFESREKAVRDEAKLLA 187
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQD---KELGQE 248
+E+ RWI +D ++ L + + KELE E V V TA + R +R++QD K Q+
Sbjct: 188 VEIYRWI-RDALRAPL-QNINSVQLKELEEEWVKVPATAPKQIRFLRSQQDLKAKFEQQQ 245
Query: 249 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
D G EE V ++D YEL++ V+IL+ L K F+E ++A KW ERK+A+
Sbjct: 246 AAGGDEADGDDEEVAEAV--QVDAYELLEAVEILSKLPKD-FYEKIEAKKWQERKEALEA 302
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFX 367
+ L ++ GD+ ++ R LKK+I D N+ + A + + LA GLR F +
Sbjct: 303 VEALTKNPKLESGDYGDLVRALKKVIGKDANVMLVSMAAKCLAGLATGLRKKFGTYAGLV 362
Query: 368 XXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
V ++L + + A+ L ++ EDV + NK P ++ ++
Sbjct: 363 VPTILEKFKEKKPQVVQALQEAIDAVFLTTTLQ--NISEDVLAVMDNKNPSIKQQASLFL 420
Query: 428 TFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486
+ + + K V K + ++ +ND PEVRDAAF L K +G + + +
Sbjct: 421 ARSFRHCTPSTLPKSVLKPFCAAFLKQVNDSAPEVRDAAFEALGTAMKVIGEKAVNPFLT 480
Query: 487 KLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTSGGSVPSVEA-SESSFVRKSAA 539
+D ++ +K+ E +I GG G + + + + P VEA +++S K +A
Sbjct: 481 DVDKLKLDKIKECADKVELIGKKGG----GGGEKKERPAAKASPPVEAPAKTSGPPKKSA 536
Query: 540 SMLSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
P AA KKG P PSAK + K E E +E +E+S E E +
Sbjct: 537 -------PAKAAGPPKKGKPAAAPSAK--------SKKAPETKEIIE-TELSPEVCEEKA 580
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXX 658
+++PA + L SA WKERL ++ ++ VE + + + LV+++ PGW E N
Sbjct: 581 AAVLPASCMQLLDSANWKERLASMEEFQKAVEQMDKSEMPCQALVKMLAKKPGWKETNFQ 640
Query: 659 XXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
L A +F K ++ L G+ +++ D+K +A + LT EA +
Sbjct: 641 VMQMKLSIVG-LVAQKGQFSKTSALVVLDGLVDKIGDVKCGGNAKEALTAIGEACSLPWT 699
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
E++ I KNPK +E + W+ +A+++FG + + +K I+ K T L ++ A R +
Sbjct: 700 AEQVVSIAFAQKNPKNQAETLNWLANAMKEFGFAGINVKGFINNVK-TALGATNPAVRTS 758
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP----KKT------- 827
I LLG ++ ++G ++ F D KPALLS +DAE+ K + P KK
Sbjct: 759 AIALLGVMYLYMGAPLRMFFEDEKPALLSQIDAEFVKMQGQSPPAPTRGAKKAGAEEDGD 818
Query: 828 VRAXXXXXXXXXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V LPR DIS K T +V + +WK+R E ++ V ++ EA K
Sbjct: 819 VADEDEADGGAGDIMDMLPRTDISDKITSEMVSKISDKNWKIRKEGLDEVAAVISEA-KF 877
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
IQ A GEL L+GRL DSNK LV TL L +A AMGP++++ K + ++ LGD
Sbjct: 878 IQ-ANIGELPMALKGRLNDSNKLLVQQTLNILQQIAIAMGPSLKQHVKNLGIPVVTVLGD 936
Query: 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007
+K ++R + L+AW+ + + + + K R++L WLS++L L
Sbjct: 937 SKPNVRATAMATLNAWVEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLSEKLPTLRTV 996
Query: 1008 PDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
P L P + D+S DVRK A+ + + G + + K
Sbjct: 997 PADLMLCVPHLYTCLEDRSGDVRKKAQDALPTFMMHLGFDKMTK 1040
|
|
| UNIPROTKB|F1P0Y0 CKAP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 6.7e-169, Sum P(3) = 6.7e-169
Identities = 319/1084 (29%), Positives = 514/1084 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + L I D K + L KK V DSNA Q K L+
Sbjct: 11 PIDQKCEHKLWKARLNGYEEALKLFQKIDDEKSPEWSKYLGLIKKFVTDSNAVAQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAV--FMLWVELEAVDVFLDV 132
A +AY++ A AG+ EV + K +PK K V ++++E+E + +
Sbjct: 71 AALAYVENAHV-AGKTTGEVASGVVNKVFN-QPKARAKELGVDICLMYIEIEKGEAVQEE 128
Query: 133 MEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K L
Sbjct: 129 LLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESREKAVRDEAKLLA 188
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELIS 251
+E+ RWI +D ++ L + + KELE E V VS A + TR +R++Q EL +
Sbjct: 189 VEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKVSSAAPKQTRFLRSQQ--ELKAKFEQ 244
Query: 252 EDVGPGPSEESTAD---VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
+ G +E D P++D YEL++ V+IL+ L K F+E ++A KW ERK+A+
Sbjct: 245 QQAAGGDGDEGDDDEEEAVPQVDAYELLEAVEILSKLPKD-FYEKIEAKKWQERKEALEA 303
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFX 367
+ L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 304 VEVLVKNPKLESGDYADLVKVLKKVVGKDTNVMLVALAAKCLAGLASGLRKKFGQYAGHV 363
Query: 368 XXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 364 VPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFI 421
Query: 428 TFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLER 483
+ + + K + K + ++ +ND PEVRDA F L K G + P
Sbjct: 422 ARSFRHCTPSTLPKSLLKPFCAALLKHINDSAPEVRDAGFEALGTALKVAGEKAVNPFLA 481
Query: 484 SIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLS 543
++KL R + +E + G + G P++ S K AA+
Sbjct: 482 DVDKLKLDRIKECAEKVELVYGKKTGAAEKKEGKPVAGKAPALSGSAGDKEIKDAAAK-P 540
Query: 544 GKRPVSAAPASKKGGPVKPSAKKDGSGKQET-SKLTEAPEDVE--PSEMSLEEIESRLGS 600
G P AP K GGP K S +G +K + PE E SE+S+E E + +
Sbjct: 541 G--PQKKAPVVKPGGPPKKSKPAAAAGTGGAGAKGKKGPETKEIFESELSIEVCEEKAAA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++PA + QL S WKERL ++ ++ VE ++ + + LVR++ PGW E N
Sbjct: 599 VLPASCIQQLDSGNWKERLASMEEFQKAVELMERSEMPCQALVRMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ ++V D+K ++A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKVGDVKCGSNAKEAMTAIAEACQLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVVAMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXX 840
LLG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 777 TLLGVMYLYVGPPLRMFFEDEKPALLSQIDAEFEKMQGQTAPAPTRGISRHSGGSGDDGE 836
Query: 841 XXXX----------LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP 890
LPR DI K T LV + +WK+R E ++ V I+ +A K IQP
Sbjct: 837 EEEQEDVGNDVVDLLPRTDIGDKITAELVAKIGDKNWKIRKEGLDEVTSIINDA-KFIQP 895
Query: 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950
GEL L+ RL DSNK LV TL L +A+AMGP +++ K + ++ LGD+K
Sbjct: 896 -NIGELPAALKSRLNDSNKILVQQTLSILQQLATAMGPNIKQHVKNLGIPVITVLGDSKN 954
Query: 951 HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
++R L ++AW + + + + K R++L WL+ +L L P
Sbjct: 955 NVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLADKLPTLRSVPSD 1014
Query: 1011 AHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILER 1066
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1015 LLLCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGFEKMAKATGKLKPTSKDQVLAMLEK 1074
Query: 1067 IKLN 1070
K N
Sbjct: 1075 AKAN 1078
|
|
| MGI|MGI:1923036 Ckap5 "cytoskeleton associated protein 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1095 (390.5 bits), Expect = 9.7e-169, Sum P(3) = 9.7e-169
Identities = 314/1089 (28%), Positives = 516/1089 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + +++VE+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +D+ VR +K +
Sbjct: 130 LKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLFAI 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RW +D VK L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 190 EIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P++D YEL+D V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEK 487
+ + + K + K + ++ +ND PEVRDAAF L K VG + P ++K
Sbjct: 425 RHCTSSTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKSVNPFLADVDK 484
Query: 488 L--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544
L D ++ ++ E++ G +AT ++ G + S A + K + G
Sbjct: 485 LKLDRIKECSEKVELVHGKKSGLATEKKESK-PLPGRAAASGAAGDKD--TKDVSGPKPG 541
Query: 545 KRPVSAAPASKKGGPVKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGS 600
P+ P +K GGP K + GS T K E E VEP E+S+E E + +
Sbjct: 542 --PLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGLETKEIVEP-ELSIEVCEEKASA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++P + L S+ WKERL + ++ VE ++ + + LV+++ PGW E N
Sbjct: 599 VLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMPCQALVKMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ +++ D+K +A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXX 840
LLG ++ +VGP ++ D KPALLS +DAE++K + P + +
Sbjct: 777 TLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGIAKHSTSATDEGE 836
Query: 841 XXXX-----------LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ 889
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQ
Sbjct: 837 DGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQ 895
Query: 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949
P GEL L+GRL DSNK LV TL L +A AMG + + K + ++ LGD+K
Sbjct: 896 P-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGANIRQHVKNLGIPVITVLGDSK 954
Query: 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 1009
++R L ++AW + + + + K R++L WL+++L L P
Sbjct: 955 NNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPT 1014
Query: 1010 AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILE 1065
L P + + D++ DVRK A+ + + G E + K LK + +LE
Sbjct: 1015 DLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLE 1074
Query: 1066 RIKLNGASQ 1074
+ K N S+
Sbjct: 1075 KAKANMPSK 1083
|
|
| UNIPROTKB|F1M949 Ckap5 "Protein Ckap5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 5.7e-143, Sum P(3) = 5.7e-143
Identities = 244/834 (29%), Positives = 395/834 (47%)
Query: 265 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT 324
D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L + R+ GD+
Sbjct: 6 DEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEGLVRSPRLEAGDYA 64
Query: 325 EVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVA 383
E+ + LKK++ D N+ + A + + LA GLR F + V
Sbjct: 65 ELVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVV 124
Query: 384 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-V 442
++L + + A+ L ++ EDV + NK P ++ T ++ + + + K +
Sbjct: 125 QALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSFRHCTSSTLPKSL 182
Query: 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502
K + ++ +ND PEVRDAAF L K VG + + + +D ++ +K+ E
Sbjct: 183 LKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKTVNPFLADVDKLKLDKIKE--CS 240
Query: 503 SGGDVATGTSSARVQTSGGSVPSV-EASESSFVRKSAASMLSGKRP--VSAAPASKKGGP 559
++ G S S P A+ S +SG +P + APA+K GGP
Sbjct: 241 EKVELVHGKKSGLAAEKKESKPLPGRAAASGAAGDKDTKDVSGPKPGPLKKAPATKAGGP 300
Query: 560 VKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW 615
K + GS T K E E EP E+S+E E + +++P + L S+ W
Sbjct: 301 PKKGKTTAPGGSASSGTKNKKGLETKEIAEP-ELSIEVCEEKASAVLPPTCIQLLDSSNW 359
Query: 616 KERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATAT 675
KERL + ++ VE ++ + + LV+++ PGW E N +A
Sbjct: 360 KERLACMEEFQKAVELMERSEMPCQALVKMLAKKPGWKETNFQVMQMKLHIVALIAQKGN 419
Query: 676 KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
F K + L G+ +++ D+K +A + LT +EA + E++ + KNPK
Sbjct: 420 -FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNPKNQ 478
Query: 736 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795
SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP ++
Sbjct: 479 SETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGPSLR 537
Query: 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX-----------XXXXXXX 844
D KPALLS +DAE++K + P + +
Sbjct: 538 MIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGISKHSTSGTDEGDDGDEPGDGSNDVVDL 597
Query: 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+GRL
Sbjct: 598 LPRVEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALKGRL 655
Query: 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964
DSNK LV TL L +A AMGP V++ K + IL LGD+K ++R L ++AW
Sbjct: 656 NDSNKILVQQTLNILQQLAVAMGPNVKQHVKNLGIPILTVLGDSKNNVRAAALATVNAWA 715
Query: 965 AAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTD 1023
+ + + + K R++L WL+++L L P L P + + D
Sbjct: 716 EQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPMLRSTPTDLILCVPHLYSCLED 775
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLNGASQ 1074
++ DVRK A+ + + G E + K LK + +LE+ K N S+
Sbjct: 776 RNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKANMPSK 829
|
|
| DICTYBASE|DDB_G0268616 cepJ "centrosomal protein 224 kDa" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 4.1e-122, Sum P(6) = 4.1e-122
Identities = 153/563 (27%), Positives = 266/563 (47%)
Query: 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
EDR+ HKNWK R +L + + E GP FKK +AD N Q++AL+ L
Sbjct: 12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPL 71
Query: 77 IAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEX 135
A++ D ++A + K RP+ EK +L +E ++ + ++ +
Sbjct: 72 SAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLK 130
Query: 136 XXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195
+ + QAL FG K IP K ILK F+++D+ +R + L +E+
Sbjct: 131 GTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEI 190
Query: 196 CRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISEDV 254
RWIGK + ++ E + K L+ + + + A P + R+E K L S+ +
Sbjct: 191 YRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPAVPLKYTRSEAAKALANA--SKGI 247
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-TKLA 313
P +V EID Y L+ V+IL L S F+EG++A KW ER + + +L T L
Sbjct: 248 QAKP------EVVEEIDPYSLMTAVNILPKLT-SEFYEGLQAKKWQERSEQMDKLVTILT 300
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXX 373
+T +I DF+E+C+ LKK++ DVN+ + +A+ +IG LA LR F+ +
Sbjct: 301 NTPKIETADFSELCKALKKILADVNVMIVQKAVVSIGLLADSLRGGFTSYVKPFITPILE 360
Query: 374 XXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433
+V +S+ T+ ++ ++L D+++++ ++++KVP ++ L ++ I
Sbjct: 361 KFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTATMQSKVPQIKQEVLVFICNSITN 419
Query: 434 SSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492
+ K A + KV K I ME LND +RD A AA+ +G R + + ++D ++
Sbjct: 420 TKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAFAALGGIIGERAMTPYLNQIDPIK 479
Query: 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552
K+ + + VAT + + + ++ SS +K AA+ + K + P
Sbjct: 480 AKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLPVSSSNKKPAAATGNSKSSSTTTP 535
Query: 553 ASKKGG----PVKPSAKKDGSGK 571
+ P PS+ D K
Sbjct: 536 TGRSSNSSPLPPPPSSSDDIKNK 558
|
|
| UNIPROTKB|F1SIB5 F1SIB5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 2.3e-114, Sum P(3) = 2.3e-114
Identities = 167/533 (31%), Positives = 258/533 (48%)
Query: 557 GGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 612
GGP K A + G+G T K E E VEP E+S+E E + +++PA + L S
Sbjct: 2 GGPPKKGKPAAQGGTGSTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVLPAPCIQLLDS 60
Query: 613 AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAA 672
+ WKERL + ++ VE + + + LVR++ PGW E N +A
Sbjct: 61 SNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQMKLHIVALIAQ 120
Query: 673 TATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP 732
F K + L G+ +++ D+K +A + LT +EA + E++ + KNP
Sbjct: 121 KGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNP 179
Query: 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792
K SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP
Sbjct: 180 KNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGP 238
Query: 793 DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXX-------- 844
++ F D KPALLS +DAE+EK + P + +
Sbjct: 239 SLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGEDGDEPDDGGNDV 298
Query: 845 ---LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+
Sbjct: 299 VDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALK 356
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K ++R L ++
Sbjct: 357 GRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNNVRAAALATVN 416
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA- 1020
AW + + + + K R++L WL+++L L P L P +
Sbjct: 417 AWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDLILCVPHLYSC 476
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLN 1070
+ D++ DVRK A+ + + G E + K LK + +LE+ K N
Sbjct: 477 LEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKAN 529
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94FN2 | MOR1_ARATH | No assigned EC number | 0.7689 | 0.9918 | 0.9898 | yes | no |
| Q5N749 | MOR1_ORYSJ | No assigned EC number | 0.7192 | 0.9853 | 0.9739 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1974 | |||
| pfam12348 | 228 | pfam12348, CLASP_N, CLASP N terminal | 0.001 | |
| pfam02985 | 31 | pfam02985, HEAT, HEAT repeat | 0.003 |
| >gnl|CDD|221541 pfam12348, CLASP_N, CLASP N terminal | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 30/187 (16%)
Query: 299 WSERKDAVAELTKL----ASTKRIAPGDFTEVCRTLK----KLITDVNIAVAVEAIQAIG 350
W R+ A+ +L + A P +F + L K ++ + ++ +
Sbjct: 21 WDAREKAIIKLRSIIKGNAPED--YPSEFLAGLKQLLEGILKALSSLRTTLSSTGCHLLK 78
Query: 351 NLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 410
LA L H + LLP LL+ + K ++++ Q + + V ++
Sbjct: 79 ELAIQLGHHLDPFAEILLPTLLKLCGDTKKIISQNANQAVADILSN-----VSYTPRLEL 133
Query: 411 SV-------KNKVPLVRSLTLNW-----VTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458
KN P R + W + S + Y + L D
Sbjct: 134 QHISAALQDKNVQP--REYSAIWLKILLIRHGHHKSHIEHHGGL-DLYEKSLKKGLEDAN 190
Query: 459 PEVRDAA 465
P VR+ A
Sbjct: 191 PGVRETA 197
|
This region is found at the N terminal of CLIP-associated proteins (CLASPs). CLASPs are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules. In yeast, Drosophila, and Xenopus, a single CLASP orthologue is present. In mammals, a second paralogue (CLASP2) exists which has some functional overlap with CLASP1. Length = 228 |
| >gnl|CDD|202500 pfam02985, HEAT, HEAT repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.003
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSV 476
+P+ +E LND PEVR+AA L A+A+ +
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALAEVL 31
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1974 | |||
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.84 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.69 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.44 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.42 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.36 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 98.99 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.97 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.74 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.73 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.64 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.55 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.54 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.37 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.32 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.3 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.17 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.12 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.08 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.03 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.95 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.94 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.93 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 97.76 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.75 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 97.71 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.68 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 97.6 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.54 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.49 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 97.44 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.33 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.23 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.0 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.74 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.71 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 96.67 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 96.36 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 96.28 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.25 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.1 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 95.69 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 95.63 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 95.6 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 95.57 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 95.54 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.54 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.53 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 95.5 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.46 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 95.28 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.14 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 95.09 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.05 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 94.86 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 94.58 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 94.51 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 94.48 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.35 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 94.34 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 94.32 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 93.89 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 93.84 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 93.51 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 93.5 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 93.19 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 91.5 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 91.48 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 91.46 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 91.32 | |
| KOG1087 | 470 | consensus Cytosolic sorting protein GGA2/TOM1 [Int | 91.04 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 90.83 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 90.77 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 90.73 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 90.45 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 90.34 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 90.27 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 90.14 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 90.09 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 89.56 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 89.45 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 89.33 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 89.27 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 88.86 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 88.21 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 88.17 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 87.7 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 87.05 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 86.58 | |
| KOG1087 | 470 | consensus Cytosolic sorting protein GGA2/TOM1 [Int | 86.43 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 86.38 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 86.18 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 86.04 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 85.68 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 85.33 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 85.15 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 84.81 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 84.55 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 83.42 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 83.29 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 83.12 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 83.02 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 82.36 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 82.33 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 81.94 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 81.03 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 80.87 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 80.17 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 80.01 |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-69 Score=692.33 Aligned_cols=770 Identities=26% Similarity=0.300 Sum_probs=642.4
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh-cCCCccchHHHHHHHHHHHHHHHHhcCCCCccc
Q 000166 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCM-LPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 681 (1974)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~-~PgwkesNfqV~~k~leil~~la~~~~~fs~~~ 681 (1974)
+.+....+.++.||.|++++..+..+.+..+..+..++.+++.... .++|++.||||+--.+.++..-..+... +...
T Consensus 7 ~~~~~~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~~~~~-~~~~ 85 (815)
T KOG1820|consen 7 SVGTDSELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRVNIRD-TKTQ 85 (815)
T ss_pred ccccchhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhcccccccccC-cchh
Confidence 4455555889999999999999999998876666666777776654 3789999999999988888843221111 2222
Q ss_pred hhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHH
Q 000166 682 VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1974)
Q Consensus 682 ~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~ 761 (1974)
+-.++ .|+.|.+-...+..+++.+++.....+++..++..+.++++|++..+++.|+...|.+||+.....+.+++
T Consensus 86 ~~~~i----~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~D~nvr~~~~~l~v~ 161 (815)
T KOG1820|consen 86 SLLRI----GKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLADKNVRSEASKLLVE 161 (815)
T ss_pred HHHHH----HHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccccccccchhhcccchh
Confidence 22232 78888898888888899999999999999999999999999999999999998888899998888888888
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCC
Q 000166 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (1974)
Q Consensus 762 ~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~ 841 (1974)
+.+-.|.++.+...|.++..+++++..|.|.....|+.+.+|.+.+....|++++..+....|.++++...+....+.+.
T Consensus 162 i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~ 241 (815)
T KOG1820|consen 162 IYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDN 241 (815)
T ss_pred hhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccc
Confidence 88777899999999999999999999999999999999999999999999999998888888888877655543333445
Q ss_pred CCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHH
Q 000166 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 921 (1974)
Q Consensus 842 ~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~ 921 (1974)
-|++||+||+++|++.|.++|.|++||+|+||||.+.++|+++++.++.+.+|++...++.|++|+|.|++++|++||+.
T Consensus 242 ~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ 321 (815)
T KOG1820|consen 242 FDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILEL 321 (815)
T ss_pred cccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999875578999889999999999999999999999999999
Q ss_pred HHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHh
Q 000166 922 VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1974)
Q Consensus 922 lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l 1001 (1974)
||.+||..|.+|++.++|.++.+|+|+|+.+|++++.|+|+|+++++++.+.++|.++|+++ ||+.|.+++.|+.++|
T Consensus 322 ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 322 IAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGK--NPQIKGECLLLLDRKL 399 (815)
T ss_pred HHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 7999999999999999
Q ss_pred ccCCC---Cc-chhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCC---
Q 000166 1002 TGLSG---FP-DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074 (1974)
Q Consensus 1002 ~~~~~---~~-~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~--- 1074 (1974)
..+.. .. ....+++.++...+|++.|||++|.++++++|+++|++.+.+.+.++++.- +....++.++..
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~---~~~~~E~~~p~~~~~ 476 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQD---IKPKEEKLKPLLHFL 476 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccch---hhhhhhhcccccccc
Confidence 99873 22 344455558889999999999999999999999999999999999999873 333444444422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHH----hh
Q 000166 1075 VSMGPTSKSSSKVPKSASNGVSKH-----GNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE----RM 1145 (1974)
Q Consensus 1075 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~----~~ 1145 (1974)
..+.+++++..+.....+...+.. .....++..+|.+.+...+. .. .....+.+.. .+..+++|. ++
T Consensus 477 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~~-~~-~~~~~~~~~~--~~~~~~~~~~~~~~r 552 (815)
T KOG1820|consen 477 AAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANSS-RK-IPEAAEAPKL--QLSLKEQRVVLGTRR 552 (815)
T ss_pred ccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCcccccccc-cC-Ccchhhcccc--ccccccchhhhhhhh
Confidence 222223322222111111000000 00001111112211111100 00 0011112212 356688886 56
Q ss_pred hhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhccccch
Q 000166 1146 VVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNT 1225 (1974)
Q Consensus 1146 ~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dtN~ 1225 (1974)
.+.+|++..|..+..+. |...+...+...|||.||+.|.++++.++.....+.++..++.|++++|+++||+++|+
T Consensus 553 ~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~lr~~~~~~ 628 (815)
T KOG1820|consen 553 KVSPKTVVAPVDDKKEP----SKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQDLLLEWLVLRFEETNE 628 (815)
T ss_pred ccCccccccchhhhhcc----cccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHHhhhhHHHHHHhhcccH
Confidence 77899999887666655 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCCh
Q 000166 1226 TCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNN 1305 (1974)
Q Consensus 1226 ~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~ 1305 (1974)
+++.+.++|+...|+.+...+|.++..|+..|.|++..+.|..+|.+|+.++.|.+....++...+..+++.+++..||.
T Consensus 629 ~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l~~~~~ 708 (815)
T KOG1820|consen 629 ALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREALELKER 708 (815)
T ss_pred HhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHhhcCccccccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhccCCHHHHhhHHHHH
Q 000166 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1385 (1974)
Q Consensus 1306 r~R~EcL~el~~li~~~G~~v~~~~Kal~~iA~~i~drD~~VR~AALn~l~~~Y~~~Gd~v~k~vg~ls~k~~smLeer~ 1385 (1974)
++|.||++.+.+++..-|.....-.+++..|+-...++|..+|+++.+++...|.+.|+.+|++.+.+.+.|+++++.||
T Consensus 709 ~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 788 (815)
T KOG1820|consen 709 EIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMF 788 (815)
T ss_pred hhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhc
Confidence 99999999999999999987644456789999999999999999999999999999999999999999999999999999
Q ss_pred HHhHH
Q 000166 1386 KWKVR 1390 (1974)
Q Consensus 1386 kr~~k 1390 (1974)
++..+
T Consensus 789 ~~~~~ 793 (815)
T KOG1820|consen 789 PKERR 793 (815)
T ss_pred Ccccc
Confidence 98655
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=574.50 Aligned_cols=755 Identities=19% Similarity=0.228 Sum_probs=541.9
Q ss_pred ccCCCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhh-hHHHHH
Q 000166 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYA-KEVCDA 97 (1974)
Q Consensus 19 rL~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~~-~~v~~~ 97 (1974)
++..++||.|+++|.. +++|+|+.+|+.+ .++..|+..++....... ...+-.
T Consensus 13 ~l~~~~w~~~~~~~~q-------------------------l~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~ 66 (815)
T KOG1820|consen 13 ELCSQSWKNRLEAWKQ-------------------------LLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLS 66 (815)
T ss_pred hhhhhhhhhhHHHHHH-------------------------HhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeecc
Confidence 3778888888877653 4578899999999 999999988766444332 223455
Q ss_pred HHhhhhcC-ChhhHHHHHHHHHHHHhhchhhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhh
Q 000166 98 IAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPEL 176 (1974)
Q Consensus 98 lveK~L~~-r~ktk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~~K~ilk~l~~l 176 (1974)
+.++||.. ++.+.+..+++.+.....++...+++.+.+.++.|.||.+++++..+..++.+||...++++.+++.++.+
T Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l 146 (815)
T KOG1820|consen 67 FGLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSL 146 (815)
T ss_pred chhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccc
Confidence 67899975 78888888888888877889999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCC-CCCcchhhhHHhHHhhhhhcccCCC
Q 000166 177 FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVG 255 (1974)
Q Consensus 177 f~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~-~~P~R~~Rs~q~~~~~~~a~~~~~~ 255 (1974)
+ |+|||.++.+|+++||||+|.. .+..++..--+.++.++...+.+.... ....|.+-+.+-.........+...
T Consensus 147 ~---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~ 222 (815)
T KOG1820|consen 147 A---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLE 222 (815)
T ss_pred c---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhccc
Confidence 9 9999999999999999999974 667776566666777777666664321 1111111111110000000000000
Q ss_pred CCCCC--CCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCC--CCCCChhHHHHHHH
Q 000166 256 PGPSE--ESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLK 331 (1974)
Q Consensus 256 ~~~~~--~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pK--i~~~dy~dL~~~Lk 331 (1974)
..... .........+|.||+++||||++|++ .+|.+.|.++|||+|+|||+.+.+++++++ +..+.|+.+...++
T Consensus 223 ~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~k 301 (815)
T KOG1820|consen 223 KPERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLK 301 (815)
T ss_pred ccccccccccCCCCCCccccccCchhhhhhhcC-hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHH
Confidence 00000 01111222389999999999999999 489999999999999999999999998888 55677788888888
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHH
Q 000166 332 KLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTS 411 (1974)
Q Consensus 332 k~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~a 411 (1974)
.+..|+|++||++|++||+.||++||..|.+|++.++|.+|++|||||+.+++++++|+|+|+.. +.++++.+.|.++
T Consensus 302 i~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~ 379 (815)
T KOG1820|consen 302 IRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEA 379 (815)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999985 7999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHhhCCh-hHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCH
Q 000166 412 VKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1974)
Q Consensus 412 l~~KnP~vk~etl~~L~r~l~~~~~-~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~ 490 (1974)
++||||++|.+|+.|+.||+...+. .+....++.++|.++++.+|++++||+||.++++++|+++|++.++.+|.++++
T Consensus 380 lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 380 LKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred hcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 9999999999999999999998763 333356789999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchh-hhhhhhhhcccCCCC-CCCCCCCCCCCCCCCCCCCCC
Q 000166 491 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRP-VSAAPASKKGGPVKPSAKKDG 568 (1974)
Q Consensus 491 ~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~p-~~~~~~~~k~~~~~~~~a~~~ 568 (1974)
.-++.+.|.+...-.....+.++..++. +..+.+. .++...+......++ ++.+|.... ...++...+..
T Consensus 460 ~~~~~~~E~~~p~~~~~~~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~s-s~~~~~~~~~~ 531 (815)
T KOG1820|consen 460 QDIKPKEEKLKPLLHFLAAPKEKSSAPD-------PQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLS-SANSSRKIPEA 531 (815)
T ss_pred chhhhhhhhccccccccccCCCcCCCCC-------ccccccceecccccccCCCCCCCccccCCCccc-ccccccCCcch
Confidence 7566666655431000000000000000 0000000 000000000000000 000000000 00000000000
Q ss_pred CCCccc-ccCCCCCCC-------CC-CCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchh
Q 000166 569 SGKQET-SKLTEAPED-------VE-PSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQS 638 (1974)
Q Consensus 569 ~~~~~~-s~~~~~~~~-------~~-~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~-~~~~~~~ 638 (1974)
+..+.. -...+.... .. ..-...+|..+.+...++......+++.|++...++.+.+...-.. .......
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ 611 (815)
T KOG1820|consen 532 AEAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSI 611 (815)
T ss_pred hhccccccccccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchH
Confidence 000000 000000000 00 0112346666667777888889999999999999999999855444 3333344
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC----CCccchhhhccchhhccccch--hhhHHHHHHHHHHHh
Q 000166 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK----FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEA 712 (1974)
Q Consensus 639 ~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~----fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~aE~ 712 (1974)
.++++.|+. -+|.|+|-++..+.++++........- -+........+-+..+.|..+ .+.....+.....++
T Consensus 612 ~~~~l~~~~--lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v 689 (815)
T KOG1820|consen 612 QDLLLEWLV--LRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEV 689 (815)
T ss_pred HhhhhHHHH--HHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhh
Confidence 567778876 368999999999999999876654211 111111222222333555543 455556677777888
Q ss_pred hchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc
Q 000166 713 VGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (1974)
Q Consensus 713 ~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1974)
++..-....+++.+ ..|+-.++.+|+..+...+..-|+..+...-+.....- +.......+|..+.+.+..+|.+.|+
T Consensus 690 ~s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (815)
T KOG1820|consen 690 LSVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIAL-LVKASDGKSSSKVKKTSWKPFDFLPD 767 (815)
T ss_pred ccccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccc-cccccchhhhhhhhcccccccccccc
Confidence 88888888888885 89999999999999999999999876555444443333 36778889999999999999999999
Q ss_pred hhHhhhhcchHHHHHHHHHHHhcCCC
Q 000166 793 DIKGFLADVKPALLSALDAEYEKNPF 818 (1974)
Q Consensus 793 ~l~~~l~dlkpall~~Ie~EF~K~~~ 818 (1974)
+++.......+.+.+.++..|.+-..
T Consensus 768 ~~~~~~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 768 PSWKISILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred hHHHHHHHhhHHHhhhHHHhcCcccc
Confidence 99999999999999999999987543
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=213.97 Aligned_cols=210 Identities=28% Similarity=0.395 Sum_probs=149.6
Q ss_pred CCCCchhhhhhhccCChHHHHHHHHHHHHhhhcC--CCCCCChhHHHH----HHHHHhcchhHHHHHHHHHHHHHHHHHh
Q 000166 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVCR----TLKKLITDVNIAVAVEAIQAIGNLARGL 356 (1974)
Q Consensus 283 ~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~p--Ki~~~dy~dL~~----~Lkk~l~DsNv~vv~~A~~~i~~LA~gL 356 (1974)
..+. +.|+.+..+.+|++|.+||+.|..++... .-..++|.+.++ .+.+.+.|.|..|+..|+.|++.|+..+
T Consensus 6 ~~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 6 EEIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp GGS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455 47878888999999999999999987644 222234444444 6667888999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-hhhh-HHHHHHHhhcCCchhHHHHHHHHHHHHhhC
Q 000166 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-LVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1974)
Q Consensus 357 r~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~-l~~~-~e~i~~al~~KnP~vk~etl~~L~r~l~~~ 434 (1974)
+.+|.+|+..++|++|++++++|..|++++.+||++++.+ ++ ...+ .+.+..+++||||++|.+++.|+..++...
T Consensus 85 ~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~--~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 85 GSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES--CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp GGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT--S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred hHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH--CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999997 45 5666 788889999999999999999999999987
Q ss_pred C--hhHHh--HhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHH
Q 000166 435 S--KAAVL--KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (1974)
Q Consensus 435 ~--~~~~~--~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI 496 (1974)
+ ...+. ..++.+++.+.++++|++++||++|..++..+++++|++. ..+++.||+..++.+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 7 23332 2347899999999999999999999999999999999986 566799998777655
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=182.96 Aligned_cols=204 Identities=20% Similarity=0.312 Sum_probs=143.3
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchH-------HHHhhhccchhHhHHHHHHHHHHHHHHh
Q 000166 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF-------GGLRGRLYDSNKNLVMATLITLGAVASA 925 (1974)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~-------~aLk~Rl~DsNk~lv~~al~ii~~lA~a 925 (1974)
.|.+.|.++..+.||+.|.|||+.|..++... +......+++ ..+...+.|.|..|+..|+.+++.++..
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~---~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~ 83 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGN---APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ 83 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH----B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcC---CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35556666779999999999999999999853 1122223333 3666899999999999999999999999
Q ss_pred cChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-chhh-hHHHHHHHhcccCCcchHHHHHHHHHHHhcc
Q 000166 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (1974)
Q Consensus 926 mG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l~~~-~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~ 1003 (1974)
+|..|++|+..++|.++++++|+|+.+|++|.+||++++..++ ...+ ++.+...+.+. ||..|...+.||...+..
T Consensus 84 l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 84 LGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEK 161 (228)
T ss_dssp HGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT
T ss_pred HhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 5666 66777777755 799999999999999998
Q ss_pred CCC-Ccc------hhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHH
Q 000166 1004 LSG-FPD------AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALAL 1062 (1974)
Q Consensus 1004 ~~~-~~~------~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~ 1062 (1974)
.+. ... ...+++.+..+|.|.+++||++|..++..++.++|..+ ...+..|+|..+..
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~ 226 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKY 226 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH---------------
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhccccc
Confidence 872 111 24566778889999999999999999999999999997 44557777765543
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-08 Score=132.23 Aligned_cols=394 Identities=16% Similarity=0.225 Sum_probs=258.9
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHhhhhc--CChhhHHHHHHHHHHHHhhc---hhh-hHH
Q 000166 57 FKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE---AVD-VFL 130 (1974)
Q Consensus 57 ~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~~~~v~~~lveK~L~--~r~ktk~~a~e~~l~~vE~e---~~~-~v~ 130 (1974)
+-.-++..|..=+|.||-.+..+.+.-+....-+- .-+-++..+|++ +++ .|-.|...+-.|++.- ..+ .-+
T Consensus 123 L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~-~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~ 200 (1075)
T KOG2171|consen 123 LFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL-DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKF 200 (1075)
T ss_pred HHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH-HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHH
Confidence 33458999999999999988877766543222222 234567899998 466 7776666666665542 222 123
Q ss_pred HHHHH--------HhhccCchhHHHHHHHHHHHHHhhCCCccC--hhHHHhhchhhhcCC--ChhHHHHHHHHHHHHHHh
Q 000166 131 DVMEK--------AIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLELCRW 198 (1974)
Q Consensus 131 e~ll~--------~~~~K~PKvvaaai~~l~~~l~~FG~kvv~--~K~ilk~l~~lf~h~--dk~VR~ea~~L~velyrw 198 (1974)
..++| ....-+-++...++.++.+++..++- .+. +..|++..=+++.+. |..+|.-|..+++.+-++
T Consensus 201 ~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 201 RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 44444 33444556678888888888888774 442 566778777777765 678999999999999888
Q ss_pred hCCchhhH--HHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCC-CCCCCCCCCCCCCCcccc
Q 000166 199 IGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPG-PSEESTADVPPEIDEYEL 275 (1974)
Q Consensus 199 lG~~~lk~--~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~-~~~~~~~~~~~~iDp~dl 275 (1974)
-|...|- .+...|=++.++....+ ..++ -..+...++++.-+||.+
T Consensus 280 -Ap~~~k~~~~~~~~lv~~~l~~mte~------------------------------~~D~ew~~~d~~ded~~~~~~~~ 328 (1075)
T KOG2171|consen 280 -APAMCKKLALLGHTLVPVLLAMMTEE------------------------------EDDDEWSNEDDLDEDDEETPYRA 328 (1075)
T ss_pred -hHHHhhhchhhhccHHHHHHHhcCCc------------------------------ccchhhccccccccccccCcHHH
Confidence 2211111 11122222222211100 0000 000000011111223322
Q ss_pred -----------CCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHH
Q 000166 276 -----------VDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAV 343 (1974)
Q Consensus 276 -----------~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~ 343 (1974)
+++.-|++.+= +-+...+.|.+||+|+.+|-+|-.+.. ..+.-.+....++.+.-.-+.|..-.|-.
T Consensus 329 A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~ 407 (1075)
T KOG2171|consen 329 AEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRY 407 (1075)
T ss_pred HHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 22333443332 345566799999999999999988763 55555567888999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHH--HHHHHHHHHHHHHHhcCCC------hhhhHH-HHHHHhhc
Q 000166 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQAMHKAGCLN------LVDVVE-DVKTSVKN 414 (1974)
Q Consensus 344 ~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~--V~eA~~~aLda~~~~~~~~------l~~~~e-~i~~al~~ 414 (1974)
.|+++||.+++-+.+.|.+|.+..+|+.|--..|.-.+ |..++..||+.++.. |.. |+.+++ -+...+++
T Consensus 408 AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 408 AALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888777766666555 555666677777665 533 455555 33445567
Q ss_pred CCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhC----CCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000166 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1974)
Q Consensus 415 KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~----Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~ 487 (1974)
.+|.|+.++..=++..-.... ..+.++.+.++|.+.++|. +..-++|-...+|++.+-..||.+.+.++.+.
T Consensus 487 ~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~e 562 (1075)
T KOG2171|consen 487 SKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEE 562 (1075)
T ss_pred CchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHH
Confidence 789999988888776654332 3345777889998888873 34466777888999999999998777777653
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.8e-07 Score=117.33 Aligned_cols=516 Identities=17% Similarity=0.193 Sum_probs=343.7
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccc-hhh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y-~~~ 366 (1974)
.+...+-|+.=..|++|=+.+..+...++ +...|..++. -+|-.+-++|+=.+..+...+=+....- ...
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 35556777888889999999988776555 6778888887 8888899999988888887754444333 223
Q ss_pred hHHHHHHH-hccCCHHHHHHHHHHHHHHHHhcC-CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhh
Q 000166 367 LLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1974)
Q Consensus 367 ~l~~lLek-lKEKK~~V~eA~~~aLda~~~~~~-~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k 444 (1974)
+-..||+. ++|.+++||.++...+-.++..-- -.-.+++.-+..+.++.||+.|+-.+..|..+....+. .+...++
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~ 158 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHLD 158 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhHH
Confidence 34444543 689999999999999999998610 02335666777788999999998888887766654432 2335678
Q ss_pred hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC-hhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000166 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1974)
Q Consensus 445 ~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G-e~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1974)
.+.+.+.+|++|.+..||-+|..+++++..... ++...+....+=|.-..-..+.+.-
T Consensus 159 ~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~--------------------- 217 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD--------------------- 217 (1075)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc---------------------
Confidence 999999999999999999999999999988774 2222222221111111111111100
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000166 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1974)
Q Consensus 524 ~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~ 603 (1974)
..+++
T Consensus 218 ------------------------------------------------------------------~d~~~--------- 222 (1075)
T KOG2171|consen 218 ------------------------------------------------------------------GDDDA--------- 222 (1075)
T ss_pred ------------------------------------------------------------------cchHH---------
Confidence 00000
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-------
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD-QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT------- 675 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~-~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~------- 675 (1974)
-..+++.|.+.++.....- ...+-++.+-..--+=+|-|=-+....|+++..+++.++
T Consensus 223 --------------a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 223 --------------AKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA 288 (1075)
T ss_pred --------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence 0112222332223311111 111112221111112245555677788888888887643
Q ss_pred CCCccchhhhccchhhcccc--------------chhhhHHHHHHHHHHHhhchHhHHHHHHHhh---hhcCChhhHHHH
Q 000166 676 KFPKKCVVLCLLGISERVAD--------------IKTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEG 738 (1974)
Q Consensus 676 ~fs~~~~~~~l~~lveKlgD--------------~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~---~~~KnPKv~ae~ 738 (1974)
.+..+.+..++.-.+|-..| --....|.++|-.++=..|++.|+..+++.+ ..+-++|-|..+
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 23445555555555555555 1135677888888999999999888776644 578899999999
Q ss_pred HHHHHHHHHHhccCc-cchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh-hcchHHHHHHHHHHHhcC
Q 000166 739 ILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKN 816 (1974)
Q Consensus 739 l~wl~~ai~eFG~~~-l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l-~dlkpall~~Ie~EF~K~ 816 (1974)
|.-++.+-+-.+=.. =++..+++.+... |.++.|-||-+|.+.+|-|---++|.+-.+. +-+.|++...++..
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~---- 443 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST---- 443 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc----
Confidence 999999887443111 1566888888884 9999999999999999999999998887666 66777777766543
Q ss_pred CCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHc-ccCCCCCCccc
Q 000166 817 PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-NKRIQPAGTGE 895 (1974)
Q Consensus 817 ~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~a-nkrI~p~~~ge 895 (1974)
++ =++-.-|--++-...+++ +.-|.|=+ -.
T Consensus 444 --~~----------------------------------------------~rV~ahAa~al~nf~E~~~~~~l~pYL-d~ 474 (1075)
T KOG2171|consen 444 --QN----------------------------------------------VRVQAHAAAALVNFSEECDKSILEPYL-DG 474 (1075)
T ss_pred --Cc----------------------------------------------hHHHHHHHHHHHHHHHhCcHHHHHHHH-HH
Confidence 10 112222222232333332 23344543 55
Q ss_pred hHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhcc----CchhHHHHHHHHHHHHHHhccch
Q 000166 896 LFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD----NKKHMRECTLTVLDAWLAAVHLD 970 (1974)
Q Consensus 896 L~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D----~K~~vR~aa~~alda~~~~~gl~ 970 (1974)
|+.-+=.+| .-.++.++.+++..|+.+|.|++.+|.+|...++|-+...|.. ....+|....+|+..+..++|=+
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 666333344 5667788889999999999999999999999999998887764 44688899999999999999988
Q ss_pred hhhHHHH
Q 000166 971 KMVPYVT 977 (1974)
Q Consensus 971 ~~~~~i~ 977 (1974)
.|.|.-.
T Consensus 555 ~F~~~a~ 561 (1075)
T KOG2171|consen 555 KFLPLAE 561 (1075)
T ss_pred hhhHhHH
Confidence 8887533
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-07 Score=119.38 Aligned_cols=879 Identities=18% Similarity=0.213 Sum_probs=461.4
Q ss_pred cccccCCCChhHHHHHHHHHHHHhhh----cCCCCChhhhhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhh
Q 000166 16 WEDRLLHKNWKVRNEANIDLAALCDS----ITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYA 91 (1974)
Q Consensus 16 l~erL~hK~WKaRl~ayeel~~~f~~----~~d~~d~~~~~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~~ 91 (1974)
|-|+..++.=-=|--|-.+|.+..+. +.+++ +.+....+-|.+.|+|--+|.-|+.++--++.+-.. ...
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dS---e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke---~~l 83 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDS---ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE---DQL 83 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccc---hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH---HHH
Confidence 44556666555677777777776653 22222 233333455789999999999999998766654322 123
Q ss_pred hHHHHHHHhhhhcCChhhHH-HHHHHHHHHHhhc-h-----hhhHHHHHHHHhhccCch------hHHHHHHHHHHHHHh
Q 000166 92 KEVCDAIAAKCLTGRPKTVE-KAQAVFMLWVELE-A-----VDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSE 158 (1974)
Q Consensus 92 ~~v~~~lveK~L~~r~ktk~-~a~e~~l~~vE~e-~-----~~~v~e~ll~~~~~K~PK------vvaaai~~l~~~l~~ 158 (1974)
+.++..+..+.++|+-..+. -|+...+...++- + .-.|+.-+.+-+..-+-| +...++..|...+..
T Consensus 84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 44555555666666444444 3445555555553 1 135667777777777777 889999999999999
Q ss_pred hCCCccC-hhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhH---HHhhhch-HHHHHHHHHHHHhc------
Q 000166 159 FGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT---ILFEKMR-DTMKKELEVELVNV------ 227 (1974)
Q Consensus 159 FG~kvv~-~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~---~L~~~Lk-p~q~keLe~efek~------ 227 (1974)
||.=..+ =+.|++.+..-+...-..||.-|...++-+-.+.+.++... .|.++|- +.|..++...+.-+
T Consensus 164 ~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ 243 (1233)
T KOG1824|consen 164 FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQ 243 (1233)
T ss_pred hcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 9984444 35588888888899999999999999998888877543222 2223332 23444443333221
Q ss_pred CCC--------CCCcc--hhhhHH-h---HHh----hhhh----cccCCC---------------CCCCCCCCCCCCCCC
Q 000166 228 SGT--------ARPTR--KIRAEQ-D---KEL----GQEL----ISEDVG---------------PGPSEESTADVPPEI 270 (1974)
Q Consensus 228 ~~~--------~~P~R--~~Rs~q-~---~~~----~~~a----~~~~~~---------------~~~~~~~~~~~~~~i 270 (1974)
.|. ..|-- |.-+.+ + .++ .-++ .+.... =++.=..+ .++|-
T Consensus 244 ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd--~~eDe 321 (1233)
T KOG1824|consen 244 AGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD--TEEDE 321 (1233)
T ss_pred hcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC--Cccch
Confidence 111 01100 110000 0 000 0000 000000 00000000 00111
Q ss_pred CccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHH
Q 000166 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349 (1974)
Q Consensus 271 Dp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i 349 (1974)
|...+-|..|= + .++-|+.=++--||.|++|..-+..+++ ..-.-+.=|-.+...|-.+++|--=+|.+-.+...
T Consensus 322 d~~~~ed~eDd-e---~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~y 397 (1233)
T KOG1824|consen 322 DAMFLEDEEDD-E---QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAY 397 (1233)
T ss_pred hhhhhhccccc-h---hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHH
Confidence 11111111110 0 0245666778889999999999988654 33344555888888888888877777777766665
Q ss_pred HHHHHHhcc----------------ccc-----cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh--c--CCChhhh
Q 000166 350 GNLARGLRT----------------HFS-----GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--G--CLNLVDV 404 (1974)
Q Consensus 350 ~~LA~gLr~----------------~F~-----~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~--~--~~~l~~~ 404 (1974)
-.+-+--|. +|. .....++..|=..++||+..-+.....-|.++... + .-+++.+
T Consensus 398 i~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~sl 477 (1233)
T KOG1824|consen 398 IALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSL 477 (1233)
T ss_pred HHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhccccc
Confidence 555443331 122 22345566666778888877666555556655543 1 1235567
Q ss_pred HHHHHHHhhcCC--chhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhh----------------------------
Q 000166 405 VEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---------------------------- 454 (1974)
Q Consensus 405 ~e~i~~al~~Kn--P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l---------------------------- 454 (1974)
+..|.-.+.+|+ .+.|.+.+.|+.-.+..+++..+-+.++.+.|+++.++
T Consensus 478 vpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~ 557 (1233)
T KOG1824|consen 478 VPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPP 557 (1233)
T ss_pred chhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCC
Confidence 778888888888 68999999999999987765554443333444332222
Q ss_pred ----------------------CCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCC
Q 000166 455 ----------------------NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 512 (1974)
Q Consensus 455 ----------------------~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~ 512 (1974)
+|++.+||++|..|+|-++-.+|. .+...+...=++-.+++.+-+-..
T Consensus 558 ~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD-~l~~eL~~~L~il~eRl~nEiTRl--------- 627 (1233)
T KOG1824|consen 558 SSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD-FLGNELPRTLPILLERLGNEITRL--------- 627 (1233)
T ss_pred ccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHhchhHHH---------
Confidence 678888888888888888888882 233333222222222222211000
Q ss_pred CccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHH
Q 000166 513 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLE 592 (1974)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~E 592 (1974)
++++.. .... .. +..++.
T Consensus 628 -------------------~AvkAl--t~Ia-----------------------------------~S-----~l~i~l- 645 (1233)
T KOG1824|consen 628 -------------------TAVKAL--TLIA-----------------------------------MS-----PLDIDL- 645 (1233)
T ss_pred -------------------HHHHHH--HHHH-----------------------------------hc-----cceeeh-
Confidence 000000 0000 00 001110
Q ss_pred HHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHH
Q 000166 593 EIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEVINYLA 671 (1974)
Q Consensus 593 e~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~Pg-wkesNfqV~~k~leil~~la 671 (1974)
...+.++ =+++..-+....-+-|++-+..+.+.++...... ..+.+=-.|..-|+ ..||-.+|-+..+.+++.++
T Consensus 646 --~~~l~~i-l~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~-~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~ 721 (1233)
T KOG1824|consen 646 --SPVLTEI-LPELASFLRKNQRALRLATLTALDKLVKNYSDSI-PAELLEAVLVELPPLISESDLHVTQLAVAFLTTLA 721 (1233)
T ss_pred --hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0000001 1233344444445556665555555555432211 22333334445566 48898999888888888877
Q ss_pred HhcCCCCccchhhhccchh-------------------------------------hccccchhh--------------h
Q 000166 672 ATATKFPKKCVVLCLLGIS-------------------------------------ERVADIKTR--------------A 700 (1974)
Q Consensus 672 ~~~~~fs~~~~~~~l~~lv-------------------------------------eKlgD~K~r--------------~ 700 (1974)
...+..--..-..+++.++ +.+..++-. +
T Consensus 722 ~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA 801 (1233)
T KOG1824|consen 722 IIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIA 801 (1233)
T ss_pred hcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHH
Confidence 6433210000011111111 111111100 1
Q ss_pred HHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHH
Q 000166 701 HAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780 (1974)
Q Consensus 701 ~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi 780 (1974)
.....|+..|...+...+..-+......+-|-.++.=|+.-++++=..++. ..-..+-+.+.++ |+|+|..|+.||-
T Consensus 802 ~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~--s~~~e~~~~iiea-f~sp~edvksAAs 878 (1233)
T KOG1824|consen 802 KCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL--SPQNELKDTIIEA-FNSPSEDVKSAAS 878 (1233)
T ss_pred HHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC--CcchhhHHHHHHH-cCCChHHHHHHHH
Confidence 111122222221222222222222222222333333333333333222222 2223444455666 9999999999999
Q ss_pred HHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccc------c---cccCcCCCCCCCCCCCCccccc
Q 000166 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV------R---ASESTSSVSSGGSDGLPREDIS 851 (1974)
Q Consensus 781 ~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~------r---~~~~~~~~~~~~~d~lpRvDIs 851 (1974)
-.||.+-- |. +-.|| |-++.+|+.+ |.|+- + ..++ .+-..|-+|
T Consensus 879 ~ALGsl~v--gn-l~~yL----pfil~qi~sq-----------pk~QyLLLhSlkevi~~~s-------vd~~~~~v~-- 931 (1233)
T KOG1824|consen 879 YALGSLAV--GN-LPKYL----PFILEQIESQ-----------PKRQYLLLHSLKEVIVSAS-------VDGLKPYVE-- 931 (1233)
T ss_pred HHhhhhhc--Cc-hHhHH----HHHHHHHhcc-----------hHhHHHHHHHHHHHHHHhc-------cchhhhhHH--
Confidence 99998763 32 22333 4445555443 22210 0 0000 000111111
Q ss_pred cCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc--cchhHhHHHHHHHHHHHHHHhcChh
Q 000166 852 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMGPA 929 (1974)
Q Consensus 852 ~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl--~DsNk~lv~~al~ii~~lA~amG~~ 929 (1974)
+|=.-|.+.++...==+|.=--|=+.+++ .|.| ..|...|+.++ .++|-.....+ .+--.-+-=-++
T Consensus 932 -~IW~lL~k~cE~~eegtR~vvAECLGkL~-----l~ep---esLlpkL~~~~~S~a~~~rs~vvs--avKfsisd~p~~ 1000 (1233)
T KOG1824|consen 932 -KIWALLFKHCECAEEGTRNVVAECLGKLV-----LIEP---ESLLPKLKLLLRSEASNTRSSVVS--AVKFSISDQPQP 1000 (1233)
T ss_pred -HHHHHHHHhcccchhhhHHHHHHHhhhHH-----hCCh---HHHHHHHHHHhcCCCcchhhhhhh--eeeeeecCCCCc
Confidence 12222344455444333444334444443 2233 56899999988 56665543322 111111111346
Q ss_pred HHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC
Q 000166 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1974)
Q Consensus 930 ~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~ 1007 (1974)
...+.+..+..++..|.|--..||..|+.+++.++--=. ...++|++...|-+.. ..|+|+..=.. +.
T Consensus 1001 id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eT---kvrkelIreVe-----MG-- 1070 (1233)
T KOG1824|consen 1001 IDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSET---KVRKELIREVE-----MG-- 1070 (1233)
T ss_pred cCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhh---hhhHhhhhhhc-----cc--
Confidence 778899999999999999999999999999998764432 3566676666665432 25666654332 11
Q ss_pred cchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 1008 ~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
| +.+--|-.-|+||+|.+++-+++-.
T Consensus 1071 --------P-FKH~VDdgLd~RKaaFEcmytLLds 1096 (1233)
T KOG1824|consen 1071 --------P-FKHTVDDGLDLRKAAFECMYTLLDS 1096 (1233)
T ss_pred --------C-ccccccchHHHHHHHHHHHHHHHHh
Confidence 1 2334577889999999999887643
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=122.52 Aligned_cols=370 Identities=17% Similarity=0.198 Sum_probs=245.8
Q ss_pred hHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCc--cChhH----HHhhchhhhcCCCh-hHHHHHHHHHHHHHHhhC
Q 000166 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKR----ILKMLPELFDHQDQ-NVRASSKGLTLELCRWIG 200 (1974)
Q Consensus 128 ~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kv--v~~K~----ilk~l~~lf~h~dk-~VR~ea~~L~velyrwlG 200 (1974)
.+.+.+-.-...-.||-+..-...++....+|-... ...++ +-|+.|-.|.-..- .+-...-..+.+++--.-
T Consensus 102 ~~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~s~~t~~~~~s~rkm~~~~~d~~~~~l~~~~v~s~l~~~~~~n~ 181 (516)
T KOG2956|consen 102 KVCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGTSPNTKETKAAIRKMFPWMFDPRIENLLTPHVESSLCSLFALNN 181 (516)
T ss_pred HHHHHHhCHHHhcCCccccchhhhhhcccccccccCCCCCCCcchhhhhhccccccCchhhccccHHHHHHHHHHHHHHh
Confidence 455555555556679999999999999988876533 22333 55555555554332 233344455555555555
Q ss_pred CchhhHHHhhhchHHHHHHHHHHHHhcC--CCCCCcchhhhHHhHH----------hhhhhcccCCCCCCCCCCCCC---
Q 000166 201 KDPVKTILFEKMRDTMKKELEVELVNVS--GTARPTRKIRAEQDKE----------LGQELISEDVGPGPSEESTAD--- 265 (1974)
Q Consensus 201 ~~~lk~~L~~~Lkp~q~keLe~efek~~--~~~~P~R~~Rs~q~~~----------~~~~a~~~~~~~~~~~~~~~~--- 265 (1974)
.+ + +.+++.+.|.+..---+-.+... ++.++.+-.+...... ...+........ ...+....
T Consensus 182 a~-f-ss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~-~~~~~~~~~n~ 258 (516)
T KOG2956|consen 182 AD-F-SSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSAEKERFDSSNNKPSLPLSPPEEEKPGLGSTK-VNPEELRLSNE 258 (516)
T ss_pred hc-h-HhhhhccChhhhhhHHHHHHhhCcCCCCCCchhhhcccccccccccccCCChhhcccCCCccc-cCccccccccc
Confidence 55 5 45678888876432222222222 2223333111111000 000000000000 00000000
Q ss_pred -------CCCC-CCccccCCccccc-CCCCchhhhhhhcc-CChHHHHHHHHHHHHhhhc--CCCCCCChhHHHHHHHHH
Q 000166 266 -------VPPE-IDEYELVDPVDIL-TPLEKSGFWEGVKA-TKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKL 333 (1974)
Q Consensus 266 -------~~~~-iDp~dl~~pvdIl-~klpk~~f~~~l~s-~KWkeRkEALe~L~~L~~~--pKi~~~dy~dL~~~Lkk~ 333 (1974)
+..- -|+.|-..|..+. +.++ .+...++.. -+=.+|++||.+|..++-. --++...|++|.-.+=.+
T Consensus 259 ~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v-~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~Ev 337 (516)
T KOG2956|consen 259 TERLSRLEEYSTDDSMDQLTPNSVDQSALV-ADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEV 337 (516)
T ss_pred hhhhhhchhhccCcchhhCCCCCcchhHHH-HHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 0000 1123333343332 2333 355666654 4889999999999987643 344567799999999999
Q ss_pred hcc-hhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHh
Q 000166 334 ITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1974)
Q Consensus 334 l~D-sNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al 412 (1974)
++| .+-..-.+|+++|+.+++.-.+.|..|..+.+..+|+.-||.-..|...+.+++.....+ ..++ .++.-|...+
T Consensus 338 L~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las-~~P~-~~I~~i~~~I 415 (516)
T KOG2956|consen 338 LSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS-HLPL-QCIVNISPLI 415 (516)
T ss_pred HccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh-hCch-hHHHHHhhHH
Confidence 998 899999999999999999999999999999999999999999887776666665555544 2444 4455565555
Q ss_pred hcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHH
Q 000166 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492 (1974)
Q Consensus 413 ~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~k 492 (1974)
.+---+.-.-+++.++|.++..+...+..++.+++|.+++..+-+...||++|.-||.++...+|++.|.|+|++|...|
T Consensus 416 lt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk 495 (516)
T KOG2956|consen 416 LTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSK 495 (516)
T ss_pred hcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHH
Confidence 55444555577889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 000166 493 RNKLSEMIAGS 503 (1974)
Q Consensus 493 k~KI~e~~~~~ 503 (1974)
++-|+=|++.+
T Consensus 496 ~~LlqlYinRa 506 (516)
T KOG2956|consen 496 LNLLQLYINRA 506 (516)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-05 Score=101.03 Aligned_cols=350 Identities=20% Similarity=0.263 Sum_probs=218.1
Q ss_pred cCCCCH-HHHHHHHHHHHHHHHHcChhhhhh-hhHHHHHHHhhhhc----CChhhHHHHHHHHHHHHhhch------hhh
Q 000166 61 VADSNA-PVQDKALDALIAYLKAADADAGRY-AKEVCDAIAAKCLT----GRPKTVEKAQAVFMLWVELEA------VDV 128 (1974)
Q Consensus 61 v~DsN~-~aqEk~leal~~~l~~a~~~~~~~-~~~v~~~lveK~L~----~r~ktk~~a~e~~l~~vE~e~------~~~ 128 (1974)
+-|++. ..||-++.||..+.+-+....-+- ....+..++-|-|- .-|+.+..|+.|+-.||=+-. .+.
T Consensus 136 ~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~ 215 (885)
T KOG2023|consen 136 LLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDK 215 (885)
T ss_pred HhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHH
Confidence 455655 678999999988776642211110 11233444555442 479999999999988885532 245
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHhhCC-CccC-hhHHHhhchhhhcCCChhHHHHHHHHHHHHHHh-hCCchhh
Q 000166 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA-KIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVK 205 (1974)
Q Consensus 129 v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~-kvv~-~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrw-lG~~~lk 205 (1974)
++|.+....+.-+|-|...-..++.-+ -+|-+ +.+| +..|++++=..-.+.|-+|-=||-.+-..+.-- +-+..++
T Consensus 216 Fle~lFalanD~~~eVRk~vC~alv~L-levr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~ 294 (885)
T KOG2023|consen 216 FLEILFALANDEDPEVRKNVCRALVFL-LEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQ 294 (885)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHH-HHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHH
Confidence 556555555556665444433333332 34555 6665 788999999999999999999988775544311 2233455
Q ss_pred HHHhhhchHHHHHHH-----HHHHHh-cCC---------CCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCC
Q 000166 206 TILFEKMRDTMKKEL-----EVELVN-VSG---------TARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEI 270 (1974)
Q Consensus 206 ~~L~~~Lkp~q~keL-----e~efek-~~~---------~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~i 270 (1974)
++| ++|=|+.+.-. +--.-+ .+. ..+| |+-++.+. +.+...+ +++++-
T Consensus 295 p~l-~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkP-Rfhksk~~----------~~~~~~~-----~eDddd 357 (885)
T KOG2023|consen 295 PYL-DKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKP-RFHKSKEH----------GNGEDAD-----DEDDDD 357 (885)
T ss_pred HHH-HHHHHHHHccCccccccHHHhcCccccccCCchhhhccc-hhhhchhc----------cCccccc-----cccccc
Confidence 555 66666665321 111111 111 1233 55554432 1111111 111111
Q ss_pred CccccCCcccccCCCCchhhhhhhccCChHHHH---HHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHH
Q 000166 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERK---DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347 (1974)
Q Consensus 271 Dp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRk---EALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~ 347 (1974)
|.+| +.=....|--|| .+|+-|..+... .-.--++..||..+..-+=.|--.++=
T Consensus 358 De~D-----------------DdD~~~dWNLRkCSAAaLDVLanvf~~-----elL~~l~PlLk~~L~~~~W~vrEagvL 415 (885)
T KOG2023|consen 358 DEDD-----------------DDDAFSDWNLRKCSAAALDVLANVFGD-----ELLPILLPLLKEHLSSEEWKVREAGVL 415 (885)
T ss_pred cccc-----------------cccccccccHhhccHHHHHHHHHhhHH-----HHHHHHHHHHHHHcCcchhhhhhhhHH
Confidence 1111 111224688888 455555443211 113346778888888777788888889
Q ss_pred HHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHH
Q 000166 348 AIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1974)
Q Consensus 348 ~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L 427 (1974)
++|+||+|=.++|.+|...++|-++..+-|||+-||.- +|.+|......+
T Consensus 416 AlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsI-----------TCWTLsRys~wv------------------- 465 (885)
T KOG2023|consen 416 ALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSI-----------TCWTLSRYSKWV------------------- 465 (885)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeee-----------eeeeHhhhhhhH-------------------
Confidence 99999999999999999999999999999999999841 377776543322
Q ss_pred HHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000166 428 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1974)
Q Consensus 428 ~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1974)
++.. + .++++.++..+++.+-|++..|.+||+.+++++---.|++ +.+|++.+
T Consensus 466 ---~~~~-~---~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~I 518 (885)
T KOG2023|consen 466 ---VQDS-R---DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYI 518 (885)
T ss_pred ---hcCC-h---HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHH
Confidence 1111 1 2335777888899999999999999999999999999976 66777754
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.0011 Score=95.10 Aligned_cols=608 Identities=14% Similarity=0.126 Sum_probs=350.3
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhh-cCCCCC--CChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccc--
Q 000166 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-- 363 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~--~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y-- 363 (1974)
+.+-+.+.+=..+.+|...|..++. .+.... -+.| .+..|-+++. +.+..+.-.|+.+++.||.+ ...+..+
T Consensus 194 LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaG-aVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~-s~e~r~~Iv 271 (2102)
T PLN03200 194 LVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAG-AVKQLLKLLGQGNEVSVRAEAAGALEALSSQ-SKEAKQAIA 271 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHccCCChHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 5555566666677778777766543 232111 1222 2667777886 67788999999999999975 2233333
Q ss_pred hhhhHHHHHHHhcc---------CCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcC-CchhHHHHH---HHHHHH
Q 000166 364 SRFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VPLVRSLTL---NWVTFC 430 (1974)
Q Consensus 364 ~~~~l~~lLeklKE---------KK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~K-nP~vk~etl---~~L~r~ 430 (1974)
....+|++++-+.. .+..+++.+.-||-.++. ....++..+...+.+. .+.+-..++ .++.+.
T Consensus 272 ~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg----g~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 272 DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG----GMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC----CchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 23458888887752 345567777777776654 3344555555555432 222222333 333333
Q ss_pred HhhCChhHHhHhh--hhhHHHHHhhhCCCCHHH-HHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCC
Q 000166 431 IETSSKAAVLKVH--KDYVPICMECLNDGTPEV-RDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDV 507 (1974)
Q Consensus 431 l~~~~~~~~~~~~--k~~~~~l~k~l~Ds~~~V-R~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~ 507 (1974)
+.... .....+ ..+++.+++++..+++.+ .+.+.++|..+ +|...+...+.+-|. . +-+..++....
T Consensus 348 ~d~~~--~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl---~gN~~l~~~L~~~da-i-k~LV~LL~~~~--- 417 (2102)
T PLN03200 348 FDSSA--ESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL---YGNAYLSRKLNHAEA-K-KVLVGLITMAT--- 417 (2102)
T ss_pred cCCch--hhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHh---cCChHHHHHHHhccc-h-hhhhhhhccCC---
Confidence 33211 111111 246789999998887774 77777776442 333333333322110 0 01111111000
Q ss_pred CCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCC
Q 000166 508 ATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPS 587 (1974)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~ 587 (1974)
...+........ ...
T Consensus 418 ------------------------~evQ~~Av~aL~--------------------------------~L~--------- 432 (2102)
T PLN03200 418 ------------------------ADVQEELIRALS--------------------------------SLC--------- 432 (2102)
T ss_pred ------------------------HHHHHHHHHHHH--------------------------------HHh---------
Confidence 000000000000 000
Q ss_pred CCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCccchHHHHH
Q 000166 588 EMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQ 661 (1974)
Q Consensus 588 ~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~------~~~~~~Lvr~l~~~PgwkesNfqV~~ 661 (1974)
.-+.|-.+.....-.-+-++..|.+.+=..|..|+..+.....+.++. ......|+++|. ..++.++.
T Consensus 433 ~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~------s~~~~iqe 506 (2102)
T PLN03200 433 CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE------TGSQKAKE 506 (2102)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc------CCCHHHHH
Confidence 001122222222223356677777777777777776665433321110 122456676664 33677888
Q ss_pred HHHHHHHHHHHhcCCCCccch--hhhccchhhcc--ccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHH
Q 000166 662 QVIEVINYLAATATKFPKKCV--VLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSE 737 (1974)
Q Consensus 662 k~leil~~la~~~~~fs~~~~--~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae 737 (1974)
...-+|..++.. ..--+..+ .-+++.+++-+ ||.+.+..+..+|..++.... ..++.++... ..+.+|+++.-
T Consensus 507 eAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-~~~I~~Lv~L-Llsdd~~~~~~ 583 (2102)
T PLN03200 507 DSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-AATISQLTAL-LLGDLPESKVH 583 (2102)
T ss_pred HHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-hhHHHHHHHH-hcCCChhHHHH
Confidence 777777766532 11111222 12455555544 456788888888888876433 3455666654 68899999999
Q ss_pred HHHHHHHHHHHhcc-----CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000166 738 GILWMVSAVEDFGV-----SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1974)
Q Consensus 738 ~l~wl~~ai~eFG~-----~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~E 812 (1974)
++.-+..++.--.. .++..-.-|+.+.+. |.+.|+.++..|..+|..+...- ++....+ +++
T Consensus 584 aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~-~d~~~av----------v~a- 650 (2102)
T PLN03200 584 VLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSR-QDLCESL----------ATD- 650 (2102)
T ss_pred HHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCC-hHHHHHH----------HHc-
Confidence 99888776551111 111112456677777 89999999999998887666311 0000000 000
Q ss_pred HhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcc--cCCCC
Q 000166 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQP 890 (1974)
Q Consensus 813 F~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~an--krI~p 890 (1974)
+-|+ -++.-+.+.+-++|+|+--+|..+....+ ++..-
T Consensus 651 ---------------------------------------gaIp-PLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~ 690 (2102)
T PLN03200 651 ---------------------------------------EIIN-PCIKLLTNNTEAVATQSARALAALSRSIKENRKVSY 690 (2102)
T ss_pred ---------------------------------------CCHH-HHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0023 37777888899999999999999985221 11110
Q ss_pred CCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch
Q 000166 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 970 (1974)
Q Consensus 891 ~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~ 970 (1974)
.-...++.|..-|++.+..++..|+..++.|+..-.-..+-..-..+++++..|.+....+|+.|..+|-..+.+...+
T Consensus 691 -v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~ 769 (2102)
T PLN03200 691 -AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD 769 (2102)
T ss_pred -HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh
Confidence 1133577799999999999999999999999876532211122345899999999999999999999999998888876
Q ss_pred hhh-H---------HHHHHHhcccC-Ccch--HHHHHHHHHHHhccCCC-Cc------chhhhhhhHhhhccCCChHHHH
Q 000166 971 KMV-P---------YVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPASIAMTDKSSDVRK 1030 (1974)
Q Consensus 971 ~~~-~---------~i~~~L~~~~~-~p~~--R~e~l~wL~~~l~~~~~-~~------~~~~~~~p~~~~L~Dr~~dVRk 1030 (1974)
..+ . .+.+.|...+. +... =-+.+.||++.=.+... .+ +.-.-+.|++.||.+-+++|-+
T Consensus 770 ~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~ 849 (2102)
T PLN03200 770 DVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQD 849 (2102)
T ss_pred HHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHH
Confidence 644 2 35555653221 2221 34788899884222211 12 2234578899999999999999
Q ss_pred HHHHHHHHHHH
Q 000166 1031 AAEACIVEILR 1041 (1974)
Q Consensus 1031 aA~~~L~~~m~ 1041 (1974)
.|-++|..+.+
T Consensus 850 kai~il~~~~~ 860 (2102)
T PLN03200 850 KAIEILSRLCR 860 (2102)
T ss_pred HHHHHHHHHhc
Confidence 99999987754
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.0089 Score=86.32 Aligned_cols=796 Identities=15% Similarity=0.152 Sum_probs=419.4
Q ss_pred CcccccCCCCchhhhhhhccC--ChHHHHHHHHHHHHhhhcC---CCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 000166 277 DPVDILTPLEKSGFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGN 351 (1974)
Q Consensus 277 ~pvdIl~klpk~~f~~~l~s~--KWkeRkEALe~L~~L~~~p---Ki~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~ 351 (1974)
||....... ..+.+++.+. +=++|+.++-+|..+.+.. |..=++.++.+..|-..|.--+..+...|+.++..
T Consensus 7 ~~~~~~~~v--~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~n 84 (2102)
T PLN03200 7 DPDGTLASV--AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGV 84 (2102)
T ss_pred CccchHHHH--HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344444444 3688899866 7799999999999987533 22112234456666667753456666677777777
Q ss_pred HHHH--hccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-CC----C---hhhhHHHHHHHhhcCCc---h
Q 000166 352 LARG--LRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CL----N---LVDVVEDVKTSVKNKVP---L 418 (1974)
Q Consensus 352 LA~g--Lr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~-~~----~---l~~~~e~i~~al~~KnP---~ 418 (1974)
|+.- .+...- ....+|++++-|++-....++.+..+|..+...+ |- . -...++.+...+++.+. .
T Consensus 85 LS~~e~nk~~Iv--~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~ 162 (2102)
T PLN03200 85 LCKEEDLRVKVL--LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV 162 (2102)
T ss_pred HhcCHHHHHHHH--HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHH
Confidence 7643 222221 2689999999999999999999999999887531 00 0 12345666677776542 1
Q ss_pred hHHHHHHHHHHHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHH
Q 000166 419 VRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLS 497 (1974)
Q Consensus 419 vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~ 497 (1974)
++..+..-|...- .+.......++ ...+|.++..|.+.++.++..|+.+|..++...++ .....++ ..- -..+.
T Consensus 163 L~~~Av~AL~nLs-~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~~~aVIe-aGa--VP~LV 237 (2102)
T PLN03200 163 VEGLLTGALRNLC-GSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-SISKVLD-AGA--VKQLL 237 (2102)
T ss_pred HHHHHHHHHHHHh-cCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-HHHHHHH-CCC--HHHHH
Confidence 2222222332222 22211111112 34899999999999999999999888877655442 1111110 000 01111
Q ss_pred HHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 000166 498 EMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKL 577 (1974)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~ 577 (1974)
+++.... ...
T Consensus 238 ~LL~sg~--------------------------~~~-------------------------------------------- 247 (2102)
T PLN03200 238 KLLGQGN--------------------------EVS-------------------------------------------- 247 (2102)
T ss_pred HHHccCC--------------------------ChH--------------------------------------------
Confidence 2221000 000
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCC----c
Q 000166 578 TEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGW----S 653 (1974)
Q Consensus 578 ~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~Pgw----k 653 (1974)
-.|++- ..+..|.+.+...|-..++ ....+.|++++. .|.. .
T Consensus 248 ------------VRE~AA---------~AL~nLAs~s~e~r~~Iv~------------aGgIp~LI~lL~-sp~~e~~~~ 293 (2102)
T PLN03200 248 ------------VRAEAA---------GALEALSSQSKEAKQAIAD------------AGGIPALINATV-APSKEFMQG 293 (2102)
T ss_pred ------------HHHHHH---------HHHHHHhcCCHHHHHHHHH------------CCCHHHHHHHHh-Ccchhhhcc
Confidence 011111 1222233333333322111 012344555543 1221 2
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHH------HHHHHH-------hhchHhHHH
Q 000166 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKC------LTTFSE-------AVGPGFIFE 720 (1974)
Q Consensus 654 esNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~------L~~~aE-------~~~p~~V~~ 720 (1974)
+.|-..+....-+|..++. .. ..+++.+.+-+...+......++ ++.+++ .+.+.-+..
T Consensus 294 ~~~~~Lqe~AvwALsNIcg---g~-----~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~ 365 (2102)
T PLN03200 294 EFAQALQENAMGALANICG---GM-----SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQ 365 (2102)
T ss_pred ccchHHHHHHHHHHHHHhC---Cc-----hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHH
Confidence 3344444444444443332 11 12233333332222222211221 111111 122222333
Q ss_pred HHHHhhhhcCChhh-H---HHHH------HHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhh
Q 000166 721 RLYKIMKDHKNPKV-L---SEGI------LWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFV 790 (1974)
Q Consensus 721 ~l~~~~~~~KnPKv-~---ae~l------~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~ 790 (1974)
.+.. +.+||+|.. + .++| ..+...|.+-|. ++.+-.+ |..++..+++.++..|..+-..
T Consensus 366 ~LV~-Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~da--------ik~LV~L-L~~~~~evQ~~Av~aL~~L~~~- 434 (2102)
T PLN03200 366 ILVK-LLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEA--------KKVLVGL-ITMATADVQEELIRALSSLCCG- 434 (2102)
T ss_pred HHHH-HhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccc--------hhhhhhh-hccCCHHHHHHHHHHHHHHhCC-
Confidence 4444 357888886 4 3343 233444444332 2334445 7788899999998887655432
Q ss_pred CchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHH
Q 000166 791 GPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 870 (1974)
Q Consensus 791 G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~R 870 (1974)
++..+..+.+ .+ .-+-|+.-+++.+=..|
T Consensus 435 ~~e~~~aIi~------------------~g---------------------------------gIp~LV~LL~s~s~~iQ 463 (2102)
T PLN03200 435 KGGLWEALGG------------------RE---------------------------------GVQLLISLLGLSSEQQQ 463 (2102)
T ss_pred CHHHHHHHHH------------------cC---------------------------------cHHHHHHHHcCCCHHHH
Confidence 1223332211 00 01346677777777788
Q ss_pred HHHHHHHHHHHHHc-ccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh--hhhhHHHHHHhcc
Q 000166 871 LESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGD 947 (1974)
Q Consensus 871 kEaLe~v~~il~~a-nkrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~--k~l~~~il~~l~D 947 (1974)
..|+..+..|-... ..+..--. ...++.|-.-|...+..+...|+.+++.|+.. .......+ -..+|++++.|.+
T Consensus 464 ~~A~~~L~nLa~~ndenr~aIie-aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~s 541 (2102)
T PLN03200 464 EYAVALLAILTDEVDESKWAITA-AGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKN 541 (2102)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhC
Confidence 88888887776321 01111111 23566777777778889999999999999873 33444444 3689999999999
Q ss_pred CchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC------cchhhhhhhHhhhc
Q 000166 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF------PDAAHLLKPASIAM 1021 (1974)
Q Consensus 948 ~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~------~~~~~~~~p~~~~L 1021 (1974)
....+++.+..+|....... =...++.+...|.++ ++..+.-++.=|..-+...... ......+.+++..|
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~-d~~~I~~Lv~LLlsd--d~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL 618 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTA-DAATISQLTALLLGD--LPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL 618 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhcc-chhHHHHHHHHhcCC--ChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH
Confidence 99999998888888775432 223334444445432 2333333333221111100000 00011233344444
Q ss_pred cCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000166 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNR 1101 (1974)
Q Consensus 1022 ~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1101 (1974)
+..+.++++.|..+|..+.
T Consensus 619 ~sgs~~ikk~Aa~iLsnL~------------------------------------------------------------- 637 (2102)
T PLN03200 619 SSSKEETQEKAASVLADIF------------------------------------------------------------- 637 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHh-------------------------------------------------------------
Confidence 4444555554444443322
Q ss_pred CCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcc
Q 000166 1102 AISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLS 1181 (1974)
Q Consensus 1102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~ 1181 (1974)
.-+.++++++ ...-.=+-++..|.+
T Consensus 638 ----------------------------------------------------a~~~d~~~av---v~agaIpPLV~LLss 662 (2102)
T PLN03200 638 ----------------------------------------------------SSRQDLCESL---ATDEIINPCIKLLTN 662 (2102)
T ss_pred ----------------------------------------------------cCChHHHHHH---HHcCCHHHHHHHHhc
Confidence 1222222221 111122233334444
Q ss_pred cCHHHHHHHHHHHHHhcCCCh----hhhhH--hHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHh
Q 000166 1182 TDFKKQVDGLEMLQKALPSIR----KDIIE--VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAA 1255 (1974)
Q Consensus 1182 ~Dfk~~l~al~~l~~~l~~~~----~~~i~--~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~ 1255 (1974)
.+|.-.-++.-.|........ ..++. .+-.+++++ .+.+..+...+++.|..++..-... .+.=..
T Consensus 663 ~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL----~~~d~~v~e~Al~ALanLl~~~e~~----~ei~~~ 734 (2102)
T PLN03200 663 NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA----KSSSIEVAEQAVCALANLLSDPEVA----AEALAE 734 (2102)
T ss_pred CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH----hCCChHHHHHHHHHHHHHHcCchHH----HHHHhc
Confidence 444333222222222111111 11111 133344443 4567777778777777555432111 111223
Q ss_pred hhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchH----------HHHHhhhccCChhh--HhHHHHHHHHHHH-hh
Q 000166 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTL----------PYILEGLRSKNNRT--RIECVDLVGFLID-HH 1322 (1974)
Q Consensus 1256 ~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf----------~~l~~glksKN~r~--R~EcL~el~~li~-~~ 1322 (1974)
-++|.|+.=+.+..+.+|+..-..+-++|.-+|...+| .-|++-|++=|.+. -.|-||.|+.+.. ++
T Consensus 735 ~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~ 814 (2102)
T PLN03200 735 DIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKG 814 (2102)
T ss_pred CcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcc
Confidence 45899998888888889999999999999999988865 22345567777655 4478999998877 45
Q ss_pred cCccccc--------cchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhccC---CHHHHhhHHHHHHHh
Q 000166 1323 GAEISGQ--------LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL---TDAQKSMLDDRFKWK 1388 (1974)
Q Consensus 1323 G~~v~~~--------~Kal~~iA~~i~drD~~VR~AALn~l~~~Y~~~Gd~v~k~vg~l---s~k~~smLeer~kr~ 1388 (1974)
|.+...| +-.|.-+-.++++-.|.|-..||..|. .+++|+- ..+|++ .++-.+-|-.|+=.+
T Consensus 815 ~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 815 GANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILS---RLCRDQP-VVLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred cCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHH---HHhccCh-hHHHHHHhcccchHHHHHHHHhhc
Confidence 5443212 245677888889999999999999998 5566652 223332 466677788887665
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.8e-07 Score=113.22 Aligned_cols=305 Identities=18% Similarity=0.177 Sum_probs=213.7
Q ss_pred hccCchhHHHHHHHHHHHHHhhCCCcc-ChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHH
Q 000166 138 KNKVAKAVVPAIDVMFQALSEFGAKII-PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1974)
Q Consensus 138 ~~K~PKvvaaai~~l~~~l~~FG~kvv-~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q 216 (1974)
.+..|.+-..-+.+...++.+-|-+.+ +++++...- +=...+-++|+....+.+.+-+++-.. +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~--l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~- 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQR--LNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI- 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHH--hccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh-
Confidence 566677777777788888888887543 444432210 001128899999888888877666421 11211
Q ss_pred HHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhcc
Q 000166 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA 296 (1974)
Q Consensus 217 ~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s 296 (1974)
+-+|..|+.. .+|+...+..-..- -.+ ..... . -.+...++ +...+.+++
T Consensus 96 -~~~~~~~~~~---~tps~~~q~~~~~~-l~~-~~~~~--------~-----------~~~~~~~l-----~~l~~ll~~ 145 (569)
T KOG1242|consen 96 -SIIEILLEEL---DTPSKSVQRAVSTC-LPP-LVVLS--------K-----------GLSGEYVL-----ELLLELLTS 145 (569)
T ss_pred -HHHHHHHHhc---CCCcHHHHHHHHHH-hhh-HHHHh--------h-----------ccCHHHHH-----HHHHHHhcc
Confidence 3344445443 23332221110000 000 00000 0 00111222 345677889
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhccccccchhhhHHHHHHHh
Q 000166 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1974)
Q Consensus 297 ~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~-A~~~i~~LA~gLr~~F~~y~~~~l~~lLekl 375 (1974)
.+-.+|+.+-.++..+....=+..--=..++..|-+-+.|-|-..... ++-+.......||+.|+||...++|.+|.+|
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~ 225 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF 225 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh
Confidence 999999999999888877665555333467888999999998888885 8888999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCh---hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHh
Q 000166 376 KEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452 (1974)
Q Consensus 376 KEKK~~V~eA~~~aLda~~~~~~~~l---~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k 452 (1974)
+|+=+.||+|+..|..+++. |++. ..++..++..+....++-|...+..|. ++..+-+..+..++..++|.+..
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~--~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMR--CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSE 302 (569)
T ss_pred hccchhhhHHHHHHHHHHHH--hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHH
Confidence 99999999999999999998 5663 455666666666668888888887776 77777666776777899999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000166 453 CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1974)
Q Consensus 453 ~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~ 486 (1974)
.|.|+.++||++|.+||-.+-.++....+.+++.
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip 336 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIP 336 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999999999999988888776666654
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-05 Score=97.27 Aligned_cols=550 Identities=16% Similarity=0.196 Sum_probs=316.4
Q ss_pred HHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc-ccchhhhHHHHHHHhccCCHH
Q 000166 303 KDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF-SGSSRFLLPVLLEKLKEKKPT 381 (1974)
Q Consensus 303 kEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F-~~y~~~~l~~lLeklKEKK~~ 381 (1974)
=|.|..|..++..+-.... ..-+.+|.|+..|| |.-+-.+| .+...+++|.+|+-|+---|.
T Consensus 127 pelLp~L~~~L~s~d~n~~--EgA~~AL~KIcEDs---------------a~~lds~~~~rpl~~mipkfl~f~~h~spk 189 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTC--EGAFGALQKICEDS---------------AQFLDSDVLTRPLNIMIPKFLQFFKHPSPK 189 (885)
T ss_pred hhHHHHHHHHhcCCccccc--chhHHHHHHHHhhh---------------HHHHhhhcccCchHHhHHHHHHHHhCCChh
Confidence 4566666665554443210 01234455555444 33333322 356889999999999999999
Q ss_pred HHHHHHHHHHHHHHhc----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCC
Q 000166 382 VAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1974)
Q Consensus 382 V~eA~~~aLda~~~~~----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1974)
+|..+..|++.+.-.. ...++.++|.+..--.+.+|.||.+...=|.-.++-.+. .+.+.+..++..++....|.
T Consensus 190 iRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~ 268 (885)
T KOG2023|consen 190 IRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDV 268 (885)
T ss_pred HHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCc
Confidence 9999999998765321 134667777777666788899999999888888775543 23345578888999999999
Q ss_pred CHHHHHHHHHHHHHHHHH-hChhHHHHHhhcCCHHHHHHHH-----HHHhcCCCCCCCCCCCccccCCCCCCCCCCCcch
Q 000166 458 TPEVRDAAFSVLAAIAKS-VGMRPLERSIEKLDDVRRNKLS-----EMIAGSGGDVATGTSSARVQTSGGSVPSVEASES 531 (1974)
Q Consensus 458 ~~~VR~aA~~~l~~lmk~-~Ge~~l~~~l~~Ld~~kk~KI~-----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1974)
+++|-=.|+|..-++... +-...+.+|+.+|=|.-..+.. ..+-+.. ..-..++ -++
T Consensus 269 dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~------eeD~~vp----------Dre- 331 (885)
T KOG2023|consen 269 DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNN------EEDESVP----------DRE- 331 (885)
T ss_pred chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCc------cccccCC----------chh-
Confidence 999999999988887754 3356788888876554332210 0110000 0000000 000
Q ss_pred hhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhh
Q 000166 532 SFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK 611 (1974)
Q Consensus 532 ~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~ 611 (1974)
.-.+|-=. |+...+.+..+ +.+|..+.+...+|+
T Consensus 332 -----------eDIkPRfh----------ksk~~~~~~~~--------~~eDdddDe~DDdD~----------------- 365 (885)
T KOG2023|consen 332 -----------EDIKPRFH----------KSKEHGNGEDA--------DDEDDDDDEDDDDDA----------------- 365 (885)
T ss_pred -----------hhccchhh----------hchhccCcccc--------ccccccccccccccc-----------------
Confidence 00111100 11111111100 112222333333333
Q ss_pred hccHHHHHHH---HHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccc
Q 000166 612 SAVWKERLEA---ISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLG 688 (1974)
Q Consensus 612 s~~WK~RL~a---~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~ 688 (1974)
.++|.-|.-. +.-+...+.. .-.++++=.|..+- ..-+-.|...++=++.++|+.|-.+.-.....++|.
T Consensus 366 ~~dWNLRkCSAAaLDVLanvf~~-----elL~~l~PlLk~~L--~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~ 438 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLANVFGD-----ELLPILLPLLKEHL--SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPF 438 (885)
T ss_pred cccccHhhccHHHHHHHHHhhHH-----HHHHHHHHHHHHHc--CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHH
Confidence 2478777643 3333322222 12333433332221 112334556666678888887655555555678888
Q ss_pred hhhccccch--hhhHHHHHHHHHHHh---hch----HhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccch-Hh
Q 000166 689 ISERVADIK--TRAHAMKCLTTFSEA---VGP----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL-KD 758 (1974)
Q Consensus 689 lveKlgD~K--~r~~a~e~L~~~aE~---~~p----~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~-K~ 758 (1974)
++.-+.|.| +|...+=+|..|+-= .++ ..|++.++..+ =.+|-|||.++|.-++...++-|-..|+. ..
T Consensus 439 l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l-lD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~ 517 (885)
T KOG2023|consen 439 LLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL-LDSNKKVQEAACSAFATLEEEAGEELVPYLEY 517 (885)
T ss_pred HHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 888888877 677666667766641 122 23444444443 36788888888888888888888765552 33
Q ss_pred HHHHHhhh--cCCCccHHHHHHHHHHHHHHHhhhCchh--HhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCc
Q 000166 759 LIDFCKDT--GLQSSAAATRNATIKLLGALHKFVGPDI--KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (1974)
Q Consensus 759 lI~~~k~~--~L~~sN~~VR~aAi~Ll~~ly~~~G~~l--~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~ 834 (1974)
+++.+-.+ ..++.|=-|-=- .+|++--.+|..| ..|++=+=|.|+ +.|+..+.+.
T Consensus 518 IL~~l~~af~kYQ~KNLlILYD---AIgtlAdsvg~~Ln~~~YiqiLmPPLi----~KW~~lsd~D-------------- 576 (885)
T KOG2023|consen 518 ILDQLVFAFGKYQKKNLLILYD---AIGTLADSVGHALNKPAYIQILMPPLI----EKWELLSDSD-------------- 576 (885)
T ss_pred HHHHHHHHHHHHhhcceehHHH---HHHHHHHHHHHhcCcHHHHHHhccHHH----HHHHhcCccc--------------
Confidence 33332221 012222222111 1344444455554 233443333333 3444443321
Q ss_pred CCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHH
Q 000166 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914 (1974)
Q Consensus 835 ~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~ 914 (1974)
-|++|=-+..+.|...+-..+--=.|-+=.-...-+++-++.- -+.+...+++.+ .+..+..
T Consensus 577 -------KdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~-~~~~~~~~~~~p----------dkdfiI~ 638 (885)
T KOG2023|consen 577 -------KDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLL-AKVQQDPTVEAP----------DKDFIIV 638 (885)
T ss_pred -------chHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHH-HhccCCccccCC----------CcceEEE
Confidence 2556666655555555555555556666555555555433211 122332234432 2566778
Q ss_pred HHHHHHHHHHhcChhHHhhh--hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 915 TLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 915 al~ii~~lA~amG~~~~k~~--k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
+|..++.||+|+|.+.+..+ ..++.-++.|+.|.-+-||+.+-+-|.-....| .+.+.|.+.+.|.
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c-~~~v~p~~~~fl~ 706 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKAC-FEHVIPNLADFLP 706 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHhccchHHHHHH
Confidence 99999999999999999863 358888999999999999999999999888888 6777776666654
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00067 Score=86.13 Aligned_cols=569 Identities=19% Similarity=0.227 Sum_probs=320.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcC
Q 000166 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (1974)
Q Consensus 336 DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~K 415 (1974)
|-........-++|..||++-|=.| .+..|=--+--+-.-||+-...|.-.++.. +.+..++.-+...-++|
T Consensus 452 ded~yar~egreIisnLakaaGla~------mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLAT------MISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhHH------HHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 3344445556667776666543221 222222233445566777777777767664 78888888777777766
Q ss_pred -CchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh---hHHHHHhhcCCH-
Q 000166 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDD- 490 (1974)
Q Consensus 416 -nP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge---~~l~~~l~~Ld~- 490 (1974)
..+-|--..+.+...-.-...+.+ +.++.++.++-++|.|.+..||--++-+|.++....|. +.|...+.-|-.
T Consensus 524 kSwqaRhTgIkivqqIail~Gcsvl-phl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCSVL-PHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcchhh-hhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 688886655554443222233333 45688999999999999999999999999999999873 333333332211
Q ss_pred HH--HHH-HHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000166 491 VR--RNK-LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKD 567 (1974)
Q Consensus 491 ~k--k~K-I~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~ 567 (1974)
++ +.| +..+++.-+..-+-.- ++-. .=-.+.- +.--.+- .+.
T Consensus 603 ir~hrgk~laafLkAigyliplmd--------------~eya-~yyTrev---mlil~rE--------f~s--------- 647 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMD--------------AEYA-SYYTREV---MLILIRE--------FGS--------- 647 (1172)
T ss_pred HHHccChHHHHHHHHHhhcccccc--------------HHHH-HHhHHHH---HHHHHHh--------hCC---------
Confidence 11 111 1111211110000000 0000 0000000 0000000 000
Q ss_pred CCCCcccccCCCCCCCCCCCCCCH------HHHHHHH---hccCcHhHHHhhhhccHHHHHHH----HHHHHHHHHhhhc
Q 000166 568 GSGKQETSKLTEAPEDVEPSEMSL------EEIESRL---GSLIPADTVGQLKSAVWKERLEA----ISSLRQQVEAVQN 634 (1974)
Q Consensus 568 ~~~~~~~s~~~~~~~~~~~~~~s~------Ee~e~~~---~~l~~~~i~~~L~s~~WK~RL~a----~E~l~~~v~~~~~ 634 (1974)
+ ..+|-. +.|.+.- ..++..|++.-++.+=|-.|+++ +..+.+.--+.-.
T Consensus 648 ------------P-----DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~ 710 (1172)
T KOG0213|consen 648 ------------P-----DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA 710 (1172)
T ss_pred ------------C-----hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH
Confidence 0 000000 0000000 12566788889999999999987 3333222111111
Q ss_pred cchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC--CCCccchhhhccchhhccccchhhhHHHHHHHHHHHh
Q 000166 635 LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA 712 (1974)
Q Consensus 635 ~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~--~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~ 712 (1974)
--.+.+++-|.+. .++|-|-|--+.+.+.+..++.+.+ .|..+.....+.+ +|.+|.|-
T Consensus 711 KvG~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidg----------------il~Afqeq 771 (1172)
T KOG0213|consen 711 KVGSDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDG----------------ILYAFQEQ 771 (1172)
T ss_pred HhCchHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH----------------HHHHHHhc
Confidence 1123455556554 4799999988888888888777643 2333333333333 55666665
Q ss_pred hchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCCccHHHHHHHHHHHHHH-----
Q 000166 713 VGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGAL----- 786 (1974)
Q Consensus 713 ~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~l----- 786 (1974)
+.-+-|+- +.+....++||..+=+ +..++--.... |.|.-|.||..|..|++.+
T Consensus 772 tt~d~vml-------------------~gfg~V~~~lg~r~kpylpqi~stiL~r-Lnnksa~vRqqaadlis~la~Vlk 831 (1172)
T KOG0213|consen 772 TTEDSVML-------------------LGFGTVVNALGGRVKPYLPQICSTILWR-LNNKSAKVRQQAADLISSLAKVLK 831 (1172)
T ss_pred ccchhhhh-------------------hhHHHHHHHHhhccccchHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHH
Confidence 44433322 2233344555652111 12333333444 7777777887777776653
Q ss_pred -------HhhhCchhHhhhhcchHHHHHHHHHHHhcCCC-CCCCCCccccccccCcCCCCCCCCCC-CCccccccCCcHH
Q 000166 787 -------HKFVGPDIKGFLADVKPALLSALDAEYEKNPF-EGTVVPKKTVRASESTSSVSSGGSDG-LPREDISGKFTPT 857 (1974)
Q Consensus 787 -------y~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~-~~~p~p~R~~r~~~~~~~~~~~~~d~-lpRvDIs~kit~~ 857 (1974)
-.|+|--|..+|+.+-|..|-.|-.-.--+-. -|- .-. -|--||.+.|||-
T Consensus 832 tc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm--------------------~km~pPi~dllPrltPI 891 (1172)
T KOG0213|consen 832 TCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGM--------------------TKMTPPIKDLLPRLTPI 891 (1172)
T ss_pred hccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccc--------------------cccCCChhhhcccchHh
Confidence 34566667777766666554444333322110 000 001 1334666668874
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH---HHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000166 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG---GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1974)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~---aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1974)
| .++-=|+--..++=|..|...+.-++.+- |-++ .|-.-|+--||-+-..|.+..|.||.+.||.
T Consensus 892 L----knrheKVqen~IdLvg~IadrgpE~v~aR---EWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----- 959 (1172)
T KOG0213|consen 892 L----KNRHEKVQENCIDLVGTIADRGPEYVSAR---EWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----- 959 (1172)
T ss_pred h----hhhHHHHHHHHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH-----
Confidence 4 44555666777888888887543333331 2222 2333445679999999999999999999974
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcc-hHHHHHHHHHHHhccCCCCcchhhh
Q 000166 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE-GRKDLFDWLSKQLTGLSGFPDAAHL 1013 (1974)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~-~R~e~l~wL~~~l~~~~~~~~~~~~ 1013 (1974)
-++..++..|+-+.-+.|.+..-++-.+.+.||.=.++|.+..-...|..|.+ |=--.+.|+-++..++. .+....
T Consensus 960 -dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigems--kdYiya 1036 (1172)
T KOG0213|consen 960 -DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS--KDYIYA 1036 (1172)
T ss_pred -HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh--hhHHHH
Confidence 46777888888899999999999999999999988888866655554533221 22334455656554443 466667
Q ss_pred hhh-HhhhccCCChHHHHHHHHHHHHH
Q 000166 1014 LKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 1014 ~~p-~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
+.| +-..|+||++--|.-|..++-.+
T Consensus 1037 v~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1037 VTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred hhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 777 44589999999999888766444
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0003 Score=87.68 Aligned_cols=279 Identities=15% Similarity=0.174 Sum_probs=203.9
Q ss_pred cchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-----
Q 000166 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----- 968 (1974)
Q Consensus 894 geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g----- 968 (1974)
.++++-|+.|+.+.|.+.-+--+.++..+=..=+-.|-.|.--++++++..|+|+-..||+-+-.+|+.+....-
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 788999999999999999999999999998888888999999999999999999999999999999998887753
Q ss_pred --chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC--cchhhhhhhHhhhccCCCh-HHHHHHHHHHHHHHHhc
Q 000166 969 --LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSS-DVRKAAEACIVEILRAG 1043 (1974)
Q Consensus 969 --l~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~--~~~~~~~~p~~~~L~Dr~~-dVRkaA~~~L~~~m~~~ 1043 (1974)
++.+++.+..-+.++ +|+.+.-++.|+.+.+.-.+.. +-...++..+.-|+.|.-. ..+..|+.+-+.+|+.+
T Consensus 246 ~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 233333333333333 6889999999999988665542 2344556668889988877 58888888777777766
Q ss_pred CHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchh
Q 000166 1044 GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQD 1123 (1974)
Q Consensus 1044 G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1123 (1974)
+.+.-... ++ ...
T Consensus 324 s~~~~~~~---id---~~~------------------------------------------------------------- 336 (675)
T KOG0212|consen 324 SSERLKEE---ID---YGS------------------------------------------------------------- 336 (675)
T ss_pred hhhhhccc---cc---hHH-------------------------------------------------------------
Confidence 54432211 00 000
Q ss_pred hhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChh
Q 000166 1124 FAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRK 1203 (1974)
Q Consensus 1124 ~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~ 1203 (1974)
-++- +..++++..-..++++++-+.-.....+.
T Consensus 337 -----------------------------------ii~v------------l~~~l~~~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 337 -----------------------------------IIEV------------LTKYLSDDREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred -----------------------------------HHHH------------HHHHhhcchHHHHHHHHHHHHHHHhhCcc
Confidence 1111 12223333344577777777777666777
Q ss_pred hhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHH
Q 000166 1204 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQI 1283 (1974)
Q Consensus 1204 ~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~ 1283 (1974)
.++...|=||--+-.-+.|+.-.|+.+.|+++.++..-=...+| --|+-.|++-.-+-+--++.+=-=|+|++
T Consensus 370 ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~-------~~fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 370 QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL-------RKFLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH-------HHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 77776777777776778999999999999999877655444444 56777777777665545666666799999
Q ss_pred hhccCccchHHH
Q 000166 1284 VNFYSATKTLPY 1295 (1974)
Q Consensus 1284 ~~vyp~skvf~~ 1295 (1974)
|...-+.+||.-
T Consensus 443 C~lL~aE~IYr~ 454 (675)
T KOG0212|consen 443 CLLLNAERIYRS 454 (675)
T ss_pred HHHhCHHHHHHH
Confidence 999999999987
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0014 Score=85.45 Aligned_cols=378 Identities=18% Similarity=0.166 Sum_probs=227.5
Q ss_pred hhhhccC--ChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 291 WEGVKAT--KWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 291 ~~~l~s~--KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
-+-+++. +=++|++++..|.-+.. -. |...+.-.+-+.+...|..+-.++-=.+..++.. =......+
T Consensus 10 ~~~~~~~~~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~----~~~~~~l~ 80 (526)
T PF01602_consen 10 AKILNSFKIDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHE----DPELLILI 80 (526)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT----SHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc----chhHHHHH
Confidence 3334444 67789999999766432 11 2233344444455555544333333222222221 11247788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhh-h
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-Y 446 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~-~ 446 (1974)
++.+..-+.+..+.+|..+..+|-.+... .-.+.+...|...+.|++|-||..++.-+.+.+...+.. +.. +
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-----~~~~~ 153 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-----VEDEL 153 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----HHGGH
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----HHHHH
Confidence 99999999999999999888888887643 335567788889999999999999999999999875332 233 7
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh---hHHHHH-------hhcCCHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000166 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERS-------IEKLDDVRRNKLSEMIAGSGGDVATGTSSARV 516 (1974)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge---~~l~~~-------l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~ 516 (1974)
++.+.+++.|+++.|+-+|..++..+ +.-.. ..+..+ +...++--.-++-.++....
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~------------ 220 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA------------ 220 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST------------
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc------------
Confidence 99999999999999999999999888 21111 111111 12233333333333332210
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHH
Q 000166 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1974)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~ 596 (1974)
...+++...
T Consensus 221 -----------------------------------------------------------------------~~~~~~~~~ 229 (526)
T PF01602_consen 221 -----------------------------------------------------------------------PMEPEDADK 229 (526)
T ss_dssp -----------------------------------------------------------------------SSSHHHHHH
T ss_pred -----------------------------------------------------------------------cCChhhhhH
Confidence 001111110
Q ss_pred HHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000166 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1974)
Q Consensus 597 ~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~ 676 (1974)
..+-+.+...|.++++-.+++++.-+...-....-.....+.+++++. =+|.| +.--+++.+..++.....
T Consensus 230 ---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~----s~~~n--vr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 230 ---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS----SSDPN--VRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT----SSSHH--HHHHHHHHHHHHCCHCHH
T ss_pred ---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh----cccch--hehhHHHHHHHhhcccch
Confidence 122245567777999999999999887443332212233455666653 13444 445577777776654311
Q ss_pred CCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccch
Q 000166 677 FPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL 756 (1974)
Q Consensus 677 fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~ 756 (1974)
+-. .....+ .++..--|.-+|..+-++|..++.......|+.++++++.+...+.++.+++.-++.+...|. -+.
T Consensus 301 ~v~-~~~~~~-~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~---~~~ 375 (526)
T PF01602_consen 301 AVF-NQSLIL-FFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP---PDA 375 (526)
T ss_dssp HHG-THHHHH-HHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG---SSH
T ss_pred hhh-hhhhhh-heecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC---chH
Confidence 111 111111 222334455678899999999999999999999999997566688899999999999988883 344
Q ss_pred HhHHHHHhhhcCCCccHHHHHHHHHHH
Q 000166 757 KDLIDFCKDTGLQSSAAATRNATIKLL 783 (1974)
Q Consensus 757 K~lI~~~k~~~L~~sN~~VR~aAi~Ll 783 (1974)
+..++.+-+. +...+..|+..++..+
T Consensus 376 ~~~v~~l~~l-l~~~~~~~~~~~~~~i 401 (526)
T PF01602_consen 376 EWYVDTLLKL-LEISGDYVSNEIINVI 401 (526)
T ss_dssp HHHHHHHHHH-HHCTGGGCHCHHHHHH
T ss_pred HHHHHHHHHh-hhhccccccchHHHHH
Confidence 5555655555 4444444444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.9e-05 Score=107.18 Aligned_cols=242 Identities=19% Similarity=0.198 Sum_probs=164.4
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhC--chhH
Q 000166 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (1974)
Q Consensus 718 V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G--~~l~ 795 (1974)
.++.|++.+ ++.+|.||..++.+|... |- ...++.+..+ |.+.|+.||.+|+..|+.+-.... +.|.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 455677664 799999999999998764 32 3456666677 999999999999999876622111 1223
Q ss_pred hhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHH
Q 000166 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1974)
Q Consensus 796 ~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe 875 (1974)
..|++-.|-.....=.-+.... ..-+..|+..+.|++|-+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~----------------------------------~~~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALR----------------------------------AGDAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhc----------------------------------cCCHHHHHHHhcCCCHHHHHHHHH
Confidence 3332222211111111111100 000235778899999999999999
Q ss_pred HHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHH
Q 000166 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (1974)
Q Consensus 876 ~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~a 955 (1974)
++..+= + ..+|...+.|.|.-|...++..++.+...-. ..++.++..++|..+.||.+
T Consensus 737 aL~~~~-------------~-~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD-------------D-VESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc-------------C-cHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHH
Confidence 987531 1 2356678999999998888887776644311 12677888999999999999
Q ss_pred HHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHH
Q 000166 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1974)
Q Consensus 956 a~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~ 1035 (1974)
|+.+|..+... ....+.+..+|.++ ++.+|.++..-|.+ +.. ...+.+++.+|.|.+.+||++|-.+
T Consensus 795 A~~aLg~~g~~---~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~----l~~----~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGCP---PDDVAAATAALRAS--AWQVRQGAARALAG----AAA----DVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCCc---chhHHHHHHHhcCC--ChHHHHHHHHHHHh----ccc----cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999877432 23345677888865 57889988877753 221 2344678888999999999999999
Q ss_pred HHHH
Q 000166 1036 IVEI 1039 (1974)
Q Consensus 1036 L~~~ 1039 (1974)
|+.+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9885
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00016 Score=91.91 Aligned_cols=310 Identities=15% Similarity=0.184 Sum_probs=201.1
Q ss_pred chhhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcCCC-hhHHHHHHHHHHHHHHhhCCc
Q 000166 124 EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD-QNVRASSKGLTLELCRWIGKD 202 (1974)
Q Consensus 124 e~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~~K~ilk~l~~lf~h~d-k~VR~ea~~L~velyrwlG~~ 202 (1974)
.+.+.+.+.+.+.++.=.-.-...+...+...++.+|...+..-.++..+-+...+.+ ...|+.+.--....+..+|+.
T Consensus 130 ~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~ 209 (569)
T KOG1242|consen 130 LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP 209 (569)
T ss_pred cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC
Confidence 3444555555555553333445666667777778888877777777777777766654 344557777777777777731
Q ss_pred ---hhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcc
Q 000166 203 ---PVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279 (1974)
Q Consensus 203 ---~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pv 279 (1974)
-+.+.| . .. |.+. |...+ .+|..+.. +...-+.. +++|
T Consensus 210 ~EPyiv~~l-p----~i-------l~~~-~d~~~--~Vr~Aa~~-a~kai~~~-----------------~~~~------ 250 (569)
T KOG1242|consen 210 FEPYIVPIL-P----SI-------LTNF-GDKIN--KVREAAVE-AAKAIMRC-----------------LSAY------ 250 (569)
T ss_pred CCchHHhhH-H----HH-------HHHh-hccch--hhhHHHHH-HHHHHHHh-----------------cCcc------
Confidence 122322 1 00 0111 01111 12211110 00000000 1111
Q ss_pred cccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc
Q 000166 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT 358 (1974)
Q Consensus 280 dIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~ 358 (1974)
-|=.-|| .....+...||+++..+|+-|-.+.. .|+--..-..+|+..|.+++.|+...|--.+.+|+..+..-...
T Consensus 251 aVK~llp--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN 328 (569)
T KOG1242|consen 251 AVKLLLP--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN 328 (569)
T ss_pred hhhHhhh--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc
Confidence 1111233 24455655699999999999887765 34433445778999999999999999999999999999998884
Q ss_pred ccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc------CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000166 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1974)
Q Consensus 359 ~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~------~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1974)
+ -+..++|.+++.+.|-+..+.+ |++.+.... .-+|+-+++.+.-++....-.+|..|..-+-..-.
T Consensus 329 ~---dI~~~ip~Lld~l~dp~~~~~e----~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 329 P---DIQKIIPTLLDALADPSCYTPE----CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred H---HHHHHHHHHHHHhcCcccchHH----HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 3 3778899999999999977764 555554421 13466677778889988887777665554433332
Q ss_pred hC-ChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000166 433 TS-SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 433 ~~-~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
-. .+..+.+++..++|.+-+.+.|..|+||.-++.+|+++.+.+|++.+
T Consensus 402 LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 402 LVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 22 44556677888999999999999999999999999999999998765
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0001 Score=99.70 Aligned_cols=514 Identities=17% Similarity=0.174 Sum_probs=309.2
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC--hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000166 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 404 ~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~--~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
+.+.+.....+.||..|...+-||--.+.... +... -.++.+.-.++..|.|.++=+.|-|...||.++-+-|.. +
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~-l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~-~ 896 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVV-LMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS-L 896 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhh-hccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch-h
Confidence 34455567779999999999999998887643 2222 234778899999999999999999999999887765532 2
Q ss_pred HHHhhcCCHHHHHHHHHHH----hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCC
Q 000166 482 ERSIEKLDDVRRNKLSEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 557 (1974)
Q Consensus 482 ~~~l~~Ld~~kk~KI~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~ 557 (1974)
|+.-+...+ +|.+. . .+-.... .- .
T Consensus 897 ----------k~~LV~sL~~tl~~Gkr~-------~------------~~vs~eT--el-----F--------------- 925 (1702)
T KOG0915|consen 897 ----------KKSLVDSLVNTLTGGKRK-------A------------IKVSEET--EL-----F--------------- 925 (1702)
T ss_pred ----------HHHHHHHHHHHHhccccc-------c------------ceeccch--hc-----c---------------
Confidence 222222222 22100 0 0000000 00 0
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHH---Hhhhh--ccHHHHHHHHHHHHHHHHh-
Q 000166 558 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV---GQLKS--AVWKERLEAISSLRQQVEA- 631 (1974)
Q Consensus 558 ~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~---~~L~s--~~WK~RL~a~E~l~~~v~~- 631 (1974)
..|+-+..+ .+ -.--+.-|+...++++-.+|++ -+|.. +-|.-|+.|.=.+....+.
T Consensus 926 ---q~G~Lg~Tp---~G-----------g~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a 988 (1702)
T KOG0915|consen 926 ---QEGTLGKTP---DG-----------GKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA 988 (1702)
T ss_pred ---cCCcCCCCC---CC-----------CcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH
Confidence 001100000 00 0012578999999999999996 44443 4499999988777655544
Q ss_pred hhccchhH-HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHHH
Q 000166 632 VQNLDQSV-EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTT 708 (1974)
Q Consensus 632 ~~~~~~~~-~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~ 708 (1974)
.+...+.. +++-|.... =-|.|..|++.+-.|-..+..-..........-++..+..-+++. ++|+.++-+|..
T Consensus 989 ~~kl~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~d 1065 (1702)
T KOG0915|consen 989 GEKLEPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALAD 1065 (1702)
T ss_pred HHhhhhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 33333332 333343331 158999999999999998876434455666677888888888886 789998888877
Q ss_pred HHHhhchHhHHHHH-------HHhhhhcCC-h-hhHHHHHHHHHHHHHHhccC--ccc----hHhHHHHHhhhcCCCccH
Q 000166 709 FSEAVGPGFIFERL-------YKIMKDHKN-P-KVLSEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAA 773 (1974)
Q Consensus 709 ~aE~~~p~~V~~~l-------~~~~~~~Kn-P-Kv~ae~l~wl~~ai~eFG~~--~l~----~K~lI~~~k~~~L~~sN~ 773 (1974)
+-..-..+-+.+++ +..+-..|- - ++-..++..++.++-.-+-. ... +..++.|+-+-|..|+=+
T Consensus 1066 Ll~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ 1145 (1702)
T KOG0915|consen 1066 LLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVN 1145 (1702)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchH
Confidence 76655555444433 333322221 1 11122344444444433321 111 235667776656779999
Q ss_pred HHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC----CccccccccCcCCCCCCCCCCCCccc
Q 000166 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV----PKKTVRASESTSSVSSGGSDGLPRED 849 (1974)
Q Consensus 774 ~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~----p~R~~r~~~~~~~~~~~~~d~lpRvD 849 (1974)
.||..+|+++..|-++-|..|++|+.++-|.++.....- + |-. ..|- .+.+.+ .. |. -|..
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~l-E------~~vLnYls~r~--~~~e~e----al-Dt-~R~s 1210 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSEL-E------PQVLNYLSLRL--INIETE----AL-DT-LRAS 1210 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcccc-c------hHHHHHHHHhh--hhhHHH----HH-HH-HHHh
Confidence 999999999999999999999999999999998765321 0 000 0111 000000 00 00 0001
Q ss_pred cccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcCh
Q 000166 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGP 928 (1974)
Q Consensus 850 Is~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~ 928 (1974)
+.. +++= +|+|+..|+ .|--..++|+.+-|..-+ +-.|-+=..-++.+|..|+.-+|.
T Consensus 1211 ~ak----------sspm-------meTi~~ci~----~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~ 1269 (1702)
T KOG0915|consen 1211 AAK----------SSPM-------METINKCIN----YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGS 1269 (1702)
T ss_pred hhc----------CCcH-------HHHHHHHHH----hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcc
Confidence 111 1111 344444442 222223566666665544 333444445677888889999999
Q ss_pred hHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCc
Q 000166 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (1974)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~ 1008 (1974)
...+|+.-++-..+-.++|...++|.+.-.|+--.+.....+.+...+ ..++.|+- ....+
T Consensus 1270 emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi--------------e~~l~~~l---~k~es-- 1330 (1702)
T KOG0915|consen 1270 EMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI--------------ETLLADLL---GKDES-- 1330 (1702)
T ss_pred ccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH--------------HHHHHHHh---ccCCC--
Confidence 999999999999999999999999999988888777766655543322 23444433 22221
Q ss_pred chhhhhhhHhhhccCCChHHHH-HHHHHHHHHHHhcCHH
Q 000166 1009 DAAHLLKPASIAMTDKSSDVRK-AAEACIVEILRAGGQE 1046 (1974)
Q Consensus 1009 ~~~~~~~p~~~~L~Dr~~dVRk-aA~~~L~~~m~~~G~~ 1046 (1974)
.-+..|.-+.. +.-.+.|+=+ .|+++||.+....-|+
T Consensus 1331 ~~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1331 LKSISCATISN-IANYSQEMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred ccchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHH
Confidence 11333444444 6666777766 6778888776666666
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00012 Score=101.28 Aligned_cols=260 Identities=19% Similarity=0.156 Sum_probs=166.9
Q ss_pred cchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHH
Q 000166 695 DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAA 774 (1974)
Q Consensus 695 D~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~ 774 (1974)
|+.+|..|.+.|..+. +.-++..|... .+..++-|+..++.-|..+.+... +.. .+... |++.|+.
T Consensus 634 d~~VR~~Av~~L~~~~----~~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~----~~~----~L~~~-L~~~d~~ 699 (897)
T PRK13800 634 DPGVRRTAVAVLTETT----PPGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLP----PAP----ALRDH-LGSPDPV 699 (897)
T ss_pred CHHHHHHHHHHHhhhc----chhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccC----chH----HHHHH-hcCCCHH
Confidence 3567777776666653 23345555554 478888888888777655432111 112 23344 7788888
Q ss_pred HHHHHHHHHHHHHhhhCch--hHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccccc
Q 000166 775 TRNATIKLLGALHKFVGPD--IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 852 (1974)
Q Consensus 775 VR~aAi~Ll~~ly~~~G~~--l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~ 852 (1974)
||.+|+..|+.+.. |+. +...|.|..|.+....=.-..++ ..
T Consensus 700 VR~~A~~aL~~~~~--~~~~~l~~~L~D~d~~VR~~Av~aL~~~-----------------------------~~----- 743 (897)
T PRK13800 700 VRAAALDVLRALRA--GDAALFAAALGDPDHRVRIEAVRALVSV-----------------------------DD----- 743 (897)
T ss_pred HHHHHHHHHHhhcc--CCHHHHHHHhcCCCHHHHHHHHHHHhcc-----------------------------cC-----
Confidence 99988888887642 211 11222222222111111111110 00
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000166 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (1974)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1974)
.+.++.-+.|.+|-+|.++.+.|..+-... ..-...|...+.|.+..|...|+..++.+ |.+
T Consensus 744 --~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~----g~~--- 805 (897)
T PRK13800 744 --VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAEL----GCP--- 805 (897)
T ss_pred --cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhc----CCc---
Confidence 134667799999999999999998765321 22356677778999988888888877665 211
Q ss_pred hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhh
Q 000166 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1974)
Q Consensus 933 ~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~ 1012 (1974)
..+.+.++..|.|....||.+|..+|... +-..-++.+...|.++ ++.+|.++..=|.+. ... ..
T Consensus 806 --~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~----~~~---~~ 870 (897)
T PRK13800 806 --PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW----PGD---PA 870 (897)
T ss_pred --chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc----CCC---HH
Confidence 12335688999999999999999999654 4455667888888876 588999998887752 111 12
Q ss_pred hhhhHhhhccCCChHHHHHHHHHHH
Q 000166 1013 LLKPASIAMTDKSSDVRKAAEACIV 1037 (1974)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1974)
...++...|+|.+++||+.|..+|.
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 3344667889999999999999885
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.035 Score=71.40 Aligned_cols=337 Identities=20% Similarity=0.257 Sum_probs=237.8
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc-cccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc----
Q 000166 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---- 397 (1974)
Q Consensus 323 y~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~-F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~---- 397 (1974)
...|++.+..+|..--..|-+.|++.|+.||.-|..- =.+-..-+-..+.|.++|-=+.|.-.+..||-+|+...
T Consensus 797 lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 4578888888999888899999999999999999743 11233444556789999999999999999999998851
Q ss_pred -CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHH---HhhhCCCCHHHHHHHHHHHHHHH
Q 000166 398 -CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 398 -~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l---~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
.-++.++++.+...|+||.-.|-..+..++.+.-...+.-.. .+.++-+| +..|---+.++|.+|.+.||-|.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~---aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVS---AREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 124678999999999999999999999999988765543221 14445544 45566788999999999999999
Q ss_pred HHhC-hhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCC
Q 000166 474 KSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552 (1974)
Q Consensus 474 k~~G-e~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~ 552 (1974)
+.+| .+.+..++++|+- +|.-.... +.-.-+ -
T Consensus 954 kaIGPqdVLatLlnnLkv------qeRq~Rvc----TtvaIa-------------------------------------I 986 (1172)
T KOG0213|consen 954 KAIGPQDVLATLLNNLKV------QERQNRVC----TTVAIA-------------------------------------I 986 (1172)
T ss_pred HhcCHHHHHHHHHhcchH------HHHHhchh----hhhhhh-------------------------------------h
Confidence 9999 5667777888853 33322210 000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 000166 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV 632 (1974)
Q Consensus 553 ~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~ 632 (1974)
+ . +...++
T Consensus 987 V------------------------a---E~c~pF--------------------------------------------- 994 (1172)
T KOG0213|consen 987 V------------------------A---ETCGPF--------------------------------------------- 994 (1172)
T ss_pred h------------------------h---hhcCch---------------------------------------------
Confidence 0 0 000000
Q ss_pred hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccch--hhhHHHHHHHHHH
Q 000166 633 QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFS 710 (1974)
Q Consensus 633 ~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~a 710 (1974)
.+|--++ -.+.-.|..||+.+|..++.+.+.-+..++..++.++|-+-|-+.|.- .|..+..++.-++
T Consensus 995 -------tVLPalm---neYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 995 -------TVLPALM---NEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred -------hhhHHHH---hhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 0111111 124556888999999999999998888899999999999999999854 5777777777665
Q ss_pred HhhchHhH----HHHHHHhhhh---cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHH
Q 000166 711 EAVGPGFI----FERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLL 783 (1974)
Q Consensus 711 E~~~p~~V----~~~l~~~~~~---~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll 783 (1974)
=- .+++- +-+|+..++- --+|-|+......|-.+ -. .+.+..+..|+-. ||=|.-..||..=-.++
T Consensus 1065 Lg-~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~----r~-~Lg~~~~~~Y~~Q-GLFHParkVR~~yw~vy 1137 (1172)
T KOG0213|consen 1065 LG-VPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGL----RV-ALGPQAMLKYCLQ-GLFHPARKVRKRYWTVY 1137 (1172)
T ss_pred cC-CCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHH----HH-HhchHHHHHHHHH-hccCcHHHHHHHHHHHH
Confidence 43 22222 2233333222 24677776555443333 22 2445688999987 59999999999999999
Q ss_pred HHHHhhhCchhHhhh
Q 000166 784 GALHKFVGPDIKGFL 798 (1974)
Q Consensus 784 ~~ly~~~G~~l~~~l 798 (1974)
-.||.+-.++|-.++
T Consensus 1138 n~my~~~~dalv~~y 1152 (1172)
T KOG0213|consen 1138 NSMYHGSQDALVACY 1152 (1172)
T ss_pred HhHhhcccchhhhcc
Confidence 999998888888877
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.13 Score=68.38 Aligned_cols=1063 Identities=16% Similarity=0.180 Sum_probs=541.3
Q ss_pred hhhhhhccCChHHHHHHHHHHHH-hhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc--------
Q 000166 289 GFWEGVKATKWSERKDAVAELTK-LAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT-------- 358 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~-L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~-------- 358 (1974)
.+.++|.++.=--|--|...|.+ |-+ ..++..+..-+++++|-+.+.|+|--|..+|.+|+|-|++..+.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve 88 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVE 88 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 46677888777778899999876 433 55666777899999999999999999999999999966654331
Q ss_pred --------------------------cccc-----chhhhHHHHHHHhccCCH---------------------------
Q 000166 359 --------------------------HFSG-----SSRFLLPVLLEKLKEKKP--------------------------- 380 (1974)
Q Consensus 359 --------------------------~F~~-----y~~~~l~~lLeklKEKK~--------------------------- 380 (1974)
+..| |+..+++.|+-+|+.--.
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll 168 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLL 168 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccC
Confidence 1222 677777777777765322
Q ss_pred --------------------HHHHHHHHHHHHHHHhcCCC--hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh-
Q 000166 381 --------------------TVAESLTQTLQAMHKAGCLN--LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA- 437 (1974)
Q Consensus 381 --------------------~V~eA~~~aLda~~~~~~~~--l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~- 437 (1974)
.||.-+..||--++.+ |-+ +.+++|++...|.+. -....++-...|+...-+.
T Consensus 169 ~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~-~~~~ly~~li~~Ll~~L~~~---~q~~~~rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 169 PNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASS-CNRDLYVELIEHLLKGLSNR---TQMSATRTYIQCLAAICRQA 244 (1233)
T ss_pred cchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhccCCC---CchHHHHHHHHHHHHHHHHh
Confidence 2222223333333332 111 223444444444332 1222222223333211000
Q ss_pred --HHhHhhhhhHHHHHhhh---CCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCC
Q 000166 438 --AVLKVHKDYVPICMECL---NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 512 (1974)
Q Consensus 438 --~~~~~~k~~~~~l~k~l---~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~ 512 (1974)
.+...+.-++|.+..-. +.-+-|.|+.+.++++.|...-- +.+.++...+-..-..+| .= .
T Consensus 245 g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp-~ei~p~~pei~~l~l~yi----sY---D------ 310 (1233)
T KOG1824|consen 245 GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP-KEILPHVPEIINLCLSYI----SY---D------ 310 (1233)
T ss_pred cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh-hhhcccchHHHHHHHHHh----cc---C------
Confidence 01111234566666666 88889999999999999987755 335555543322211111 10 0
Q ss_pred CccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCC-CCCCCH
Q 000166 513 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVE-PSEMSL 591 (1974)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~-~~~~s~ 591 (1974)
|.=- ..+.-.. ...-.++.+|.+ ..+.|.
T Consensus 311 -------------PNy~--------------------------------yd~~eDe-----d~~~~ed~eDde~~deYsD 340 (1233)
T KOG1824|consen 311 -------------PNYN--------------------------------YDTEEDE-----DAMFLEDEEDDEQDDEYSD 340 (1233)
T ss_pred -------------CCCC--------------------------------CCCccch-----hhhhhhccccchhcccccc
Confidence 0000 0000000 000000000000 122232
Q ss_pred HHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh--cCCCccchHHHHHHHHHHHHH
Q 000166 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCM--LPGWSEKNVQVQQQVIEVINY 669 (1974)
Q Consensus 592 Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~--~PgwkesNfqV~~k~leil~~ 669 (1974)
| .+-.||.|-+|..-+...|.+-.+. ...+.+.+.- --+|||--=.|-..+|+++..
T Consensus 341 D------------------eD~SWkVRRaAaKcl~a~IsSR~E~---L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ 399 (1233)
T KOG1824|consen 341 D------------------EDMSWKVRRAAAKCLEAVISSRLEM---LPDFYQTLGPALISRFKEREENVKADVFHAYIA 399 (1233)
T ss_pred c------------------cchhHHHHHHHHHHHHHHHhccHHH---HHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2 2446999999999888777663221 1122222210 014777666677788888877
Q ss_pred HHHhcCCCCccchhhhccchhhccccch-hhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHH
Q 000166 670 LAATATKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (1974)
Q Consensus 670 la~~~~~fs~~~~~~~l~~lveKlgD~K-~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~e 748 (1974)
+..+-+...+.. +=+.-.|. |.+| .+..-.+-.. +++.-+-+.+ ..|+-|.+..|+..+...|.-
T Consensus 400 ll~qt~~~~~~~---~d~d~~e~-~g~~s~~~~L~~~~~---------~iVkai~~ql-r~ks~kt~~~cf~lL~eli~~ 465 (1233)
T KOG1824|consen 400 LLKQTRPVIEVL---ADNDAMEQ-GGTPSDLSMLSDQVP---------LIVKAIQKQL-REKSVKTRQGCFLLLTELINV 465 (1233)
T ss_pred HHHcCCCCcccc---cCchhhhc-cCCccchHHHHhhhH---------HHHHHHHHHH-hhccccchhhHHHHHHHHHHh
Confidence 765432211111 11111333 3333 1111122222 3333333443 477778999999999998863
Q ss_pred ---hccCccc--hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000166 749 ---FGVSHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1974)
Q Consensus 749 ---FG~~~l~--~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~ 823 (1974)
.|...++ +..++--+.+- |+-.+.+-.+ |+-+|-.++ . .+|
T Consensus 466 lp~~l~~~~~slvpgI~~~l~Dk---Ssss~~ki~~---L~fl~~~L~--------s------------------~~p-- 511 (1233)
T KOG1824|consen 466 LPGALAQHIPSLVPGIIYSLNDK---SSSSNLKIDA---LVFLYSALI--------S------------------HPP-- 511 (1233)
T ss_pred CcchhhhcccccchhhhhhcCCc---cchHHHHHHH---HHHHHHHHh--------c------------------CCh--
Confidence 3333332 33444333321 2222222222 222232111 0 011
Q ss_pred CccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCC-------Cccch
Q 000166 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-------GTGEL 896 (1974)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~-------~~geL 896 (1974)
.++-- -.+.+++-+..-.+++=+|+--|||--.++++.-- ..++|+ .++++
T Consensus 512 -~~fhp--------------------~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvi-rpl~~~~~~d~~~~v~~m 569 (1233)
T KOG1824|consen 512 -EVFHP--------------------HLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVI-RPLQPPSSFDASPYVKTM 569 (1233)
T ss_pred -hhccc--------------------chhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHh-cccCCCccCCCChhHHHH
Confidence 11100 01234555777788999999999999999998643 556662 14667
Q ss_pred HHHHhhhc--cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh-------c
Q 000166 897 FGGLRGRL--YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA-------V 967 (1974)
Q Consensus 897 ~~aLk~Rl--~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~-------~ 967 (1974)
..+--+|| +|+..-|.--|..|+|++-..+|---+-....++|-++++||+ ...|=+|..|++-++.+ .
T Consensus 570 ~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l~~ 647 (1233)
T KOG1824|consen 570 YDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN--EITRLTAVKALTLIAMSPLDIDLSP 647 (1233)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHhccceeehhh
Confidence 77777777 7999999999999999999999933344566666666666664 56788899999988865 2
Q ss_pred cchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC--c-chhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcC
Q 000166 968 HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--P-DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1974)
Q Consensus 968 gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~--~-~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G 1044 (1974)
-+.++++.++.+|. +.+-.+|.+.+.++.+-+...... . .+..++.-+-..+.+..--|-..|-++|-+++..-.
T Consensus 648 ~l~~il~~l~~flr--K~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p 725 (1233)
T KOG1824|consen 648 VLTEILPELASFLR--KNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP 725 (1233)
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 35566777788876 223457888888887766665331 1 233334445555667777777777777777665432
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhh
Q 000166 1045 QETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDF 1124 (1974)
Q Consensus 1045 ~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1124 (1974)
.-- -+.+....+.|...+...- -+|.
T Consensus 726 s~l-----~~~~~~iL~~ii~ll~Spl--------------------------------------lqg~----------- 751 (1233)
T KOG1824|consen 726 SSL-----LKISNPILDEIIRLLRSPL--------------------------------------LQGG----------- 751 (1233)
T ss_pred HHH-----HHHhhhhHHHHHHHhhCcc--------------------------------------ccch-----------
Confidence 211 1111122222332221100 0000
Q ss_pred hhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHh---hhHHHHHhhcccCHHHHHHHHHHHHHhcCCC
Q 000166 1125 AVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKY---FREDLHRRLLSTDFKKQVDGLEMLQKALPSI 1201 (1974)
Q Consensus 1125 ~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~---~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~ 1201 (1974)
.-+..+.+ ++.+. .-.+|.-+++..+.-.++|. ....++.+- |..--+.+.+|+...++.
T Consensus 752 -al~~~l~~--------f~alV----~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa----~~siA~cvA~Lt~~~~~~ 814 (1233)
T KOG1824|consen 752 -ALSALLLF--------FQALV----ITKEPDLDYISLLSLLTAPVYEQVTDGLHKQA----YYSIAKCVAALTCACPQK 814 (1233)
T ss_pred -HHHHHHHH--------HHHHH----hcCCCCccHHHHHHHHcCCcccccccchhHHH----HHHHHHHHHHHHHhcccc
Confidence 00000000 00000 00112223333222222221 111122222 111234555666666543
Q ss_pred hhhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHH
Q 000166 1202 RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTK 1281 (1974)
Q Consensus 1202 ~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~ 1281 (1974)
..++.. |. .--|...|.+.-.|+|-+|. |.+.||+.-..-+.-|--.+++-+|.+.|.|+..----+-
T Consensus 815 s~s~a~------kl-~~~~~s~~s~~~ikvfa~Ls-----lGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALG 882 (1233)
T KOG1824|consen 815 SKSLAT------KL-IQDLQSPKSSDSIKVFALLS-----LGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALG 882 (1233)
T ss_pred chhHHH------HH-HHHHhCCCCchhHHHHHHhh-----hhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhh
Confidence 333332 22 12334578888889988888 8999999888777777778888899999999986544333
Q ss_pred HHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcc--ccccchHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000166 1282 QIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEI--SGQLKSLQIVASLTAERDGEIRKAALNTLATGY 1359 (1974)
Q Consensus 1282 ~~~~vyp~skvf~~l~~glksKN~r~R~EcL~el~~li~~~G~~v--~~~~Kal~~iA~~i~drD~~VR~AALn~l~~~Y 1359 (1974)
.+. +=.-++..|||++-..+---||=.= |--+-..|..--+.- ..-.|-....-++++--.-.+||--=.|||.+-
T Consensus 883 sl~-vgnl~~yLpfil~qi~sqpk~QyLL-LhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~ 960 (1233)
T KOG1824|consen 883 SLA-VGNLPKYLPFILEQIESQPKRQYLL-LHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV 960 (1233)
T ss_pred hhh-cCchHhHHHHHHHHHhcchHhHHHH-HHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH
Confidence 332 2234677889888776554443211 111111122211110 011223344455555555556777777777554
Q ss_pred HHhchhHHHHhccCCHHHHhhHHHHHHHhHHhhhhhccCCCchhhHhhhhhccccCCCccccccccccccCCcccccccC
Q 000166 1360 KILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNY 1439 (1974)
Q Consensus 1360 ~~~Gd~v~k~vg~ls~k~~smLeer~kr~~k~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1439 (1974)
.+.-+.++ =.|+.+... +.|. .|.++ ++ .-.|
T Consensus 961 l~epesLl-----------pkL~~~~~S----------~a~~-----~rs~v-----------------vs-----avKf 992 (1233)
T KOG1824|consen 961 LIEPESLL-----------PKLKLLLRS----------EASN-----TRSSV-----------------VS-----AVKF 992 (1233)
T ss_pred hCChHHHH-----------HHHHHHhcC----------CCcc-----hhhhh-----------------hh-----eeee
Confidence 44444432 222222210 1110 00000 00 0000
Q ss_pred CCcccccccccCcccccCCCCCCChhHHHhhhcCCChhhHHHhhHHHHHHHhhhcCCCCchhHHHHHHhHHHHHHHHHHH
Q 000166 1440 GHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANK 1519 (1974)
Q Consensus 1440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ve~lk~i~~~l~~~~~~~~~~~~~~l~~~~d~lv~~l~~~ 1519 (1974)
.-. ..|++-.. .--..+...+..+...|.++...++-.+....-. .|. .+.+++...=..+..= ..
T Consensus 993 sis-------d~p~~id~-~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahN---Kps--lIrDllpeLLp~Ly~e-Tk 1058 (1233)
T KOG1824|consen 993 SIS-------DQPQPIDP-LLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHN---KPS--LIRDLLPELLPLLYSE-TK 1058 (1233)
T ss_pred eec-------CCCCccCH-HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHcc---CHh--HHHHHHHHHHHHHHHh-hh
Confidence 000 00110000 0001233456677888888888888776644433 221 2333332211111110 01
Q ss_pred HHHHhh-hcccC-------cchhhhHHHHHHHHHHhccHHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 000166 1520 VAKTFD-FSLTG-------ASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALN 1591 (1974)
Q Consensus 1520 ~~~~f~-~~~~~-------~~~r~~k~ll~~L~~~f~~~~La~~~s~~~L~~Ll~~Ll~~Lld~~~~~~~dg~~l~k~lN 1591 (1974)
++.-.. ...|| ...-+-|...-+|+++.+.. ++.-.+. +++..+-+ .++| +.-+|-+|
T Consensus 1059 vrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdsc-----ld~~dit----~Fl~~~~~----GL~D-hydiKmlt 1124 (1233)
T KOG1824|consen 1059 VRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSC-----LDRLDIT----EFLNHVED----GLED-HYDIKMLT 1124 (1233)
T ss_pred hhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhh-----hhhccHH----HHHHHHHh----hcch-hhHHHHHH
Confidence 111111 11222 23444455667776655421 1111122 22333322 1222 36789999
Q ss_pred HHHHHHhhcCCCcchHHHHHHhhccCCCCCCCCCCCchhhhhhchhhhHHHHHHHHHhhhhhhhhccCCChhHHHHHHHH
Q 000166 1592 VLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHV 1671 (1974)
Q Consensus 1592 ~l~lriLe~~~~t~~f~ALi~LL~~~~~~~~~~~~~~~~~~~~~~kf~eLvmKCLwKltK~l~~~i~~ld~d~iL~~Ih~ 1671 (1974)
.+|+--|.++-+..+.--+=+++......+.--+..+..-.+ -.|--| +.+--.|.+-.| .+|++++...++.+...
T Consensus 1125 ~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE-~ek~~e-LkRSAlRav~~L-~~ip~v~~np~~~df~s 1201 (1233)
T KOG1824|consen 1125 FLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQE-FEKQDE-LKRSALRAVAAL-LTIPEVEKNPQFSDFES 1201 (1233)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHh-HHHHHH-HHHHHHHHHHHH-hcccccccChHHHHHHH
Confidence 999999999999888877666655432111000111111111 124344 456666777677 67888898999988877
Q ss_pred HHHhhCh
Q 000166 1672 YLQELGM 1678 (1974)
Q Consensus 1672 Fl~~~p~ 1678 (1974)
=++.-|+
T Consensus 1202 qik~~pe 1208 (1233)
T KOG1824|consen 1202 QIKSNPE 1208 (1233)
T ss_pred HhhcChh
Confidence 7777553
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0067 Score=81.64 Aligned_cols=348 Identities=14% Similarity=0.165 Sum_probs=208.5
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHhhhhc-CChhhHHHHHHHHHHHHhhch----hhhHHH
Q 000166 57 FKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA----VDVFLD 131 (1974)
Q Consensus 57 ~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~~~~v~~~lveK~L~-~r~ktk~~a~e~~l~~vE~e~----~~~v~e 131 (1974)
+.|-+.|.|...+--||-++..+- .....+. +-.-+.|||+ ..|-.+..|.-|++.+..... ...+++
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~Ir------~~~i~e~-l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~ 182 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMCIR------VSSVLEY-TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKK 182 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCC------cHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHH
Confidence 344556666666555555442211 0111111 2223578887 468888888888888765422 124667
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHhhCCC-------------------------c------------cChhHHHhhch
Q 000166 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAK-------------------------I------------IPPKRILKMLP 174 (1974)
Q Consensus 132 ~ll~~~~~K~PKvvaaai~~l~~~l~~FG~k-------------------------v------------v~~K~ilk~l~ 174 (1974)
.|...+..++|-|++.|+.++.++-...+-. + -....|+..+-
T Consensus 183 ~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~ 262 (746)
T PTZ00429 183 DLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVL 262 (746)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 7888899999999999999998885432200 0 00234777777
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchh--hhHHhHHhhhhhccc
Q 000166 175 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKI--RAEQDKELGQELISE 252 (1974)
Q Consensus 175 ~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~--Rs~q~~~~~~~a~~~ 252 (1974)
+.+.|+|.+|-=+|.+++..+...+.++.++ ..+..+++.++. | ....+-.||+ |.-..-..
T Consensus 263 ~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~-~~~~rl~~pLv~-L-------~ss~~eiqyvaLr~I~~i~~------- 326 (746)
T PTZ00429 263 PRMSHQNPAVVMGAIKVVANLASRCSQELIE-RCTVRVNTALLT-L-------SRRDAETQYIVCKNIHALLV------- 326 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHhcCcCCHHHHH-HHHHHHHHHHHH-h-------hCCCccHHHHHHHHHHHHHH-------
Confidence 8888999999999999988776655444332 233445544432 1 1122334443 22211000
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHH
Q 000166 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKK 332 (1974)
Q Consensus 253 ~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk 332 (1974)
..| +++..-- .-|+-...++.- .|.+.||-|..|+. +.|..++++.|+.
T Consensus 327 -----------------~~P-------~lf~~~~-~~Ff~~~~Dp~y-IK~~KLeIL~~Lan-----e~Nv~~IL~EL~e 375 (746)
T PTZ00429 327 -----------------IFP-------NLLRTNL-DSFYVRYSDPPF-VKLEKLRLLLKLVT-----PSVAPEILKELAE 375 (746)
T ss_pred -----------------HCH-------HHHHHHH-HhhhcccCCcHH-HHHHHHHHHHHHcC-----cccHHHHHHHHHH
Confidence 001 1111111 247777777765 79999999988863 3567899999999
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHH-------------------
Q 000166 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAM------------------- 393 (1974)
Q Consensus 333 ~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~------------------- 393 (1974)
.+.|.+..++..++++|+.+|..+ ...+..++..|++-+..+-.-|.+++ ..+-.+
T Consensus 376 Ya~d~D~ef~r~aIrAIg~lA~k~----~~~a~~cV~~Ll~ll~~~~~~v~e~i-~vik~IlrkyP~~~il~~L~~~~~~ 450 (746)
T PTZ00429 376 YASGVDMVFVVEVVRAIASLAIKV----DSVAPDCANLLLQIVDRRPELLPQVV-TAAKDIVRKYPELLMLDTLVTDYGA 450 (746)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHHCccHHHHHHHHHhhcc
Confidence 999999999999999999999664 44566677777766655433333222 112111
Q ss_pred ----------------HHhcCCChh---hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHH-hh
Q 000166 394 ----------------HKAGCLNLV---DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICM-EC 453 (1974)
Q Consensus 394 ----------------~~~~~~~l~---~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~-k~ 453 (1974)
.+| |.-++ ++++.+...+....+.||.+++.-..+++-..+... +..+..++ .+
T Consensus 451 ~~i~e~~AKaaiiWILGEy-~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~-----~~~l~~vL~~~ 524 (746)
T PTZ00429 451 DEVVEEEAKVSLLWMLGEY-CDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGM-----EPQLNRVLETV 524 (746)
T ss_pred cccccHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHHH
Confidence 112 21121 233333333345678899999998888887665322 22233333 44
Q ss_pred h-CCCCHHHHHHHHHHH
Q 000166 454 L-NDGTPEVRDAAFSVL 469 (1974)
Q Consensus 454 l-~Ds~~~VR~aA~~~l 469 (1974)
. +|.++||||-|+.-.
T Consensus 525 t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 525 TTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HhcCCChhHHHHHHHHH
Confidence 3 568999999999643
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.014 Score=78.16 Aligned_cols=533 Identities=16% Similarity=0.126 Sum_probs=290.6
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh
Q 000166 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV 402 (1974)
Q Consensus 323 y~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~ 402 (1974)
--+|+..+...+ |.|.-|...++.=++.+..--+ -..|..+++|++.--.-.....||+++.+++..+... ++=.
T Consensus 119 r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~--~~~~ 193 (759)
T KOG0211|consen 119 RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVG--LPKE 193 (759)
T ss_pred hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh--cChH
Confidence 466777777777 8887777666665555555433 2356788888888888888889999999999999875 3333
Q ss_pred hhHHHHHHHhhcCCchh-----HHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 403 DVVEDVKTSVKNKVPLV-----RSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 403 ~~~e~i~~al~~KnP~v-----k~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
.. .+...++-.+.... |.-....+..+....+...+ -+.+.|..-....|..+.||.+++.-+|.+.+.++
T Consensus 194 ~~-~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v---k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~ 269 (759)
T KOG0211|consen 194 KL-REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV---KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE 269 (759)
T ss_pred HH-HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH---HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH
Confidence 33 33333333344333 44455555555544442222 24567788888999999999999999999999988
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCC
Q 000166 478 MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 557 (1974)
Q Consensus 478 e~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~ 557 (1974)
...... .+.+....-+.+ -. ..++--+ ..+
T Consensus 270 ~~~~~s---~v~~~~~~L~~D---dq----------------------------dsVr~~a--~~~-------------- 299 (759)
T KOG0211|consen 270 SEIVKS---EVLPTLIQLLRD---DQ----------------------------DSVREAA--VES-------------- 299 (759)
T ss_pred HHHHHh---hccHHHhhhhhc---ch----------------------------hhHHHHH--HHH--------------
Confidence 621110 000000000000 00 0000000 000
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccch
Q 000166 558 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ 637 (1974)
Q Consensus 558 ~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~ 637 (1974)
- ....+.-.++++ ....+-+.+++...+.+|..|-...+.+.+.-..+++ +
T Consensus 300 ---------------~--------~~l~~l~~~~~d----~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~-~- 350 (759)
T KOG0211|consen 300 ---------------L--------VSLLDLLDDDDD----VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP-S- 350 (759)
T ss_pred ---------------H--------HHHHHhcCCchh----hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc-c-
Confidence 0 000000000000 1123334444444444444444444333322111111 0
Q ss_pred hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchh--hhHHHHHHHHHHHhhc-
Q 000166 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKT--RAHAMKCLTTFSEAVG- 714 (1974)
Q Consensus 638 ~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~--r~~a~e~L~~~aE~~~- 714 (1974)
.+| ...++....-++|... |..+..-...+++-.+
T Consensus 351 ------------~~~------------------------------~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 351 ------------ATR------------------------------TQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred ------------cCc------------------------------ccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc
Confidence 011 1112223333344331 2222222223333333
Q ss_pred ---hHhHHHHHHHh---hhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHh
Q 000166 715 ---PGFIFERLYKI---MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (1974)
Q Consensus 715 ---p~~V~~~l~~~---~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~ 788 (1974)
+......+++. +....|+-|++...-.+......||.. =.+..+.+..... +..-+|.||-.-+..+
T Consensus 389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~-~ti~~llp~~~~~-l~de~~~V~lnli~~l----- 461 (759)
T KOG0211|consen 389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE-RTISELLPLLIGN-LKDEDPIVRLNLIDKL----- 461 (759)
T ss_pred ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC-cCccccChhhhhh-cchhhHHHHHhhHHHH-----
Confidence 33333333222 234566666665555544444444421 1122333333322 4444444444443221
Q ss_pred hhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChH
Q 000166 789 FVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWK 868 (1974)
Q Consensus 789 ~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK 868 (1974)
.+.+.+.... +... .+..+=+.+...-+|.+|.
T Consensus 462 ----------------------s~~~~v~~v~------g~~~-------------------~s~slLp~i~el~~d~~wR 494 (759)
T KOG0211|consen 462 ----------------------SLLEEVNDVI------GIST-------------------VSNSLLPAIVELAEDLLWR 494 (759)
T ss_pred ----------------------HHHHhccCcc------cchh-------------------hhhhhhhhhhhhccchhHH
Confidence 2333332100 0000 0111122344556677999
Q ss_pred HHHHHHHHHHHHHHHcc-cCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhcc
Q 000166 869 VRLESIEAVNKILEEAN-KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947 (1974)
Q Consensus 869 ~RkEaLe~v~~il~~an-krI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D 947 (1974)
+|.+.++-+-.++.+-. .++-+. ++++. ..=+.|-=--+---|.+++..++...|+. =+...++|-++...++
T Consensus 495 vr~ail~~ip~la~q~~~~~~~~~-~~~l~---~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~--w~~~~~i~k~L~~~~q 568 (759)
T KOG0211|consen 495 VRLAILEYIPQLALQLGVEFFDEK-LAELL---RTWLPDHVYSIREAAARNLPALVETFGSE--WARLEEIPKLLAMDLQ 568 (759)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhHH-HHHHH---HhhhhhhHHHHHHHHHHHhHHHHHHhCcc--hhHHHhhHHHHHHhcC
Confidence 99999999988886532 111121 12222 22234433445566788888899998833 3455788999999999
Q ss_pred CchhHHHHHHHHHHHHHHhccchhhhHHHHHHH----hcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhc-c
Q 000166 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM-T 1022 (1974)
Q Consensus 948 ~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L----~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L-~ 1022 (1974)
..-.+|.+...++..++..+|-+-..+++...+ .++ +|+.|-.++..|.+-++.+.. +.....+.|+..+| .
T Consensus 569 ~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~L~~i~~~L~~-~~~~~~v~pll~~L~~ 645 (759)
T KOG0211|consen 569 DNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKHLPKILKLLDE-SVRDEEVLPLLETLSS 645 (759)
T ss_pred cccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHHHHHHHhhcch-HHHHHHHHHHHHHhcc
Confidence 888999999999999999999766655444444 344 588999999999887766653 45667788877776 7
Q ss_pred CCChHHHHHHHHHHHHHHHhcCHHHH
Q 000166 1023 DKSSDVRKAAEACIVEILRAGGQETI 1048 (1974)
Q Consensus 1023 Dr~~dVRkaA~~~L~~~m~~~G~~~~ 1048 (1974)
|-+.|||-.|+.+.+.++-+.-|..+
T Consensus 646 d~~~dvr~~a~~a~~~i~l~~~~~~~ 671 (759)
T KOG0211|consen 646 DQELDVRYRAILAFGSIELSRLESSL 671 (759)
T ss_pred CcccchhHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999998877665544
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0029 Score=82.50 Aligned_cols=389 Identities=15% Similarity=0.156 Sum_probs=256.1
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHH
Q 000166 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~ 369 (1974)
-..-+.+++-.+|+=+-=.+..+.... ++-.--.+.+|.+=+.|.|-.+...|+++++.++. ...+..+++
T Consensus 47 vi~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~ 117 (526)
T PF01602_consen 47 VIKLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIP 117 (526)
T ss_dssp HHCTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHH
Confidence 344456788888887665555543210 00122367788888889999999999999999982 245788999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHH
Q 000166 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1974)
Q Consensus 370 ~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~ 448 (1974)
.+..-+.++.+.||.++.-|+-.++....-.+.+ +.+.+...+..++|.|+..++..+..+ ..++.....++..+..
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~ 195 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIR 195 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHH
Confidence 9999999999999999999999999862223445 689999999999999999999999988 3333332244566677
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH-----HHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000166 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-----LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1974)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~-----l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1974)
.+.+.+.+.+|-++-....+|..+...--+.. +..++.-|......-+-|++.
T Consensus 196 ~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~---------------------- 253 (526)
T PF01602_consen 196 ILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIR---------------------- 253 (526)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHH----------------------
Confidence 77788899999987776666554332211111 111111111111111111110
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000166 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1974)
Q Consensus 524 ~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~ 603 (1974)
... ....+.+ +...+-
T Consensus 254 -----------------~i~------------------------------------------~l~~~~~-----~~~~~~ 269 (526)
T PF01602_consen 254 -----------------LII------------------------------------------KLSPSPE-----LLQKAI 269 (526)
T ss_dssp -----------------HHH------------------------------------------HHSSSHH-----HHHHHH
T ss_pred -----------------HHH------------------------------------------HhhcchH-----HHHhhH
Confidence 000 0000111 112223
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~-~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~ 682 (1974)
.-+...|.++++-.|.-+++.+....... +... ..++.+.++. .+.+..|-...++++..+++. ..+
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n~ 337 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SNV 337 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HHH
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cch
Confidence 45678889999999999999998776664 3222 3444444443 467788999999999998864 245
Q ss_pred hhhccchhhccc---cchhhhHHHHHHHHHHHhhc--hHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH
Q 000166 683 VLCLLGISERVA---DIKTRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK 757 (1974)
Q Consensus 683 ~~~l~~lveKlg---D~K~r~~a~e~L~~~aE~~~--p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K 757 (1974)
..++..+..-+. |.-.+..+...+..+|+.+. .++.+..+++.+ ...++-+..+++..+...+....-. -.
T Consensus 338 ~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~~ 413 (526)
T PF01602_consen 338 KEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---RE 413 (526)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---HH
T ss_pred hhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---hH
Confidence 556666666663 55688888889999999765 467888888875 6678899999999999999774322 12
Q ss_pred hHHHHHhhhcCC-CccHHHHHHHHHHHHHHHhhhCc
Q 000166 758 DLIDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGP 792 (1974)
Q Consensus 758 ~lI~~~k~~~L~-~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1974)
.++..+.+. +. -.++.++.+++-++|+---++..
T Consensus 414 ~~l~~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 414 KILKKLIEL-LEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHHHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHH-HHHhhHHHHHHHHHhhhcccCCcccc
Confidence 233443333 33 47888999999999997766665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.051 Score=68.75 Aligned_cols=351 Identities=17% Similarity=0.213 Sum_probs=247.3
Q ss_pred CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc--cccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC
Q 000166 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1974)
Q Consensus 321 ~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr--~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~ 398 (1974)
.-...|++.+-++|..--..|-..|++.++.|++-|. ..|+ -..-+-.-+.|.++|-=|.|.-.+.+|+-++....-
T Consensus 600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~-~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETK-ELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHH-HHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 3467899999999987778888999999999999887 2232 233445567899999999999999999999987521
Q ss_pred -----CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHH---HhhhCCCCHHHHHHHHHHHH
Q 000166 399 -----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLA 470 (1974)
Q Consensus 399 -----~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l---~k~l~Ds~~~VR~aA~~~l~ 470 (1974)
-++.++++.+...|.+|.-.|-..|..|+...-.+.+.-.. .+.++-++ +..|--.+.++|.+|.+.+|
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~---~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG---VREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC---HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 24668888899999999999999999999876555443211 14555554 45567789999999999999
Q ss_pred HHHHHhCh-hHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCC
Q 000166 471 AIAKSVGM-RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVS 549 (1974)
Q Consensus 471 ~lmk~~Ge-~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~ 549 (1974)
-|.+.+|. +.+..++++|+- +|.-.... +.- . .+
T Consensus 756 ~Is~aiGPqdvL~~LlnnLkv------qeRq~Rvc----tsv-----a---------------------I~--------- 790 (975)
T COG5181 756 CISRAIGPQDVLDILLNNLKV------QERQQRVC----TSV-----A---------------------IS--------- 790 (975)
T ss_pred hHHhhcCHHHHHHHHHhcchH------HHHHhhhh----hhh-----h---------------------hh---------
Confidence 99999995 556666777753 33222100 000 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHH
Q 000166 550 AAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQV 629 (1974)
Q Consensus 550 ~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v 629 (1974)
-+ .++ +.
T Consensus 791 --iV-------------------------------ae~-------------cg--------------------------- 797 (975)
T COG5181 791 --IV-------------------------------AEY-------------CG--------------------------- 797 (975)
T ss_pred --hh-------------------------------Hhh-------------cC---------------------------
Confidence 00 000 00
Q ss_pred HhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHH
Q 000166 630 EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLT 707 (1974)
Q Consensus 630 ~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~ 707 (1974)
+-.+|--.++ .+.-.|..||+.+|..++.+.+.-+.-+...++.+.|-+-|-+.|. -.|..+.++++
T Consensus 798 --------pfsVlP~lm~---dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~ 866 (975)
T COG5181 798 --------PFSVLPTLMS---DYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIR 866 (975)
T ss_pred --------chhhHHHHHh---cccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHH
Confidence 0011111111 2455677888999999888888777788899999999999999985 46778888777
Q ss_pred HHHHh---hchHhHHHHHHHhhhh---cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHH
Q 000166 708 TFSEA---VGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIK 781 (1974)
Q Consensus 708 ~~aE~---~~p~~V~~~l~~~~~~---~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~ 781 (1974)
-++=- ++-.=.+=+++..++- --.|-|+....+.|..+-.-.|. .++.+|+-. ||=|....||+.=-.
T Consensus 867 Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~-----g~~m~Yv~q-GLFHPs~~VRk~ywt 940 (975)
T COG5181 867 HLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS-----GAMMKYVQQ-GLFHPSSTVRKRYWT 940 (975)
T ss_pred HHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc-----HHHHHHHHH-hccCchHHHHHHHHH
Confidence 76543 3333334445544432 34788877666555544443354 588889887 699999999999999
Q ss_pred HHHHHHhhhCchhHhhh---hcchHHHHHHHH
Q 000166 782 LLGALHKFVGPDIKGFL---ADVKPALLSALD 810 (1974)
Q Consensus 782 Ll~~ly~~~G~~l~~~l---~dlkpall~~Ie 810 (1974)
..-.||.+-.+++-+|+ +|.+|-+..+|+
T Consensus 941 vyn~myv~~~damvp~ypv~~d~n~e~~~~l~ 972 (975)
T COG5181 941 VYNIMYVFDSDAMVPCYPVEEDLNPELARTLH 972 (975)
T ss_pred HHhhhhhcccccccccccCCCCcCHHHHhhhh
Confidence 99999999999999888 677888777664
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0022 Score=80.39 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=123.1
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc---cchHHHHhhhc---cchhHhHHHHHHHHHHHHHHhcCh
Q 000166 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT---GELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGP 928 (1974)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~---geL~~aLk~Rl---~DsNk~lv~~al~ii~~lA~amG~ 928 (1974)
+..+.+.++||-+--||.|--++++++.+ .+..+.+ -.++..|.+++ -++|.+= -.|-=+..++.|+|+
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~---l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rk--GgLiGlAA~~iaLg~ 76 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKD---LVNNNDYDQIRKVISELAGDYAYSPHANMRK--GGLIGLAAVAIALGI 76 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHH---HHccCcHHHHHHHHHHHHHHhccCccccccc--chHHHHHHHHHHhcc
Confidence 45677889999999999999999999974 4445543 23555566666 2454433 344444556677899
Q ss_pred hHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHh----cccCCcchHHHHHHHHHHHhc
Q 000166 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALT----DAKLGAEGRKDLFDWLSKQLT 1002 (1974)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~----~~~~~p~~R~e~l~wL~~~l~ 1002 (1974)
+-.+|...++|||+.||+|+--.||--|-++|.-++..+- .-.+++.|.++|- +.-.|..+=.|++.-|.+-..
T Consensus 77 ~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIV 156 (675)
T KOG0212|consen 77 KDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIV 156 (675)
T ss_pred ccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhc
Confidence 9888999999999999999999999999999999998874 3344667777774 222355566788887776665
Q ss_pred cCCCCcchhhhhhhHhhh-ccCCChHHHHH
Q 000166 1003 GLSGFPDAAHLLKPASIA-MTDKSSDVRKA 1031 (1974)
Q Consensus 1003 ~~~~~~~~~~~~~p~~~~-L~Dr~~dVRka 1031 (1974)
......--.+-..|++.| |-+.++.+|..
T Consensus 157 te~~~tFsL~~~ipLL~eriy~~n~~tR~f 186 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIYVINPMTRQF 186 (675)
T ss_pred cccccccCHHHHHHHHHHHHhcCCchHHHH
Confidence 544432224445565554 78889999964
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=86.19 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=154.2
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000166 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l 368 (1974)
-...|.|..|-...++|.-+-.|.. ++..-...+.+++=++-+-+..-+-.|...|+.|++.|...+......-...++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999988765 555556668888888888888999999999999999999999999888999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC-hhHHhHhhhhhH
Q 000166 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYV 447 (1974)
Q Consensus 369 ~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~-~~~~~~~~k~~~ 447 (1974)
-.||-|-.+-|..|||.+..||.++..+ .+...++..+..+++|.||.+|.-...-+.+|+.... .......+...+
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999986 8899999999999999999999988888888887653 112223456778
Q ss_pred HHHHhhhCCCCHHHHHHHHHHH
Q 000166 448 PICMECLNDGTPEVRDAAFSVL 469 (1974)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l 469 (1974)
+.+-.-+.|+-|++|++|-..+
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~ 272 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVR 272 (334)
T ss_pred HHHHhhhcccccccccchhHHH
Confidence 9999999999999999887544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0026 Score=76.76 Aligned_cols=252 Identities=14% Similarity=0.092 Sum_probs=145.5
Q ss_pred HHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHH
Q 000166 708 TFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1974)
Q Consensus 708 ~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly 787 (1974)
.-+.....++ +++.+ .+.++.|+.+++..| ..+|- ..+++.+..+ +.+.|+.||..|+..||.+-
T Consensus 18 ~~~~~~~~~~----L~~~L-~d~d~~vR~~A~~aL----~~~~~-----~~~~~~l~~l-l~~~d~~vR~~A~~aLg~lg 82 (280)
T PRK09687 18 SQCKKLNDDE----LFRLL-DDHNSLKRISSIRVL----QLRGG-----QDVFRLAIEL-CSSKNPIERDIGADILSQLG 82 (280)
T ss_pred HHHhhccHHH----HHHHH-hCCCHHHHHHHHHHH----HhcCc-----chHHHHHHHH-HhCCCHHHHHHHHHHHHhcC
Confidence 3444444444 44442 788999998877664 34453 3556666667 88899999999999998853
Q ss_pred hh------hCchhHhh-hhcchHHHH-HHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHH
Q 000166 788 KF------VGPDIKGF-LADVKPALL-SALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV 859 (1974)
Q Consensus 788 ~~------~G~~l~~~-l~dlkpall-~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~ 859 (1974)
.- .-+.|..+ +.|--+... +.+.+ ....... . ++-+..+.+.+.
T Consensus 83 ~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~a-LG~~~~~-----------------------~----~~~~~~a~~~l~ 134 (280)
T PRK09687 83 MAKRCQDNVFNILNNLALEDKSACVRASAINA-TGHRCKK-----------------------N----PLYSPKIVEQSQ 134 (280)
T ss_pred CCccchHHHHHHHHHHHhcCCCHHHHHHHHHH-Hhccccc-----------------------c----cccchHHHHHHH
Confidence 21 11112222 122212211 11111 1111000 0 000111233455
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhH
Q 000166 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (1974)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~ 939 (1974)
.-+.|++|.+|..+...+..+= . .+.+.+|...|.|.|..|-..|+..+|.+ + -......+
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~~----------~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~----~~~~~~~~ 195 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVIN----------D-EAAIPLLINLLKDPNGDVRNWAAFALNSN----K----YDNPDIRE 195 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhccC----------C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C----CCCHHHHH
Confidence 5678888888888888884331 1 55777888888888887777776666655 1 11235667
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhh
Q 000166 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI 1019 (1974)
Q Consensus 940 ~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~ 1019 (1974)
.++..|.|....||.+|+.+|-.+ |-...+|.+...|.++. .|.++ .+.|..+... ..+.++..
T Consensus 196 ~L~~~L~D~~~~VR~~A~~aLg~~----~~~~av~~Li~~L~~~~----~~~~a----~~ALg~ig~~----~a~p~L~~ 259 (280)
T PRK09687 196 AFVAMLQDKNEEIRIEAIIGLALR----KDKRVLSVLIKELKKGT----VGDLI----IEAAGELGDK----TLLPVLDT 259 (280)
T ss_pred HHHHHhcCCChHHHHHHHHHHHcc----CChhHHHHHHHHHcCCc----hHHHH----HHHHHhcCCH----hHHHHHHH
Confidence 788888888888888888888663 44577788888887542 34433 3344444331 23344445
Q ss_pred hcc-CCChHHHHHHHHHHH
Q 000166 1020 AMT-DKSSDVRKAAEACIV 1037 (1974)
Q Consensus 1020 ~L~-Dr~~dVRkaA~~~L~ 1037 (1974)
.+. +.++.||..|-++|.
T Consensus 260 l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 260 LLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHhhCCChhHHHHHHHHHh
Confidence 553 667888887776653
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.37 Score=63.21 Aligned_cols=649 Identities=16% Similarity=0.186 Sum_probs=331.4
Q ss_pred hhhhhhhh---hcCCCCHH-HHHHHHHHHHHHHHHcChhhh-hhhhHHHHHHHhhhhc--CChhhHHHHHHHHHHHHhhc
Q 000166 52 ELGPLFKK---TVADSNAP-VQDKALDALIAYLKAADADAG-RYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE 124 (1974)
Q Consensus 52 ~~~~l~kk---~v~DsN~~-aqEk~leal~~~l~~a~~~~~-~~~~~v~~~lveK~L~--~r~ktk~~a~e~~l~~vE~e 124 (1974)
.|++++.. .+.|.++. .-+..+||+-..++-.++..- ....+++.+||-=... +-..-+-.|..|++.-.|..
T Consensus 126 ~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~ 205 (859)
T KOG1241|consen 126 QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFT 205 (859)
T ss_pred hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHH
Confidence 35666654 48888888 778889998776666555321 2234455555443222 12233345666666655553
Q ss_pred h--------hhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC--hhHHHhhchhhhcCCChhHHHHHHHHHHH
Q 000166 125 A--------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQDQNVRASSKGLTLE 194 (1974)
Q Consensus 125 ~--------~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~--~K~ilk~l~~lf~h~dk~VR~ea~~L~ve 194 (1974)
+ ...+.++...++..---+|.++++.++..++.-|=-..-+ -+.++..--..|-+.|..|--.|+.+-..
T Consensus 206 ~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 206 KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 2 1244555566666666788888888888887755321110 11222222222335566666555554332
Q ss_pred HHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHh--hhhhcccCCCCCCCCCC----CCCCC-
Q 000166 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKEL--GQELISEDVGPGPSEES----TADVP- 267 (1974)
Q Consensus 195 lyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~--~~~a~~~~~~~~~~~~~----~~~~~- 267 (1974)
++ +. .-++ .-|+.+++++... |.-.+|.|+.-.--. --+...- -+.+.+++. .+.+.
T Consensus 286 ic----eE---------EiD~-~~e~~e~~d~~~~-p~~~~fa~~a~~~v~P~Ll~~L~k-qde~~d~DdWnp~kAAg~C 349 (859)
T KOG1241|consen 286 IC----EE---------EIDL-AIEYGEAVDQGLP-PSSKYFARQALQDVVPVLLELLTK-QDEDDDDDDWNPAKAAGVC 349 (859)
T ss_pred HH----HH---------HHHH-HHHHHHHhhcCCC-chhhHHHHHHHhHhhHHHHHHHHh-CCCCcccccCcHHHHHHHH
Confidence 22 11 0011 1234444443211 112445554322000 0000000 000000000 00000
Q ss_pred ----CCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcC---CCCCCChhHHHHHHHHHhcchhHH
Q 000166 268 ----PEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIA 340 (1974)
Q Consensus 268 ----~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~p---Ki~~~dy~dL~~~Lkk~l~DsNv~ 340 (1974)
...=-.|++++| + +.+.+++.+++|..|-.|.=.+--++.-| ++.+- -.+.+..+-..+.|+++.
T Consensus 350 L~l~A~~~~D~Iv~~V-----l--~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i-V~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 350 LMLFAQCVGDDIVPHV-----L--PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI-VIQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHhcccchhhh-----H--HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH-HhhhhHHHHHHhcCchhh
Confidence 000012445544 2 34445999999999999988877665422 33321 234566666777799999
Q ss_pred HHHHHHHHHHHHHHHhccccc--cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCch
Q 000166 341 VAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPL 418 (1974)
Q Consensus 341 vv~~A~~~i~~LA~gLr~~F~--~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~ 418 (1974)
|--.++-+++.+++.+..... -|...+++.+++-+.|- |.|....--|+-.+ .|.+-++.-.. ++
T Consensus 422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~L-----------aea~~eA~~s~-~q 488 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISL-----------AEAAYEAAVSN-GQ 488 (859)
T ss_pred hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHH-----------HHHHHHhccCC-CC
Confidence 999999999999999985433 35666677777777664 33333222222222 22222211111 11
Q ss_pred hHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhC--C-CCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHH
Q 000166 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN--D-GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495 (1974)
Q Consensus 419 vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~--D-s~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~K 495 (1974)
- ++..++...++..|++..+ | .+...|-+|+++|+++++..-. ...+.+.++-..-+.|
T Consensus 489 t-----------------~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~-~vy~~v~~~~l~il~k 550 (859)
T KOG1241|consen 489 T-----------------DPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD-DVYPMVQKLTLVILEK 550 (859)
T ss_pred C-----------------CccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHHH
Confidence 1 0111223455666666654 3 5678999999999999998774 4667777788888888
Q ss_pred HHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000166 496 LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETS 575 (1974)
Q Consensus 496 I~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s 575 (1974)
+.+++.+..- .-
T Consensus 551 l~q~i~~~~l----~~---------------------------------------------------------------- 562 (859)
T KOG1241|consen 551 LDQTISSQIL----SL---------------------------------------------------------------- 562 (859)
T ss_pred HHHHHHHHhc----cH----------------------------------------------------------------
Confidence 9888863100 00
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccc
Q 000166 576 KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEK 655 (1974)
Q Consensus 576 ~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~Pgwkes 655 (1974)
+......|++..+-..+. .++..+.+ .+ .+-.|.-...++|.|.. +.|
T Consensus 563 ----------~dr~q~~eLQs~Lc~~Lq-~i~rk~~~----~~-------------~~~~d~iM~lflri~~s----~~s 610 (859)
T KOG1241|consen 563 ----------ADRAQLNELQSLLCNTLQ-SIIRKVGS----DI-------------REVSDQIMGLFLRIFES----KRS 610 (859)
T ss_pred ----------hhHHHHHHHHHHHHHHHH-HHHHHccc----cc-------------hhHHHHHHHHHHHHHcC----Ccc
Confidence 000012333332211110 11111111 00 11112223445555543 333
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhH
Q 000166 656 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735 (1974)
Q Consensus 656 NfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ 735 (1974)
++ |...+|-.+..+++..++-+.+.+..+.|+ +..++.+.----|-
T Consensus 611 ~~-v~e~a~laV~tl~~~Lg~~F~kym~~f~py---------------------------------L~~gL~n~~e~qVc 656 (859)
T KOG1241|consen 611 AV-VHEEAFLAVSTLAESLGKGFAKYMPAFKPY---------------------------------LLMGLSNFQEYQVC 656 (859)
T ss_pred cc-chHHHHHHHHHHHHHHhHhHHHHHHHHHHH---------------------------------HHHHhhcchHHHHH
Confidence 33 444444445545544333222233333333 22222222223344
Q ss_pred HHHHHHHHHHHHHhccCccch-HhHHHHHhhhcCCCccH--HHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000166 736 SEGILWMVSAVEDFGVSHLKL-KDLIDFCKDTGLQSSAA--ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1974)
Q Consensus 736 ae~l~wl~~ai~eFG~~~l~~-K~lI~~~k~~~L~~sN~--~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~E 812 (1974)
..+...++.+-+..+-+.++. ..+...+-.+ |++.|- .|+-.=++++|.+-+-+|.....||+.+=|-+.+.=..+
T Consensus 657 ~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~-Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~ 735 (859)
T KOG1241|consen 657 AAAVGLVGDLARALEDDILPYCDELMTVLVQC-LSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQ 735 (859)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-ccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 444444444444445444433 2444445554 776654 477788889999999999999999987665543321111
Q ss_pred HhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHc-----ccC
Q 000166 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-----NKR 887 (1974)
Q Consensus 813 F~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~a-----nkr 887 (1974)
-++ +.+|. -+.+. +.|+..||....|+..= +..
T Consensus 736 ~d~------------------------~~~~~-----------~dYvd-------~LRe~~leay~gi~qglk~~~~~~~ 773 (859)
T KOG1241|consen 736 TDP------------------------ADDSM-----------VDYVD-------ELREGILEAYTGIIQGLKTHADVML 773 (859)
T ss_pred CCC------------------------CcccH-----------HHHHH-------HHHHHHHHHHHHHHHHhhcccchhh
Confidence 000 00110 01222 45999999999999742 123
Q ss_pred CCCCCccchHHHHhhhc-cchh-HhHHHHHHHHHHHHHHhcChhHHhh
Q 000166 888 IQPAGTGELFGGLRGRL-YDSN-KNLVMATLITLGAVASAMGPAVEKS 933 (1974)
Q Consensus 888 I~p~~~geL~~aLk~Rl-~DsN-k~lv~~al~ii~~lA~amG~~~~k~ 933 (1974)
++|-. +-++.-+.+.= .+.+ -.+...|+.+||.||...|++..++
T Consensus 774 ~~p~v-~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~ 820 (859)
T KOG1241|consen 774 VQPYV-PHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKL 820 (859)
T ss_pred hhcch-HHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhh
Confidence 45543 44555554432 3444 7888999999999999999877654
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.004 Score=77.04 Aligned_cols=366 Identities=17% Similarity=0.185 Sum_probs=230.6
Q ss_pred hhHHHHHHHHHHHhhchHhHHHHHHHhhhh---cCChhhHHHHHHHHHHHHHHhccCc--cchHhHHHHHhhhcCCCccH
Q 000166 699 RAHAMKCLTTFSEAVGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSH--LKLKDLIDFCKDTGLQSSAA 773 (1974)
Q Consensus 699 r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~---~KnPKv~ae~l~wl~~ai~eFG~~~--l~~K~lI~~~k~~~L~~sN~ 773 (1974)
++.-....+++.++..+-|... +.+.|-. .-.||.+.-.+++++...+++-..+ .+-++.-.-.++. +.+..+
T Consensus 81 ~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~s~~t~~~~~s~rkm-~~~~~d 158 (516)
T KOG2956|consen 81 KKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGTSPNTKETKAAIRKM-FPWMFD 158 (516)
T ss_pred HhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCCCCCCCcchhhhhhc-cccccC
Confidence 4444556677777777766655 6665533 3379999999999999998775432 3434433333333 222111
Q ss_pred H-----HHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCC-CCCCc--c--cc-ccccCc-----C--
Q 000166 774 A-----TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPK--K--TV-RASEST-----S-- 835 (1974)
Q Consensus 774 ~-----VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~-~p~p~--R--~~-r~~~~~-----~-- 835 (1974)
. +=...-+.++.+......+++..++++.|-...-.-+-.+-+..++ .|.|. + +. +.+... +
T Consensus 159 ~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a~~e~~~~~~n~~~~~~~~P~~ 238 (516)
T KOG2956|consen 159 PRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSAEKERFDSSNNKPSLPLSPPEE 238 (516)
T ss_pred chhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchhhhcccccccccccccCCChhh
Confidence 1 1112223444555445677888888888877666655555554332 12221 1 10 000000 0
Q ss_pred CCC---------------CCC--------------CCCCCc--cccccCCcHHHHhhcCCC-ChHHHHHHHHHHHHHHHH
Q 000166 836 SVS---------------SGG--------------SDGLPR--EDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEE 883 (1974)
Q Consensus 836 ~~~---------------~~~--------------~d~lpR--vDIs~kit~~l~~~l~d~-~WK~RkEaLe~v~~il~~ 883 (1974)
... .+. .|.+++ +|= ..+..++++++.+. .=-.|++||-++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~-~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e 317 (516)
T KOG2956|consen 239 EKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQ-SALVADLLKEISGSERASERKEALSELPKMLCE 317 (516)
T ss_pred cccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcch-hHHHHHHHHhccCccchhHHHHHHHHHHHHHHc
Confidence 000 000 011222 222 22345677777665 888999999999999975
Q ss_pred cccCCCCCCccchHHHHhhhccc-hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCch-hHHHHHHHHHH
Q 000166 884 ANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLD 961 (1974)
Q Consensus 884 ankrI~p~~~geL~~aLk~Rl~D-sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~-~vR~aa~~ald 961 (1974)
..--+=..-+++|+-.+=..|.| .+-+....||++|+.+.++=-..+.-|+-..+.-+|++=.|.-. .+|.|+-.|+.
T Consensus 318 ~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~ 397 (516)
T KOG2956|consen 318 GSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLT 397 (516)
T ss_pred cchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 31001011167888888899988 88889999999999999999999999999999999999999655 66777777777
Q ss_pred HHHHhccchhhhHHHHHHHhcccCCcchH-HHHHHHHHHHhccCCCC---cchhhhhhhHhhhccCCChHHHHHHHHHHH
Q 000166 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1974)
Q Consensus 962 a~~~~~gl~~~~~~i~~~L~~~~~~p~~R-~e~l~wL~~~l~~~~~~---~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1974)
......++..+. .|...+-+.- +-| .-++..+.+-+...+.- ..+..+++.++..-+..+..|||.|==||.
T Consensus 398 ~las~~P~~~I~-~i~~~Ilt~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 398 TLASHLPLQCIV-NISPLILTAD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred HHHhhCchhHHH-HHhhHHhcCc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 776766765543 3333333211 012 23344566555555431 112223333777889999999999999999
Q ss_pred HHHHhcCHHHHHHHhhccCchhHHHHHHHHHhcc
Q 000166 1038 EILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (1974)
Q Consensus 1038 ~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~ 1071 (1974)
.++..+|.+.|.+++..|-.+.+..|+=.+..+.
T Consensus 474 amv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~ 507 (516)
T KOG2956|consen 474 AMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRAS 507 (516)
T ss_pred HHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhh
Confidence 9999999999999999999888888887777643
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.58 Score=61.51 Aligned_cols=579 Identities=15% Similarity=0.174 Sum_probs=322.1
Q ss_pred HHHHHHHHHHHHhhhc--CCCCCCChhHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHH
Q 000166 300 SERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLE 373 (1974)
Q Consensus 300 keRkEALe~L~~L~~~--pKi~~~dy~dL~~~Lkk~l~--DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~lLe 373 (1974)
--|...||.|-=++.. |.--..-|.+++.++-.-.. ..+..|-..|++|+-.--.=-+.+|..- ...++....|
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 3555677777656642 32222346666666555443 5555555566666544433345567643 5566777778
Q ss_pred HhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHH-----HHHHhhcCCchhHHHHHHHHHHHHhh---------------
Q 000166 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNKVPLVRSLTLNWVTFCIET--------------- 433 (1974)
Q Consensus 374 klKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~-----i~~al~~KnP~vk~etl~~L~r~l~~--------------- 433 (1974)
-.--.-..|+.|+..||..++.-++..+.-.+++ -+.+|++-|+.|..++..|-....+.
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888888999999999999987533344433333 35789999999999999988754431
Q ss_pred CChhHH---hHhhhhhHHHHHhhhC-------CCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcC
Q 000166 434 SSKAAV---LKVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1974)
Q Consensus 434 ~~~~~~---~~~~k~~~~~l~k~l~-------Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~ 503 (1974)
.++... ...++.++|.++++|. |-+=.+-+||..||.-+...+|.+.+...+. -|++.
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~--------Fiee~---- 372 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLP--------FIEEN---- 372 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHH--------HHHHh----
Confidence 111111 1234678888888872 2223467888889998888888776543332 22222
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 000166 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (1974)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~ 583 (1974)
T Consensus 373 -------------------------------------------------------------------------------- 372 (859)
T KOG1241|consen 373 -------------------------------------------------------------------------------- 372 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc--h----hHHHHHHHHHhcCC-C-ccc
Q 000166 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--Q----SVEILVRLVCMLPG-W-SEK 655 (1974)
Q Consensus 584 ~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~--~----~~~~Lvr~l~~~Pg-w-kes 655 (1974)
+.+-||+.|=+|+-.+-..+++.++.. . ..-.++.... +|. | +|+
T Consensus 373 --------------------------i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdT 425 (859)
T KOG1241|consen 373 --------------------------IQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDT 425 (859)
T ss_pred --------------------------cCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-Cchhhhcch
Confidence 222356666666666665555532210 0 0011122221 111 1 222
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhH
Q 000166 656 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735 (1974)
Q Consensus 656 NfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ 735 (1974)
--..+.+.++.+...+ +. ..-++-++.-++.++ +-.|+|-
T Consensus 426 aAwtlgrI~d~l~e~~----------------------~n----------------~~~l~~~l~~l~~gL--~DePrva 465 (859)
T KOG1241|consen 426 AAWTLGRIADFLPEAI----------------------IN----------------QELLQSKLSALLEGL--NDEPRVA 465 (859)
T ss_pred HHHHHHHHHhhchhhc----------------------cc----------------HhhhhHHHHHHHHHh--hhCchHH
Confidence 2222222222222100 00 112223333444443 4556665
Q ss_pred HHHHHHH---HHHHHHhccCc----cch---HhHHHHHhh-hcCCC-ccHHHHHHHHHHHHHHHhhhCchhHhhhhcchH
Q 000166 736 SEGILWM---VSAVEDFGVSH----LKL---KDLIDFCKD-TGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803 (1974)
Q Consensus 736 ae~l~wl---~~ai~eFG~~~----l~~---K~lI~~~k~-~~L~~-sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkp 803 (1974)
+-++--+ .+++-+-+... ..- .++|.-+-+ .-..+ ..-+.|++|-..|++|-++.-.+..+.+..+-+
T Consensus 466 ~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l 545 (859)
T KOG1241|consen 466 SNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTL 545 (859)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 5544332 23333444332 111 122222211 11212 345799999999999999999998888888888
Q ss_pred HHHHHHHHHHh--cCCCCCCCCCccc-cccccCc-----C---CCCCCCCCCCCccccccCCcHHHHhhcCC-CChHHHH
Q 000166 804 ALLSALDAEYE--KNPFEGTVVPKKT-VRASEST-----S---SVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRL 871 (1974)
Q Consensus 804 all~~Ie~EF~--K~~~~~~p~p~R~-~r~~~~~-----~---~~~~~~~d~lpRvDIs~kit~~l~~~l~d-~~WK~Rk 871 (1974)
..+..|+.-.+ .... -.|- .+.=++. + ...+ . .+-.++++|-.-|+.-+++ +.=-+--
T Consensus 546 ~il~kl~q~i~~~~l~~-----~dr~q~~eLQs~Lc~~Lq~i~rk~~--~---~~~~~~d~iM~lflri~~s~~s~~v~e 615 (859)
T KOG1241|consen 546 VILEKLDQTISSQILSL-----ADRAQLNELQSLLCNTLQSIIRKVG--S---DIREVSDQIMGLFLRIFESKRSAVVHE 615 (859)
T ss_pred HHHHHHHHHHHHHhccH-----hhHHHHHHHHHHHHHHHHHHHHHcc--c---cchhHHHHHHHHHHHHHcCCccccchH
Confidence 88887777666 1111 0110 0000000 0 0000 0 2234566777778888887 3345677
Q ss_pred HHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCch
Q 000166 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950 (1974)
Q Consensus 872 EaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~ 950 (1974)
||+=+|..+++...++..--. ..+.+-|-.-| +-.--.|...|..++|.|+.+|+..|-+|+-.++..++.+|+....
T Consensus 616 ~a~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~ 694 (859)
T KOG1241|consen 616 EAFLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNL 694 (859)
T ss_pred HHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccc
Confidence 889899888875432211111 12223333333 3344567788999999999999999999999999999999987543
Q ss_pred --hHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhccc---CCc----------chHHHHHHHHHHHhccCC---CCcch
Q 000166 951 --HMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAK---LGA----------EGRKDLFDWLSKQLTGLS---GFPDA 1010 (1974)
Q Consensus 951 --~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~---~~p----------~~R~e~l~wL~~~l~~~~---~~~~~ 1010 (1974)
+|.-+.+.+..-++.+.| ++.-++++...|...+ .-| ++|..++.--.--+...+ ....+
T Consensus 695 hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~ 774 (859)
T KOG1241|consen 695 HRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLV 774 (859)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhh
Confidence 344456666666666665 4555555555554211 011 266666655333333333 23334
Q ss_pred hhhhhhHhhhc------cCCChHHHHHHHHHHHHHHHhcCHHHH
Q 000166 1011 AHLLKPASIAM------TDKSSDVRKAAEACIVEILRAGGQETI 1048 (1974)
Q Consensus 1011 ~~~~~p~~~~L------~Dr~~dVRkaA~~~L~~~m~~~G~~~~ 1048 (1974)
.+.+.+|++-+ .|-+..+-..|-.++|-+....|.+..
T Consensus 775 ~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~ 818 (859)
T KOG1241|consen 775 QPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVI 818 (859)
T ss_pred hcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchh
Confidence 45566666532 344456677788899999888884433
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.044 Score=69.32 Aligned_cols=177 Identities=21% Similarity=0.235 Sum_probs=126.0
Q ss_pred cccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH---HHhhhccchhHhHHHHHHHHHHHHHH
Q 000166 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG---GLRGRLYDSNKNLVMATLITLGAVAS 924 (1974)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~---aLk~Rl~DsNk~lv~~al~ii~~lA~ 924 (1974)
-+|.+.|||- +.++--|+--..+.=|..|+..+.-.|.+. |-++ .|-.-|+-.||-+-..|-+..|.|+.
T Consensus 687 ~~ilP~ltPI----Lrnkh~Kv~~nti~lvg~I~~~~peyi~~r---EWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 687 SGILPSLTPI----LRNKHQKVVANTIALVGTICMNSPEYIGVR---EWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred hhccccccHh----hhhhhHHHhhhHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 4566667774 345666777788888888887553334332 3222 34445567899999999999999999
Q ss_pred hcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000166 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1974)
Q Consensus 925 amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~ 1004 (1974)
+.||. -++-.++..|+-+.-+.|.+..-++..+++.||.=.++|.+..-...|. .+....+|.-+.=.|.-+
T Consensus 760 aiGPq------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe--~nVQnGvLkam~fmFeyi 831 (975)
T COG5181 760 AIGPQ------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPE--ANVQNGVLKAMCFMFEYI 831 (975)
T ss_pred hcCHH------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCch--hHHHHhHHHHHHHHHHHH
Confidence 99974 4567778888888999999999999999999999999996655555453 334555555443333222
Q ss_pred CC-CcchhhhhhhHhh-hccCCChHHHHHHHHHHHHH
Q 000166 1005 SG-FPDAAHLLKPASI-AMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 1005 ~~-~~~~~~~~~p~~~-~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
.. +.+....+.|++. .|+||++--|.-|..++-.+
T Consensus 832 g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 832 GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 21 3466777788554 89999999999988776544
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.028 Score=75.27 Aligned_cols=382 Identities=20% Similarity=0.196 Sum_probs=247.9
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh--
Q 000166 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-- 402 (1974)
Q Consensus 325 dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~-- 402 (1974)
++.........|.+.+|=..+++=++.+|+++.+ ..-...++|....-..|-+.+||+++.+++..+..+ +.-+
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l--~~~~~d 312 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDL--LDDDDD 312 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHh--cCCchh
Confidence 4445555566799999999999999999999998 334667788888888999999999999999999997 3333
Q ss_pred ---hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChh
Q 000166 403 ---DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1974)
Q Consensus 403 ---~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~ 479 (1974)
.+.+.+..+.+.+...+|.-+..|+...-....+... --...++....+.|...++|-+.+.=...+-..+.+.
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~---~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSAT---RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccC---cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 3456667788899999998888887766554333111 1235788889999999999988876555554444422
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCC
Q 000166 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (1974)
Q Consensus 480 ~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~ 559 (1974)
.+ .+--+..-.-.+++++.... . -++...++...+..|..+
T Consensus 390 ~~---~~i~~~~ilp~~~~lv~d~~---------------------~------~vr~a~a~~~~~~~p~~~--------- 430 (759)
T KOG0211|consen 390 CY---PNIPDSSILPEVQVLVLDNA---------------------L------HVRSALASVITGLSPILP--------- 430 (759)
T ss_pred cc---cccchhhhhHHHHHHHhccc---------------------c------hHHHHHhccccccCccCC---------
Confidence 11 11111111223444443210 0 000000000001111100
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHH--HHhhhccch
Q 000166 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQ--VEAVQNLDQ 637 (1974)
Q Consensus 560 ~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~--v~~~~~~~~ 637 (1974)
+ ++....+-+-.+.++.+-.=..|++.++-+... +......+.
T Consensus 431 -----------k------------------------~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 431 -----------K------------------------ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred -----------c------------------------CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 0 000112233445556666666777777644322 222222333
Q ss_pred hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-CC-CccchhhhccchhhccccchhhhHHHHHHHHHHHhhch
Q 000166 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KF-PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGP 715 (1974)
Q Consensus 638 ~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~-~f-s~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p 715 (1974)
..+.++..+...-+|. |-.|..+.++.+..++...+ .| -.....+|..++.+++-. +|+.+...|..++|.+|.
T Consensus 476 ~s~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~--Ir~~aa~~l~~l~~~~G~ 551 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYS--IREAAARNLPALVETFGS 551 (759)
T ss_pred hhhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHH--HHHHHHHHhHHHHHHhCc
Confidence 4566666555433344 88999999999999887654 33 344556677776665544 467788899999999998
Q ss_pred HhHHHHHHHhh---hhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc
Q 000166 716 GFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (1974)
Q Consensus 716 ~~V~~~l~~~~---~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1974)
+|-...+.... ..+.|-++|.-++.-+..+..-||-. +--+.++.++... ..+++|+||-.+.+.|-.+-.++-.
T Consensus 552 ~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e-i~~~~Llp~~~~l-~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 552 EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE-ITCEDLLPVFLDL-VKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-HHHHHHhHHHHHh-ccCCchhhhhhHHHHHHHHHhhcch
Confidence 88766554422 34667899999999999888888864 7789999999997 9999999999999988766665554
Q ss_pred h
Q 000166 793 D 793 (1974)
Q Consensus 793 ~ 793 (1974)
.
T Consensus 630 ~ 630 (759)
T KOG0211|consen 630 S 630 (759)
T ss_pred H
Confidence 3
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=1.2 Score=61.23 Aligned_cols=649 Identities=15% Similarity=0.167 Sum_probs=370.7
Q ss_pred hcCC-CCCCChhHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHhccc-cc-cchhhhHHHHHHHhccCCHHHHHHHHH
Q 000166 314 STKR-IAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQ 388 (1974)
Q Consensus 314 ~~pK-i~~~dy~dL~~~Lkk~l~--DsNv~vv~~A~~~i~~LA~gLr~~-F~-~y~~~~l~~lLeklKEKK~~V~eA~~~ 388 (1974)
.+|+ +-..-|++....|..++. .+|-.|.-.++.|++.|-.+-... +. .-.+..+-.+|.=.-.+|+.||.+++.
T Consensus 81 ~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~ 160 (1176)
T KOG1248|consen 81 YVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQR 160 (1176)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 4666 334458999999999998 999999999999999998875422 43 226778889999999999999999999
Q ss_pred HHHHHHHhcCCChhh-------hHHHHHHHhhcCC-chhHHHHHHHHH---HHHhhCChhHHhHhhhhhHHHHHhhhCCC
Q 000166 389 TLQAMHKAGCLNLVD-------VVEDVKTSVKNKV-PLVRSLTLNWVT---FCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1974)
Q Consensus 389 aLda~~~~~~~~l~~-------~~e~i~~al~~Kn-P~vk~etl~~L~---r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1974)
++-++....|+-++. +....+.-++.+- +..-..++++|. ..+.+.|.. +++.++..|+.++.-+
T Consensus 161 ~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~----li~sl~e~lL~i~~~s 236 (1176)
T KOG1248|consen 161 GIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRP----LIKSLCEVLLNITTES 236 (1176)
T ss_pred HHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHH----HHHHHHHHHHhhcccc
Confidence 999998743333321 1222222333222 444455555543 222233333 3589999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhh
Q 000166 458 TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 537 (1974)
Q Consensus 458 ~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1974)
+..|+-.+++||..+.+---. .|+...-.++-.++-..+ |+.- .+-. ...=
T Consensus 237 ~v~v~~~~~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps~~---------D~~~-----t~~W 287 (1176)
T KOG1248|consen 237 PVLVLLEVLQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PSEN---------DDLL-----TVAW 287 (1176)
T ss_pred hHHHHHHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CCcc---------chHH-----HHHH
Confidence 999999999999888754332 333333344444332211 0000 0000 0000
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHH
Q 000166 538 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 617 (1974)
Q Consensus 538 ~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~ 617 (1974)
...+.. +... =..+..|-+...+-.+|+ -+.+ +..+.-++
T Consensus 288 ~~v~~~---------------------------------~~~~-----la~~q~~~~~~~~~~~~~-~~~t-~~~s~~~e 327 (1176)
T KOG1248|consen 288 LKVLNE---------------------------------AHDI-----LATLQEEKALQALPRLFS-LFFT-ILESLIEE 327 (1176)
T ss_pred HHHHHH---------------------------------HHHH-----HHHhCHHHHHHhhhhhhh-HHHH-HHhcccHH
Confidence 000000 0000 001112223333322332 2344 77777888
Q ss_pred HHHHHHHHHHHHHhhhc--cchhHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccc
Q 000166 618 RLEAISSLRQQVEAVQN--LDQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (1974)
Q Consensus 618 RL~a~E~l~~~v~~~~~--~~~~~~~-Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlg 694 (1974)
++++.-.....|-.... .+.-|.- +-.++..+ | --|...+|.|+..+.+.++..+....--++.++++.=+
T Consensus 328 ~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~k--f----~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~ 401 (1176)
T KOG1248|consen 328 LVQAASQSLKEILKESVTVIDALCSKQLHSLLDYK--F----HAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRA 401 (1176)
T ss_pred HHHHHHHHHHHHhcccCcccHHHHHHHHHHHHcch--H----HHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhc
Confidence 88876665544433111 1111222 22233221 1 13666777788888887777777777778888877433
Q ss_pred c--chhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH----hHHHHHhhhcC
Q 000166 695 D--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK----DLIDFCKDTGL 768 (1974)
Q Consensus 695 D--~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K----~lI~~~k~~~L 768 (1974)
+ .=.+....+++-+..-+.||+-|+.-+==.+ ++-..+..=.||--+|+++-. +-++- .++..+++ +
T Consensus 402 ~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl----~~~s~~~~RsWLLPvLR~~i~-~A~La~F~~~ivpla~s--l 474 (1176)
T KOG1248|consen 402 SPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL----HAESLSFTRSWLLPVLRDYII-GASLAFFTEYIVPLAMS--L 474 (1176)
T ss_pred CCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc----cccccccchhHhHHHHHHhhc-cCcHHHHHHHHHHHHHH--H
Confidence 3 3355677888888888899988776542222 666777788899999987654 23333 33333332 2
Q ss_pred CCccHHHHHHHHHHHHHHHhhhCchhHhh--------------hhcchHHHHHHHHHH--------------HhcCC---
Q 000166 769 QSSAAATRNATIKLLGALHKFVGPDIKGF--------------LADVKPALLSALDAE--------------YEKNP--- 817 (1974)
Q Consensus 769 ~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~--------------l~dlkpall~~Ie~E--------------F~K~~--- 817 (1974)
.+.-+.+..+....- +|.-++..||.. |.|+=|.+...|..+ .+.+.
T Consensus 475 ~~K~~~l~~~~~~~~--~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~ 552 (1176)
T KOG1248|consen 475 QLKAKKLKEAGSQVS--LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSS 552 (1176)
T ss_pred HHHHHhhhhccCcHH--HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcc
Confidence 222233333332222 444444444432 223333333333221 22220
Q ss_pred -----------------------CCCCCCCcccc-----------c------cccCc--------CCCCCCCCCCCCccc
Q 000166 818 -----------------------FEGTVVPKKTV-----------R------ASEST--------SSVSSGGSDGLPRED 849 (1974)
Q Consensus 818 -----------------------~~~~p~p~R~~-----------r------~~~~~--------~~~~~~~~d~lpRvD 849 (1974)
+.++++..|.. | ...+. +..+++.+ .-
T Consensus 553 ~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~-----~s 627 (1176)
T KOG1248|consen 553 DAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLD-----ES 627 (1176)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccch-----hh
Confidence 11122222110 0 00000 00000000 11
Q ss_pred cccCCcH----------------------HHHhhcCCC-ChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhcc
Q 000166 850 ISGKFTP----------------------TLVKSLESP-DWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLY 905 (1974)
Q Consensus 850 Is~kit~----------------------~l~~~l~d~-~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~Rl~ 905 (1974)
++++++- ++....+.+ +=+++|-+.+=++.++.- ..........-++...|..-+.
T Consensus 628 ~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 628 VASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQ 707 (1176)
T ss_pred hhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh
Confidence 1111111 122233333 677777787777777742 0000111112567788888888
Q ss_pred chhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH--h---cc-------chhhh
Q 000166 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA--A---VH-------LDKMV 973 (1974)
Q Consensus 906 DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~--~---~g-------l~~~~ 973 (1974)
++-.-...-++.|+..|-...+..+..+.--.+|-++-.++|-...-|+-+.+||-.+.. . -| +.+|+
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl 787 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL 787 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 888888899999999999999988888777778888777799999999999999988772 1 13 34455
Q ss_pred HHHHHHHhcccCCcchHHH-HHHH--HHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHH
Q 000166 974 PYVTTALTDAKLGAEGRKD-LFDW--LSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1974)
Q Consensus 974 ~~i~~~L~~~~~~p~~R~e-~l~w--L~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~ 1050 (1974)
..|...|.+.. +..+.- ++.+ +...+.++-...-+..++.-+..+|..++++||++|=..+-.++..+.+..+.+
T Consensus 788 ~~Isagl~gd~--~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~ 865 (1176)
T KOG1248|consen 788 SIISAGLVGDS--TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP 865 (1176)
T ss_pred HHHHhhhcccH--HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 55666655332 333444 3333 333333333333456667778889999999999999999999999999998888
Q ss_pred HhhccCc
Q 000166 1051 NLKDIQG 1057 (1974)
Q Consensus 1051 ~~~~Lk~ 1057 (1974)
+...|=|
T Consensus 866 ~~~~LL~ 872 (1176)
T KOG1248|consen 866 HLEELLP 872 (1176)
T ss_pred hHHHHHH
Confidence 8765543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0022 Score=77.34 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=121.1
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
+.+.+.+.+.....|.+++..|..+- ..+++..+.+.+.|.|..+-..|+.+++.|...=+. ....
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~---------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRG---------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC---------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 46788899999999999999987663 245667777778899999999999999997531110 2346
Q ss_pred HHHHHHH-hccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhh
Q 000166 368 LPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1974)
Q Consensus 368 l~~lLek-lKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1974)
++.+..- ++|+=+.||.++..+|=-+...........++.+..++.+++|.||..+..=|. .... ...
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg----~~~~-------~~a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALS----VIND-------EAA 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHh----ccCC-------HHH
Confidence 6666665 689999999988888866643322234456777778899999999976655553 2221 235
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000166 447 VPICMECLNDGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1974)
++.++.+|+|.+++||..|..+||.+
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 78999999999999999999999988
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.2 Score=67.91 Aligned_cols=177 Identities=13% Similarity=0.094 Sum_probs=128.3
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000166 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1974)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1974)
...|.+.+.|+|=-+|-=||..+-.|.. |..+..+...+++.+.|.|.-|-..|+-|+..+-.--. ... ..
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~-------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv-~~ 177 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRV-------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLF-YQ 177 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccc-cc
Confidence 4568889999999999999999865543 33456788999999999999999999999988854322 111 12
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhc-ccCCcchHHHHHHHHHHHhccCCCCcchh
Q 000166 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTD-AKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011 (1974)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~-~~~~p~~R~e~l~wL~~~l~~~~~~~~~~ 1011 (1974)
..+++.+.+.|.|+.+.|...|+.+|..+.+..+ ++...+.+...+.. +..|++++..+|+.|.+.-+.. ..+..
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~--~~e~~ 255 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD--KESAE 255 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC--cHHHH
Confidence 3467778888999999999999999999987653 22223333333321 2357899999999997754322 23455
Q ss_pred hhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 1012 ~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
.++.-+..+|..+|+.|-=+|-.++-.+...
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 6666777888999998888777776555433
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.03 Score=68.61 Aligned_cols=189 Identities=16% Similarity=0.116 Sum_probs=130.6
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCC---CCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc--cccccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRI---APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi---~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr--~~F~~y 363 (1974)
++.+.+.+|+=+.|.++|+.+..++...-+ ..+.+..|+..+.+.|.=..-.=..+|+++++.++--|| ..-...
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 678888999999999999999887653322 235688999999999972222667789999999999988 333344
Q ss_pred hhhhHHHHHHHhccCCH--HHHHHHHHHHHHHHHhcCCChhhh------HHHHHHH--hh--cC--------CchhHHHH
Q 000166 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNLVDV------VEDVKTS--VK--NK--------VPLVRSLT 423 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~--~V~eA~~~aLda~~~~~~~~l~~~------~e~i~~a--l~--~K--------nP~vk~et 423 (1974)
...+.|.|..-++|.-. .+|.++..||-.+.-.+|...+++ ++.|... .+ .+ +|.+....
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 66777777777777643 455666666665544434444433 3322211 11 11 24555544
Q ss_pred HHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
+.=-.-.+...+...+...+...+|.++.+|+-.+.+||-||.++|+-|.-...
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 443344555556555556668889999999999999999999999999987766
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0086 Score=61.01 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHH
Q 000166 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLT 423 (1974)
Q Consensus 344 ~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et 423 (1974)
-++-++..+|-||++....|...++|++|..|.|.-..||-++-++|-.+... + |.+.
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~---------------------~~~~ 62 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV-A---------------------RGEI 62 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-H---------------------HHHH
Confidence 35678899999999999999999999999999999999999999988888764 1 1111
Q ss_pred HHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000166 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1974)
+.+ ...+...+.+.+.|+++.||.+| +.|..++|
T Consensus 63 l~~----------------f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 63 LPY----------------FNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHH----------------HHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 111 24456778899999999999998 45555543
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.011 Score=60.38 Aligned_cols=54 Identities=30% Similarity=0.413 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000166 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1974)
Q Consensus 915 al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1974)
++-.++.+|.|+|+.+.+|...++|+|+.+|.|+-.-||-+|-++|-.+...++
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999999999999999999998877764
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=5.6 Score=55.26 Aligned_cols=629 Identities=17% Similarity=0.176 Sum_probs=323.7
Q ss_pred CCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHH---------HHHH
Q 000166 318 IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE---------SLTQ 388 (1974)
Q Consensus 318 i~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~e---------A~~~ 388 (1974)
+..+..-.++..|-.+.+-+++.|...+++|+..|-++.-.. -.-.+..-+|..+-+-+|++.+ ++.+
T Consensus 217 ~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~---l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~ 293 (1176)
T KOG1248|consen 217 FPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTA---LAAELNARLLTALMTLSPSENDDLLTVAWLKVLNE 293 (1176)
T ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Confidence 334678889999999999999999999999999998887652 2333344455555555655443 2223
Q ss_pred HHHHHHHhcC-C---ChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHH
Q 000166 389 TLQAMHKAGC-L---NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDA 464 (1974)
Q Consensus 389 aLda~~~~~~-~---~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~a 464 (1974)
+.+.++...- . .+..+..-+.+.+..-++++=+++.+-+.+.++.+.. ... ..|-..+-..|+=+...|-.-
T Consensus 294 ~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~---~~c~~~~~~~l~~kf~~~~~~ 369 (1176)
T KOG1248|consen 294 AHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VID---ALCSKQLHSLLDYKFHAVWRF 369 (1176)
T ss_pred HHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccH---HHHHHHHHHHHcchHHHHHHH
Confidence 3333322100 0 0122334455667788888888888888888876654 111 122335777888888888888
Q ss_pred HHHHHHHHHHHhChh---HHHHHhhcCCHHH-------HHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhh
Q 000166 465 AFSVLAAIAKSVGMR---PLERSIEKLDDVR-------RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV 534 (1974)
Q Consensus 465 A~~~l~~lmk~~Ge~---~l~~~l~~Ld~~k-------k~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1974)
.+..+..+.--+|+. .|.+.|+.|+..+ +..|.+++..+- .+-+ |+
T Consensus 370 ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV------------~AmG-----Pe------- 425 (1176)
T KOG1248|consen 370 ILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAV------------RAMG-----PE------- 425 (1176)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHH------------HhhC-----HH-------
Confidence 888888888888863 3666666666533 334555554310 0000 00
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhcc
Q 000166 535 RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 614 (1974)
Q Consensus 535 ~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~ 614 (1974)
.... ..|- .+....++ +-..+++--|++--
T Consensus 426 -----~vL~------~lpL-----------------------------nl~~~s~~----------~~RsWLLPvLR~~i 455 (1176)
T KOG1248|consen 426 -----RVLT------ILPL-----------------------------NLHAESLS----------FTRSWLLPVLRDYI 455 (1176)
T ss_pred -----HHHH------Hcch-----------------------------hccccccc----------cchhHhHHHHHHhh
Confidence 0000 0000 00000000 00111111111111
Q ss_pred -------HHHHHHH-HHHHHHHHHhhhccch---hHH-HHHHHHHhcCCCccchHHHHH---HHHHHHHHHHHhcCCCCc
Q 000166 615 -------WKERLEA-ISSLRQQVEAVQNLDQ---SVE-ILVRLVCMLPGWSEKNVQVQQ---QVIEVINYLAATATKFPK 679 (1974)
Q Consensus 615 -------WK~RL~a-~E~l~~~v~~~~~~~~---~~~-~Lvr~l~~~PgwkesNfqV~~---k~leil~~la~~~~~fs~ 679 (1974)
|.+..-. .+.+...+..+.+.+. ..| ++.++|.-.|||++.-.-+.. -.+-++....... .+.+
T Consensus 456 ~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr 534 (1176)
T KOG1248|consen 456 IGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELR 534 (1176)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhH
Confidence 1111111 1122222222221111 112 345566778999864443332 3333444333322 2555
Q ss_pred cchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHH-HHhccCccchHh
Q 000166 680 KCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV-EDFGVSHLKLKD 758 (1974)
Q Consensus 680 ~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai-~eFG~~~l~~K~ 758 (1974)
..+...+.-+++..-.++--....+.++.+|--+- -++=.+|......-+ ++..-+..||-.+. ..|-...=++-.
T Consensus 535 ~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL--~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~ 611 (1176)
T KOG1248|consen 535 ETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFL--PRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDVVG 611 (1176)
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHH--HHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 55666666666554222222222333443332211 122223333211112 55666666666666 445443323222
Q ss_pred HHHHHhhhcCCCcc-HHH----HHHHHHHHHHHHhhhCchhHhhhhcchHH-HHHHHHHHHhcCCCCCCCCCcccccccc
Q 000166 759 LIDFCKDTGLQSSA-AAT----RNATIKLLGALHKFVGPDIKGFLADVKPA-LLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1974)
Q Consensus 759 lI~~~k~~~L~~sN-~~V----R~aAi~Ll~~ly~~~G~~l~~~l~dlkpa-ll~~Ie~EF~K~~~~~~p~p~R~~r~~~ 832 (1974)
.+.-.-.. +.+.+ -+| +-+=+.++..+-.+. ++.+. .+-+++.+|++.... -.+.|.-|-=.
T Consensus 612 ~l~~s~~e-~as~~~~s~~~~~~~slLdl~~~~a~~~---------~e~~vs~l~~v~~~~e~~~~~--~vQkK~yrlL~ 679 (1176)
T KOG1248|consen 612 SLKDSAGE-LASDLDESVASFKTLSLLDLLIALAPVQ---------TESQVSKLFTVDPEFENSSST--KVQKKAYRLLE 679 (1176)
T ss_pred HHHHHHHh-HhccchhhhhhHHHHHHHHHHHhhhccc---------cchhHHHHHHhhHHhhccccH--HHHHHHHHHHH
Confidence 22111111 22222 222 222233333332222 22221 222788888887431 11222211100
Q ss_pred Cc-CCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH-HHhh---hccch
Q 000166 833 ST-SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRG---RLYDS 907 (1974)
Q Consensus 833 ~~-~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~-aLk~---Rl~Ds 907 (1974)
+. ...++.+ +-.+-..-|-..+.+-+.+..-=.|+++|..+..|+...+ +..-+++. .+.. -++|-
T Consensus 680 ~l~~~~s~~~----~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-----~e~~~~i~k~I~EvIL~~Ke~ 750 (1176)
T KOG1248|consen 680 ELSSSPSGEG----LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-----AEHCDLIPKLIPEVILSLKEV 750 (1176)
T ss_pred HHhcCCchhh----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHhcccc
Confidence 00 0001100 0000011123345566777788889999999999987542 22123222 2222 22899
Q ss_pred hHhHHHHHHHHHHHHH---HhcChhHHh---hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-c------chhhhH
Q 000166 908 NKNLVMATLITLGAVA---SAMGPAVEK---SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-H------LDKMVP 974 (1974)
Q Consensus 908 Nk~lv~~al~ii~~lA---~amG~~~~k---~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-g------l~~~~~ 974 (1974)
|..--..|..||-.|. ...-.+-++ -..-+++-|-..|......++.+-+-++..++-.- + +..+++
T Consensus 751 n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~ 830 (1176)
T KOG1248|consen 751 NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLIS 830 (1176)
T ss_pred cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 9988899988887777 222222122 12223344444466667777777677777665432 1 345566
Q ss_pred HHHHHHhcccCCcchHHHHHHHHHHHhccCCCC---cchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Q 000166 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (1974)
Q Consensus 975 ~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~---~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~ 1051 (1974)
++.-+|.+. +++.+..+++|+.......+.. +....++.-++.-+.|.+..+|++.-.+|..+++..|++.+...
T Consensus 831 ~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~ 908 (1176)
T KOG1248|consen 831 MVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESF 908 (1176)
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhh
Confidence 777777754 6999999999999888777752 22233344466667888999999999999999999999999998
Q ss_pred hhc
Q 000166 1052 LKD 1054 (1974)
Q Consensus 1052 ~~~ 1054 (1974)
+..
T Consensus 909 ~pe 911 (1176)
T KOG1248|consen 909 LPE 911 (1176)
T ss_pred CHH
Confidence 763
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.36 E-value=5.3 Score=51.40 Aligned_cols=151 Identities=14% Similarity=0.108 Sum_probs=104.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHH----
Q 000166 336 DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVK---- 409 (1974)
Q Consensus 336 DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~---- 409 (1974)
..-..|-..|++|+-.=.--.+.+|..- ...++....|..--.-..+..|+-.||.-++.-.+..+.-.+|-.+
T Consensus 189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt 268 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALT 268 (858)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777766555556777532 5566777788888888899999999999987643455555565433
Q ss_pred -HHhhcCCchhHHHHHHHHHHHHhh-C---------ChhHHh------HhhhhhHHHHHhhhCCCC-------HHHHHHH
Q 000166 410 -TSVKNKVPLVRSLTLNWVTFCIET-S---------SKAAVL------KVHKDYVPICMECLNDGT-------PEVRDAA 465 (1974)
Q Consensus 410 -~al~~KnP~vk~etl~~L~r~l~~-~---------~~~~~~------~~~k~~~~~l~k~l~Ds~-------~~VR~aA 465 (1974)
.+|++.|-+|+.++..|-....+. . +..+.. ...++++|.++++|+..+ =.+-.+|
T Consensus 269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 477899999999999988544432 1 100000 124778999999984322 2367899
Q ss_pred HHHHHHHHHHhChhHHHHHhh
Q 000166 466 FSVLAAIAKSVGMRPLERSIE 486 (1974)
Q Consensus 466 ~~~l~~lmk~~Ge~~l~~~l~ 486 (1974)
..||--+....|...|++.++
T Consensus 349 ~sCLqlfaq~~gd~i~~pVl~ 369 (858)
T COG5215 349 SSCLQLFAQLKGDKIMRPVLG 369 (858)
T ss_pred HHHHHHHHHHhhhHhHHHHHH
Confidence 999999999999988888664
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.022 Score=67.78 Aligned_cols=178 Identities=17% Similarity=0.244 Sum_probs=134.6
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000166 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1974)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1974)
..+++|+|++|-.--+||--+-.+.. =++.+--+.+-+++-++-+-++.-+..|...|.-+++.|.++++..+......
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~-fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSE-FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999986664 23444444467888888888999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcch----hh
Q 000166 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA----AH 1012 (1974)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~----~~ 1012 (1974)
++-.++.+=++.|..||++|..+|.+++.++.-..+++.+..++.+.+ |..|...-.-..++...+...+-. ..
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n--~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSN--PRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhc--hhhhhhhhccccccceeccccchhhHhHHH
Confidence 999999999999999999999999999999999999999999998653 433333222111121111111111 11
Q ss_pred hhhhHhhhccCCChHHHHHHHHHHH
Q 000166 1013 LLKPASIAMTDKSSDVRKAAEACIV 1037 (1974)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1974)
++..+-..+-|+-+++|++|.-++.
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~ 273 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRL 273 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHH
Confidence 2222334578999999998886553
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.66 Score=60.87 Aligned_cols=103 Identities=24% Similarity=0.321 Sum_probs=79.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcCCChh----hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhh
Q 000166 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1974)
Q Consensus 371 lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~----~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1974)
+++.|-+.+...++.+..+|+.++.. ..+. ++.+.+..+|.|.+|.||.-+++=|.|++.........-.-..+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~--~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSA--LSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 77777777777778888888888875 4444 44566778999999999999999999998654321111111558
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 447 VPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
++.++.|+.|.+.+|-+.|..+|..+.++
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999888765
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0074 Score=48.43 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.1
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
++|.++++++|++++||.+|..+|+.|.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.03 Score=60.82 Aligned_cols=113 Identities=29% Similarity=0.503 Sum_probs=84.4
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhh
Q 000166 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1974)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1974)
..+.+.||-. +-.|++..|.. +..-.|.+++|++||...|.+++..||.++..+..=.|..|... .+-|
T Consensus 16 ~~~~~~Dw~~-------~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~f 86 (140)
T PF00790_consen 16 ESLPSPDWSL-------ILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEF 86 (140)
T ss_dssp TTSSS--HHH-------HHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHH
T ss_pred cCCCCCCHHH-------HHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHH
Confidence 3456778853 23344333333 44448999999999999999999999999999999999999765 4567
Q ss_pred hHHHHHHhccCchh----HHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 938 LSDILKCLGDNKKH----MRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 938 ~~~il~~l~D~K~~----vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
+..+...+.+++.. ||+-+++.+..|....+-++-++.|.+...
T Consensus 87 l~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~ 134 (140)
T PF00790_consen 87 LDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYK 134 (140)
T ss_dssp HHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHH
T ss_pred HHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHH
Confidence 77777777766554 899999999999999976666666555543
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=95.63 E-value=7.9 Score=51.06 Aligned_cols=389 Identities=15% Similarity=0.158 Sum_probs=226.1
Q ss_pred cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHH
Q 000166 729 HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSA 808 (1974)
Q Consensus 729 ~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ 808 (1974)
..++.....++..|..++..+-...+ ...+.+++.. ||.|.||.||.-+.+.++-+-..-...+..
T Consensus 49 ~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~------------ 114 (503)
T PF10508_consen 49 TSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAAQL------------ 114 (503)
T ss_pred hcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHHHH------------
Confidence 33788888888888888887766555 5667778877 499999999999988754433211100000
Q ss_pred HHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCC
Q 000166 809 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 888 (1974)
Q Consensus 809 Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI 888 (1974)
+. ...+-+.++.-+.+++=.+-++|...+..|.. ++..
T Consensus 115 ------------------------------------~~----~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~--~~~~ 152 (503)
T PF10508_consen 115 ------------------------------------LV----DNELLPLIIQCLRDPDLSVAKAAIKALKKLAS--HPEG 152 (503)
T ss_pred ------------------------------------hc----CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC--Cchh
Confidence 00 01133456777899999999999999999984 2211
Q ss_pred CCCC-ccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHh
Q 000166 889 QPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1974)
Q Consensus 889 ~p~~-~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~ 966 (1974)
-... -+++...|+.-+..+|-.+...++.++..|+..--..++... .++++.++..|.+.-..|+-.+++.+...+..
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 1111 123377788888666777777788888777655444443332 36999999999999999999999999988875
Q ss_pred c-cchh-----hhHHHHHHHhcccCCc-c------hHHHHHHHHHHHhccCCC--CcchhhhhhhHhhhccCCChHHHHH
Q 000166 967 V-HLDK-----MVPYVTTALTDAKLGA-E------GRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKA 1031 (1974)
Q Consensus 967 ~-gl~~-----~~~~i~~~L~~~~~~p-~------~R~e~l~wL~~~l~~~~~--~~~~~~~~~p~~~~L~Dr~~dVRka 1031 (1974)
- |+.- +++-+...|.+...+| . ++-..++-++.. .+. ......++.-++.+++..+...|-.
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~ 309 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQEVLELYPAFLERLFSMLESQDPTIREV 309 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Confidence 4 3322 2334555555444455 1 222222222211 110 0112333444566778999999999
Q ss_pred HHHHHHHHHHhc-CHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q 000166 1032 AEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPT 1110 (1974)
Q Consensus 1032 A~~~L~~~m~~~-G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1110 (1974)
|-+.+|.+-... |...+. .+-.+.-...+..+.+..+.
T Consensus 310 A~dtlg~igst~~G~~~L~---~~~~~~~~~~l~~~~~~~~~-------------------------------------- 348 (503)
T PF10508_consen 310 AFDTLGQIGSTVEGKQLLL---QKQGPAMKHVLKAIGDAIKS-------------------------------------- 348 (503)
T ss_pred HHHHHHHHhCCHHHHHHHH---hhcchHHHHHHHHHHHHhcC--------------------------------------
Confidence 999998775443 555541 11111222222222222110
Q ss_pred CCCCCCccccchhhhhhhhhhcccCCCChHHHHh-hhhc-cc--cccCCChhHHHHHHHHHHHhhhHH----HHHhhccc
Q 000166 1111 KGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVR-RF--KFEDPRIEQIQELENDMMKYFRED----LHRRLLST 1182 (1974)
Q Consensus 1111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~-~~~~-kw--~f~~pr~e~ve~L~~q~~~~~~~~----l~~~Lf~~ 1182 (1974)
++ -+-|.| +..+ .| ..++...+++-.+...+-..++.. ++-.+...
T Consensus 349 -~~-------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q 402 (503)
T PF10508_consen 349 -GS-------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ 402 (503)
T ss_pred -Cc-------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 00 000110 0000 01 111122333433333333333322 44455567
Q ss_pred CHHH-HHHHHHHHHHhcCCC-hhhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHH
Q 000166 1183 DFKK-QVDGLEMLQKALPSI-RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (1974)
Q Consensus 1183 Dfk~-~l~al~~l~~~l~~~-~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~ 1243 (1974)
.|-+ |++|+..|....... .-..+.+.-=++.|++=|-.|+|..+..-..++++.+.....
T Consensus 403 PF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 403 PFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 7766 899999988776543 112233344467788779999999999999999987665444
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=12 Score=53.41 Aligned_cols=246 Identities=19% Similarity=0.285 Sum_probs=164.5
Q ss_pred HHHhhhhcCChhhHHHHHHHHHHHHHHhccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh
Q 000166 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (1974)
Q Consensus 722 l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~---~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l 798 (1974)
.+......-||-.|.+.+.||-+.+.-.|-. .+..+.+..---.. |+..|-=+-..|-.=+|-+|-.-|.+++.-|
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~-Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L 900 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHL-LSDNDEFSQDVASRGLGLVYELGDSSLKKSL 900 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHH-hcccHHHHHHHHhcCceEEEecCCchhHHHH
Confidence 3333356779999999999999999999922 34455555333444 9999999999999999999987766666433
Q ss_pred hcchHHHHHHHHHHHhcCCCCCCCCCccccccccC-cCCCCCCCC-----CCCC-ccccccCCcHHH-Hhhc----CCCC
Q 000166 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES-TSSVSSGGS-----DGLP-REDISGKFTPTL-VKSL----ESPD 866 (1974)
Q Consensus 799 ~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~-~~~~~~~~~-----d~lp-RvDIs~kit~~l-~~~l----~d~~ 866 (1974)
=..|+.++-. .|-....-..-|.-. +.. -+..+.||. |+.- .-|+ + -|++ |+=| ...-
T Consensus 901 ---V~sL~~tl~~--Gkr~~~~vs~eTelF--q~G~Lg~Tp~Gg~isTYKELc~LASdl-~--qPdLVYKFM~LAnh~A~ 970 (1702)
T KOG0915|consen 901 ---VDSLVNTLTG--GKRKAIKVSEETELF--QEGTLGKTPDGGKISTYKELCNLASDL-G--QPDLVYKFMQLANHNAT 970 (1702)
T ss_pred ---HHHHHHHHhc--cccccceeccchhcc--cCCcCCCCCCCCcchHHHHHHHHHhhc-C--ChHHHHHHHHHhhhhch
Confidence 2234444433 111100000000000 000 011111110 0000 0000 1 1334 3323 3345
Q ss_pred hHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhc
Q 000166 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946 (1974)
Q Consensus 867 WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~ 946 (1974)
|.-|+=|-=-+.+|..+|.-.++|.. +.|++-|-.==-|-+++|+..-..|-..|-+--..-+++|..-++-.+|-.|+
T Consensus 971 wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred hhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988899986 88887774433799999998888888888887777889999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 000166 947 DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 979 (1974)
Q Consensus 947 D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~ 979 (1974)
++-=-||+|+--||.-....=..+.+.+.|.+.
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~~~~~e~lpel 1082 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPFDQVKEKLPEL 1082 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 999999999999999888877777776654443
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.24 Score=61.61 Aligned_cols=298 Identities=17% Similarity=0.159 Sum_probs=158.0
Q ss_pred cCCCChhHHHHHHHHHHHHhhhcCCCCChhhhhh----------hhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhh
Q 000166 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIREL----------GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (1974)
Q Consensus 20 L~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~----------~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~ 89 (1974)
..|-.=|+|..|.--+..+.+++..-.-.-|+.. +.|+-=.++|.|+-...-++..+.+++..+.. +-.
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~-fls 83 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ-FLS 83 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-HHH
Confidence 3455568999998888877765532111111110 22333359999999999999988777755422 111
Q ss_pred hhhHHHHHHHhhhhcC----ChhhHHHHHHHHHHHHhhchhhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC
Q 000166 90 YAKEVCDAIAAKCLTG----RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (1974)
Q Consensus 90 ~~~~v~~~lveK~L~~----r~ktk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~ 165 (1974)
.+.+ +-.-.|+- -+-..--+..|+++..|.| -.|-++..||.++..+|..--...+.
T Consensus 84 ~a~~----~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p~~~l~ 144 (728)
T KOG4535|consen 84 VAED----TSDHAFTPFSVMIACSIRELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAPYDRLK 144 (728)
T ss_pred HHhc----cCCcCCCchHHHHHHHHHHHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCchHHHH
Confidence 1000 00001110 0000011334444444433 34778888888888888765543332
Q ss_pred ---hhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHH-
Q 000166 166 ---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ- 241 (1974)
Q Consensus 166 ---~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q- 241 (1974)
+-.+...++++..|+|++||-.+..+.+.|- |-..+ +..+|. -| +.+...|.....-
T Consensus 145 ~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v---~t~~~-------~pei~~-~~--------~~~~s~~n~~~~h~ 205 (728)
T KOG4535|consen 145 LSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV---STHAP-------LPEVQL-LL--------QQPCSSSNSATPHL 205 (728)
T ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH---hcCCC-------CHHHHH-Hh--------cCCCccccccCCCC
Confidence 2345678899999999999999888766553 31111 111221 11 1111111110000
Q ss_pred ---hHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhh------hhccC--ChHHHHHHHHHHH
Q 000166 242 ---DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWE------GVKAT--KWSERKDAVAELT 310 (1974)
Q Consensus 242 ---~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~------~l~s~--KWkeRkEALe~L~ 310 (1974)
+-=.+- . .++...+-..+++.....|--++.++--..-+|+.|=|. .+++. -=--|.|+++-|.
T Consensus 206 s~~~~~~~l---~--~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~ 280 (728)
T KOG4535|consen 206 SPPDWWKKL---P--AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLT 280 (728)
T ss_pred CChHHHHhc---C--CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHH
Confidence 000000 0 001100001111222233444455554334444433322 11111 1236899998887
Q ss_pred HhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc
Q 000166 311 KLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361 (1974)
Q Consensus 311 ~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~ 361 (1974)
.+...--+..+-+.+|.|++.+.+.|.--.+-.-+++|+..+..+++....
T Consensus 281 ~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~ 331 (728)
T KOG4535|consen 281 LLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYK 331 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcC
Confidence 776655555566788999999999999999999999999999999985443
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.099 Score=57.19 Aligned_cols=109 Identities=17% Similarity=0.325 Sum_probs=84.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+...||-.= -.||+.-|. ++++.-|.+++|++||...|.+++..||.++..++.-.|+.|-.. .+-|+.
T Consensus 13 l~~~dw~~i-------l~icD~I~~--~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGLI-------LDVCDKVKS--DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHHH-------HHHHHHHhc--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 455789543 334433232 244457999999999999999999999999999999999999865 677888
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 000166 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 979 (1974)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~ 979 (1974)
.+...+.+ .-..|++-++..+..|.....-+.=+..|.+.
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 124 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDL 124 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 88888888 67899999999999999888644444444443
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.036 Score=54.38 Aligned_cols=86 Identities=19% Similarity=0.346 Sum_probs=68.2
Q ss_pred hhHHHHhh-cCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccccccchHHHH
Q 000166 1258 LPCLVEKS-GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV 1336 (1974)
Q Consensus 1258 lP~Lv~K~-Gd~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~~Kal~~i 1336 (1974)
||.|+..+ .|+...||.. .++.++.+. ..++.++|.+.++++|+.+|..++.-||.+ | ..++++.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~---a~~~L~~~~-~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~-----~~~~~~~L 67 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAE---AARALGELG-DPEAIPALIELLKDEDPMVRRAAARALGRI----G-----DPEAIPAL 67 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHH---HHHHHHCCT-HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H-----HHHTHHHH
T ss_pred CHHHHHHHhcCCCHHHHHH---HHHHHHHcC-CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C-----CHHHHHHH
Confidence 68888888 8888888865 555555543 458999999999999999999999999975 3 45678777
Q ss_pred HHHhcc-CChhHHHHHHHHHH
Q 000166 1337 ASLTAE-RDGEIRKAALNTLA 1356 (1974)
Q Consensus 1337 A~~i~d-rD~~VR~AALn~l~ 1356 (1974)
.+++.+ .|..||.+|+.+|+
T Consensus 68 ~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 IKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHhhcC
Confidence 776654 67778999999886
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.023 Score=51.37 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000166 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 417 P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1974)
|.||...+.-|.+.. ........+++..++|.+..+|+|++++||.+|+.+||.|
T Consensus 1 p~vR~~A~~aLg~l~-~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLA-EGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTT-TTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHh-cccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 678888888887733 3333444566788999999999999999999999999864
|
... |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.085 Score=59.61 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCH
Q 000166 380 PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459 (1974)
Q Consensus 380 ~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~ 459 (1974)
+.||.-+.-++--++.....-++..++.+...|.+++|.||..++.-|++.+.+.- .+.-..++..++.++.|+++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHHHcCCCH
Confidence 45666666666555544233356688899999999999999999999999986531 12223345778899999999
Q ss_pred HHHHHHHHHHHHHHHHhChhHH
Q 000166 460 EVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 460 ~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
+||+.|..+|..+.+..+...+
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHH
Confidence 9999999999999988654444
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.11 Score=53.26 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=83.3
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc---CCC-hh-hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHh
Q 000166 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CLN-LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1974)
Q Consensus 366 ~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~---~~~-l~-~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~ 440 (1974)
.+++.+++.+++....++..+..||-.++... +.. +. ++++.+...|.+.+|.++..++..|.+.....+. ...
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED-NKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH-HHH
Confidence 47899999999999999999999988887530 000 22 5678888999999999999999888888765432 222
Q ss_pred Hhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 441 ~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
.+. ..+++.+.+++++.+.++|+.+..+|..+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 223 348999999999999999999999998763
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.11 Score=55.96 Aligned_cols=110 Identities=21% Similarity=0.350 Sum_probs=82.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-.= -.||+.-|.. +.+-.|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 13 l~~~dw~~~-------l~icD~i~~~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWELI-------LEICDLINST--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHHHH-------HHHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 456788643 3344333333 44447999999999999999999999999999999999999765 556888
Q ss_pred HHHHHhccCch--hHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000166 940 DILKCLGDNKK--HMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1974)
Q Consensus 940 ~il~~l~D~K~--~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1974)
.+...+.+... .|++.++..+..|.....-++=++.|.+..
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y 126 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQIVDVY 126 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 77777776544 299999999999999886455555555443
|
Unpublished observations. Domain of unknown function. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.042 Score=56.31 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=83.4
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc-cchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000166 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1974)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~-geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1974)
+.+++-+.+.+|..|..|+..+..+.... +....... .+.++.|..-|.|.|..++..|+.+++.|+..-......+.
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 45778888999999999999999988521 11111111 25677888888999999999999999999986544444444
Q ss_pred -hhhhHHHHHHhccCchhHHHHHHHHHHHHH
Q 000166 935 -KGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1974)
Q Consensus 935 -k~l~~~il~~l~D~K~~vR~aa~~alda~~ 964 (1974)
..+++.+++.+.+....+|..+..+|...+
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 458999999999999999999999887653
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.09 E-value=2.4 Score=52.35 Aligned_cols=261 Identities=20% Similarity=0.192 Sum_probs=166.9
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHH-hhhCchhHh
Q 000166 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH-KFVGPDIKG 796 (1974)
Q Consensus 718 V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly-~~~G~~l~~ 796 (1974)
.+..+++.+ .++++-++..+... +.+ +..+..+.-+.+. +.+.++.||..|+..||.+- ....+.+..
T Consensus 44 ~~~~~~~~l-~~~~~~vr~~aa~~----l~~-----~~~~~av~~l~~~-l~d~~~~vr~~a~~aLg~~~~~~a~~~li~ 112 (335)
T COG1413 44 AADELLKLL-EDEDLLVRLSAAVA----LGE-----LGSEEAVPLLREL-LSDEDPRVRDAAADALGELGDPEAVPPLVE 112 (335)
T ss_pred hHHHHHHHH-cCCCHHHHHHHHHH----Hhh-----hchHHHHHHHHHH-hcCCCHHHHHHHHHHHHccCChhHHHHHHH
Confidence 444555553 45566666555543 223 3344666666666 88888899999988776654 334455555
Q ss_pred hhh-cchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhc------------C
Q 000166 797 FLA-DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL------------E 863 (1974)
Q Consensus 797 ~l~-dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l------------~ 863 (1974)
+++ |.+.-.....-.-+.++..+.. + ..++..+ .
T Consensus 113 ~l~~d~~~~vR~~aa~aL~~~~~~~a--------------------------------~-~~l~~~l~~~~~~~a~~~~~ 159 (335)
T COG1413 113 LLENDENEGVRAAAARALGKLGDERA--------------------------------L-DPLLEALQDEDSGSAAAALD 159 (335)
T ss_pred HHHcCCcHhHHHHHHHHHHhcCchhh--------------------------------h-HHHHHHhccchhhhhhhhcc
Confidence 554 4544444444444444322110 0 0122222 3
Q ss_pred CCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHH
Q 000166 864 SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (1974)
Q Consensus 864 d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~ 943 (1974)
+..|..|..+++.+..+-. .+.+..|+..+.|.+..+...|..-++.+...+ ..+.+.+..
T Consensus 160 ~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~ 220 (335)
T COG1413 160 AALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVK 220 (335)
T ss_pred chHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHH
Confidence 3558899999998876553 567788899999999977777777777766655 567788899
Q ss_pred HhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccC
Q 000166 944 CLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTD 1023 (1974)
Q Consensus 944 ~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~D 1023 (1974)
.++|....||.++..++... |...-.+.+...+.+. ++..+.....|+. ..+......++..-+.|
T Consensus 221 ~~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 286 (335)
T COG1413 221 ALSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLID 286 (335)
T ss_pred HhcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhc
Confidence 99999999999999888665 4555556667777743 3445555555554 11233345567777899
Q ss_pred CChHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000166 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1974)
Q Consensus 1024 r~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1974)
.+..+|..+...++.+-..............-
T Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 318 (335)
T COG1413 287 EANAVRLEAALALGQIGQEKAVAALLLALEDG 318 (335)
T ss_pred chhhHHHHHHHHHHhhcccchHHHHHHHhcCC
Confidence 99999999998887776666655555554443
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.14 Score=50.15 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=68.2
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhh
Q 000166 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1974)
Q Consensus 368 l~~lLekl-KEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1974)
+|.+++.+ +|+-+.||..+..+|- . ..-.+.++.+...+++++|.||..+...|.+. .. ...
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~---~---~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~-------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG---E---LGDPEAIPALIELLKDEDPMVRRAAARALGRI----GD-------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH---C---CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HH-------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH---H---cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC-------HHH
Confidence 57899999 9999999987666665 2 34557889999999999999999999888854 11 346
Q ss_pred HHHHHhhhCC-CCHHHHHHHHHHHH
Q 000166 447 VPICMECLND-GTPEVRDAAFSVLA 470 (1974)
Q Consensus 447 ~~~l~k~l~D-s~~~VR~aA~~~l~ 470 (1974)
++.+.+.+.| .+..||.+|..+||
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888887755 56778999999986
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.12 Score=55.62 Aligned_cols=108 Identities=22% Similarity=0.407 Sum_probs=81.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||..=.|=-| +|+ .. +.+-.|.+++|++||+..|.+++..||.++..+..=.|++|... .+-++.
T Consensus 13 ~~~~D~~~il~icd----~I~---~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWALNLELCD----LIN---LK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHHHHHHHHH----HHh---CC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 45688874433333 332 11 44458999999999999999999999999999999999999764 336777
Q ss_pred HHHHHhccC---chhHHHHHHHHHHHHHHhccch-hhhHHHHH
Q 000166 940 DILKCLGDN---KKHMRECTLTVLDAWLAAVHLD-KMVPYVTT 978 (1974)
Q Consensus 940 ~il~~l~D~---K~~vR~aa~~alda~~~~~gl~-~~~~~i~~ 978 (1974)
.++..+..+ ...||.-+++.+..|....+-+ .-++.+.+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~~~~~~~~~~ 126 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGHSEDLPGIED 126 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCccchHHHH
Confidence 788777764 5689999999999999988754 33444433
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.19 Score=54.83 Aligned_cols=111 Identities=20% Similarity=0.339 Sum_probs=84.9
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
.+...||-.=.|=-|.|. + . +.+-.|.+++|++||...|.+++..||.++..+..-.|..|-.. .+-|+
T Consensus 16 ~l~~~dw~~ileicD~In-----~-~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl 86 (142)
T cd03569 16 LLGEPDLASILEICDMIR-----S-K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFM 86 (142)
T ss_pred ccCccCHHHHHHHHHHHh-----C-C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH
Confidence 346778875444444442 1 1 23337999999999999999999999999999999999999764 66788
Q ss_pred HHHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000166 939 SDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1974)
Q Consensus 939 ~~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1974)
..+...+.+ ..+.|++-++..+..|....+-++=++.|.++.
T Consensus 87 ~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y 129 (142)
T cd03569 87 DELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLKYVVDTY 129 (142)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 888887764 455799999999999999887665555554444
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.42 Score=60.27 Aligned_cols=193 Identities=17% Similarity=0.167 Sum_probs=138.4
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcccCCCC-CCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000166 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1974)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p-~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1974)
+.....+..|+.|--..--+-++..+ +.+.. ..+|+++..|..|..|.|-.+...|+.+++..|++|-.++.+|...
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~~--~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~ 299 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKRP--KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT 299 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhCc--ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH
Confidence 33456778999999888888888842 34441 3369999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHH---HHHHHh--cccCCcchHHHHHHHHHHHhccCCCC---
Q 000166 937 VLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPY---VTTALT--DAKLGAEGRKDLFDWLSKQLTGLSGF--- 1007 (1974)
Q Consensus 937 l~~~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~---i~~~L~--~~~~~p~~R~e~l~wL~~~l~~~~~~--- 1007 (1974)
++-+|+..|=| ....|.-.++.||....+....+.+-++ ++.-+. -...+++.|...+--. ..|......
T Consensus 300 ~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lf-g~L~~l~g~~~e 378 (533)
T KOG2032|consen 300 QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLF-GALAKLAGGGWE 378 (533)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHH-HHHHHHcCCCch
Confidence 99999888876 3467888888888888877765555442 222221 0123577777665432 233333221
Q ss_pred ----cchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh
Q 000166 1008 ----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1974)
Q Consensus 1008 ----~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~ 1053 (1974)
...+.-..|++-.|+|+++-|-+|-...+-+....++-+.......
T Consensus 379 ~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 379 EFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred hhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 1234456788999999999998888877766655555555555554
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.33 Score=59.64 Aligned_cols=185 Identities=17% Similarity=0.157 Sum_probs=116.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHc--ccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcC--hhHHh
Q 000166 857 TLVKSLESPDWKVRLESIEAVNKILEEA--NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAVEK 932 (1974)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~a--nkrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG--~~~~k 932 (1974)
+.+..+.+|+=+.|.+||+.+..++..- ..+|... +.+|..++.+.++-.+..=...|+++++.++.-+| .....
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~-~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDR-RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 4678889999999999999999999631 1123322 36788888888865555667899999999999988 55566
Q ss_pred hhhhhhHHHHHHhccCch--hHHHHHHHHHHHHH--Hhccchhhh---HHHH-----HHHh-ccc---C----Ccc-hHH
Q 000166 933 SSKGVLSDILKCLGDNKK--HMRECTLTVLDAWL--AAVHLDKMV---PYVT-----TALT-DAK---L----GAE-GRK 991 (1974)
Q Consensus 933 ~~k~l~~~il~~l~D~K~--~vR~aa~~alda~~--~~~gl~~~~---~~i~-----~~L~-~~~---~----~p~-~R~ 991 (1974)
....+.|.+...+.|.-. .+|.+++.||-... ...+.+.+. +.|- ..++ +++ + ++. .=.
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 677788888888888653 57788887776443 333344333 2111 1222 111 0 112 223
Q ss_pred HHHHH--HHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 992 DLFDW--LSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 992 e~l~w--L~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
-+-.| |...++...-.......+..+...|+..+.+||.+|-++|.-+...
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 34445 5533322110111233344477788999999999999999766443
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=94.35 E-value=2 Score=55.16 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=146.3
Q ss_pred ccCChHHHHHHHHHHHHhhhcCCCCCC-ChhHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHH
Q 000166 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1974)
Q Consensus 295 ~s~KWkeRkEALe~L~~L~~~pKi~~~-dy~dL~~~Lkk~l-~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lL 372 (1974)
....+-.|.-+++-+-.++ +|+.++ ...+++..+...+ .+.+...-..++.++.-++|||=-+-.+.+..++..++
T Consensus 200 ~~~~~~~~~~~~~~la~Lv--NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLV--NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHH--cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4455889999888766554 346554 4777788777777 57788888899999999999996666788999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHh-c-CCC---------------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000166 373 EKLKEKKPTVAESLTQTLQAMHKA-G-CLN---------------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1974)
Q Consensus 373 eklKEKK~~V~eA~~~aLda~~~~-~-~~~---------------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~ 435 (1974)
+-|.+ +.+...+..++.-++.- . +.+ +..++..+.+..+.-+...|..-+.=|.-.+++.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 66777788888777653 0 101 34566677777777777788888888898999999
Q ss_pred hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000166 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1974)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~ 486 (1974)
+..+...+..++|.++.+|+=.+++||.++.++|-.++.-- ...+..+++
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~ 405 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLS 405 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 98888888999999999999999999999999888888765 444555554
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.83 Score=57.79 Aligned_cols=210 Identities=15% Similarity=0.111 Sum_probs=150.3
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCC-CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~-~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
.|.+.+.+.+|++|.-..--+.++...+.+.+ +..++++-.|..+..|.|-.+-..|+.||+..|.|+......|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 34456889999999987777777766665554 78999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHHHHhcCCChh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh---
Q 000166 368 LPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK--- 436 (1974)
Q Consensus 368 l~~lLeklKEKK-~~V~eA~~~aLda~~~~~~~~l~-------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~--- 436 (1974)
+-.|+--|=|-- ..|.--+..||.-+... .+.. ++...+.+..+.-++++|...+..+.-...-..+
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~--~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e 378 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEK--ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWE 378 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHh--hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCch
Confidence 999988876543 23333334555555443 2222 3334556788899999998887766655432221
Q ss_pred hHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000166 437 AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1974)
Q Consensus 437 ~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1974)
..+.... |.+ ..++-.++|++|-|=.|....+-+..--++-+.+..+..+.-+..+..+.++++
T Consensus 379 ~~Fte~v~k~~-~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn 443 (533)
T KOG2032|consen 379 EFFTEQVKKRL-APLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYN 443 (533)
T ss_pred hhhHHHHHhcc-ccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHH
Confidence 1111112 232 345667899999999888888887777777777777776443555667777765
|
|
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.29 Score=53.39 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=83.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-chhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
+...||-.=.|=-|.| |. ++++.-|.+++|++||. ..|.+++..||.++..++.=.|+.|-.. .+-|+
T Consensus 14 l~~~dw~~ileicD~I-------n~--~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNMEICDII-------NE--TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHHHHHHHH-------hC--CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 4566887544444433 22 34444799999999997 4689999999999999999999999875 56788
Q ss_pred HH-HHHHhccCc---hhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 939 SD-ILKCLGDNK---KHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 939 ~~-il~~l~D~K---~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
.. ++..+.++. ..|++-++..+..|.....-++=++.|.+...
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~ 131 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYE 131 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHH
Confidence 87 677776433 48999999999999998865555555555443
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.71 Score=56.59 Aligned_cols=164 Identities=21% Similarity=0.258 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCCc-cchH---HHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHH
Q 000166 869 VRLESIEAVNKILEEANKRIQPAGT-GELF---GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1974)
Q Consensus 869 ~RkEaLe~v~~il~~ankrI~p~~~-geL~---~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~ 944 (1974)
+..-|||-.+-|.+ +|.+..+ -|+. ..|=.-+.-+-..|...-++++...=.-+|+......+.++.+++-.
T Consensus 71 VH~KaLevY~~IF~----~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpG 146 (307)
T PF04118_consen 71 VHQKALEVYEYIFE----RIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPG 146 (307)
T ss_pred HHHHHHHHHHHHHH----hcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 45678999888884 5666542 3443 44555568888899999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCC------C--------Ccch
Q 000166 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDA 1010 (1974)
Q Consensus 945 l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~------~--------~~~~ 1010 (1974)
|-|...-+-+-+...++.+...+|-+-|...+-..+.+ ||..|.-++.|+.++++... . .++.
T Consensus 147 Lede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (307)
T PF04118_consen 147 LEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP 223 (307)
T ss_pred cccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc
Confidence 99999999999999999999999999898887777773 57899999999999999876 1 2344
Q ss_pred hhhhhhHhhhccCCChHHHHHHHHHHHHH
Q 000166 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 1011 ~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
.-++..+++||+|.+-=|+..+-++|-.-
T Consensus 224 ~Llv~al~~~L~D~~iLVqR~~LDlLl~~ 252 (307)
T PF04118_consen 224 GLLVRALCACLEDENILVQRGFLDLLLSH 252 (307)
T ss_pred cHHHHHHHHHhCCchHHHHHHHHHHHHHh
Confidence 55667799999999999999888777433
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.84 E-value=14 Score=48.70 Aligned_cols=280 Identities=17% Similarity=0.153 Sum_probs=164.8
Q ss_pred hHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhh-CCchhhH
Q 000166 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI-GKDPVKT 206 (1974)
Q Consensus 128 ~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwl-G~~~lk~ 206 (1974)
.+.+.+.......-+.|-..|+..|-++=+ |+|. .|.+.+...+++.+.+-.||.+|.+|+...-.-. |+. ..
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL--~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~--e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKL--SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL--ER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccc--cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc--cc
Confidence 445556666677778999999998866544 7763 4788999999999999999999998875433222 331 01
Q ss_pred HHhhhchHHHHHHHHHHHHhcCCC----CCCcc----------------------------hhh-hHHhHHhhhhhcccC
Q 000166 207 ILFEKMRDTMKKELEVELVNVSGT----ARPTR----------------------------KIR-AEQDKELGQELISED 253 (1974)
Q Consensus 207 ~L~~~Lkp~q~keLe~efek~~~~----~~P~R----------------------------~~R-s~q~~~~~~~a~~~~ 253 (1974)
.- + -.+-.++.|.++... .-..| .+| ..-+.+.....-+.+
T Consensus 272 e~-~-----e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~G 345 (823)
T KOG2259|consen 272 ES-E-----EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSG 345 (823)
T ss_pred hh-h-----hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcC
Confidence 00 1 123344555554210 00000 000 000000000000111
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhh-hcCCCCCCChhHHHHHHHH
Q 000166 254 VGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKK 332 (1974)
Q Consensus 254 ~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~-~~pKi~~~dy~dL~~~Lkk 332 (1974)
.=..|-.-+++.+.++.|. +.+.|.+-=-=..|.-++++-=.-.|+.|++.+..|. +.|++...-+.=|+.
T Consensus 346 ewSsGk~~~advpsee~d~----~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvD---- 417 (823)
T KOG2259|consen 346 EWSSGKEWNADVPSEEDDE----EEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVD---- 417 (823)
T ss_pred CcccCccccccCchhhccc----cccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH----
Confidence 0000000112223333332 3333321110124566666666778999999999975 678887543333555
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHh
Q 000166 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1974)
Q Consensus 333 ~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al 412 (1974)
.++|---.|-..|+..+..|+.-+ .--...++.|++.+-|.-..||+++++-|-.. . ++=-++++.....|
T Consensus 418 MfNDE~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~---~~d~~~i~m~v~~l 488 (823)
T KOG2259|consen 418 MFNDEIEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNA-R---VSDLECIDMCVAHL 488 (823)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C---CCcHHHHHHHHHHH
Confidence 455666667788999999999763 23456799999999999999999999887643 1 22223444444333
Q ss_pred -h--cCCchhHHHHHHHHHHHHhhCCh
Q 000166 413 -K--NKVPLVRSLTLNWVTFCIETSSK 436 (1974)
Q Consensus 413 -~--~KnP~vk~etl~~L~r~l~~~~~ 436 (1974)
+ .|.|+=|-+++.-+.+.=++++.
T Consensus 489 L~~L~kyPqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 489 LKNLGKYPQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHhhhCCCCcHHHHHHHHHHhccChh
Confidence 2 58899999999888887777654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=93.51 E-value=1.7 Score=49.26 Aligned_cols=111 Identities=18% Similarity=0.278 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhH-HHHHHHhhcCCc
Q 000166 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV-EDVKTSVKNKVP 417 (1974)
Q Consensus 339 v~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~-e~i~~al~~KnP 417 (1974)
..|-..++-+++.|+.. |...+-..+|.+..+|.|.-+.||..+..+|.-+...+.+.....+ -.++..+.+.||
T Consensus 2 ~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCH
Confidence 44566777888888754 5556777899999999999999999999999998887656666554 888889999999
Q ss_pred hhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCC
Q 000166 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1974)
Q Consensus 418 ~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1974)
.||..+..|+.+......+..+ ...+|-++..+++.
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNII----YNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhCc
Confidence 9999999999999887434333 44555566666553
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.7 Score=50.40 Aligned_cols=98 Identities=16% Similarity=0.295 Sum_probs=78.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-.=.|--|. | |. +|++.-|-+++|++||...|.+++..||.++..++.=.|+.|... .+-|+.
T Consensus 14 l~~~dw~~ileicD~----I---n~--~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEAIQAFCEQ----I---NK--EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHHHHHHHHH----H---Hc--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 456788643333333 2 21 455546899999999999999999999999999999999999765 577999
Q ss_pred HHHHHhcc------CchhHHHHHHHHHHHHHHhcc
Q 000166 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1974)
Q Consensus 940 ~il~~l~D------~K~~vR~aa~~alda~~~~~g 968 (1974)
.++..+.+ .-..|++-.+..+..|.....
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99998864 347999999999999998875
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.19 E-value=8.4 Score=51.44 Aligned_cols=343 Identities=18% Similarity=0.174 Sum_probs=196.9
Q ss_pred ccchhH-hHHHHHH-HHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhh--hHHHHHH
Q 000166 904 LYDSNK-NLVMATL-ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKM--VPYVTTA 979 (1974)
Q Consensus 904 l~DsNk-~lv~~al-~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~--~~~i~~~ 979 (1974)
|-|||+ ..+-.|+ .||+.||.|=. +..++|+|++...-+..-|+.-.-==|-.+++.-.=-.+ +.+++.+
T Consensus 43 lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~ 116 (968)
T KOG1060|consen 43 LLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKA 116 (968)
T ss_pred HHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhh
Confidence 334544 4455555 57778877533 778999999999999999988887777777766542233 3489999
Q ss_pred HhcccCCcchHHHHHHHHHHHhccCCCCcchhhhh-hhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCch
Q 000166 980 LTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL-KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (1974)
Q Consensus 980 L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~-~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~ 1058 (1974)
|++| ||..|. |-.|.|+.++.+ -..+++ ..+-.|..|-++-||+.|.-+++.+ =.|+|.
T Consensus 117 L~Dp--N~LiRa----sALRvlSsIRvp-~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKL-------------YsLd~e 176 (968)
T KOG1060|consen 117 LKDP--NQLIRA----SALRVLSSIRVP-MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKL-------------YSLDPE 176 (968)
T ss_pred hcCC--cHHHHH----HHHHHHHhcchh-hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHH-------------hcCChh
Confidence 9988 455555 555566666643 223332 3355689999999999999888654 357778
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCC
Q 000166 1059 ALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSN 1138 (1974)
Q Consensus 1059 ~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1138 (1974)
-++.+++++++--.. .+ +. +-+.+.
T Consensus 177 ~k~qL~e~I~~LLaD-----------------------------~s-pl------------------VvgsAv------- 201 (968)
T KOG1060|consen 177 QKDQLEEVIKKLLAD-----------------------------RS-PL------------------VVGSAV------- 201 (968)
T ss_pred hHHHHHHHHHHHhcC-----------------------------CC-Cc------------------chhHHH-------
Confidence 888888888884310 00 00 001111
Q ss_pred hHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCC--------------h--
Q 000166 1139 KEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSI--------------R-- 1202 (1974)
Q Consensus 1139 K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~--------------~-- 1202 (1974)
..|++.=+|.++.+..-..... +.|-.-|--.++=.|.||.+...++ +
T Consensus 202 -----------~AF~evCPerldLIHknyrklC-----~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~ 265 (968)
T KOG1060|consen 202 -----------MAFEEVCPERLDLIHKNYRKLC-----RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRS 265 (968)
T ss_pred -----------HHHHHhchhHHHHhhHHHHHHH-----hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCccc
Confidence 2255545566664422221111 1111111112445566666532110 0
Q ss_pred ------------h-hhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHh-HHhhhhhHHHHhhcC-
Q 000166 1203 ------------K-DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES-EAAVFLPCLVEKSGH- 1267 (1974)
Q Consensus 1203 ------------~-~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~-EA~~flP~Lv~K~Gd- 1267 (1974)
+ ..=+-++|+|+-..==|+..|++|.+.|-... |+|..- +..-|+-.||--+-.
T Consensus 266 ~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~-----------y~lAP~~~~~~i~kaLvrLLrs~ 334 (968)
T KOG1060|consen 266 CNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLF-----------YHLAPKNQVTKIAKALVRLLRSN 334 (968)
T ss_pred ccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHH-----------HhhCCHHHHHHHHHHHHHHHhcC
Confidence 0 00124778888766677889999999865433 333322 444444444443322
Q ss_pred --ChHHHHHHHHHHHHHHhhccCccchHHHHHh-hhccCChhh-HhHHHHHHHHHHHhhcCccccccchHHHHHHHhccC
Q 000166 1268 --NIEKVREKMRELTKQIVNFYSATKTLPYILE-GLRSKNNRT-RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAER 1343 (1974)
Q Consensus 1268 --~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~-glksKN~r~-R~EcL~el~~li~~~G~~v~~~~Kal~~iA~~i~dr 1343 (1974)
.+..|-+.+..+-.+-..+|- ||+-. =+.|+-+-+ ..==|+.|..|+..-.+. --|++.-.+|.+.
T Consensus 335 ~~vqyvvL~nIa~~s~~~~~lF~-----P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~-----~ILrE~q~YI~s~ 404 (968)
T KOG1060|consen 335 REVQYVVLQNIATISIKRPTLFE-----PHLKSFFVRSSDPTQVKILKLEILSNLANESNIS-----EILRELQTYIKSS 404 (968)
T ss_pred CcchhhhHHHHHHHHhcchhhhh-----hhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH-----HHHHHHHHHHhcC
Confidence 344444444444333333221 23211 112333221 222367777777654432 2478999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhch
Q 000166 1344 DGEIRKAALNTLATGYKILGE 1364 (1974)
Q Consensus 1344 D~~VR~AALn~l~~~Y~~~Gd 1364 (1974)
|..|-.+|+.+||-+-..+|.
T Consensus 405 d~~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 405 DRSFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred chhHHHHHHHHHHHHHHhhCc
Confidence 999999999999977665553
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.50 E-value=35 Score=46.09 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc-cchhhhHHHHHHHhccC
Q 000166 301 ERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLKEK 378 (1974)
Q Consensus 301 eRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~-~y~~~~l~~lLeklKEK 378 (1974)
.|+.+-.-+.++-. ++.+... ..++..|+..+.|+|..||+.|+..+..|.+-=+..+. .-...++..+|+++.|=
T Consensus 137 vRktaa~~vakl~~~~~~~~~~--~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec 214 (734)
T KOG1061|consen 137 VRKTAAVCVAKLFDIDPDLVED--SGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC 214 (734)
T ss_pred HHHHHHHHHHHhhcCChhhccc--cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh
Confidence 35555444444422 3444322 35788999999999999999999999999987663222 33566777777777775
Q ss_pred CHHHHHHHHHHHHHHHHhc---CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhC
Q 000166 379 KPTVAESLTQTLQAMHKAG---CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN 455 (1974)
Q Consensus 379 K~~V~eA~~~aLda~~~~~---~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~ 455 (1974)
--.-+- ..|+....|. ...+.++.+.+...++|-|+.|-..+.+++-..+..++. ....+.+.+.|+++.+++
T Consensus 215 ~EW~qi---~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls 290 (734)
T KOG1061|consen 215 TEWGQI---FILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLS 290 (734)
T ss_pred hhhhHH---HHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeec
Confidence 554443 3455555541 123557889999999999999999999999888876654 111234666777776664
Q ss_pred CC
Q 000166 456 DG 457 (1974)
Q Consensus 456 Ds 457 (1974)
-.
T Consensus 291 ~~ 292 (734)
T KOG1061|consen 291 SE 292 (734)
T ss_pred cc
Confidence 33
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.5 Score=55.89 Aligned_cols=119 Identities=20% Similarity=0.127 Sum_probs=87.4
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhH
Q 000166 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (1974)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~ 405 (1974)
.+..|...+.|++-.|-..+++.++.+ .-....+.++.-+++..+.|+.++..+|-..- .+..
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------cChH
Confidence 478888888888887777666666542 23455677888889999999987775555321 2346
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000166 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 406 e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1974)
+-+..+|++..|.||.+.+.-|... . . ...+|.+...+.|.+++||.+|..+++.+
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l-~---~-------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGEL-P---R-------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhh-c---c-------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 7788889999999999888776543 1 1 23456677889999999999999988544
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.81 Score=47.95 Aligned_cols=75 Identities=20% Similarity=0.382 Sum_probs=60.5
Q ss_pred CCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhh--hhhHHHHH-----Hh-ccCchhHHHHHHHHHH
Q 000166 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILK-----CL-GDNKKHMRECTLTVLD 961 (1974)
Q Consensus 890 p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k--~l~~~il~-----~l-~D~K~~vR~aa~~ald 961 (1974)
+....+++.+|++||.+.|-+++..||.++..+..-.|+.|..+.. .++-.++. .. .|.-..||+.+.+.+.
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 4456899999999999999999999999999999999999988743 23333322 12 2456799999999999
Q ss_pred HHH
Q 000166 962 AWL 964 (1974)
Q Consensus 962 a~~ 964 (1974)
.|.
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 996
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.32 E-value=9.3 Score=51.27 Aligned_cols=292 Identities=18% Similarity=0.222 Sum_probs=181.2
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-h
Q 000166 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-V 404 (1974)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~-~ 404 (1974)
|...|++=|..+|..||.+|+..++.|+.. --++-+.|.+-+.++-.|+.||.-+.-|+--+... .-++.+ +
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~------EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK-~P~l~e~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSP------EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK-VPDLVEHF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCH------HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-CchHHHHh
Confidence 567888888899999999999999999843 34788999999999999999999777777777665 233333 4
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhh-----------------CCCCHHHHHHHHH
Q 000166 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-----------------NDGTPEVRDAAFS 467 (1974)
Q Consensus 405 ~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l-----------------~Ds~~~VR~aA~~ 467 (1974)
+......|..|++.|-..++.++.+..+..+. .+. ..+.+++.+++.| .|+.--||
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~----- 253 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR----- 253 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-----
Confidence 45666788999999999999999998876542 222 2244566555443 44444443
Q ss_pred HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCC
Q 000166 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (1974)
Q Consensus 468 ~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p 547 (1974)
+-.+++++|.. |+........++.... +.+ . +
T Consensus 254 -iLrlLriLGq~---------d~daSd~M~DiLaqva----tnt---------------d---------------s---- 285 (866)
T KOG1062|consen 254 -ILRLLRILGQN---------DADASDLMNDILAQVA----TNT---------------D---------------S---- 285 (866)
T ss_pred -HHHHHHHhcCC---------CccHHHHHHHHHHHHH----hcc---------------c---------------c----
Confidence 33445555532 3333333333332210 000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHH
Q 000166 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627 (1974)
Q Consensus 548 ~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~ 627 (1974)
++.. -..+-.|-+. -+.++- .+=+-|.-|+.-+-+
T Consensus 286 ---------------------------skN~-------GnAILYE~V~-TI~~I~----------~~~~LrvlainiLgk 320 (866)
T KOG1062|consen 286 ---------------------------SKNA-------GNAILYECVR-TIMDIR----------SNSGLRVLAINILGK 320 (866)
T ss_pred ---------------------------cccc-------hhHHHHHHHH-HHHhcc----------CCchHHHHHHHHHHH
Confidence 0000 0001111111 111111 122346666666665
Q ss_pred HHHhhhccc--hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHH
Q 000166 628 QVEAVQNLD--QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKC 705 (1974)
Q Consensus 628 ~v~~~~~~~--~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~ 705 (1974)
++...+... .....|.|.+..+| .++++ -+.++-.|+ |=.|+-.|..+-|+
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~------------------~avqr----Hr~tIleCL-----~DpD~SIkrralEL 373 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDP------------------TAVQR----HRSTILECL-----KDPDVSIKRRALEL 373 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCc------------------HHHHH----HHHHHHHHh-----cCCcHHHHHHHHHH
Confidence 554433221 12333444443332 12222 122333333 33567789999999
Q ss_pred HHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccC
Q 000166 706 LTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (1974)
Q Consensus 706 L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~ 752 (1974)
+..+...-...+++.+++.++-+. .+....+|...|+.+.+.|-..
T Consensus 374 s~~lvn~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 374 SYALVNESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHhccccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999998666 9999999999999999999974
|
|
| >KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.57 Score=60.08 Aligned_cols=101 Identities=26% Similarity=0.413 Sum_probs=81.0
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhh
Q 000166 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1974)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1974)
..+.++||-.=.|==|.| + ....+| -|.+++||+|+...|-.++..||.+|..+..=+|..|-.+ .+-|
T Consensus 12 ~~l~~pDWa~NleIcD~I----N--~~~~~~---~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLI----N--STEGGP---KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHHHHHHH----h--cCccCc---HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 356788997655433333 2 122222 5999999999999999999999999999999999999865 5679
Q ss_pred hHHHHHHhccC--chhHHHHHHHHHHHHHHhccc
Q 000166 938 LSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL 969 (1974)
Q Consensus 938 ~~~il~~l~D~--K~~vR~aa~~alda~~~~~gl 969 (1974)
+..++.+++.+ -..||+-++..|++|..+.+-
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 99999999887 458999999999999988763
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=90.83 E-value=4.4 Score=51.90 Aligned_cols=145 Identities=15% Similarity=0.031 Sum_probs=92.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000166 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1974)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1974)
.|+.-+++.+.++|..+++.+.. ++. +-...|+.-|+|.+..|-..|+.++|.+-.. .
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~------r~~------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~ 178 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGA------HRH------DPGPALEAALTHEDALVRAAALRALGELPRR----------L 178 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHh------hcc------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------c
Confidence 46777888999999999976653 221 2234677777899999999999999887644 3
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhh
Q 000166 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1974)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p 1016 (1974)
.+|.+...+.|..+.||.+|+.++-.. |-..-++.+..+...+ ++..+..+..+++.. . ....+..
T Consensus 179 a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~----~----~~~a~~~ 244 (410)
T TIGR02270 179 SESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA----G----GPDAQAW 244 (410)
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC----C----chhHHHH
Confidence 355577779999999999999998333 3333334344433322 223345555554422 1 1134444
Q ss_pred HhhhccCCChHHHHHHHHHHHHH
Q 000166 1017 ASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 1017 ~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
+...+.|.. ||..+-.+|+.+
T Consensus 245 L~~ll~d~~--vr~~a~~AlG~l 265 (410)
T TIGR02270 245 LRELLQAAA--TRREALRAVGLV 265 (410)
T ss_pred HHHHhcChh--hHHHHHHHHHHc
Confidence 555566644 777777777644
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.77 E-value=9.2 Score=50.88 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=80.9
Q ss_pred cccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcC
Q 000166 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG 927 (1974)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG 927 (1974)
.+|..-+.-+++.-+++++.-+|+-+|+=.-.|++.-| ++|++..||+++.++|-.=...+-+.=+.+-..|.
T Consensus 312 ~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN-------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih 384 (948)
T KOG1058|consen 312 EKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN-------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH 384 (948)
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc-------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHH
Confidence 34445556677888999999999999999999997543 69999999999977765411122111122222221
Q ss_pred ---hhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000166 928 ---PAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1974)
Q Consensus 928 ---~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~ 1004 (1974)
-.|--++..++|-+++-++|.....-.+. +..+-+++. + .|.+|..+++-|.+.|+..
T Consensus 385 ~cav~Fp~~aatvV~~ll~fisD~N~~aas~v----------------l~FvrE~ie--k-~p~Lr~~ii~~l~~~~~~i 445 (948)
T KOG1058|consen 385 ACAVKFPEVAATVVSLLLDFISDSNEAAASDV----------------LMFVREAIE--K-FPNLRASIIEKLLETFPQI 445 (948)
T ss_pred HHhhcChHHHHHHHHHHHHHhccCCHHHHHHH----------------HHHHHHHHH--h-CchHHHHHHHHHHHhhhhh
Confidence 24445566666666666776665422222 122223332 1 3566777777776666665
Q ss_pred CC
Q 000166 1005 SG 1006 (1974)
Q Consensus 1005 ~~ 1006 (1974)
++
T Consensus 446 rS 447 (948)
T KOG1058|consen 446 RS 447 (948)
T ss_pred cc
Confidence 54
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.73 E-value=36 Score=45.50 Aligned_cols=253 Identities=17% Similarity=0.159 Sum_probs=160.7
Q ss_pred HHHHHhhchhhhHHHHHHHHhh-----ccCchhHHHHHHHHHHHHHhhCCCc--cC-hhHHHhhchhhhcCCChhHHHHH
Q 000166 117 FMLWVELEAVDVFLDVMEKAIK-----NKVAKAVVPAIDVMFQALSEFGAKI--IP-PKRILKMLPELFDHQDQNVRASS 188 (1974)
Q Consensus 117 ~l~~vE~e~~~~v~e~ll~~~~-----~K~PKvvaaai~~l~~~l~~FG~kv--v~-~K~ilk~l~~lf~h~dk~VR~ea 188 (1974)
+-.|+|....+++-+.++..++ .|+|=++---+..+...+..|--.- .+ +.+++.++=...++.|++||--.
T Consensus 26 ~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrv 105 (892)
T KOG2025|consen 26 LAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRV 105 (892)
T ss_pred HHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHH
Confidence 3445555555555555544444 6888888888888888888876421 11 56678888888888999999777
Q ss_pred HHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCC
Q 000166 189 KGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPP 268 (1974)
Q Consensus 189 ~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~ 268 (1974)
..++--+---+|. +-+.+|++|+..+
T Consensus 106 lqila~l~d~~~e--idd~vfn~l~e~l---------------------------------------------------- 131 (892)
T KOG2025|consen 106 LQILALLSDENAE--IDDDVFNKLNEKL---------------------------------------------------- 131 (892)
T ss_pred HHHHHHHhccccc--cCHHHHHHHHHHH----------------------------------------------------
Confidence 6665544443331 2233444444333
Q ss_pred CCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHH
Q 000166 269 EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQ 347 (1974)
Q Consensus 269 ~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~ 347 (1974)
..++.+.-=-.|.+|+-.|-.+-..|+ ++--++++.|+.+|. |+|--|-..|+-
T Consensus 132 ----------------------~~Rl~Drep~VRiqAv~aLsrlQ~d~~---dee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 132 ----------------------LIRLKDREPNVRIQAVLALSRLQGDPK---DEECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred ----------------------HHHHhccCchHHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 333333333456666655544433222 234567888899998 999999999988
Q ss_pred HHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHH
Q 000166 348 AIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1974)
Q Consensus 348 ~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L 427 (1974)
||.-= ...+|-++||-+|-+..+|.-+ |
T Consensus 187 nI~vd------------nsTlp~IveRarDV~~anRrlv---------Y------------------------------- 214 (892)
T KOG2025|consen 187 NISVD------------NSTLPCIVERARDVSGANRRLV---------Y------------------------------- 214 (892)
T ss_pred hhccC------------cccchhHHHHhhhhhHHHHHHH---------H-------------------------------
Confidence 87532 3457889999999887766421 1
Q ss_pred HHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCC-----HHHHHHHHHHHhc
Q 000166 428 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD-----DVRRNKLSEMIAG 502 (1974)
Q Consensus 428 ~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld-----~~kk~KI~e~~~~ 502 (1974)
.||++....-. .. ++..+-.+-.+|||+.-+||.|+..++..=.-.+.+..+-..|+.|| +...+.|+.++++
T Consensus 215 ~r~lpkid~r~-ls-i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 215 ERCLPKIDLRS-LS-IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred HHhhhhhhhhh-hh-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11222110000 00 12234456689999999999999999988665666666778888886 6677778888875
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=90.45 E-value=2.1 Score=48.78 Aligned_cols=135 Identities=22% Similarity=0.260 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHhc-cccccchhhhHHHH------------HHHhccCCHHHHHHHHHHHHHHHHhcC---------
Q 000166 341 VAVEAIQAIGNLARGLR-THFSGSSRFLLPVL------------LEKLKEKKPTVAESLTQTLQAMHKAGC--------- 398 (1974)
Q Consensus 341 vv~~A~~~i~~LA~gLr-~~F~~y~~~~l~~l------------LeklKEKK~~V~eA~~~aLda~~~~~~--------- 398 (1974)
|-+.|+.|++.|++... +.|..|-..++|.- -=-++|--+.||.++..+|.++... +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g-sk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG-SKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc-cHHHHHHHHh
Confidence 45679999999999964 56888988888876 2235788899999999999998753 1
Q ss_pred --------CChh--------hhHHHHHHHhhc-CCchhHHHHHHHHHHHHhhCChhHHh-HhhhhhHHHHHhhhCCCCHH
Q 000166 399 --------LNLV--------DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (1974)
Q Consensus 399 --------~~l~--------~~~e~i~~al~~-KnP~vk~etl~~L~r~l~~~~~~~~~-~~~k~~~~~l~k~l~Ds~~~ 460 (1974)
++|. ++...+..++.+ +++.+-.++++-|+-.+.++|-.-+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1222 233445666764 46888889999999888887755443 56677888888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 000166 461 VRDAAFSVLAAIAKSV 476 (1974)
Q Consensus 461 VR~aA~~~l~~lmk~~ 476 (1974)
||-++..|++.+.-..
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999887543
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.34 E-value=3.5 Score=53.49 Aligned_cols=186 Identities=17% Similarity=0.187 Sum_probs=134.2
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCC---CCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccc-
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pK---i~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y- 363 (1974)
.-..++.|.+=+.+.++.+.+-++++..+ |...--..++..|-..+. |.|-.+...|+-++..||.|--..-.-+
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 45667788888889999999999876444 332212245666666776 8899999999999999999987665555
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh------HHHHHHHhhcCCc--hhHHHHHHHHHHHHhhCC
Q 000166 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV------VEDVKTSVKNKVP--LVRSLTLNWVTFCIETSS 435 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~------~e~i~~al~~KnP--~vk~etl~~L~r~l~~~~ 435 (1974)
-...+|.++.-+-.....|+|.+.=||-.++.. +..+-|+ ++.++..+.+..+ .+|. +.|.-.-|....
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn--~tW~LsNlcrgk 226 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRN--ATWTLSNLCRGK 226 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHH--HHHHHHHHHcCC
Confidence 345678888999999999999998888888765 3344433 3566666666665 4443 445555554432
Q ss_pred -hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 436 -KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 436 -~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
+++-...++.++|++..++.+.|++|..-|+-++..+...--
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 322234568899999999999999999999988887664433
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.34 Score=38.94 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=25.1
Q ss_pred hhhHhhhccCCChHHHHHHHHHHHHHHHhc
Q 000166 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1974)
Q Consensus 1014 ~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~ 1043 (1974)
+..+..+++|.+++||.+|-.+|+.+++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 345778899999999999999999998864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.96 Score=51.32 Aligned_cols=122 Identities=17% Similarity=0.243 Sum_probs=96.6
Q ss_pred cccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHH---H
Q 000166 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---A 923 (1974)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~l---A 923 (1974)
.|...-| +.|.+.+-.++-=-|-=|.+.+.++|.. +..+|-|-. -.|+..||.-|.-.|..+...+|+++++| .
T Consensus 34 Ldy~~~L-pif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 34 LDYHHYL-PIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred cchhhHH-HHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3433333 3577777666666677788888888887 778899987 89999999999999999999999999999 8
Q ss_pred HhcChhHHhhhhhhhHHHHHHhcc------------CchhHHHHHHHHHHHHHHhccchhh
Q 000166 924 SAMGPAVEKSSKGVLSDILKCLGD------------NKKHMRECTLTVLDAWLAAVHLDKM 972 (1974)
Q Consensus 924 ~amG~~~~k~~k~l~~~il~~l~D------------~K~~vR~aa~~alda~~~~~gl~~~ 972 (1974)
..+|+..-+|-|.++|.+- .|.+ ++.++++-..++|.......|=+.+
T Consensus 112 ~~vG~aLvPyyrqLLp~ln-~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 112 DMVGEALVPYYRQLLPVLN-LFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred hhhhHHHHHHHHHHHHHHH-HHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 8889999999999988654 3333 4478888888888888777775554
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.09 E-value=14 Score=51.47 Aligned_cols=287 Identities=16% Similarity=0.219 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh----hccchhhc
Q 000166 617 ERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL----CLLGISER 692 (1974)
Q Consensus 617 ~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~----~l~~lveK 692 (1974)
.|++|+|-+...-.-. ..+.-.|-++=|+.+. |.|+-.+|+...++.|+.+...-..+....+.. ++|.|-.=
T Consensus 439 tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l--~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYI-DDEVKLDRVLPYFVHL--LMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred hHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHH--hcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 4688888776332221 1122355566666543 899999999999999999887667777666655 45555444
Q ss_pred cccc---hhhhHHHHHHHHHHHh-hchHhHHHHHHH--hhhhcCCh----hhHHH-HHHHHHHHHHHhccCccchHhHHH
Q 000166 693 VADI---KTRAHAMKCLTTFSEA-VGPGFIFERLYK--IMKDHKNP----KVLSE-GILWMVSAVEDFGVSHLKLKDLID 761 (1974)
Q Consensus 693 lgD~---K~r~~a~e~L~~~aE~-~~p~~V~~~l~~--~~~~~KnP----Kv~ae-~l~wl~~ai~eFG~~~l~~K~lI~ 761 (1974)
+.|. -+|-.-..+|-.+|+. +..- .+.+.+. ++.+.-|- +...+ -+.-| .+.+-+
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~rFl-e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-------------~~~V~~ 581 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYRFL-ELTQELRQAGMLNDPNSETAPEQNYNTELQAL-------------HHTVEQ 581 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHHHH-HHHHHHHhcccccCcccccccccccchHHHHH-------------HHHHHH
Confidence 4452 3455555555555552 1111 1111100 01111110 00000 00000 112222
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCC
Q 000166 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (1974)
Q Consensus 762 ~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~ 841 (1974)
.+-.+ |..+.|.||.+=++-++.+|.|.| |...
T Consensus 582 ~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFG-----------------------k~ks----------------------- 614 (1431)
T KOG1240|consen 582 MVSSL-LSDSPPIVKRALLESIIPLCVFFG-----------------------KEKS----------------------- 614 (1431)
T ss_pred HHHHH-HcCCchHHHHHHHHHHHHHHHHhh-----------------------hccc-----------------------
Confidence 33445 566667777777776776665443 2100
Q ss_pred CCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccc-hHHHHhhhccchhHhHHHHHHHHHH
Q 000166 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDSNKNLVMATLITLG 920 (1974)
Q Consensus 842 ~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~ge-L~~aLk~Rl~DsNk~lv~~al~ii~ 920 (1974)
+|. |=+-+++=++|++|.-|-.-.|.+-.+. -++.+--..| |++-|.+-|.|.--.|+..||.++.
T Consensus 615 ND~---------iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls 681 (1431)
T KOG1240|consen 615 NDV---------ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLS 681 (1431)
T ss_pred ccc---------hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHH
Confidence 111 4456778899999999999999987654 3455542233 5666788889999999999999887
Q ss_pred HHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch----hhhHHHHHHHh
Q 000166 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALT 981 (1974)
Q Consensus 921 ~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~----~~~~~i~~~L~ 981 (1974)
.+-+- |-==++|+.-++..++--|-.-..+||.++..-+-++..+.+-. .++|.|-.+|+
T Consensus 682 ~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 682 ILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 77653 22224567777888888888888999999988888888777632 23555666655
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.56 E-value=8.7 Score=50.89 Aligned_cols=184 Identities=18% Similarity=0.212 Sum_probs=128.6
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHh-hhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhh
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKL-ASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L-~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~ 366 (1974)
.|.+.-|+++|==.||-|+--|+++ ++-|- -..+-+.-|+..|.|....|+..|.++|..||+.=.++|=+.+..
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe----Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ 222 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPE----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPL 222 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhH----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHH
Confidence 4677889999999999999999985 45332 122335567888889999999999999999999888877666655
Q ss_pred hHHHH--------------------------HHHhccCCHHHHHH------HHHHHHHHHHhc--------CCChhhhHH
Q 000166 367 LLPVL--------------------------LEKLKEKKPTVAES------LTQTLQAMHKAG--------CLNLVDVVE 406 (1974)
Q Consensus 367 ~l~~l--------------------------LeklKEKK~~V~eA------~~~aLda~~~~~--------~~~l~~~~e 406 (1974)
++--| -.|+=|.=.+..+. +-+|++++.... .-+..-|++
T Consensus 223 ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvq 302 (877)
T KOG1059|consen 223 FYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQ 302 (877)
T ss_pred HHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHH
Confidence 54332 22222333333332 235666665420 011334667
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHH
Q 000166 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLER 483 (1974)
Q Consensus 407 ~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~ 483 (1974)
-+-.++..--|.+|.-.+.-+...+.++++++. ..-..+++||+|.++.||=.|... ++-+|.++.+..
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdL---l~gmVskkNl~e 371 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDL---LYGMVSKKNLME 371 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHH---HHHHhhhhhHHH
Confidence 777888899999999999999999998877654 234568999999999999776655 556666665443
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.45 E-value=83 Score=41.29 Aligned_cols=353 Identities=16% Similarity=0.174 Sum_probs=201.1
Q ss_pred hhhhHHHHHHHhccC-------CHHHHHHHHHHHHHHHHhcCCC--hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC
Q 000166 364 SRFLLPVLLEKLKEK-------KPTVAESLTQTLQAMHKAGCLN--LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1974)
Q Consensus 364 ~~~~l~~lLeklKEK-------K~~V~eA~~~aLda~~~~~~~~--l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~ 434 (1974)
+.-++|.+|.-|--. -=++--|+..||.-+++. |-. +..+++-+-.-+.+.+..-|....--+-..+...
T Consensus 319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~-~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp 397 (858)
T COG5215 319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL-KGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGP 397 (858)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH-hhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence 344677766555322 225667889999988775 321 3334455555566777777766665566666666
Q ss_pred ChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCc
Q 000166 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSA 514 (1974)
Q Consensus 435 ~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~ 514 (1974)
....+.++..+.+|.+...++|+.--|.+.++.|+|.|.-++-+- +.|- ..|-..--+-+.-..+- |.
T Consensus 398 ~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~-i~p~-~Hl~~~vsa~liGl~D~---------p~- 465 (858)
T COG5215 398 CEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI-ISPC-GHLVLEVSASLIGLMDC---------PF- 465 (858)
T ss_pred cHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh-cCcc-ccccHHHHHHHhhhhcc---------ch-
Confidence 677777888889999999999999999999999999999887642 2211 11111111111111110 00
Q ss_pred cccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHH
Q 000166 515 RVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEI 594 (1974)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~ 594 (1974)
+. ....... ....--- | ++ . ..+ +.-+ .-.-
T Consensus 466 -~~-------------~ncsw~~-~nlv~h~-a-----------------------~a-----~---~~~-~S~l-~~fY 496 (858)
T COG5215 466 -RS-------------INCSWRK-ENLVDHI-A-----------------------KA-----V---REV-ESFL-AKFY 496 (858)
T ss_pred -HH-------------hhhHHHH-HhHHHhh-h-----------------------hh-----h---ccc-cchh-HHHH
Confidence 00 0000000 0000000 0 00 0 000 0000 1112
Q ss_pred HHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHH---HhcCCCccchHHHHHHHHHH----
Q 000166 595 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLV---CMLPGWSEKNVQVQQQVIEV---- 666 (1974)
Q Consensus 595 e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~-~~~~~~~~~~Lvr~l---~~~PgwkesNfqV~~k~lei---- 666 (1974)
++.+..++.. +.+...+...|..+++.|...|.- .+. .++++.-+. .++ -|.-.+|+...+..
T Consensus 497 ~ai~~~Lv~~---t~~~~Ne~n~R~s~fsaLgtli~~~~d~---V~~~~a~~~~~~~~k---l~~~isv~~q~l~~eD~~ 567 (858)
T COG5215 497 LAILNALVKG---TELALNESNLRVSLFSALGTLILICPDA---VSDILAGFYDYTSKK---LDECISVLGQILATEDQL 567 (858)
T ss_pred HHHHHHHHHH---HHhhccchhHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHH---HHHHHHHhhhhhhhHHHH
Confidence 2222223222 344466788899999999887765 222 234443322 222 23344444433321
Q ss_pred -HHHHHHhcCCCCccchhhhccchhhcccc-c-hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHH
Q 000166 667 -INYLAATATKFPKKCVVLCLLGISERVAD-I-KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMV 743 (1974)
Q Consensus 667 -l~~la~~~~~fs~~~~~~~l~~lveKlgD-~-K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~ 743 (1974)
+..+-++ ...++..+|-+-+- + -+-+...+++..+-|...|.++++.++-... -|.
T Consensus 568 ~~~elqSN--------~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIs-------------al~ 626 (858)
T COG5215 568 LVEELQSN--------YIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAIS-------------ALS 626 (858)
T ss_pred HHHHHHHH--------HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHH-------------HHH
Confidence 1111111 12244444444443 2 2456678889999999999999999887642 223
Q ss_pred HHH-HHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000166 744 SAV-EDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1974)
Q Consensus 744 ~ai-~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~E 812 (1974)
..+ +.|- .-+..++.|+-.+ |.-++-.|-..|+.|+|.+-.-+|.+++.|-.++--.|.+.|..+
T Consensus 627 ~sl~e~Fe---~y~~~fiPyl~~a-ln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 627 TSLEERFE---QYASKFIPYLTRA-LNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred HHHHHHHH---HHHhhhhHHHHHH-hcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh
Confidence 322 2343 2355788898887 999999999999999999999999999988777766676666544
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.7 Score=59.93 Aligned_cols=202 Identities=16% Similarity=0.168 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCCChhHHHHHHHHHhc-chhHH-HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHh
Q 000166 300 SERKDAVAELTKLASTK--RIAPGDFTEVCRTLKKLIT-DVNIA-VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1974)
Q Consensus 300 keRkEALe~L~~L~~~p--Ki~~~dy~dL~~~Lkk~l~-DsNv~-vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLekl 375 (1974)
-+|+-|.-.|..+.+.- -+. .-|-.|...|-+-+. +.+.+ --...++....++.-|+..|.+ ....+|.++...
T Consensus 748 ~errgael~L~~l~~~fg~sl~-~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLA-AKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFV 825 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHH-HhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhc
Confidence 46777766666554311 110 012223344444443 33333 6667778888888888888888 888999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCC-hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhh
Q 000166 376 KEKKPTVAESLTQTLQAMHKAGCLN-LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1974)
Q Consensus 376 KEKK~~V~eA~~~aLda~~~~~~~~-l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l 454 (1974)
+--=..||-++..|+..+++..|.. +.-+++.+..-++.----+|.+...-+..++...--..+.++.--++|++..++
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~m 905 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRM 905 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhccc
Confidence 9999999999999999999874322 334456666666655555666666666666654322222233344789999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhChhH-------HHHHhhcCCHHHHHHHHHHHhcC
Q 000166 455 NDGTPEVRDAAFSVLAAIAKSVGMRP-------LERSIEKLDDVRRNKLSEMIAGS 503 (1974)
Q Consensus 455 ~Ds~~~VR~aA~~~l~~lmk~~Ge~~-------l~~~l~~Ld~~kk~KI~e~~~~~ 503 (1974)
.|.+..||++|..+++.++.+++... |-+.|-...+.-++-|+.+++.+
T Consensus 906 sd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldps 961 (1549)
T KOG0392|consen 906 SDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDPS 961 (1549)
T ss_pred ccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCcc
Confidence 99999999999999999999998543 55555555566677778777754
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.27 E-value=20 Score=50.11 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=74.9
Q ss_pred cchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhh---hhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHH
Q 000166 687 LGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1974)
Q Consensus 687 ~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~---~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~ 763 (1974)
.+|-|| |-.+|....+-+.-+|=-+|..-|-+++++.+ ...--+-|+.-+|..++.+++---+.-.-++.+++-+
T Consensus 624 TfLNDk--Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v 701 (1431)
T KOG1240|consen 624 TFLNDK--DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDV 701 (1431)
T ss_pred HHhcCc--cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhh
Confidence 334444 45666666666665555555553444443332 3456678888888888888765545445556666655
Q ss_pred hhhcCCCccHHHHHHHHHHHHHHHhhhC---------chhHhhhh
Q 000166 764 KDTGLQSSAAATRNATIKLLGALHKFVG---------PDIKGFLA 799 (1974)
Q Consensus 764 k~~~L~~sN~~VR~aAi~Ll~~ly~~~G---------~~l~~~l~ 799 (1974)
--. |-|.|.=||.++..++.++|+.++ |-|++||+
T Consensus 702 ~Pl-L~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 702 LPL-LCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred hhh-eeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 556 899999999999999999999888 56888885
|
|
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=88.86 E-value=2.3 Score=44.62 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=67.7
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchh--hhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR--FLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~--~~l~~l 371 (1974)
+..++|+ .+.++-.++.. .+..+.+++++|+++|.+.|..++..|+.+++.+.+-=++.|..++. .++..+
T Consensus 13 ~~~p~~~----~i~~i~d~~~~---~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l 85 (115)
T cd00197 13 NMGPDWP----LIMEICDLINE---TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVEL 85 (115)
T ss_pred CCCCCHH----HHHHHHHHHHC---CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHH
Confidence 3445664 44444444432 24568899999999999999999999999999999999999998843 233333
Q ss_pred HHHh-------ccCCHHHHHHHHHHHHHHH
Q 000166 372 LEKL-------KEKKPTVAESLTQTLQAMH 394 (1974)
Q Consensus 372 Lekl-------KEKK~~V~eA~~~aLda~~ 394 (1974)
+ +| ++.-.+|++.+.+.+.+|+
T Consensus 86 ~-~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 86 L-KFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred H-HhhccccccCCCChHHHHHHHHHHHHHh
Confidence 2 22 2346789999999998885
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.21 E-value=1.1e+02 Score=44.57 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHhccccchH------HHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcC-ChHHHHHHHHHHH
Q 000166 1208 VLDILLRWFVLQFCKSNTT------CLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVREKMRELT 1280 (1974)
Q Consensus 1208 ~lDlllkw~tlr~~dtN~~------vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd-~ke~vR~~vr~i~ 1280 (1974)
.++|+...+....-+-++- --.+.+.|+..||-.-.-.-.-|+.--+..+.|||..|+-. ....|-..|-.|+
T Consensus 1025 ~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Il 1104 (1692)
T KOG1020|consen 1025 VLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQIL 1104 (1692)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHH
Confidence 4666666665555444422 23467888888887777777777777888999999999422 3334555566666
Q ss_pred HH-HhhccCccchHHHHH-----hhhccCChhhHhHHHHHHHHHHHh--hcCcc---ccc--cchHHHHHHHhc
Q 000166 1281 KQ-IVNFYSATKTLPYIL-----EGLRSKNNRTRIECVDLVGFLIDH--HGAEI---SGQ--LKSLQIVASLTA 1341 (1974)
Q Consensus 1281 ~~-~~~vyp~skvf~~l~-----~glksKN~r~R~EcL~el~~li~~--~G~~v---~~~--~Kal~~iA~~i~ 1341 (1974)
+. ++++--+|--|-+-+ .-+-.-|-++=.||..-||.+..+ +|+.+ |.. .|.|+.|.....
T Consensus 1105 e~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~ 1178 (1692)
T KOG1020|consen 1105 ECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNN 1178 (1692)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 43 344444455554333 334556778899999999999996 88776 422 466777666543
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.5 Score=42.66 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHH
Q 000166 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (1974)
Q Consensus 911 lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda 962 (1974)
+...|+..+|.++...+..+..|...++|.++..|.|....||.+|..||..
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4567888999988888999999999999999999999999999999988753
|
... |
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=87.70 E-value=2.7 Score=46.21 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=72.4
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+. -.+..=.+.+++|+++|...|.+|+..|+..++.+.+-=|+.|... .+-++..|
T Consensus 13 l~~~dw~~il~icD~I~-------~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL 85 (144)
T cd03568 13 LTSENWGLILDVCDKVK-------SDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQEL 85 (144)
T ss_pred CCCcCHHHHHHHHHHHh-------cCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence 45567854333333322 1223346899999999999999999999999999999999999866 56677776
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKE-KKPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKE-KK~~V~eA~~~aLda~~~~ 396 (1974)
...+.+ .-+.|++-+.+.+..|...
T Consensus 86 ~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 86 KKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 666666 5778888888888888764
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=87.05 E-value=85 Score=39.95 Aligned_cols=314 Identities=16% Similarity=0.214 Sum_probs=183.4
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHh----cCCCccc-hHHHHHHHHHHHHHHHHh---c
Q 000166 609 QLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAAT---A 674 (1974)
Q Consensus 609 ~L~s~~WK~RL~a~E~l~~~v~~~~~~------~~~~~~Lvr~l~~----~Pgwkes-NfqV~~k~leil~~la~~---~ 674 (1974)
||.+++=-.|++||..|...+...+.. ....+++++++.. +++=++. +.++....+..+..+... .
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 466677778999999999888774322 2224555555543 2333443 777888888888877743 2
Q ss_pred CCCCccchhhhccchhhccccch-hhhHHHHHHHHHHH-hhchHhH----HHHHHHhhhh----cCChhhHHHHHHHHHH
Q 000166 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIMKD----HKNPKVLSEGILWMVS 744 (1974)
Q Consensus 675 ~~fs~~~~~~~l~~lveKlgD~K-~r~~a~e~L~~~aE-~~~p~~V----~~~l~~~~~~----~KnPKv~ae~l~wl~~ 744 (1974)
+.++...+..++..+++.+.++. .|..+...|..+++ .+++.++ .++++..+.. -++-=+..|.|.-+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 45666666678888888888865 46777777777776 5666653 2333333222 3445567888888888
Q ss_pred HHHHhccCcc-chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000166 745 AVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1974)
Q Consensus 745 ai~eFG~~~l-~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~ 823 (1974)
.+..|--.-+ ....=++.+-.. +=|+...||+.|+.++-.+-+.+|+. ..+...+.+.|+..-.++
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~---------~~~s~~~~~~~~~~~~~~--- 227 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPN---------KELSKSVLEDLQRSLENG--- 227 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChh---------HHHHHHHHHHhccccccc---
Confidence 8877753211 112222233333 66889999999999999998888842 111122222222110000
Q ss_pred CccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCC-CChHHHHHHHHHHHHHHHHcccCCCCC-CccchHHHHh
Q 000166 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLR 901 (1974)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d-~~WK~RkEaLe~v~~il~~ankrI~p~-~~geL~~aLk 901 (1974)
+ +-.-+.+.+.+-+.+ .+.+.=-..=-.+-.++. ++++.-. .+.+.+....
T Consensus 228 --~-----------------------~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 228 --K-----------------------LIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLG--SSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred --c-----------------------HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhC--CchhhccHhHhHHHHHHH
Confidence 0 000011112222233 122111111112333342 2333332 2477888888
Q ss_pred hhccchhHhHHHHHHHHHHHHHHhcChhH---HhhhhhhhHHHHHHhccCch-----hHHHHHHHHHHH
Q 000166 902 GRLYDSNKNLVMATLITLGAVASAMGPAV---EKSSKGVLSDILKCLGDNKK-----HMRECTLTVLDA 962 (1974)
Q Consensus 902 ~Rl~DsNk~lv~~al~ii~~lA~amG~~~---~k~~k~l~~~il~~l~D~K~-----~vR~aa~~alda 962 (1974)
.+++.+|..+...|+.+=..+.-++.+.- .+..+.+..|+...+.-.+. .+|.+++.++..
T Consensus 281 ~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ 349 (372)
T PF12231_consen 281 KCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCN 349 (372)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhc
Confidence 99999999999999988888877776543 46678888999887765443 456666665543
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=86.58 E-value=1e+02 Score=39.76 Aligned_cols=193 Identities=18% Similarity=0.230 Sum_probs=127.2
Q ss_pred HHHhh-cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000166 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1974)
Q Consensus 857 ~l~~~-l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1974)
.+++- ....++-.|.-+++-+-.++ ||........+++..+...+ ...+......++.++.-|+.|+=-.-.+.+
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~Lv---NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLV---NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 44443 45556999999999998888 57555554566777777777 677777788889999888888733334666
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc--------c--c-----hhhhHHHHHHHhcc--cCCcchHHHHHHHH
Q 000166 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H--L-----DKMVPYVTTALTDA--KLGAEGRKDLFDWL 997 (1974)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~--------g--l-----~~~~~~i~~~L~~~--~~~p~~R~e~l~wL 997 (1974)
..++..+++.|+| +.+...+..++.-.+... + . ..++..+...|.+. ..+...|..-|.=|
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 6778888999999 667777777777666541 1 1 12233333333311 00122344444444
Q ss_pred HHHhccCCC---CcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000166 998 SKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1974)
Q Consensus 998 ~~~l~~~~~---~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1974)
.--+.+.+. .+++..+++-++.+|.=.+++||.++=+.|..++..- .+.+..+++.|
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 444444443 2455555656888998888899999999999888877 77777776654
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.43 E-value=2.2 Score=55.06 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=78.2
Q ss_pred hhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000166 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1974)
Q Consensus 293 ~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~ 370 (1974)
.+...+|--=.|.=|.+..--..+| |.+++|||+|+..|-.|+.+|+.+|+.+.+--|..|... .+-|+..
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~-------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPK-------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4566777655555554433222233 999999999998888999999999999999999999866 6789999
Q ss_pred HHHHhccC--CHHHHHHHHHHHHHHHHh
Q 000166 371 LLEKLKEK--KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 371 lLeklKEK--K~~V~eA~~~aLda~~~~ 396 (1974)
|+.++|.+ =..|++-+...|++|...
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 99999988 456899999999999875
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=86.38 E-value=4.8 Score=44.06 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=75.4
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+. +. +..-.+-+++|+++|+..|.+|+..|+..++.+.+-=|..|... .+.++..|
T Consensus 14 l~~~dw~~ileicD~In---~~----~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 14 NREEDWEAIQAFCEQIN---KE----PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCCCHHHHHHHHHHHH---cC----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 45677865444444432 11 22235899999999999999999999999999999999999877 46788888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKEK------K~~V~eA~~~aLda~~~~ 396 (1974)
+..+..| -+.|++-+.+.+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888653 478999999999999874
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=86.18 E-value=39 Score=40.92 Aligned_cols=138 Identities=19% Similarity=0.280 Sum_probs=103.9
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000166 608 GQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1974)
Q Consensus 608 ~~L~s~~WK~RL~a~E~l~~~v~~~~~---~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~ 684 (1974)
.-|.+.++..|-.|++-|...++..+. .....++|+.++..+ +.| ..++...+..+..++ +...|+...+..
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~r--l~D--~~~~~~~l~gl~~L~-~~~~~~~~~~~~ 80 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSR--LDD--HACVQPALKGLLALV-KMKNFSPESAVK 80 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHH--hcc--HhhHHHHHHHHHHHH-hCcCCChhhHHH
Confidence 467889999999999999988888543 234568888888753 433 234444478788777 468899999888
Q ss_pred hccchhhccccc----hhhhHHHHHHHHHHHhh-------chHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhcc
Q 000166 685 CLLGISERVADI----KTRAHAMKCLTTFSEAV-------GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (1974)
Q Consensus 685 ~l~~lveKlgD~----K~r~~a~e~L~~~aE~~-------~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~ 751 (1974)
++..+.+++... +.|-.+-++|..+.+.. +.+||.. ++..+-.-|.|+..--++..+..++.+|-+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~-~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYG-FIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHH-HHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 998888877664 46888888888887764 5566654 445557799999999999999888887664
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.04 E-value=8.4 Score=52.29 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=49.6
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 408 VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 408 i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
|..-++|.||.+|.-++.++.- + +- ..++..+++++.+|++|+.+.||+.|+-|++.+.++
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~-l---~~---~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSL-L---RV---KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHh-c---Ch---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 3445679999999988888762 2 22 344688999999999999999999999999998854
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.68 E-value=19 Score=44.48 Aligned_cols=176 Identities=18% Similarity=0.232 Sum_probs=121.5
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l 368 (1974)
.....+.+.+|-.|..+...+..+. --+.+..|.+.+.|.+..|...|+.+++.+- . ...+
T Consensus 47 ~~~~~l~~~~~~vr~~aa~~l~~~~---------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------~---~~a~ 107 (335)
T COG1413 47 ELLKLLEDEDLLVRLSAAVALGELG---------SEEAVPLLRELLSDEDPRVRDAAADALGELG-------D---PEAV 107 (335)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhhc---------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------C---hhHH
Confidence 4566678889999999988743332 2467889999999999999999988555443 2 3456
Q ss_pred HHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchh------------HHHHHHHHHHHHhhCC
Q 000166 369 PVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLV------------RSLTLNWVTFCIETSS 435 (1974)
Q Consensus 369 ~~lLeklK-EKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~v------------k~etl~~L~r~l~~~~ 435 (1974)
+++++.+. |-...||..+..+|-.+... ..++.+...+++.+..+ |.....=|. ...
T Consensus 108 ~~li~~l~~d~~~~vR~~aa~aL~~~~~~------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~----~~~ 177 (335)
T COG1413 108 PPLVELLENDENEGVRAAAARALGKLGDE------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG----ELG 177 (335)
T ss_pred HHHHHHHHcCCcHhHHHHHHHHHHhcCch------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH----HcC
Confidence 77777777 79999999888888766543 34677788888877333 211111111 111
Q ss_pred hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh--ChhHHHHHhhcCCHHHHHHHHHHH
Q 000166 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV--GMRPLERSIEKLDDVRRNKLSEMI 500 (1974)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~--Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1974)
.....+.+...++|....||.+|..+|+.+-... ....+...+.+-+...+.+.-..+
T Consensus 178 -------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 178 -------DPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred -------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 1335678889999999999999999999887763 334566666666655555554444
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.33 E-value=46 Score=45.03 Aligned_cols=135 Identities=20% Similarity=0.252 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh------
Q 000166 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA------ 396 (1974)
Q Consensus 323 y~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~------ 396 (1974)
..++...|+..-.|-.+..|..|++|||.+|-...+. ..|+..+|+-+.=|..-|++.+.-.+.-++.+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 4557777888888999999999999999999887765 45777777777766666655555444444433
Q ss_pred -----cCCC--------------------------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhh
Q 000166 397 -----GCLN--------------------------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1974)
Q Consensus 397 -----~~~~--------------------------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~ 445 (1974)
.|.+ ...+++++.+.++...++|+.+++.=..|+|-..+..+- +.
T Consensus 423 ~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq----~~ 498 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQ----EL 498 (734)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHH----HH
Confidence 1111 224567777888888899999998888888866554222 23
Q ss_pred hHHHHHhhhCCCC-HHHHHHHH
Q 000166 446 YVPICMECLNDGT-PEVRDAAF 466 (1974)
Q Consensus 446 ~~~~l~k~l~Ds~-~~VR~aA~ 466 (1974)
+...|--+.+|++ +++||.+.
T Consensus 499 l~~vL~~~~~d~~~~dlrDr~l 520 (734)
T KOG1061|consen 499 LQGVLPLATADTDNPDLRDRGL 520 (734)
T ss_pred HHHHHhhhhccccChhhhhhHH
Confidence 3445556666664 59999987
|
|
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=85.15 E-value=4.5 Score=44.10 Aligned_cols=75 Identities=27% Similarity=0.336 Sum_probs=64.2
Q ss_pred ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhccCCHH----HHHHHHHHHHHHHH
Q 000166 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKPT----VAESLTQTLQAMHK 395 (1974)
Q Consensus 322 dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~lLeklKEKK~~----V~eA~~~aLda~~~ 395 (1974)
.=.+.+++|+++|...|.+++..|+..++.+.+--|..|... .+-++..|..-++.++.. |++-+.+.+..|..
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999999999999766 455777777767776665 79999999999987
Q ss_pred h
Q 000166 396 A 396 (1974)
Q Consensus 396 ~ 396 (1974)
.
T Consensus 119 ~ 119 (140)
T PF00790_consen 119 A 119 (140)
T ss_dssp H
T ss_pred H
Confidence 5
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=84.81 E-value=4.3 Score=43.93 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=70.2
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+ +-.+..=.+.+++|+++|...|.+++..|+..++.+.+-=|..|... .+.++..|
T Consensus 13 l~~~dw~~~l~icD~i-------~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L 85 (133)
T smart00288 13 LLEEDWELILEICDLI-------NSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNEL 85 (133)
T ss_pred CCCcCHHHHHHHHHHH-------hCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHH
Confidence 4456675444433332 11233346899999999999999999999999999999999999766 34566666
Q ss_pred HHHhccCCH--HHHHHHHHHHHHHHHh
Q 000166 372 LEKLKEKKP--TVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKEKK~--~V~eA~~~aLda~~~~ 396 (1974)
...++.+.. .|++.+.+.+..|...
T Consensus 86 ~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 86 VKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 655555443 2899999999999875
|
Unpublished observations. Domain of unknown function. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.55 E-value=2e+02 Score=40.67 Aligned_cols=206 Identities=15% Similarity=0.094 Sum_probs=118.3
Q ss_pred CCcccccCCCCchhhhhhh--ccCChHHH----HHHHHHHHHhhhcCCCCC--CChhHHHHHHHHHhc-chh-HHHHHHH
Q 000166 276 VDPVDILTPLEKSGFWEGV--KATKWSER----KDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVN-IAVAVEA 345 (1974)
Q Consensus 276 ~~pvdIl~klpk~~f~~~l--~s~KWkeR----kEALe~L~~L~~~pKi~~--~dy~dL~~~Lkk~l~-DsN-v~vv~~A 345 (1974)
+.+-|+.+++ ..|.+.+ ..+-|..| .--|..+..+.++-+-.. +--+...+.|-...- |.| ..+--+-
T Consensus 203 ~sR~D~~~~~--~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKll 280 (1133)
T KOG1943|consen 203 FSRTDVKDLL--LSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLL 280 (1133)
T ss_pred cccccHHHHH--HHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHH
Confidence 3444555555 3577775 23678888 344555555554333221 112345566666554 444 5566677
Q ss_pred HHHHHHHHHHhccc----------------------c------------------ccchhhhHHHHHHHhccCCHHHHHH
Q 000166 346 IQAIGNLARGLRTH----------------------F------------------SGSSRFLLPVLLEKLKEKKPTVAES 385 (1974)
Q Consensus 346 ~~~i~~LA~gLr~~----------------------F------------------~~y~~~~l~~lLeklKEKK~~V~eA 385 (1974)
.+|++.|.--.=++ | .-++..++--+|+-++|+-..||=+
T Consensus 281 vKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWS 360 (1133)
T KOG1943|consen 281 VKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWS 360 (1133)
T ss_pred HHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHH
Confidence 77777553221111 1 1234578888999999999999999
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHH-HHhhcCCch----hHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhC--C--
Q 000166 386 LTQTLQAMHKAGCLNLVDVVEDVK-TSVKNKVPL----VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN--D-- 456 (1974)
Q Consensus 386 ~~~aLda~~~~~~~~l~~~~e~i~-~al~~KnP~----vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~--D-- 456 (1974)
+.+.+--+... .+ .++.+++. ..+.+=||. .=-.++.+|+..-... -.+...+..++|.+++.+. +
T Consensus 361 aAKg~grvt~r--lp-~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG--lLlps~l~dVvplI~kaL~Yd~~~ 435 (1133)
T KOG1943|consen 361 AAKGLGRVTSR--LP-PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG--LLLPSLLEDVVPLILKALHYDVRR 435 (1133)
T ss_pred HHHHHHHHHcc--Cc-HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhhhhhhh
Confidence 99988888765 34 33333333 222233433 2224444444332110 1112345788999998873 2
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000166 457 ----GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1974)
Q Consensus 457 ----s~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1974)
.-.-|||||+-++=++.+.-....|.+++..|
T Consensus 436 G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L 471 (1133)
T KOG1943|consen 436 GQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSL 471 (1133)
T ss_pred cccccccchHHHHHHHHHHHHhcCChhhhhHHHHHH
Confidence 23569999999888888776666566665544
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=83.42 E-value=5.9 Score=43.44 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=71.9
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+.. .+..=.+.+++|+++|...|.+++..|+..++.+.+--|..|... .+-++..|
T Consensus 17 l~~~dw~~ileicD~In~-------~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l 89 (142)
T cd03569 17 LGEPDLASILEICDMIRS-------KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDEL 89 (142)
T ss_pred cCccCHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence 355677665555554421 123346899999999999999999999999999999999998765 45566666
Q ss_pred HHHhc-cCCHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLK-EKKPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklK-EKK~~V~eA~~~aLda~~~~ 396 (1974)
..-+. ...+.|++-+...+..|...
T Consensus 90 ~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 90 KDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 66555 34556888899999999875
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=83.29 E-value=7.8 Score=41.90 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=72.3
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc-hh-hhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR-FLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y-~~-~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+..- +..=.+.+++|+++|...|.+++..|+.+++.+.+--|+.|... +. -++..|
T Consensus 13 ~~~~D~~~il~icd~I~~~-------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l 85 (133)
T cd03561 13 LEEPDWALNLELCDLINLK-------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL 85 (133)
T ss_pred cCCccHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence 3456676544444443211 44457899999999999999999999999999999999999766 32 566666
Q ss_pred HHHhccC---CHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKEK---KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKEK---K~~V~eA~~~aLda~~~~ 396 (1974)
..-+..+ .+.|++-+.+.+..|..+
T Consensus 86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 86 VKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6666653 567888899999999875
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.12 E-value=31 Score=42.30 Aligned_cols=165 Identities=19% Similarity=0.288 Sum_probs=96.1
Q ss_pred HHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCCh----hhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHH
Q 000166 1162 ELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR----KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPE 1237 (1974)
Q Consensus 1162 ~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~----~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~ 1237 (1974)
.+++||..-+ +.+..+|||.|...++.|.--+.+.+.-.. ..+|. +-++-|+
T Consensus 64 ~meqq~~~el-p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VId-aGvVpRf---------------------- 119 (526)
T COG5064 64 PMEQQFYSEL-PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVID-AGVVPRF---------------------- 119 (526)
T ss_pred chhHHhhhhh-HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHh-ccccHHH----------------------
Confidence 4666776655 889999999999999999988888775322 11222 1122222
Q ss_pred HHHHHHhcCCcccHhHHhh--------------------hhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchHH-HH
Q 000166 1238 LFDTLRDEGYSLTESEAAV--------------------FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLP-YI 1296 (1974)
Q Consensus 1238 l~~~l~~~~y~lsd~EA~~--------------------flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf~-~l 1296 (1974)
++.|.+.+-.|-+.||+- -+|.+|.-+-++.+.||+.. .=++..|-..|-.+. |+
T Consensus 120 -vefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQa---vWALGNiAGDS~~~RD~v 195 (526)
T COG5064 120 -VEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQA---VWALGNIAGDSEGCRDYV 195 (526)
T ss_pred -HHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHH---HHHhccccCCchhHHHHH
Confidence 333445555555666654 47899999989888888742 334444544444443 44
Q ss_pred Hh--------hhccCChh--hHhHHHHHH-HHHHHhhcCccc----cccchHHHHHHHhccCChhHHHHHHHHHH
Q 000166 1297 LE--------GLRSKNNR--TRIECVDLV-GFLIDHHGAEIS----GQLKSLQIVASLTAERDGEIRKAALNTLA 1356 (1974)
Q Consensus 1297 ~~--------glksKN~r--~R~EcL~el-~~li~~~G~~v~----~~~Kal~~iA~~i~drD~~VR~AALn~l~ 1356 (1974)
++ |+=.-|++ .-.--+.|. +.|- .|-+.. .-.++|+.++++|-.+|+.|---|.=++.
T Consensus 196 L~~galeplL~ll~ss~~~ismlRn~TWtLSNlc--RGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiS 268 (526)
T COG5064 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC--RGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAIS 268 (526)
T ss_pred HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh--CCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 43 22111111 000111221 1111 133221 11478999999999999999777766655
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.02 E-value=1.1e+02 Score=40.20 Aligned_cols=362 Identities=17% Similarity=0.160 Sum_probs=206.7
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHH-HcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000166 855 TPTLVKSLESPDWKVRLESIEAVNKILE-EANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEK 932 (1974)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~-~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1974)
....+..+.+.+=..+.++..+.-+++. +-|+.|..-.-.-+++-|-..| .+.|-.+.--|+-+++.||.+---.-.-
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 3456677777787889999999999996 3345554433223444455555 5778888999999999998875433333
Q ss_pred hhh-hhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-cc-hhhhH-----HHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000166 933 SSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HL-DKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1974)
Q Consensus 933 ~~k-~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-gl-~~~~~-----~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~ 1004 (1974)
++. ..+|-++..|......||+-|.-||--++... .+ +-++. .+...+.....-..+| -+.|....|-..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lR--n~tW~LsNlcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLR--NATWTLSNLCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHH--HHHHHHHHHHcC
Confidence 332 46788999999999999999998887665432 22 22222 2222222221001233 366777777666
Q ss_pred CC-Ccc---hhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCC
Q 000166 1005 SG-FPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (1974)
Q Consensus 1005 ~~-~~~---~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~~~~~~~ 1080 (1974)
+. .|. ...++..+..+|.+.+++|..-|.-+|.++.-+--+ ...-- ++-.....+++.|....++...|+-
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne-~iq~v---i~~gvv~~LV~lL~~~~~~v~~PaL- 300 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE-KIQMV---IDAGVVPRLVDLLGHSSPKVVTPAL- 300 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH-HHHHH---HHccchHHHHHHHcCCCcccccHHH-
Confidence 53 332 344555577789999999999888888776533211 11111 1123445566666554321110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhc---------ccCC-CChHHHHhhhhccc
Q 000166 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL---------NVKD-SNKEDRERMVVRRF 1150 (1974)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~K~~R~~~~~~kw 1150 (1974)
..-++ +++ | .+.+++.++ .... +.|+ -+|+- --|
T Consensus 301 ---------------RaiGN-------Ivt-G-----------~d~QTq~vi~~~~L~~l~~ll~~s~~~-~ikkE-AcW 344 (514)
T KOG0166|consen 301 ---------------RAIGN-------IVT-G-----------SDEQTQVVINSGALPVLSNLLSSSPKE-SIKKE-ACW 344 (514)
T ss_pred ---------------hhccc-------eee-c-----------cHHHHHHHHhcChHHHHHHHhccCcch-hHHHH-HHH
Confidence 00000 000 0 011222111 0111 1111 01111 125
Q ss_pred cc---cCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHh--HHHHHHHHHHhccccch
Q 000166 1151 KF---EDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV--LDILLRWFVLQFCKSNT 1225 (1974)
Q Consensus 1151 ~f---~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~i~~--lDlllkw~tlr~~dtN~ 1225 (1974)
.. +.-..+|++.. |...+=+.|+..|-+.||+-+-+|.=.+.-+..+-..+.|.- -+-+++-++-.+.-.++
T Consensus 345 ~iSNItAG~~~qiqaV---ida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~ 421 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAV---IDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDV 421 (514)
T ss_pred HHHHhhcCCHHHHHHH---HHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCCh
Confidence 43 33455666666 888999999999999999988888877776655444433320 11144555445555788
Q ss_pred HHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcC
Q 000166 1226 TCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267 (1974)
Q Consensus 1226 ~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd 1267 (1974)
.++..+||-+..+|.+--... .+.. .-+..+|+..|-
T Consensus 422 ~ii~v~Ld~l~nil~~~e~~~-~~~~----n~~~~~IEe~gg 458 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEAEK-NRGT----NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cccc----cHHHHHHHHccC
Confidence 889999999998776643332 1111 455677777764
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=82.36 E-value=29 Score=42.95 Aligned_cols=148 Identities=12% Similarity=0.138 Sum_probs=104.7
Q ss_pred cCChHHHHHHHHHHHHhhh--cCCCCC-CChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccc-cccchhhhHHH
Q 000166 296 ATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPV 370 (1974)
Q Consensus 296 s~KWkeRkEALe~L~~L~~--~pKi~~-~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~-F~~y~~~~l~~ 370 (1974)
.+.|-|=-..|..|.+.++ ++.+.- .+=..+.+.|..+++ ---.-|=..|+++.+.|=+.+|+. +.+....
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i---- 97 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPI---- 97 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHH----
Confidence 5678888888888887666 343332 233456677777776 555556666677666666666643 2222222
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHH
Q 000166 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1974)
Q Consensus 371 lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l 450 (1974)
....+...+.+-.-+||-..+..+.+.+-..++ .+.+.++.++..+
T Consensus 98 ---------------------------------~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~sl 143 (307)
T PF04118_consen 98 ---------------------------------YSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSL 143 (307)
T ss_pred ---------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHh
Confidence 334456666677778888888888887765555 5556778899999
Q ss_pred HhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000166 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
+.+++|.+.|+-+.....|..+...+|.+.+
T Consensus 144 LpGLede~sE~~~~~~~ll~~l~~~v~~~~F 174 (307)
T PF04118_consen 144 LPGLEDEGSEFFDRTLKLLDKLKEAVGDKYF 174 (307)
T ss_pred ccccccCCchHHHHHHHHHHHHHHhcChhHH
Confidence 9999999999999999999999999998833
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.33 E-value=32 Score=43.02 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=99.4
Q ss_pred ChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHH----h
Q 000166 322 DFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK----A 396 (1974)
Q Consensus 322 dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~----~ 396 (1974)
.-..++..|..++. ++|=.....++.++..=...++..+ -..++..+..-|+|||++||.+-..++-.++. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~---~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL---PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC---CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 45678899999998 9999999999988888887774333 36678888889999999999887777766653 1
Q ss_pred cCC-ChhhhHHHHHH----HhhcCCch---------------------------------------------------hH
Q 000166 397 GCL-NLVDVVEDVKT----SVKNKVPL---------------------------------------------------VR 420 (1974)
Q Consensus 397 ~~~-~l~~~~e~i~~----al~~KnP~---------------------------------------------------vk 420 (1974)
... -..++++.+.+ +..+..|. .-
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~ 175 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS 175 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC
Confidence 011 12233333333 33333332 12
Q ss_pred HHHHHHHHHHHhhCChh----HHhHhhhhhHHHHHhhhCCC--CHHHHHHHHHHHHHHHHHhChh
Q 000166 421 SLTLNWVTFCIETSSKA----AVLKVHKDYVPICMECLNDG--TPEVRDAAFSVLAAIAKSVGMR 479 (1974)
Q Consensus 421 ~etl~~L~r~l~~~~~~----~~~~~~k~~~~~l~k~l~Ds--~~~VR~aA~~~l~~lmk~~Ge~ 479 (1974)
.+.+.|+.|+++..-.. ........+.-.++-++-.+ ..+||..|..++..++..-++.
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 23344444444321100 00000234566677778788 8999999999999998877654
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.94 E-value=2.1e+02 Score=40.06 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=55.8
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHHhccc---cccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 000166 331 KKLITDVNIAVAVEAIQAIGNLARGLRTH---FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 331 kk~l~DsNv~vv~~A~~~i~~LA~gLr~~---F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~ 396 (1974)
.+.|++.|..+...|+.|+..--.=|... |-|-+....|++++++++|.+.+++-+.+|+..+..+
T Consensus 809 ~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 809 IHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 34567888888888888887766666532 7788999999999999999999999999999999987
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.03 E-value=1.5e+02 Score=41.37 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=64.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh-cCCChhhhHH
Q 000166 335 TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVE 406 (1974)
Q Consensus 335 ~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~-~~~~l~~~~e 406 (1974)
.-||+--+-..+..|+.+|..+|..|.++...++=++++++...-+.|...+..|+-+++.. ++-+++.++.
T Consensus 558 ~kSnv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~ 630 (1014)
T KOG4524|consen 558 KKSNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIR 630 (1014)
T ss_pred hccchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 37888888899999999999999999999999999999999999999999999999999987 2344666654
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=80.87 E-value=16 Score=44.76 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcChhhhhh--hhHHHHHHHhhhhcC-ChhhHHHHHHHHHHHHhhch--hhhHHHHHHHHhhccCchhHH
Q 000166 72 ALDALIAYLKAADADAGRY--AKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAVV 146 (1974)
Q Consensus 72 ~leal~~~l~~a~~~~~~~--~~~v~~~lveK~L~~-r~ktk~~a~e~~l~~vE~e~--~~~v~e~ll~~~~~K~PKvva 146 (1974)
.|..+...+++...+.... -.+++..+|-.++.+ .+..++.|.+|+=+|+=++. ....+..+...+..-.+-+..
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3444555666654222222 237788888888874 78999999999999887754 355666777777666899999
Q ss_pred HHHHHHHHHHHhhCCCccCh----------hHHHhhchhhhcCCChhHHHHHHHHHHHHH
Q 000166 147 PAIDVMFQALSEFGAKIIPP----------KRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1974)
Q Consensus 147 aai~~l~~~l~~FG~kvv~~----------K~ilk~l~~lf~h~dk~VR~ea~~L~vely 196 (1974)
.|+.+|..++..||...++. ..+++.+-+.+.+.|+.||..+..-+.-|.
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999976642 358999999999999999988766655543
|
|
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=80.17 E-value=6.8 Score=42.95 Aligned_cols=96 Identities=15% Similarity=0.229 Sum_probs=72.4
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~ 370 (1974)
+.+.+|.-=.|.-|.+. . ....=.+.+++|+++|. ..|.+|+..|+..++.+.+-=|..|... .+.++..
T Consensus 14 l~~~dw~~ileicD~In----~---~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e 86 (141)
T cd03565 14 LQSEDWGLNMEICDIIN----E---TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKD 86 (141)
T ss_pred CCCcCHHHHHHHHHHHh----C---CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhH
Confidence 55667876555555442 1 12224589999999998 6799999999999999999999999876 4577776
Q ss_pred -HHHHhccCC---HHHHHHHHHHHHHHHHh
Q 000166 371 -LLEKLKEKK---PTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 371 -lLeklKEKK---~~V~eA~~~aLda~~~~ 396 (1974)
|+..+..+. ..|++-+.+.+..|...
T Consensus 87 ~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 87 VLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 666666543 37888899999999864
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.01 E-value=71 Score=42.61 Aligned_cols=301 Identities=17% Similarity=0.177 Sum_probs=186.0
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC--hh---
Q 000166 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KA--- 437 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~--~~--- 437 (1974)
...+...+..-+.+.-..||.++.++|-++.+ ...|.. +.....+.|.+-+-.||.++...+.-+=..++ ..
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 44445558889999999999999999999987 255654 45777889999999999999776654433331 11
Q ss_pred HHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc--CCHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000166 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK--LDDVRRNKLSEMIAGSGGDVATGTSSAR 515 (1974)
Q Consensus 438 ~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~--Ld~~kk~KI~e~~~~~~~~~~~~~~~~~ 515 (1974)
.-.++.......++..++|..-.||=-|+++||.+- .+.++.+.+.|++ +...+|++-
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~-~vSee~i~QTLdKKlms~lRRkr~------------------- 333 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE-QVSEEIIQQTLDKKLMSRLRRKRT------------------- 333 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH-HhHHHHHHHHHHHHHhhhhhhhhh-------------------
Confidence 112444556677889999999999999999999754 4555666655542 122222210
Q ss_pred ccCCCCCCCCCCCcchhhhhhhhhh---cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHH
Q 000166 516 VQTSGGSVPSVEASESSFVRKSAAS---MLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLE 592 (1974)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~E 592 (1974)
+.+.+ +...+ -.+|++-.+ | .+.|
T Consensus 334 ---------ahkrp------k~l~s~GewSsGk~~~a---------------------------------d-----vpse 360 (823)
T KOG2259|consen 334 ---------AHKRP------KALYSSGEWSSGKEWNA---------------------------------D-----VPSE 360 (823)
T ss_pred ---------cccch------HHHHhcCCcccCccccc---------------------------------c-----Cchh
Confidence 00000 00000 000110000 0 0122
Q ss_pred HHHHHHhccCc----HhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHH
Q 000166 593 EIESRLGSLIP----ADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667 (1974)
Q Consensus 593 e~e~~~~~l~~----~~i~~~L~s~~WK~RL~a~E~l~~~v~~-~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil 667 (1974)
|..+....+|+ +.++-+|.+--.-.|-+|++.+.....+ .+--....+.|+.+ |+|---.|-.+.+..+
T Consensus 361 e~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDM------fNDE~~~VRL~ai~aL 434 (823)
T KOG2259|consen 361 EDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDM------FNDEIEVVRLKAIFAL 434 (823)
T ss_pred hccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH------hccHHHHHHHHHHHHH
Confidence 33333334555 3456777777788899999999866544 22222234445444 5777888999999999
Q ss_pred HHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHH--HHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 000166 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTT--FSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSA 745 (1974)
Q Consensus 668 ~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~--~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~a 745 (1974)
+.++.+ -.+-+.....++..+.|.. ++.|+...++|-. +........++.++++.+ -|=|+=+-|.+.+|..+
T Consensus 435 ~~Is~~-l~i~eeql~~il~~L~D~s--~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L--~kyPqDrd~i~~cm~~i 509 (823)
T KOG2259|consen 435 TMISVH-LAIREEQLRQILESLEDRS--VDVREALRELLKNARVSDLECIDMCVAHLLKNL--GKYPQDRDEILRCMGRI 509 (823)
T ss_pred HHHHHH-heecHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh--hhCCCCcHHHHHHHHHH
Confidence 998876 4555555555666655554 3456677776644 455566667777777765 46677777777666554
Q ss_pred HHHhc
Q 000166 746 VEDFG 750 (1974)
Q Consensus 746 i~eFG 750 (1974)
=..+|
T Consensus 510 GqnH~ 514 (823)
T KOG2259|consen 510 GQNHR 514 (823)
T ss_pred hccCh
Confidence 44444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1974 | ||||
| 2of3_A | 266 | Tog Domain Structure From C.Elegans Zyg9 Length = 2 | 6e-26 | ||
| 2qk2_A | 242 | Structural Basis Of Microtubule Plus End Tracking B | 2e-09 | ||
| 4ffb_C | 278 | A Tog:alphaBETA-Tubulin Complex Structure Reveals C | 6e-06 | ||
| 2qk1_A | 249 | Structural Basis Of Microtubule Plus End Tracking B | 6e-05 |
| >pdb|2OF3|A Chain A, Tog Domain Structure From C.Elegans Zyg9 Length = 266 | Back alignment and structure |
|
| >pdb|2QK2|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215 And Eb1 Length = 242 | Back alignment and structure |
|
| >pdb|4FFB|C Chain C, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 278 | Back alignment and structure |
|
| >pdb|2QK1|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 244 bits (623), Expect = 4e-73
Identities = 66/255 (25%), Positives = 134/255 (52%)
Query: 1133 NVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLE 1192
K ++ +++ + ++ F+ P E I +L+ + + L +L DFK+ + L+
Sbjct: 9 EDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALD 68
Query: 1193 MLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252
L + + + ++ D+LL+W L+F ++N L+KVLE + + +RD +++
Sbjct: 69 SLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128
Query: 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECV 1312
E + F+P L+ K+G + +R +R++ + + K P +L+ L+SKN R R EC+
Sbjct: 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECL 188
Query: 1313 DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372
++ + I + G L + VA ++D +R AA+N L +K G+ +W+ G+
Sbjct: 189 LVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248
Query: 1373 LTDAQKSMLDDRFKW 1387
+ D KS++++R K
Sbjct: 249 MADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 92.9 bits (230), Expect = 1e-20
Identities = 50/261 (19%), Positives = 104/261 (39%), Gaps = 12/261 (4%)
Query: 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621
KK +++ KL + P++ + ++++ LG+ + QL +K+ L A
Sbjct: 8 NEDKKQRIKEEKQLKLVKWNFQ-APTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAA 66
Query: 622 ISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN----YLAATATK 676
+ SL + + L + ++L++ + + E N +V+E+ + T T
Sbjct: 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLR--FFETNPAALIKVLELCKVIVELIRDTETP 124
Query: 677 FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKV 734
++ V + + + + K R + S+ VGP + L +K KN +
Sbjct: 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK-SKNARQ 183
Query: 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
SE +L + + + G+S LK + + RNA I +L A KF G +
Sbjct: 184 RSECLLVIEYYITNAGISPLKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQM 242
Query: 795 KGFLADVKPALLSALDAEYEK 815
+ S ++ ++
Sbjct: 243 WKAAGRMADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 92.5 bits (229), Expect = 2e-20
Identities = 34/225 (15%), Positives = 76/225 (33%), Gaps = 6/225 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
+S+ + LL K+ +L HK++K A L L D+ + L
Sbjct: 36 ISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLR 95
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGR----YAKEVCDAIAAKCLTGRPKTVEKAQAV 116
++N K L+ ++ + K + + +
Sbjct: 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDI 155
Query: 117 FMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPEL 176
+ ++ ++ A+K+K A+ + V+ ++ G + + K +
Sbjct: 156 VNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPF 215
Query: 177 FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
+D NVR ++ + + ++ G K +M D K +E
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEGDQMWK--AAGRMADKDKSLVE 258
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 2e-16
Identities = 40/228 (17%), Positives = 89/228 (39%), Gaps = 11/228 (4%)
Query: 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD 906
+ + + +L+ L D+K L +++++ ++ + + + + L R ++
Sbjct: 40 QTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFE 98
Query: 907 SNKNLVMATLITLGAVASAM----GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962
+N ++ L + + P ++ + +L G+ K +MR +++
Sbjct: 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNV 158
Query: 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSK--QLTGLSGFPDAAHLLKPASIA 1020
V KM P + AL A R + + G+S + + K +
Sbjct: 159 LSDVVGPLKMTPMLLDALKSKN--ARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPF 215
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1068
+ DK +VR AA +V + G + + K + +L+ ERIK
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEG-DQMWKAAGRMADKDKSLVEERIK 262
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 80.6 bits (198), Expect = 2e-16
Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 10/228 (4%)
Query: 282 LTPLEKSGFWEGVKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIA 340
L K + + + A+ L + ++ R + + + + N A
Sbjct: 43 LGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPA 102
Query: 341 VAVEAIQAIGNLARGLRTH----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396
++ ++ + +R +P LL K E K + S+ + +
Sbjct: 103 ALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV 162
Query: 397 GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND 456
+ + ++K+K RS L + + I + + + + D
Sbjct: 163 VGPLKM--TPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK--SLSVEKTVAPFVGD 218
Query: 457 GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504
VR+AA +VL A K G + + ++ ++ D ++ + E I +G
Sbjct: 219 KDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERIKRTG 265
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 207 bits (527), Expect = 4e-60
Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 21/272 (7%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALC-----DSITDPKDNRIRELGP 55
MS EE+ + LP E+RL +K WK R EA +L L D D
Sbjct: 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPT 58
Query: 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAK------EVCDAIAAKCLTG-RPK 108
LF + + DSN Q++A+ AL + + A + + + A + K LT R
Sbjct: 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT 118
Query: 109 TVEKAQAVFMLWVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPK 167
T ++ + + L+ ++ ++++ + K+ K + A + +++ ++ FG + +
Sbjct: 119 TKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQ 178
Query: 168 ----RILKMLPELFDHQDQNVRASSKGLTLELCRWIG--KDPVKTILFEKMRDTMKKELE 221
+LK +P+L H D+NVR+ + L +E+ + G D ++ ILF+K++ K+L
Sbjct: 179 TFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238
Query: 222 VELVNVSGTARPTRKIRAEQDKELGQELISED 253
V ++ + + +EL ++ E+
Sbjct: 239 KLFAKVGDEPSSSKMLFEWEKRELEKKRSQEE 270
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 98.3 bits (244), Expect = 2e-22
Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 35/270 (12%)
Query: 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSV 639
E+V+ + + LEE +L +WK RLEA L Q
Sbjct: 3 GEEEVDYTTLPLEE---------------RLTYKLWKARLEAYKELNQLFRNSVGDISRD 47
Query: 640 EILVRLVCMLPGW----SEKNVQVQQQVIEVINYL------AATATKFPKKCVVLCLLGI 689
+ + + ++ NV Q+Q I +N L ++ + +
Sbjct: 48 DNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLL 107
Query: 690 SERV---ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV 746
E+ + T+ +M C+ + L + K PK+++ + +
Sbjct: 108 VEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELM 167
Query: 747 EDFGVSHLKLKDLI-DFCKDTG--LQSSAAATRNATIKLLGALHKFVGPDI----KGFLA 799
FG++++ ++ + + K R+ T+ L+ ++K G + +
Sbjct: 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFK 227
Query: 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVR 829
+KP + L + K E +
Sbjct: 228 KLKPIQVKDLHKLFAKVGDEPSSSKMLFEW 257
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 2e-13
Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 25/264 (9%)
Query: 1175 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-----SNTTCLL 1229
L RL +K +++ + L + + DI +I + W SN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 1230 KVLEFLPELFDTLRDEGYSLTE--SEAAVFLPCLVEKS-GHNIEKVREKMRELTKQIVNF 1286
+ + L L D + + + P LVEK + + + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 1287 -YSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV----ASLTA 1341
S T+++ ++ K + + V L+ G L + L
Sbjct: 134 DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG 193
Query: 1342 ERDGEIRKAALNTLATGYKILGEDIWR----YVGKLTDAQKSMLDDRFKWKVREMEKKKE 1397
D +R +N + YK+ G + KL Q L F K
Sbjct: 194 HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLF--------AKVG 245
Query: 1398 GKPGEARAALRRSVRENGSDIAEQ 1421
+P ++ RE +++
Sbjct: 246 DEPSSSKMLFEWEKRELEKKRSQE 269
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 6e-13
Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 16/216 (7%)
Query: 298 KWSERKDAVAELTKLASTKRIAPGD------FTEVCRTLKKLITDVNIAVAVEAIQAI-- 349
W R +A EL +L + + ITD N+ +AI A+
Sbjct: 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNS 81
Query: 350 ----GNLARGLRTHFSGSSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404
+ H P+L+EK L + T + ++ ++
Sbjct: 82 LIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL-DTSITQS 140
Query: 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIET--SSKAAVLKVHKDYVPICMECLNDGTPEVR 462
VE V + K+P + + N V + + V + + + G VR
Sbjct: 141 VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVR 200
Query: 463 DAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 498
+++ I K G ++ ++ +
Sbjct: 201 SQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKD 236
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 4e-09
Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 24/266 (9%)
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF----GGLRGRLYDSNKNLVM 913
L + L WK RLE+ + +N++ + I +++ + DSN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 914 ATLITLGAVASAMGPAVEKSSKG-------VLSDILKCLGDNKKHMRECTLTVLDAWLAA 966
++ L ++ A + K++ + K L ++ + +++ + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 967 VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL-----TGLSGFPDAAHLLKPASIAM 1021
+ + KL + + + + + T ++ LLK
Sbjct: 134 DTSITQSVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA 192
Query: 1022 TDKSSDVRKAAEACIVEILRAGG------QETIEKNLKDIQGPALALILERIKLNGASQV 1075
+VR IVEI + G +E + K LK IQ L + ++ + S
Sbjct: 193 GHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVG-DEPSSS 251
Query: 1076 SMGPTSKSSSKVPKSASNGVSKHGNR 1101
M + K + + H +
Sbjct: 252 KMLFEWEKRELEKKRSQEEEAHHHHH 277
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 199 bits (506), Expect = 1e-57
Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 16/245 (6%)
Query: 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL--TKLASTKRI--APGDFTEV 326
++ IL L K F E + ++KW +R +A+ E + L+ TK++ +++ +
Sbjct: 3 HMASMLPEETILDKLPKD-FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL 61
Query: 327 CRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH--FSGSSRFLLPVLLEKLKEKKPTVA 383
+I D NI A Q++ + L+T + LL++ KEKKP+V
Sbjct: 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVI 121
Query: 384 ESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-- 436
E++ + L + K A D+++D+ +K+K P +R ++
Sbjct: 122 EAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181
Query: 437 -AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495
+ + VPI ++ +ND P +R F A + K GM +++E LD+++R K
Sbjct: 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKK 241
Query: 496 LSEMI 500
+ E +
Sbjct: 242 IEETV 246
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 93.2 bits (231), Expect = 7e-21
Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 20/244 (8%)
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT--GELFGGL 900
LP E I K + + S WK R+E++E + K+++ L G
Sbjct: 6 SMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIY 65
Query: 901 RGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTL 957
+ D+N V ++ + + V + +L + K + E
Sbjct: 66 GHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIR 125
Query: 958 TVL-------DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
L D ++ + M+ + + + R + + +
Sbjct: 126 KALLTICKYYDPLASSGRNEDMLKDILEHMKHKT--PQIRMECTQLFNASMKEEKDGYST 183
Query: 1011 AHLLKPASIA------MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL 1064
+ + D +R +++ G T K L+ + I
Sbjct: 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIE 243
Query: 1065 ERIK 1068
E +K
Sbjct: 244 ETVK 247
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 1e-16
Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 31/249 (12%)
Query: 1166 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-------EVLDILLRWFVL 1218
++ +D R+ S+ +K +V+ LE ++ S K + +L I
Sbjct: 12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ- 70
Query: 1219 QFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRE 1278
+N + + + + D L+ G+S + ++ L++++ V E +R+
Sbjct: 71 --KDANIQAVALAAQSVELICDKLKTPGFS--KDYVSLVFTPLLDRTKEKKPSVIEAIRK 126
Query: 1279 LTKQIVNFYSATKT-------LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLK 1331
I +Y + L ILE ++ K + R+EC L + S +
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186
Query: 1332 SLQ-----IVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFK 1386
L+ IV + + IR + A KI G K + LD+ +
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM---NTFVKTLEH----LDNLKR 239
Query: 1387 WKVREMEKK 1395
K+ E K
Sbjct: 240 KKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 2e-15
Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 20/235 (8%)
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGW--SEKN 656
+P D ++ S+ WK+R+EA+ V + L + + L+ + + N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 657 VQVQQQVIEVINYLAAT--ATKFPKKCVVLCLLGISERVADIKT--RAHAMKCLTTFSEA 712
+Q + + + F K V L + +R + K K L T +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 713 VGPGFIFERLYKIMKD------HKNPKVLSEGILWMVSAVEDFGVSHLKL-----KDLID 761
P R ++KD HK P++ E +++++ + L +++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGP-DIKGFLADVKPALLSALDAEYEK 815
+ + A R + L K G L + ++ +
Sbjct: 195 IVIQI-VNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 6e-08
Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 21/230 (9%)
Query: 12 KKLP--WEDRLLHKNWKVRNEA----NIDLAALCDSITDPKDNRIRELGPLFKKTVADSN 65
KLP +++R+ WK R EA + + + N LG D+N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 66 APVQDKALDALIAYLKA--ADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL 123
A ++ + Y V + + +P +E + + +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 124 -------EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP-----KRILK 171
+ L + + +K+K + + + ++ E ++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 172 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
++ ++ + +R L + G + L E + + +K++E
Sbjct: 195 IVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTL-EHLDNLKRKKIE 243
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 178 bits (452), Expect = 2e-50
Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 6/233 (2%)
Query: 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRT 329
+L+DPVDIL+ + K F++ ++ KW+ RK+++ L KL ++ G++ +
Sbjct: 2 SHMDLLDPVDILSKMPKD-FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSA 60
Query: 330 LKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQ 388
LKK+IT D N+ + A + + LA+GL FS + +P LLEK KEKKP V +L +
Sbjct: 61 LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALRE 120
Query: 389 TLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE-TSSKAAVLKVHKDYV 447
+ A++ +L E + S+ NK P V+S T ++ + T A K+ K
Sbjct: 121 AIDAIYA--STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLT 178
Query: 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500
++ LN+ P VRD++ L + K +G + + + +D ++ K+ E
Sbjct: 179 TSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQ 231
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 8/231 (3%)
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902
D L DI K LE W +R ES+E + K+L + +++ G L L+
Sbjct: 5 DLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKK 63
Query: 903 RLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
+ DSN LV L +A + + + +L+ + K ++ +D
Sbjct: 64 VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP----A 1017
A A+ L+ + +L++ + + ++++ LT LLK
Sbjct: 124 AIYASTSLEAQQESIVESLSNKN--PSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1068
+ + VR ++ + +++ G + + L D+ +A I E +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 3e-20
Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 9/226 (3%)
Query: 1166 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-SN 1224
D++ +D + +L + + + LE+L+K L K L+ K SN
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1225 TTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 1284
+ + L L L + A+ +P L+EK V +RE I
Sbjct: 71 VVLVAMAGKCLALLAKGLAKR----FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIY 126
Query: 1285 NFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE--ISGQLKSL-QIVASLTA 1341
S I+E L +KN + E + + LK L +
Sbjct: 127 ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN 186
Query: 1342 ERDGEIRKAALNTLATGYKILGED-IWRYVGKLTDAQKSMLDDRFK 1386
E D +R ++ L T K++G+ + + + + + + + +
Sbjct: 187 EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 2e-16
Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 7/216 (3%)
Query: 12 KKLP--WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVA-DSNAPV 68
K+P + D+L K W +R E+ L L ++ L KK + DSN +
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73
Query: 69 QDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDV 128
A L K YA ++ K +P V + +++
Sbjct: 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA 133
Query: 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVR 185
+ + +++ NK + +AL+ + K + L + + D VR
Sbjct: 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193
Query: 186 ASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
SS L + +G V +L + +++
Sbjct: 194 DSSAEALGTLIKLMGDKAVTPLL-ADVDPLKMAKIK 228
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 1e-15
Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 12/224 (5%)
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLPGWSEKNV 657
S +P D +L+ W R E++ L + + L+ ++ L ++ + NV
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI--TKDSNV 71
Query: 658 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGP 715
+ + + LA K C+ + E+ + K + + +
Sbjct: 72 VLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 716 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSA 772
E + + + +KNP V SE L++ A+ + L LK L L
Sbjct: 132 EAQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV-KTLNEPD 189
Query: 773 AATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSALDAEYEK 815
R+++ + LG L K +G + LADV P ++ + EK
Sbjct: 190 PTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEK 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.5 bits (208), Expect = 3e-16
Identities = 118/766 (15%), Positives = 233/766 (30%), Gaps = 249/766 (32%)
Query: 748 DF--GVSHLKLKDLI-----DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLAD 800
DF G + KD++ F + D K D
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF--------------------------DCK----D 37
Query: 801 VKPALLSAL-DAEY-----EKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854
V+ S L E K+ GT+ T+ + +E++ KF
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---------------QEEMVQKF 82
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914
V+ + ++K + I+ + QP+ ++ R RLY+ N+
Sbjct: 83 ----VEEVLRINYKFLMSPIKTEQR---------QPSMMTRMYIEQRDRLYNDNQ----- 124
Query: 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK---H-MRECTLTVLDAWLAAVHLD 970
+ V ++ K L L L K + T W+A
Sbjct: 125 -VFAKYNV-----SRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKT----WVAL---- 168
Query: 971 KMVPYVTTALTDAKLGAEGRKDLFD----WLS-----------KQLTGLSGFPDAAHLLK 1015
K+ + D WL+ + L L + +
Sbjct: 169 -------DVCLSYKV-----QCKMDFKIFWLNLKNCNSPETVLEMLQKLL------YQID 210
Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL------ERIK- 1068
P + +D SS+++ + E+ R K ++ L L+L +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYEN----CL-LVLLNVQNAKAWNA 261
Query: 1069 LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQS 1128
N + ++ + T++ V S + H S + P+ + S+
Sbjct: 262 FNLSCKILL--TTRFKQ-VTDFLSAATTTH-----ISLDHHSMTLTPDEVKSL------- 306
Query: 1129 QALLNVKDSNKED--RE---------RMVVRRFKFEDP-RIEQIQELENDMMKYFREDLH 1176
LL D +D RE ++ + + + + + D + E
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSL 363
Query: 1177 RRLLSTDFKKQVDGLEMLQKALPSIRKDI-IEVLDILLRWFVLQFCKSNTTCLLKVLEFL 1235
L +++K D L + + I +L ++ W + ++ V+ L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLI--W-----FDVIKSDVMVVVNKL 411
Query: 1236 PELFDTLRDEGYSLTE---SEAAVFLP-CLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1291
YSL E E+ + +P +E E L + IV+ Y+ K
Sbjct: 412 ---------HKYSLVEKQPKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPK 457
Query: 1292 TLPYILEGLRSKNNRTRIECVDLVGFL---IDHHGAEISGQLKSLQIVASLTAERDGEIR 1348
T ++ +D + I HH LK+++ ER R
Sbjct: 458 TFD---------SDDLIPPYLD--QYFYSHIGHH-------LKNIE-----HPERMTLFR 494
Query: 1349 KAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDD--RFKWKVREMEKKKEGKPGEARAA 1406
L+ ++ L + I R+ +A S+L+ + K + + K A
Sbjct: 495 MVFLD-----FRFLEQKI-RHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNA 547
Query: 1407 LRRSVRENGSDIAE-QSGDVSQSVSGPTLMRRN---YGHSELHVER 1448
+ + + ++ + D+ + LM + + + V+R
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRI----ALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 2e-15
Identities = 100/756 (13%), Positives = 204/756 (26%), Gaps = 249/756 (32%)
Query: 1154 DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR-KDIIEVLDIL 1212
D + Q D++ F + D K D +M + L II D +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF---DCK---DVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 1213 LRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272
LF TL + E F+ ++ N + +
Sbjct: 62 SGTLR--------------------LFWTLLSKQ----EEMVQKFVEEVLRI---NYKFL 94
Query: 1273 REKMRELTKQ---IVNFYSATKTLPYILEGLRSKNNRTRIECVD-----LVGFLIDH--- 1321
++ +Q + Y + Y + +K N +R++ L+ L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNV 153
Query: 1322 --HGAEISGQLKSLQIVASLTAE--RDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQ 1377
G SG K+ + + +++ +KI W + +
Sbjct: 154 LIDGVLGSG--KT-----WVALDVCLSYKVQCKM------DFKIF----WLNLKNCNSPE 196
Query: 1378 KSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRR 1437
+ EM +K L + N + ++ S ++ + R
Sbjct: 197 TVL----------EMLQK-----------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 1438 NYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDP 1497
S+ + L L
Sbjct: 236 RLLKSKPY------ENCL------------L----------------------------- 248
Query: 1498 EGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQ 1557
V+ V++A K F+ SCK L+ T + K++ +
Sbjct: 249 ---VLLN-VQNA---------KAWNAFNL--------SCK----ILLTT-RFKQVTDFLS 282
Query: 1558 ESTLDSLITELLLWLLDERVPHMDDGSQLL-KALNVLMLKILDNADRTSSFVV-LI-NLL 1614
+T + + L D+ LL K L+ + T+ + +I +
Sbjct: 283 AATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 1615 RPLDPSRWPSPASNESFAARNQ-RFSDLVVKCLIKLTKVLQSTIY--------DVD---- 1661
R + W +++ N + + ++ L L ++
Sbjct: 338 RD-GLATW------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 1662 -LDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHEL-----VKLRGAAIKGHLS 1715
L I + + + ++ + + + +P + + + VKL H S
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYAL-HRS 448
Query: 1716 MV----------PIDMKPQPI---ILAYIDLNLETLAAARMLTSTGPGGQT--------- 1753
+V D+ P + ++I L + +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHI---------GHHLKNIEHPERMTLFRMVFLD 499
Query: 1754 -HW-------GDSAANNPTSATNSADAQLKQELAAIFKKIG--DKQTCTIGLYELYRI-T 1802
+ +A N S N+ QLK I ++ I + L +I
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDF-LPKIEE 557
Query: 1803 QLY--PKVDI--FAQLQNASEAFRTYIRDGLAQMEK 1834
L D+ A L EA + Q+++
Sbjct: 558 NLICSKYTDLLRIA-LMAEDEA---IFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 2e-12
Identities = 100/735 (13%), Positives = 204/735 (27%), Gaps = 241/735 (32%)
Query: 242 DKELGQ-ELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
D E G+ + +D+ +D ++ D D+ +
Sbjct: 8 DFETGEHQYQYKDILS-------VFEDAFVDNFDCKDVQDMPKSILSK-----------E 49
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVC----RTLKKLITDV---NIAVAVEAIQAIGNLA 353
E + ++ T R+ F + ++K + +V N + I+
Sbjct: 50 EIDHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 354 RGLRTHFSGSSRFLL---PVLLEKL----KEKKPTVAESLTQ-------TLQAMHKAG-- 397
+ + R L + K + + ++L + + + +G
Sbjct: 106 SMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 398 CLNLVDVVED--VKTSVKNKVPLVRSLTLNWVTF--CIETSSKAAVL-----KVHKDYVP 448
+ +DV V+ + K+ W+ C + +L ++ ++
Sbjct: 165 WV-ALDVCLSYKVQCKMDFKI--------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD-- 506
+D + ++ S+ A + + + +P E + L +V+ K +
Sbjct: 216 -----RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLS 265
Query: 507 ----VATGTSS--ARVQTSGGSVPSVEASESSFVRKSAASMLS---GKRPVSAAPASKKG 557
+ T + + + S++ + S+L RP
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 558 GPVKPS----AKKDGSG------KQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607
P + S + +DG KLT E SL +E PA+
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------IESSLNVLE-------PAEY- 371
Query: 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
++ + + +V S I L+ ++ W + V+
Sbjct: 372 --------RKMFDRL--------SV--FPPSAHIPTILLSLI--WFDVIKSDVMVVVN-- 409
Query: 668 NYLAATATKFPKKCVVLC--------LLGISERV---ADIKTRAHAMKCLTTFSEAVGPG 716
K K +V + I + + + H
Sbjct: 410 --------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS------------- 448
Query: 717 FIFERLYKIMK----DHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-----------LID 761
I + Y I K D P L + HLK + +D
Sbjct: 449 -IVDH-YNIPKTFDSDDLIPPYLDQYFYS-------HIGHHLKNIEHPERMTLFRMVFLD 499
Query: 762 F-------CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE 814
F D+ +A + + L L + K ++ D P L
Sbjct: 500 FRFLEQKIRHDS----TAWNASGSILNTLQQLKFY-----KPYICDNDPK-YERLVNAIL 549
Query: 815 KNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESI 874
F +P + E+ I K+T L +L + D
Sbjct: 550 D--F----LP----KIEENL---------------ICSKYTDLLRIALMAED-------- 576
Query: 875 EAVNKILEEANKRIQ 889
I EEA+K++Q
Sbjct: 577 ---EAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 2e-10
Identities = 74/526 (14%), Positives = 146/526 (27%), Gaps = 188/526 (35%)
Query: 1496 DPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYA 1555
D E KD ++S + FD CK V + + + +
Sbjct: 8 DFETGEHQYQYKD---ILSVFEDAFVDNFD----------CKDVQDMPKSILSKEEIDHI 54
Query: 1556 VQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS-SFVVLINLL 1614
+ S T L W L + ++++ K ++ R + F L++ +
Sbjct: 55 IMSKDAVSG-TLRLFWTL------LSKQEEMVQ-------KFVEEVLRINYKF--LMSPI 98
Query: 1615 RPLDPSRWPSPASNESFAAR------NQRFSDLVV---KCLIKLTKVLQSTIYDVDLDRI 1665
+ R PS + R NQ F+ V + +KL + L R
Sbjct: 99 K--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-------LRP 149
Query: 1666 LQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIK------------GH 1713
+++ + G+ G+ KT + V ++ +
Sbjct: 150 AKNVLID----GV------LGSG-------KTWVALDV-CLSYKVQCKMDFKIFWLNLKN 191
Query: 1714 LSMVPIDMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQ 1773
+ ++ +L ID N + + D ++N +S
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRS-----------------DHSSNIKLR-IHS---- 229
Query: 1774 LKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKV-DIFAQLQNAS--EAF----RTYI- 1825
++ EL + K + Y + +QNA AF + +
Sbjct: 230 IQAELRRLLKS------------------KPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 1826 -RD-GLAQMEKNAAAGRTPSSVPMATPPPAALDNRIGGAIASKV-------LPPE----N 1872
R + + + T + + + L ++ K LP E N
Sbjct: 272 TRFKQVT----DFLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 1873 PLSDQRNERFGVAVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQS 1932
P L I E ++ + DN + +
Sbjct: 327 PR---------------RLSIIAESIRDG----------------LATWDNWKHVNCDKL 355
Query: 1933 RSSDRASVEN--PAQG-------SVLPMD----EKALSGLQARMER 1965
+ +S+ PA+ SV P LS + + +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 5e-10
Identities = 87/551 (15%), Positives = 161/551 (29%), Gaps = 148/551 (26%)
Query: 2 SEE-EKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
EE + ++ + RL W + ++ + + + L
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVLRI------NYKFLMSPI 98
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAK-EVCDAIAAKCLTGRPKTVEKAQAVFML 119
+ P I D +AK V R + K + +
Sbjct: 99 KTEQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNVS----------RLQPYLKLRQALL- 145
Query: 120 WVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG------AKIIPPKRILKM 172
EL A +V +D + + K VA V + V Q +F P+ +L+M
Sbjct: 146 --ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 173 LPELFDHQDQNVRASSKGL-TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG-- 229
L +L D N + S ++L + ++ +L K + L V L+NV
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLV-LLNVQNAK 257
Query: 230 -------------TARP---TRKIRAEQDKELGQELISEDVGPGPSEE--------STAD 265
T R T + A + + S + P + D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVK--ATKWSE-RKDAVAELTKL--ASTKRIAP 320
+P E+ + P S E ++ W + +LT + +S + P
Sbjct: 318 LPREV--------LTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 321 GDFTEVCRTLKKLITDVNIAVAV----------EAIQAIGNL--ARGLRTHFSGSSRFLL 368
++ ++ L +I + + + N L S +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN-------------- 414
P + +LK K A+H+ ++VD KT +
Sbjct: 429 PSIYLELKVKLE--------NEYALHR----SIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 415 ------------KVPLVRSLTLN--WV--------TFCIETSSKAAVL---KVHKDYVPI 449
++ L R + L+ ++ T + S L K +K Y+
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-- 534
Query: 450 CMECLNDGTPE 460
C ND E
Sbjct: 535 ---CDNDPKYE 542
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 1e-08
Identities = 89/607 (14%), Positives = 176/607 (28%), Gaps = 171/607 (28%)
Query: 582 EDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI 641
+D+ S +S EEI+ + S D V W + +++ VE V L + +
Sbjct: 39 QDMPKSILSKEEIDHIIMS---KDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKF 93
Query: 642 LVRLVCMLPGWSEKNVQ---VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKT 698
L+ + Q + + IE + L F K V + ++
Sbjct: 94 LMS------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQ 142
Query: 699 RA-----------HAMK-----CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 742
+ + + +K + I W+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVA--LDVC-------------LSYKVQCKMDFKIFWL 187
Query: 743 VSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 799
+ + L+ L ++ + ++ IKL +H + +++ L
Sbjct: 188 -----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHS-IQAELRRLLK 239
Query: 800 DVKP---ALLSALDAEYEK---NPFEG---TVVPKKTVRASESTSSVSSGGSDGLPREDI 850
KP LL L N F ++ T R + T +S+ + + +
Sbjct: 240 S-KPYENCLL-VLLNVQNAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHH 294
Query: 851 SGKFTPT-----LVKSLE-------------SP-----------DWKVRLE-----SIEA 876
S TP L+K L+ +P D + + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 877 VNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL---------GAVASAMG 927
+ I+E + ++PA ++F L ++ + ++ L + V + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 928 P--AVEKSSKG---VLSDI---LKCLGDNKK--HMR--------------ECTLTVLD-- 961
VEK K + I LK +N+ H + LD
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 962 -AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFD--WLSKQL-------TGLSGFPDAA 1011
HL + + R D +L +++ +
Sbjct: 473 FYSHIGHHLKNIEH--------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI-QGPALALILER--IK 1068
LK + D + A I++ L + I D+ + +AL+ E I
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLR---IALMAEDEAIF 580
Query: 1069 LNGASQV 1075
QV
Sbjct: 581 EEAHKQV 587
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 7e-15
Identities = 99/633 (15%), Positives = 198/633 (31%), Gaps = 89/633 (14%)
Query: 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--------MRPLERSIEKLDDVRRNKL 496
+ + ++ L + ++R + L+ IA ++G + L +I D+V L
Sbjct: 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL-AL 68
Query: 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 556
+E + V V + S+ E + VR A L + S
Sbjct: 69 AEQLGTFTTLVG---GPEYVHCLLPPLESLATVEETVVRDKAVESL--RAISHEHSPSDL 123
Query: 557 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV-- 614
P K+ G TS+ + R+ S + A+ ++
Sbjct: 124 EAHFVPLVKRLAGGDWFTSRTSAC--------GLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 615 --WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 672
R A S L + + ++ + EI+ + S++ V+ +E
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA---SDEQDSVRLLAVEA---CVN 229
Query: 673 TATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERL---YKIM 726
A P++ + ++ + A + R T +AVGP L ++ +
Sbjct: 230 IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 289
Query: 727 KDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLL 783
+V + + E+ + + ++ K+ + + ++A ++
Sbjct: 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVI 348
Query: 784 GALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843
L +G D + + P L+ L E + V + + + V
Sbjct: 349 MGLSPILGKDN--TIEHLLPLFLAQLKDECPE-------VRLNIISNLDCVNEV------ 393
Query: 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 903
+ +S P +V+ E W+VRL IE + + + +L
Sbjct: 394 -IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE---KLNSLCMAW 449
Query: 904 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963
L D + A L + G E + ++ +L GD R TL ++
Sbjct: 450 LVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507
Query: 964 LAAVHLD----KMVPYVTTALTD---------AKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
D M+P V D AK + + L
Sbjct: 508 SEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK----IGPILDNS--------TL 555
Query: 1011 AHLLKPA-SIAMTDKSSDVRKAAEACIVEILRA 1042
+KP D+ DV+ A+ + + A
Sbjct: 556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 5e-14
Identities = 71/477 (14%), Positives = 152/477 (31%), Gaps = 51/477 (10%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKAL 73
LP+ ++ +V L + P+ + L P + V+DKA+
Sbjct: 51 LPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE--YVHCLLPPLESLATVEETVVRDKAV 108
Query: 74 DALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVM 133
++L A + + + G T + +
Sbjct: 109 ESLRAISHEHSPSD---LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165
Query: 134 EKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVRASSKG 190
+ +N + L EF + I+ M L + +VR +
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVE 225
Query: 191 LTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 250
+ + + + ++ ++ ++ +R + + R + A++ EL + +
Sbjct: 226 ACVNIAQLLPQEDLEALVMPTLRQAAEDKSW-----------RVRYMVADKFTELQKAV- 273
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
PEI + +LV L K E A V E
Sbjct: 274 ----------------GPEITKTDLVP---AFQNLMKDCEAEVRAAAS-----HKVKEFC 309
Query: 311 KLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370
+ S +++ +K+L++D N V I L+ L + LLP+
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPL 367
Query: 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVT 428
L +LK++ P V ++ L +++ + + ++ + ++ VR + ++
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427
Query: 429 FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485
+ +CM L D +R+AA S L + + G +I
Sbjct: 428 LLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 3e-11
Identities = 59/482 (12%), Positives = 156/482 (32%), Gaps = 52/482 (10%)
Query: 590 SLEEIESRLGS------LIPADTVGQLKSAVWKE---RLEAISSLRQQVEAVQNLDQSVE 640
L I LG L+P L ++ E L L V +
Sbjct: 33 KLSTIALALGVERTRSELLPF-----LTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHC 87
Query: 641 ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRA 700
+L L + + + V+ + +E + ++ + + + + +R+A
Sbjct: 88 LLPPLESLA---TVEETVVRDKAVESLRAISH---EHSPSDLEAHFVPLVKRLAGGDWFT 141
Query: 701 HAMKCLTTFSEAVGPG-----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 755
FS + ++ + P V + + + ++K
Sbjct: 142 SRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK 201
Query: 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815
++I + + R ++ + + + + A V P L A + + +
Sbjct: 202 -SEIIPMFSN-LASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWR 257
Query: 816 NPFEGTVVPKKTVR--ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLES 873
VR ++ + + + E P ++ + +VR +
Sbjct: 258 ------------VRYMVADKFTELQKA----VGPEITKTDLVPAFQNLMKDCEAEVRAAA 301
Query: 874 IEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932
V + E + + ++ ++ + D+N+++ A + ++ +G +
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN 359
Query: 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEG--R 990
+ + +L L L D +R ++ LD + + ++ + A+ + A+ R
Sbjct: 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVR 419
Query: 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
+ +++ L L + D +R+AA + + +++ G+E
Sbjct: 420 LAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHA 479
Query: 1051 NL 1052
+
Sbjct: 480 TI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 4e-11
Identities = 77/461 (16%), Positives = 148/461 (32%), Gaps = 49/461 (10%)
Query: 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669
L++ + RL +I L A+ E+L L + + E V + +
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVL-----LALAEQ 71
Query: 670 LAATATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 726
L T V CLL E +A + R A++ L S P + ++
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV 131
Query: 727 K--DHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIK 781
K + + S S +K + + C D R A
Sbjct: 132 KRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD-----DTPMVRRAAAS 186
Query: 782 LLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841
LG K + D +++ P + E + V V A + + +
Sbjct: 187 KLGEFAKVLELDN--VKSEIIPMFSNLASDEQDS-------VRLLAVEACVNIAQL---- 233
Query: 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
LP+ED+ PTL ++ E W+VR + ++ + I +L +
Sbjct: 234 ---LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT---DLVPAFQ 287
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTV 959
+ D + A + + ++ +L I + + D +H++ +V
Sbjct: 288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347
Query: 960 LDAWLAAV-----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014
+ L+ + ++ ++P L D E R ++ L + + LL
Sbjct: 348 IMG-LSPILGKDNTIEHLLPLFLAQLKD--ECPEVRLNIISNLDCVNEVIGIRQLSQSLL 404
Query: 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055
D VR A + + G E ++ L +
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 3e-10
Identities = 63/466 (13%), Positives = 136/466 (29%), Gaps = 64/466 (13%)
Query: 22 HKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLK 81
VR A L + DN E+ P+F +D V+ A++A + +
Sbjct: 175 DDTPMVRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232
Query: 82 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKN-- 139
+ V + + F + ++ + A +N
Sbjct: 233 LLPQED--LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290
Query: 140 -----KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
+V A + + LS + + +IL + EL +Q+V+++ + +
Sbjct: 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350
Query: 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD--KELGQELISE 252
L +GKD L +K E V I + +G +S+
Sbjct: 351 LSPILGKDNTIEHLLPLFLAQLKDECP----EVRLNI-----ISNLDCVNEVIGIRQLSQ 401
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
+ P + L + KW R + + L
Sbjct: 402 SLLP------------------------AIVELAEDA--------KWRVRLAIIEYMPLL 429
Query: 313 ASTKRIAPGDFTE-VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371
A ++ F E + + D A+ A + L ++ ++P +
Sbjct: 430 A--GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATIIPKV 485
Query: 372 LEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVTF 429
L + + + + + ++ ++ V + V VR +
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 430 CIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
+ + + PI + D +V+ A L ++ +
Sbjct: 546 IGPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 5e-08
Identities = 88/640 (13%), Positives = 179/640 (27%), Gaps = 126/640 (19%)
Query: 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 827
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTIYDEDE------------- 63
Query: 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V + + + + + + P L + VR +++E++ I E
Sbjct: 64 VLLALAEQLGTF--TTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE---- 117
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLV-MATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946
P+ F L RL + + + AV+ +
Sbjct: 118 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE---LRQYFRNLCS 174
Query: 947 DNKKHMRECTLTVLDAWLAAV----HLDKMVPYVTTALTD-----------------AKL 985
D+ +R + L + + +++P + +D L
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
Query: 986 GAEGRKDLFDWLSKQLTG----------LSGFPDAAHLLKPASIA----------MTDKS 1025
E + L +Q F + + P M D
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294
Query: 1026 SDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSS 1085
++VR AA + E + E ++ IL IK S ++
Sbjct: 295 AEVRAAASHKVKEFCENLSADCREN-------VIMSQILPCIKEL---------VSDANQ 338
Query: 1086 KVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERM 1145
V + ++ + I + + + V+ + N+ N+
Sbjct: 339 HVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE------ 392
Query: 1146 VVRRFKFEDPRIEQIQELENDMMKYFRE-------DLHRRLLSTDFKKQVDGL--EMLQK 1196
V+ + + I EL D R L +L F ++++ L L
Sbjct: 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 452
Query: 1197 ALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAV 1256
+ +IR+ L L+ F ++ + +P++ D Y +
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHA---------TIIPKVLAMSGDPNYLHRMT-TLF 502
Query: 1257 FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVG 1316
+ L E G TK + LP +L R +
Sbjct: 503 CINVLSEVCG---------QDITTKHM---------LPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 1317 FLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLA 1356
+ I+ LT ++D +++ A L
Sbjct: 545 KIGPILDNSTLQSEV-KPILEKLTQDQDVDVKYFAQEALT 583
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 7e-08
Identities = 98/634 (15%), Positives = 206/634 (32%), Gaps = 105/634 (16%)
Query: 277 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKL 333
D D L P+ + ++ R +++ +L+ +A A G +E+ L
Sbjct: 4 DGDDSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIAL----ALGVERTRSELLPFLTDT 57
Query: 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAM 393
I D + V + + +G + LLP L ++ V + ++L+A+
Sbjct: 58 IYDEDE-VLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 114
Query: 394 HKAGCLNLVDVVEDVKTSV----KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449
+ + D+ V R+ + C S A V +
Sbjct: 115 --SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQY 168
Query: 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI-----EKLDDVRRNKLSEMIAGSG 504
+D TP VR AA S L AK + + ++ I D ++ + + +
Sbjct: 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD-EQDSVRLLAVEAC 227
Query: 505 GDVATGTSSARVQTSGGSVPSVEA---SESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561
++A ++ +P++ +S VR A +
Sbjct: 228 VNIAQLLPQEDLEAL--VMPTLRQAAEDKSWRVRYMVADKFT------------------ 267
Query: 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621
+L +A E++ ++ +L +K + R A
Sbjct: 268 --------------ELQKA----VGPEITKTDLVPAFQNL--------MKDCEAEVRAAA 301
Query: 622 ISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATK--FP 678
+++ E + + I+ +++ C+ S+ N V+ + VI L+ K
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTI 361
Query: 679 KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHKNPKV 734
+ + L L + + ++ R + + L +E +G + + ++ +D +V
Sbjct: 362 EHLLPLFLAQLKDECPEV--RLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA-KWRV 418
Query: 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
I +M GV + L C L A R A L L + G +
Sbjct: 419 RLAIIEYMPLLAGQLGVEFFD-EKLNSLC-MAWLVDHVYAIREAATSNLKKLVEKFGKE- 475
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854
++ + A P R +T + S+ ++ +
Sbjct: 476 -----WAHATIIPKVLAMSGD--------PNYLHR--MTTLFCINVLSEVCGQDITTKHM 520
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 888
PT+++ P VR +++ KI +
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 6e-07
Identities = 68/474 (14%), Positives = 150/474 (31%), Gaps = 71/474 (14%)
Query: 969 LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDV 1028
+++P++T + D E L + L T + G LL P T + + V
Sbjct: 47 RSELLPFLTDTIYDED---EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV 103
Query: 1029 RKAAEACIVEILRAGGQETIEKNL------------KDIQGPALALILERI-KLNGASQV 1075
R A + I +E + + A L +++ A +
Sbjct: 104 RDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163
Query: 1076 SMGPT-----SKSSSKVPKSASNGVSK----HGNRAISSRVIP--TKGARPESIMSVQDF 1124
+ S + V ++A++ + + + S +IP + A E SV+
Sbjct: 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD-SVRLL 222
Query: 1125 AVQSQALLNVKDSNKEDRERMV--VRRFKFEDP----RIEQIQELENDMMKYFREDLHRR 1178
AV++ + ++ ++ +R+ ED R + + K ++ +
Sbjct: 223 AVEACVNIAQLLPQEDLEALVMPTLRQA-AEDKSWRVRYMVADKFTE-LQKAVGPEITKT 280
Query: 1179 LLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL 1238
L F +++ +R + ++ + + + LP +
Sbjct: 281 DLVPAF------QNLMKDCEAEVRAAASHKVKEFCENLS-----ADCRENVIMSQILPCI 329
Query: 1239 FDTLRDEGYSLTESEAAVF----------------LPCLVEKSGHNIEKVREKMRELTKQ 1282
+ + D + + A+V LP + + +VR +
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389
Query: 1283 IVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVAS 1338
+ + LP I+E R R+ ++ + L G E K + +
Sbjct: 390 VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF-DEKLNSLCMA 448
Query: 1339 LTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREM 1392
+ IR+AA + L + G++ + +M D + R
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDP-NYLHRMT 499
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-05
Identities = 92/596 (15%), Positives = 186/596 (31%), Gaps = 105/596 (17%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKIL-----EEANKRIQPAGTGELFGGLRGRLYDSNKN 910
L+ L + D ++RL SI+ ++ I E + P L +YD ++
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPF--------LTDTIYDEDEV 64
Query: 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA---WLAAV 967
L+ LG + +G + +L + + +R+ + L A +
Sbjct: 65 LLAL-AEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 968 HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA------- 1020
L+ + L DW + + + F + A A
Sbjct: 122 DLEAHFVPLVKRLAGG-----------DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 1021 --MTDKSSDVRKAAEACIVEILRAGGQETIE--------KNLKDIQGP---ALALILERI 1067
+D + VR+AA + + E + + ++ D Q I
Sbjct: 171 NLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230
Query: 1068 KLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
A + + A+ S ++ + + A I D
Sbjct: 231 ----AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK-TDLVPA 285
Query: 1128 SQALLNVKDSNKEDRERM---------VVRRFKFEDPRIEQI----QELENDMMKYFRED 1174
Q L+ KD E R + E+ + QI +EL +D ++ +
Sbjct: 286 FQNLM--KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA 343
Query: 1175 LHRRL--LSTDFKKQV---DGLEMLQKAL----PSIRKDIIEVLDILLRWF-VLQFCKSN 1224
L + LS K L + L P +R +II LD + + Q +S
Sbjct: 344 LASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403
Query: 1225 TTCLLK------------VLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272
+++ ++E++P L L E + + ++ +
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF------DEKLNSLCMAWLVDHVYAI 457
Query: 1273 REKMRELTKQIVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG 1328
RE K++V + +P +L N R+ + + L + G +I+
Sbjct: 458 REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT 517
Query: 1329 QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDR 1384
+ L V + + +R +L IL + ++ + + D+
Sbjct: 518 K-HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS--EVKPILEKLTQDQ 570
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 3e-11
Identities = 41/220 (18%), Positives = 90/220 (40%), Gaps = 22/220 (10%)
Query: 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLR 357
W+ K+A++ + +A T+ + + + L L+ I + E +A G +A+
Sbjct: 46 WTVVKNAISIIMVIAKTR---EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102
Query: 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVP 417
++PVL + +++ L+ + KA + + +V D + + +K
Sbjct: 103 ELVKS----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNR 158
Query: 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477
+ LN++ E S K ++P + L+DG VR +A L +A
Sbjct: 159 EDKLTALNFIEAMGENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213
Query: 478 --MRPLERSIEKLDD----VRR---NKLSEMIAGSGGDVA 508
+ + + +E+L+D V + +S ++ G +
Sbjct: 214 KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 16/187 (8%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 915
L++ L+ W V +I + I + +P + L L S +
Sbjct: 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQE 89
Query: 916 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY 975
+ M + K ++ + + + L+ +A + M
Sbjct: 90 IAKAFG---QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEE-IAKANPMLMASI 145
Query: 976 V---TTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAA 1032
V + L+ E + +++ G + F L + D VR +A
Sbjct: 146 VRDFMSMLSSKN--REDKLTALNFIEAM--GENSFKYVNPFLPRIINLLHDGDEIVRASA 201
Query: 1033 EACIVEI 1039
+V +
Sbjct: 202 VEALVHL 208
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 62.1 bits (150), Expect = 2e-09
Identities = 88/726 (12%), Positives = 208/726 (28%), Gaps = 111/726 (15%)
Query: 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-GLRTHFSGSSRFLLPVLLEK 374
+ G + I D + + I +A G ++ LLP L
Sbjct: 81 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD----LLPKLCSL 136
Query: 375 LKEKKP-----------TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLT 423
L + + E + L + LN++ + K+ P +RS
Sbjct: 137 LDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM--IPKFLQFFKHSSPKIRSHA 194
Query: 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--MRP- 480
+ V I + ++A ++ ++ D PEVR L + + + P
Sbjct: 195 VACVNQFIISRTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 481 --------LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532
L+R+ ++ ++V + +E
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEFWLT--------------------------LAEQP 287
Query: 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS-- 590
+ L PV + + + D S+ +
Sbjct: 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIIL---------LKGDVEGGSGGDDTISDWNLR 338
Query: 591 ------LEEIESRLGSLIPADTVGQLK----SAVWKERLEAISSLRQQVEA-----VQNL 635
L+ + + + + LK W + I L E + L
Sbjct: 339 KCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 398
Query: 636 DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT-ATKFPKKCVVLCLLGISERVA 694
+ + L++ + S+K V+ ++ A ++ P + + + +R+
Sbjct: 399 PELIPHLIQCL------SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 452
Query: 695 D--IKTRAHAMKCLTTFSEAVGPGF------IFERLYKIMK--DHKNPKVLSEGILWMVS 744
D + + A T E I + L HKN +L + I +
Sbjct: 453 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512
Query: 745 AVEDFGVSHLKLKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803
+V ++ L+ + ++ L ++ + + V
Sbjct: 513 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 572
Query: 804 ALLSAL------DAEYEKNPFEGTVVPKKTVRASEST-SSVSSGGSDGLPREDISGKFTP 856
++ + P + K + + S ++ G + +
Sbjct: 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 632
Query: 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916
+ + ++ +VR S + + + + ++P + L L ++
Sbjct: 633 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNAT 691
Query: 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH--MRECTLTVLDAWLAAVHLDKMVP 974
+G ++ MG ++ VL +++ + + E T + L V ++ P
Sbjct: 692 WAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI-GRLGYVCPQEVAP 750
Query: 975 YVTTAL 980
+ +
Sbjct: 751 MLQQFI 756
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 9e-06
Identities = 56/436 (12%), Positives = 122/436 (27%), Gaps = 48/436 (11%)
Query: 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 636
L + ED S + ++ L +IP + K + K R A++ + Q + +
Sbjct: 152 LQKICEDSAEILDS-DVLDRPLNIMIPK-FLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209
Query: 637 QSV--EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK----KCVVLCLLGIS 690
+ L + ++ +V++ V + L V L
Sbjct: 210 MLHIDSFIENLFALA---GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ 266
Query: 691 ERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750
+ D A + T +E + + K + PK++ + M + D
Sbjct: 267 D--QDENVALEACEFWLTLAE--------QPICKDVLVRHLPKLIPVLVNGMKYSDID-- 314
Query: 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALD 810
+ LK D + R + L L ++ + + LL +
Sbjct: 315 IILLKGDVEGGSGGDDTISDWN--LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 372
Query: 811 AEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 870
+++ G G+ + P L++ L VR
Sbjct: 373 -------------WVVKESGILVLGAIAEGCMQGM--IPYLPELIPHLIQCLSDKKALVR 417
Query: 871 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930
+ +++ + L L R+ DSNK + A + +
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL 477
Query: 931 EKSSKGVLSDILKCLGDNKKHMRECTLTVL--------DAWLAAVHLDKMVPYVTTALTD 982
+L ++ + + ++ ++P +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 983 AKLGAEGRKDLFDWLS 998
K + L + LS
Sbjct: 538 LKDEDKDLFPLLECLS 553
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 62.0 bits (149), Expect = 2e-09
Identities = 139/1073 (12%), Positives = 306/1073 (28%), Gaps = 96/1073 (8%)
Query: 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE 384
+V + + KL+ D N V A++ +G L ++ + ++ L + K + +
Sbjct: 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQLRD 104
Query: 385 SLTQTLQAMHKA------GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----TS 434
+ L+ + G +V + + + + + +++ I +
Sbjct: 105 ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164
Query: 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-------MRPLERSIEK 487
++ H + + L VR L + S G + L + K
Sbjct: 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK 224
Query: 488 LDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547
D + + + A ++ V + +R+
Sbjct: 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284
Query: 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607
+ K + + + ++ E + + + GS
Sbjct: 285 RCPKEVYPHVSTIINICLK--YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD- 341
Query: 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEV 666
WK R A L V + E + L + E+ V+ V
Sbjct: 342 --DDDMSWKVRRAAAKCLDAVVSTRHEMLP--EFYKTVSPALISRFKEREENVKADVFHA 397
Query: 667 INYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 726
++ + + D LT V I + L+K M
Sbjct: 398 Y------------LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN--IVKALHKQM 443
Query: 727 KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAAT--RNATIKLLG 784
K+ K+ K + V + + ++ L ++++ + + L
Sbjct: 444 KE-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502
Query: 785 ALHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDA- 561
Query: 844 GLPREDISGKFTPTLVKSLESPD--WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
+K L++ D +V+ +I + +I+ +
Sbjct: 562 ----TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD-LPNTLQIFL 616
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
RL + L +TL A S + + + + L N++ ++ TL+ LD
Sbjct: 617 ERLKNEITRLTTVKALTLIA-GSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021
+ L A + D L ++ H+ + A +
Sbjct: 676 ILIKNYS--------------DSLTAAMIDAVLDELPPLIS-----ESDMHVSQMAISFL 716
Query: 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1081
T + + IL L+ A+ + + + G + +
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776
Query: 1082 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1141
+ + S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTD 832
Query: 1142 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSI 1201
R++ E + E+ A ++
Sbjct: 833 SIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS------------PSEEVKSAASYAL 880
Query: 1202 RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1261
+ L L + + + L L L + + + L
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYL----LLHSLKEIISSASVVGLKPYVENIWALL 936
Query: 1262 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1321
++ E R + E ++ T LP + L S ++ R V V F I
Sbjct: 937 LKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAVKFTISD 995
Query: 1322 HGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
H I LK+ + + D +R+ AL T + I + +
Sbjct: 996 HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1048
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 49.7 bits (117), Expect = 1e-05
Identities = 59/523 (11%), Positives = 151/523 (28%), Gaps = 65/523 (12%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK---------TVADSN 65
P + +K+ +EA + L I + P K AD +
Sbjct: 523 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 582
Query: 66 APVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCL--TGRPKTVEKAQAVFMLWVEL 123
V+++A+ + + + G + R TV+ + +++
Sbjct: 583 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI 642
Query: 124 EAVDVFLDVME---KAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--KRILKMLPELFD 178
+ V + + ++ + + + + + + +L LP L
Sbjct: 643 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLIS 702
Query: 179 HQDQNVRASSKGLTLELCRWIGK------DPVKTILFEKMRDTMKKELEVELVNVSGTAR 232
D +V + L + + L +R + + + + A
Sbjct: 703 ESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQAL 762
Query: 233 PTRKIRAEQDKELGQELISEDVGPGPS---EESTADVPPEIDEYELVDPVDILTPLEKSG 289
+L + L + ++S + + P + + +
Sbjct: 763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ-- 820
Query: 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349
F + VK ++ ++ +A L+ I E+ + + + + V A A+
Sbjct: 821 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 880
Query: 350 GNLARG----------------------------------LRTHFSGSSRFLLPVLLEKL 375
G+++ G + +LL+
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 940
Query: 376 KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435
+ + + + L + ++ ++ +K + + RS + V F I
Sbjct: 941 ECAEEGTRNVVAECLGKL---TLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP 997
Query: 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
+ + + K+ + ++ L D VR A + A +
Sbjct: 998 QP-IDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS 1039
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 46.6 bits (109), Expect = 9e-05
Identities = 92/709 (12%), Positives = 228/709 (32%), Gaps = 79/709 (11%)
Query: 23 KNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKA 82
+WKVR A L A+ + + + + P + V+ A ++ LK
Sbjct: 345 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404
Query: 83 ADADAGRYAKEVCDAIAAKCLTG----------------RPKTVEKAQAVFMLWVELEAV 126
LT + K+V+ Q F + EL V
Sbjct: 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464
Query: 127 ---------DVFLDVMEKAIKNKVAKAVV--PAIDVMFQALSEFGAKIIPP--KRILKML 173
V + + ++ +K + + + A+ ++ L ++ P + ++ +
Sbjct: 465 LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV 524
Query: 174 PELFDHQDQNVRASSKGLTLELCRWIG----------KDPVKTILFEKM----RDTMKKE 219
+ + + +T +L + I +K + + + +E
Sbjct: 525 VACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQE 584
Query: 220 LEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279
++ ++ G D ++ E + + +T I L +
Sbjct: 585 VKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDL 644
Query: 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDV 337
+ ++ + + + ++ L L + V L LI++
Sbjct: 645 RPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISES 704
Query: 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK--KPTVAESLTQTLQAMHK 395
++ V+ AI + LA+ + S S +L L+ ++ + ++ QA+
Sbjct: 705 DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764
Query: 396 AG--CLNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452
G L +D++ + V + L + + C+ ++A + +
Sbjct: 765 TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQD 824
Query: 453 CLNDGTPE-VRDAAFSVLAAIAKSVGMRP---LERSIEKLDDVRRNKLSEMIAGSGGDVA 508
N + + +R A L + + + L+ I + ++ + + G ++
Sbjct: 825 VKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSIS 884
Query: 509 TGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDG 568
G +P V +S ++ + S K +S+A V+
Sbjct: 885 VGNLPEY-------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENI----- 932
Query: 569 SGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQL----KSAVWKERLEAIS 623
+ L + E E ++ E +L + P + +L S R ++
Sbjct: 933 -----WALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVT 987
Query: 624 SLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 671
+++ + + Q +D ++ + L + ++ V++ + N A
Sbjct: 988 AVKFTISDHPQPIDPLLKNC--IGDFLKTLEDPDLNVRRVALVTFNSAA 1034
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 9e-08
Identities = 48/423 (11%), Positives = 132/423 (31%), Gaps = 42/423 (9%)
Query: 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNL-------DQSVEILV 643
++ R + + + Q+K+ + + + + + E++
Sbjct: 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMK 137
Query: 644 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF-------PKKCVVLCLLGISERVADI 696
+V +E+ V++ + + Y+ +A ++ + G
Sbjct: 138 IMVDNTG--AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK 195
Query: 697 KTRAHAMKCLTTFSEAVGPGFIFERLYKIM-------KDHKNPKVLSEGILWMVSAVEDF 749
R A+ L + E + ++ +V + + + +
Sbjct: 196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255
Query: 750 GVSHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807
+ +K ++ + ++S + T++ + + DI LA + L
Sbjct: 256 -YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE-IDIAYELAQFPQSPLQ 313
Query: 808 ALDAEYEKNPFEGTVVPKKTVRASE----STSSVSSGGSDGL------PREDISGKFTPT 857
+ + + R +E +VS L I
Sbjct: 314 SYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEF 373
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917
+ +++ + +W+ R ++ A I++ +K + + + + D + + T
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAW 433
Query: 918 TLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRE--CTLTVLDAWLAAVHLDKMV 973
+G +A ++ +++ GV+ L L D+ K T+ L LA +
Sbjct: 434 CIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIY 493
Query: 974 PYV 976
+
Sbjct: 494 NFY 496
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 7e-05
Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 21/206 (10%)
Query: 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353
+ R + +E+ + I L K I D A A
Sbjct: 23 LSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQ 82
Query: 354 RGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413
L L+P + K + ++TL ++ +N ++K
Sbjct: 83 SNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISI--VNAVNP--------VAIK 132
Query: 414 NKVP-LVRSL--TLNWVTFC--------IETSSKAAVLKVHKDYVPICMECLNDGTPEVR 462
+P L ++ T W + ++K V + +P+ E + D EV+
Sbjct: 133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVK 192
Query: 463 DAAFSVLAAIAKSVGMRPLERSIEKL 488
AA + + ++V + +ER I L
Sbjct: 193 AAATAAMTKATETVDNKDIERFIPSL 218
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 9e-04
Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 24/270 (8%)
Query: 683 VLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 742
++ ++ + + D + R A++ L I Y+ M+ + P + I
Sbjct: 218 IMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPAL--FAITIE 266
Query: 743 VSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802
+ V+ ++ + C + + A+ + KF +L +
Sbjct: 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326
Query: 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 862
L+ D + + + +A+ + + +DI P + + +
Sbjct: 327 TQTLTKQDENDDDDDWN-------PCKAAGVCLMLLAT----CCEDDIVPHVLPFIKEHI 375
Query: 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV 922
++PDW+ R ++ A ILE + L + D + + T+G +
Sbjct: 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
Query: 923 ASAMGPAVEKSS--KGVLSDILKCLGDNKK 950
+ A +L +++ L +
Sbjct: 436 CELLPEAAINDVYLAPLLQCLIEGLSAEPR 465
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1974 | |||
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 100.0 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 100.0 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 100.0 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 100.0 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 99.96 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.96 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 99.95 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.94 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.94 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.93 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.89 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.88 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.87 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.87 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.84 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.82 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.82 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.8 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.2 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.03 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.01 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.79 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 98.62 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 98.61 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 98.59 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 98.57 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.54 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.52 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.44 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.43 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.37 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.34 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.29 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.27 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.25 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.24 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.23 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.21 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.19 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.18 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.12 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.08 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.06 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.05 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.01 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 97.98 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.83 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 97.82 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 97.79 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 97.77 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 97.76 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.72 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 97.71 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 97.66 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.65 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 97.62 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 97.6 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 97.55 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.49 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 97.47 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.4 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 97.3 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 97.28 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.27 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.26 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 97.26 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 96.95 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 96.37 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 96.31 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 96.22 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 96.14 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 95.51 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 95.19 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 94.79 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 94.77 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 94.66 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 94.33 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 94.11 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 93.93 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 93.84 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 93.61 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 93.14 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 93.01 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 92.32 | |
| 1elk_A | 157 | Target of MYB1; superhelix of helices, endocytosis | 91.99 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 91.7 | |
| 3rru_A | 152 | TOM1L1 protein; structural genomics, PSI-biology, | 91.42 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 90.97 | |
| 1dvp_A | 220 | HRS, hepatocyte growth factor-regulated tyrosine k | 90.77 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 90.65 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 90.25 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 89.63 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 89.21 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 88.99 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 87.93 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 87.87 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 87.72 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 87.38 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 86.82 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 86.45 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 86.44 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 85.61 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 85.55 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 85.53 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 84.73 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 83.62 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 83.58 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 80.06 |
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-63 Score=578.40 Aligned_cols=256 Identities=28% Similarity=0.570 Sum_probs=247.7
Q ss_pred hhcccCCCChHHHHh----hhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhh
Q 000166 1130 ALLNVKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDI 1205 (1974)
Q Consensus 1130 ~~~~~~~~~K~~R~~----~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~ 1205 (1974)
|++ ..+++|++|++ +++++|+|++||+|+|++|++||.+|++++++.+|||+|||+|++|+++|++.++++++++
T Consensus 3 ~~l-~~~~~K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~ 81 (266)
T 2of3_A 3 LLL-SDNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSL 81 (266)
T ss_dssp CSB-CCSSHHHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred Cce-ecCccHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHH
Confidence 444 34788999984 4578999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhh
Q 000166 1206 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVN 1285 (1974)
Q Consensus 1206 i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~ 1285 (1974)
++++|++|||+++||||+|++|++++||+|.++|++|.+.+|+|+||||++|||+||+|+||+||.||+.+|+|++.++.
T Consensus 82 ~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~ 161 (266)
T 2of3_A 82 LSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD 161 (266)
T ss_dssp HHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccccccchH---HHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000166 1286 FYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKIL 1362 (1974)
Q Consensus 1286 vyp~skvf~~l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~~Kal---~~iA~~i~drD~~VR~AALn~l~~~Y~~~ 1362 (1974)
+||++++|+|+++|++|||||||.|||+||+++|++||+. +.|++ +.||++++|||++||+|||||++++|.++
T Consensus 162 v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 162 VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999996 67899 99999999999999999999999999999
Q ss_pred chhHHHHhccCCHHHHhhHHHHHHHhH
Q 000166 1363 GEDIWRYVGKLTDAQKSMLDDRFKWKV 1389 (1974)
Q Consensus 1363 Gd~v~k~vg~ls~k~~smLeer~kr~~ 1389 (1974)
||+||+++|+|++++++||||||||++
T Consensus 239 Gd~v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 239 GDQMWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp TTHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhcCCHHHHHHHHHHHhhcc
Confidence 999999999999999999999999975
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=384.21 Aligned_cols=231 Identities=25% Similarity=0.440 Sum_probs=219.7
Q ss_pred CCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHH-hh-hcCCCC--CCChhHHHHHHHHHh-cchhHHHHHH
Q 000166 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK-LA-STKRIA--PGDFTEVCRTLKKLI-TDVNIAVAVE 344 (1974)
Q Consensus 270 iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~-L~-~~pKi~--~~dy~dL~~~Lkk~l-~DsNv~vv~~ 344 (1974)
.|||||+|||||++|||+ +|++.+.|+||+||++||++|.. ++ +.+++. .++|+++++.|++.| .|+|+.|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~~-~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLPK-DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSCT-THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CchHhhcChhhhhhhCCh-hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHH
Confidence 489999999999999995 89999999999999999999999 87 689998 689999999999999 5999999999
Q ss_pred HHHHHHHHHHHhc-cccc-cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC------CChhhhHHHHHHHhhcCC
Q 000166 345 AIQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC------LNLVDVVEDVKTSVKNKV 416 (1974)
Q Consensus 345 A~~~i~~LA~gLr-~~F~-~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~------~~l~~~~e~i~~al~~Kn 416 (1974)
|++|++.||+||| +.|. +|...++|+||++|||||++|++++..||++|+.+ + ..|+++++++..+|+|||
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~ 159 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKT 159 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999 99999999999999999999999999999999997 4 339999999999999999
Q ss_pred chhHHHHHHHHHHHHhhCCh--hHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHH
Q 000166 417 PLVRSLTLNWVTFCIETSSK--AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (1974)
Q Consensus 417 P~vk~etl~~L~r~l~~~~~--~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk 493 (1974)
|++|.+++.||.+++...+. ..+.+.+ +.++|.+.++++|++++||++|++||+++++++|++.+.+++.+||+.||
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKR 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHH
Confidence 99999999999999998765 4556788 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000166 494 NKLSEMIAG 502 (1974)
Q Consensus 494 ~KI~e~~~~ 502 (1974)
+||++++++
T Consensus 240 ~ki~~~~~~ 248 (249)
T 2qk1_A 240 KKIEETVKT 248 (249)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999986
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=380.68 Aligned_cols=240 Identities=24% Similarity=0.357 Sum_probs=187.4
Q ss_pred CchhHhhHhhhcCCCcccccCCCChhHHHHHHHHHHHHhhhcCCC--CC---hhhhhhhhhhhhhcCCCCHHHHHHHHHH
Q 000166 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDP--KD---NRIRELGPLFKKTVADSNAPVQDKALDA 75 (1974)
Q Consensus 1 m~~~~~~~~~~~~Lpl~erL~hK~WKaRl~ayeel~~~f~~~~d~--~d---~~~~~~~~l~kk~v~DsN~~aqEk~lea 75 (1974)
|+.||+ .||++|||+|||.|||||+|++|||+|.+.|+..... +| ..|..+..+++|++.|+|++||++++++
T Consensus 1 m~~~e~--~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~ 78 (278)
T 4ffb_C 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVA 78 (278)
T ss_dssp ------------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcch--hhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 886554 4899999999999999999999999999999764322 22 2367778899999999999999999999
Q ss_pred HHHHHHHcChhh------hhhhhHHHHHHHhhhhc-CChhhHHHHHHHHHHHHhhchh-hhHHHHHHHHhhccCchhHHH
Q 000166 76 LIAYLKAADADA------GRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV-DVFLDVMEKAIKNKVAKAVVP 147 (1974)
Q Consensus 76 l~~~l~~a~~~~------~~~~~~v~~~lveK~L~-~r~ktk~~a~e~~l~~vE~e~~-~~v~e~ll~~~~~K~PKvvaa 147 (1974)
+..|+..++... ...+..+++.|++|||+ +|+++++.|.++++.++|.... +.+++.++++++|||||++++
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~ 158 (278)
T 4ffb_C 79 LNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAA 158 (278)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHH
T ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHH
Confidence 999998765422 12356789999999997 6999999999999999998764 788999999999999999999
Q ss_pred HHHHHHHHHHhhCCCccChhH----HHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCc--hhhHHHhhhchHHHHHHHH
Q 000166 148 AIDVMFQALSEFGAKIIPPKR----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD--PVKTILFEKMRDTMKKELE 221 (1974)
Q Consensus 148 ai~~l~~~l~~FG~kvv~~K~----ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~--~lk~~L~~~Lkp~q~keLe 221 (1974)
|+.||.++|++||++++++++ +++.++++|+|+|++||++|++++++||+|+|+. ++...++++|||+|+++||
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le 238 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHH
Confidence 999999999999999998775 6778999999999999999999999999999964 2334567999999999999
Q ss_pred HHHHhcCCCCCC--cchhhhHHh
Q 000166 222 VELVNVSGTARP--TRKIRAEQD 242 (1974)
Q Consensus 222 ~efek~~~~~~P--~R~~Rs~q~ 242 (1974)
++|+|+.+.++| +|+.+.+++
T Consensus 239 ~~f~k~~~~~~~~~~~~~~~~~~ 261 (278)
T 4ffb_C 239 KLFAKVGDEPSSSKMLFEWEKRE 261 (278)
T ss_dssp HHHSCCCC-------CCHHHHHH
T ss_pred HHHHhcCCCCCCCCcchhhhHhh
Confidence 999999876544 344444333
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=319.24 Aligned_cols=231 Identities=29% Similarity=0.467 Sum_probs=218.0
Q ss_pred CccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhc-CCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHH
Q 000166 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQA 348 (1974)
Q Consensus 271 Dp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~-pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~ 348 (1974)
|||||++||||+++|| ++|++.+.|++|++|++|++.|..+++. +++..++|+++++.|++++. |+|..|+..|++|
T Consensus 2 d~~d~~~~~di~~~l~-~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMP-KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHhCCcccccccCC-HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 8999999999999999 5899999999999999999999998875 88888899999999999996 9999999999999
Q ss_pred HHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000166 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1974)
Q Consensus 349 i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1974)
++.||+++|+.|.+|...++|+++++|+|+|+.||+++..||++++.. .+++.+++.+..+++|+||++|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999984 789999999999999999999999999999
Q ss_pred HHHhhCChh-HHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCC
Q 000166 429 FCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504 (1974)
Q Consensus 429 r~l~~~~~~-~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~ 504 (1974)
+++..+.+. .....+..++|.++++++|++++||++|.++|+.+++.+|++.+.+++.+||+.++++|+++++++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~ 235 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAE 235 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 999887543 2345668999999999999999999999999999999999999999999999999999999999753
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-30 Score=304.10 Aligned_cols=226 Identities=16% Similarity=0.199 Sum_probs=170.1
Q ss_pred CcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc----CCCccchHHHHHHHHHHHHHHHHhcCC-
Q 000166 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML----PGWSEKNVQVQQQVIEVINYLAATATK- 676 (1974)
Q Consensus 602 ~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~----PgwkesNfqV~~k~leil~~la~~~~~- 676 (1974)
+| +.++|.|++||+|++|||++.+.+..........+.+..+.... ..++|+|++|++++++++..++..+..
T Consensus 12 lp--l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP--LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC--HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred CC--HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 55 66899999999999999999999987433222212221111111 235799999999999999999976432
Q ss_pred -----CCccchhhhccchhhc-cccch--hhhHHHHHHHHHHHhhch-HhHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 000166 677 -----FPKKCVVLCLLGISER-VADIK--TRAHAMKCLTTFSEAVGP-GFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (1974)
Q Consensus 677 -----fs~~~~~~~l~~lveK-lgD~K--~r~~a~e~L~~~aE~~~p-~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~ 747 (1974)
++..++..+++++++| +||.| +|..+.++|+.++|...+ ..+++.+..+ .+|||||++++|+.||..+|.
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~-l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPF-FEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGG-GGCSCHHHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHH
Confidence 2345678899999999 79976 789999999999998765 5666667666 689999999999999999999
Q ss_pred HhccCccchHhH----HHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchh----HhhhhcchHHHHHHHHHHHhcCCCC
Q 000166 748 DFGVSHLKLKDL----IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI----KGFLADVKPALLSALDAEYEKNPFE 819 (1974)
Q Consensus 748 eFG~~~l~~K~l----I~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l----~~~l~dlkpall~~Ie~EF~K~~~~ 819 (1974)
+||+..+++++. ++++.++ |+++|+.||++|++++++||+|+|+.+ .+||+++||+++++|+++|+|++++
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~ 247 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDE 247 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC-
T ss_pred HhCCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCC
Confidence 999999998764 4467776 999999999999999999999999876 4688999999999999999999998
Q ss_pred CCCCCccccccc
Q 000166 820 GTVVPKKTVRAS 831 (1974)
Q Consensus 820 ~~p~p~R~~r~~ 831 (1974)
+||+|+|+.+.+
T Consensus 248 ~~~~~~~~~~~~ 259 (278)
T 4ffb_C 248 PSSSKMLFEWEK 259 (278)
T ss_dssp ------CCHHHH
T ss_pred CCCCCcchhhhH
Confidence 888887765543
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-29 Score=289.30 Aligned_cols=227 Identities=15% Similarity=0.186 Sum_probs=210.6
Q ss_pred CCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHH-HHHHcccCCC--CCCccchHHHHhhhc-cchhHhHHHHHH
Q 000166 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMATL 916 (1974)
Q Consensus 841 ~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~-il~~ankrI~--p~~~geL~~aLk~Rl-~DsNk~lv~~al 916 (1974)
..|++|+|||+++||++|...+.++||++|+||+++|.. +++. +++|. ...|++++.+|++.+ +|+|.+|+..|+
T Consensus 4 ~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 4 MASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp SCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hHhhcChhhhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 358999999999999999999999999999999999999 9975 58888 456899999999999 899999999999
Q ss_pred HHHHHHHHhcC-hhHH-hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc------c-chhhhHHHHHHHhcccCCc
Q 000166 917 ITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKLGA 987 (1974)
Q Consensus 917 ~ii~~lA~amG-~~~~-k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~------g-l~~~~~~i~~~L~~~~~~p 987 (1974)
++++.||+++| +.|. +|...++|+++++|+|+|+.||+++..||++|++.+ + ++.+++.+..+|.++ ||
T Consensus 83 ~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~ 160 (249)
T 2qk1_A 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP 160 (249)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--Ch
Confidence 99999999999 9999 999999999999999999999999999999999999 7 999999999999976 69
Q ss_pred chHHHHHHHHHHHhccCCCC-----cch-hhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHH
Q 000166 988 EGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (1974)
Q Consensus 988 ~~R~e~l~wL~~~l~~~~~~-----~~~-~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~ 1061 (1974)
..|.+++.||.+.+...+.. +.+ ..++..+..+|.|.+++||++|.++|+.+++++|.+.|.+++.+|++.++.
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHH
Confidence 99999999999999887653 234 556666888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000166 1062 LILERIKLN 1070 (1974)
Q Consensus 1062 ~i~~~l~k~ 1070 (1974)
+|.++++|+
T Consensus 241 ki~~~~~~~ 249 (249)
T 2qk1_A 241 KIEETVKTL 249 (249)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999874
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=274.09 Aligned_cols=218 Identities=20% Similarity=0.248 Sum_probs=198.3
Q ss_pred HHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Q 000166 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (1974)
Q Consensus 592 Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~-~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~l 670 (1974)
|++.+++..++++++..+|+|++||.|++|++.|.+.+++ .++.....|++++|+.. ++.|+|++|++++|+++.++
T Consensus 37 ~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~l--r~~d~N~~v~~~~L~~L~~l 114 (266)
T 2of3_A 37 SQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL--RFFETNPAALIKVLELCKVI 114 (266)
T ss_dssp HHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHH--HTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999999999999987 55666778999999974 57899999999999999998
Q ss_pred HHhc----CCCCccchhhhccchhhccccch--hhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 000166 671 AATA----TKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVS 744 (1974)
Q Consensus 671 a~~~----~~fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ 744 (1974)
+++. ..++...+..++|.++||+||.| +|+.++++|..+++.++|++|+++++++ ++|||+|++.|||.||.+
T Consensus 115 ~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g-~ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 115 VELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDA-LKSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHG-GGCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHH
Confidence 7654 35788888999999999999998 9999999999999999999999999997 599999999999999999
Q ss_pred HHHHhccCccchHhHH---HHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcC
Q 000166 745 AVEDFGVSHLKLKDLI---DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1974)
Q Consensus 745 ai~eFG~~~l~~K~lI---~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~ 816 (1974)
+|+.||.. ..+ .+ +.+-++ ++++|++||++|+++++++|+++|+.++.++++++|+.+++||+.|.+.
T Consensus 194 li~~~G~~--~~~-~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 194 YITNAGIS--PLK-SLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHHCSG--GGG-GGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC--ccc-cccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 99999997 334 55 777777 9999999999999999999999999999999999999999999999864
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=266.59 Aligned_cols=228 Identities=18% Similarity=0.257 Sum_probs=210.3
Q ss_pred CCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHH
Q 000166 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLG 920 (1974)
Q Consensus 842 ~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~ 920 (1974)
.|++|++||+++|+++|++.+.|++|++|++|++.+..+++.. +.+....+++++.+|+++| +|+|.+|...|+++++
T Consensus 4 ~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 4 MDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp HHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhCCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999863 4555556799999999999 5999999999999999
Q ss_pred HHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHH
Q 000166 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1974)
Q Consensus 921 ~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~ 1000 (1974)
.+|.++|+.|.+|...++|.++.+|+|+|+.||+++..||++++..++++.+++.+...|.++ ||..|.+++.||...
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975 799999999999998
Q ss_pred hccCCC----CcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccC
Q 000166 1001 LTGLSG----FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (1974)
Q Consensus 1001 l~~~~~----~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~ 1072 (1974)
+..... .+.+..++..++.||+|++++||++|.++|+.++.++|.+.+.+++.+|++..+++|.++++++..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 877642 124456666789999999999999999999999999999999999999999999999999999754
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-22 Score=282.49 Aligned_cols=888 Identities=16% Similarity=0.159 Sum_probs=538.3
Q ss_pred cccccCCCChhHHHHHHHHHHHHhh----------------hcCCCCChh----------------------------hh
Q 000166 16 WEDRLLHKNWKVRNEANIDLAALCD----------------SITDPKDNR----------------------------IR 51 (1974)
Q Consensus 16 l~erL~hK~WKaRl~ayeel~~~f~----------------~~~d~~d~~----------------------------~~ 51 (1974)
|-+.|.|++|+.|..|...+...+. .+.|++... +.
T Consensus 53 Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~ 132 (1230)
T 1u6g_C 53 ILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK 132 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHH
Confidence 6777889999999999887766542 122333211 11
Q ss_pred hhhhhhhhhcCC-CCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHhhhhc-CChhhHHHHHHHHHHHHhhch---h
Q 000166 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA---V 126 (1974)
Q Consensus 52 ~~~~l~kk~v~D-sN~~aqEk~leal~~~l~~a~~~~~~~~~~v~~~lveK~L~-~r~ktk~~a~e~~l~~vE~e~---~ 126 (1974)
...+.+-+.+.| .|..+++.+++++..+++..+.....+...+++.+.. +|. ..+..+..|..++-.+++.-. .
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~-~L~~~~~~vR~~a~~al~~l~~~~~~~~~ 211 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP-QLTSPRLAVRKRTIIALGHLVMSCGNIVF 211 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGG-GGGCSSHHHHHHHHHHHHHHTTTC----C
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHhcCHHHH
Confidence 111112234564 8899999999999999877554333344556666544 455 478899999999999887632 2
Q ss_pred hhHHHHHHHHhhccC-chhHHHHHHHHHHHHHhhCCCccC-hhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchh
Q 000166 127 DVFLDVMEKAIKNKV-AKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV 204 (1974)
Q Consensus 127 ~~v~e~ll~~~~~K~-PKvvaaai~~l~~~l~~FG~kvv~-~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~l 204 (1974)
+.++..++..+.+.. +.+...++.++..++..+|....+ +..++..+-..+.+.|..||..+...+..+.+..|.+ +
T Consensus 212 ~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~ 290 (1230)
T 1u6g_C 212 VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-V 290 (1230)
T ss_dssp TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-C
T ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-H
Confidence 356777777776543 678888899999999988864333 5678888888889999999999999999999999975 5
Q ss_pred hHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCC
Q 000166 205 KTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTP 284 (1974)
Q Consensus 205 k~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~k 284 (1974)
.+++ ..+-|..++- +.. .|. + ..... + ..++.. +.. ...++.|.+
T Consensus 291 ~~~l-~~li~~ll~~-------l~~--d~~-~-~~~~d-----~----~~~~~~--~~~-~~~~~~~~~----------- 335 (1230)
T 1u6g_C 291 YPHV-STIINICLKY-------LTY--DPN-Y-NYDDE-----D----EDENAM--DAD-GGDDDDQGS----------- 335 (1230)
T ss_dssp HHHH-HHHHHHHTTC-------CCC--C----------------------------------------------------
T ss_pred HHhH-HHHHHHHHHH-------hCC--CCC-C-CCccc-----c----cccccc--ccc-ccccchhhc-----------
Confidence 5654 5555554322 111 111 1 00000 0 000000 000 000000100
Q ss_pred CCchhhhhhhccCChHHHHHHHHHHHHhhhc-CCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc-----
Q 000166 285 LEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT----- 358 (1974)
Q Consensus 285 lpk~~f~~~l~s~KWkeRkEALe~L~~L~~~-pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~----- 358 (1974)
.+.|..-.+..|+.|+.|++.|..+... +.....-|..++..|...+.|.+-.|...+++++..+.+.++.
T Consensus 336 ---~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 412 (1230)
T 1u6g_C 336 ---DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL 412 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----
T ss_pred ---ccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccc
Confidence 0122233567899999999999888752 2111223667778888888899999999999999999987753
Q ss_pred --------------ccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCC-----ChhhhHHHHHHHhhcCCc--
Q 000166 359 --------------HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL-----NLVDVVEDVKTSVKNKVP-- 417 (1974)
Q Consensus 359 --------------~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~-----~l~~~~e~i~~al~~KnP-- 417 (1974)
.+..|...+++.++..++|....||.++..+|..|+.. +. .++.+++.+...|+++++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~-~~~~l~~~l~~ll~~l~~~L~d~~~~~ 491 (1230)
T 1u6g_C 413 CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSSSS 491 (1230)
T ss_dssp --------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-STTTTGGGHHHHHHHHHHHTTCSSSCH
T ss_pred cCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-chhhhHHHHHHHHHHHHHHHcCCCCcc
Confidence 34567788888888889999999999999999999875 21 256788888899999886
Q ss_pred hhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh------hHHHHHhhcC---
Q 000166 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM------RPLERSIEKL--- 488 (1974)
Q Consensus 418 ~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge------~~l~~~l~~L--- 488 (1974)
.++.+++.++...+....+..+.+++..++|.++.+++|++..||..|..+++.+++.+|+ ..+.+|++.+
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTC 571 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence 9999999999999987766655567788999999999999999999999999999999997 2333333222
Q ss_pred ----------CHHHHHHHHHHH----hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCC
Q 000166 489 ----------DDVRRNKLSEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554 (1974)
Q Consensus 489 ----------d~~kk~KI~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~ 554 (1974)
+..-|.....++ ...|.. . .+. -+...+.= .... ......
T Consensus 572 ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~-~--~~~----------------~~~~l~~L-~~~l--~~e~~r---- 625 (1230)
T 1u6g_C 572 TIKRLKAADIDQEVKERAISCMGQIICNLGDN-L--GSD----------------LPNTLQIF-LERL--KNEITR---- 625 (1230)
T ss_dssp HHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG-C--CTH----------------HHHHHHHH-HHHT--TSSSHH----
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCch-h--hhh----------------HHHHHHHH-HHHh--ccchhH----
Confidence 222222222222 111100 0 000 00000000 0000 000000
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc
Q 000166 555 KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN 634 (1974)
Q Consensus 555 ~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~ 634 (1974)
.++.. .-+.-..+. . +. +.+.-+..++ +.+.+.+.+.+|..|.++++.+...+.....
T Consensus 626 -------~~~~~-al~~i~~~~--~------~~-----~~~~~~~~i~-~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~ 683 (1230)
T 1u6g_C 626 -------LTTVK-ALTLIAGSP--L------KI-----DLRPVLGEGV-PILASFLRKNQRALKLGTLSALDILIKNYSD 683 (1230)
T ss_dssp -------HHHHH-HHHHHTTCS--S------CC-----CCHHHHHHHH-HHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred -------HHHHH-HHHHHHhCc--c------cc-----chHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHhcccc
Confidence 00000 000000000 0 00 1111122222 3567888999999999999999988877432
Q ss_pred cchhHHHHHHHHHhc-CCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhh
Q 000166 635 LDQSVEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713 (1974)
Q Consensus 635 ~~~~~~~Lvr~l~~~-PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~ 713 (1974)
.. ..+.+..+|... |.+.++++.+....++++..++...+.........+++.++..+....+...+.+.+..+....
T Consensus 684 ~~-~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l 762 (1230)
T 1u6g_C 684 SL-TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQAL 762 (1230)
T ss_dssp TC-CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHH
Confidence 21 234555555433 5678999999999999999988654332222344555666655555443333333333222211
Q ss_pred ----c----hHhHHHHHHH-----------------------h----------------hhhcCChhhHHHHHHHHHHHH
Q 000166 714 ----G----PGFIFERLYK-----------------------I----------------MKDHKNPKVLSEGILWMVSAV 746 (1974)
Q Consensus 714 ----~----p~~V~~~l~~-----------------------~----------------~~~~KnPKv~ae~l~wl~~ai 746 (1974)
. ..-++..++. . +...|+|......-.|...++
T Consensus 763 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 842 (1230)
T 1u6g_C 763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSL 842 (1230)
T ss_dssp HTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 0 1111111111 1 111222321111112222445
Q ss_pred HHhccCccch---HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000166 747 EDFGVSHLKL---KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1974)
Q Consensus 747 ~eFG~~~l~~---K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~ 823 (1974)
.++|.. .++ ..+++.+.++ |.++|+.||++|...||.+.. | .+..| -|.+++.|+.+ +
T Consensus 843 ~~~g~~-~~~~~~~~l~~~~~~~-l~~~~~~Vr~aAa~aLg~l~~--~-~~~~~----lp~ll~~l~~~---------~- 903 (1230)
T 1u6g_C 843 GEVGHH-IDLSGQLELKSVILEA-FSSPSEEVKSAASYALGSISV--G-NLPEY----LPFVLQEITSQ---------P- 903 (1230)
T ss_dssp HHHHHH-SCCCSCTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHH--H-THHHH----HHHHHHHHHSC---------G-
T ss_pred HHhccc-CCCcccccHHHHHHHH-hCCCCHHHHHHHHHHhHHHhc--c-CHHHH----HHHHHHHHhcc---------c-
Confidence 555542 222 3577788886 999999999999999999873 1 22223 35666666532 0
Q ss_pred Cccccccc--cC-cCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHH
Q 000166 824 PKKTVRAS--ES-TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900 (1974)
Q Consensus 824 p~R~~r~~--~~-~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aL 900 (1974)
..|...-. .+ ... .+.++.-| ...+|.+.|+..+++.+|.+|..+-+-+..++.-. ..++++.|
T Consensus 904 ~~~~~~l~al~e~i~~--~~~~~~~~---~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~--------~~~l~p~l 970 (1230)
T 1u6g_C 904 KRQYLLLHSLKEIISS--ASVVGLKP---YVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--------PETLLPRL 970 (1230)
T ss_dssp GGHHHHHHHHHHHHHS--SCSTTTHH---HHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS--------GGGTHHHH
T ss_pred hhhHHHHHHHHHHHhc--CChhhHHh---hHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccC--------hHHHHHHH
Confidence 01110000 00 000 00111111 13457778888899999999999999999888521 26799999
Q ss_pred hhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000166 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1974)
Q Consensus 901 k~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1974)
..++.|+|..+-..++.++..+...+|+.+..|.+.++++++..|.|....||.++..||..++...+ +.+.+.+..
T Consensus 971 ~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~-~~~~~~l~~-- 1047 (1230)
T 1u6g_C 971 KGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP-SLIRDLLDT-- 1047 (1230)
T ss_dssp TTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCG-GGTGGGHHH--
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCh-HhHHHHHHH--
Confidence 99999999999888988888888888999999999999999999999999999999999999997765 222222111
Q ss_pred hcccCCcchHHHHHHHHHHHhccCCCCcchhhhhh-hHhhhccCCChHHHHHHHHHHHHHHHhc
Q 000166 981 TDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK-PASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1974)
Q Consensus 981 ~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~-p~~~~L~Dr~~dVRkaA~~~L~~~m~~~ 1043 (1974)
++..|... ....+++...+. --|.+..|++.+|||+|.++|.+++.+.
T Consensus 1048 ------------~lp~l~~~---~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~ 1096 (1230)
T 1u6g_C 1048 ------------VLPHLYNE---TKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSC 1096 (1230)
T ss_dssp ------------HHHHHHHT---TSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSS
T ss_pred ------------HHHHHHHH---hcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHH
Confidence 22222111 111111111000 1345566777777777777777777664
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-21 Score=273.36 Aligned_cols=869 Identities=12% Similarity=0.124 Sum_probs=506.4
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCC--CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~--~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~ 366 (1974)
.+.+++.++..-.|..|++.|...+..+.+.- .....++..|-+.+.|.|..|-..|+.|++.++.+++. +|...
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~ 86 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 86 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 57888999999999999999998776554432 23557889999999999999999999999999998876 67888
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----------hhhhHHHHHHHhh-cCCchhHHHHHHHHHHHHhhCC
Q 000166 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----------LVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS 435 (1974)
Q Consensus 367 ~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~----------l~~~~e~i~~al~-~KnP~vk~etl~~L~r~l~~~~ 435 (1974)
+++.+++.+.|.+..||.++..+|..++...... ..++++.+..+++ +.++.+|..++..|...+...+
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999998761111 4567777888888 6899999999999999987554
Q ss_pred hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000166 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSAR 515 (1974)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~ 515 (1974)
.. +.+.+..+++.++.+++|+++.||++|..+|+.+....|+..+..++ ..+.+.+..... + .
T Consensus 167 ~~-l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l--------~~l~~~L~~~~~------~--~ 229 (1230)
T 1u6g_C 167 GL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLI--------EHLLSELSKNDS------M--S 229 (1230)
T ss_dssp SS-CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHH--------HHHHHHHHHTCS------S--C
T ss_pred hH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH--------HHHHHHhccCCc------h--h
Confidence 32 22345778999999999999999999999999999888865322221 123333322100 0 0
Q ss_pred ccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHH
Q 000166 516 VQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIE 595 (1974)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e 595 (1974)
. + .. .=++-
T Consensus 230 ~---r---------------~~-----------------------------------------------------a~~~l 238 (1230)
T 1u6g_C 230 T---T---------------RT-----------------------------------------------------YIQCI 238 (1230)
T ss_dssp S---C---------------TT-----------------------------------------------------HHHHH
T ss_pred H---H---------------HH-----------------------------------------------------HHHHH
Confidence 0 0 00 00000
Q ss_pred HHHhccCc-------HhHHHhhhhccHHHHHHHHHHHHHHHHhhhc-c-chhHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 000166 596 SRLGSLIP-------ADTVGQLKSAVWKERLEAISSLRQQVEAVQN-L-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666 (1974)
Q Consensus 596 ~~~~~l~~-------~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~-~-~~~~~~Lvr~l~~~PgwkesNfqV~~k~lei 666 (1974)
..+...++ ++++..+ .+.+...++ . ....+.+-.+....+ +.--..+...+..
T Consensus 239 ~~l~~~~~~~~~~~l~~l~~~l---------------l~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~l~~li~~ 300 (1230)
T 1u6g_C 239 AAISRQAGHRIGEYLEKIIPLV---------------VKFCNVDDDELREYCIQAFESFVRRCP---KEVYPHVSTIINI 300 (1230)
T ss_dssp HHHHHHSSGGGTTSCTTHHHHH---------------HHHHSSCCTTTHHHHHHHHHHHHHCTT---CCCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHH---------------HHHhcCCCHHHHHHHHHHHHHHHHHCh---HHHHHhHHHHHHH
Confidence 00000111 1122211 111111100 0 001122222222111 1101122222222
Q ss_pred HHHHHHhcCCCCcc-chhhh--cc-------------ch-hhccccchhhhHHHHHHHHHHHhhch--HhHHHHHHHhh-
Q 000166 667 INYLAATATKFPKK-CVVLC--LL-------------GI-SERVADIKTRAHAMKCLTTFSEAVGP--GFIFERLYKIM- 726 (1974)
Q Consensus 667 l~~la~~~~~fs~~-~~~~~--l~-------------~l-veKlgD~K~r~~a~e~L~~~aE~~~p--~~V~~~l~~~~- 726 (1974)
+.......+.+... ..... +. .. .+.-..-++|..+.++|..++...+. ..+++.+++.+
T Consensus 301 ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~ 380 (1230)
T 1u6g_C 301 CLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 380 (1230)
T ss_dssp HTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHH
T ss_pred HHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 21111000000000 00000 00 00 00001135789999999999985542 23333333333
Q ss_pred --hhcCChhhHHHHHHHHHHHHHHhccCc--------------------cchHhHHHHHhhhcCCCccHHHHHHHHHHHH
Q 000166 727 --KDHKNPKVLSEGILWMVSAVEDFGVSH--------------------LKLKDLIDFCKDTGLQSSAAATRNATIKLLG 784 (1974)
Q Consensus 727 --~~~KnPKv~ae~l~wl~~ai~eFG~~~--------------------l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~ 784 (1974)
+...++.|+.+++..+..++...|... --+..+++.+... |.+.++.||.+++.+++
T Consensus 381 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~-l~~~~~~vr~~~~~~L~ 459 (1230)
T 1u6g_C 381 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ-MKEKSVKTRQCCFNMLT 459 (1230)
T ss_dssp STTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH-TTCSCHHHHHHHHHHHH
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHH-hccCCHHHHHHHHHHHH
Confidence 356789999999999999998876410 1235677777776 99999999999999999
Q ss_pred HHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCC
Q 000166 785 ALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES 864 (1974)
Q Consensus 785 ~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d 864 (1974)
.+-...+..+.++++.+= +.+++.+.|
T Consensus 460 ~l~~~~~~~l~~~l~~ll-----------------------------------------------------~~l~~~L~d 486 (1230)
T 1u6g_C 460 ELVNVLPGALTQHIPVLV-----------------------------------------------------PGIIFSLND 486 (1230)
T ss_dssp HHHHHSTTTTGGGHHHHH-----------------------------------------------------HHHHHHTTC
T ss_pred HHHHHchhhhHHHHHHHH-----------------------------------------------------HHHHHHHcC
Confidence 887765544544443333 334444555
Q ss_pred CCh--HHHHHHHHHHHHHHHHcccC-CCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcCh-------hHHhhh
Q 000166 865 PDW--KVRLESIEAVNKILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP-------AVEKSS 934 (1974)
Q Consensus 865 ~~W--K~RkEaLe~v~~il~~ankr-I~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~-------~~~k~~ 934 (1974)
++| .+|.+++..+..++...++. +.|- +..++..|-..+.|.|..+...|+.+++.++.++|+ .+.+|.
T Consensus 487 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~-l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 565 (1230)
T 1u6g_C 487 KSSSSNLKIDALSCLYVILCNHSPQVFHPH-VQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI 565 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHSSCGGGGHHH-HTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHhCCHHHHHhH-HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence 555 78999999999988633222 3332 367888888889999999989999999999999998 789999
Q ss_pred hhhhHHHHHHh--ccCchhHHHHHHHHHHHHHHhccc--hhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC--Cc
Q 000166 935 KGVLSDILKCL--GDNKKHMRECTLTVLDAWLAAVHL--DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FP 1008 (1974)
Q Consensus 935 k~l~~~il~~l--~D~K~~vR~aa~~alda~~~~~gl--~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~--~~ 1008 (1974)
..++|.++..| .|....+|++++.|+...+..+|- ...++.+...|...-.+...|...+.-+..-...... ..
T Consensus 566 ~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~ 645 (1230)
T 1u6g_C 566 KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLR 645 (1230)
T ss_dssp HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchH
Confidence 99999999999 888999999999999999999873 3334444444432111334577766555543322111 11
Q ss_pred c-hhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCH----HHHHHHhhccCch-------hHHHHHHHHHhccCCCCC
Q 000166 1009 D-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ----ETIEKNLKDIQGP-------ALALILERIKLNGASQVS 1076 (1974)
Q Consensus 1009 ~-~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~----~~~~~~~~~Lk~~-------~~~~i~~~l~k~~~~~~~ 1076 (1974)
. ...++..+...+.|.+..+|.+|-.+|..++...|. +.+.+.+..+-|. ....+..++..--...
T Consensus 646 ~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~-- 723 (1230)
T 1u6g_C 646 PVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY-- 723 (1230)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhC--
Confidence 2 233444577789999999999999999999999874 5555555544222 2223333333321000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcc-cCC---CChHHH-Hhhhhcccc
Q 000166 1077 MGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLN-VKD---SNKEDR-ERMVVRRFK 1151 (1974)
Q Consensus 1077 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~K~~R-~~~~~~kw~ 1151 (1974)
+. ..... .+. -. ..++. +.. .+..-+ .-.......
T Consensus 724 --~~-------------~~~~~---------------~~~--------~l--~~~~~~l~~~~~~~~~~~~l~~~~~~l~ 763 (1230)
T 1u6g_C 724 --PS-------------SLSKI---------------SGS--------IL--NELIGLVRSPLLQGGALSAMLDFFQALV 763 (1230)
T ss_dssp --GG-------------GGGGT---------------TTT--------TH--HHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred --ch-------------hHHHh---------------HHh--------HH--HHHHHHHcCcccchHHHHHHHHHHHHHH
Confidence 00 00000 000 00 00000 000 000000 000000000
Q ss_pred ccCCC----hhHHHHH----------------HHHHHHhhhHH----------HHHhhc----c--cCHH-HHH--HHHH
Q 000166 1152 FEDPR----IEQIQEL----------------ENDMMKYFRED----------LHRRLL----S--TDFK-KQV--DGLE 1192 (1974)
Q Consensus 1152 f~~pr----~e~ve~L----------------~~q~~~~~~~~----------l~~~Lf----~--~Dfk-~~l--~al~ 1192 (1974)
-..+. ++.++.| ......|+..- +...+. + .+.. .++ .++.
T Consensus 764 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 843 (1230)
T 1u6g_C 764 VTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLG 843 (1230)
T ss_dssp TTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 01111 1222222 11111111110 000000 0 0111 111 1111
Q ss_pred HHHHh--cCCChhhhhHhHHHHHHHHHHhccccchHHHHHH-----------h-hhhHHHHHHHHhc-------------
Q 000166 1193 MLQKA--LPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKV-----------L-EFLPELFDTLRDE------------- 1245 (1974)
Q Consensus 1193 ~l~~~--l~~~~~~~i~~lDlllkw~tlr~~dtN~~vl~k~-----------L-e~l~~l~~~l~~~------------- 1245 (1974)
.+-.. +... + | ++.-+.--|.++|..|-... + .|+..++..+...
T Consensus 844 ~~g~~~~~~~~-~------~-l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e 915 (1230)
T 1u6g_C 844 EVGHHIDLSGQ-L------E-LKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKE 915 (1230)
T ss_dssp HHHHHSCCCSC-T------H-HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred HhcccCCCccc-c------c-HHHHHHHHhCCCCHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 11111 1100 0 1 11222223445555442211 0 1333333333221
Q ss_pred -----CCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHH
Q 000166 1246 -----GYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLID 1320 (1974)
Q Consensus 1246 -----~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~EcL~el~~li~ 1320 (1974)
+-.....-+..++|.|+..+|+.-+.+|..+-+++-.++.+.| ..++|.|.+.+++.|+-+|.-|+.-+.+++.
T Consensus 916 ~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~-~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~ 994 (1230)
T 1u6g_C 916 IISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETLLPRLKGYLISGSSYARSSVVTAVKFTIS 994 (1230)
T ss_dssp HHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCC
T ss_pred HHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 1111122346688999999998888899999999999999976 6799999999999999999999888877776
Q ss_pred hhcCccccccch-HHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhcc
Q 000166 1321 HHGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (1974)
Q Consensus 1321 ~~G~~v~~~~Ka-l~~iA~~i~drD~~VR~AALn~l~~~Y~~~Gd~v~k~vg~ 1372 (1974)
..|-.+..-.+. ++.+-++++|.|+.||.+|+.+|..+-...|+-++.+++.
T Consensus 995 ~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~ 1047 (1230)
T 1u6g_C 995 DHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1047 (1230)
T ss_dssp SSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHH
T ss_pred cCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHH
Confidence 554332111122 3556678899999999999999999877777665555433
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-20 Score=239.92 Aligned_cols=554 Identities=18% Similarity=0.182 Sum_probs=373.9
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCC-CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~-~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
.+.+.+.+.+|+.|..|+..|..+... +.+ ....+|+..|...+ |.+..|...++++++.++..++.. .|...+
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~--~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~l 88 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHCL 88 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHH--hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHHH
Confidence 688899999999999999999876531 111 12457888888777 667788888999998887766542 477888
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh----hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD----VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~----~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~ 443 (1974)
+|.+..-+.+....||+++.++|..++.. .+-+. +++-+....++.++.+|...+..+.......+... .
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~--~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~----~ 162 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV----K 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----H
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH----H
Confidence 88887777899999999999999999875 34332 33444455578889999999988887776655332 3
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000166 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1974)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1974)
..++|.+..+++|.++.||.+|+.+|+.+...+|.+...+ .+= ..+.+.+...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~---~l~----~~l~~~~~d~-------------------- 215 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKS---EII----PMFSNLASDE-------------------- 215 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHH---THH----HHHHHHHTCS--------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHH---HHH----HHHHHHhcCC--------------------
Confidence 6788999999999999999999999999999999643211 100 0112222110
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000166 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1974)
Q Consensus 524 ~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~ 603 (1974)
...++..+....+. - . ..++.++. .+.+-
T Consensus 216 -------~~~vr~~a~~~l~~-----------------------------l---~--------~~~~~~~~----~~~~~ 244 (588)
T 1b3u_A 216 -------QDSVRLLAVEACVN-----------------------------I---A--------QLLPQEDL----EALVM 244 (588)
T ss_dssp -------CHHHHTTHHHHHHH-----------------------------H---H--------HHSCHHHH----HHHTH
T ss_pred -------cHHHHHHHHHHHHH-----------------------------H---H--------HhCCHHHH----HHHHH
Confidence 00011110000000 0 0 00011221 12334
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchh
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~ 683 (1974)
+-+...+.+.+|..|..+.+.+.......+.. ...+.++..+.. ..+|.+.
T Consensus 245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~--~l~d~~~-------------------------- 295 (588)
T 1b3u_A 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPE-ITKTDLVPAFQN--LMKDCEA-------------------------- 295 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH-HHHHTHHHHHHH--HHTCSSH--------------------------
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc-cchhHHHHHHHH--HhCCCcH--------------------------
Confidence 45667778888999988888777555443211 001111211111 1233333
Q ss_pred hhccchhhccccchhhhHHHHHHHHHHHhhchH--------hHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccc
Q 000166 684 LCLLGISERVADIKTRAHAMKCLTTFSEAVGPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 755 (1974)
Q Consensus 684 ~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~--------~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~ 755 (1974)
-+|..+..+|-.+++..++. .++..+... .+.++|+|+..++.++..+..-+|-.. -
T Consensus 296 -------------~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~-~ 360 (588)
T 1b3u_A 296 -------------EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN-T 360 (588)
T ss_dssp -------------HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH-H
T ss_pred -------------HHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhHhH-H
Confidence 34555555555555554433 223333333 467889999999988888887777532 2
Q ss_pred hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcC
Q 000166 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (1974)
Q Consensus 756 ~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~ 835 (1974)
...++..+... |.+.++.||.+|+..++.+-..+|+.. +.
T Consensus 361 ~~~l~p~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~------------------------------------- 400 (588)
T 1b3u_A 361 IEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--LS------------------------------------- 400 (588)
T ss_dssp HHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH--HH-------------------------------------
T ss_pred HHHHHHHHHHH-hCCCchHHHHHHHHHHHHHHHhcCHHH--HH-------------------------------------
Confidence 34566667776 888999999999998888887766421 00
Q ss_pred CCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHH
Q 000166 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 915 (1974)
Q Consensus 836 ~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~a 915 (1974)
..+-+.+.+-+.|++|++|..+++.+..+...-.... ....+++.|...|.|.+..|...|
T Consensus 401 ----------------~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 401 ----------------QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp ----------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred ----------------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCCcHHHHHHH
Confidence 0122334455678899999999999999986432221 114688888889999999999999
Q ss_pred HHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchh----hhHHHHHHHhcccCCcchHH
Q 000166 916 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----MVPYVTTALTDAKLGAEGRK 991 (1974)
Q Consensus 916 l~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~----~~~~i~~~L~~~~~~p~~R~ 991 (1974)
+.+++.++..+|+.+ +...++|.++..+.|....+|.+++.++..+...+|.+. +++.+...|.++ +++.|.
T Consensus 462 ~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~--~~~Vr~ 537 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANVRF 537 (588)
T ss_dssp HHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHHHH
T ss_pred HHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC--CchHHH
Confidence 999999999999865 466789999999999999999999999999999988654 455555555554 588999
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhhHh-hhccCCChHHHHHHHHHHHHH
Q 000166 992 DLFDWLSKQLTGLSGFPDAAHLLKPAS-IAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 992 e~l~wL~~~l~~~~~~~~~~~~~~p~~-~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
.++..|.+....... ......+.|++ ..++|++.+||.+|..+|..+
T Consensus 538 ~a~~~l~~l~~~~~~-~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 538 NVAKSLQKIGPILDN-STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhch-hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 999888877655432 11224555644 456999999999999998754
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-18 Score=227.98 Aligned_cols=752 Identities=13% Similarity=0.153 Sum_probs=472.3
Q ss_pred CCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHhh
Q 000166 22 HKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAK 101 (1974)
Q Consensus 22 hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~~~~v~~~lveK 101 (1974)
+-+--.|.+|.+.|.+.- .+|.|..|...+-.-..+.+..+...|.-.+..++...-..........+...+-.
T Consensus 24 s~d~~~r~~Ae~~L~~~~------~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~ 97 (852)
T 4fdd_A 24 SPDTTIQRTVQQKLEQLN------QYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN 97 (852)
T ss_dssp CSCHHHHHHHHHHHHHHT------TSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHH------hCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 345566666666665331 23444433221111124556666665555554444321110010111122222222
Q ss_pred hhc-CChhhHHHHHHHHHHHHhhchh---hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCc------cChhHHHh
Q 000166 102 CLT-GRPKTVEKAQAVFMLWVELEAV---DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI------IPPKRILK 171 (1974)
Q Consensus 102 ~L~-~r~ktk~~a~e~~l~~vE~e~~---~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kv------v~~K~ilk 171 (1974)
+|+ ..+..+..+.+++-..+..+.. ..++..|...+.+.++.+.-+++.++..+.+.++... -....++.
T Consensus 98 ~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~ 177 (852)
T 4fdd_A 98 NIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIP 177 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHH
Confidence 343 2345555555555555544322 2456666666666666666666666666666665421 01344555
Q ss_pred hchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcc
Q 000166 172 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELIS 251 (1974)
Q Consensus 172 ~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~ 251 (1974)
.+-.+|.+.+..||.+|...+..+....+ ..+...
T Consensus 178 ~l~~~l~~~~~~vR~~A~~aL~~~~~~~~-----~~~~~~---------------------------------------- 212 (852)
T 4fdd_A 178 KFLQFFKHSSPKIRSHAVACVNQFIISRT-----QALMLH---------------------------------------- 212 (852)
T ss_dssp HHTTTTTCSSHHHHHHHHHHHHTTTTTTC-----HHHHTS----------------------------------------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccc-----HHHHHH----------------------------------------
Confidence 55556666666666666554332111110 000000
Q ss_pred cCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHH
Q 000166 252 EDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTL 330 (1974)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~L 330 (1974)
++ ++ + ..+...+.+..+..|+.+++.|..+.. .++.-.....+++..+
T Consensus 213 ------------------------~~--~~---l--~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l 261 (852)
T 4fdd_A 213 ------------------------ID--SF---I--ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYM 261 (852)
T ss_dssp ------------------------HH--HH---H--HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHH
T ss_pred ------------------------HH--HH---H--HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 00 01 1 124444566778899999999988765 3433333456889999
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHH--hccccccchhhhHHHHHHHh-----------cc-----------CCHHHHHHH
Q 000166 331 KKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRFLLPVLLEKL-----------KE-----------KKPTVAESL 386 (1974)
Q Consensus 331 kk~l~DsNv~vv~~A~~~i~~LA~g--Lr~~F~~y~~~~l~~lLekl-----------KE-----------KK~~V~eA~ 386 (1974)
-+.+.|.+-.|...|++++..+++. .++.+.+|...++|.++..+ .| ..-+||.++
T Consensus 262 ~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a 341 (852)
T 4fdd_A 262 LQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCS 341 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHH
T ss_pred HHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHH
Confidence 9999998999999999999999873 45557889999999999998 45 566899999
Q ss_pred HHHHHHHHHhc-CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHH
Q 000166 387 TQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAA 465 (1974)
Q Consensus 387 ~~aLda~~~~~-~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA 465 (1974)
..+|+.++... ..-+..+++-+...+.+.+|.+|..++..|....+.... .+.+.+..++|.++.+++|+++.||.+|
T Consensus 342 ~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~~Vr~~a 420 (852)
T 4fdd_A 342 AAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKALVRSIT 420 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999998751 111334556666778899999999999999877665543 3345668899999999999999999999
Q ss_pred HHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCC
Q 000166 466 FSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGK 545 (1974)
Q Consensus 466 ~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 545 (1974)
+.+++.+...++......+
T Consensus 421 ~~~l~~l~~~~~~~~~~~~------------------------------------------------------------- 439 (852)
T 4fdd_A 421 CWTLSRYAHWVVSQPPDTY------------------------------------------------------------- 439 (852)
T ss_dssp HHHHHHTHHHHHHSCTTTT-------------------------------------------------------------
T ss_pred HHHHHHHHHHhccchHHHH-------------------------------------------------------------
Confidence 9999976655432110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHH
Q 000166 546 RPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSL 625 (1974)
Q Consensus 546 ~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l 625 (1974)
.+++- +.++..|.+.+|..|-+|...+
T Consensus 440 ---------------------------------------------~~~ll--------~~L~~~L~d~~~~vr~~a~~aL 466 (852)
T 4fdd_A 440 ---------------------------------------------LKPLM--------TELLKRILDSNKRVQEAACSAF 466 (852)
T ss_dssp ---------------------------------------------HHHHH--------HHHHHHHTCSSHHHHHHHHHHH
T ss_pred ---------------------------------------------HHHHH--------HHHHHHHhCCCHHHHHHHHHHH
Confidence 01111 2344556666777787777777
Q ss_pred HHHHHhh-hccchhHHHHHHHHHhc-CCCccchHHHHHHHHHHHHHHHHhcC-CCC-ccchhhhccchhhcc---cc--c
Q 000166 626 RQQVEAV-QNLDQSVEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATAT-KFP-KKCVVLCLLGISERV---AD--I 696 (1974)
Q Consensus 626 ~~~v~~~-~~~~~~~~~Lvr~l~~~-PgwkesNfqV~~k~leil~~la~~~~-~fs-~~~~~~~l~~lveKl---gD--~ 696 (1974)
...++.. .......+-++..|... ..+...|. ...++++..++...+ .+. ......+++.++++. .| .
T Consensus 467 ~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~---~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~ 543 (852)
T 4fdd_A 467 ATLEEEACTELVPYLAYILDTLVFAFSKYQHKNL---LILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDK 543 (852)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCT
T ss_pred HHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccH
Confidence 7666552 22233333333322211 11233333 345566666654332 222 234456677776432 22 3
Q ss_pred hhhhHHHHHHHHHHHhhchHhH--HHHHHH----hhh----------------hcCChhhHHHHHHHHHHHHHHhccCcc
Q 000166 697 KTRAHAMKCLTTFSEAVGPGFI--FERLYK----IMK----------------DHKNPKVLSEGILWMVSAVEDFGVSHL 754 (1974)
Q Consensus 697 K~r~~a~e~L~~~aE~~~p~~V--~~~l~~----~~~----------------~~KnPKv~ae~l~wl~~ai~eFG~~~l 754 (1974)
..+ .+.+++..++...+..|+ +..+++ .+. +.....++..++..++.+++.+|-...
T Consensus 544 ~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~ 622 (852)
T 4fdd_A 544 DLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 622 (852)
T ss_dssp THH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHH
Confidence 343 688999999998887664 333333 221 112456788889999999999985433
Q ss_pred ch---HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 000166 755 KL---KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (1974)
Q Consensus 755 ~~---K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~ 831 (1974)
+. ..++..+..+ +.+.++.||.+|..+++.+-++.|..+..|+..+-|.+.
T Consensus 623 ~~~~~~~~~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~------------------------- 676 (852)
T 4fdd_A 623 QLVARSNILTLMYQC-MQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG------------------------- 676 (852)
T ss_dssp HHHHTCCHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH-------------------------
T ss_pred HHhcCCcHHHHHHHH-hCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------------------
Confidence 22 3677888886 999999999999999999999999999988866544443
Q ss_pred cCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccch--hH
Q 000166 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NK 909 (1974)
Q Consensus 832 ~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~Ds--Nk 909 (1974)
+.+++..+.+|+.|...+..|+......++|-. ..++..|-..|.+. ++
T Consensus 677 ----------------------------~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~-~~il~~L~~~l~~~~~~~ 727 (852)
T 4fdd_A 677 ----------------------------TNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPK 727 (852)
T ss_dssp ----------------------------HTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGT-HHHHHHHHHHHTCSSCCH
T ss_pred ----------------------------HHcCccchHHHHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHhCCCCCCc
Confidence 333445678899999999999876555688875 88888888888654 67
Q ss_pred hHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchh-HHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcc
Q 000166 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH-MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE 988 (1974)
Q Consensus 910 ~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~-vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~ 988 (1974)
.+...|..++|+++...+..+.+|...+++.++..|.+.... .|+.+..++..++..-+ ..+++
T Consensus 728 ~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p-~~~~~-------------- 792 (852)
T 4fdd_A 728 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP-SGVIQ-------------- 792 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCG-GGTGG--------------
T ss_pred hHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhCh-HhHHH--------------
Confidence 899999999999999943445689999999999999764444 68888888888766532 11111
Q ss_pred hHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHH
Q 000166 989 GRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065 (1974)
Q Consensus 989 ~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~ 1065 (1974)
.+.|+-.. ++.-.+..+|.+..=..+|-.+=.++|.+.....+..+.|..+..+.+
T Consensus 793 ----~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 793 ----DFIFFCDA-----------------VASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp ----GHHHHHHH-----------------HHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred ----HHHHHHHH-----------------HHhcCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHH
Confidence 11111111 112234467777777788877777888888888888888777666554
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-18 Score=226.15 Aligned_cols=704 Identities=13% Similarity=0.143 Sum_probs=456.5
Q ss_pred cCCCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCCC-CHHHHHHHHHHHHHHHHHcChh---hhhhhhHHH
Q 000166 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS-NAPVQDKALDALIAYLKAADAD---AGRYAKEVC 95 (1974)
Q Consensus 20 L~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~Ds-N~~aqEk~leal~~~l~~a~~~---~~~~~~~v~ 95 (1974)
|.+.+=+.|..+.+-+...+...... ..|..+.+.+-..+.+. |..+.+.++.++..+++..+.. .......++
T Consensus 104 l~~~~~~vr~~~~~~l~~i~~~~~p~--~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll 181 (861)
T 2bpt_A 104 LVSIEPRIANAAAQLIAAIADIELPH--GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181 (861)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGG--TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHH
T ss_pred HCCCchHHHHHHHHHHHHHHHhhCcc--cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Confidence 45556666777766666655432110 02333333344556777 9999999999998888764432 123444555
Q ss_pred HHHHhhhhc-C--ChhhHHHHHHHHHHHHhh-c-h------hhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCcc
Q 000166 96 DAIAAKCLT-G--RPKTVEKAQAVFMLWVEL-E-A------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKII 164 (1974)
Q Consensus 96 ~~lveK~L~-~--r~ktk~~a~e~~l~~vE~-e-~------~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv 164 (1974)
+.+ .+++. . .+..+..|.+|+..+++. + . ...+++.+...+.+..+++...++.++..++..++....
T Consensus 182 ~~l-~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 260 (861)
T 2bpt_A 182 IAI-VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260 (861)
T ss_dssp HHH-HHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCH
T ss_pred HHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 34554 3 567888899998876653 1 1 124677777788889999999999999999999985433
Q ss_pred C-hh-HHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcc---hhhh
Q 000166 165 P-PK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR---KIRA 239 (1974)
Q Consensus 165 ~-~K-~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R---~~Rs 239 (1974)
+ +. .|+..+-..+.+.|..||..+..++..+...... . . .+. . +. + ..|.+ +++.
T Consensus 261 ~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~-~-~~~-----------~--~~--~-~~~~~~~~~~~~ 320 (861)
T 2bpt_A 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID--I-A-YEL-----------A--QF--P-QSPLQSYNFALS 320 (861)
T ss_dssp HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH--H-H-HHH-----------H--HC--T-TCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--h-h-hhh-----------h--hc--c-CCchhhHHHHHH
Confidence 2 34 6677777778899999999999988777665421 0 0 000 0 00 0 11111 1110
Q ss_pred HHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCCCC
Q 000166 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIA 319 (1974)
Q Consensus 240 ~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~ 319 (1974)
.-. .-....-..-... + + |. .+..|..|+.+.+.|..+...-.
T Consensus 321 ~~~--~il~~ll~~l~~~-------~--~--d~----------------------~d~~~~~r~~a~~~L~~l~~~~~-- 363 (861)
T 2bpt_A 321 SIK--DVVPNLLNLLTRQ-------N--E--DP----------------------EDDDWNVSMSAGACLQLFAQNCG-- 363 (861)
T ss_dssp HHH--HHHHHHHHHTTCC-------C--C--C-----------------------CCCCCHHHHHHHHHHHHHHHHHG--
T ss_pred HHH--HHHHHHHHHHHhc-------c--c--cc----------------------ccccCcHHHHHHHHHHHHHHHcc--
Confidence 000 0000000000000 0 0 00 01348999999999887764211
Q ss_pred CCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc-cccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-
Q 000166 320 PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG- 397 (1974)
Q Consensus 320 ~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr-~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~- 397 (1974)
..-...++..+...+.|.|..+-..|+.+++.|+.+.+ ..+.+|...++|.++..++|..+.||.++..+|-.++...
T Consensus 364 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 364 NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 22356888999999999999999999999999999987 7788999999999999999999999999988888887651
Q ss_pred -----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC---hhHHhHhhhhhHHHHHhhhC--CCCHHHHHHHHH
Q 000166 398 -----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLN--DGTPEVRDAAFS 467 (1974)
Q Consensus 398 -----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~---~~~~~~~~k~~~~~l~k~l~--Ds~~~VR~aA~~ 467 (1974)
...+..+++.+...+++. |.+|..++.-|....+... +..+.+.+..+++.++++++ |.++.||.++++
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 123677888888889876 9999988877777766543 23444666888999999998 555899999999
Q ss_pred HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCC
Q 000166 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (1974)
Q Consensus 468 ~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p 547 (1974)
+++.+....|++ +.+++..+-+.-...+...+.-.
T Consensus 523 al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~-------------------------------------------- 557 (861)
T 2bpt_A 523 ALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVD-------------------------------------------- 557 (861)
T ss_dssp HHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSC--------------------------------------------
T ss_pred HHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhh--------------------------------------------
Confidence 999999999975 55555543332222222211000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHH
Q 000166 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627 (1974)
Q Consensus 548 ~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~ 627 (1974)
..-.+.++-+ .....|..+++
T Consensus 558 --------------------------------------~~i~~~~~~~-----------------~~~~~~~~~~~---- 578 (861)
T 2bpt_A 558 --------------------------------------ENQLTLEDAQ-----------------SLQELQSNILT---- 578 (861)
T ss_dssp --------------------------------------GGGCCHHHHH-----------------HHHHHHHHHHH----
T ss_pred --------------------------------------cccCChhhHH-----------------HHHHHHHHHHH----
Confidence 0000100000 00011111111
Q ss_pred HHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHH
Q 000166 628 QVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLT 707 (1974)
Q Consensus 628 ~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~ 707 (1974)
. ...+++.+.. .+. ......+..+..+.... . .| .+++.+..++.
T Consensus 579 ~----------l~~l~~~~~~--~~~----~~~~~l~~~l~~~l~~~-~-----------------~~-~v~~~~~~~l~ 623 (861)
T 2bpt_A 579 V----------LAAVIRKSPS--SVE----PVADMLMGLFFRLLEKK-D-----------------SA-FIEDDVFYAIS 623 (861)
T ss_dssp H----------HHHHHHHCGG--GTG----GGHHHHHHHHHHHHHST-T-----------------GG-GTHHHHHHHHH
T ss_pred H----------HHHHHHHhhh--hhH----HHHHHHHHHHHHHHccC-C-----------------CC-cHHHHHHHHHH
Confidence 1 1112222211 111 11222333222222210 0 01 56777888888
Q ss_pred HHHHhhchHhH--HH----HHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCCcc--HHHHHH
Q 000166 708 TFSEAVGPGFI--FE----RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSA--AATRNA 778 (1974)
Q Consensus 708 ~~aE~~~p~~V--~~----~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L~~sN--~~VR~a 778 (1974)
.+++..+..|. +. .++..+ +++++.++..++..+..+.+.+|-...+ +..++..+-.. |++.| +.||..
T Consensus 624 ~l~~~~~~~~~~~l~~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~vr~~ 701 (861)
T 2bpt_A 624 ALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM-ISNPNARRELKPA 701 (861)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH-HHCTTCCTTHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHH-hCCccccHhhhHH
Confidence 88887776543 33 444443 6799999999999999999998853211 34566666665 77766 999999
Q ss_pred HHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHH
Q 000166 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 858 (1974)
Q Consensus 779 Ai~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l 858 (1974)
++.+++.+-..+|+.+.+|+..+-|.++..++. .+ + + + .++.
T Consensus 702 ~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~----~~--~---~----------------~-------------d~d~ 743 (861)
T 2bpt_A 702 VLSVFGDIASNIGADFIPYLNDIMALCVAAQNT----KP--E---N----------------G-------------TLEA 743 (861)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC----CC--S---S----------------S-------------SHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc----CC--C---C----------------C-------------ChHH
Confidence 999999999999999999998888877765531 00 0 0 0 0111
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHcc---cCCCCCCccchHHHHhhhccch----hHhHHHHHHHHHHHHHHhc-ChhH
Q 000166 859 VKSLESPDWKVRLESIEAVNKILEEAN---KRIQPAGTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAM-GPAV 930 (1974)
Q Consensus 859 ~~~l~d~~WK~RkEaLe~v~~il~~an---krI~p~~~geL~~aLk~Rl~Ds----Nk~lv~~al~ii~~lA~am-G~~~ 930 (1974)
.+-.+++|..+++.+..|+...+ ..+.|-. .+++..|...+.|. +..+...|+.+++.++.++ |+.|
T Consensus 744 ----~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~-~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~ 818 (861)
T 2bpt_A 744 ----LDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYV-GTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSI 818 (861)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGH-HHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH-HHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchH
Confidence 01136899999999999997543 3355543 77888888888885 8899999999999999999 9999
Q ss_pred Hhhhh-hhhHHHHHHhcc---CchhHHHHHHHHHHHHHHhcc
Q 000166 931 EKSSK-GVLSDILKCLGD---NKKHMRECTLTVLDAWLAAVH 968 (1974)
Q Consensus 931 ~k~~k-~l~~~il~~l~D---~K~~vR~aa~~alda~~~~~g 968 (1974)
.+|.. .++|.+++.|.. ....+++.+.=|+.....+++
T Consensus 819 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~~ 860 (861)
T 2bpt_A 819 KQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQLS 860 (861)
T ss_dssp GGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999 899999999883 556678888777776655443
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-17 Score=222.10 Aligned_cols=726 Identities=11% Similarity=0.098 Sum_probs=463.9
Q ss_pred CCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCC-CCHHHHHHHHHHHHHHHHHcCh----------h--hh
Q 000166 22 HKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADA----------D--AG 88 (1974)
Q Consensus 22 hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~D-sN~~aqEk~leal~~~l~~a~~----------~--~~ 88 (1974)
+.+=-.|..|-+.|.+.... ..|.|..+ ++.-+..+ .+..+...|...+..++..... . ..
T Consensus 16 s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~--l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~ 89 (861)
T 2bpt_A 16 SPDQNIRLTSETQLKKLSND----NFLQFAGL--SSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVS 89 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHH----CHHHHHHH--HHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHHHHhh----CHHHHHHH--HHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCC
Confidence 34456788888888764321 12344322 22222222 3566666655555544321100 0 00
Q ss_pred -hhhhHHHHHHHhhhhc-CChhhHHHHHHHHHHHHhhchh----hhHHHHHHHHhhcc-CchhHHHHHHHHHHHHHhhCC
Q 000166 89 -RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK-VAKAVVPAIDVMFQALSEFGA 161 (1974)
Q Consensus 89 -~~~~~v~~~lveK~L~-~r~ktk~~a~e~~l~~vE~e~~----~~v~e~ll~~~~~K-~PKvvaaai~~l~~~l~~FG~ 161 (1974)
.....+-..+++ +|. ..+..+..+..++-..+..+-+ ..++..|...+.+. +|.+.-.++.++..+.++++.
T Consensus 90 ~~~~~~ik~~ll~-~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~ 168 (861)
T 2bpt_A 90 PEAKNQIKTNALT-ALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADP 168 (861)
T ss_dssp HHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCh
Confidence 011122233444 333 3455566665665554444322 35677777777776 888888888888888888875
Q ss_pred Cc--c--ChhHHHhhchhhhcCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcc
Q 000166 162 KI--I--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235 (1974)
Q Consensus 162 kv--v--~~K~ilk~l~~lf~h~--dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R 235 (1974)
.. + ....|+..+-..+.+. +..||..+.+.+..+..|++. .+ +. .....
T Consensus 169 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-----~~-~~--~~~~~----------------- 223 (861)
T 2bpt_A 169 QSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN-----NM-ER--EGERN----------------- 223 (861)
T ss_dssp TSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH-----HH-TS--HHHHH-----------------
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH-----Hc-cC--hhHHH-----------------
Confidence 42 1 2455666666677776 788888887776665544431 11 00 00000
Q ss_pred hhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-
Q 000166 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS- 314 (1974)
Q Consensus 236 ~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~- 314 (1974)
.++ ..+.+.+.+..|+.|+.+++.|..+..
T Consensus 224 --------------------------------------------~ll-----~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 224 --------------------------------------------YLM-----QVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp --------------------------------------------HHH-----HHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------HHH-----HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 000 012233456779999999999988764
Q ss_pred cCCCCCCChh-HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc----------------cc-cccchhhhHHHHHHHhc
Q 000166 315 TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR----------------TH-FSGSSRFLLPVLLEKLK 376 (1974)
Q Consensus 315 ~pKi~~~dy~-dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr----------------~~-F~~y~~~~l~~lLeklK 376 (1974)
.++.-...+. +++..+-..+.|.+-.|...|++++..+++... ++ +.+|...++|.+++.++
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~ 334 (861)
T 2bpt_A 255 YYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLT 334 (861)
T ss_dssp HGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3332222234 677888888889999999999999999998752 11 34567889999999998
Q ss_pred c-------CCHHHHHHHHHHHHHHHHh-cCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHH
Q 000166 377 E-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1974)
Q Consensus 377 E-------KK~~V~eA~~~aLda~~~~-~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~ 448 (1974)
+ -..++|.++..+|+.++.. +...+..+++.+...+.+.++.+|..++..|....+...+..+.+.+..++|
T Consensus 335 ~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~ 414 (861)
T 2bpt_A 335 RQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALP 414 (861)
T ss_dssp CCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred hcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 3568999999999999875 1112445666677778899999999998888877655443444566788999
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH-HHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCC
Q 000166 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE 527 (1974)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l-~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1974)
.++..+.|.++.||.+++.+++.+...+|.... .++
T Consensus 415 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~------------------------------------------- 451 (861)
T 2bpt_A 415 SILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH------------------------------------------- 451 (861)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-------------------------------------------
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-------------------------------------------
Confidence 999999999999999999999998887764200 000
Q ss_pred CcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHH
Q 000166 528 ASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607 (1974)
Q Consensus 528 ~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~ 607 (1974)
.+++- +.++
T Consensus 452 ---------------------------------------------------------------~~~~l--------~~l~ 460 (861)
T 2bpt_A 452 ---------------------------------------------------------------LPGVV--------QACL 460 (861)
T ss_dssp ---------------------------------------------------------------HHHHH--------HHHH
T ss_pred ---------------------------------------------------------------HHHHH--------HHHH
Confidence 00111 1122
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhh-----ccchhHH----HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCC
Q 000166 608 GQLKSAVWKERLEAISSLRQQVEAVQ-----NLDQSVE----ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFP 678 (1974)
Q Consensus 608 ~~L~s~~WK~RL~a~E~l~~~v~~~~-----~~~~~~~----~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs 678 (1974)
..|.+. +..|..+...+...++... ......+ .|++.+.. .|.+..|....++.+..++...+.-.
T Consensus 461 ~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~----~d~~~~vr~~a~~al~~l~~~~~~~~ 535 (861)
T 2bpt_A 461 IGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR----IDNEFNARASAFSALTTMVEYATDTV 535 (861)
T ss_dssp HHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC----SCCGGGHHHHHHHHHHHHHHHCCGGG
T ss_pred HHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhC----cCcchHHHHHHHHHHHHHHHHcchhh
Confidence 333332 5555555555555444422 1122222 33333321 24556788888999998888654333
Q ss_pred ccchhhhccchhhcccc-----------------chhhhHHHHHHHHHHHhhchHh------HHHHHHHhhhhcCCh-hh
Q 000166 679 KKCVVLCLLGISERVAD-----------------IKTRAHAMKCLTTFSEAVGPGF------IFERLYKIMKDHKNP-KV 734 (1974)
Q Consensus 679 ~~~~~~~l~~lveKlgD-----------------~K~r~~a~e~L~~~aE~~~p~~------V~~~l~~~~~~~KnP-Kv 734 (1974)
...+..+++.+++.+.+ ..++..+.++|..+++..+..+ ++..++.. .+..++ .+
T Consensus 536 ~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~v 614 (861)
T 2bpt_A 536 AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRL-LEKKDSAFI 614 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHH-HHSTTGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HccCCCCcH
Confidence 33344566666666653 2356788889999999887643 33334444 356667 89
Q ss_pred HHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHH
Q 000166 735 LSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY 813 (1974)
Q Consensus 735 ~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF 813 (1974)
+.+++.+++.+...+|....+ +..+++.+... |.+.++.||..|+.+++.+-+.+|+.+.+|+..+=|.++..++.+
T Consensus 615 ~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~- 692 (861)
T 2bpt_A 615 EDDVFYAISALAASLGKGFEKYLETFSPYLLKA-LNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP- 692 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH-HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc-
Confidence 999999999999988865332 46788888886 888999999999999999999999988888866666555444310
Q ss_pred hcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc
Q 000166 814 EKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT 893 (1974)
Q Consensus 814 ~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~ 893 (1974)
+.++.+|..++..+..|+...+..+.|-.
T Consensus 693 --------------------------------------------------~~~~~vr~~~~~~l~~l~~~~~~~~~~~l- 721 (861)
T 2bpt_A 693 --------------------------------------------------NARRELKPAVLSVFGDIASNIGADFIPYL- 721 (861)
T ss_dssp --------------------------------------------------TCCTTHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred --------------------------------------------------cccHhhhHHHHHHHHHHHHHhhhhHHHHH-
Confidence 01245678888888888865444444432
Q ss_pred cchHHHHhhhcc-----------chhHhHHHHHHHHHHHHHHhcC---hhHHhhhhhhhHHHHHHhccC----chhHHHH
Q 000166 894 GELFGGLRGRLY-----------DSNKNLVMATLITLGAVASAMG---PAVEKSSKGVLSDILKCLGDN----KKHMREC 955 (1974)
Q Consensus 894 geL~~aLk~Rl~-----------DsNk~lv~~al~ii~~lA~amG---~~~~k~~k~l~~~il~~l~D~----K~~vR~a 955 (1974)
..+++.|...+. |...++...++++++.++.++| ..|..|...+++.+...+.|. ...||.+
T Consensus 722 ~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~ 801 (861)
T 2bpt_A 722 NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRA 801 (861)
T ss_dssp HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 456666655554 2335677899999999999999 568889999999888888874 7899999
Q ss_pred HHHHHHHHHHhc-cch-------hhhHHHHHHHhcccCCcchHHHHHHHHHHHh
Q 000166 956 TLTVLDAWLAAV-HLD-------KMVPYVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1974)
Q Consensus 956 a~~alda~~~~~-gl~-------~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l 1001 (1974)
|..++..++... |-+ .+++.+...|........--.+.-.|..+.+
T Consensus 802 a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~ 855 (861)
T 2bpt_A 802 AVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQ 855 (861)
T ss_dssp HHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 999999999988 522 3344444444421111112356666665544
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-16 Score=213.67 Aligned_cols=619 Identities=14% Similarity=0.112 Sum_probs=413.5
Q ss_pred hhhhhhccC--ChHHHHHHHHHHHHhhhc--CCCCCCChhHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHhcccccc
Q 000166 289 GFWEGVKAT--KWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLRTHFSG 362 (1974)
Q Consensus 289 ~f~~~l~s~--KWkeRkEALe~L~~L~~~--pKi~~~dy~dL~~~Lkk~l~Ds--Nv~vv~~A~~~i~~LA~gLr~~F~~ 362 (1974)
.+...+.+. .+..|..+|+.|..+... +.........++..|...+.|. |..|-..|++|++.++..++.++..
T Consensus 132 ~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 211 (876)
T 1qgr_A 132 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK 211 (876)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667777 889999999998887653 1111233567888899999865 7889999999999999887776654
Q ss_pred ch--hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hh-hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000166 363 SS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1974)
Q Consensus 363 y~--~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~----l~-~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~ 435 (1974)
+. ..+++.+.+.+.+....||.++.++|..++....-. +. .+++-+...+++..+.+|..++.|+..+.+...
T Consensus 212 ~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~ 291 (876)
T 1qgr_A 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 291 (876)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 32 247888888888889999999999999998751111 33 667777777889999999999999887765320
Q ss_pred --------------------hhHHhHhhhhhHHHHHhhhC-------CCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000166 436 --------------------KAAVLKVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1974)
Q Consensus 436 --------------------~~~~~~~~k~~~~~l~k~l~-------Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1974)
.......++.++|.++..+. |.+..+|.+|..+|+.+...+|+..+..++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~-- 369 (876)
T 1qgr_A 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP-- 369 (876)
T ss_dssp HHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHH--
T ss_pred hHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHH--
Confidence 01111234678888888873 4567899999999999999999644332222
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000166 489 DDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDG 568 (1974)
Q Consensus 489 d~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~ 568 (1974)
.+.+.+... . ..++..+....+.-
T Consensus 370 ------~l~~~l~~~---------~------------------~~~r~~a~~~l~~i----------------------- 393 (876)
T 1qgr_A 370 ------FIKEHIKNP---------D------------------WRYRDAAVMAFGCI----------------------- 393 (876)
T ss_dssp ------HHHHHTTCS---------S------------------HHHHHHHHHHHHHT-----------------------
T ss_pred ------HHHHHccCC---------C------------------hHHHHHHHHHHHHH-----------------------
Confidence 222222110 0 00111110000000
Q ss_pred CCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHH
Q 000166 569 SGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEILVRL 645 (1974)
Q Consensus 569 ~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~---~~~~~~~Lvr~ 645 (1974)
. ....++.+...+..++ +.++..|.+.+|..|..|...+....+.... .....+-++..
T Consensus 394 ---------~--------~~~~~~~~~~~~~~~l-~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~ 455 (876)
T 1qgr_A 394 ---------L--------EGPEPSQLKPLVIQAM-PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 455 (876)
T ss_dssp ---------S--------SSSCHHHHHHHHHHHH-HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHH
T ss_pred ---------H--------cCCCHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHH
Confidence 0 0012233433333333 3567888999999999999988877766432 12233444443
Q ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHhcC--------------CCCccchhhhccchhhccccc-----hhhhHHHHHH
Q 000166 646 VCMLPGWSEKNVQVQQQVIEVINYLAATAT--------------KFPKKCVVLCLLGISERVADI-----KTRAHAMKCL 706 (1974)
Q Consensus 646 l~~~PgwkesNfqV~~k~leil~~la~~~~--------------~fs~~~~~~~l~~lveKlgD~-----K~r~~a~e~L 706 (1974)
+.. +..| +..|.......+..++..+. ..-...+..+++.++..+.+. .+|..+.++|
T Consensus 456 l~~--~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l 532 (876)
T 1qgr_A 456 LIE--GLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESL 532 (876)
T ss_dssp HHH--HTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHH
T ss_pred HHH--HHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHH
Confidence 332 2344 36777788888888876542 112234456667666666543 5678899999
Q ss_pred HHHHHhhchHh------HHHHHHHhhhh----------cCC----hhhHHHHHHHHHHHHHHhc-cCcc-chHhHHHHHh
Q 000166 707 TTFSEAVGPGF------IFERLYKIMKD----------HKN----PKVLSEGILWMVSAVEDFG-VSHL-KLKDLIDFCK 764 (1974)
Q Consensus 707 ~~~aE~~~p~~------V~~~l~~~~~~----------~Kn----PKv~ae~l~wl~~ai~eFG-~~~l-~~K~lI~~~k 764 (1974)
..++...+.++ ++..++..+.. ... |.++.-++.++..++..+| -... -+..+++.+-
T Consensus 533 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~ 612 (876)
T 1qgr_A 533 MEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLL 612 (876)
T ss_dssp HHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHH
Confidence 99998776432 22222222211 111 6677788888888887777 2211 1345666666
Q ss_pred hhcCCCcc--HHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCC
Q 000166 765 DTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (1974)
Q Consensus 765 ~~~L~~sN--~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~ 842 (1974)
.. |.+.+ +.||..++.+++.+-..+|..+.+|+..+-|.+...
T Consensus 613 ~~-l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~---------------------------------- 657 (876)
T 1qgr_A 613 RM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG---------------------------------- 657 (876)
T ss_dssp HH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH----------------------------------
T ss_pred HH-HHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------------------------------
Confidence 66 77765 589999999999999989888877765544433333
Q ss_pred CCCCccccccCCcHHHHhhcCCC-ChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc--hhHhHHHHHHHHH
Q 000166 843 DGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITL 919 (1974)
Q Consensus 843 d~lpRvDIs~kit~~l~~~l~d~-~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~D--sNk~lv~~al~ii 919 (1974)
+.+. +|.+|..|++.+..|+......+.|.. .+++..|...|.+ .+..+...++.++
T Consensus 658 -------------------l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l 717 (876)
T 1qgr_A 658 -------------------LKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVF 717 (876)
T ss_dssp -------------------HHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHH
T ss_pred -------------------HcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHH
Confidence 3333 688999999999999976555666654 7888889888865 5677999999999
Q ss_pred HHHHHhcChhHHhhhhhhhHHHHHHhccCc-----------hhHHHHHHHHHHHHHHhcc------------chhhhHHH
Q 000166 920 GAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------LDKMVPYV 976 (1974)
Q Consensus 920 ~~lA~amG~~~~k~~k~l~~~il~~l~D~K-----------~~vR~aa~~alda~~~~~g------------l~~~~~~i 976 (1974)
+.|+..+|+.|.+|...++|.++..+.++. ..+|.++..++..++...| +.++++.+
T Consensus 718 ~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 797 (876)
T 1qgr_A 718 GDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI 797 (876)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH
Confidence 999999999999999999999999998763 4899999999999988764 23445555
Q ss_pred HHHHh----cccCCcchHHHHHHHHHHHhccCCC---Ccc-hhhhhhhHhh-hccCCChHHHHHHHHHHHHHHH
Q 000166 977 TTALT----DAKLGAEGRKDLFDWLSKQLTGLSG---FPD-AAHLLKPASI-AMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 977 ~~~L~----~~~~~p~~R~e~l~wL~~~l~~~~~---~~~-~~~~~~p~~~-~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
...+. ++..+...|...+.-|.+-...... .+- ...++.|++. |+.|.+++||.+|.-+++.+.+
T Consensus 798 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 798 LSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 55553 2211456777665554443332322 111 2356778888 9999999999999999988765
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-16 Score=210.18 Aligned_cols=595 Identities=11% Similarity=0.111 Sum_probs=399.6
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhh-cCCCC-----CCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIA-----PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~-----~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~ 362 (1974)
.+.+.+.+.+|..|..++..|..++. .+... ......++..|.+.+.|.+..|-..|++|+..+.......+..
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~ 211 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML 211 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH
Confidence 45566677778888888888887764 23221 2235678888888889999999999999999988877777778
Q ss_pred chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC----CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC-hh
Q 000166 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KA 437 (1974)
Q Consensus 363 y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~----~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~-~~ 437 (1974)
+...+++.++..+.|....||.++..||..++.... ..+..+++.+...++++.+.||.+++.|+....+... +.
T Consensus 212 ~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~ 291 (852)
T 4fdd_A 212 HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD 291 (852)
T ss_dssp SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH
Confidence 888999999999999999999999999999987511 1255677777888899999999999999987654321 12
Q ss_pred HHhHhhhhhHHHHHhhh-----------CC-----------CCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHH
Q 000166 438 AVLKVHKDYVPICMECL-----------ND-----------GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495 (1974)
Q Consensus 438 ~~~~~~k~~~~~l~k~l-----------~D-----------s~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~K 495 (1974)
.+.+.+..++|.++..+ +| .+-.||.+|..+|+.+...+|+..+..+
T Consensus 292 ~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l----------- 360 (852)
T 4fdd_A 292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHI----------- 360 (852)
T ss_dssp HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHH-----------
Confidence 23345567889998888 33 3334677777777777666664322110
Q ss_pred HHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000166 496 LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETS 575 (1974)
Q Consensus 496 I~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s 575 (1974)
T Consensus 361 -------------------------------------------------------------------------------- 360 (852)
T 4fdd_A 361 -------------------------------------------------------------------------------- 360 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHhcCCCcc
Q 000166 576 KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSE 654 (1974)
Q Consensus 576 ~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~-~~~~~~~~Lvr~l~~~Pgwke 654 (1974)
-+-+...+.+.+|+.|.+|+..+....+... ......+-++..+. +..+|
T Consensus 361 ---------------------------~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~--~~l~d 411 (852)
T 4fdd_A 361 ---------------------------LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI--QCLSD 411 (852)
T ss_dssp ---------------------------HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH--HHTTC
T ss_pred ---------------------------HHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--HHcCC
Confidence 0122334556789999998888876665522 22223344555554 34689
Q ss_pred chHHHHHHHHHHHHHHHHhcC-CCCccchhhhccchhhcccc--chhhhHHHHHHHHHHHhhchH------hHHHHHHHh
Q 000166 655 KNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG------FIFERLYKI 725 (1974)
Q Consensus 655 sNfqV~~k~leil~~la~~~~-~fs~~~~~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~~p~------~V~~~l~~~ 725 (1974)
.|..|.......+..+++..+ .........+++.++..+.| .++|..+..+|..+++..+.. -++..++..
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence 999999999999988887432 23344556677888877765 578999999999999977653 234444444
Q ss_pred hhhcCChhhHHHHHHHHHHHHHHhccCccc---hHhHHHHHh---hhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhh
Q 000166 726 MKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCK---DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 799 (1974)
Q Consensus 726 ~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~---~K~lI~~~k---~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~ 799 (1974)
+ +.-+.+...-++..+..+.+..|-.... +..++..+. .. +.+..+.+| .++..++.+...+|..+.+|+.
T Consensus 492 l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~-l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~ 568 (852)
T 4fdd_A 492 F-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM-LKDEDKDLF-PLLECLSSVATALQSGFLPYCE 568 (852)
T ss_dssp H-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH-SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHH
T ss_pred H-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHh-cccccHHHH-HHHHHHHHHHHHHhHhHHHHHH
Confidence 3 3233444333334444444433432211 123333322 23 567778887 7899999999999999999998
Q ss_pred cchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHH
Q 000166 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK 879 (1974)
Q Consensus 800 dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~ 879 (1974)
.+=+.++..|..-+.+.... ... .+ ..+..+-..|.-+++.+..
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~-----------~~~--------~~-----------------~~~~~d~~~~~~~l~~l~~ 612 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLN-----------NAQ--------PD-----------------QYEAPDKDFMIVALDLLSG 612 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHC--------TT-----------------TSCCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------hcC--------Cc-----------------ccCCCcchHHHHHHHHHHH
Confidence 88887777777665431000 000 00 0001122357888999998
Q ss_pred HHHHcccCCCCCC-ccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHH
Q 000166 880 ILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLT 958 (1974)
Q Consensus 880 il~~ankrI~p~~-~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~ 958 (1974)
|+..-...+.|-. -..++..|-..+.|.+..+...+..+++.++.++|..|.+|...++|.++..|.+....+|..|..
T Consensus 613 l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~ 692 (852)
T 4fdd_A 613 LAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATW 692 (852)
T ss_dssp HHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHH
T ss_pred HHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHH
Confidence 8876545554421 146888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc--chhhhHHHHHH----HhcccCCcchHHHHHHHHHHHhccCCC--CcchhhhhhhHhhhccC-CChHHH
Q 000166 959 VLDAWLAAVH--LDKMVPYVTTA----LTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTD-KSSDVR 1029 (1974)
Q Consensus 959 alda~~~~~g--l~~~~~~i~~~----L~~~~~~p~~R~e~l~wL~~~l~~~~~--~~~~~~~~~p~~~~L~D-r~~dVR 1029 (1974)
++..++..+| +.++++.+... |.++..+..++..+..=|.+-....+. .+.+..++.+.+..|.+ ++.+.|
T Consensus 693 alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~ 772 (852)
T 4fdd_A 693 AIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEK 772 (852)
T ss_dssp HHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHH
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHH
Confidence 9999998886 44444444333 334432223443333333222222221 23355666667777754 555567
Q ss_pred HHHHHHHHHHHHh
Q 000166 1030 KAAEACIVEILRA 1042 (1974)
Q Consensus 1030 kaA~~~L~~~m~~ 1042 (1974)
..|...|..++..
T Consensus 773 ~~a~~~l~~li~~ 785 (852)
T 4fdd_A 773 DSAFRGICTMISV 785 (852)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777766666654
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-18 Score=215.07 Aligned_cols=552 Identities=13% Similarity=0.132 Sum_probs=362.0
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000166 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1974)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~ 684 (1974)
.++..|.|.+|..|..|+..+.......++. ...+.++.+|.. ..|.+-.|.....+.+..+....+. ......
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~-~~~~~l~~~L~~---~~d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ 87 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRSELLPFLTD---TIYDEDEVLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHHTHHHHHHH---TCCCCHHHHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHhCHH-HHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHHhccCc--HHHHHH
Confidence 5678999999999999999998765543221 122334555543 2266778888877777654432111 122344
Q ss_pred hccchhhccc--cchhhhHHHHHHHHHHHhhchHhHHHHHHHh---hhhcCChhhHHHHHHHHHHHHHHhccCccchHhH
Q 000166 685 CLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERLYKI---MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 759 (1974)
Q Consensus 685 ~l~~lveKlg--D~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~---~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~l 759 (1974)
+++.+..-+. +..+|..+.++|..+++..++..+...+++. +....++.++..++..+..+...+|-. ..+.+
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--~~~~l 165 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--VKAEL 165 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--HHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH--HHHHH
Confidence 4444433223 3568999999999999998887665544443 346778999999999988887766632 35678
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCC
Q 000166 760 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (1974)
Q Consensus 760 I~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~ 839 (1974)
+.++... +.+.|+.||.+|...++.+..++|+.. +..+
T Consensus 166 ~~~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~--------------------------------------- 203 (588)
T 1b3u_A 166 RQYFRNL-CSDDTPMVRRAAASKLGEFAKVLELDN--VKSE--------------------------------------- 203 (588)
T ss_dssp HHHHHHH-HTCSCHHHHHHHHHHHHHHHHTSCHHH--HHHT---------------------------------------
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhcHHh--HHHH---------------------------------------
Confidence 8888887 899999999999999999988877521 0111
Q ss_pred CCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHH
Q 000166 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL 919 (1974)
Q Consensus 840 ~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii 919 (1974)
+-+.+..-+.|.+|.+|..|++.+..+.....+. .....++..|...+.|.+-.+-..++.++
T Consensus 204 --------------l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l 266 (588)
T 1b3u_A 204 --------------IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKF 266 (588)
T ss_dssp --------------HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTH
T ss_pred --------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 2234555667889999999999999988642110 01234677788888999999999999999
Q ss_pred HHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccc--------hhhhHHHHHHHhcccCCcchHH
Q 000166 920 GAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPYVTTALTDAKLGAEGRK 991 (1974)
Q Consensus 920 ~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl--------~~~~~~i~~~L~~~~~~p~~R~ 991 (1974)
+.++..+|+.. +...++|.++..+.|..+.||.++..+|..+...+|- ..++|.+...+.++ ++..|.
T Consensus 267 ~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~ 342 (588)
T 1b3u_A 267 TELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--NQHVKS 342 (588)
T ss_dssp HHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHHH
T ss_pred HHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHHH
Confidence 99999998753 5567899999999999999999999999999988763 34445555555543 456666
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhcc
Q 000166 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (1974)
Q Consensus 992 e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~ 1071 (1974)
.+..+|.+-............++..+..+|.|.+.+||.++...|+.++..+|.+.+.+ .+.+
T Consensus 343 ~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-----------~~lp------ 405 (588)
T 1b3u_A 343 ALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQ-----------SLLP------ 405 (588)
T ss_dssp HHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHH-----------HHHH------
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHH-----------HHHH------
Confidence 65555432221111100011222335556677777777777777776666665432111 0111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhcccc
Q 000166 1072 ASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 1151 (1974)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~ 1151 (1974)
T Consensus 406 -------------------------------------------------------------------------------- 405 (588)
T 1b3u_A 406 -------------------------------------------------------------------------------- 405 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhh--HhHHHHHHHHHHhccccchHHHH
Q 000166 1152 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII--EVLDILLRWFVLQFCKSNTTCLL 1229 (1974)
Q Consensus 1152 f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~i--~~lDlllkw~tlr~~dtN~~vl~ 1229 (1974)
.+...+-+.+|+-+..+++.|.......+.+.. ..+.++++| +.|++..|-.
T Consensus 406 ----------------------~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~----l~d~~~~Vr~ 459 (588)
T 1b3u_A 406 ----------------------AIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW----LVDHVYAIRE 459 (588)
T ss_dssp ----------------------HHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHG----GGCSSHHHHH
T ss_pred ----------------------HHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH----hcCCcHHHHH
Confidence 111122233444443333333322211111110 113344444 4788888877
Q ss_pred HHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCc----cchHHHHHhhhccCCh
Q 000166 1230 KVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA----TKTLPYILEGLRSKNN 1305 (1974)
Q Consensus 1230 k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~----skvf~~l~~glksKN~ 1305 (1974)
..+..+..+...+.... -...++|.|+.-..|+...+|...-..+..++..++. ..++|.|+..++..++
T Consensus 460 ~a~~~l~~l~~~~~~~~------~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~ 533 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKEW------AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533 (588)
T ss_dssp HHHHHHHHHHHHHCHHH------HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHHHhCchh------HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCc
Confidence 78887777777654431 1356888888766777778887666666666554443 4678888888888889
Q ss_pred hhHhHHHHHHHHHHHhhcCccccccchHHHHHHHhccCChhHHHHHHHHHHH
Q 000166 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLAT 1357 (1974)
Q Consensus 1306 r~R~EcL~el~~li~~~G~~v~~~~Kal~~iA~~i~drD~~VR~AALn~l~~ 1357 (1974)
..|..++..++.+...+|-... ....++.+.++..|+|..||.+|..++..
T Consensus 534 ~Vr~~a~~~l~~l~~~~~~~~~-~~~~~p~l~~l~~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 534 NVRFNVAKSLQKIGPILDNSTL-QSEVKPILEKLTQDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 9999999999998887775421 12345778788899999999999988874
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-16 Score=210.46 Aligned_cols=652 Identities=14% Similarity=0.122 Sum_probs=429.0
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHhc-cccccchhh
Q 000166 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLR-THFSGSSRF 366 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~Ds--Nv~vv~~A~~~i~~LA~gLr-~~F~~y~~~ 366 (1974)
+.+.+.+...+. ..+.+.+..++..- ...+.+.+++..|...+.|. +..+...|+++++.++.-++ ..|..|...
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~-~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 172 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAE-IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE 172 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHH-GGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhh-CcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHH
Confidence 444454444444 44555555544320 01245778999999999877 88999999999999998874 458899999
Q ss_pred hHHHHHHHhccC--CHHHHHHHHHHHHHHHHhcCCChh------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH
Q 000166 367 LLPVLLEKLKEK--KPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1974)
Q Consensus 367 ~l~~lLeklKEK--K~~V~eA~~~aLda~~~~~~~~l~------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~ 438 (1974)
+++.++..+++. ...||.++.+||..++.+....+. .+++.+...+.+..+.+|..++.+|.+.+...++.
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~- 251 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY- 251 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG-
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH-
Confidence 999999999987 588999999999988754111111 35666777778888999999999999998876543
Q ss_pred HhHhhh-hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH-hcCCCCCCCCCCCccc
Q 000166 439 VLKVHK-DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI-AGSGGDVATGTSSARV 516 (1974)
Q Consensus 439 ~~~~~k-~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~-~~~~~~~~~~~~~~~~ 516 (1974)
+.+.+. .+++.+..++.|.+++||..|.+++..+.....+ +. ++. .+.. ++. .| .
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~--~~-----~~~------~~~~~~~~-------~~---~ 308 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD--LA-----IEA------SEAAEQGR-------PP---E 308 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HH-----HHH------HHHHHHSS-------CC---S
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh--Hh-----hhh------ccccccCC-------Cc---c
Confidence 223445 8899999999999999999999999888765321 00 000 0001 110 00 0
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHH
Q 000166 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1974)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~ 596 (1974)
. . .. .+....++.
T Consensus 309 ~---~---~~-------------------------------------------------------------~~~~~~~~~ 321 (876)
T 1qgr_A 309 H---T---SK-------------------------------------------------------------FYAKGALQY 321 (876)
T ss_dssp S---C---CC-------------------------------------------------------------CHHHHHHHH
T ss_pred c---h---hH-------------------------------------------------------------HHHHHHHHH
Confidence 0 0 00 000000000
Q ss_pred HHhccCcHhHHHhh-------hhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Q 000166 597 RLGSLIPADTVGQL-------KSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669 (1974)
Q Consensus 597 ~~~~l~~~~i~~~L-------~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~ 669 (1974)
++ +.++..| .+.+|..|.+|.+-+......... ...+.++.++.. .+.+.|.+|...++.++..
T Consensus 322 ----ll-~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~l~~l~~--~l~~~~~~~r~~a~~~l~~ 392 (876)
T 1qgr_A 322 ----LV-PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVPHVLPFIKE--HIKNPDWRYRDAAVMAFGC 392 (876)
T ss_dssp ----HH-HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHH--HTTCSSHHHHHHHHHHHHH
T ss_pred ----Hh-HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHHHHHHHHHH--HccCCChHHHHHHHHHHHH
Confidence 00 0011111 246899999998888766655432 224455555542 4678899999999999988
Q ss_pred HHHhcC-CCCccchhhhccchhhccccc--hhhhHHHHHHHHHHHhhch--------HhHHHHHHHhhhhcCChhhHHHH
Q 000166 670 LAATAT-KFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGP--------GFIFERLYKIMKDHKNPKVLSEG 738 (1974)
Q Consensus 670 la~~~~-~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~p--------~~V~~~l~~~~~~~KnPKv~ae~ 738 (1974)
+++... ..-......+++.++.-+.|. .+|..+..+|..+++..++ ..++..++..+. + +|+|+..+
T Consensus 393 i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~-~~~v~~~a 470 (876)
T 1qgr_A 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-A-EPRVASNV 470 (876)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-S-CHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc-C-CHHHHHHH
Confidence 765332 111123445677777777775 5899999999999998654 245566666653 3 49999999
Q ss_pred HHHHHHHHHHhcc-------------Ccc--chHhHHHHHhhhcCCCc---cHHHHHHHHHHHHHHHhhhCchhHhhhhc
Q 000166 739 ILWMVSAVEDFGV-------------SHL--KLKDLIDFCKDTGLQSS---AAATRNATIKLLGALHKFVGPDIKGFLAD 800 (1974)
Q Consensus 739 l~wl~~ai~eFG~-------------~~l--~~K~lI~~~k~~~L~~s---N~~VR~aAi~Ll~~ly~~~G~~l~~~l~d 800 (1974)
+..+..++..+|- ..+ -+..++..+... +... +..+|..+...++.+-..+|.....++..
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~-l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~ 549 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLET-TDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQK 549 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHH-TTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHH-HhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 9999999998870 112 236777777776 7654 57899999999999999999999999988
Q ss_pred chHHHHHHHHHHHhcCCCC-CCCCCcc--ccccc--cCcCCCCCCCCCCCCcccc---ccCCcHHHHhhcCCCC--hHHH
Q 000166 801 VKPALLSALDAEYEKNPFE-GTVVPKK--TVRAS--ESTSSVSSGGSDGLPREDI---SGKFTPTLVKSLESPD--WKVR 870 (1974)
Q Consensus 801 lkpall~~Ie~EF~K~~~~-~~p~p~R--~~r~~--~~~~~~~~~~~d~lpRvDI---s~kit~~l~~~l~d~~--WK~R 870 (1974)
+=|.++..+...+..-... +...+.. .+|.. .....- -..+++.++ .+.|-+.++.-+.+.. |.+|
T Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l----~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~ 625 (876)
T 1qgr_A 550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV----LRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQ 625 (876)
T ss_dssp HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHH----HTTSCHHHHHTTHHHHHHHHHHHC-----CCHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHH----HHHhChhhhhHHHHHHHHHHHHHHHhccCCCCcc
Confidence 8888888887765321100 0000000 00000 000000 000110111 2334445566666664 8999
Q ss_pred HHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccch-hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhcc--
Q 000166 871 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD-- 947 (1974)
Q Consensus 871 kEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~Ds-Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D-- 947 (1974)
.+++..+..|+......+.|-. .+++..|...|.|. +..+...|+.+++.|+.++|..+.+|...+++.++..|.+
T Consensus 626 ~~a~~~l~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 704 (876)
T 1qgr_A 626 EDALMAVSTLVEVLGGEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEN 704 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCcc
Confidence 9999999999976555566653 78899999999887 8999999999999999999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHHhccc--hhhhHHHHHHHh----ccc--CC-------cchHHHHHHHHHHHhccCCCC-----
Q 000166 948 NKKHMRECTLTVLDAWLAAVHL--DKMVPYVTTALT----DAK--LG-------AEGRKDLFDWLSKQLTGLSGF----- 1007 (1974)
Q Consensus 948 ~K~~vR~aa~~alda~~~~~gl--~~~~~~i~~~L~----~~~--~~-------p~~R~e~l~wL~~~l~~~~~~----- 1007 (1974)
....+|.+++.++..++..+|- ..+++.+...|. ... .+ ..+|..++.++...+......
T Consensus 705 ~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~ 784 (876)
T 1qgr_A 705 VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVH 784 (876)
T ss_dssp SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCC
T ss_pred ccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 4567999999999999988773 344554444443 111 01 157877777766444432211
Q ss_pred ---cchhhhhhhHh----hhccCC--ChHHHHHHHHHHHHHHHhcCHHHHHHH
Q 000166 1008 ---PDAAHLLKPAS----IAMTDK--SSDVRKAAEACIVEILRAGGQETIEKN 1051 (1974)
Q Consensus 1008 ---~~~~~~~~p~~----~~L~Dr--~~dVRkaA~~~L~~~m~~~G~~~~~~~ 1051 (1974)
..+.+++..++ ..+.|+ +.+||++|-.+|+.+..++|.+.+..+
T Consensus 785 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 837 (876)
T 1qgr_A 785 PDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837 (876)
T ss_dssp GGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 12233333222 233677 789999999999999999998444433
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-08 Score=125.41 Aligned_cols=377 Identities=12% Similarity=0.065 Sum_probs=257.8
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhc----------
Q 000166 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---------- 674 (1974)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~---------- 674 (1974)
.++.++.+.+-..|.+|-+.|.+.-... .......|+..+.. .+.+.+|.+...-++..+..+.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--~~~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVEN--LPTFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 3556677777788888888887643320 01123344555542 2345677777766666655321
Q ss_pred --CCCCccchhhhccchhhcccc--chhhhHHHHHHHHHHHhhchH----hHHHHHHHhhhhcC--ChhhHHHHHHHHHH
Q 000166 675 --TKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHK--NPKVLSEGILWMVS 744 (1974)
Q Consensus 675 --~~fs~~~~~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~~p~----~V~~~l~~~~~~~K--nPKv~ae~l~wl~~ 744 (1974)
..++...-..+-..+++.+.+ .++ ..+..++..++....|. -++..++..+ ... +|.++..++.++..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 123333333444445555554 467 77888888888876663 3556666664 445 89999999999999
Q ss_pred HHHHhccCcc--chHhHHHHHhhhcCCCc--cHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCC
Q 000166 745 AVEDFGVSHL--KLKDLIDFCKDTGLQSS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1974)
Q Consensus 745 ai~eFG~~~l--~~K~lI~~~k~~~L~~s--N~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~ 820 (1974)
+.+++....+ ....++..+..+ |++. |+.||.+|++.++.+-.++++.+... .|..
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~--------------~~~~----- 216 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDKE--------------SERH----- 216 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH--------------HHHH-----
T ss_pred HHHhCCchhhHhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh--------------HHHH-----
Confidence 9998742222 235677777776 8888 89999999998877643322111000 0000
Q ss_pred CCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCcc-chHHH
Q 000166 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGG 899 (1974)
Q Consensus 821 ~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~g-eL~~a 899 (1974)
.+-+.+...+.+.++.+|..+++.+..++....+++.+.. . +++..
T Consensus 217 --------------------------------~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~ 263 (462)
T 1ibr_B 217 --------------------------------FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAI 263 (462)
T ss_dssp --------------------------------HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHH
T ss_pred --------------------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 0112233345678899999999999999987667777775 7 89998
Q ss_pred HhhhccchhHhHHHHHHHHHHHHHHhc---------------------ChhHHhhhhhhhHHHHHHhcc-------Cchh
Q 000166 900 LRGRLYDSNKNLVMATLITLGAVASAM---------------------GPAVEKSSKGVLSDILKCLGD-------NKKH 951 (1974)
Q Consensus 900 Lk~Rl~DsNk~lv~~al~ii~~lA~am---------------------G~~~~k~~k~l~~~il~~l~D-------~K~~ 951 (1974)
+-..+.|.+..+...|+.++..++... ..-+++|...++|.++..|.+ ....
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888899999999999999999988753 223456778899999998864 3468
Q ss_pred HHHHHHHHHHHHHHhccchhhhHH----HHHHHhcccCCcchHHHHHHHHHHHhccCCC---CcchhhhhhhHhhhccCC
Q 000166 952 MRECTLTVLDAWLAAVHLDKMVPY----VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDK 1024 (1974)
Q Consensus 952 vR~aa~~alda~~~~~gl~~~~~~----i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~---~~~~~~~~~p~~~~L~Dr 1024 (1974)
+|.++..+|+..+..+| +.+++. +...|.++ ++..|...+.-|..-...... .+....++.+++.+|.|.
T Consensus 344 ~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 565554 44445443 577888888777655543331 123455666688899999
Q ss_pred ChHHHHHHHHHHHHHHHhcCH
Q 000166 1025 SSDVRKAAEACIVEILRAGGQ 1045 (1974)
Q Consensus 1025 ~~dVRkaA~~~L~~~m~~~G~ 1045 (1974)
++.||.+|..+|+.+...+|.
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998876
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.03 E-value=8.9e-08 Score=118.43 Aligned_cols=374 Identities=14% Similarity=0.103 Sum_probs=236.0
Q ss_pred CCCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCC--CCHHHHHHHHHHHHHHHHHcChh-----------h
Q 000166 21 LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD--SNAPVQDKALDALIAYLKAADAD-----------A 87 (1974)
Q Consensus 21 ~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~D--sN~~aqEk~leal~~~l~~a~~~-----------~ 87 (1974)
.+-+=-.|..|-+.|.+.... ..|.|..+ ++ ..+.+ .+..+...|.-.+..++...... .
T Consensus 11 ~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~--L~-~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l 83 (462)
T 1ibr_B 11 VSPDRLELEAAQKFLERAAVE----NLPTFLVE--LS-RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (462)
T ss_dssp TCSCHHHHHHHHHHHHHHHHH----HHHHHHHH--HH-HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHhh----ChHHHHHH--HH-HHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence 344556788888888763321 12344322 22 22333 36778888877777776432110 0
Q ss_pred hh-hhhHHHHHHHhhhhcCChhhHHHHHHHHHHHHhhchh----hhHHHHHHHHhhcc--CchhHHHHHHHHHHHHHhhC
Q 000166 88 GR-YAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQALSEFG 160 (1974)
Q Consensus 88 ~~-~~~~v~~~lveK~L~~r~ktk~~a~e~~l~~vE~e~~----~~v~e~ll~~~~~K--~PKvvaaai~~l~~~l~~FG 160 (1974)
.. ....+-..|++......+.. ..+..++-.++..+.+ ..++..|...+.+. +|-+.-+++.++..+.+++.
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~ 162 (462)
T 1ibr_B 84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID 162 (462)
T ss_dssp CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC
Confidence 00 11123333444322233344 4444444444433322 25666677777766 77777888888888877764
Q ss_pred CCccC--hhHHHhhchhhhcCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcch
Q 000166 161 AKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRK 236 (1974)
Q Consensus 161 ~kvv~--~K~ilk~l~~lf~h~--dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~ 236 (1974)
...+. ...++..+-.++.+. +..||.++.+.+..+-.+++ +.+ +. .+ |.
T Consensus 163 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~-----~~~-~~---~~-------~~----------- 215 (462)
T 1ibr_B 163 PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK-----ANF-DK---ES-------ER----------- 215 (462)
T ss_dssp GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH-----HHH-TS---HH-------HH-----------
T ss_pred chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH-----Hhh-hh---hH-------HH-----------
Confidence 33221 345666677777776 67788777665444322211 111 00 00 00
Q ss_pred hhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-c
Q 000166 237 IRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-T 315 (1974)
Q Consensus 237 ~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~ 315 (1974)
.| ++ ..+.+.+.+..+..|..+++.|..+.. .
T Consensus 216 -----------------------------------~~-------l~-----~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 216 -----------------------------------HF-------IM-----QVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp -----------------------------------HH-------HH-----HHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred -----------------------------------HH-------HH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 00 011223345567788999999888764 3
Q ss_pred CCCCCCChh-HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh---------------------ccccccchhhhHHHHHH
Q 000166 316 KRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGL---------------------RTHFSGSSRFLLPVLLE 373 (1974)
Q Consensus 316 pKi~~~dy~-dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gL---------------------r~~F~~y~~~~l~~lLe 373 (1974)
++.-...+. +++..+-..+.|.+-.|...|+..+..+++.. ..-+.+|...++|.+++
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 328 (462)
T 1ibr_B 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (462)
T ss_dssp GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHH
Confidence 433333355 78888888888999999999999999998764 12244577889999999
Q ss_pred Hhcc-------CCHHHHHHHHHHHHHHHHhcCCC---hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh
Q 000166 374 KLKE-------KKPTVAESLTQTLQAMHKAGCLN---LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1974)
Q Consensus 374 klKE-------KK~~V~eA~~~aLda~~~~~~~~---l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~ 443 (1974)
.+.+ ...++|.++..+|+.++.. .+ +..+++-+...+++.++.+|..++..|....+......+.+.+
T Consensus 329 ~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~--~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l 406 (462)
T 1ibr_B 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATC--CEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (462)
T ss_dssp HTTCCCSSCCTTCCSHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT
T ss_pred HHHhcccccccccchHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 9864 3568999999999999886 33 3345556667888999999999999888777654433333455
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000166 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
..++|.++.+++|+++.||.+|+.+|+.+...+|.
T Consensus 407 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999986
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.01 E-value=6.4e-07 Score=116.32 Aligned_cols=177 Identities=14% Similarity=0.180 Sum_probs=128.2
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
.++.+.+.+.+=.+|++++..+.-+...-. |...+.-.+-+.+.+.|..+-.++.-.+..+++.- ...+..+
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G~----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~ 87 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGK----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMA 87 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTTC----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHH
Confidence 356777888888899999999865432111 33444444555788999888888888888777641 2235677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhH
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1974)
++.+..-+++..+.||..+..+|-.+... --...+++++...+.+.+|.||..+..-+.+.....+.... ...++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~~--~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~ 162 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRVD--KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFL 162 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCSG--GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHH
Confidence 88999999999999997665444332110 11234556688899999999999999999999885543211 03578
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
+.+..+|+|+++.||.+|..+|+.+...-.
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999876543
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.79 E-value=8.7e-07 Score=115.11 Aligned_cols=383 Identities=11% Similarity=0.110 Sum_probs=250.8
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000166 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1974)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~ 684 (1974)
++.+.|.+.+-..|.+++..+.-..-...+. ...++..+ + -+.++|+.+-+.+.-.+..+++..+ -.+.+
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~---~~~~~~vi-~--l~~s~~~~~Krl~yl~l~~~~~~~~----e~~~l 86 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGKDV---SSLFPDVV-N--CMQTDNLELKKLVYLYLMNYAKSQP----DMAIM 86 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC---GGGHHHHH-H--TTSSSCHHHHHHHHHHHHHHHHHSH----HHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh---HHHHHHHH-H--HhCCCCHHHHHHHHHHHHHHcccCc----hHHHH
Confidence 4667788888889999999988544322221 12222222 2 2678899999888888887776422 22345
Q ss_pred hccchhhccccc--hhhhHHHHHHHHHHHhhch---HhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhH
Q 000166 685 CLLGISERVADI--KTRAHAMKCLTTFSEAVGP---GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 759 (1974)
Q Consensus 685 ~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~p---~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~l 759 (1974)
+++.+..-+.|. -.|..| |..++....+ .+++..+...+ .+.+|-|+..++..+..+.. .+...+.-..+
T Consensus 87 ~~n~l~kdL~~~n~~ir~~A---L~~L~~i~~~~~~~~l~~~l~~~L-~d~~~~VRk~A~~al~~i~~-~~p~~~~~~~~ 161 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALA---VRTMGCIRVDKITEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLHD-INAQMVEDQGF 161 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHH---HHHHHTCCSGGGHHHHHHHHHHHS-SCSCHHHHHHHHHHHHHHHH-SSCCCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHH---HHHHHcCChHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHh-hChhhcccccH
Confidence 566666666663 356655 4555554444 45555666654 79999999999999999887 33443433468
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCch---------hHhhh---hcchHHHHHHHHHHHhcCCCCCCCCCccc
Q 000166 760 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD---------IKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKT 827 (1974)
Q Consensus 760 I~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~---------l~~~l---~dlkpall~~Ie~EF~K~~~~~~p~p~R~ 827 (1974)
++.+..+ |.+.|+.||.+|+.+|+.+...-... +...+ .+..|-.+..|=.-+.+.. |.. .
T Consensus 162 ~~~l~~l-L~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~-~-- 234 (591)
T 2vgl_B 162 LDSLRDL-IADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN---PKD-D-- 234 (591)
T ss_dssp HHHHHHT-TSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---CCS-H--
T ss_pred HHHHHHH-hCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---CCC-h--
Confidence 8899998 99999999999999999987654322 21111 1212211111112223321 000 0
Q ss_pred cccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCC--CCCc----cchHHHHh
Q 000166 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ--PAGT----GELFGGLR 901 (1974)
Q Consensus 828 ~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~--p~~~----geL~~aLk 901 (1974)
+-..++-+.+...+.+.++-+|.||...+..+. +.+. |... +.+...|.
T Consensus 235 ---------------------~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~----~~~~~~~~~~~~~~~~~~~~L~ 289 (591)
T 2vgl_B 235 ---------------------REAQSICERVTPRLSHANSAVVLSAVKVLMKFL----ELLPKDSDYYNMLLKKLAPPLV 289 (591)
T ss_dssp ---------------------HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC----CSCCBTTBSHHHHHHHTHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----hccCCCHHHHHHHHHHHHHHHH
Confidence 001122234555688999999999998886654 2231 1111 12223333
Q ss_pred hhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 902 ~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
.|.+++.++.-.|++.++.++..-..-+..|.+.++ -.+.|. ..||..+++.|-.++...+.+.+++.+.+++.
T Consensus 290 -~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~----~~~~d~-~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~ 363 (591)
T 2vgl_B 290 -TLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF----VKYNDP-IYVKLEKLDIMIRLASQANIAQVLAELKEYAT 363 (591)
T ss_dssp -HHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS----CCTTSC-HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTT
T ss_pred -HHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe----eccCCh-HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHh
Confidence 345678899999999999999876666677766542 234555 99999999999998888888888998888887
Q ss_pred cccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcC
Q 000166 982 DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1974)
Q Consensus 982 ~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G 1044 (1974)
+. .++.|.++..+|...-...+ +....++..++..|.|....||+.+-.++..++....
T Consensus 364 ~~--d~~~r~~~v~aI~~la~~~~--~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 364 EV--DVDFVRKAVRAIGRCAIKVE--QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp SS--CHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred cC--CHHHHHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 54 57899999998876554432 2344455668888999999999988878888777654
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=98.62 E-value=8.3e-07 Score=109.62 Aligned_cols=378 Identities=12% Similarity=0.087 Sum_probs=240.4
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHh-hh-ccc------hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhc
Q 000166 603 PADTVGQLKSAVWKERLEAISSLRQQVEA-VQ-NLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA 674 (1974)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~E~l~~~v~~-~~-~~~------~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~ 674 (1974)
-+.++..|.+.+...|..|+..+.+.+.. .+ ... .....|++.|. .+.|..|+...+.++..++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~-----~~~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK-----RKENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCC
Confidence 35678889999999999999999987652 11 110 22344555553 1237889999999998877521
Q ss_pred CCCCccch-hhhccchhhcccc--chhhhHHHHHHHHHHHhhc--hH-----hHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 000166 675 TKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PG-----FIFERLYKIMKDHKNPKVLSEGILWMVS 744 (1974)
Q Consensus 675 ~~fs~~~~-~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~~--p~-----~V~~~l~~~~~~~KnPKv~ae~l~wl~~ 744 (1974)
....+..+ .-+++.++.-+.+ ..+|..+..+|..+++... -. -++..++..+....++.++..++..+..
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 11111110 2245566655544 5789999999998887421 11 1345566665445789999999988888
Q ss_pred HHHHhcc--CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCC
Q 000166 745 AVEDFGV--SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1974)
Q Consensus 745 ai~eFG~--~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p 822 (1974)
+....+. ...-+..+++.+... +.+.|+.||..|...|+.+-....+ .... +-+
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~------------~~~~----~~~------- 232 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPND------------KIQA----VID------- 232 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSHH------------HHHH----HHH-------
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCcH------------HHHH----HHH-------
Confidence 7753311 111236788888887 9999999999998888765432110 0000 000
Q ss_pred CCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhh
Q 000166 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1974)
Q Consensus 823 ~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~ 902 (1974)
..+-+.++.-+.+.+|.+|..|+..+..|........+.-.-..++..|..
T Consensus 233 -----------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 283 (450)
T 2jdq_A 233 -----------------------------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH 283 (450)
T ss_dssp -----------------------------TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH
T ss_pred -----------------------------cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHH
Confidence 012346777888999999999999999987532111110000136778888
Q ss_pred hccchhHhHHHHHHHHHHHHHHhcChhHHhhh-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc---ch-----hhh
Q 000166 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LD-----KMV 973 (1974)
Q Consensus 903 Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g---l~-----~~~ 973 (1974)
.|.+.|..+...|+.+++.|+.+-........ ..++|.++..|.|..+.||.++..+|..+..... .. .++
T Consensus 284 ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i 363 (450)
T 2jdq_A 284 LLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI 363 (450)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 88899999999999999999874322233332 3789999999999999999999999988875421 11 345
Q ss_pred HHHHHHHhcccCCcchHHHHHHHHHHHhccCCC--------Ccchhhhh------hhHhhhccCCChHHHHHHHHHHHHH
Q 000166 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAHLL------KPASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 974 ~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~--------~~~~~~~~------~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
+.+...|.++ ++..|..++.-|..-+..... ...+...+ ..+...+.+.+.+||+.|..+|..+
T Consensus 364 ~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 364 KPLCDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441 (450)
T ss_dssp HHHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5666666644 567777766555433321110 00111111 2233345677888888888877765
Q ss_pred H
Q 000166 1040 L 1040 (1974)
Q Consensus 1040 m 1040 (1974)
.
T Consensus 442 ~ 442 (450)
T 2jdq_A 442 F 442 (450)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=98.61 E-value=6.2e-07 Score=114.40 Aligned_cols=381 Identities=12% Similarity=0.087 Sum_probs=244.5
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHhhh-c-c-----chhHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHHHHhc
Q 000166 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQ-N-L-----DQSVEILVRLVCMLPGWSEK-NVQVQQQVIEVINYLAATA 674 (1974)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~-~-~-----~~~~~~Lvr~l~~~Pgwkes-NfqV~~k~leil~~la~~~ 674 (1974)
-+.++..|.+.++..|..|+..|.+.+.... + . ......|+.+| ++. |..|+...+.+|..++...
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L------~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM------RENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTT------STTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHh------CCCCCHHHHHHHHHHHHHHhCCC
Confidence 3677899999999999999999987765421 1 0 01123344333 333 7889988888888776521
Q ss_pred CCCCccch-hhhccchhhccc--cchhhhHHHHHHHHHHHhh--chHh-----HHHHHHHhhhhcCChhhHHHHHHHHHH
Q 000166 675 TKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAV--GPGF-----IFERLYKIMKDHKNPKVLSEGILWMVS 744 (1974)
Q Consensus 675 ~~fs~~~~-~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~~--~p~~-----V~~~l~~~~~~~KnPKv~ae~l~wl~~ 744 (1974)
+......+ .-+++.++.-+. +..++..+..+|..++... ...+ ++..++..+ .+.++.++..++..|..
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 11111100 124555555554 4678999999999988642 1122 344555554 45889999888887777
Q ss_pred HHHHhcc--CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCC
Q 000166 745 AVEDFGV--SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1974)
Q Consensus 745 ai~eFG~--~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p 822 (1974)
+....+. ...-...+++.+... |.+.++.||..|..+|+.+-... +.....+ + .
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~------------~~~~~~~---~-~------- 297 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGP------------QEAIQAV---I-D------- 297 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSC------------HHHHHHH---H-H-------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCC------------HHHHHHH---H-h-------
Confidence 7653311 112235778888887 99999999999999998765321 1111110 0 0
Q ss_pred CCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhh
Q 000166 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1974)
Q Consensus 823 ~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~ 902 (1974)
..+-+.++.-+.+.+|.+|..|+..+..|........+.-.-..++..|..
T Consensus 298 -----------------------------~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 298 -----------------------------VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp -----------------------------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred -----------------------------cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 012456778888999999999999999887421110010000236778888
Q ss_pred hccchhHhHHHHHHHHHHHHHHhcChhHHhhh-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccc----------hh
Q 000166 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DK 971 (1974)
Q Consensus 903 Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl----------~~ 971 (1974)
.|.+.+..+...|+.+++.|+.+-........ ..++|.++..|.+....+|.++..+|..+....+- ..
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 88899999999999999999874322222222 46899999999999999999999999988765321 12
Q ss_pred hhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC--------Ccchhh------hhhhHhhhccCCChHHHHHHHHHHH
Q 000166 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIV 1037 (1974)
Q Consensus 972 ~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~--------~~~~~~------~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1974)
+++.+...|.++ ++..|..++.-|..-+..... ...... .+..+...+.|.+.+||+.|..+|.
T Consensus 429 ~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 429 CIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp CHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 556677777654 577777776666544432211 011111 1334555678999999999998887
Q ss_pred HHHHhcCH
Q 000166 1038 EILRAGGQ 1045 (1974)
Q Consensus 1038 ~~m~~~G~ 1045 (1974)
.+...-.+
T Consensus 507 ~~~~~~~~ 514 (530)
T 1wa5_B 507 TYFGEEED 514 (530)
T ss_dssp HHSSSCC-
T ss_pred HHCCcccc
Confidence 76654433
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=98.59 E-value=7.1e-06 Score=101.29 Aligned_cols=183 Identities=14% Similarity=0.077 Sum_probs=127.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCcc-chHHHHhhhccch-hHhHHHHHHHHHHHHHHhcChhHHh
Q 000166 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTG-ELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEK 932 (1974)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~g-eL~~aLk~Rl~Ds-Nk~lv~~al~ii~~lA~amG~~~~k 932 (1974)
+.++..+.+.+..+|..|+..+.+++.. .++.++.-.-. .++..|-..|.+. |..+...|+.+++.++..-......
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 102 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRI 102 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4588888999999999999999999862 23332221112 5778888888777 8999999999999998743222222
Q ss_pred h-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-c------hhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000166 933 S-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1974)
Q Consensus 933 ~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l------~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~ 1004 (1974)
. ...++|.++..|.+..+.+|..|..+|..+..... . ...++.+...|.+. .++..|..+...|. .+...
T Consensus 103 ~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L~-~l~~~ 180 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWALS-NLCRG 180 (450)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHHH-HHHCC
T ss_pred HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHHH-HHhCC
Confidence 2 24689999999999999999999999988775421 0 23566677777642 25667777665554 44332
Q ss_pred C--CC--cchhhhhhhHhhhccCCChHHHHHHHHHHHHHH
Q 000166 1005 S--GF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1974)
Q Consensus 1005 ~--~~--~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1974)
. .. ......+.+++..|.+.+.+||..|..+|..+.
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS 220 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 2 11 123455666888888999999998887776654
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-06 Score=105.87 Aligned_cols=382 Identities=11% Similarity=0.068 Sum_probs=252.4
Q ss_pred cccccCCCChhHHHHHHHHHHHHhhhcCCCCChhhh--hhhhhhhhhcCCC-CHHHHHHHHHHHHHHHHHcChhhhhh--
Q 000166 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR--ELGPLFKKTVADS-NAPVQDKALDALIAYLKAADADAGRY-- 90 (1974)
Q Consensus 16 l~erL~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~--~~~~l~kk~v~Ds-N~~aqEk~leal~~~l~~a~~~~~~~-- 90 (1974)
|-+.|.+.+|..|..|...|.+.+....++.-..+. ...+.+-.++.+. |..+|+.++.+|..+...... ....
T Consensus 92 lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~ 170 (530)
T 1wa5_B 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVV 170 (530)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 456788999999999999999887542111101111 1223344567776 999999999988766543211 1111
Q ss_pred hhHHHHHHHhhhhcCChhhHHHHHHHHHHHHhhch--h-----hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCc
Q 000166 91 AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI 163 (1974)
Q Consensus 91 ~~~v~~~lveK~L~~r~ktk~~a~e~~l~~vE~e~--~-----~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kv 163 (1974)
..+.++.++.-.-+..+..+..|..++..++.... . ..++..|+..+.+.++.+...|+.+|..+...-+...
T Consensus 171 ~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 12345555554323577888888888877775321 1 2457778888888889999999888888775432221
Q ss_pred --cChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHH
Q 000166 164 --IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241 (1974)
Q Consensus 164 --v~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q 241 (1974)
.-...++..|-.++.|.|..||..+...+..|.. +.+ ... +.+
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~--~~~---~~~---------~~~--------------------- 295 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD--GPQ---EAI---------QAV--------------------- 295 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS--SCH---HHH---------HHH---------------------
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC--CCH---HHH---------HHH---------------------
Confidence 2234567777788899999999888777665542 111 000 000
Q ss_pred hHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcC-CCCC
Q 000166 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTK-RIAP 320 (1974)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~p-Ki~~ 320 (1974)
.. .+ + + +.+..-+.+.+|..|..|+..|..++... ....
T Consensus 296 ---------~~---~~-----------------------~---v--~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 335 (530)
T 1wa5_B 296 ---------ID---VR-----------------------I---P--KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335 (530)
T ss_dssp ---------HH---TT-----------------------C---H--HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ---------Hh---cC-----------------------c---H--HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHH
Confidence 00 00 0 0 13555567788999999999998876421 1000
Q ss_pred C-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccch-hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC
Q 000166 321 G-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1974)
Q Consensus 321 ~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~-~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~ 398 (1974)
. --..++..|..++.+.+..+...|+.+|+.|+.+-........ ..++|.+++-+.+....|+.++..+|-.++..+
T Consensus 336 ~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~- 414 (530)
T 1wa5_B 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG- 414 (530)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC-
Confidence 0 0013677888899988999999999999999975433222222 468999999999999999999999999887752
Q ss_pred CC-------h--hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh---------HHhHhh--hhhHHHHHhhhCCCC
Q 000166 399 LN-------L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---------AVLKVH--KDYVPICMECLNDGT 458 (1974)
Q Consensus 399 ~~-------l--~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~---------~~~~~~--k~~~~~l~k~l~Ds~ 458 (1974)
.. + ..+++.+...+.+.+|.++..++..|...+...+.. ..-..+ ...++.+..+++|.+
T Consensus 415 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~ 494 (530)
T 1wa5_B 415 LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 494 (530)
T ss_dssp TTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCC
Confidence 11 0 126678888999999999999998888887643221 111111 125778888999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000166 459 PEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 459 ~~VR~aA~~~l~~lmk 474 (1974)
++||+.|..+|..+..
T Consensus 495 ~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 495 DKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999998887765553
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-06 Score=110.93 Aligned_cols=380 Identities=12% Similarity=0.091 Sum_probs=244.8
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhh-c-c-----chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ-N-L-----DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~-~-~-----~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~ 676 (1974)
+.++..|.+.++..|+.|...|...+.... + . ......|+.+|. .+.|..|+...+.+|..++.....
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~-----~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT-----REDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC-----CCCCHHHHHHHHHHHHHHhCCCHH
Confidence 567889999999999999999987765422 1 1 122455666663 223478888888888888763211
Q ss_pred CCccch-hhhccchhhccc--cchhhhHHHHHHHHHHHhhch--Hh-----HHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 000166 677 FPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1974)
Q Consensus 677 fs~~~~-~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~~~p--~~-----V~~~l~~~~~~~KnPKv~ae~l~wl~~ai 746 (1974)
.....+ .-+++.++.-+. +..++..+..+|..++..... .. ++..++..+..+.++.++..++..|..+.
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111111 124555555554 456889999999998863211 12 24456666556789999998888887776
Q ss_pred HHhcc-CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCc
Q 000166 747 EDFGV-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPK 825 (1974)
Q Consensus 747 ~eFG~-~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~ 825 (1974)
..... ...-...+++.+... |.+.|+.||..|...|+.+-....+.+..++ .
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~----------------~---------- 284 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDKIQAVI----------------E---------- 284 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHHHHHHH----------------H----------
T ss_pred cCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH----------------H----------
Confidence 54311 112236788888888 9999999999999988765422111111100 0
Q ss_pred cccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc
Q 000166 826 KTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (1974)
Q Consensus 826 R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~ 905 (1974)
..+-+.|+.-+.+.+|.+|..|+..|..|........+.-.-..++..|...|.
T Consensus 285 --------------------------~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 285 --------------------------AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp --------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred --------------------------cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc
Confidence 012346788888999999999999999888521111111001235677777887
Q ss_pred ch-hHhHHHHHHHHHHHHHHhcChhHHhh-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc---c-----hhhhHH
Q 000166 906 DS-NKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---L-----DKMVPY 975 (1974)
Q Consensus 906 Ds-Nk~lv~~al~ii~~lA~amG~~~~k~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g---l-----~~~~~~ 975 (1974)
+. +..+...|+.+++.|+.+-....... ...++|.++..|.+....+|..|..+|..+....+ . ..+++.
T Consensus 339 ~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 418 (528)
T 4b8j_A 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 418 (528)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 77 99999999999999987422222222 33789999999999999999999999998876621 1 234556
Q ss_pred HHHHHhcccCCcchHHHHHHHHHHHhccCCC--------Ccchhh------hhhhHhhhccCCChHHHHHHHHHHHHHHH
Q 000166 976 VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 976 i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~--------~~~~~~------~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
+...|.++ ++..+..++.-|..-+..... ...... .+..+...+.+.+.+|++.|..+|..+..
T Consensus 419 L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 419 LCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 66767654 566676666555444321110 011111 23345666789999999999999987765
Q ss_pred hc
Q 000166 1042 AG 1043 (1974)
Q Consensus 1042 ~~ 1043 (1974)
.-
T Consensus 497 ~e 498 (528)
T 4b8j_A 497 DE 498 (528)
T ss_dssp --
T ss_pred Cc
Confidence 43
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-06 Score=118.76 Aligned_cols=193 Identities=17% Similarity=0.199 Sum_probs=161.3
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcC-CCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh--ccccccchh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTK-RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSR 365 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~p-Ki~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gL--r~~F~~y~~ 365 (1974)
+.+..+..++=.+|+++-..+-.++... -...-.| .++..|++-+.|-+-. --|+..++.||+-. .+.+.+|.-
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 3455666666788999999988866532 2222334 6999999999987666 89999999999544 568999999
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh---hhhHHHHHHHhhcC-CchhHHHHHHHHHHHHhhCChhHHhH
Q 000166 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLK 441 (1974)
Q Consensus 366 ~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l---~~~~e~i~~al~~K-nP~vk~etl~~L~r~l~~~~~~~~~~ 441 (1974)
.++|.+|+.+.||+..|++|+..|+++++.. ++. ..+++.+..+|++. .+|.|...+.++.+..+.. +..+..
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~ 171 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNA--VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVAL 171 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHH
Confidence 9999999999999999999999999999986 454 45678888999876 4999999999999999876 444556
Q ss_pred hhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000166 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1974)
Q Consensus 442 ~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~ 487 (1974)
.+..++|.+..++-|..++|.++|.+++-.+-.++|.+.+.+++..
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~ 217 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPS 217 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHH
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHH
Confidence 6789999999999999999999999999999999999888888874
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00081 Score=92.09 Aligned_cols=263 Identities=10% Similarity=0.091 Sum_probs=148.2
Q ss_pred hhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCC--ccHHHHHHHHHHHHHHHhhhC-chhHhhhhcchHHHHH
Q 000166 732 PKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKPALLS 807 (1974)
Q Consensus 732 PKv~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L~~--sN~~VR~aAi~Ll~~ly~~~G-~~l~~~l~dlkpall~ 807 (1974)
|+|+..++.-+..+.++++-...+ +..++..+-.+ +.+ ....+|......+|.+...++ +....++..+=+.++.
T Consensus 557 ~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~-l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~ 635 (971)
T 2x1g_F 557 SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHAS-LNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFE 635 (971)
T ss_dssp SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 445544444444444444322111 13344444444 444 346888899999999988776 5566666655455555
Q ss_pred HHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccC
Q 000166 808 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887 (1974)
Q Consensus 808 ~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankr 887 (1974)
.++.-. +. ... .++ +-...-+.++.+..++..-+..
T Consensus 636 ~l~~~~-~~---~~~--------------------------------~~~--------~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 636 ELQAIC-QA---DSK--------------------------------TPA--------ARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp HHHHHH-TC--------------------------------------CHH--------HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHH-hc---CCC--------------------------------Chh--------hHHHHHHHHHHHHHHHhhcCCC
Confidence 444321 11 000 000 0112234555555555432222
Q ss_pred CCCC------------CccchHHHHhhhccch--hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHH
Q 000166 888 IQPA------------GTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 953 (1974)
Q Consensus 888 I~p~------------~~geL~~aLk~Rl~Ds--Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR 953 (1974)
+.++ ...+++..+..-+.+. +..++..+..+++.++.++|..|.+|.-.+++.++..+....-
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~--- 748 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC--- 748 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---
Confidence 1110 0245666666655432 4578899999999999999999999988888888888766432
Q ss_pred HHHHHHHHHHHHhccch--------hhhHH----HHHHHhc-----ccCCcchHHHHHHHHHHHhccCCC----Ccc-hh
Q 000166 954 ECTLTVLDAWLAAVHLD--------KMVPY----VTTALTD-----AKLGAEGRKDLFDWLSKQLTGLSG----FPD-AA 1011 (1974)
Q Consensus 954 ~aa~~alda~~~~~gl~--------~~~~~----i~~~L~~-----~~~~p~~R~e~l~wL~~~l~~~~~----~~~-~~ 1011 (1974)
.+++..+..++...|-+ .+++. +...|.. ...+|+.+.+.+.++.+.+...+. ++. +.
T Consensus 749 ~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~ 828 (971)
T 2x1g_F 749 APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYD 828 (971)
T ss_dssp HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHH
Confidence 46888888888877764 22221 1122221 123689999999999998877654 222 44
Q ss_pred hhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 1012 ~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
.++.-+..+|.-...++-+++-.++..++..
T Consensus 829 ~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 829 RLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp HHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 4444455566545555667777788776665
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00026 Score=94.95 Aligned_cols=496 Identities=12% Similarity=0.081 Sum_probs=272.6
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-----
Q 000166 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----- 397 (1974)
Q Consensus 323 y~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~----- 397 (1974)
|..=+..|-..|.+.+..+...+++++..+.+. -.....+|.++.-+++..+.|++.+..+|-.++...
T Consensus 113 ~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~------~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~ 186 (780)
T 2z6g_A 113 FDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA------ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA 186 (780)
T ss_dssp -------------CCSCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred ccccHHHHHHHhcCccHHHHHHHHHHHHhhhHH------HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHH
Confidence 444455566666666666666777777655332 234678999999999999999999999999887530
Q ss_pred CCChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 398 CLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 398 ~~~l~~~~e~i~~al~~K-nP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
......+++.+...|.+. ++.+|..++..|.. |.... .....+. ...+|.++.+|.+.++.||..|+.+|..|...
T Consensus 187 i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN-LSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHH-HhCCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 011235777888888754 89999999988887 43322 1111111 35899999999999999999999999998865
Q ss_pred hChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCC
Q 000166 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASK 555 (1974)
Q Consensus 476 ~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~ 555 (1974)
-.+. +..+.+ . + .
T Consensus 265 ~~~~-------------~~~v~~---~-g----------~---------------------------------------- 277 (780)
T 2z6g_A 265 QEGA-------------KMAVRL---A-G----------G---------------------------------------- 277 (780)
T ss_dssp STTH-------------HHHHHH---T-T----------H----------------------------------------
T ss_pred Chhh-------------HHHHHH---c-C----------C----------------------------------------
Confidence 3311 111110 0 0 0
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh----
Q 000166 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA---- 631 (1974)
Q Consensus 556 k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~---- 631 (1974)
-+.++..|.+.+|+.|-.+...+..+...
T Consensus 278 -----------------------------------------------v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~ 310 (780)
T 2z6g_A 278 -----------------------------------------------LQKMVALLNKTNVKFLAITTDCLQILAYGNQES 310 (780)
T ss_dssp -----------------------------------------------HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHH
Confidence 00112222233333333333322211100
Q ss_pred ---hhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHH
Q 000166 632 ---VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTT 708 (1974)
Q Consensus 632 ---~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~ 708 (1974)
+-. ....+.|++.+... +.-.+......++..++. +. ..+. .
T Consensus 311 ~~~i~~-~~~i~~Lv~lL~~~-----~~~~~~~~a~~aL~~Ls~-~~---------------------~~~~-------~ 355 (780)
T 2z6g_A 311 KLIILA-SGGPQALVNIMRTY-----TYEKLLWTTSRVLKVLSV-CS---------------------SNKP-------A 355 (780)
T ss_dssp HHHHHT-TTHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHHT-ST---------------------THHH-------H
T ss_pred HHHHHH-cCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHhhc-Ch---------------------HHHH-------H
Confidence 000 12245566655311 122222333344443332 10 0000 0
Q ss_pred HHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHh
Q 000166 709 FSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (1974)
Q Consensus 709 ~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~ 788 (1974)
+.+. -++..++..+ .+.++.++..++..+..+..... .......+|..+... |.+.|+.||..|..+|+.+-.
T Consensus 356 i~~~----g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~i~~Lv~l-L~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 356 IVEA----GGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT-KQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHHT----THHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCT-TCSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTS
T ss_pred HHHh----chHHHHHHHH-cCCchHHHHHHHHHHHHHhccch-hhhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHh
Confidence 0110 1233344443 34567777777666665554332 223456788888888 999999999999999986643
Q ss_pred hhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCC-C
Q 000166 789 FVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-P 865 (1974)
Q Consensus 789 ~~G~~l~~~l--~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d-~ 865 (1974)
. .+..+..+ .+.=| .|+.-+.+ .
T Consensus 429 ~-~~~~~~~i~~~g~i~-----------------------------------------------------~Lv~lL~~~~ 454 (780)
T 2z6g_A 429 N-NYKNKMMVCQVGGIE-----------------------------------------------------ALVRTVLRAG 454 (780)
T ss_dssp S-CHHHHHHHHTTTHHH-----------------------------------------------------HHHHHHHHHT
T ss_pred C-CHHHHHHHHHCCCHH-----------------------------------------------------HHHHHHHccC
Confidence 1 11122111 11112 23333332 2
Q ss_pred Ch-HHHHHHHHHHHHHHHHc------ccCCCCCCccchHHHHhhhccchhH-hHHHHHHHHHHHHHHhcChhHHhhh--h
Q 000166 866 DW-KVRLESIEAVNKILEEA------NKRIQPAGTGELFGGLRGRLYDSNK-NLVMATLITLGAVASAMGPAVEKSS--K 935 (1974)
Q Consensus 866 ~W-K~RkEaLe~v~~il~~a------nkrI~p~~~geL~~aLk~Rl~DsNk-~lv~~al~ii~~lA~amG~~~~k~~--k 935 (1974)
+| .+|..|+..|..|.... ...|.. ...+..|-..|.+.+. .++..|+.+++.|+. ++...... .
T Consensus 455 ~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~---~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~ 529 (780)
T 2z6g_A 455 DREDITEPAICALRHLTSRHQDAEMAQNAVRL---HYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQ 529 (780)
T ss_dssp TCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH---TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH---cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHC
Confidence 34 67777777777664210 001111 1235667677766664 889999999999984 54444322 2
Q ss_pred hhhHHHHHHhccCc----------------------hhHHHHHHHHHHHHHHh------ccchhhhHHHHHHHhcccCCc
Q 000166 936 GVLSDILKCLGDNK----------------------KHMRECTLTVLDAWLAA------VHLDKMVPYVTTALTDAKLGA 987 (1974)
Q Consensus 936 ~l~~~il~~l~D~K----------------------~~vR~aa~~alda~~~~------~gl~~~~~~i~~~L~~~~~~p 987 (1974)
.++|.+++.|.+.. ..++.++..||...... ..-...++.+...|.++ ++
T Consensus 530 g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~ 607 (780)
T 2z6g_A 530 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP--IE 607 (780)
T ss_dssp THHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--CH
T ss_pred CCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--CH
Confidence 57788888886643 34566666666653210 11123456667777754 56
Q ss_pred chHHHHHHHHHHHhccCCCC-cch--hhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcC
Q 000166 988 EGRKDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1974)
Q Consensus 988 ~~R~e~l~wL~~~l~~~~~~-~~~--~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G 1044 (1974)
..|.....-|..-. ..+.. ..+ ...+.++...+.|.+.+||..|..+|..+...-.
T Consensus 608 ~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 608 NIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 67777666555322 11111 011 1245668888999999999999999998877655
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00045 Score=90.26 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHH
Q 000166 384 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRD 463 (1974)
Q Consensus 384 eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~ 463 (1974)
+++...+-.+.. | .......-++...+.+++..+|.-...++...+...+ . ++--.+..+.+-|+|+++-||-
T Consensus 53 ~~l~kli~~~~~-G-~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~-e----~~~l~in~l~kDL~~~n~~vr~ 125 (618)
T 1w63_A 53 RNVAKLLYMHML-G-YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQ-D----VHLLMTNCIKNDLNHSTQFVQG 125 (618)
T ss_dssp HHHHHHHHHHHT-T-CCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH-H----HHHHHHHHHHHHHSCSSSHHHH
T ss_pred HHHHHHHHHHHc-C-CCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCc-H----HHHHHHHHHHHhcCCCCHhHHH
Confidence 445455444332 2 2445566677778888888888887777777665431 1 1234677888888999999998
Q ss_pred HHHHHHHHHH
Q 000166 464 AAFSVLAAIA 473 (1974)
Q Consensus 464 aA~~~l~~lm 473 (1974)
.|..+|+.+.
T Consensus 126 lAL~~L~~i~ 135 (618)
T 1w63_A 126 LALCTLGCMG 135 (618)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8888887764
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.34 E-value=8.6e-05 Score=94.42 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=123.0
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcc-cCCCCCCccchHHHHhhhccchh-HhHHHHHHHHHHHHHHhcChhHHhh
Q 000166 856 PTLVKSLESPDWKVRLESIEAVNKILEEAN-KRIQPAGTGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKS 933 (1974)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~an-krI~p~~~geL~~aLk~Rl~DsN-k~lv~~al~ii~~lA~amG~~~~k~ 933 (1974)
+.++..+.+.+|..|.+|+..+..++.... +.+..-.-..++..|-.-|.+.+ ..+...|+.+++.|+..- +.....
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~ 155 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKV 155 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHH
Confidence 568889999999999999999999985321 11111111346777777887766 899999999999999742 333332
Q ss_pred --hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-c------hhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000166 934 --SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1974)
Q Consensus 934 --~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l------~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~ 1004 (1974)
....+|.++..|.+....||..|..+|..+..... . ...++.+...|.+. .++..+..+. |....|...
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~-~~L~~L~~~ 233 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNAT-WTLSNFCRG 233 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHH-HHHHHHHCS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHH-HHHHHHHcC
Confidence 23689999999999999999999999988864321 0 12345566666322 2455555554 433445443
Q ss_pred CCCc---chhhhhhhHhhhccCCChHHHHHHHHHHHHHH
Q 000166 1005 SGFP---DAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1974)
Q Consensus 1005 ~~~~---~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1974)
.... .....+.+++..|.+.+.+||..|-.+|..+.
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 2211 12345556777889999999999888887665
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00082 Score=87.96 Aligned_cols=497 Identities=13% Similarity=0.091 Sum_probs=269.7
Q ss_pred CCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHhccC-CHHHHHHHHHHHHHH
Q 000166 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEK-KPTVAESLTQTLQAM 393 (1974)
Q Consensus 316 pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~-y~~~~l~~lLeklKEK-K~~V~eA~~~aLda~ 393 (1974)
+++..|. +..|.+++.|.|..+...|+.+|+.|+..-.....- ....+++.+++.|++. -+.++..+..+|-.+
T Consensus 9 ~~~~~g~----i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 9 AELATRA----IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 84 (644)
T ss_dssp ---CTTT----HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hhhhhch----HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444454 444555667889999999999999999865421111 1236789999999875 788888888888765
Q ss_pred HHhcCCC---h--hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHH
Q 000166 394 HKAGCLN---L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFS 467 (1974)
Q Consensus 394 ~~~~~~~---l--~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~ 467 (1974)
... ... + ...++.+...+++.++.++..++.-|........... ..+. ...+|.++.+|.+.++.+|.++..
T Consensus 85 s~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~ 162 (644)
T 2z6h_A 85 SHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTD 162 (644)
T ss_dssp TTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH-HHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred hcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH-HHHHHCCChHHHHHHHCcCCHHHHHHHHH
Confidence 432 000 0 1356778889999999999999998888776542211 1122 458999999999999999999998
Q ss_pred HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCC
Q 000166 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (1974)
Q Consensus 468 ~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p 547 (1974)
+|..+.. |.......+...+. -..+.+++...
T Consensus 163 ~L~~La~--~~~~~~~~i~~~g~--v~~Lv~lL~~~-------------------------------------------- 194 (644)
T 2z6h_A 163 CLQILAY--GNQESKLIILASGG--PQALVNIMRTY-------------------------------------------- 194 (644)
T ss_dssp HHHHHHT--TCHHHHHHHHHTTH--HHHHHHHHTTC--------------------------------------------
T ss_pred HHHHHHh--cCcHHHHHHHHcCC--hHHHHHHHHcC--------------------------------------------
Confidence 8887764 21111111111110 11122222110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhh-ccHHHHHHHHHHHH
Q 000166 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLR 626 (1974)
Q Consensus 548 ~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s-~~WK~RL~a~E~l~ 626 (1974)
+.+++...+. .++..|.. ..-+..+
T Consensus 195 ------------------------------------------~~~~~~~~a~-----~~L~nLs~~~~~~~~l------- 220 (644)
T 2z6h_A 195 ------------------------------------------TYEKLLWTTS-----RVLKVLSVCSSNKPAI------- 220 (644)
T ss_dssp ------------------------------------------CCHHHHHHHH-----HHHHHHTTCTTHHHHH-------
T ss_pred ------------------------------------------ChHHHHHHHH-----HHHHHHhcCcccHHHH-------
Confidence 0001100000 00000100 0000000
Q ss_pred HHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhcc--ccchhhhHHHH
Q 000166 627 QQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERV--ADIKTRAHAMK 704 (1974)
Q Consensus 627 ~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKl--gD~K~r~~a~e 704 (1974)
++. ...+.|+.++ ++.+..+...++.++..++.....+. ...-+++.++.-+ .|..++..+..
T Consensus 221 --~~~-----g~l~~L~~ll------~~~~~~~~~~a~~~L~nL~~~~~~~~--~~~~~i~~Lv~lL~~~d~~v~~~a~~ 285 (644)
T 2z6h_A 221 --VEA-----GGMQALGLHL------TDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAG 285 (644)
T ss_dssp --HHT-----THHHHHHTTT------TCSCHHHHHHHHHHHHHHGGGCTTCC--SCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred --HHC-----CCHHHHHHHH------hcCCHHHHHHHHHHHHHHhhcchhhh--hhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence 000 0112222222 23355566666666666554322211 1122344444333 34567777777
Q ss_pred HHHHHHHhhc--hH-----hHHHHHHHhhhhcC-ChhhHHHHHHHHHHHHHHhccC-----ccchHhHHHHHhhhcCCCc
Q 000166 705 CLTTFSEAVG--PG-----FIFERLYKIMKDHK-NPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSS 771 (1974)
Q Consensus 705 ~L~~~aE~~~--p~-----~V~~~l~~~~~~~K-nPKv~ae~l~wl~~ai~eFG~~-----~l~~K~lI~~~k~~~L~~s 771 (1974)
+|..++.... -+ -++..++..+.... ++.++..++..|..+....+-. .+--...++.+..+ |.+.
T Consensus 286 aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l-L~~~ 364 (644)
T 2z6h_A 286 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPP 364 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT-TSTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH-hCcc
Confidence 7776665311 11 14556666654433 3788888888777764211100 00001345566666 8877
Q ss_pred c-HHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccc
Q 000166 772 A-AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 850 (1974)
Q Consensus 772 N-~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDI 850 (1974)
+ +.||.+|..+|+.+.. |+..+..+ -.
T Consensus 365 ~~~~v~~~a~~~L~nLa~--~~~~~~~i---------------~~----------------------------------- 392 (644)
T 2z6h_A 365 SHWPLIKATVGLIRNLAL--CPANHAPL---------------RE----------------------------------- 392 (644)
T ss_dssp CCHHHHHHHHHHHHHHTT--SGGGHHHH---------------HH-----------------------------------
T ss_pred CchHHHHHHHHHHHHHcc--CHHHHHHH---------------HH-----------------------------------
Confidence 5 7999999988877753 22211111 00
Q ss_pred ccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhH
Q 000166 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (1974)
Q Consensus 851 s~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~ 930 (1974)
..+-+.|+.-+.+.+|.+|+||.-.+. |..+..+. ++..++..++.++..++..- ..
T Consensus 393 -~~~i~~Lv~lL~~~~~~vr~~a~~al~------n~~~~~~~--------------~~~~v~~~a~~aL~~La~~~--~~ 449 (644)
T 2z6h_A 393 -QGAIPRLVQLLVRAHQDTQRRTSMGGT------QQQFVEGV--------------RMEEIVEGCTGALHILARDV--HN 449 (644)
T ss_dssp -TTHHHHHHHHHHHHHHHHTTC----------------CCSS--------------CHHHHHHHHHHHHHHHTTSH--HH
T ss_pred -cCCHHHHHHHHhccchhhhhHhhhccc------cchhcccc--------------cHHHHHHHHHHHHHHHhcCH--HH
Confidence 001234566666677777777665432 11111111 24456666777777666432 22
Q ss_pred Hhh--hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCc
Q 000166 931 EKS--SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (1974)
Q Consensus 931 ~k~--~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~ 1008 (1974)
..+ ....+|+++..|.+.-..||..+..+|...... +.....+..
T Consensus 450 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-------~~~~~~i~~-------------------------- 496 (644)
T 2z6h_A 450 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-------KEAAEAIEA-------------------------- 496 (644)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-------HHHHHHHHH--------------------------
T ss_pred HHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-------HHHHHHHHH--------------------------
Confidence 222 235789999999999999999988877665321 111111110
Q ss_pred chhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHH
Q 000166 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQE 1046 (1974)
Q Consensus 1009 ~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~ 1046 (1974)
...+.++...+.|.+++||..|..+|..+..+-+.+
T Consensus 497 --~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~ 532 (644)
T 2z6h_A 497 --EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 532 (644)
T ss_dssp --TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHH
T ss_pred --cCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHh
Confidence 112456777789999999999999999887766543
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00033 Score=93.96 Aligned_cols=518 Identities=13% Similarity=0.077 Sum_probs=292.0
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc-cchhhh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFL 367 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~-~y~~~~ 367 (1974)
.+...|.+.....|..+++.+..+. ...+. ...+..|.+++.+.|..|...|+.+|..|+..-..... .....+
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~-~~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQD-DAELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhh-HHHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 5888888888888888888765431 11221 34567777777788999999999999999975321110 012468
Q ss_pred HHHHHHHhccC-CHHHHHHHHHHHHHHHHhcC----CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHh
Q 000166 368 LPVLLEKLKEK-KPTVAESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1974)
Q Consensus 368 l~~lLeklKEK-K~~V~eA~~~aLda~~~~~~----~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~ 442 (1974)
++.|++.|+.. .+.++..+..+|-.+..... +.-...++.+...|++.++.+|.+++..|........... ..+
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MAV 272 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH-HHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH-HHH
Confidence 99999999855 78899888888877643200 0001356778889999999999999999988776532211 111
Q ss_pred h-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCC
Q 000166 443 H-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (1974)
Q Consensus 443 ~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (1974)
. ...+|.++.+|.+.+..||..+..+|..+.. |.......+...+. -..+..++...
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~--i~~Lv~lL~~~------------------ 330 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGG--PQALVNIMRTY------------------ 330 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTH--HHHHHHHHTTC------------------
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCC--HHHHHHHHhcC------------------
Confidence 1 4589999999999999999999999885542 21111111100000 00111111000
Q ss_pred CCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhcc
Q 000166 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (1974)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l 601 (1974)
+.+.....+.
T Consensus 331 --------------------------------------------------------------------~~~~~~~~a~-- 340 (780)
T 2z6g_A 331 --------------------------------------------------------------------TYEKLLWTTS-- 340 (780)
T ss_dssp --------------------------------------------------------------------CCHHHHHHHH--
T ss_pred --------------------------------------------------------------------CHHHHHHHHH--
Confidence 0011111110
Q ss_pred CcHhHHHhhhh-ccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCcc
Q 000166 602 IPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (1974)
Q Consensus 602 ~~~~i~~~L~s-~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~ 680 (1974)
.++..|.. ...+..+ ++. .....|+.++ .+.+..+....+.++..++.....+.
T Consensus 341 ---~aL~~Ls~~~~~~~~i---------~~~-----g~l~~Ll~lL------~~~~~~~~~~a~~~L~~L~~~~~~~~-- 395 (780)
T 2z6g_A 341 ---RVLKVLSVCSSNKPAI---------VEA-----GGMQALGLHL------TDPSQRLVQNCLWTLRNLSDAATKQE-- 395 (780)
T ss_dssp ---HHHHHHHTSTTHHHHH---------HHT-----THHHHHGGGT------TCSCHHHHHHHHHHHHHHHTTCTTCS--
T ss_pred ---HHHHHhhcChHHHHHH---------HHh-----chHHHHHHHH------cCCchHHHHHHHHHHHHHhccchhhh--
Confidence 11111111 1111111 000 0123333333 34466778888888888876543321
Q ss_pred chhhhccchhhccc--cchhhhHHHHHHHHHHHhhch-------HhHHHHHHHhhhhcCCh-hhHHHHHHHHHHHHHHhc
Q 000166 681 CVVLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNP-KVLSEGILWMVSAVEDFG 750 (1974)
Q Consensus 681 ~~~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~~~p-------~~V~~~l~~~~~~~KnP-Kv~ae~l~wl~~ai~eFG 750 (1974)
...-+++.++.-+. |..++..+..+|..++..... .-++..++..+....++ .++..++..|..+....+
T Consensus 396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 12345666665444 456788888888777653110 12456666666544444 888888877765532111
Q ss_pred cC-----ccchHhHHHHHhhhcCCCccH-HHHHHHHHHHHHHHhhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCC
Q 000166 751 VS-----HLKLKDLIDFCKDTGLQSSAA-ATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTV 822 (1974)
Q Consensus 751 ~~-----~l~~K~lI~~~k~~~L~~sN~-~VR~aAi~Ll~~ly~~~G~~l~~~l--~dlkpall~~Ie~EF~K~~~~~~p 822 (1974)
-. .+--...++.+..+ |.+.+. .||.+|..+|+.+-. |+.-+..+ .+.=|.++..|...-..+..+..-
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~l-L~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~ 552 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhh
Confidence 00 00001234555555 777774 999999999998874 55544444 345577777776543222110000
Q ss_pred CCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHH-cc-cCCCCCCccchHHHH
Q 000166 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE-AN-KRIQPAGTGELFGGL 900 (1974)
Q Consensus 823 ~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~-an-krI~p~~~geL~~aL 900 (1974)
+ .+. -+ +.. +...-.+|..++..+..+... .| ..|.. ...+..|
T Consensus 553 a----------------l~n--q~---~~~----------~~~~~~v~~~a~~aL~~La~~~~~~~~l~~---~~~i~~L 598 (780)
T 2z6g_A 553 G----------------GTQ--QQ---FVE----------GVRMEEIVEACTGALHILARDIHNRIVIRG---LNTIPLF 598 (780)
T ss_dssp -----------------------C---CST----------TCCHHHHHHHHHHHHHHHTTSHHHHHHHHH---TCCHHHH
T ss_pred c----------------ccc--ch---hhc----------ccChHHHHHHHHHHHHHHhcChhhHHHHHH---CCcHHHH
Confidence 0 000 00 000 001122455566666554310 00 01211 2257778
Q ss_pred hhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhh--hhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000166 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1974)
Q Consensus 901 k~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k--~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1974)
...|.+.|.+++..|+.++..++. .+....... ..++.++..+.|....||..|..||..+.....
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 888899999999999999988863 244443322 367889999999999999999999999887554
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-05 Score=88.11 Aligned_cols=179 Identities=18% Similarity=0.171 Sum_probs=138.1
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
+.+...+.+..|..|..|++.|..+.. .+.+..|...+.|.|..|...|+.+++.+.. ...
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~ 82 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 82 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 357788899999999999999987643 3567778888999999999999999988752 356
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhH
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1974)
++.+++.++|..+.||.++..+|-.+.. .+.++.+...+++.+|.||..++.-|.+.- . ...+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-------~~~~ 145 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----D-------ERAV 145 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C-------HHHH
Confidence 8999999999999999988887765532 356788889999999999999888887651 1 2357
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhc
Q 000166 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1974)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~ 502 (1974)
+.+..+++|.++.||.+|..+|+.+-.--.-..+..++.+=++.-|....+.+..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8899999999999999999999987321112335555555566555555665554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-05 Score=86.98 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=134.6
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
+.|.+.+.+..|..|..|++.|..+.. .+.+..|...+.|.|..|...|+.+++.+.. ...
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~ 77 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 77 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 468889999999999999999987643 2456777788889999999999999988742 256
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhH
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1974)
++.+++.+.|..+.||.++..+|-.+.. .+.++.+...+++.+|.||..++..|.+.- . ...+
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-------~~~~ 140 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----D-------ERAV 140 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT----C-------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----C-------HHHH
Confidence 8999999999999999988888776532 357788889999999999999888877651 1 3457
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000166 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1974)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1974)
+.+..+++|.++.||.+|..+|+.+-.--....+..++.+=++.-|....+.+.
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 889999999999999999999998721111123444444445544444444443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-05 Score=88.28 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=137.0
Q ss_pred HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCC
Q 000166 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1974)
Q Consensus 757 K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1974)
...++.+... |.+.|+.||..|+..|+.+. . +
T Consensus 18 ~~~~~~L~~~-L~~~~~~vR~~A~~~L~~~~----~----------------------------~--------------- 49 (211)
T 3ltm_A 18 PEKVEMYIKN-LQDDSYYVRRAAAYALGKIG----D----------------------------E--------------- 49 (211)
T ss_dssp GGGHHHHHHH-TTCSSHHHHHHHHHHHHHHC----C----------------------------G---------------
T ss_pred HhHHHHHHHH-HcCCCHHHHHHHHHHHHHhC----C----------------------------c---------------
Confidence 4556666666 89999999999999887532 1 0
Q ss_pred CCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHH
Q 000166 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1974)
Q Consensus 837 ~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al 916 (1974)
...+.|+..+.|.+|.+|..|+..+..+-. .+.+..|...|.|.|..+...|+
T Consensus 50 ----------------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~ 102 (211)
T 3ltm_A 50 ----------------RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAA 102 (211)
T ss_dssp ----------------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred ----------------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHH
Confidence 013457777888999999999998876531 35677788888999999999988
Q ss_pred HHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHH
Q 000166 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDW 996 (1974)
Q Consensus 917 ~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~w 996 (1974)
..++.+.. ...++.++..|.|..+.||.++..+|..+ |-...++.+...|.++ ++..|..+...
T Consensus 103 ~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~a 166 (211)
T 3ltm_A 103 VALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDE--DGWVRQSAADA 166 (211)
T ss_dssp HHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHH
T ss_pred HHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCC--CHHHHHHHHHH
Confidence 88877632 23568888899999999999999998776 4456677778888755 57888888887
Q ss_pred HHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHH
Q 000166 997 LSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 997 L~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
|.+.- ....+..+...|.|.++.||.+|..+|..+-.
T Consensus 167 L~~~~--------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 167 LGEIG--------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHC--------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHhC--------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 77541 12344456667889999999999998866533
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.034 Score=76.13 Aligned_cols=319 Identities=12% Similarity=0.137 Sum_probs=177.5
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCC------------CCccchhhhccchhhccc----------c-------chhh
Q 000166 649 LPGWSEKNVQVQQQVIEVINYLAATATK------------FPKKCVVLCLLGISERVA----------D-------IKTR 699 (1974)
Q Consensus 649 ~PgwkesNfqV~~k~leil~~la~~~~~------------fs~~~~~~~l~~lveKlg----------D-------~K~r 699 (1974)
.||+...+-.|....++....+++.... .-+.....+++.++.|+. | .-.|
T Consensus 359 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R 438 (971)
T 2x1g_F 359 KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYR 438 (971)
T ss_dssp CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHH
T ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHH
Confidence 5776655666677777766665542100 012233344455555541 1 1356
Q ss_pred hHHHHHHHHHHHhhchHhHHHHHHHhhh---hc-----CChhhHHHHHHHHHHHHHHhccCc-cchHhHHHHHhhhcCC-
Q 000166 700 AHAMKCLTTFSEAVGPGFIFERLYKIMK---DH-----KNPKVLSEGILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQ- 769 (1974)
Q Consensus 700 ~~a~e~L~~~aE~~~p~~V~~~l~~~~~---~~-----KnPKv~ae~l~wl~~ai~eFG~~~-l~~K~lI~~~k~~~L~- 769 (1974)
..+.++|..++...+ +.++..++..+. .+ .+++.+..++-.+..+.+...-.. -.+..++..+.. |.
T Consensus 439 ~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~--l~~ 515 (971)
T 2x1g_F 439 QDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAE--IPY 515 (971)
T ss_dssp HHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHH--SCT
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHh--cCc
Confidence 788899999998776 444444443321 22 688888888877777654333211 123456665554 44
Q ss_pred -CccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcc
Q 000166 770 -SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRE 848 (1974)
Q Consensus 770 -~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRv 848 (1974)
+.+|.||..|+.++|.+..|+++.- .|+..+=|.++..++
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l~-------------------------------------- 556 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGLN-------------------------------------- 556 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH--------------------------------------
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhC--------------------------------------
Confidence 3599999999999999999887532 344333333333331
Q ss_pred ccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc--hhHhHHHHHHHHHHHHHHhc
Q 000166 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAM 926 (1974)
Q Consensus 849 DIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~D--sNk~lv~~al~ii~~lA~am 926 (1974)
.+++..|-..+..++++....|.|-. .+|+..|-.-+.. ........++.+++.++.++
T Consensus 557 ------------------~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 557 ------------------SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp ------------------SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 22355666667777765555566553 6677766666643 33567778889999999988
Q ss_pred C-hhHHhhhhhhhHHHHHHhcc---C---chhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHH------H
Q 000166 927 G-PAVEKSSKGVLSDILKCLGD---N---KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKD------L 993 (1974)
Q Consensus 927 G-~~~~k~~k~l~~~il~~l~D---~---K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e------~ 993 (1974)
+ ..+.+|...++++++..+.. + ...-+..+..+++... .+...+.... .+ .+++ +
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~----------~~~~~l~~~~-~~-~~~~~~~~~~~ 685 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS----------TLFSSLNTDV-DE-QATDQPIVQPV 685 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH----------HHHHHHTC---------------CC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH----------HHHhhcCCCc-Cc-ccccccCCCch
Confidence 7 56778888888888876652 1 1112333444443331 1112222100 00 0000 0
Q ss_pred HHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHh
Q 000166 994 FDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1974)
Q Consensus 994 l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~ 1052 (1974)
...+ ....+++.-++... ..+.+|+..+..+++.++..+|.+ +.+++
T Consensus 686 ~~~~----------~~i~~~l~~~l~~~-~~~~~v~e~~~~~~~~~~~~~~~~-~~p~l 732 (971)
T 2x1g_F 686 LLVM----------QRTMPIFKRIAEMW-VEEIDVLEAACSAMKHAITNLRSS-FQPML 732 (971)
T ss_dssp HHHH----------HTTHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHC---CTHH
T ss_pred HHHH----------HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHhhhhh-ccccH
Confidence 0000 12333333333332 247899999999999999998876 45553
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.01 Score=74.70 Aligned_cols=146 Identities=13% Similarity=0.118 Sum_probs=103.6
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcCCC---
Q 000166 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN--- 400 (1974)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~-y~~~~l~~lLeklKEK-K~~V~eA~~~aLda~~~~~~~~--- 400 (1974)
.+..|-+.+.+.|..+...|+.++..|+..-...-.- .....++++++.++.. .+.++..+..+|-.+... ...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~ 96 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHH
Confidence 4556666777889999999999999999653211000 1236789999999765 678888887887776431 000
Q ss_pred h--hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 401 L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 401 l--~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
+ ...++.+...+++.+|.++.+++..|.......+... ..+. ...+|.++..+.+.++.+|..+..+|..+.
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH-HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH-HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 1356778888999999999999998888765432211 1111 457999999999999999999988887553
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.18 E-value=0.031 Score=76.22 Aligned_cols=348 Identities=11% Similarity=0.078 Sum_probs=209.9
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhcc-ccchhhhHHHHHHHHHHHhhc--hH---hHHHHHHHhhh
Q 000166 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERV-ADIKTRAHAMKCLTTFSEAVG--PG---FIFERLYKIMK 727 (1974)
Q Consensus 654 esNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKl-gD~K~r~~a~e~L~~~aE~~~--p~---~V~~~l~~~~~ 727 (1974)
..|.+.....+-++..+++.+..-.......+++.+..-. .++++|..+..++..|++-.. ++ .|+..++.++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l- 538 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL- 538 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT-
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh-
Confidence 4567777778888888887654322333333444322111 357799999999999998643 33 3455556554
Q ss_pred hcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCC--ccHHHHHHHHHHHHHHHhhhC-chhHhhhhcchH
Q 000166 728 DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKP 803 (1974)
Q Consensus 728 ~~KnPKv~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L~~--sN~~VR~aAi~Ll~~ly~~~G-~~l~~~l~dlkp 803 (1974)
.+|+|+..|+.-+..+.++++-...+ +..++..+-.. +.+ .+..+|......++.+-..+| +....+++.+=+
T Consensus 539 --~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~-l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~ 615 (963)
T 2x19_B 539 --GNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV-LMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLIS 615 (963)
T ss_dssp --TCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-hccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34999999999999999887754333 36777776665 554 467899999999999988887 566677765544
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000166 804 ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE 883 (1974)
Q Consensus 804 all~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ 883 (1974)
.+...++.-. +. +.. ++. -+.+...++.+..++..
T Consensus 616 ~l~~~l~~~~-~~----~~~--------------------------------~~~--------~~~~~~~l~~l~~i~~~ 650 (963)
T 2x19_B 616 PYIQQLEKLA-EE----IPN--------------------------------PSN--------KLAIVHILGLLSNLFTT 650 (963)
T ss_dssp HHHHHHHHHH-SS----CSC--------------------------------HHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hC----CCC--------------------------------HHH--------HHHHHHHHHHHHHHHHH
Confidence 4444443321 11 000 000 01122333333333332
Q ss_pred cccCCCCC---------------------CccchHHHHhhhcc-c-hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHH
Q 000166 884 ANKRIQPA---------------------GTGELFGGLRGRLY-D-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (1974)
Q Consensus 884 ankrI~p~---------------------~~geL~~aLk~Rl~-D-sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~ 940 (1974)
-..++... .+..+++.+..-+. + .|..+...++.+++.++..+|..|.+|.-.+++.
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~ 730 (963)
T 2x19_B 651 LDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEM 730 (963)
T ss_dssp CCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHH
T ss_pred cCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 11111100 01112222222221 1 2347888899999999999999998887777777
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHhccchh----hhHH----HHHH----Hh-cccCCcchHHHHHHHHHHHhccCCC-
Q 000166 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----MVPY----VTTA----LT-DAKLGAEGRKDLFDWLSKQLTGLSG- 1006 (1974)
Q Consensus 941 il~~l~D~K~~vR~aa~~alda~~~~~gl~~----~~~~----i~~~----L~-~~~~~p~~R~e~l~wL~~~l~~~~~- 1006 (1974)
++..+.... -.+.+..+..++...|.+. .++. +... +. +....|+.|.+.+.+|...+..++.
T Consensus 731 l~~~~~~~~---~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~ 807 (963)
T 2x19_B 731 LGRMYSTIP---QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL 807 (963)
T ss_dssp HHHHHHHSC---CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHcCC---ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH
Confidence 776665421 1256666777766434332 2222 1221 11 2223589999999999988876654
Q ss_pred ---Ccc-hhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcC-HHHHHHHhh
Q 000166 1007 ---FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG-QETIEKNLK 1053 (1974)
Q Consensus 1007 ---~~~-~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G-~~~~~~~~~ 1053 (1974)
++. ...++.-+..+|.+...+|-+++-.++..++...+ .+.+...+.
T Consensus 808 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 859 (963)
T 2x19_B 808 FLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQ 859 (963)
T ss_dssp GGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTT
T ss_pred HcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 233 55556667778999999999999999999988765 334444333
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.12 E-value=0.1 Score=71.17 Aligned_cols=212 Identities=15% Similarity=0.220 Sum_probs=142.4
Q ss_pred hhhHHHHHHHHHHHhhch---HhHHHHHHHhhh---hcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCC
Q 000166 698 TRAHAMKCLTTFSEAVGP---GFIFERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS 770 (1974)
Q Consensus 698 ~r~~a~e~L~~~aE~~~p---~~V~~~l~~~~~---~~KnPKv~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L~~ 770 (1974)
.|..+.++|..++...+. .++++.+...+. .+.+++.+..++-+++.+.+...-..-+ +..++..+.. +.+
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~--l~~ 500 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR--ISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG--SCC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--CCC
Confidence 367788899999987763 233333333321 4568888888887777766543321111 2456665553 565
Q ss_pred ccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccc
Q 000166 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 850 (1974)
Q Consensus 771 sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDI 850 (1974)
.+|.||..++.++|..-.|+++.- .++..
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~-------------------------------------------------- 529 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHP-VMINS-------------------------------------------------- 529 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCH-HHHTT--------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCH-HHHHH--------------------------------------------------
Confidence 799999999999999888775321 22211
Q ss_pred ccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc--chhHhHHHHHHHHHHHHHHhcC-
Q 000166 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMG- 927 (1974)
Q Consensus 851 s~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~--DsNk~lv~~al~ii~~lA~amG- 927 (1974)
+-+.++..|.+ -++|..|..++..++++..+.+.|-. .+|+..|-.-+. +.+.......+.+++.++.+++
T Consensus 530 ---vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~ 603 (963)
T 2x19_B 530 ---VLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV 603 (963)
T ss_dssp ---THHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred ---HHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence 11234444443 36788899999999988767788875 888888877664 3455677888999999999998
Q ss_pred hhHHhhhhhhhHHHHHHhcc---C--chhHH---HHHHHHHHHHHHhcc
Q 000166 928 PAVEKSSKGVLSDILKCLGD---N--KKHMR---ECTLTVLDAWLAAVH 968 (1974)
Q Consensus 928 ~~~~k~~k~l~~~il~~l~D---~--K~~vR---~aa~~alda~~~~~g 968 (1974)
..+.+|...++++++..+.. + .+..+ ...+++|..++..++
T Consensus 604 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 604 EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 77889999999999887752 1 22233 355666666666654
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0086 Score=82.08 Aligned_cols=284 Identities=12% Similarity=0.127 Sum_probs=174.9
Q ss_pred hHHHHHHHhhhhc--CChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhh----
Q 000166 717 FIFERLYKIMKDH--KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFV---- 790 (1974)
Q Consensus 717 ~V~~~l~~~~~~~--KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~---- 790 (1974)
|+..++++.+... .+|.++..++..+++.-+.|. .-.+..++..+-.+ |.+.|+.||.+|...+..+-...
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~l~~~l~~l~~~-L~d~~~~V~~~A~~Al~~~~~~~~~~~ 531 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQLIELMPILATF-LQTDEYVVYTYAAITIEKILTIRESNT 531 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBSCSS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhcccccc
Confidence 3445566665332 289999999988887766552 12356777777775 99999999999999888765432
Q ss_pred -------CchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcC
Q 000166 791 -------GPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 863 (1974)
Q Consensus 791 -------G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~ 863 (1974)
...+.+|+. .+++.|-.-+.+... .|.
T Consensus 532 ~~~~~~~~~~l~p~l~----~ll~~L~~ll~~~~~----~~~-------------------------------------- 565 (960)
T 1wa5_C 532 SPAFIFHKEDISNSTE----ILLKNLIALILKHGS----SPE-------------------------------------- 565 (960)
T ss_dssp SCCBSSCGGGTTTTHH----HHHHHHHHHHHTTCC----CHH--------------------------------------
T ss_pred cccccccHHHhhhhHH----HHHHHHHHHHHhccC----CCC--------------------------------------
Confidence 223445553 344444444443210 000
Q ss_pred CCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-----chhHhHHHHHHHHHHHHHHhcCh-hHHhhhhhh
Q 000166 864 SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-----DSNKNLVMATLITLGAVASAMGP-AVEKSSKGV 937 (1974)
Q Consensus 864 d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~-----DsNk~lv~~al~ii~~lA~amG~-~~~k~~k~l 937 (1974)
+-++.-..++.+..++.....-+.|- +..|+..|..++. .+|+.+...++.+++.++.+.|+ .+.++...+
T Consensus 566 --~~~~~e~l~~al~~vv~~~~~~~~p~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~ 642 (960)
T 1wa5_C 566 --KLAENEFLMRSIFRVLQTSEDSIQPL-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSM 642 (960)
T ss_dssp --HHTSCHHHHHHHHHHHHHHTTTTGGG-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred --cccccHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 00011256788888887666677774 3677777777763 35788888899999999999876 567888899
Q ss_pred hHHHHHHhccCchhHHHHHHHHHHHHHHhc-cchhhhHHHHHHHhcccC--CcchHHHHHHHHHHHhccCCCC-cchhhh
Q 000166 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAV-HLDKMVPYVTTALTDAKL--GAEGRKDLFDWLSKQLTGLSGF-PDAAHL 1013 (1974)
Q Consensus 938 ~~~il~~l~D~K~~vR~aa~~alda~~~~~-gl~~~~~~i~~~L~~~~~--~p~~R~e~l~wL~~~l~~~~~~-~~~~~~ 1013 (1974)
+|.+...|......++..+.+.+....... ++.+.+..+...|-++.. ++.--..+...|...+...... .....+
T Consensus 643 ~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 722 (960)
T 1wa5_C 643 MPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPV 722 (960)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHH
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHH
Confidence 999999998777778888888888777664 333333333333321110 0111123344443332221110 001222
Q ss_pred hhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhc
Q 000166 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1054 (1974)
Q Consensus 1014 ~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~ 1054 (1974)
+.-+-.++.+++.+ ..|..+++.++.++|.+.+.+++..
T Consensus 723 l~~~~~~~~~~~~~--~~a~~ll~~i~~~~~~~~~~~yl~~ 761 (960)
T 1wa5_C 723 LGIFQRLIASKAYE--VHGFDLLEHIMLLIDMNRLRPYIKQ 761 (960)
T ss_dssp HHHHHHHHTCTTTH--HHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred HHHHHHHhCCCccc--chHHHHHHHHHHHCCHHHHHHHHHH
Confidence 22233456777644 7889999999999998877666543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.7e-05 Score=83.43 Aligned_cols=182 Identities=20% Similarity=0.172 Sum_probs=133.0
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000166 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (1974)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1974)
...+.+++.++|++|.+|..|++.+..+-. .+.+..|...|.|.|..+...|+..++.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 346788999999999999999999976431 3567788888899999999999988877632
Q ss_pred hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhh
Q 000166 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1974)
Q Consensus 933 ~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~ 1012 (1974)
...++.++..|.|..+.||.+++.+|..+ |-...++.+...|.++ ++..|..+...|.+. . ...
T Consensus 75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~ 138 (201)
T 3ltj_A 75 --ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DER 138 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-T-------CGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh-C-------CHH
Confidence 24578899999999999999999999875 4455778888888765 688899888887653 1 123
Q ss_pred hhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHh
Q 000166 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL 1069 (1974)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k 1069 (1974)
.+..+...|.|.++.||..|..+|+.+-..-..+.+...+++=.+..+....+.|.+
T Consensus 139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 139 AVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 555678889999999999999999877211112233333333334444444444444
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00015 Score=94.69 Aligned_cols=400 Identities=14% Similarity=0.104 Sum_probs=228.8
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchh
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~ 683 (1974)
.++.+.|.+.+=..|..++..+.-..-...+.....--+++.+. .+|+..=+.+.=.+..++.. ..-.+-
T Consensus 37 ~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~------s~~~~~Krl~Yl~~~~~~~~----~~e~~~ 106 (618)
T 1w63_A 37 AAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIA------SQKFTDKRIGYLGAMLLLDE----RQDVHL 106 (618)
T ss_dssp HHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHH------SSSHHHHHHHHHHHHHHCCC----CHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHc------CCchHHHHHHHHHHHHHhCC----CcHHHH
Confidence 35556676666666777777776433222111111222334432 45555544444444433321 222234
Q ss_pred hhccchhhccccc--hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHH
Q 000166 684 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1974)
Q Consensus 684 ~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~ 761 (1974)
++++.+..-+.|. -.|..|-.+|..+....-.+.++..+.+. ..+.+|-|+..++..+..+..... .. +..+++
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~-L~~~~~~VRk~A~~al~~l~~~~p-~~--v~~~~~ 182 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKL-LKTSNSYLRKKAALCAVHVIRKVP-EL--MEMFLP 182 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHSCCHHHHHHHHHHHHHHHHHCG-GG--GGGGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHCh-HH--HHHHHH
Confidence 5666666555553 35666555555444322223445566655 478999999999999999987543 22 347788
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccccc-ccCcCCCCC-
Q 000166 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA-SESTSSVSS- 839 (1974)
Q Consensus 762 ~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~-~~~~~~~~~- 839 (1974)
.+..+ |.+.|+.|+.+|+.+|+.+...- +.+...+..+=|.+...|..-... +..+ .....+ .++-....-
T Consensus 183 ~l~~l-L~D~d~~V~~~Al~~L~~i~~~~-~~~~~~~~~~v~~l~~~L~~~~~~--~~~~---~~~~~~~~~~~~q~~il 255 (618)
T 1w63_A 183 ATKNL-LNEKNHGVLHTSVVLLTEMCERS-PDMLAHFRKLVPQLVRILKNLIMS--GYSP---EHDVSGISDPFLQVRIL 255 (618)
T ss_dssp GTTTS-TTCCCHHHHHHHHHHHHHHCCSH-HHHHHHHHTTHHHHHHHHHHHHHS--CCCT---TTCSSSSSCHHHHHHHH
T ss_pred HHHHH-hCCCCHhHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHcC--CCCc---cccccCCCCChHHHHHH
Confidence 88888 99999999999999999986542 223334445556666665542221 0000 000000 000000000
Q ss_pred CCCCCCCccc--cccCCcHHHHhhc-------CCCChHHHHHHHHHHHHHHHHcccCCCCCC--ccchHHHHhhhccchh
Q 000166 840 GGSDGLPRED--ISGKFTPTLVKSL-------ESPDWKVRLESIEAVNKILEEANKRIQPAG--TGELFGGLRGRLYDSN 908 (1974)
Q Consensus 840 ~~~d~lpRvD--Is~kit~~l~~~l-------~d~~WK~RkEaLe~v~~il~~ankrI~p~~--~geL~~aLk~Rl~DsN 908 (1974)
..-..+.+.| ...++- +++..+ ...+--+..|+...+ +. +.+.. .......|..-+.+++
T Consensus 256 ~~L~~l~~~~~~~~~~~~-~~L~~l~~~~~~~~~~~~aV~~ea~~~i---~~-----l~~~~~l~~~a~~~L~~~L~~~d 326 (618)
T 1w63_A 256 RLLRILGRNDDDSSEAMN-DILAQVATNTETSKNVGNAILYETVLTI---MD-----IKSESGLRVLAINILGRFLLNND 326 (618)
T ss_dssp HHHHHHTTTCHHHHHTTH-HHHHHHHHTSCCSSTHHHHHHHHHHHHH---HH-----SCCCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHhCCCCHHHHHHHH-HHHHHHHhccccccchHHHHHHHHHHHH---Hh-----cCCCHHHHHHHHHHHHHHHhCCC
Confidence 0000000000 111111 122221 122334555554444 32 22211 1123556666678888
Q ss_pred HhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcc
Q 000166 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE 988 (1974)
Q Consensus 909 k~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~ 988 (1974)
.++.-.||..++.++..-...|. ...+.|+.+|.|.-..||..++++|...+....++.+++.+..++.+. +++
T Consensus 327 ~~vr~~aL~~L~~i~~~~p~~~~----~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~--d~e 400 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQTDHNAVQ----RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSC--EPE 400 (618)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHG----GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHC--CHH
T ss_pred CchHHHHHHHHHHHHhhCHHHHH----HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhC--CHH
Confidence 89999999999999976433333 355688999999999999999999999999988999999999999854 578
Q ss_pred hHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHH
Q 000166 989 GRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 989 ~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
.|.++..+|.+.-.... ++....+.-++..|.+....|+..+-.++-.++.
T Consensus 401 ~r~~~v~~I~~la~k~~--~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~ 451 (618)
T 1w63_A 401 FKADCASGIFLAAEKYA--PSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLIT 451 (618)
T ss_dssp HHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 99999999987765543 2333334446666777666666654444444444
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.11 Score=71.07 Aligned_cols=283 Identities=9% Similarity=0.048 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHHHHHHhhc-------------h----H
Q 000166 656 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVG-------------P----G 716 (1974)
Q Consensus 656 NfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~-------------p----~ 716 (1974)
+..|....+.++..+++. +.+.....+++.++..+.|. .++..|..+|..|+|... . .
T Consensus 471 ~p~vr~~a~~~lg~~~~~---~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQ---LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (960)
T ss_dssp CHHHHHHHHHHHHHTGGG---SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred CceehHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH
Confidence 888888888888877663 34555666778888877774 578999999999998421 1 2
Q ss_pred hHHHHHHHhhhhcCC---hh--hHHHHHHHHHHHHHHhccCccc-hHhHHHHH----hhhcCCCccHHHHHHHHHHHHHH
Q 000166 717 FIFERLYKIMKDHKN---PK--VLSEGILWMVSAVEDFGVSHLK-LKDLIDFC----KDTGLQSSAAATRNATIKLLGAL 786 (1974)
Q Consensus 717 ~V~~~l~~~~~~~Kn---PK--v~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~----k~~~L~~sN~~VR~aAi~Ll~~l 786 (1974)
-+++.++..+ +.-+ ++ .....+..|..++..++-...+ ...++..+ ...+=...|+..+.....+++.+
T Consensus 548 ~ll~~L~~ll-~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l 626 (960)
T 1wa5_C 548 ILLKNLIALI-LKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626 (960)
T ss_dssp HHHHHHHHHH-HTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 2334444433 2211 33 3445666677777767644333 23344333 32211346889998899999999
Q ss_pred HhhhCchh-HhhhhcchHHHHHHHHHHHhcCCCCCCCCCc---cccccccCcCCCCCCCCCCCCccccccCCcHHHH--h
Q 000166 787 HKFVGPDI-KGFLADVKPALLSALDAEYEKNPFEGTVVPK---KTVRASESTSSVSSGGSDGLPREDISGKFTPTLV--K 860 (1974)
Q Consensus 787 y~~~G~~l-~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~---R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~--~ 860 (1974)
-+..|+.. ..+.+.+=|.+...++..-... -|..-. .-++.. +.++. ...++-+-++ +
T Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~---~~~~~~i~~~l~~~~-----------~~~~~--~~~~~~~~l~~~~ 690 (960)
T 1wa5_C 627 LNYTQRQNLPLLVDSMMPTFLTVFSEDIQEF---IPYVFQIIAFVVEQS-----------ATIPE--SIKPLAQPLLAPN 690 (960)
T ss_dssp HHTSCGGGHHHHHHHHHHHHHHHHHTTCTTT---HHHHHHHHHHHHHHC-----------SSCCT--TTGGGHHHHTSGG
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHHhhhHhh---HHHHHHHHHHHHHhc-----------cCCCH--HHHHHHHHHcCHH
Confidence 99877653 3444555566555554210000 000000 000000 00110 0111111121 1
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChh-HHhhhhhhhH
Q 000166 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLS 939 (1974)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~-~~k~~k~l~~ 939 (1974)
-++...|= -..+..+..++......|-. ...++..+.+.+.+.+ .-..++.+++.++..+|.. |.+|...+++
T Consensus 691 ~~~~~~~~--~~~~~~L~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~ 764 (960)
T 1wa5_C 691 VWELKGNI--PAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQIAV 764 (960)
T ss_dssp GGCCTTTH--HHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHHHHH
T ss_pred HhcCCCCc--hhHHHHHHHHHHhChHHHHH--HHHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 11112221 23445555555432222222 1345555655554433 2378999999999999999 9999999999
Q ss_pred HHHHHhccCc-hhHHHHHHHHHHHHH
Q 000166 940 DILKCLGDNK-KHMRECTLTVLDAWL 964 (1974)
Q Consensus 940 ~il~~l~D~K-~~vR~aa~~alda~~ 964 (1974)
.++..|...| ..+|.+.+..+...+
T Consensus 765 ~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 765 LLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 9999997765 445544444444443
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00025 Score=82.45 Aligned_cols=229 Identities=15% Similarity=0.073 Sum_probs=128.7
Q ss_pred ccchhhcccc--chhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHH
Q 000166 686 LLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1974)
Q Consensus 686 l~~lveKlgD--~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~ 763 (1974)
++.++.-+.| ..+|..+..+|..+. ..-++..+... ..+.+|.++..++..|. .+|...-.+..+++.+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~~~~~~L~~~-l~d~~~~vR~~A~~aL~----~l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEF-CSDKNYIRRDIGAFILG----QIKICKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHH-HTCSSHHHHHHHHHHHH----HSCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----CchHHHHHHHH-HcCCCHHHHHHHHHHHH----HhccccccchHHHHHH
Confidence 3445555554 356666666666554 23456666665 46889999988886554 4554333355677777
Q ss_pred hhhcCCCccHHHHHHHHHHHHHHHhhhC-------chhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCC
Q 000166 764 KDTGLQSSAAATRNATIKLLGALHKFVG-------PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1974)
Q Consensus 764 k~~~L~~sN~~VR~aAi~Ll~~ly~~~G-------~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1974)
...++.+.|+.||..|+..|+.+....+ +.|...+.|-.+......=.-+.+...
T Consensus 96 ~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------------------ 157 (280)
T 1oyz_A 96 NNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------------------ 157 (280)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------------------
Confidence 6423789999999999999998864321 111122222222111111111111100
Q ss_pred CCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHH
Q 000166 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1974)
Q Consensus 837 ~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al 916 (1974)
...-+.|+.-+.|++|.+|..|+..+..+- ... .+.+..|...+.|.|..+...|+
T Consensus 158 ---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~-~~~~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 158 ---------------KATIPLLINLLKDPNGDVRNWAAFAININK--------YDN-SDIRDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp ----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT--------CCC-HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc--------cCc-HHHHHHHHHHhcCCCHHHHHHHH
Confidence 012344666667777777777777765441 111 45566666667777777776666
Q ss_pred HHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 917 ~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
..++.+. ....++.++..|.|.. ||.++..+|..+ |-...++.+...|.
T Consensus 214 ~aL~~~~----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i----~~~~~~~~L~~~l~ 262 (280)
T 1oyz_A 214 IGLSYRK----------DKRVLSVLCDELKKNT--VYDDIIEAAGEL----GDKTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHTT----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHH----CCGGGHHHHHHHHT
T ss_pred HHHHHhC----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhc----CchhhhHHHHHHHh
Confidence 6666553 1235566666666643 666666666554 33455666666655
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.026 Score=73.78 Aligned_cols=102 Identities=11% Similarity=0.071 Sum_probs=66.6
Q ss_pred hhhhHHHHHHHhc-cCC---HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000166 364 SRFLLPVLLEKLK-EKK---PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1974)
Q Consensus 364 ~~~~l~~lLeklK-EKK---~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1974)
+..-+..|=..|+ +++ ..-++++...+-.+.. | -......-++...+.++++..|.-...++..+++..+ .
T Consensus 33 i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~-G-~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~--e- 107 (621)
T 2vgl_A 33 INKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL-G-HDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS--E- 107 (621)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHH-S-CCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH--H-
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc-C-CCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc--H-
Confidence 3333444445555 322 1234566665554443 3 3444566777788999999999888888887775432 1
Q ss_pred hHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000166 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 440 ~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1974)
++--++..+.+-++|+++-+|-.|..+|+.+
T Consensus 108 --~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i 138 (621)
T 2vgl_A 108 --LIRLINNAIKNDLASRNPTFMGLALHCIANV 138 (621)
T ss_dssp --HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc
Confidence 1234577888899999999999988888876
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00073 Score=86.09 Aligned_cols=374 Identities=11% Similarity=0.119 Sum_probs=217.5
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhh--hccch-----hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~--~~~~~-----~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~ 676 (1974)
++++++|.|.|-..+++|...+.+.+... ++.+. ....||++|. .+.|..++....-+|..++...+.
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~-----~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCHH
Confidence 67889999999999999999998877542 11111 1234555553 345778888888888888753211
Q ss_pred CCccch-hhhccchhhcccc--chhhhHHHHHHHHHHHhh--chHhH-----HHHHHHhhhhcCC----hhhHHHHHHHH
Q 000166 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAV--GPGFI-----FERLYKIMKDHKN----PKVLSEGILWM 742 (1974)
Q Consensus 677 fs~~~~-~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~--~p~~V-----~~~l~~~~~~~Kn----PKv~ae~l~wl 742 (1974)
..+..+ .-.++.++.-+.+ ..++..+..+|..++.-. .-..| +..++..+..... ..++..++..+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 111111 1245666665554 578888888888887421 12222 2234444322111 12222222222
Q ss_pred HHHHHHhccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCC
Q 000166 743 VSAVEDFGVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (1974)
Q Consensus 743 ~~ai~eFG~~---~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~ 819 (1974)
+... ..... ...+..++..+..+ |.+.++.|+..|...|..+-. ++ +.....+ ..
T Consensus 215 ~nl~-~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~A~~aL~~L~~--~~----------~~~~~~i----~~---- 272 (510)
T 3ul1_B 215 SNLC-RNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTD--GP----------NERIEMV----VK---- 272 (510)
T ss_dssp HHHH-CCCSSCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTS--SC----------HHHHHHH----HT----
T ss_pred HHHh-hcccchhHHHHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHHhh--ch----------hhhHHHH----Hh----
Confidence 2222 21111 12346788888888 999999999999887755432 11 1111100 00
Q ss_pred CCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHH
Q 000166 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFG 898 (1974)
Q Consensus 820 ~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~ 898 (1974)
..+-+.|+.-+.+.++.+|..++..+..|+... ...+... -...+.
T Consensus 273 --------------------------------~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~ 319 (510)
T 3ul1_B 273 --------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALA 319 (510)
T ss_dssp --------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGG
T ss_pred --------------------------------cccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchH
Confidence 012345777788999999999999999887421 1100000 012455
Q ss_pred HHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh-hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch-------
Q 000166 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD------- 970 (1974)
Q Consensus 899 aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k-~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~------- 970 (1974)
.|..-|.+.+..+...|+.+++.|+.+-...... .-..++|.++..|.+....+|..|..||..+......+
T Consensus 320 ~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~ 399 (510)
T 3ul1_B 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399 (510)
T ss_dssp GCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 6677778899999999999999997543221211 13468899999999999999999999987766543222
Q ss_pred -hhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC---CCCcchhhh------hhhHhhhccCCChHHHHHHHHHHHHH
Q 000166 971 -KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL---SGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 971 -~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~---~~~~~~~~~------~~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
.+++.+...|.++ ++..+..++.-|..-|... .....+..+ +.-+-....+.|.+|++.|..+|..+
T Consensus 400 ~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 400 CGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp TTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2344555556543 4666666666555433221 111111111 11223334677888888887776443
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.019 Score=72.30 Aligned_cols=183 Identities=11% Similarity=0.018 Sum_probs=119.4
Q ss_pred HHHhhcC-CCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh-h
Q 000166 857 TLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-S 934 (1974)
Q Consensus 857 ~l~~~l~-d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~-~ 934 (1974)
.++.-+. +.+|.+|..|+..+..+......+-.-.. ...+..|-..|.+.+..++..|+.++..++..-...-... .
T Consensus 63 ~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 141 (529)
T 1jdh_A 63 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 141 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3555553 34899999999999887532111100000 2356677788888899999999999999998754332222 2
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-------cchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC
Q 000166 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1974)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-------gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~ 1007 (1974)
...+|.++..|.+....+|..+..+|..|.... .-...++.+...|.+. +++.+.+....+...+...+..
T Consensus 142 ~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~--~~~~~~~~a~~~L~~l~~~~~~ 219 (529)
T 1jdh_A 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLKVLSVCSSN 219 (529)
T ss_dssp HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSTTH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC--ChHHHHHHHHHHHHHHhcCccc
Confidence 468999999999999999999999998776421 1113355666667654 3444554444444455543321
Q ss_pred cc-h--hhhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 1008 PD-A--AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 1008 ~~-~--~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
.. . ...+.+++..|.+.+.++|..+-.+|..+...
T Consensus 220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Confidence 11 1 23466688889999999999988877766543
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=97.77 E-value=0.002 Score=82.45 Aligned_cols=375 Identities=11% Similarity=0.139 Sum_probs=220.9
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhh--hccc-----hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~--~~~~-----~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~ 676 (1974)
++++.++.+.|-..+++|+..+.+.+... ++.+ .....||++|. .+.|..++.....+|..++...+.
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~-----~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHcCCHH
Confidence 57789999999999999999998776441 1111 11234566653 356788888888888888753211
Q ss_pred CCccch-hhhccchhhccc--cchhhhHHHHHHHHHHHh--hchHhHH-----HHHHHhhhhcCChhhHHHHHHHHHHHH
Q 000166 677 FPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEA--VGPGFIF-----ERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1974)
Q Consensus 677 fs~~~~-~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~--~~p~~V~-----~~l~~~~~~~KnPKv~ae~l~wl~~ai 746 (1974)
..+..+ .-+++.++.-+. +..++..|..+|..++.. ..-..|+ ..++..+............+...+.++
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 111111 124555655444 356788888888888742 1122232 234444322222222222222222233
Q ss_pred HHh---ccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCC
Q 000166 747 EDF---GVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1974)
Q Consensus 747 ~eF---G~~---~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~ 820 (1974)
..+ ... ...+..++..+-.+ |.+.++.|+..|...|..+-. ++ +.....+- .
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~--~~----------~~~~~~v~----~----- 291 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTD--GP----------NERIEMVV----K----- 291 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHS--SC----------HHHHHHHH----T-----
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhh--hh----------hhhHHHHH----h-----
Confidence 222 111 12346788888888 999999999999877754432 11 11100000 0
Q ss_pred CCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHHH
Q 000166 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 899 (1974)
Q Consensus 821 ~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~a 899 (1974)
..+-+.|+.-+.+.++.++..++..|..|+... ...+... -...+..
T Consensus 292 -------------------------------~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 292 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 339 (529)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------ccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHH
Confidence 002345777788999999999999999887421 1100000 0224567
Q ss_pred HhhhccchhHhHHHHHHHHHHHHHHhcChhHHh-hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch--------
Q 000166 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 970 (1974)
Q Consensus 900 Lk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k-~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~-------- 970 (1974)
|..-|.+.+..+...|+.+++.|+.+-...... .-..++|.++..|.+....+|..|..||..+......+
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 777788889999999999999998643222221 13468999999999999999999999887766543322
Q ss_pred hhhHHHHHHHhcccCCcchHHHHHHHHHHHhcc---CCCCcchhhh------hhhHhhhccCCChHHHHHHHHHHHHH
Q 000166 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 971 ~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~---~~~~~~~~~~------~~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
.+++.+...|.++ ++..+.-+|.-|..-|.. ......+..+ +.-+-....+.|.+|++.|..+|..+
T Consensus 420 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 420 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2344556666643 566777776666544421 1111111111 12233345678889999888877654
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00039 Score=80.83 Aligned_cols=162 Identities=15% Similarity=0.053 Sum_probs=121.6
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHH-HhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk-~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
.+...+.+..|..|..|+..|..+... +.....++..|.. .+.|.|..|...|+.+++.++.+.. .+...+
T Consensus 58 ~L~~~l~d~~~~vR~~A~~aL~~l~~~----~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~ 129 (280)
T 1oyz_A 58 LAIEFCSDKNYIRRDIGAFILGQIKIC----KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKI 129 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHSCCC----TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHH
Confidence 466677888999999999888766432 2235567777775 4569999999999999999876542 345678
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhH
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1974)
++.++..++|..+.||.++..+|-.+.. .+.++.+...+++.+|.||..++.-|.+. .... ...+
T Consensus 130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~~~--------~~~~ 194 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRATAFAISVIND------KATIPLLINLLKDPNGDVRNWAAFAININ-KYDN--------SDIR 194 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHHHHHHHHHHHH-TCCC--------HHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh-ccCc--------HHHH
Confidence 8999999999999999877777654432 34677888889999999998888777653 2111 3457
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
+.+...++|.++.||..|..+|+.+-
T Consensus 195 ~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 195 DCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 88889999999999999999988753
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0044 Score=81.07 Aligned_cols=397 Identities=14% Similarity=0.094 Sum_probs=209.1
Q ss_pred hhcCCCccccc--CCCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhh
Q 000166 10 EAKKLPWEDRL--LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA 87 (1974)
Q Consensus 10 ~~~~Lpl~erL--~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~ 87 (1974)
+.---++..-| .|.++-.|..|.-.+.+.|+...+-- ....+.+.+.+.+.|+|..++..++-++..+.......+
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~--~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~ 222 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV--PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF 222 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC--CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc--CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH
Confidence 44556777788 99999999999999999997421110 001356667788999999999999998887766542211
Q ss_pred hhhhhHHHHHHHhhhhcC--------------ChhhHHHHHHHHHHHHhhchhh---h---HHHHHHH---------Hhh
Q 000166 88 GRYAKEVCDAIAAKCLTG--------------RPKTVEKAQAVFMLWVELEAVD---V---FLDVMEK---------AIK 138 (1974)
Q Consensus 88 ~~~~~~v~~~lveK~L~~--------------r~ktk~~a~e~~l~~vE~e~~~---~---v~e~ll~---------~~~ 138 (1974)
.......+. +..+.+.. .+=.+-+.++++..|...++++ . +++.++. .+.
T Consensus 223 ~~~~~~~~~-~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 223 KTSVSLAVS-RLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp TTHHHHHHH-HHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHH-HHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccc
Confidence 111111111 11122211 1223333444444444322221 2 2222332 234
Q ss_pred ccCc--hhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHH
Q 000166 139 NKVA--KAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1974)
Q Consensus 139 ~K~P--Kvvaaai~~l~~~l~~FG~kvv~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q 216 (1974)
|+|+ =|+-+|+.++..+ +..---.+..+..|-+++.++|+++|=-|..-+..+-.--+ + . ..+ ....+.
T Consensus 302 ~~n~~~aVl~ea~~~i~~l----~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~-~-~-~~~-~~~~~~- 372 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHH----DSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEF-S-H-EAV-KTHIET- 372 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT-T-H-HHH-HTTHHH-
T ss_pred ccchHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC-c-H-HHH-HHHHHH-
Confidence 5565 7777887777553 32100134466777788888999999887766665542211 1 0 111 111111
Q ss_pred HHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcc---cccCCCCchhhhhh
Q 000166 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV---DILTPLEKSGFWEG 293 (1974)
Q Consensus 217 ~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pv---dIl~klpk~~f~~~ 293 (1974)
-|.-+... +-+.+|...-. . -|.++++. .|+. .+.+-
T Consensus 373 ------i~~~L~~d--~d~~Ir~~aL~-l--------------------------L~~l~~~~Nv~~Iv~-----eL~~y 412 (621)
T 2vgl_A 373 ------VINALKTE--RDVSVRQRAVD-L--------------------------LYAMCDRSNAQQIVA-----EMLSY 412 (621)
T ss_dssp ------HHHHHTTC--CCHHHHHHHHH-H--------------------------HHHHCCHHHHHHHHH-----HHHHH
T ss_pred ------HHHHhccC--CCHhHHHHHHH-H--------------------------HHHHcChhhHHHHHH-----HHHHH
Confidence 11111101 11233322110 0 01111111 2222 33344
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLe 373 (1974)
+.+..-.-|.+++..+..++. |+ +.++.-.+..|-+++.+.+-.++...+..+-.+... .+.+..| .+..+++
T Consensus 413 l~~~d~~~~~~~v~~I~~la~--k~-~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~-~~~~~~~---~~~~l~~ 485 (621)
T 2vgl_A 413 LETADYSIREEIVLKVAILAE--KY-AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN-RDDVQGY---AAKTVFE 485 (621)
T ss_dssp HHHCCHHHHHHHHHHHHHHHH--HH-CSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG-GCSCHHH---HHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHH--hc-CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC-ChhHHHH---HHHHHHH
Confidence 444555667777777666542 11 245677777777777755555666665555555432 1334444 2445566
Q ss_pred HhccCCHHHHHHH-HHHHHHHHHhcC-------CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhh
Q 000166 374 KLKEKKPTVAESL-TQTLQAMHKAGC-------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1974)
Q Consensus 374 klKEKK~~V~eA~-~~aLda~~~~~~-------~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~ 445 (1974)
-+.|-.. .+++ ..|+=-+.+|+. .+..++++.+...+..-++.+|..++.-+.+.+...+. . ...
T Consensus 486 ~l~~~~~--~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~---~~~ 558 (621)
T 2vgl_A 486 ALQAPAC--HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--V---KAT 558 (621)
T ss_dssp HHTSSSC--CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--G---HHH
T ss_pred HHcCccc--hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--H---HHH
Confidence 6665432 1122 223333344411 11235566676677788899999999999888765432 1 122
Q ss_pred hHHHHHhhhC--CCCHHHHHHHHHHHHHH
Q 000166 446 YVPICMECLN--DGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 446 ~~~~l~k~l~--Ds~~~VR~aA~~~l~~l 472 (1974)
+...+-.+.+ |.+.|||+-|.+.+.-+
T Consensus 559 i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 559 IQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3334444555 99999999999765543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00019 Score=79.43 Aligned_cols=183 Identities=13% Similarity=0.117 Sum_probs=134.8
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhc-CCCCCC-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc-chh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 365 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~-pKi~~~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~-y~~ 365 (1974)
-+..-+.+..|..|.+|+..|..+... +..... --...+..|-..+.+.|..+...|+.+++.|+.+-...-.. ...
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 467778999999999999999998742 211000 00135778888899889999999999999998543211111 124
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-h-----hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000166 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1974)
Q Consensus 366 ~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~-l-----~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1974)
..+|.++.-+++..+.|+..+..+|-.+... ... . ..+++.+...+++.++.++..++..|.......+. ..
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~ 173 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QK 173 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-HH
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH-HH
Confidence 5899999999999999999999998888642 100 1 13567788899999999999999888877764322 11
Q ss_pred hHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 440 ~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
..+. ...++.++.++.+.+++||+.|..+|..|.
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 1222 347899999999999999999999998763
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.021 Score=76.37 Aligned_cols=636 Identities=13% Similarity=0.094 Sum_probs=357.2
Q ss_pred HHHHHHHHHHHhhh----cCCCCCCChhHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhccccccchh-hhHHHHHHH
Q 000166 301 ERKDAVAELTKLAS----TKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLLEK 374 (1974)
Q Consensus 301 eRkEALe~L~~L~~----~pKi~~~dy~dL~~~Lkk~l~D-sNv~vv~~A~~~i~~LA~gLr~~F~~y~~-~~l~~lLek 374 (1974)
.|.-|+..|..|.. .-+|...+ -+..|.+++.. .|--++..|++++..|++|=+..-..-.+ .=.|-++.-
T Consensus 24 ~~~~a~~nl~vl~re~aga~~i~~~~---~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 100 (810)
T 3now_A 24 KRRAAANNLVVLAKEQTGAELLYKDH---CIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRV 100 (810)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHhhceeeeccccchHHHHhCc---hHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHH
Confidence 34458888777764 23443322 25566677765 78999999999999999986543222211 224556666
Q ss_pred hccCCHHHHHHHHHHHHHHHHhc--CC-----------------ChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHHhh
Q 000166 375 LKEKKPTVAESLTQTLQAMHKAG--CL-----------------NLVDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIET 433 (1974)
Q Consensus 375 lKEKK~~V~eA~~~aLda~~~~~--~~-----------------~l~~~~e~i~~al~~Kn--P~vk~etl~~L~r~l~~ 433 (1974)
+.-+...++.|+.-++..++... .. .++.++..+...+.+++ ...|-.+++.|.|.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (810)
T 3now_A 101 LDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHY 180 (810)
T ss_dssp HHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCc
Confidence 66677778888888888887751 11 13344555666777766 79999999999999965
Q ss_pred CChhHHh--H---hhhhhHHHHHhhhCCC--------CHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH
Q 000166 434 SSKAAVL--K---VHKDYVPICMECLNDG--------TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1974)
Q Consensus 434 ~~~~~~~--~---~~k~~~~~l~k~l~Ds--------~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1974)
....... . =++.++... ..+.+. .++.|-.+.-|+..++.-++.+.- .+.-.+.+.+++
T Consensus 181 ~~~~~~~~~~~~~g~~~~l~v~-~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~ 252 (810)
T 3now_A 181 TALEWAERLVEIRGLCRLLDVC-SELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEA-------KARFTDQIDEYI 252 (810)
T ss_dssp TTTTHHHHHHHTTHHHHHHHHH-TCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHH-------HHHHHHHHHHHH
T ss_pred cccccccchhhHhhHHHHHHHH-hcCccccccccCCCChhHHHHHHHHHHHHHHHhccchh-------HHHHHHHHHHHH
Confidence 4211110 0 112222221 223333 678999999999999988884321 011122333333
Q ss_pred hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 000166 501 AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEA 580 (1974)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~ 580 (1974)
..-- . +.... . .-.+.+....-- +
T Consensus 253 ~~~~------------~--------~~~~~-~--~~~a~~alt~i~---------------~------------------ 276 (810)
T 3now_A 253 KDKL------------L--------APDME-S--KVRVTVAITALL---------------N------------------ 276 (810)
T ss_dssp HHHH------------S--------SCCHH-H--HHHHHHHHHHHH---------------S------------------
T ss_pred HHHh------------c--------cCChH-h--HHHHHHHHHHHh---------------c------------------
Confidence 2100 0 00000 0 000000000000 0
Q ss_pred CCCCCCCCCCHHHHHHHH-hccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHhcCCCccc
Q 000166 581 PEDVEPSEMSLEEIESRL-GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVCMLPGWSEK 655 (1974)
Q Consensus 581 ~~~~~~~~~s~Ee~e~~~-~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~----~~~~~Lvr~l~~~Pgwkes 655 (1974)
..+|..-... .+=+=+.++..+.|.+=..+.+|++.+...-.....-+ ...+.|+.+ ++++
T Consensus 277 --------g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~L------l~s~ 342 (810)
T 3now_A 277 --------GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRL------YHSK 342 (810)
T ss_dssp --------SSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHH------TTCS
T ss_pred --------CCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHH------HcCC
Confidence 0111111111 11111566788888888888899998876543321111 112333333 3445
Q ss_pred hHHHHHHHHHHHHHHHHhc------CCCCccchhhhccchhhccc----cchhhhHHHHHHHHHHHhh--chHh-----H
Q 000166 656 NVQVQQQVIEVINYLAATA------TKFPKKCVVLCLLGISERVA----DIKTRAHAMKCLTTFSEAV--GPGF-----I 718 (1974)
Q Consensus 656 NfqV~~k~leil~~la~~~------~~fs~~~~~~~l~~lveKlg----D~K~r~~a~e~L~~~aE~~--~p~~-----V 718 (1974)
|-.+....+-.|..++... ..|....+..+++.++.-+. |.-.+..+.++|.-++... .-++ +
T Consensus 343 ~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~ 422 (810)
T 3now_A 343 NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKAS 422 (810)
T ss_dssp CHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccch
Confidence 5555556666777776321 12333333333444444433 4457788888887776421 2222 2
Q ss_pred HHHHHHhhhhcCChhhHHHHHHHHHHHHHHhc---------------cCccc----------h----H-----hHHHHHh
Q 000166 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFG---------------VSHLK----------L----K-----DLIDFCK 764 (1974)
Q Consensus 719 ~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG---------------~~~l~----------~----K-----~lI~~~k 764 (1974)
+..+++.+ ++.++.++-+++.-++.+....- -..++ + + ..|..+.
T Consensus 423 Ip~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV 501 (810)
T 3now_A 423 IHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501 (810)
T ss_dssp HHHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence 33455554 56789999999988888876321 00000 1 1 3455667
Q ss_pred hhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccCc--C--CCC
Q 000166 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST--S--SVS 838 (1974)
Q Consensus 765 ~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l--~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~--~--~~~ 838 (1974)
.+ |.+.++.||..|...|+-+-. -+..+..+ .+.=|.|+..|...-.+ . +..... . ..+
T Consensus 502 ~L-L~s~s~~vqe~Aa~aL~NLA~--d~~~r~~Vv~~Gaip~Lv~LL~s~~~~---------~---k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 502 AL-AKTESHNSQELIARVLNAVCG--LKELRGKVVQEGGVKALLRMALEGTEK---------G---KRHATQALARIGIT 566 (810)
T ss_dssp HH-HTCCCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHHHHSSCHH---------H---HHHHHHHHHHHHHH
T ss_pred HH-HcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHccCCHH---------H---HHHHHHHHHHHhcC
Confidence 77 899999999999999998853 23466655 45556777776421100 0 000000 0 000
Q ss_pred CCCCCCCCccccccCCcHHHHhhcCCC-ChHHHHHHHHHHHHHHHHc---ccCCCCCCccchHHHHhhhccchhHhHHHH
Q 000166 839 SGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEA---NKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914 (1974)
Q Consensus 839 ~~~~d~lpRvDIs~kit~~l~~~l~d~-~WK~RkEaLe~v~~il~~a---nkrI~p~~~geL~~aLk~Rl~DsNk~lv~~ 914 (1974)
+...-.++...+.+-| +-|+.-+... +=..+.+|+.+|..|.... ..+|--.+ -+..|-.-|.+.|..+...
T Consensus 567 ~~p~~~~~~~~~~~aI-ppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG---~l~~Lv~LL~s~~~~Vq~~ 642 (810)
T 3now_A 567 INPEVSFSGQRSLDVI-RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ---GVSKIEYYLMEDHLYLTRA 642 (810)
T ss_dssp SCHHHHTTTHHHHHTH-HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHHHHHHSCCTTHHHH
T ss_pred CChhhhhcchhhhcHH-HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---CHHHHHHHHcCCCHHHHHH
Confidence 0000001111112223 3355555533 2234568999888887421 11222222 2566667777889999999
Q ss_pred HHHHHHHHHHhcChhHH-hhh--hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc--c----c--hhhhHHHHHHHhcc
Q 000166 915 TLITLGAVASAMGPAVE-KSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--H----L--DKMVPYVTTALTDA 983 (1974)
Q Consensus 915 al~ii~~lA~amG~~~~-k~~--k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~--g----l--~~~~~~i~~~L~~~ 983 (1974)
|+.+|+.|+. ++... ++. ...++.++..++..+..+|.+|..||-...... . + ..+++.+...|.++
T Consensus 643 A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~ 720 (810)
T 3now_A 643 AAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP 720 (810)
T ss_dssp HHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred HHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC
Confidence 9999999987 44443 333 357889999999999999999988888776521 1 1 34666777777754
Q ss_pred cCCcchHHHHHHHHHHHhccCCC-C-c--chhhhhhhHhhhccC---CChHHHHHHHHHHHHHHHh
Q 000166 984 KLGAEGRKDLFDWLSKQLTGLSG-F-P--DAAHLLKPASIAMTD---KSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 984 ~~~p~~R~e~l~wL~~~l~~~~~-~-~--~~~~~~~p~~~~L~D---r~~dVRkaA~~~L~~~m~~ 1042 (1974)
++..|.+.+.-|. .+..... . . ...-.+.|++.+|.+ ++.+|+..|.++|..++.+
T Consensus 721 --d~~vq~~A~~aL~-NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 721 --SPAVQHRGIVIIL-NMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp --SHHHHHHHHHHHH-HHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHH-HHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 5667766664444 4443221 0 0 112346678888743 6899999999999887753
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0016 Score=88.17 Aligned_cols=271 Identities=11% Similarity=0.204 Sum_probs=192.2
Q ss_pred HHHHHHhhhhcCChhhHHHHHHHHHHHHH-HhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc--hhH
Q 000166 719 FERLYKIMKDHKNPKVLSEGILWMVSAVE-DFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP--DIK 795 (1974)
Q Consensus 719 ~~~l~~~~~~~KnPKv~ae~l~wl~~ai~-eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~--~l~ 795 (1974)
++.+++.+.-.+ +--+.++..-++..+. +-+...+. -.+++.+++. +.+-+.+ .+|..+++.|....|. .+.
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 16 LEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKG-IKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHH-HTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccc-hhHHHHHHHH-HhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 333444444333 2223344455555555 33444455 3678888887 8887777 8888888888765543 333
Q ss_pred hhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHH
Q 000166 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1974)
Q Consensus 796 ~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe 875 (1974)
+||= + +-+.+++.++||+=.+|..|-.
T Consensus 91 ~~~~----------------------------------------------------~-~~~~~~~~~~dk~~~v~~aa~~ 117 (986)
T 2iw3_A 91 PYIV----------------------------------------------------Q-LVPAICTNAGNKDKEIQSVASE 117 (986)
T ss_dssp HHHH----------------------------------------------------T-THHHHHHHTTCSSHHHHHHHHH
T ss_pred cchH----------------------------------------------------H-HHHHHHHHhcCCchHHHHHHHH
Confidence 3331 1 2345778889999999999999
Q ss_pred HHHHHHHHcccCCCCCCccchHHHHhhhccchhH-hHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHH
Q 000166 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK-NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRE 954 (1974)
Q Consensus 876 ~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk-~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~ 954 (1974)
++..|+.. +.|.-+--++++|-.-|..++| ....-||++++.++.....-+..+..-++|-+-++.-|-|+-|..
T Consensus 118 ~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~ 193 (986)
T 2iw3_A 118 TLISIVNA----VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKA 193 (986)
T ss_dssp HHHHHHHH----SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHh----CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHH
Confidence 99999953 4454445677788888877765 678889999999998776667788889999999999999999999
Q ss_pred HHHHHHHHHHHhcc---chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC----cchhhhhhhHhh-hccCCCh
Q 000166 955 CTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASI-AMTDKSS 1026 (1974)
Q Consensus 955 aa~~alda~~~~~g---l~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~----~~~~~~~~p~~~-~L~Dr~~ 1026 (1974)
+|..||.+.+..++ ++.++|.+.+++.+|.. =.|.. ..|....-. .....++.|++. +|.+|..
T Consensus 194 ~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~----~~~~~----~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~ 265 (986)
T 2iw3_A 194 AATAAMTKATETVDNKDIERFIPSLIQCIADPTE----VPETV----HLLGATTFVAEVTPATLSIMVPLLSRGLNERET 265 (986)
T ss_dssp HHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH----HHHHH----HHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh----hHHHH----HHhhcCeeEeeecchhHHHHHHHHHhhhccCcc
Confidence 99999999999886 56778888999986642 22332 233333221 234667888555 7999999
Q ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHhhccCchh
Q 000166 1027 DVRKAAEACIVEILRAG-GQETIEKNLKDIQGPA 1059 (1974)
Q Consensus 1027 dVRkaA~~~L~~~m~~~-G~~~~~~~~~~Lk~~~ 1059 (1974)
.+...+.-++.-+.+.| ....+..++.+|.|..
T Consensus 266 ~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~ 299 (986)
T 2iw3_A 266 GIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGL 299 (986)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHH
T ss_pred hhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHH
Confidence 99988888888888877 4556677777775544
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00041 Score=78.87 Aligned_cols=183 Identities=15% Similarity=0.149 Sum_probs=134.9
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhc-C-CCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc-ch
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLAST-K-RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SS 364 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~-p-Ki~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~-y~ 364 (1974)
+.|.+.|.+.....|.+|+..|..+++. + ....---...+..|-+.+.+.+..+...|+.+|+.|+.+-...-.. ..
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4689999999999999999999765432 1 0000000135778888999888999999999999999753211111 12
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000166 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1974)
Q Consensus 365 ~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~-------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1974)
...+|.++.-+++..+.|++.+..+|-.+... .... ..++.+...|.+.++.++..++.-|....... ..
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~ 171 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE 171 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence 35899999999999999999999998887643 1111 35677888999999999998888777665432 22
Q ss_pred HHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 438 AVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 438 ~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
....+. ..++|.++..+.+++++||..|+.+|+.+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 221222 458999999999999999999999999886
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.015 Score=75.96 Aligned_cols=383 Identities=13% Similarity=0.032 Sum_probs=203.6
Q ss_pred cccccCCCChhHHHHHHHHHHHHhhhcCCCCChhhh--hhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhh-hh
Q 000166 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR--ELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-AK 92 (1974)
Q Consensus 16 l~erL~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~--~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~-~~ 92 (1974)
|-+-|.+.+...|..|..-|....... ++.-..+. ...+.+-+.+.+.|...+..++.+|..+....+...... ..
T Consensus 103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~ 181 (644)
T 2z6h_A 103 LVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181 (644)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 345677888999999999999887542 11111111 122344467788899888888888866553221110111 12
Q ss_pred HHHHHHHhhhhcC-ChhhHHHHHHHHHHHHhhch-h-----hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC
Q 000166 93 EVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEA-V-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (1974)
Q Consensus 93 ~v~~~lveK~L~~-r~ktk~~a~e~~l~~vE~e~-~-----~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~ 165 (1974)
+.++.++.-.-++ ....+..+..++..+..... . ..++..|...+.+.++.++..++.+|..+... +.....
T Consensus 182 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~-~~~~~~ 260 (644)
T 2z6h_A 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA-ATKQEG 260 (644)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG-CTTCCS
T ss_pred CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-chhhhh
Confidence 3455555432222 23333444444333332111 1 24677788888888999999999888887544 333445
Q ss_pred hhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhh-hchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHH
Q 000166 166 PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFE-KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKE 244 (1974)
Q Consensus 166 ~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~-~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~ 244 (1974)
.+.++..|-.++.+.|..||..+...+..|... ....+..+.+ +.=+..++-|...
T Consensus 261 ~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~--~~~~~~~v~~~g~v~~Lv~lL~~~--------------------- 317 (644)
T 2z6h_A 261 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRA--------------------- 317 (644)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHH---------------------
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHHcc---------------------
Confidence 678889999999999999999998888877542 1111121211 0111111111100
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhc-CC---CCC
Q 000166 245 LGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KR---IAP 320 (1974)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~-pK---i~~ 320 (1974)
+.+|..|..++..|..|... +- ...
T Consensus 318 ---------------------------------------------------~~~~~v~~~a~~aL~nL~~~~~~~~~~q~ 346 (644)
T 2z6h_A 318 ---------------------------------------------------GDREDITEPAICALRHLTSRHQEAEMAQN 346 (644)
T ss_dssp ---------------------------------------------------TTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred ---------------------------------------------------CCcHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 00122222222222222210 00 000
Q ss_pred -CChhHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccC--------------------
Q 000166 321 -GDFTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK-------------------- 378 (1974)
Q Consensus 321 -~dy~dL~~~Lkk~l~Ds-Nv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEK-------------------- 378 (1974)
---...+..|.++|.+. +..++..|+.+|+.|+.+-.....=.-..++|.+++-+++.
T Consensus 347 ~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~ 426 (644)
T 2z6h_A 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426 (644)
T ss_dssp HHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred HHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence 00001223333333322 23444444444444443211100000123444444444432
Q ss_pred --CHHHHHHHHHHHHHHHHhc----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh--hhhHHHH
Q 000166 379 --KPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH--KDYVPIC 450 (1974)
Q Consensus 379 --K~~V~eA~~~aLda~~~~~----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~--k~~~~~l 450 (1974)
-..|++++..||-.++... .+.-..+++.+...|.+.++.++..+...|..+... +. ....+ ...++.+
T Consensus 427 ~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~-~~~~i~~~g~l~~L 503 (644)
T 2z6h_A 427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPL 503 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HH-HHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HH-HHHHHHHcCChhHH
Confidence 2356667777776554310 000113567788899999999999888888876542 11 11111 2367899
Q ss_pred HhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 451 MECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
..++.+.+++||.+|..+|+.+...-+
T Consensus 504 ~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 504 TELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 999999999999999999998765554
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=97.55 E-value=0.031 Score=71.30 Aligned_cols=373 Identities=14% Similarity=0.155 Sum_probs=219.4
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCC---hhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhcccccc-c
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSG-S 363 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~d---y~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~-y 363 (1974)
++.+.+.|..=..+.+|+..+.++++..+-.+-+ =..++..|-..|. +.|..+...|+.||..||.+-...-.. .
T Consensus 80 ~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv 159 (529)
T 3tpo_A 80 DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV 159 (529)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6888999999999999999999987643322210 0125667777886 778899999999999999763322111 1
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh------hHHHHHHHhhcCCc-hhHHHHHHHHHHHHh---h
Q 000166 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKVP-LVRSLTLNWVTFCIE---T 433 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~------~~e~i~~al~~KnP-~vk~etl~~L~r~l~---~ 433 (1974)
-...+|.++.-++.....|++.+..||-.++.. +....+ .++.+...+..... ......+...+.++. .
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 235789999999999999999999999888753 111111 23556666654442 222222222333332 2
Q ss_pred CC-hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCC
Q 000166 434 SS-KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 512 (1974)
Q Consensus 434 ~~-~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~ 512 (1974)
.. ..........++|.+++++.+.+++|+..|+.+|..+...- +.. +...+.. +
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~-------------~~~---~~~v~~~-g-------- 293 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP-------------NER---IEMVVKK-G-------- 293 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-------------HHH---HHHHHTT-T--------
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh-------------hhh---HHHHHhc-c--------
Confidence 11 11111234678999999999999999999998887655311 111 1111110 0
Q ss_pred CccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHH
Q 000166 513 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLE 592 (1974)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~E 592 (1974)
T Consensus 294 -------------------------------------------------------------------------------- 293 (529)
T 3tpo_A 294 -------------------------------------------------------------------------------- 293 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 000166 593 EIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666 (1974)
Q Consensus 593 e~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~------~~~~~~Lvr~l~~~PgwkesNfqV~~k~lei 666 (1974)
+-+-++..|.+.++..+..++..+...+...+.. ......|+.+| .+.+-.|.....-+
T Consensus 294 ---------~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL------~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 294 ---------VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL------TNPKTNIQKEATWT 358 (529)
T ss_dssp ---------CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT------TCSSHHHHHHHHHH
T ss_pred ---------chHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH------cCCCHHHHHHHHHH
Confidence 0011233444455555555555444332211100 01233455544 34456677777777
Q ss_pred HHHHHHhcCCCCccc-hhhhccchhhcc--ccchhhhHHHHHHHHHHHhhchHhH--------HHHHHHhhhhcCChhhH
Q 000166 667 INYLAATATKFPKKC-VVLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPGFI--------FERLYKIMKDHKNPKVL 735 (1974)
Q Consensus 667 l~~la~~~~~fs~~~-~~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~p~~V--------~~~l~~~~~~~KnPKv~ 735 (1974)
|..++.......... -.-+++.++.-+ ++.+++..|.-+|..++....++.+ +..++.. ...++++++
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~L-L~~~d~~i~ 437 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL-LSAKDTKII 437 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG-GGCSCHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHH-hcCCCHHHH
Confidence 777664211100000 012444444433 4567888888888888876555432 2334444 478999999
Q ss_pred HHHHHHHHHHHHHhccCccc---hHh------HHHHHhhhcCCCccHHHHHHHHHHHHH
Q 000166 736 SEGILWMVSAVEDFGVSHLK---LKD------LIDFCKDTGLQSSAAATRNATIKLLGA 785 (1974)
Q Consensus 736 ae~l~wl~~ai~eFG~~~l~---~K~------lI~~~k~~~L~~sN~~VR~aAi~Ll~~ 785 (1974)
.-+|..|..+++-.. ..-. +.. .++.+..+ ..|.|..|+..|..++-.
T Consensus 438 ~~~L~aL~nil~~~~-~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 438 QVILDAISNIFQAAE-KLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEK 494 (529)
T ss_dssp HHHHHHHHHHHHHHH-TTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH-hccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHH
Confidence 999888888775321 1111 111 24456666 789999999999888643
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00095 Score=75.25 Aligned_cols=182 Identities=19% Similarity=0.158 Sum_probs=135.8
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCC-CCCC-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH---hccccccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKR-IAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSGS 363 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pK-i~~~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~g---Lr~~F~~y 363 (1974)
.+...+.+..+..|.+|+..|..++.... .... --...+..|.+.+.+.|..+...|+.+++.|+.. .+..+.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 83 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-- 83 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH--
Confidence 47778888889999999999998875432 0000 0013678888899988999999999999999864 222221
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh------hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000166 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l------~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1974)
....++.++.-+++..+.|++.+..+|-.+... .... ...++.+...+.+.+|.++..++..|....... ..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~ 161 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DE 161 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HH
Confidence 235799999999999999999999999888642 1010 135677888999999999999888888665432 22
Q ss_pred HHhHh-hhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000166 438 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 438 ~~~~~-~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1974)
....+ -..++|.++.++.+.+++||..|..+|+.+..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 21111 14589999999999999999999999998874
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.011 Score=79.12 Aligned_cols=418 Identities=14% Similarity=0.104 Sum_probs=248.1
Q ss_pred cccCCCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcC--h---hhhhh-h
Q 000166 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAAD--A---DAGRY-A 91 (1974)
Q Consensus 18 erL~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~--~---~~~~~-~ 91 (1974)
.-+.|.+=-.+..|++.+...... .+..+.......+++.+++...|...|+.++-+|+.+-...+ . .+... .
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i 375 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA 375 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence 345566667778888888875421 000111111224677788999999999987777765532211 1 11111 1
Q ss_pred hHHHHHHHhhhhc-C--ChhhHHHHHHHHHHHHhhchh-------hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhC-
Q 000166 92 KEVCDAIAAKCLT-G--RPKTVEKAQAVFMLWVELEAV-------DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG- 160 (1974)
Q Consensus 92 ~~v~~~lveK~L~-~--r~ktk~~a~e~~l~~vE~e~~-------~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG- 160 (1974)
..+++.+ -+.|. . .+..++.|.+++.-+..-... ..++..|+..+++.++.++-+|+.+|.++...+=
T Consensus 376 ~~Lv~~l-~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 376 LKLAEAC-RRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHH-HHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 2233333 34443 3 567888888886655433211 2567778888889999999999999999987431
Q ss_pred --------------CCccC----------h----hH-----HHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHH
Q 000166 161 --------------AKIIP----------P----KR-----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTI 207 (1974)
Q Consensus 161 --------------~kvv~----------~----K~-----ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~ 207 (1974)
-..++ + +. .+..|..++.+.++.||.++...+..|- |..-.+..
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA---~d~~~r~~ 531 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC---GLKELRGK 531 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH---TSHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc---CCHHHHHH
Confidence 11111 0 12 4567778889999999999999988885 32223333
Q ss_pred Hhh-hchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCC
Q 000166 208 LFE-KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLE 286 (1974)
Q Consensus 208 L~~-~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klp 286 (1974)
+.+ +.=|..+.-|. .+. + ..|......... .... . ||.-.+....+..-+|
T Consensus 532 Vv~~Gaip~Lv~LL~------s~~--~--~~k~~Aa~AL~n--L~~~--~--------------~p~~~~~~~~~~~aIp 583 (810)
T 3now_A 532 VVQEGGVKALLRMAL------EGT--E--KGKRHATQALAR--IGIT--I--------------NPEVSFSGQRSLDVIR 583 (810)
T ss_dssp HHHTTHHHHHHHHHH------SSC--H--HHHHHHHHHHHH--HHHH--S--------------CHHHHTTTHHHHHTHH
T ss_pred HHHCCCHHHHHHHHc------cCC--H--HHHHHHHHHHHH--HhcC--C--------------ChhhhhcchhhhcHHH
Confidence 321 11122222331 111 1 111111100000 0000 0 0000000000111122
Q ss_pred chhhhhhhccC-ChHHHHHHHHHHHHhhhcC-C----CCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh--cc
Q 000166 287 KSGFWEGVKAT-KWSERKDAVAELTKLASTK-R----IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RT 358 (1974)
Q Consensus 287 k~~f~~~l~s~-KWkeRkEALe~L~~L~~~p-K----i~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gL--r~ 358 (1974)
-+.+-+.+. .=..+.+|+..|..|+..+ . +... ..+..|-.++.+.|..|...|+.||+.|+.+- +.
T Consensus 584 --pLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a---G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 584 --PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKE---QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp --HHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred --HHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc---CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 244444432 2234568999999887653 1 1111 13566777788889999999999999999753 22
Q ss_pred ccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc---CCCh---hhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000166 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CLNL---VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1974)
Q Consensus 359 ~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~---~~~l---~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1974)
.|. .....++.++.-+...+..|+.++..||-.+.... +-.+ ..+++.+...+.+.++.+|.+.+.-|.....
T Consensus 659 ~~v-~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 659 MFE-GNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHH-SSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHH-hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 232 11368899999999999999999999999887620 1011 2366788889999999999998888877765
Q ss_pred hCChhHHhHhh-hhhHHHHHhhhCCC---CHHHHHHHHHHHHHHHHH
Q 000166 433 TSSKAAVLKVH-KDYVPICMECLNDG---TPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 433 ~~~~~~~~~~~-k~~~~~l~k~l~Ds---~~~VR~aA~~~l~~lmk~ 475 (1974)
. +......+. ..++++++.++.++ +.+|++.|.++|..+++.
T Consensus 738 ~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 738 A-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp T-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 3 332222222 34899999999655 899999999999888753
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0065 Score=66.15 Aligned_cols=208 Identities=19% Similarity=0.305 Sum_probs=155.4
Q ss_pred ccCCCCchhhhh----hhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHH
Q 000166 281 ILTPLEKSGFWE----GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARG 355 (1974)
Q Consensus 281 Il~klpk~~f~~----~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~g 355 (1974)
|..++.+ .|.+ -+.+.-|..||.||.-+-.+... .+.-|..+++-|-..+. |--|.+.+.-++.+|.+|+-
T Consensus 25 ~~a~~d~-~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~---~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i 100 (253)
T 2db0_A 25 IMAKYDE-SVLKKLIELLDDDLWTVVKNAISIIMVIAKT---REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE 100 (253)
T ss_dssp HHHHHCH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhH-HHHHHHHHHhccHHHHHHHhHHHHHHHHHHH---hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh
Confidence 3344442 4544 45788999999999998887642 23347778887777777 88888888888888888864
Q ss_pred hccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000166 356 LRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1974)
Q Consensus 356 Lr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~ 435 (1974)
++ .-++.++|.+++-+.=--+.++=-+.-+|..++..+...+..+.+||..-+.+||-.=|...++|+.-.=.++.
T Consensus 101 -~P---e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~ 176 (253)
T 2db0_A 101 -KP---ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176 (253)
T ss_dssp -CH---HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH
T ss_pred -CH---HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc
Confidence 21 23788999999988777777888888999999987445577899999999999998889999999885444442
Q ss_pred hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC--hhHHHHHhhcCC---HHHHHHHHHHHh
Q 000166 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--MRPLERSIEKLD---DVRRNKLSEMIA 501 (1974)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G--e~~l~~~l~~Ld---~~kk~KI~e~~~ 501 (1974)
+..-+++|-+..+|+|.+.-||-.|.++|+.+...-- -+.+..-++.+| +.-+++++|.+.
T Consensus 177 -----~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 177 -----KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp -----HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred -----cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3446789999999999999999999999998874322 122333344444 566778888764
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00062 Score=77.42 Aligned_cols=183 Identities=12% Similarity=0.085 Sum_probs=134.3
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCC-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc-cchh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSR 365 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~-~y~~ 365 (1974)
-+..-+.+..+..|.+|+..|..+.. ++..... --...+..|...+.+.|..+...|+.+|+.|+.+-..... -...
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC
Confidence 46777888889999999999998874 2221100 0012677888899988999999999999999865332211 1234
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-h-----hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000166 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1974)
Q Consensus 366 ~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~-l-----~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1974)
..+|.+++-+++....|+..+..+|-.+... ... . ..+++.+...+.+.++.++..++..|....... +...
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 215 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQK 215 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 5899999999999999999998888888642 100 0 235677888999999999999998888776432 2222
Q ss_pred hHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 440 ~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
..+. ...++.++.++.+.+++||..|+.+|..|.
T Consensus 216 ~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 2222 248899999999999999999999998664
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=97.28 E-value=0.044 Score=69.75 Aligned_cols=183 Identities=15% Similarity=0.165 Sum_probs=119.9
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhcc-chhHhHHHHHHHHHHHHHHhcChhHHhh
Q 000166 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS 933 (1974)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~Rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~ 933 (1974)
+++++.+.+.|=..+.+|+.++.++++. .|+.|+.=.-..+++.|-.-|. +.|..++..|+.+++.||.+-- .-.+.
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~-e~~~~ 138 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS-EQTKA 138 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH-HHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-HHHHH
Confidence 6789999999999999999999999963 3444432111225667777775 5567888899999999986421 12222
Q ss_pred -h-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-cc------hhhhHHHHHHHhcccCCcchHHH---HHHHHHHHh
Q 000166 934 -S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HL------DKMVPYVTTALTDAKLGAEGRKD---LFDWLSKQL 1001 (1974)
Q Consensus 934 -~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-gl------~~~~~~i~~~L~~~~~~p~~R~e---~l~wL~~~l 1001 (1974)
+ .+.+|.++..|.+....||+.|..||-.+.... .. ...++.+...|.++.. ...... ...|....+
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~-~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDL-STLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCG-GGSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccc-hhhhHHHHHHHHHHHHHH
Confidence 1 257899999999999999999999998775321 11 1224455666654321 111222 334444444
Q ss_pred ccCCC-Ccc---hhhhhhhHhhhccCCChHHHHHHHHHHHHHH
Q 000166 1002 TGLSG-FPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1974)
Q Consensus 1002 ~~~~~-~~~---~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1974)
..... ... ...++.+++.+|.+.+.+||..|..+|..+.
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 43332 222 2345556788899999999999888776553
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.004 Score=70.15 Aligned_cols=186 Identities=18% Similarity=0.123 Sum_probs=137.5
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhc-CCCCCC-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc---cccccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR---THFSGS 363 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~-pKi~~~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr---~~F~~y 363 (1974)
.+..-+.+.....|..++..|..+... +..... --...+..|...+.|.+..+...|+.+++.|+.+-. ..+.
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 125 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-- 125 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH--
Confidence 466777888899999999999988753 211100 001357778888889999999999999999995321 1121
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh------hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000166 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l------~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1974)
....++.+++-+++..+.|+..+..+|-.+... .... ..+++.+...+.+.+|.+|..++..|...... .+.
T Consensus 126 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~ 203 (252)
T 4hxt_A 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PTS 203 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHH
Confidence 236799999999999999999999888888642 1000 12567888999999999999998888876543 222
Q ss_pred HHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000166 438 AVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 438 ~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
....+. ..+++.++..+.+.+++||+.|..+|+.|...-+.
T Consensus 204 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 204 AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 222222 34789999999999999999999999999886654
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0012 Score=78.66 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCC--CChhHHHHHHHH-HhcchhHHHHHHHHHHHHHHHHH---hccccccchhhhHHHHHH
Q 000166 300 SERKDAVAELTKLASTKRIAP--GDFTEVCRTLKK-LITDVNIAVAVEAIQAIGNLARG---LRTHFSGSSRFLLPVLLE 373 (1974)
Q Consensus 300 keRkEALe~L~~L~~~pKi~~--~dy~dL~~~Lkk-~l~DsNv~vv~~A~~~i~~LA~g---Lr~~F~~y~~~~l~~lLe 373 (1974)
.+|..||+.|..++.+..... ...|-+ ..|-. +|.+.|..|...|+.||+.+|.+ .+..+-. ...+|+++.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l-~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~--~g~l~~Ll~ 131 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGM-HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG--LGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHH-HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCH-HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--CCCHHHHHH
Confidence 478899999988775322110 012333 44445 77888999999999999999964 2222222 268899999
Q ss_pred Hhc-cCCHHHHHHHHHHHHHHHHhcCCC-hh-----hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh-hh
Q 000166 374 KLK-EKKPTVAESLTQTLQAMHKAGCLN-LV-----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KD 445 (1974)
Q Consensus 374 klK-EKK~~V~eA~~~aLda~~~~~~~~-l~-----~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~ 445 (1974)
-|+ +.+..|++.+.-||-.++.. ... .. ..++.+...|++..+.++.+++..|.......+ .....+. ..
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~-~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g 209 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMG 209 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTT
T ss_pred HHccCCCHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcC
Confidence 999 46899999988888888753 111 11 245667788899999999999877776665432 2212222 34
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
++|.++.+|...+++||+.|..+|+.|.+.
T Consensus 210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999875
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0026 Score=70.19 Aligned_cols=151 Identities=11% Similarity=0.105 Sum_probs=110.0
Q ss_pred ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC
Q 000166 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (1974)
Q Consensus 322 dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~-y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~ 400 (1974)
++......|.+++.+.|..+...|+.+|+.|+.+=...-.. .....+|.+++-+++..+.|++.+..+|-.+... ...
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcH
Confidence 34455667778889899999999999999999653221111 1236899999999999999999988888887532 101
Q ss_pred h------hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 401 L------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 401 l------~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
. ...++.+...|++.+|.+|..++.-|...... .......+. ..++|.++..+.+.+++||..|+.+|+.+.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0 12567888999999999999888777655432 222222222 458999999999999999999999999987
Q ss_pred H
Q 000166 474 K 474 (1974)
Q Consensus 474 k 474 (1974)
.
T Consensus 167 ~ 167 (210)
T 4db6_A 167 S 167 (210)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=96.95 E-value=1.9 Score=59.58 Aligned_cols=383 Identities=13% Similarity=0.065 Sum_probs=207.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHhhhhcCChhhHHHHHHHHHHHHhhc--hh----hh-HH---HHH
Q 000166 64 SNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE--AV----DV-FL---DVM 133 (1974)
Q Consensus 64 sN~~aqEk~leal~~~l~~a~~~~~~~~~~v~~~lveK~L~~r~ktk~~a~e~~l~~vE~e--~~----~~-v~---e~l 133 (1974)
.|......+++++..|+...+... -....++..+.++.+ +.+..+..|.+|+..++... .. +. +. ..+
T Consensus 207 ~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~ 284 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHWIPYRY-IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNT 284 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHH
Confidence 467778888888888876543211 011345666666655 36788888999998888652 11 11 11 111
Q ss_pred HHHhhc-cCchh-------------HHHHHHHHHHHHHhhCCCc---c--------ChhHHHhhchhhhcCCChhHHHHH
Q 000166 134 EKAIKN-KVAKA-------------VVPAIDVMFQALSEFGAKI---I--------PPKRILKMLPELFDHQDQNVRASS 188 (1974)
Q Consensus 134 l~~~~~-K~PKv-------------vaaai~~l~~~l~~FG~kv---v--------~~K~ilk~l~~lf~h~dk~VR~ea 188 (1974)
+..+.. =.|.+ -..-+..+.+.+..||-.. + .+..++..+=.+..|.|-.|+..+
T Consensus 285 l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~ 364 (1049)
T 3m1i_C 285 LQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTT 364 (1049)
T ss_dssp HHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 111111 11111 0111223344444444211 0 022345555555568888898888
Q ss_pred HHHHHHHHHhh--CCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCC
Q 000166 189 KGLTLELCRWI--GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADV 266 (1974)
Q Consensus 189 ~~L~velyrwl--G~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~ 266 (1974)
..+...+-..+ .+. . ....+|...+-+..-+.++.- |. + . +-.
T Consensus 365 lefw~~l~~~l~~~~~-~----~~~~~~~l~~Lv~~ll~~m~~---~e-------d--------------~---~~~--- 409 (1049)
T 3m1i_C 365 LDYWHNLVADLFYEPL-K----KHIYEEICSQLRLVIIENMVR---PE-------E--------------V---LVV--- 409 (1049)
T ss_dssp HHHHHHHHHHHHHSTT-C----GGGGHHHHHHHHHHHHHTCCC---CT-------T--------------C---CEE---
T ss_pred HHHHHHHHHHHHhchh-H----HHHHHHHHHHHHHHHHHhcCC---Cc-------c--------------e---eee---
Confidence 87766665533 121 1 122344444444444444310 10 0 0 000
Q ss_pred CCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCC-hhHHHHHHHHHhc--chhHHHHH
Q 000166 267 PPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD-FTEVCRTLKKLIT--DVNIAVAV 343 (1974)
Q Consensus 267 ~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~d-y~dL~~~Lkk~l~--DsNv~vv~ 343 (1974)
+-|+.+ ++- +|.+ .+.-|..|+.+-+-|..+... .+.+ ..-+...|...+. ..|-...-
T Consensus 410 --~dd~~e-----~~r------~~~~--d~d~~~~~~~~~~~L~~l~~~---~~~~~l~~v~~~l~~~l~~~~~~W~~~e 471 (1049)
T 3m1i_C 410 --ENDEGE-----IVR------EFVK--ESDTIQLYKSEREVLVYLTHL---NVIDTEEIMISKLARQIDGSEWSWHNIN 471 (1049)
T ss_dssp --ECTTSC-----EEE------CSSC--CHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred --eCCCCc-----chH------hhhc--cchHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 001100 000 0111 111267777666555555421 1111 1233344455553 35667788
Q ss_pred HHHHHHHHHHHHhcccc-ccchhhhHHHHHHHh-----ccCCHHHHHHHHHHHH---HHHHhcCCChhhhHHHHHHHhhc
Q 000166 344 EAIQAIGNLARGLRTHF-SGSSRFLLPVLLEKL-----KEKKPTVAESLTQTLQ---AMHKAGCLNLVDVVEDVKTSVKN 414 (1974)
Q Consensus 344 ~A~~~i~~LA~gLr~~F-~~y~~~~l~~lLekl-----KEKK~~V~eA~~~aLd---a~~~~~~~~l~~~~e~i~~al~~ 414 (1974)
.|+-+++.+|.++...- ..|...+++.++.-. ++.++.|+..+..++- .|+..+.--+..+++-+..+|.+
T Consensus 472 aal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~ 551 (1049)
T 3m1i_C 472 TLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE 551 (1049)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 89999999998876542 234555666555411 2455555543333333 22222111256677888889999
Q ss_pred CCchhHHHHHHHHHHHHhhCChhHH-------hHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC-hhHHHHHhh
Q 000166 415 KVPLVRSLTLNWVTFCIETSSKAAV-------LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIE 486 (1974)
Q Consensus 415 KnP~vk~etl~~L~r~l~~~~~~~~-------~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G-e~~l~~~l~ 486 (1974)
.+|.|+..+..-|.+..+.+..... .+.+..++..+..++++-+.+-+...++|++.++...| .....+++.
T Consensus 552 ~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~ 631 (1049)
T 3m1i_C 552 THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLS 631 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999998888887776543321 14456777777788888888888999999999999999 355777887
Q ss_pred cCCHHHHHHHHHHHh
Q 000166 487 KLDDVRRNKLSEMIA 501 (1974)
Q Consensus 487 ~Ld~~kk~KI~e~~~ 501 (1974)
.|=+.-..+...++.
T Consensus 632 ~l~~~~~~~~~~~~~ 646 (1049)
T 3m1i_C 632 DLMQLPNMAWDTIVE 646 (1049)
T ss_dssp HHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 766555555555553
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.033 Score=66.24 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHH---HcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh--hhhhHHHH
Q 000166 868 KVRLESIEAVNKILE---EANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDIL 942 (1974)
Q Consensus 868 K~RkEaLe~v~~il~---~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~--k~l~~~il 942 (1974)
..|..|++.+..+++ .+|..++- |-++.-+..-|...|..|...|+.+|+.+|.. .+.+.+++ ...+|+++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~---G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQL---SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHT---THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHc---CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHH
Confidence 468999999999995 24444333 44443333256888999999999999999864 34455443 26889999
Q ss_pred HHhc-cCchhHHHHHHHHHHHHHHhc--cch-----hhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC-C-cc--h
Q 000166 943 KCLG-DNKKHMRECTLTVLDAWLAAV--HLD-----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-F-PD--A 1010 (1974)
Q Consensus 943 ~~l~-D~K~~vR~aa~~alda~~~~~--gl~-----~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~-~-~~--~ 1010 (1974)
..|. +.+..+|..|..||..+.... +.+ ..++.+...|.++ ++.+|.++. |+...|..... . .. -
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~-~aLs~L~~~~~~~~~~vv~ 207 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSA-FLLQNLLVGHPEHKGTLCS 207 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHH-HHHHHHHHHCGGGHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHH-HHHHHHHhCChHHHHHHHH
Confidence 9998 468899999999998876422 122 3455677777754 577788775 44445543321 1 11 1
Q ss_pred hhhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 1011 ~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
...++|++..|.+.+.+||..|-.+|+.++..
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 34677799999999999999999999998876
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=96.31 E-value=6.4 Score=54.14 Aligned_cols=287 Identities=15% Similarity=0.176 Sum_probs=165.1
Q ss_pred hhhhHHHHHHHHHHHhhch------------HhHHHHHHHhhh-----hcCChhhHHHHHHHHHHHHHHhccCccchHhH
Q 000166 697 KTRAHAMKCLTTFSEAVGP------------GFIFERLYKIMK-----DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 759 (1974)
Q Consensus 697 K~r~~a~e~L~~~aE~~~p------------~~V~~~l~~~~~-----~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~l 759 (1974)
+..+.+--+|-+++|.+.. ..+++ ++..+. ...+|+|+.-++..+++--+-|....=-+.++
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~-ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~ 536 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQ-ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPAL 536 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHH-HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHH-HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 4577777788888887542 13443 333332 37899999999999998888777655456788
Q ss_pred HHHHhh-hcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCC
Q 000166 760 IDFCKD-TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 838 (1974)
Q Consensus 760 I~~~k~-~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~ 838 (1974)
+.++-. .|+.++|+.||.+|..++..+-+-.++.|.+|+++ +++.|..-+.... + |...
T Consensus 537 L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~----il~~l~~lL~~~~-~----~~~~----------- 596 (980)
T 3ibv_A 537 IEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTES----SLAMLGDLLNISV-S----PVTD----------- 596 (980)
T ss_dssp HHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHH----HHHHTTGGGCCCC-C----CCCC-----------
T ss_pred HHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHH----HHHHHHHhhcCcC-C----CCCc-----------
Confidence 888755 24999999999999999999888877776666533 6655554443211 0 1000
Q ss_pred CCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccC--CCCCCccchHHH----Hhhhccc-----h
Q 000166 839 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR--IQPAGTGELFGG----LRGRLYD-----S 907 (1974)
Q Consensus 839 ~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankr--I~p~~~geL~~a----Lk~Rl~D-----s 907 (1974)
.|. | ....+++.. +.....+..-.|++..|+...+.- -++..+..|+.. +...+.. .
T Consensus 597 ---~~~-~-----~~~~~~~~~---~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~ 664 (980)
T 3ibv_A 597 ---MDA-P-----VPTLNSSIR---NSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALE 664 (980)
T ss_dssp -----C-S-----SCCHHHHHH---TTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--C
T ss_pred ---ccc-c-----ccchhhhcc---cCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 000 0 000112221 224566777777777777532100 011111222222 2222211 2
Q ss_pred hHhHHHHHHHHHHHHHHhcChh------HHhhhhhhhHHHHHHhc--cCchhHHHHHHHHHHHHHHhcc--chhhhHHHH
Q 000166 908 NKNLVMATLITLGAVASAMGPA------VEKSSKGVLSDILKCLG--DNKKHMRECTLTVLDAWLAAVH--LDKMVPYVT 977 (1974)
Q Consensus 908 Nk~lv~~al~ii~~lA~amG~~------~~k~~k~l~~~il~~l~--D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~ 977 (1974)
++.-+...+..++.+|.+.... +....+..++.++..|. .+...||+++..++..++..+| +.+++|.+.
T Consensus 665 ~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i 744 (980)
T 3ibv_A 665 NIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLI 744 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHH
Confidence 2222334566678888877422 44445556666655554 3568999999999999999987 455566555
Q ss_pred HHHhcccCCcchHHHHHHHHHHHhccCCCC--cchhhhhhhH
Q 000166 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPA 1017 (1974)
Q Consensus 978 ~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~--~~~~~~~~p~ 1017 (1974)
+.|-+ ...+..=.+.|.++..-....+.. +.+..++.|+
T Consensus 745 ~~ll~-~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l 785 (980)
T 3ibv_A 745 SILLN-SIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTL 785 (980)
T ss_dssp HHHHH-HCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHH
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55542 122334566776655555455432 2344455553
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.072 Score=60.52 Aligned_cols=175 Identities=14% Similarity=0.133 Sum_probs=132.3
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l 368 (1974)
++.+-+.+++=+.-.-|+.-|..|+..--+.+++|.-+..+|..++.+-|=.+.-.|+..++.+ .....++-++
T Consensus 79 ~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~ 152 (265)
T 3b2a_A 79 VFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVR 152 (265)
T ss_dssp HHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHH
Confidence 4655566666666666777778888888889999999999999999999999999999998887 3333455566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcC--CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhh
Q 000166 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1974)
Q Consensus 369 ~~lLeklKEKK~~V~eA~~~aLda~~~~~~--~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1974)
.-++.-++-|+..|-.|+..+|..+..+.. --+.+++++|.+.++|++|-++.-.+.-+.+.+...=+..+...+..+
T Consensus 153 ~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~ 232 (265)
T 3b2a_A 153 TYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKI 232 (265)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHH
Confidence 666666699999999999999999988610 128899999999999999999999999999998753222222222333
Q ss_pred HHHHHhhh-CCCCHHHHHHHHHHH
Q 000166 447 VPICMECL-NDGTPEVRDAAFSVL 469 (1974)
Q Consensus 447 ~~~l~k~l-~Ds~~~VR~aA~~~l 469 (1974)
...+-.+. -.+.|.+|+.|-...
T Consensus 233 ~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 233 SRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp HHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Confidence 33333333 588899999886543
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=96.14 E-value=2.1 Score=58.76 Aligned_cols=173 Identities=14% Similarity=0.117 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHh----cchhHHHHHHHHHHHH--HHHHHhccccccchhhhHHHHHH
Q 000166 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI----TDVNIAVAVEAIQAIG--NLARGLRTHFSGSSRFLLPVLLE 373 (1974)
Q Consensus 300 keRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l----~DsNv~vv~~A~~~i~--~LA~gLr~~F~~y~~~~l~~lLe 373 (1974)
+.|+.|=..|...+ +.-+|.|..++..|-+.| .|.+-.-..-|+.++. .+.+-+..++ .+...+++.+++
T Consensus 148 ~VR~~AQ~~L~~~~---~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~-~~~~~~~~ali~ 223 (997)
T 1vsy_5 148 DIYKPAQGTLVHCM---KQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDY-KDIGRLIFLLIE 223 (997)
T ss_dssp HHHHHHHHHHHHHH---TTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcCh-HHHHHHHHHHHH
Confidence 56777766666554 334677777766555555 3566777777777766 6666666666 478899999999
Q ss_pred HhccCCHHHHHHHHHHHHHHHHhcCCC--------------------------------------hh----hhHHHHHHH
Q 000166 374 KLKEKKPTVAESLTQTLQAMHKAGCLN--------------------------------------LV----DVVEDVKTS 411 (1974)
Q Consensus 374 klKEKK~~V~eA~~~aLda~~~~~~~~--------------------------------------l~----~~~e~i~~a 411 (1974)
....-|++|+.-+..+.+.+..+...+ .. .+.+.+++.
T Consensus 224 ~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~~~~L~~~l~~~ 303 (997)
T 1vsy_5 224 CCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSLLVDLQDKLLDK 303 (997)
T ss_dssp TCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987777777776642110 00 111111222
Q ss_pred hh-cCC--chhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH
Q 000166 412 VK-NKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1974)
Q Consensus 412 l~-~Kn--P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~ 480 (1974)
.+ +.. .....-++.||...+...... .-...+..+++.+.|..|.+|+-|..++..+++.+-.+.
T Consensus 304 ~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~----~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~ 371 (997)
T 1vsy_5 304 LDNEKDMGWKIRMFILRFVTQIQSNLESK----PDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIISLS 371 (997)
T ss_dssp HHSSTTCCSCHHHHHHHHHHHHTCCSSCC----CCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 21 111 233333333333332221111 113467789999999999999999999999988766544
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.019 Score=59.28 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=81.3
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHH
Q 000166 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE 406 (1974)
Q Consensus 327 ~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e 406 (1974)
...|...+.|.|..+-..|+.+++.+. . . -++.+++.++|..+.||..+..+|-.+ .-...++
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~----~----~---~~~~L~~~L~d~~~~vR~~A~~aL~~~------~~~~a~~ 76 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMG----D----E---AFEPLLESLSNEDWRIRGAAAWIIGNF------QDERAVE 76 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCS----S----T---THHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhC----c----h---HHHHHHHHHcCCCHHHHHHHHHHHHhc------CCHHHHH
Confidence 444555566666666555555554332 1 1 158999999999999998776665433 2245678
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHH
Q 000166 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1974)
Q Consensus 407 ~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1974)
.+...+++.+|.||..+...|.+.- . ...++.+...++|.++.||.+|..+|+.
T Consensus 77 ~L~~~L~d~~~~VR~~A~~aL~~~~----~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 77 PLIKLLEDDSGFVRSGAARSLEQIG----G-------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHC----S-------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC----c-------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8889999999999998888777541 1 2357888999999999999999999864
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.25 Score=67.76 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=98.7
Q ss_pred hhhhhhcCCCCHHHHHHHHHHHHHHHHHcCh-hhh--hhhhHHHHHHHhhhhc-C-ChhhHHHHHHHHHHHHhhc---hh
Q 000166 55 PLFKKTVADSNAPVQDKALDALIAYLKAADA-DAG--RYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWVELE---AV 126 (1974)
Q Consensus 55 ~l~kk~v~DsN~~aqEk~leal~~~l~~a~~-~~~--~~~~~v~~~lveK~L~-~-r~ktk~~a~e~~l~~vE~e---~~ 126 (1974)
+++.+.+.|+.-..|-.+.|.+..++..+-. ... ...-+|+..++.+||. + .+-|..-=..|+-.....- ..
T Consensus 511 ~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~ 590 (997)
T 1vsy_5 511 ELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRS 590 (997)
T ss_dssp HHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhh
Confidence 3445678999999999999999888755422 122 2245788899999997 5 5666553222222222222 23
Q ss_pred hhHHHHHHHHh-----hccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhh
Q 000166 127 DVFLDVMEKAI-----KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI 199 (1974)
Q Consensus 127 ~~v~e~ll~~~-----~~K~PKvvaaai~~l~~~l~~FG~kvv~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwl 199 (1974)
..++|.|..+- ..-.+=..+.-+..|..++.+.|-+.-..+.++..+- ++|.-++||++--.++..++...
T Consensus 591 ~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~ 666 (997)
T 1vsy_5 591 KTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQ 666 (997)
T ss_dssp HHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhh
Confidence 46666663211 1223445667899999999999998666788887777 99999999999999998888765
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.19 Score=55.08 Aligned_cols=165 Identities=15% Similarity=0.202 Sum_probs=118.4
Q ss_pred CcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc----cchhHhHHHHHHHHHHHHHHhcChh
Q 000166 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL----YDSNKNLVMATLITLGAVASAMGPA 929 (1974)
Q Consensus 854 it~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl----~DsNk~lv~~al~ii~~lA~amG~~ 929 (1974)
+-++++.-+.|.-|.+||.||--+-.|..+ |-||...|...| .-|- |.-.-+.||.++|.=
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~---------~~el~epl~~kL~vm~~ksE------aIpltqeIa~a~G~l 97 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKT---------REDLYEPMLKKLFSLLKKSE------AIPLTQEIAKAFGQM 97 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---------CGGGHHHHHHHHHHHHHHCC------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHH---------hHHHHHHHHHHHHHHHhhcc------cCchHHHHHHHHhHH
Confidence 345566778999999999999999988864 456665554322 1111 333445677777743
Q ss_pred HH---hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000166 930 VE---KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1974)
Q Consensus 930 ~~---k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~ 1004 (1974)
.. .-++.++|-+++.+.=..+.+|=....+|..++..-. +..++.+|...|.++ |-.-|..+|.|+. .+
T Consensus 98 a~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltsk--d~~Dkl~aLnFi~----al 171 (253)
T 2db0_A 98 AKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSK--NREDKLTALNFIE----AM 171 (253)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS--SHHHHHHHHHHHH----TC
T ss_pred HHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHH----HH
Confidence 33 2477889999998777778889899999999988864 566777888888865 4567888999986 23
Q ss_pred CC-C-cchhhhhhhHhhhccCCChHHHHHHHHHHHHH
Q 000166 1005 SG-F-PDAAHLLKPASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 1005 ~~-~-~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
.. . ....+.+.-+++.|.|++.-||..|-+.|+.+
T Consensus 172 Gen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~l 208 (253)
T 2db0_A 172 GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHL 208 (253)
T ss_dssp CTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHH
T ss_pred hccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHH
Confidence 22 1 23455565699999999999999998888665
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.29 Score=55.72 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=140.9
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhh
Q 000166 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 937 (1974)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l 937 (1974)
+++=+.|+|=.++-.||-.+++++..+++....-.+-+++..+-.-+.+.|-.+..-|+.|+..|-.+.-.+=+.|.| +
T Consensus 38 L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K-l 116 (265)
T 3b2a_A 38 ILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK-A 116 (265)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH-H
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH-H
Confidence 455689999999999999999999987666666556788888888889999999999999999999998777777765 4
Q ss_pred hHHHHHHhccCchhHHHHHHHHHHHHHHhcc-chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhh
Q 000166 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1974)
Q Consensus 938 ~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p 1016 (1974)
..++....+++...++..+.+.+... ..+. ...+...+..-+.+. |+++|.-.+..+.+--.....+.-+..++.-
T Consensus 117 ~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i~~~I~~e 193 (265)
T 3b2a_A 117 AKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGHLTLILDE 193 (265)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCCGGGTTTT
T ss_pred HHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 56777888899999999999999998 4444 466666777777543 7899999998887554333333334444444
Q ss_pred HhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 1017 ASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 1017 ~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
+---|...++.+|+.|=.+|..+...
T Consensus 194 I~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 194 IPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 55557777999999998888766543
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=94.66 E-value=21 Score=49.18 Aligned_cols=173 Identities=14% Similarity=0.130 Sum_probs=104.1
Q ss_pred cCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHH----hccccccchhhhHHH
Q 000166 296 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARG----LRTHFSGSSRFLLPV 370 (1974)
Q Consensus 296 s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~g----Lr~~F~~y~~~~l~~ 370 (1974)
++.=..|++|-+.|..+-++| +|-. .+..++. +.+..+-..|+..+....+. +...-..+.|..+-.
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~p-----~~~~---~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~ 98 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDNP-----DAWQ---KADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVG 98 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHST-----TGGG---GHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhCc-----hHHH---HHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHH
Confidence 344457999999998886665 2222 2223333 66888889999999887753 222333445544444
Q ss_pred HHHHhc-cC-----CHHHHHHHHHHHHHHHHhcC-CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhh---CCh----
Q 000166 371 LLEKLK-EK-----KPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET---SSK---- 436 (1974)
Q Consensus 371 lLeklK-EK-----K~~V~eA~~~aLda~~~~~~-~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~---~~~---- 436 (1974)
.+.... +- .+.|+..+..++-.++.+.. -.-.++++++...++ .++..+...+..|....+. ...
T Consensus 99 ~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~ 177 (1049)
T 3m1i_C 99 MIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMT 177 (1049)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSC
T ss_pred HHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 444332 11 35899999999999988721 124478888888886 4555555444444433321 111
Q ss_pred --------hHHhHhhhhhHHHHHhhhCC-CCHHHHHHHHHHHHHHHHHhC
Q 000166 437 --------AAVLKVHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 437 --------~~~~~~~k~~~~~l~k~l~D-s~~~VR~aA~~~l~~lmk~~G 477 (1974)
..+...+..+...+..++++ .++++|.++.+|+..++.-+.
T Consensus 178 ~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~ 227 (1049)
T 3m1i_C 178 QAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP 227 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC
Confidence 11222234456666677754 357899999999987765433
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=94.33 E-value=2.2 Score=58.86 Aligned_cols=383 Identities=12% Similarity=0.073 Sum_probs=212.5
Q ss_pred HHHHHHhcc--hhHHHHHHHHHHHHHHHHHhccc-cccchhhhHHHHHHHhc-----cCCHHHHHHHHHHHHH---HHHh
Q 000166 328 RTLKKLITD--VNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKLK-----EKKPTVAESLTQTLQA---MHKA 396 (1974)
Q Consensus 328 ~~Lkk~l~D--sNv~vv~~A~~~i~~LA~gLr~~-F~~y~~~~l~~lLeklK-----EKK~~V~eA~~~aLda---~~~~ 396 (1974)
..|+..+.+ .+-...-.++=|+|.|+.|+... -.++...++|.++.-.. |.|+.|++.+.-++-. |...
T Consensus 454 ~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~ 533 (1023)
T 4hat_C 454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA 533 (1023)
T ss_dssp HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc
Confidence 334444442 45677778888999999999865 77899999999998765 5777666554444432 2221
Q ss_pred cCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH-------HhHhhhhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000166 397 GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA-------VLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1974)
Q Consensus 397 ~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~-------~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l 469 (1974)
+..-|..++..+..+|...+|.|...+..=|.+.-+.+...- ..+++..++..+..++++-++.-+...++++
T Consensus 534 ~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai 613 (1023)
T 4hat_C 534 HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC 613 (1023)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 112266777888888888889887766554444433332211 1234566777788888888999999999999
Q ss_pred HHHHHHhChhH-HHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCC
Q 000166 470 AAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPV 548 (1974)
Q Consensus 470 ~~lmk~~Ge~~-l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~ 548 (1974)
++++..++... ...+++.|=+.--.+..++++.... . |.--......+.-.
T Consensus 614 ~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~-----~--------------~~~~~d~~~~~~l~--------- 665 (1023)
T 4hat_C 614 GIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTA-----N--------------PTLLLDSETVKIIA--------- 665 (1023)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----C--------------TTGGGCHHHHHHHH---------
T ss_pred HHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhc-----C--------------chhhcCHHHHHHHH---------
Confidence 99999999544 6667777766666666666543100 0 00000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHH
Q 000166 549 SAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQ 628 (1974)
Q Consensus 549 ~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~ 628 (1974)
..=++-..+..-++..+..++. .-|..=++-|+...+.
T Consensus 666 -----------------------------------------~il~~~~~v~~~lg~~f~~~~~-~i~~~~l~~y~~~s~~ 703 (1023)
T 4hat_C 666 -----------------------------------------NIIKTNVAVCTSMGADFYPQLG-HIYYNMLQLYRAVSSM 703 (1023)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 0000000000011122222221 1244444444444333
Q ss_pred HHh-h---hccc--------------hhHHHHHHHHHhcCCCccchHHHHHHHHHHHH-HHHHhcCCCCccchhhhccch
Q 000166 629 VEA-V---QNLD--------------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN-YLAATATKFPKKCVVLCLLGI 689 (1974)
Q Consensus 629 v~~-~---~~~~--------------~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~-~la~~~~~fs~~~~~~~l~~l 689 (1974)
+.. . .... ....++.+|+.+.+.-.+-.-+.+.-.++.+. ......+..-..++-.++..+
T Consensus 704 i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~i 783 (1023)
T 4hat_C 704 ISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV 783 (1023)
T ss_dssp HHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHH
Confidence 321 0 0000 01233444444433322222222333333322 222222223345667788888
Q ss_pred hhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhh--cCChhhHHHHHHHHHHHHHHhccC--ccc---hHhHHHH
Q 000166 690 SERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD--HKNPKVLSEGILWMVSAVEDFGVS--HLK---LKDLIDF 762 (1974)
Q Consensus 690 veKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~--~KnPKv~ae~l~wl~~ai~eFG~~--~l~---~K~lI~~ 762 (1974)
|+|+|+. +....-.+|-.+.|.+ +..+.+ .-+|..+.+-...+..++...=.. .++ .|.+|+.
T Consensus 784 v~~~~~~-~~~~~~~il~~vf~~T---------l~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~ 853 (1023)
T 4hat_C 784 VEKVGHM-IPQGVILILQSVFECT---------LDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDA 853 (1023)
T ss_dssp HHHHGGG-CHHHHHHHHHHHHHHH---------HHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHh-hhhhhHHHHHHHHHHH---------HHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHH
Confidence 8888863 4444444444443332 222211 457999999999988887753211 133 4789998
Q ss_pred HhhhcCCCccHHHHHHHHHHHHHHHhhhC
Q 000166 763 CKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1974)
Q Consensus 763 ~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G 791 (1974)
+.=+ +.|++..|=..+++.+-.+...+.
T Consensus 854 ~~~a-~~h~~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 854 ICWA-FKHNNRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp HHHH-HTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCchHHHHHHHHHHHHHHHHHH
Confidence 8775 999999999999999988876554
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.24 Score=52.46 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=84.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-. +-+|++-.| -++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 18 l~~~dw~~-------ileicD~I~--~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 18 NTAEDWGL-------ILDICDKVG--QSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSSCCHHH-------HHHHHHHHT--TSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCcCHHH-------HHHHHHHHH--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 56788964 333443322 2344457999999999999999999999999999999999999864 466887
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 000166 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 979 (1974)
Q Consensus 940 ~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~ 979 (1974)
.+...+...-+.|++-+++.+..|.....-++=+..|.+.
T Consensus 89 el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 128 (140)
T 3ldz_A 89 EVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAM 128 (140)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 7777776677899999999999999987655444544443
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.13 Score=52.98 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=68.6
Q ss_pred hhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccccccchHHHHH
Q 000166 1258 LPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337 (1974)
Q Consensus 1258 lP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~~Kal~~iA 1337 (1974)
+|.|+.-+.|+...||...-.. +..+. ....++.|++.++..|+.+|.+++.-|+.+ +...+++.+.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~a---L~~~~-~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~---------~~~~a~~~L~ 110 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWI---IGNFQ-DERAVEPLIKLLEDDSGFVRSGAARSLEQI---------GGERVRAAME 110 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHH---HGGGC-SHHHHHHHHHHHHHCCTHHHHHHHHHHHHH---------CSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH---HHhcC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------CcHHHHHHHH
Confidence 4888888888888888754333 33332 356788999999999999999999999875 2446788888
Q ss_pred HHhccCChhHHHHHHHHHH
Q 000166 1338 SLTAERDGEIRKAALNTLA 1356 (1974)
Q Consensus 1338 ~~i~drD~~VR~AALn~l~ 1356 (1974)
.++.|.|+.||.+|+.+|+
T Consensus 111 ~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 111 KLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHTTSCCTHHHHHHHHHGG
T ss_pred HHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999886
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=93.84 E-value=30 Score=47.62 Aligned_cols=170 Identities=11% Similarity=0.052 Sum_probs=107.8
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcch---hHHHHHHHHHHHHHHHHHhccc----cccchhhhHH
Q 000166 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDV---NIAVAVEAIQAIGNLARGLRTH----FSGSSRFLLP 369 (1974)
Q Consensus 297 ~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~Ds---Nv~vv~~A~~~i~~LA~gLr~~----F~~y~~~~l~ 369 (1974)
+.=..|++|.+-|..+-++|- -....-.++.++ |..|-.-|++++....+.|... =..+.|..+-
T Consensus 20 sd~~~r~~A~~~L~~~q~sp~--------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll 91 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSSST--------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVW 91 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHSTT--------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcChh--------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHH
Confidence 357889999888888766542 233444556533 7899999999999888866665 4556666666
Q ss_pred HHHHHhc--cCCHHHHHHHHHHHHHHHHhc-CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh----h---C--C--
Q 000166 370 VLLEKLK--EKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----T---S--S-- 435 (1974)
Q Consensus 370 ~lLeklK--EKK~~V~eA~~~aLda~~~~~-~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~----~---~--~-- 435 (1974)
.++.+.. .-.+.|+..+..+|-.++.+. -..-.++++++...+.+.++. ....++-|.+. . . +
T Consensus 92 ~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~---~~~~~~LriL~~i~EEv~~~~~~~~ 168 (980)
T 3ibv_A 92 SYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQS---EFSNFYLKVLLSIGDEIADSLVLKT 168 (980)
T ss_dssp HHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHCCCCSCCC
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChh---HHHHHHHHHHHHhHHHHHhcccccC
Confidence 6776653 345689999999999999861 123457888888888766652 23334444443 1 0 0
Q ss_pred -----hh-HHhHh-----hhhhHHHHH----hhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 436 -----KA-AVLKV-----HKDYVPICM----ECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 436 -----~~-~~~~~-----~k~~~~~l~----k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
+. .+.+. +..+.+.++ .+.+..+++++..+.+||+..+.-+.
T Consensus 169 ~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~ 225 (980)
T 3ibv_A 169 DVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN 225 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Confidence 10 01111 111233333 44444788999999999988886433
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=93.61 E-value=0.26 Score=53.52 Aligned_cols=107 Identities=13% Similarity=0.310 Sum_probs=80.2
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-.=.| |-.+|+. ++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 28 ~~~~Dw~~~le----icD~I~~-----~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~ 98 (163)
T 1x5b_A 28 NTTEDWSLIMD----ICDKVGS-----TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFAT 98 (163)
T ss_dssp CSSCCHHHHHH----HHHHHHH-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHH
T ss_pred CCCcCHHHHHH----HHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 45679975333 3333321 244447999999999999999999999999999999999999854 355887
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHH
Q 000166 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVT 977 (1974)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~ 977 (1974)
.++..+.. .-+.|++-+++.+..|....+-+.=+..|.
T Consensus 99 el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~ 137 (163)
T 1x5b_A 99 EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLIS 137 (163)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCSTTHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 77777754 336999999999999999876443344333
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.47 Score=50.74 Aligned_cols=112 Identities=14% Similarity=0.215 Sum_probs=83.8
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
.+.+.||-.=. +|=.+|+. ++.+-.|.+++|++||+..|.+++..||.++..+..-.|+.|-.. .+-|+
T Consensus 13 ~l~~~dw~~~l----eicD~I~~-----~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl 83 (148)
T 1mhq_A 13 SMSEQDWSAIQ----NFCEQVNT-----DPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFL 83 (148)
T ss_dssp TCSSCCHHHHH----HHHHHHHH-----SSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCCcCHHHHH----HHHHHHHc-----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHH
Confidence 34568996533 33333332 133347899999999999999999999999999999999999765 56788
Q ss_pred HHHHHHhccC------chhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 939 SDILKCLGDN------KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 939 ~~il~~l~D~------K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
..+...+.++ -..||+-+++.+..|....+-++-+..+-..|+
T Consensus 84 ~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 84 NELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (148)
T ss_dssp HHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 8888888763 569999999999999998754433333334443
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.5 Score=50.58 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=79.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-. +-.|++--| -++.+-.|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 24 l~~~dw~~-------ileicD~I~--~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 24 NKELDWAS-------INGFCEQLN--EDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CSSCCHHH-------HHHHHHHGG--GSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH-------HHHHHHHHH--CCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 45678863 333443322 2344447899999999999999999999999999999999999754 667888
Q ss_pred HHHHHhccC------chhHHHHHHHHHHHHHHhccch
Q 000166 940 DILKCLGDN------KKHMRECTLTVLDAWLAAVHLD 970 (1974)
Q Consensus 940 ~il~~l~D~------K~~vR~aa~~alda~~~~~gl~ 970 (1974)
.++..+.++ -..||+-+++.+..|.....-+
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 131 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 131 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 888888763 5689999999999999987543
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=0.29 Score=53.57 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=83.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-. .-+|-.+|+. ++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 26 l~~~Dw~~----ileicD~I~~-----~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~ 96 (171)
T 1juq_A 26 NRQEDWEY----IIGFCDQINK-----ELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 96 (171)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHc-----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 45789964 3333334432 233447899999999999999999999999999999999999864 566888
Q ss_pred HHHHHhccC------chhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 940 DILKCLGDN------KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 940 ~il~~l~D~------K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
.++..+..+ -..||+-+++.+..|....+-+.-+..+-..|+
T Consensus 97 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 97 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 888888642 379999999999999998865443344444444
|
| >1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=91.99 E-value=0.48 Score=51.08 Aligned_cols=110 Identities=19% Similarity=0.351 Sum_probs=80.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-chhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
+.+.||-.=.|=-| +|+. ++.+.-|.+++|++||+ ..|.+++..||.++..+..=.|+.|... .+-++
T Consensus 29 l~~~Dw~~~leicD----~I~~-----~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl 99 (157)
T 1elk_A 29 LQSEDWALNMEICD----IINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 99 (157)
T ss_dssp CSSCCHHHHHHHHH----HHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCcCHHHHHHHHH----HHhC-----CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHH
Confidence 45678975433333 3331 23445799999999997 6899999999999999999999999864 45688
Q ss_pred HH-HHHHhccC---chhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000166 939 SD-ILKCLGDN---KKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1974)
Q Consensus 939 ~~-il~~l~D~---K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1974)
.. ++..+.++ ...||+-+++.+..|....+-++-+..|.+..
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y 145 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIY 145 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence 87 56666542 34899999999999999876554445444443
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.66 Score=58.40 Aligned_cols=150 Identities=11% Similarity=0.047 Sum_probs=102.5
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchh-h
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR-F 366 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~-~ 366 (1974)
+.+...|=+.+|..|=-|--.|-.+++..--..|-. ...|. -+|++++..|| -..|.-|+. .
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~~N~---DLAvRLLCVLA---LDRFGDYVSDq 239 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IRVDS---KLFSKIYEILV---TDKFNDFVDDR 239 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CCCCT---THHHHHHHHHH---HBCCBBCSSSS
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------ccccH---HHHHHHHHHHH---hccccccccCe
Confidence 367778899999999988888877765322111111 22233 66777777776 356777754 2
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhh
Q 000166 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1974)
Q Consensus 367 ~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1974)
++ +.|||.+.++|-++ .+-... -+++..+...+.+..+++|-..+.=|.-. .+.+.. +..+
T Consensus 240 VV-----------APVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~V 300 (800)
T 3oc3_A 240 TV-----------APVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGL 300 (800)
T ss_dssp CB-----------CHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHH
T ss_pred ee-----------eehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHH
Confidence 32 45899999999999 551122 35556555666888999998777655544 121112 4778
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 447 VPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
+++++.+|.|.+-|||..|+++|-.+.
T Consensus 301 v~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 301 CRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 999999999999999999999988777
|
| >3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.42 Score=51.33 Aligned_cols=110 Identities=16% Similarity=0.301 Sum_probs=79.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc-hhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~D-sNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
+.+.||-. .-+|=.+|+. ++.+--|.+++|++||.. .|.+++..||.++..+..=.|+.|... .+-|+
T Consensus 29 l~~~Dw~~----ileicD~In~-----~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl 99 (152)
T 3rru_A 29 VQTEDWGQ----FMHICDIINT-----TQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFV 99 (152)
T ss_dssp CCSCCHHH----HHHHHHHHHH-----STTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCccHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhH
Confidence 55678973 3333333332 234447999999999985 488899999999999999999999865 45677
Q ss_pred HH-HHHHhccCc---hhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000166 939 SD-ILKCLGDNK---KHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1974)
Q Consensus 939 ~~-il~~l~D~K---~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1974)
.. ++..+.++. ..||+-+++.+..|.....-++=++.|.++.
T Consensus 100 ~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y 145 (152)
T 3rru_A 100 KENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVY 145 (152)
T ss_dssp TTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 76 555555432 3699999999999999886554445555443
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=90.97 E-value=36 Score=47.06 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhc-----------------cCCHHHH------HHHHHHHHHHH
Q 000166 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK-----------------EKKPTVA------ESLTQTLQAMH 394 (1974)
Q Consensus 338 Nv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklK-----------------EKK~~V~------eA~~~aLda~~ 394 (1974)
++.-...-++|+..+|+++|..|.+|+..+++.+++..+ .|-+.|| ..+..-+..+.
T Consensus 660 ~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i 739 (1023)
T 4hat_C 660 TVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYI 739 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556799999999999999999999999997532 2333222 22334444454
Q ss_pred HhcCCCh--------hhhHHHHHHHhhcCCchhHH-HHHHHHHHHHhhCCh---hHHhHhhhhhHHHHHhhhCC---CCH
Q 000166 395 KAGCLNL--------VDVVEDVKTSVKNKVPLVRS-LTLNWVTFCIETSSK---AAVLKVHKDYVPICMECLND---GTP 459 (1974)
Q Consensus 395 ~~~~~~l--------~~~~e~i~~al~~KnP~vk~-etl~~L~r~l~~~~~---~~~~~~~k~~~~~l~k~l~D---s~~ 459 (1974)
.. +... ..+++-|+.--.+-+|..|. +.+..++-.+.+... +.+..++..+...-+..+++ ..|
T Consensus 740 ~~-~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~P 818 (1023)
T 4hat_C 740 SK-ARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYP 818 (1023)
T ss_dssp HH-CSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSH
T ss_pred hc-CCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccCh
Confidence 43 3332 23333344333455677775 555555555554332 22334444444444455555 789
Q ss_pred HHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH
Q 000166 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1974)
Q Consensus 460 ~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1974)
+.|+.=+..+.++..+. +..++ .+++..-+.+.+++
T Consensus 819 e~r~~ff~ll~~~~~~~----f~~~~-~~~~~~~~~~~~~~ 854 (1023)
T 4hat_C 819 EHRVEFYKLLKVINEKS----FAAFL-ELPPAAFKLFVDAI 854 (1023)
T ss_dssp HHHHHHHHHHHHHHHHC----THHHH-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC----hHHHH-cCCHHHHHHHHHHH
Confidence 99999999888887763 22233 37766656666654
|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 | Back alignment and structure |
|---|
Probab=90.77 E-value=0.42 Score=54.32 Aligned_cols=100 Identities=16% Similarity=0.304 Sum_probs=77.2
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
.+.+.||..=.| |-.+|+. ++.+--|.+++|++||...|.+++..||.++..+..-.|+.|... .+-++
T Consensus 17 ~~~~~dw~~~le----icd~i~~-----~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl 87 (220)
T 1dvp_A 17 LRLEPDWPSILL----ICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENC 87 (220)
T ss_dssp TCSSCCHHHHHH----HHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHH
T ss_pred CCCCcCHHHHHH----HHHhhcC-----CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHH
Confidence 345789986444 3333431 233447999999999999999999999999999999999999654 45577
Q ss_pred HHHHHHhccC-chhHHHHHHHHHHHHHHhccc
Q 000166 939 SDILKCLGDN-KKHMRECTLTVLDAWLAAVHL 969 (1974)
Q Consensus 939 ~~il~~l~D~-K~~vR~aa~~alda~~~~~gl 969 (1974)
..+...+++. -..||+-+++.+..|....+-
T Consensus 88 ~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 88 EMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 7777766653 368999999999999988653
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=90.65 E-value=1.8 Score=52.66 Aligned_cols=187 Identities=9% Similarity=0.013 Sum_probs=125.7
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhc--CCCCC--CChhHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHH---hcccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAST--KRIAP--GDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARG---LRTHF 360 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~--pKi~~--~dy~dL~~~Lkk~l-~DsNv~vv~~A~~~i~~LA~g---Lr~~F 360 (1974)
-+..-+.+..=..|..|.-.|..|... +.... .+.| .+..|-++| ...+..+...|+.++..|+.+ .+..+
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G-~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i 209 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 209 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHH
Confidence 366667777777888888888887642 11100 1112 344555543 345677888999999999973 33333
Q ss_pred ccchhhhHHHHHHHhccCCH----HHHHHHHHHHHHHHHh--cCCC-h-----hhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000166 361 SGSSRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1974)
Q Consensus 361 ~~y~~~~l~~lLeklKEKK~----~V~eA~~~aLda~~~~--~~~~-l-----~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1974)
.. ....+|+|++-++..+. .|++.+..+|-.+..+ ++.. - ...++.+...|.+.++.++.++..-|.
T Consensus 210 ~~-~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 288 (354)
T 3nmw_A 210 CA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 288 (354)
T ss_dssp HH-STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HH-hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 21 35789999999987765 4888888888877652 0100 0 124567788899999999999888777
Q ss_pred HHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000166 429 FCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 429 r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
.+-.. .......+. ...+|.|+.+|.+.++.+|+.|+.+|..|...-.+
T Consensus 289 nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 289 NLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 66422 222222222 34789999999999999999999999988875443
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.25 E-value=1.4 Score=53.52 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=103.0
Q ss_pred hccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccch---HHH
Q 000166 1219 QFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKT---LPY 1295 (1974)
Q Consensus 1219 r~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skv---f~~ 1295 (1974)
-|.+++. --.||-+++..++- +.-.|++|++.|+..+.+..+.=+..+.-..|.-+---++.+... | .-+ ...
T Consensus 33 ~fn~~~~-~~~kc~~~l~kll~-l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~iLv~Ns 108 (355)
T 3tjz_B 33 VFNETPI-NPRKCAHILTKILY-LINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVIIVTSS 108 (355)
T ss_dssp GTTSSSC-CHHHHHHHHHHHHH-HHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGGGGHHH
T ss_pred HhcCCCC-cHHHHHHHHHHHHH-HHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHHHHHHH
Confidence 4555522 22355556665554 445668999999999999888777777777888777777766665 3 223 335
Q ss_pred HHhhhccCChhhHhHHHHHHHHHHHhhcCccccccch-HHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhcc
Q 000166 1296 ILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (1974)
Q Consensus 1296 l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~~Ka-l~~iA~~i~drD~~VR~AALn~l~~~Y~~~Gd~v~k~vg~ 1372 (1974)
|+.=+.++|.=.|.-.|.-|+++.+.- | ... .+.|.+++.|+||.||++|+-|...+|....|-+.+++..
T Consensus 109 l~kDl~~~N~~iR~lALRtL~~I~~~~-m-----~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~ 180 (355)
T 3tjz_B 109 LTKDMTGKEDSYRGPAVRALCQITDST-M-----LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNE 180 (355)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCTT-T-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHH
T ss_pred HHhhcCCCcHhHHHHHHHHHhcCCCHH-H-----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 566789999999999999999974211 1 223 4889999999999999999999887777777766554443
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=89.63 E-value=35 Score=44.18 Aligned_cols=370 Identities=11% Similarity=0.067 Sum_probs=186.5
Q ss_pred hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch--hhhccchhhccc--cchhhhHHHHHHHHHHHh
Q 000166 637 QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEA 712 (1974)
Q Consensus 637 ~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~--~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~ 712 (1974)
.....||++|. ..|..++......|..++... .-.+..+ .-.|+.+|+-|. +..++..|..+|..++-.
T Consensus 48 ~~i~~LV~~L~------s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 48 PELPEVIAMLG------FRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120 (584)
T ss_dssp CCHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence 34666777763 345677777777787776421 1112222 124577776554 457888888888888742
Q ss_pred ---hchHhH-----HHHHHHhhhhcCChhhHHHHHHHHHHHH--HHhccCcc--chHhHHHHHh--hhcC----------
Q 000166 713 ---VGPGFI-----FERLYKIMKDHKNPKVLSEGILWMVSAV--EDFGVSHL--KLKDLIDFCK--DTGL---------- 768 (1974)
Q Consensus 713 ---~~p~~V-----~~~l~~~~~~~KnPKv~ae~l~wl~~ai--~eFG~~~l--~~K~lI~~~k--~~~L---------- 768 (1974)
..-..| +..++..+....++.++..+...|..+- .+.-..++ -+..|+..+. ..|.
T Consensus 121 ~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence 111222 3456666555566766655443322221 11000000 1334555431 1111
Q ss_pred -CCccHHHHHHHHHHHHHHHhhhCchhHhhh---hcchHHHHHHHHHHHhcCCCCCCCC--CccccccccCcCCCCCCCC
Q 000166 769 -QSSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALDAEYEKNPFEGTVV--PKKTVRASESTSSVSSGGS 842 (1974)
Q Consensus 769 -~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l---~dlkpall~~Ie~EF~K~~~~~~p~--p~R~~r~~~~~~~~~~~~~ 842 (1974)
.+.++.|+..|..+|..|-.. ++..+..+ +.+-++|+..|....++........ -....|.=.. ...
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~------~~~ 273 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY------QVH 273 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT------THH
T ss_pred cccccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc------ccc
Confidence 234689999999888877431 22223322 4566788888876644431100000 0000000000 000
Q ss_pred CCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCcc-----chHHHHhhhccc-hhHhHHHHHH
Q 000166 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-----ELFGGLRGRLYD-SNKNLVMATL 916 (1974)
Q Consensus 843 d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~g-----eL~~aLk~Rl~D-sNk~lv~~al 916 (1974)
...|..+ . +.....+ +.. .+. --++.++. +.++.|-.-|.+ .|..+...|+
T Consensus 274 ~e~~~~~---~----~~~~~~~----------~~~-~~~-----~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa 330 (584)
T 3l6x_A 274 REIPQAE---R----YQEAAPN----------VAN-NTG-----TSPARGYELLFQPEVVRIYISLLKESKTPAILEASA 330 (584)
T ss_dssp HHSTTCC---C----------------------------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ccccchh---h----hhhhccc----------ccc-ccc-----ccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHH
Confidence 0000000 0 0000000 000 000 11223322 223444455543 4788888999
Q ss_pred HHHHHHHHhcChh---HHhhh--hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhh-----HHHHHHHhcccC-
Q 000166 917 ITLGAVASAMGPA---VEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV-----PYVTTALTDAKL- 985 (1974)
Q Consensus 917 ~ii~~lA~amG~~---~~k~~--k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~-----~~i~~~L~~~~~- 985 (1974)
.+|..|+.+-++. +...+ ...+|.++..|......|+.+|..+|-..........++ +.+...|.++..
T Consensus 331 ~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 331 GAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCS
T ss_pred HHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCccc
Confidence 9999998765432 22232 245899999999999999999999999887765554444 344444544321
Q ss_pred -----CcchHHHHHHHHHHHhccCCCC-c--chhhhhhhHhhhccCC--ChHHHHHHHHHHHHHHHhc
Q 000166 986 -----GAEGRKDLFDWLSKQLTGLSGF-P--DAAHLLKPASIAMTDK--SSDVRKAAEACIVEILRAG 1043 (1974)
Q Consensus 986 -----~p~~R~e~l~wL~~~l~~~~~~-~--~~~~~~~p~~~~L~Dr--~~dVRkaA~~~L~~~m~~~ 1043 (1974)
+.+....++.-|..-....... . .....+.+++..|.++ .+.++++|..+|-.++.+-
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 1222333333333222221111 1 1133466788888876 8899999999987776543
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=89.21 E-value=2 Score=49.02 Aligned_cols=109 Identities=17% Similarity=0.317 Sum_probs=78.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-.=.| |=.+|+ . ++.+--|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 21 ~~~~dw~~ile----icD~I~---~--~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 21 LLETDWESILQ----ICDLIR---Q--GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp CSSCCHHHHHH----HHHHHH---T--TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred CCCcCHHHHHH----HHHHHh---C--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 45678975333 333332 1 234447999999999999999999999999999999999998764 555666
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 000166 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 979 (1974)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~ 979 (1974)
.+...++. ....|++-+++.+..|.....-+.=++.|.+.
T Consensus 92 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 132 (226)
T 3zyq_A 92 ELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDT 132 (226)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 66555543 23579999999999999887544434444443
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.99 E-value=6.7 Score=47.66 Aligned_cols=188 Identities=15% Similarity=0.145 Sum_probs=123.8
Q ss_pred CCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhh-hcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHH
Q 000166 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQA 348 (1974)
Q Consensus 270 iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~-~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~ 348 (1974)
..||.-.|...|+.... .|.+-= ..=+-+++++..+.-+. .-..+..-.-..++-.+-|++.-.|..+-.+.-=.
T Consensus 16 ~~p~~~~~k~~v~qe~r--~fn~~~--~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLy 91 (355)
T 3tjz_B 16 SNPFQHLEKSAVLQEAR--VFNETP--INPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLT 91 (355)
T ss_dssp ----CCCCHHHHHHHGG--GTTSSS--CCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHH--HhcCCC--CcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 35665556544543321 232210 12233467888876643 22222222345677777788876665555554444
Q ss_pred HHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000166 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1974)
Q Consensus 349 i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1974)
+..+++- ..-+-++.+.+..-+.++.+-+|..+..+|-.+... .-++++...+..++.|++|-||..++.-..
T Consensus 92 l~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 92 IKEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVSSSALVSSL 164 (355)
T ss_dssp HHHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5555554 344669999999999999999999888888777543 346777788889999999999999999888
Q ss_pred HHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 429 FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 429 r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
+.+...+ .+++.++..+..+++|+++-|--.|..+|-.+.
T Consensus 165 kL~~~~p-----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 165 HLLKCSF-----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp HHTTTCH-----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhccCH-----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 8876542 224678999999999999999865555554443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.93 E-value=4.8 Score=50.63 Aligned_cols=184 Identities=10% Similarity=0.026 Sum_probs=122.9
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhc--CCCCC--CChhHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHH---hcccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAST--KRIAP--GDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARG---LRTHF 360 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~--pKi~~--~dy~dL~~~Lkk~l-~DsNv~vv~~A~~~i~~LA~g---Lr~~F 360 (1974)
-+..-|.+..=.-|..|.-.|..|... +.... .+. ..+..|-.+| ...+..+...|+.+|..|+.+ .+..|
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 366666666666777788787777532 11100 111 2344555554 455778889999999999983 33334
Q ss_pred ccchhhhHHHHHHHhccCCHH----HHHHHHHHHHHHHHh--cCCC-hh-----hhHHHHHHHhhcCCchhHHHHHHHHH
Q 000166 361 SGSSRFLLPVLLEKLKEKKPT----VAESLTQTLQAMHKA--GCLN-LV-----DVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1974)
Q Consensus 361 ~~y~~~~l~~lLeklKEKK~~----V~eA~~~aLda~~~~--~~~~-l~-----~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1974)
.. ....+|+|++-+...+.. |++.+..+|-.+..+ ++.. -. ..++.+...|.+.++.++.++..-|.
T Consensus 326 ~~-~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 326 CA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HH-STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HH-hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 21 256899999999887764 888888888877652 1100 11 23566778889999999999888777
Q ss_pred HHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 429 FCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 429 r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
.+-.. .......+. ...+|.++.+|...++.+|+.|+.+|..|...
T Consensus 405 nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 405 NLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 66532 222222222 34789999999999999999999999988754
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=87.87 E-value=6 Score=48.01 Aligned_cols=171 Identities=11% Similarity=0.072 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhhhcCC-CCC--CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHh
Q 000166 301 ERKDAVAELTKLASTKR-IAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKL 375 (1974)
Q Consensus 301 eRkEALe~L~~L~~~pK-i~~--~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~lLekl 375 (1974)
-|.+|...|..|+.... ... ..++..+..|-.+|...|..+...|+.+|..|+.+=....... -...+|+|++-+
T Consensus 100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL 179 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHH
Confidence 46677777777763221 111 1245677888888887788899999999999987511111112 135689999975
Q ss_pred -ccCCHHHHHHHHHHHHHHHHhcCCC----h---hhhHHHHHHHhhcCCch----hHHHHHHHHHHHHhh---CChhHHh
Q 000166 376 -KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVPL----VRSLTLNWVTFCIET---SSKAAVL 440 (1974)
Q Consensus 376 -KEKK~~V~eA~~~aLda~~~~~~~~----l---~~~~e~i~~al~~KnP~----vk~etl~~L~r~l~~---~~~~~~~ 440 (1974)
+.....+++.+..||-.+... |.. + ...++.+...|.+..+. ++.++... -+.+.. .......
T Consensus 180 ~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~a-L~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 180 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI-LRNVSSLIATNEDHRQ 257 (354)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHH-HHHHHHHHTTCHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHH-HHHHHhhccCCHHHHH
Confidence 556788888888888777642 211 1 13456666777777653 66665543 344443 1222211
Q ss_pred Hhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 441 ~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
.+. ...+|.++.+|.+.+.+|++.|+.+|..+.
T Consensus 258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 222 237899999999999999999999988775
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=87.72 E-value=0.64 Score=53.71 Aligned_cols=187 Identities=11% Similarity=0.057 Sum_probs=105.3
Q ss_pred HHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcch
Q 000166 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802 (1974)
Q Consensus 723 ~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlk 802 (1974)
+..+..+.+|.|+..+...+ + ...+..+ +.+.|+.||..+..-|. .+.|..++.|..
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l------------~----~~~l~~L-~~D~~~~VR~~aA~~L~------~~~L~~ll~D~d 111 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS------------P----VEALTPL-IRDSDEVVRRAVAYRLP------REQLSALMFDED 111 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS------------C----GGGGGGG-TTCSSHHHHHHHHTTSC------SGGGGGTTTCSC
T ss_pred HHHHhcCCCHHHHHHHHHhC------------C----HHHHHHH-ccCcCHHHHHHHHHHCC------HHHHHHHHcCCC
Confidence 44445788999998877642 1 1235556 89999999999886321 233444444433
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHH-HHhhcCCCChHHHHHHHHHHHHHH
Q 000166 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPT-LVKSLESPDWKVRLESIEAVNKIL 881 (1974)
Q Consensus 803 pall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~-l~~~l~d~~WK~RkEaLe~v~~il 881 (1974)
+......=.. ++.+ +..-++|++|.+|.++...+
T Consensus 112 ~~VR~~aA~~-----------------------------------------l~~~~L~~L~~D~d~~VR~~aA~~l---- 146 (244)
T 1lrv_A 112 REVRITVADR-----------------------------------------LPLEQLEQMAADRDYLVRAYVVQRI---- 146 (244)
T ss_dssp HHHHHHHHHH-----------------------------------------SCTGGGGGGTTCSSHHHHHHHHHHS----
T ss_pred HHHHHHHHHh-----------------------------------------CCHHHHHHHHcCCCHHHHHHHHHhc----
Confidence 3322221111 1111 22336788888888877631
Q ss_pred HHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHH
Q 000166 882 EEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961 (1974)
Q Consensus 882 ~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~ald 961 (1974)
. .+ .|..-++|.|..|-..++.- ++. +-+...++|....||.+++..+
T Consensus 147 -------~----~~---~l~~l~~D~d~~VR~~aa~~-------l~~----------~ll~~ll~D~d~~VR~aaa~~l- 194 (244)
T 1lrv_A 147 -------P----PG---RLFRFMRDEDRQVRKLVAKR-------LPE----------ESLGLMTQDPEPEVRRIVASRL- 194 (244)
T ss_dssp -------C----GG---GGGGTTTCSCHHHHHHHHHH-------SCG----------GGGGGSTTCSSHHHHHHHHHHC-
T ss_pred -------C----HH---HHHHHHcCCCHHHHHHHHHc-------CCH----------HHHHHHHcCCCHHHHHHHHHhC-
Confidence 1 12 23344578887777666542 221 2233556888888888888763
Q ss_pred HHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHH
Q 000166 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1974)
Q Consensus 962 a~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1974)
+. +.+...+.++ +++.|..+..-+ . .+.+..|.|.+..||.+|.+.|+
T Consensus 195 ------~~----~~L~~Ll~D~--d~~VR~~aa~~l----~------------~~~L~~L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 ------RG----DDLLELLHDP--DWTVRLAAVEHA----S------------LEALRELDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ------CG----GGGGGGGGCS--SHHHHHHHHHHS----C------------HHHHHHCCCCCHHHHHHHHCCC-
T ss_pred ------CH----HHHHHHHcCC--CHHHHHHHHHcC----C------------HHHHHHccCCCHHHHHHHHHHhC
Confidence 21 2233334544 466777666542 1 24444468888888888876554
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=87.38 E-value=24 Score=40.99 Aligned_cols=127 Identities=12% Similarity=0.150 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC
Q 000166 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1974)
Q Consensus 300 keRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK 379 (1974)
.+|.+.|.++..++-+. .+.=|.+++..+-....|++..|-...+.-|+..+ +++ ..++..+++.+..-+.|.-
T Consensus 30 ~~kl~~L~qa~el~~~~--dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~---~~k-~~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS--CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC---KVK-VELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH---HHC-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcc--CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHcCCC
Confidence 69999999999865322 23458899999988877999998888888887776 322 2478889999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----cCCC------hh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000166 380 PTVAESLTQTLQAMHKA----GCLN------LV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1974)
Q Consensus 380 ~~V~eA~~~aLda~~~~----~~~~------l~-------~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1974)
+.|...+..|...++.. -|.+ .+ .+-+.|+.-+.+.|..+|..+++|+.+++-
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 99999888888877653 1111 12 233556777889999999999999999984
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=86.82 E-value=2 Score=45.79 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=74.9
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+.. . +..=.+.+++|+++|...|.+++..|+..++.+.+-=|..|... .+-++..|
T Consensus 14 l~~~dw~~~leicD~I~~---~----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL 86 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNT---D----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNEL 86 (148)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc---C----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 445777654444444322 1 11235889999999999999999999999999999999999766 47788888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKEK------K~~V~eA~~~aLda~~~~ 396 (1974)
...++.| -..|++-+.+.+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 87 IKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8777764 568999999999999875
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=86.45 E-value=2.7 Score=44.93 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=74.6
Q ss_pred hhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000166 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1974)
Q Consensus 293 ~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~ 370 (1974)
.+.+.+|.-=.|.-|.+ -+ .+..=.+.+++|+++|...|.+++..|+..++.+.+-=|+.|... .+-++..
T Consensus 23 ~l~~~dw~~ileicD~I---~~----~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~e 95 (149)
T 3g2s_A 23 LNKELDWASINGFCEQL---NE----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNE 95 (149)
T ss_dssp TCSSCCHHHHHHHHHHG---GG----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHH
T ss_pred CCCCcCHHHHHHHHHHH---HC----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH
Confidence 34567886443333332 11 122345899999999999999999999999999999999999765 5677888
Q ss_pred HHHHhccC------CHHHHHHHHHHHHHHHHh
Q 000166 371 LLEKLKEK------KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 371 lLeklKEK------K~~V~eA~~~aLda~~~~ 396 (1974)
|...+++| -..|++-+.+.+..|...
T Consensus 96 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 96 LIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 88888764 568999999999999875
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=86.44 E-value=1.7 Score=45.84 Aligned_cols=97 Identities=15% Similarity=0.194 Sum_probs=73.3
Q ss_pred hhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccch--hhhHHH
Q 000166 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPV 370 (1974)
Q Consensus 293 ~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~--~~~l~~ 370 (1974)
.+.+.+|.-=.|.-|.+ . -.+..=.+.+++|+|+|...|.+++..|+..++.+.+-=|+.|...+ +-++..
T Consensus 17 ~l~~~dw~~ileicD~I----~---~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~e 89 (140)
T 3ldz_A 17 MNTAEDWGLILDICDKV----G---QSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASE 89 (140)
T ss_dssp TSSSCCHHHHHHHHHHH----T---TSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHH
T ss_pred CCCCcCHHHHHHHHHHH----H---CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH
Confidence 35667886433333332 1 12233468999999999999999999999999999999999997553 667777
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHh
Q 000166 371 LLEKLKEKKPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 371 lLeklKEKK~~V~eA~~~aLda~~~~ 396 (1974)
|...++..-+.|++-+.+.+.+|...
T Consensus 90 l~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 90 VSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 76666667788999999999999864
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.61 E-value=7.8 Score=48.69 Aligned_cols=170 Identities=11% Similarity=0.086 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhhcCCCCC---CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHh-
Q 000166 302 RKDAVAELTKLASTKRIAP---GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKL- 375 (1974)
Q Consensus 302 RkEALe~L~~L~~~pKi~~---~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~lLekl- 375 (1974)
+.+|...|..|+....-.. ..++..+..|-.+|...|..+...|+.+|..|+.+-....... -...+|+|++-+
T Consensus 217 ~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl 296 (458)
T 3nmz_A 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 296 (458)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh
Confidence 6677777777764221000 1245667888888887788899999999999986411111112 135689999975
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCC----h---hhhHHHHHHHhhcCCch----hHHHHHHHHHHHHhh---CChhHHhH
Q 000166 376 KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVPL----VRSLTLNWVTFCIET---SSKAAVLK 441 (1974)
Q Consensus 376 KEKK~~V~eA~~~aLda~~~~~~~~----l---~~~~e~i~~al~~KnP~----vk~etl~~L~r~l~~---~~~~~~~~ 441 (1974)
......+++.+..||-.+... |.. + ...++.+...|.+..+. ++.++...| +.+.. ........
T Consensus 297 ~s~~~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL-~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 297 EVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL-RNVSSLIATNEDHRQI 374 (458)
T ss_dssp TCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHH-HHHHhcccCCHHHHHH
Confidence 446788888888888877653 211 1 12455666777776653 676655443 44443 22222222
Q ss_pred hh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 442 ~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
+. ...+|.++.+|.+.+.+|++.|+.+|..+.
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 22 247899999999999999999999998875
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=85.55 E-value=2.1 Score=46.78 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=74.9
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+.. . +..-.+.+++|+++|...|.+|+..|+.+++.+.+-=|+.|... .+-++..|
T Consensus 26 l~~~Dw~~ileicD~I~~---~----~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL 98 (171)
T 1juq_A 26 NRQEDWEYIIGFCDQINK---E----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL 98 (171)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc---C----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 456788654444443322 1 22356899999999999999999999999999999999999865 45678888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKEK------K~~V~eA~~~aLda~~~~ 396 (1974)
...++.| -..|++-+.+.+..|...
T Consensus 99 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 99 IKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8877654 379999999999999875
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=85.53 E-value=24 Score=43.34 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC
Q 000166 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1974)
Q Consensus 300 keRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK 379 (1974)
.+|.+.|.++.+|+=+. .|.-|.+++..|-....|.|+.|-.-.+..|+..++. . ..++..+++.+..-+.|.-
T Consensus 40 ~~Kl~~L~q~~EL~l~~--dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK--DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRDEN 113 (386)
T ss_dssp THHHHHHHHHHHHHHTT--CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 58999999999964221 2345778888888888899999999999999888863 2 2457788888888889999
Q ss_pred HHHHHHHHHHHHHHHHh----cC--CC-----------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000166 380 PTVAESLTQTLQAMHKA----GC--LN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1974)
Q Consensus 380 ~~V~eA~~~aLda~~~~----~~--~~-----------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1974)
++|+..+..|...++.. -| -+ +..+-+.|+..+.+.|..||..+++|+.+++-
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 99999888888877632 01 11 22334567777889999999999999999984
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.73 E-value=1.5e+02 Score=41.62 Aligned_cols=225 Identities=16% Similarity=0.164 Sum_probs=129.5
Q ss_pred hhhHHHHHHHHHHHhh---chHhHHHHHHHhhhh----------------------cCChh-hHHHHHHH-HHHHHHHh-
Q 000166 698 TRAHAMKCLTTFSEAV---GPGFIFERLYKIMKD----------------------HKNPK-VLSEGILW-MVSAVEDF- 749 (1974)
Q Consensus 698 ~r~~a~e~L~~~aE~~---~p~~V~~~l~~~~~~----------------------~KnPK-v~ae~l~w-l~~ai~eF- 749 (1974)
.|....+++..+|... +..++...+...+.. ..+|. ...|+... +..+++.+
T Consensus 439 ~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~ 518 (1204)
T 3a6p_A 439 SRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMF 518 (1204)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888999888765 666666666554332 01121 12233222 22222322
Q ss_pred --cc-Cccc---hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000166 750 --GV-SHLK---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1974)
Q Consensus 750 --G~-~~l~---~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~ 823 (1974)
.- ..++ ...++..+.. +...+|.+|...+.+++++..|+.. -+.-+...|+.=|..+.+. ++.
T Consensus 519 ~~~e~~~l~~~~~~~Ll~~ll~--~~~~~p~l~~~~i~~l~~l~~~~~~--------~p~~L~~vL~~ll~~l~~~-~~~ 587 (1204)
T 3a6p_A 519 RTLNREEIPVNDGIELLQMVLN--FDTKDPLILSCVLTNVSALFPFVTY--------RPEFLPQVFSKLFSSVTFE-TVE 587 (1204)
T ss_dssp HHSCTTCCCHHHHHHHHHHHHH--CCCSCHHHHHHHHHHHHHHGGGGGT--------CGGGHHHHHHHHHHHHHCC-TTC
T ss_pred cccccccccHHHHHHHHHHHHh--CCCCChHHHHHHHHHHHHHHHHHhc--------CchHHHHHHHHHHHhhccC-Ccc
Confidence 10 1222 2445555432 3457999999999999999988752 1222333334344433221 111
Q ss_pred CccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhh-
Q 000166 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG- 902 (1974)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~- 902 (1974)
..+.. + ++.+=.+|..|-..+..|+.++...+-|-. ..|...+..
T Consensus 588 ~~~~~------------------~---------------~~~~k~vr~~a~~al~~L~~~~~~~L~p~~-~~i~~~~~~~ 633 (1204)
T 3a6p_A 588 ESKAP------------------R---------------TRAVRNVRRHACSSIIKMCRDYPQLVLPNF-DMLYNHVKQL 633 (1204)
T ss_dssp STTSC------------------C---------------CHHHHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHH
T ss_pred ccccc------------------c---------------cHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHH
Confidence 11110 0 001224688888899999988756666653 666665544
Q ss_pred ----h-ccchhHhHHHHHHHHHHHHHHhcChhH--HhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhh
Q 000166 903 ----R-LYDSNKNLVMATLITLGAVASAMGPAV--EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 973 (1974)
Q Consensus 903 ----R-l~DsNk~lv~~al~ii~~lA~amG~~~--~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~ 973 (1974)
. +.+.++.....|+-++ |..+++.- ..|...+++++++.+.+.. ++. +......++..+|++..-
T Consensus 634 l~~~~~l~~~e~~~L~eal~~i---a~~~~~~~~~~~~l~~ll~P~~~~w~~~~--~~~-~~s~~~~f~~~~G~~~~~ 705 (1204)
T 3a6p_A 634 LSNELLLTQMEKCALMEALVLI---SNQFKNYERQKVFLEELMAPVASIWLSQD--MHR-VLSDVDAFIAYVGTDQKS 705 (1204)
T ss_dssp HHSTTTSCHHHHHHHHHHHHHH---HGGGCCHHHHHHHHHHHHHHHHHHHSCHH--HHH-HHHCHHHHHHHHTSSCC-
T ss_pred HhCcccccHHHHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHHHHHHHccHH--HHH-hhcCHHHHHHHhCCCCCc
Confidence 4 7788888888887665 65566532 3467889999999997533 444 455556777778877653
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=83.62 E-value=3.8 Score=44.44 Aligned_cols=96 Identities=18% Similarity=0.237 Sum_probs=73.4
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccch--hhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~--~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+.. . +..=.+.+++|+++|...|.+++..|+..++.+.+--|+.|...+ +-++..|
T Consensus 28 ~~~~Dw~~~leicD~I~~---~----~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el 100 (163)
T 1x5b_A 28 NTTEDWSLIMDICDKVGS---T----PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEV 100 (163)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC---C----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 566788765544444322 1 223468999999999999999999999999999999999998553 4477777
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKE-KKPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKE-KK~~V~eA~~~aLda~~~~ 396 (1974)
...++. .-+.|++-+.+.+..|...
T Consensus 101 ~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 101 RAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 666653 2368999999999999875
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=83.58 E-value=2.3 Score=56.07 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=67.2
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhhcCCCCC-CChhHHHH-HHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hh
Q 000166 290 FWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCR-TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SR 365 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~-~dy~dL~~-~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~ 365 (1974)
+.++|.|+...+|..|+..|..|+..+.-.. -.+..++. .|..++.|+|..|+..|+.++..|+..-|.++..| ..
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 6788999999999999999999886543222 12334454 56788899999999999999999998877776554 45
Q ss_pred hhHHHHHHHhc
Q 000166 366 FLLPVLLEKLK 376 (1974)
Q Consensus 366 ~~l~~lLeklK 376 (1974)
.++++|+.-|+
T Consensus 119 ~il~~L~~~l~ 129 (684)
T 4gmo_A 119 DVLTAIEHAAK 129 (684)
T ss_dssp THHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 57888777654
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.06 E-value=1.7e+02 Score=38.99 Aligned_cols=301 Identities=11% Similarity=0.100 Sum_probs=160.8
Q ss_pred hHhHHHHHHHhhhh-cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCch
Q 000166 715 PGFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (1974)
Q Consensus 715 p~~V~~~l~~~~~~-~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~ 793 (1974)
-.||.++.++.+.. .|+..++.-++..|+.+-..-+.....+..+++.+++. |.+.+...|.-|+..| .|.-+.+.
T Consensus 290 R~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~-L~~~~~~~~~~AvEgL--aYLSl~~~ 366 (778)
T 3opb_A 290 RTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINA-ISRRIVPKVEMSVEAL--AYLSLKAS 366 (778)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHH-TTTCCHHHHHHHHHHH--HHHTTSSH
T ss_pred HHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH-HhcCCccHHHHHHHHH--HHHhCCHH
Confidence 45666555554432 46778888888888877655455667888899999997 9988777799998877 57788999
Q ss_pred hHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccc--------ccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCC
Q 000166 794 IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV--------RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP 865 (1974)
Q Consensus 794 l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~--------r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~ 865 (1974)
+|..|.+-...+...++-- +.+...+ . .-++ ...+...........+.+=.+-+ .|. ..-.|.
T Consensus 367 VKe~L~~d~~~L~~Lv~ll--k~~~d~s-~-~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~--~p~---~~~~d~ 437 (778)
T 3opb_A 367 VKIMIRSNESFTEILLTMI--KSQKMTH-C-LYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXX--XPA---ADKVGA 437 (778)
T ss_dssp HHHHHHHCHHHHHHHHHHH--TTTCCTT-H-HHHHHHHHHHTTCCCCCCCCCCC-----------------------CCT
T ss_pred HHHHHHhCHHHHHHHHHHH--hCCCCch-H-HHHHHHHHHHhcCCCcccchhhhhhhhhhhhcccc--Ccc---cCcccc
Confidence 9998854444333332211 1111000 0 0000 00000000000000000000000 010 001111
Q ss_pred ChHHHHHHHHH-HHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhHHHH
Q 000166 866 DWKVRLESIEA-VNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSDIL 942 (1974)
Q Consensus 866 ~WK~RkEaLe~-v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~~il 942 (1974)
.+ ...+.+.+ ..+++- . ...+..|...++..+.++..+|+.++..|+.- +..+.. ..+.+++++
T Consensus 438 ~~-~~~~~v~~~~~~~l~-------e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL 504 (778)
T 3opb_A 438 EK-AAKEDILLFNEKYIL-------R---TELISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIIL 504 (778)
T ss_dssp HH-HHHHHHHHHHHHHTT-------T---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHH
T ss_pred cc-cchHHHHHHHHHHHH-------H---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHH
Confidence 12 22222222 222222 2 23788888888888899999999999999744 444433 235789999
Q ss_pred HHhccCchh---HHHHHHHHHHHHHHhccch---------hhhHHHHHHHhc-ccCC----------c-chHHHHHHHHH
Q 000166 943 KCLGDNKKH---MRECTLTVLDAWLAAVHLD---------KMVPYVTTALTD-AKLG----------A-EGRKDLFDWLS 998 (1974)
Q Consensus 943 ~~l~D~K~~---vR~aa~~alda~~~~~gl~---------~~~~~i~~~L~~-~~~~----------p-~~R~e~l~wL~ 998 (1974)
..|.+.... +|..|..||-...-++.-. ..++.+..-|.. +... + -.+.+.+.=|.
T Consensus 505 ~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALT 584 (778)
T 3opb_A 505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALT 584 (778)
T ss_dssp HHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHH
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHH
Confidence 999888655 8999999998887655322 223344444431 1100 0 11455554443
Q ss_pred HHhccCCCC--cc-----hh--hhhhhHhhhccCCChHHHHHHHHHHHHHHH
Q 000166 999 KQLTGLSGF--PD-----AA--HLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 999 ~~l~~~~~~--~~-----~~--~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
.|...+.. .+ .. ..+..+...|.+-+..||++|.+++--++.
T Consensus 585 -NLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 585 -NLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp -HHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred -HHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 33333311 11 11 123346666777788899988888877775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1974 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-15 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 8e-14 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-09 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-07 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 1e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 8e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.001 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 4e-05 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 4e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 0.001 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.2 bits (196), Expect = 2e-15
Identities = 153/1079 (14%), Positives = 314/1079 (29%), Gaps = 102/1079 (9%)
Query: 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 381
+V + + KL+ D N V A++ +G L ++ + ++ L + K
Sbjct: 42 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQ 98
Query: 382 VAESLTQTLQAM------HKAGCLNLVDVVEDV-----KTSVKNKVPLVRSLTLNWVTFC 430
+ + + L+ + +G +V + + K + V+ L+ +
Sbjct: 99 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 158
Query: 431 IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ ++ H + + L VR L + S G IE L
Sbjct: 159 LSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLS 217
Query: 491 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550
S + S G + + F +
Sbjct: 218 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 277
Query: 551 APASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVG 608
+ + V P + K T +D + E +++ D
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 609 QLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
WK R A L V + L + + + + E+NV+ +V
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKA-----DVF 392
Query: 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
+ + + LC E+ T + I + L+K MK
Sbjct: 393 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ--SQVPN---------IVKALHKQMK 441
Query: 728 DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGL--QSSAAATRNATIKLLGA 785
+ K+ K + V + + ++ L +SS++ + + L
Sbjct: 442 E-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 500
Query: 786 LHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 501 ILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 560
Query: 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
+ +K L++ D E E + + + +L L+ L
Sbjct: 561 YIK-----DLFTCTIKRLKAADI--DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL 613
Query: 905 -YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLDA 962
N+ + T+ L +A + + G IL N++ ++ TL+ LD
Sbjct: 614 ERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDI 673
Query: 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT 1022
+ + D + +L L D S +T
Sbjct: 674 LIKNYSDSLT------------------AAMIDAVLDELPPLISESDMHVSQMAISF-LT 714
Query: 1023 DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSK 1082
+ + IL L+ A+ + + + G + + +
Sbjct: 715 TLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR 774
Query: 1083 SSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDR 1142
+ S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 775 MLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTDS 830
Query: 1143 ERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR 1202
R+ + + E+ + + + +L +L E ++
Sbjct: 831 IRL---------LALLSLGEVGHHIDLSGQLELKSVIL-----------EAFSSPSEEVK 870
Query: 1203 KDIIEVLDILLRW-------FVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAA 1255
L + FVLQ S +L L E+ + G +
Sbjct: 871 SAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG---LKPYVE 927
Query: 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLV 1315
L++ E R + E ++ T LP + L S ++ R V V
Sbjct: 928 NIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAV 986
Query: 1316 GFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
F I H I LK+ + D +R+ AL T + I + +
Sbjct: 987 KFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (182), Expect = 8e-14
Identities = 135/1055 (12%), Positives = 295/1055 (27%), Gaps = 111/1055 (10%)
Query: 18 DRLLHKNWKVRNEANIDL-AALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
+++ + R A DL L D+ R++ + K + D N VQ+ A+ L
Sbjct: 10 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 69
Query: 77 IA-YLKAADADAGRYAKEVCDA----------IAAKCLTGRPKTVEKAQAVFMLWVELEA 125
K + +C I++ L + A + L +
Sbjct: 70 GPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-- 127
Query: 126 VDVFLDVMEKAIKNKVAKAV-VPAIDVMFQALSEFGAKIIPP-KRILKMLPELFDHQDQN 183
+ AI + +V + A+D+M LS G ++ IL L
Sbjct: 128 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLA 187
Query: 184 VRASSKGLTLELCRWIGKDPVKTILFEKMRD-TMKKELEVELVNVSGTARPTRKIRAEQD 242
VR + L G ++ + + + + + A +R+
Sbjct: 188 VRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG 247
Query: 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSER 302
+ L + + ++ + + E + + P + +K +
Sbjct: 248 EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 307
Query: 303 KDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362
+ E + D + D++ V A + + +
Sbjct: 308 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 367
Query: 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL----------------------- 399
+ + P L+ + KE++ V + ++ K
Sbjct: 368 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 427
Query: 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459
+ ++V+ + +K K R N +T + A+ + VP + LND +
Sbjct: 428 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSS 486
Query: 460 --EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517
++ A S L I + + ++ L + + + A + V+
Sbjct: 487 SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE-ALLVTQQLVK 545
Query: 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKL 577
+ +++ + + K+ G S L
Sbjct: 546 VIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 605
Query: 578 T----------EAPEDVEPSEMSLEEIESRLGSLIPADTVGQL--------KSAVWKERL 619
+ + +L I + +G+ + +L
Sbjct: 606 PNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKL 665
Query: 620 EAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679
+S+L ++ + + I L + P SE ++ V Q I + LA
Sbjct: 666 GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 725
Query: 680 KCVVLCLLGISERVADIKTRAHAMKCLTTF--------SEAVGPGFIFERLYKIMKDHKN 731
K L + V + A+ + F + +G + L +
Sbjct: 726 KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 785
Query: 732 PKVLSEGILWMVSAVEDFG--VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
+ + V + F +D S + R + LG +
Sbjct: 786 ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHH 845
Query: 790 VGPDIKGFLADVKPALLSALDAEYEK------------NPFEGTVVPKKTVRASESTSSV 837
+ ++K +L A + E+ + ++ S
Sbjct: 846 IDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKR 902
Query: 838 SSGGSDGLPR----------EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
L + L+K E + R E + K+ +
Sbjct: 903 QYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET 962
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
+ P L+G L + + + + S ++ K + D LK L D
Sbjct: 963 LLPR--------LKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1014
Query: 948 NKKHMRECTLTVLDA------WLAAVHLDKMVPYV 976
++R L ++ L LD ++P++
Sbjct: 1015 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 2e-11
Identities = 107/978 (10%), Positives = 275/978 (28%), Gaps = 80/978 (8%)
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917
L++ + S D R + + L++ + ++ ++ + L D N + +
Sbjct: 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67
Query: 918 TLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL------------DAWLA 965
LG + S + E + ++ + + +K+ +R+ + L + LA
Sbjct: 68 CLGPLVSKVK---EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 966 AVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTD 1023
A K+ +T+A+ + + + D ++ L+ G +L +T
Sbjct: 125 ANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083
VRK + ++ + G ++ +L + N + + +
Sbjct: 184 PRLAVRKRTIIALGHLVMSCGNIVFVDLIEH--------LLSELSKNDSMSTTRT-YIQC 234
Query: 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1143
+ + + A + + ++ + I V +V D ++ + E
Sbjct: 235 IAAISRQAGHRIGEYLEKIIPLVV---------KFCNVDDDELREYCIQAF--------E 277
Query: 1144 RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRK 1203
V R K P + I + + Y + + DG + +
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 1204 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVE 1263
D ++ + R +T + EF + L E+ A +
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 397
Query: 1264 KSGHNIEKVREKMRELTKQIVNFYSA------TKTLPYILEGLRSKNNRTRIECVDLVGF 1317
+ + + + ++ K+ +TR C +++
Sbjct: 398 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTE 457
Query: 1318 LI---DHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
L+ + L I + ++ AL+ L ++ +
Sbjct: 458 LVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL 517
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
+K+ + + L + + + + +
Sbjct: 518 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAAD 577
Query: 1435 MRRNYGHSELHVERS---------------IMPRALASVSGPTDWNEAL----DIISFGS 1475
+ + + + L + + I
Sbjct: 578 IDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPL 637
Query: 1476 PEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRS 1535
+ LA + ++ + D L+ ++ + ++
Sbjct: 638 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL 697
Query: 1536 CKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLML 1595
+ Q + A + S I+ +L L V L A+
Sbjct: 698 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQ 757
Query: 1596 KILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQS 1655
++ ++ L+ +L S+ + +S+ + + + L C + V+
Sbjct: 758 ALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ 817
Query: 1656 TIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLR--MVKTVLHELVKLRGAAIKGH 1713
I DV R SI + E + L+ +++ +++ AA
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 877
Query: 1714 LSMVPIDMKPQ-PIILAYIDLNLETLAAARM-----LTSTGPGGQTHWGDSAANNPTSAT 1767
S+ ++ P +L I + ++S G + ++
Sbjct: 878 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 937
Query: 1768 NSADAQLKQELAAIFKKI 1785
A+ + +A K+
Sbjct: 938 ECAEEGTRNVVAECLGKL 955
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.9 bits (159), Expect = 4e-11
Identities = 117/1057 (11%), Positives = 273/1057 (25%), Gaps = 126/1057 (11%)
Query: 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRI-------RELGPLFKKTVADSNAPVQD 70
+L ++R+ ++I L + + + G L + VQ
Sbjct: 90 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQL 149
Query: 71 KALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFL 130
+ALD + L + + + + + R ++ V VF+
Sbjct: 150 EALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV 209
Query: 131 DVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP-----KRILKMLPELFDHQDQNVR 185
D++E + + Q ++ + ++I+ ++ + + D +R
Sbjct: 210 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 269
Query: 186 ASSKGLTLELCR-------------------------WIGKDPVKTILFEKMRDTMKKEL 220
R D D +
Sbjct: 270 EYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD 329
Query: 221 EVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 280
+ S + K+R K L + + ++ + + +
Sbjct: 330 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSP----ALISRFKEREE 385
Query: 281 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF-TEVCRTLKKLITDVNI 339
+ + +K T+ + + + T + + L K + + ++
Sbjct: 386 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 445
Query: 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQAMHKAG 397
+ L L + L+P ++ L +K + + L +
Sbjct: 446 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 505
Query: 398 CLNLVDVVED-----VKTSVKNKVPLVRS---LTLNWVTFCIETSSKAAVLKVHKDYVPI 449
+ V V + + S L + I + + +
Sbjct: 506 SPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDL 565
Query: 450 CMECLN-----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI---- 500
+ D EV++ A S + I ++ L + + +L I
Sbjct: 566 FTCTIKRLKAADIDQEVKERAISCMGQIICNL-GDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 501 -AGSGGDVATGTSSARVQTSGGSVPSV----EASESSFVRKSAASMLSGKRPVSAAPASK 555
+ +A ++ G + ++ S L + +
Sbjct: 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 684
Query: 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEP-SEMSLEEIESRLGSLIPADTVGQLKSAV 614
+ + A + +++ + GS++ +
Sbjct: 685 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744
Query: 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML---PGWSEKNVQVQQQVIEVINYLA 671
L A+ Q + + L+R++ + + Q + + + L
Sbjct: 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804
Query: 672 ATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK--DH 729
K V + + + R A+ L + E I++
Sbjct: 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 864
Query: 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
+ +V S +A G + + S L +
Sbjct: 865 PSEEVKS-------AASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSA 917
Query: 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR-- 847
+K ++ ++ LL + E + ++ L +
Sbjct: 918 SVVGLKPYVENIWALLLKHCECAEE---------------------GTRNVVAECLGKLT 956
Query: 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS 907
P L L S R + AV + + + I P G L D
Sbjct: 957 LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDP 1015
Query: 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR-------------- 953
+ N+ L+T + A + VL + K+ +R
Sbjct: 1016 DLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDG 1075
Query: 954 --------ECTLTVLDAWLAAVHLDKMVPYVTTALTD 982
EC T+LD+ L + + + + +V L D
Sbjct: 1076 LDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD 1112
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.9 bits (146), Expect = 2e-09
Identities = 122/1002 (12%), Positives = 283/1002 (28%), Gaps = 99/1002 (9%)
Query: 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472
+ R + N + ++ S + V + ++ L D EV++ A L +
Sbjct: 13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPL 72
Query: 473 AKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532
V +E ++ L + M+ S+
Sbjct: 73 VSKVKEYQVETIVDTL-------CTNML----------------------------SDKE 97
Query: 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGK-QETSKLTEAPEDVEPSEMSL 591
+R ++ L K + P + G + + K +G+ E + +
Sbjct: 98 QLRDISSIGL--KTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 155
Query: 592 EEIESRLGSLIPAD-------TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644
++ SR G L+ + QL S R I +L V + N V+++
Sbjct: 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-IVFVDLIEH 214
Query: 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHA 702
L+ L ++ + I+ I ++ A + + + + + + R +
Sbjct: 215 LLSELS--KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYC 272
Query: 703 MKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL 756
++ +F I K + N E
Sbjct: 273 IQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDE-----DEDENAMDADGGDD 327
Query: 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816
D + + + R A K L A+ + F V PAL+S E
Sbjct: 328 DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 387
Query: 817 PFEGTV-------VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV 869
+ + ++ G + + L K ++ K
Sbjct: 388 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT 447
Query: 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGP 928
R + +++ + + G + S+ NL + L L + P
Sbjct: 448 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP 507
Query: 929 -AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------------HLDKMVP 974
+ ++ ++ C+GD + L V + + ++ +
Sbjct: 508 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFT 567
Query: 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEA 1034
L A + E ++ + + + L + K+ R
Sbjct: 568 CTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVK 627
Query: 1035 CIVEILRAGGQETIEKNLKDIQ---GPALALILERIKLNGASQVSMGPTSKSSSKVPKSA 1091
+ I + + + L + L +KL S + + + S S
Sbjct: 628 ALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI 687
Query: 1092 SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 1151
+ + S + ++ A + + + + R + +
Sbjct: 688 DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGG 747
Query: 1152 FEDPRIEQIQEL-----ENDMMKYFREDLHRRLLSTD-FKKQVDGLEMLQKALPSIRKDI 1205
++ Q L N L + S + K + ++ +
Sbjct: 748 ALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC 807
Query: 1206 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1265
+ ++ F+ S +T +++L L +L + G+ + S ++E
Sbjct: 808 PKEGPAVVGQFIQDVKNSRSTDSIRLLALL-----SLGEVGHHIDLSGQLELKSVILEAF 862
Query: 1266 GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE 1325
E+V+ I + + LP++L+ + S+ R + L +
Sbjct: 863 SSPSEEVKSAASYALGSISV-GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG 921
Query: 1326 ISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
+ +++ ++ + R L I E +
Sbjct: 922 LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL 963
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (119), Expect = 2e-06
Identities = 59/519 (11%), Positives = 146/519 (28%), Gaps = 63/519 (12%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVA---------DSN 65
P + +K+ +EA + L I + P K D +
Sbjct: 520 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 579
Query: 66 APVQDKALDALIAYLKAADADAGRYAKEVC--------DAIAAKCLTGRPKTVEKAQAVF 117
V+++A+ + + + G + I + +
Sbjct: 580 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI 639
Query: 118 MLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177
L L L + + + + A+D++ + S+ + + ++ P L
Sbjct: 640 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPP-LI 698
Query: 178 DHQDQNVRASSKGLTLELCRWIGK----------DPVKTILFEKMRDTMKKELEVELVNV 227
D +V + L + + + ++ + ++
Sbjct: 699 SESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQA 758
Query: 228 SGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEK 287
+ + L + S+ ++S + + P + + +
Sbjct: 759 LVVTGTNNLGYMDLLRMLTGPVYSQSTAL-THKQSYYSIAKCVAALTRACPKEGPAVVGQ 817
Query: 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347
+ S R A+ L ++ I E+ + + + + V A
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVG--HHIDLSGQLELKSVILEAFSSPSEEVKSAASY 875
Query: 348 AIGNLARGLRTHF----------SGSSRFLL-----PVLLEKLKEKKPTVAESLTQTLQA 392
A+G+++ G + ++LL ++ E++ L
Sbjct: 876 ALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK 935
Query: 393 MHK----------AGCL------NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436
+ A CL + ++ +K + + RS + V F I +
Sbjct: 936 HCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQ 995
Query: 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
+ K+ + ++ L D VR A + A +
Sbjct: 996 PIDPLL-KNCIGDFLKTLEDPDLNVRRVALVTFNSAAHN 1033
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 3e-07
Identities = 73/598 (12%), Positives = 165/598 (27%), Gaps = 40/598 (6%)
Query: 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 827
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERT--RSELLPFLTDTIYDEDE------------- 63
Query: 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V + + + G P + P L + VR +++E++ I E +
Sbjct: 64 VLLALAEQLGTFTTLVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS-- 119
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
P+ F L RL + + G + + D
Sbjct: 120 --PSDLEAHFVPLVKRLAGGDW--FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007
+ +R + L + + LD + + ++ + L +
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 1008 PD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065
+ A ++ A DKS VR E+ +A G E + +L +
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 1066 RIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
++ + +V + S+ + + +S K A IM +
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 1126 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQEL--ENDMMKYFREDLHRRLLSTD 1183
+ + ++ + ++ + E+ + + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 1184 FKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243
++ ++ +E + + + + L L +L +
Sbjct: 416 WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA--WLVDHVYAIREAATSNLKKLVEKFG 473
Query: 1244 DEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS----ATKTLPYILEG 1299
E A +P ++ SG R + LP +L
Sbjct: 474 KEWAH------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRM 527
Query: 1300 LRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLAT 1357
R + + Q + I+ LT ++D +++ A L
Sbjct: 528 AGDPVANVRFNVAKSLQKIGPILDNSTL-QSEVKPILEKLTQDQDVDVKYFAQEALTV 584
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 1e-06
Identities = 56/467 (11%), Positives = 138/467 (29%), Gaps = 15/467 (3%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKAL 73
+P RL +W + L ++C EL F+ +D V+ A
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KAELRQYFRNLCSDDTPMVRRAAA 185
Query: 74 DAL--IAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLD 131
L A + D + + + + R VE + L + + + +
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRA---SS 188
+ +A ++K + D + G +I + + D + + A
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 189 KGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQE 248
K L ++ + + + +++ + + ++ I + +
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 249 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
+ E ++ +D V + L+ E + KW R +
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368
+ LA + D ++ + D A+ A + L ++ ++
Sbjct: 426 MPLLAGQLGVEFFDE-KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATII 482
Query: 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNW 426
P +L + + + + + ++ ++ V + V VR
Sbjct: 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKS 542
Query: 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473
+ + + + PI + D +V+ A L ++
Sbjct: 543 LQKIGPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 8e-06
Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 11/195 (5%)
Query: 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN 908
+S P +V+ E W+VRL IE + + + L D
Sbjct: 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL---VDHV 454
Query: 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968
+ A L + G E + ++ +L GD R TL ++
Sbjct: 455 YAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512
Query: 969 LD----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024
D M+P V D A R ++ L K L + + D+
Sbjct: 513 QDITTKHMLPTVLRMAGDPV--ANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQ 570
Query: 1025 SSDVRKAAEACIVEI 1039
DV+ A+ + +
Sbjct: 571 DVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 0.001
Identities = 81/612 (13%), Positives = 171/612 (27%), Gaps = 44/612 (7%)
Query: 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNI 339
D L P+ + ++ R +++ +L+ +A + +E+ L I D
Sbjct: 7 DSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIALALGVER-TRSELLPFLTDTIYD-ED 62
Query: 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399
V + + +G + LLP L ++ V + ++L+A+ +
Sbjct: 63 EVLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI--SHEH 118
Query: 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459
+ D+ VK + V + +D TP
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTP 178
Query: 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519
VR A A +G ++ + S + + V A V +
Sbjct: 179 MVR-------RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231
Query: 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSA---APASKKGGPVKPSAKKDGSGKQETSK 576
+ + AA S + +K + + Q K
Sbjct: 232 QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291
Query: 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW-----KERLEAISSLRQQVEA 631
EA S E E+ + Q+ + + + +
Sbjct: 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351
Query: 632 VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISE 691
L + I L L ++ +V+ +I ++ + +L +
Sbjct: 352 SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA 411
Query: 692 RVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS--EGILWMVSAVEDF 749
A + R ++ + + +G F E+L + V + E + + +
Sbjct: 412 EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471
Query: 750 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 809
+I R T+ + L + G DI + P +L
Sbjct: 472 FGKEWAHATIIPKVLA-MSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMA 528
Query: 810 -DAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWK 868
D V ++ + + L + + P L K + D
Sbjct: 529 GDPVAN--------VRFNVAKSLQKIGPI-------LDNSTLQSEVKPILEKLTQDQDVD 573
Query: 869 VRLESIEAVNKI 880
V+ + EA+ +
Sbjct: 574 VKYFAQEALTVL 585
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 4e-05
Identities = 51/336 (15%), Positives = 116/336 (34%), Gaps = 29/336 (8%)
Query: 614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ----QQVIEVINY 669
+ + LEAI + Q ++ Q D+S EIL ++ + E + V+ ++ + +
Sbjct: 145 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEF 203
Query: 670 LAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDH 729
A K ++ ++ ++ + + D + R A++ L Y+ M+ +
Sbjct: 204 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI---------MSLYYQYMETY 254
Query: 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
P I + V+ ++ + C + + A+ + KF
Sbjct: 255 MGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 312
Query: 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRED 849
+L + L+ D + + + + + +D
Sbjct: 313 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT-----------CCEDD 361
Query: 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909
I P + + +++PDW+ R ++ A ILE + L + D +
Sbjct: 362 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 421
Query: 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945
+ T+G + + A L+ +L+CL
Sbjct: 422 VVRDTAAWTVGRICELLPEAAINDV--YLAPLLQCL 455
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 4e-04
Identities = 70/725 (9%), Positives = 202/725 (27%), Gaps = 57/725 (7%)
Query: 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
I + P++ + +++A+ D + H +L+ D +
Sbjct: 95 QIKTNALTALVS-IEPRIAN-AAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVK 152
Query: 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836
A++ LG + + P + ++ +L A+ + V + A + +
Sbjct: 153 RASLLALGYMCESADPQSQALVSSSNN-ILIAIVQGAQSTETSKAVR----LAALNALAD 207
Query: 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGEL 896
+ + RE + ++ ++ D +V+ + + KI+ + ++P L
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL 267
Query: 897 FGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECT 956
+ + N + T+ + + ++ L+ +++
Sbjct: 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ-FPQSPLQSYNFALSSIKDVV 326
Query: 957 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016
+L+ + + + A L + L L
Sbjct: 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLE-------------F 373
Query: 1017 ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVS 1076
+T + R+AA I+ + + L L +N S
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL------MNDQSLQV 427
Query: 1077 MGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKD 1136
T+ ++ S + + G + ++ + + +
Sbjct: 428 KETTAWCIGRIADSVAESIDPQ-QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE 486
Query: 1137 SNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGL-EMLQ 1195
+ + L + E R + V+ + +
Sbjct: 487 ATPSPIYNFY----------PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536
Query: 1196 KALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTL-RDEGYSLTESEA 1254
+ SI +++ L + Q + L ++ + + + R S+
Sbjct: 537 ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD 596
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT------KTLPYILEGLRSKNNRTR 1308
+ + + + + + PY+L+ L ++
Sbjct: 597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656
Query: 1309 IECVDLVGFLIDHHGAEISGQLKSL--QIVASLTAER-DGEIRKAALNTLATGYKILGED 1365
I V + + + + ++ + ++ E++ A L+ +G D
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716
Query: 1366 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1425
Y+ + + + + + E + + + +V + I D
Sbjct: 717 FIPYLNDIMALCVAAQNTKPENGTLEAL--------DYQIKVLEAVLDAYVGIVAGLHDK 768
Query: 1426 SQSVS 1430
+++
Sbjct: 769 PEALF 773
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 0.001
Identities = 70/591 (11%), Positives = 171/591 (28%), Gaps = 61/591 (10%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY----DSNKNL 911
P L L+S D+ + A+ KI E++ + + + + S+ +
Sbjct: 129 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 188
Query: 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA------ 965
+ + + A+ ++ GD + +R+ L L
Sbjct: 189 RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 248
Query: 966 AVHLDKMVPYVTTALTDAKLG-AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI-AMTD 1023
H+ +V Y+ D A + + L++Q L P + M
Sbjct: 249 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 308
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083
D+ + ++ I + A + I+ +
Sbjct: 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTI 368
Query: 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1143
S + S ++P + ++ ++ V+ +L + + +
Sbjct: 369 SDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 428
Query: 1144 RM----------VVRRFKFEDPRIEQI-------------QELENDMMKYFREDLHRRLL 1180
M +++ + + I + + +K +L +R+L
Sbjct: 429 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 488
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
++ + Q +++ L +L V F K LL + + + L D
Sbjct: 489 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 548
Query: 1241 TLRD-------------------EGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTK 1281
++ + + L CL + + +
Sbjct: 549 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 608
Query: 1282 QIVNFYSAT--KTLPYILEGLRSKNNRT--RIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337
+ VN T + + + + + I +DL+ L + G I + I+
Sbjct: 609 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 668
Query: 1338 SL---TAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1385
+ ++ E+R+++ L K + + + + L+ F
Sbjct: 669 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1974 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.92 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.87 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.81 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.69 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.55 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.48 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.33 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.16 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.1 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.03 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.97 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.73 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 97.81 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 97.46 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.39 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.35 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 97.32 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 97.07 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 96.89 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 96.59 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 96.5 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 96.41 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.3 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.13 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 96.06 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 95.5 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 95.49 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 92.97 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 92.66 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 92.04 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 89.83 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 89.64 | |
| d1elka_ | 153 | Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | 88.89 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 84.97 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 84.76 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 83.96 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 83.21 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 82.98 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.1e-19 Score=245.16 Aligned_cols=947 Identities=15% Similarity=0.138 Sum_probs=552.5
Q ss_pred cccccCCCChhHHHHHHHHHHHHhhhcC-CCCChhhhhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhhHH
Q 000166 16 WEDRLLHKNWKVRNEANIDLAALCDSIT-DPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEV 94 (1974)
Q Consensus 16 l~erL~hK~WKaRl~ayeel~~~f~~~~-d~~d~~~~~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~~~~v 94 (1974)
|-|++.|.++--|..|..+|.+.++... .-++..+.+....+-+.+.|+|..+|..|+.++..++..... .....+
T Consensus 8 ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~---~~~~~l 84 (1207)
T d1u6gc_ 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVETI 84 (1207)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHHH
T ss_pred HHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH---hhHHHH
Confidence 4578999999999999999998875321 112223444444455689999999999999999888766532 234566
Q ss_pred HHHHHhhhhcCChhhHHHHHHHHHHHH-hhch-------hhhHHHH----HHHH-hhccCchhHHHHHHHHHHHHHhhCC
Q 000166 95 CDAIAAKCLTGRPKTVEKAQAVFMLWV-ELEA-------VDVFLDV----MEKA-IKNKVAKAVVPAIDVMFQALSEFGA 161 (1974)
Q Consensus 95 ~~~lveK~L~~r~ktk~~a~e~~l~~v-E~e~-------~~~v~e~----ll~~-~~~K~PKvvaaai~~l~~~l~~FG~ 161 (1974)
+..|+...++.....++.+.-++-..+ ++.. ...+... +... .+++++.+..+|+..+.+++..||.
T Consensus 85 ~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~ 164 (1207)
T d1u6gc_ 85 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 164 (1207)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH
Confidence 777777766666666665544443333 2211 1122222 2332 3457789999999999999999998
Q ss_pred CccC-hhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHH---hhhchH--------HHHHHHHHHHHhcCC
Q 000166 162 KIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTIL---FEKMRD--------TMKKELEVELVNVSG 229 (1974)
Q Consensus 162 kvv~-~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L---~~~Lkp--------~q~keLe~efek~~~ 229 (1974)
...+ ...+++.+-..+.|.+..||..|...+..+..++|...+...+ ++.+.+ .-.+-|...+.....
T Consensus 165 ~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 244 (1207)
T d1u6gc_ 165 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 244 (1207)
T ss_dssp SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG
T ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch
Confidence 6554 5668999999999999999999999999999998864332221 111110 000111111111000
Q ss_pred CCCC---c-------------chhhhHHhHHhhhhhcccCCC-------------------CCCCCCCCCCCCCCCCccc
Q 000166 230 TARP---T-------------RKIRAEQDKELGQELISEDVG-------------------PGPSEESTADVPPEIDEYE 274 (1974)
Q Consensus 230 ~~~P---~-------------R~~Rs~q~~~~~~~a~~~~~~-------------------~~~~~~~~~~~~~~iDp~d 274 (1974)
...| . -.+|...-.. .+......+ .++.. .......+.+-.+
T Consensus 245 ~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~--l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~-~~~~~~~~~~~~~ 321 (1207)
T d1u6gc_ 245 RIGEYLEKIIPLVVKFCNVDDDELREYCIQA--FESFVRRCPKEVYPHVSTIINICLKYLTYDPNY-NYDDEDEDENAMD 321 (1207)
T ss_dssp GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH--HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHH--HHHHHHhChhhhhhhHHHHHHHHHHHHhcCcch-hhhhHHHHHhhhh
Confidence 0000 0 0001000000 000000000 00000 0000000000001
Q ss_pred cCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 000166 275 LVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353 (1974)
Q Consensus 275 l~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA 353 (1974)
.....+..... +.++....+..|+.|+.+++-|..++. .|.....-|.+++..|-.++.|.+-.|...++.+++.+.
T Consensus 322 ~~~~~~~~~~~--~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~ 399 (1207)
T d1u6gc_ 322 ADGGDDDDQGS--DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 399 (1207)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred hhccchhhhhH--HHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 11111111112 356677888999999999999988764 454444557788999999999999999999999999998
Q ss_pred HHhccc-------------------cccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hhhhHHHHHH
Q 000166 354 RGLRTH-------------------FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LVDVVEDVKT 410 (1974)
Q Consensus 354 ~gLr~~-------------------F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~----l~~~~e~i~~ 410 (1974)
+..+.. +..+...+++.+...++++...++.++..++..++...... +..+++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~ 479 (1207)
T d1u6gc_ 400 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF 479 (1207)
T ss_dssp HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred HhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHH
Confidence 876532 33556678899999999999999999999999988752222 3455667777
Q ss_pred HhhcCCc--hhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH------HH
Q 000166 411 SVKNKVP--LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP------LE 482 (1974)
Q Consensus 411 al~~KnP--~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~------l~ 482 (1974)
.+.++++ .+|.+++.++...+..+....+.+.+..+.+.+..+++|....+|..|..+++.+.+.++... +.
T Consensus 480 ~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~ 559 (1207)
T d1u6gc_ 480 SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 559 (1207)
T ss_dssp HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhH
Confidence 8877664 688999999999999887777777778899999999999999999999999999999876311 11
Q ss_pred HHhhcC-------------CHHHHHHHHHHH----hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCC
Q 000166 483 RSIEKL-------------DDVRRNKLSEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGK 545 (1974)
Q Consensus 483 ~~l~~L-------------d~~kk~KI~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 545 (1974)
+++.++ |..-+.....++ ...+.. .. +.- ......--... .
T Consensus 560 ~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~---~~--------------~~~--~~~l~~l~~~l---~ 617 (1207)
T d1u6gc_ 560 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN---LG--------------SDL--PNTLQIFLERL---K 617 (1207)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG---CC--------------THH--HHHHHHHHHHT---T
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhh---hH--------------HHH--HHHHHHHHHHh---c
Confidence 222111 111111111111 111000 00 000 00000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHH
Q 000166 546 RPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSL 625 (1974)
Q Consensus 546 ~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l 625 (1974)
.+... ..+ .+.-. ...... ....+. .-+. .+ -+.+...+.+.+|..|..+++.+
T Consensus 618 ~~~~r------------~~a----~~~l~-~i~~~~---~~~~~~-~~l~----~~-~~~l~~~l~~~~~~~r~~al~~L 671 (1207)
T d1u6gc_ 618 NEITR------------LTT----VKALT-LIAGSP---LKIDLR-PVLG----EG-VPILASFLRKNQRALKLGTLSAL 671 (1207)
T ss_dssp SSSHH------------HHH----HHHHH-HHTTCS---SCCCCH-HHHH----HH-HHHHHHHTTSCCHHHHHHHHHHH
T ss_pred chhhH------------HHH----HHHHH-HHHHhc---cchhHH-HHHH----HH-HHHHHHhcccchHHHHHHHHHHH
Confidence 00000 000 00000 000000 000111 1111 11 13467888999999999999999
Q ss_pred HHHHHhhhc-cch-hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHH
Q 000166 626 RQQVEAVQN-LDQ-SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAM 703 (1974)
Q Consensus 626 ~~~v~~~~~-~~~-~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~ 703 (1974)
...+..... ... ..+.++..+. +..+|++.++.+..++++..++...+.........+++.++.-+.+.-....+.
T Consensus 672 ~~l~~~~~~~~~~~~~~~~l~~l~--~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~ 749 (1207)
T d1u6gc_ 672 DILIKNYSDSLTAAMIDAVLDELP--PLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGAL 749 (1207)
T ss_dssp HHHHHHCCTTCCHHHHHHHHTTCG--GGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHH
T ss_pred HHHHHhccccchhHHHhhHHHhhc--cccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhH
Confidence 888877432 221 1233443332 557899999999999999988765433222223333444433333322222222
Q ss_pred HHHHHHHH------------------------------------------------hhchH--hHHHHHHHhh-hhcCCh
Q 000166 704 KCLTTFSE------------------------------------------------AVGPG--FIFERLYKIM-KDHKNP 732 (1974)
Q Consensus 704 e~L~~~aE------------------------------------------------~~~p~--~V~~~l~~~~-~~~KnP 732 (1974)
+.+..+.. ..+.. .++.+++... ....++
T Consensus 750 ~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~~~~~~ 829 (1207)
T d1u6gc_ 750 SAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD 829 (1207)
T ss_dssp HHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCH
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccchH
Confidence 22222111 11000 0111111111 123456
Q ss_pred hhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000166 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1974)
Q Consensus 733 Kv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~E 812 (1974)
.++..++..+..+...+|... ...+.+.+... |++.++.||.+|...+|.+...-.+.. -|.+++.++.+
T Consensus 830 ~~~~~al~~Lge~~~~~~~~~--~~~l~~~l~~~-l~~~~~~vr~aAa~aLg~l~~~~~~~~-------lp~il~~l~~~ 899 (1207)
T d1u6gc_ 830 SIRLLALLSLGEVGHHIDLSG--QLELKSVILEA-FSSPSEEVKSAASYALGSISVGNLPEY-------LPFVLQEITSQ 899 (1207)
T ss_dssp HHHHHHHHHHHHHHHHSCCCS--CTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHHTHHHH-------HHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccccc--hHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHhhHHHH-------hHHHHHHHhcC
Confidence 778888888888887777643 34566666776 999999999999999998765433222 23333333211
Q ss_pred HhcCCCCCCCCCccccccc--cCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCC
Q 000166 813 YEKNPFEGTVVPKKTVRAS--ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP 890 (1974)
Q Consensus 813 F~K~~~~~~p~p~R~~r~~--~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p 890 (1974)
-. .|...-. .+.-. ..+..+.. +...+|-+.++..+++.+|.+|..+.+-+.+++.-.
T Consensus 900 ~~----------~~~~ll~al~ei~~-~~~~~~~~---~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~------ 959 (1207)
T d1u6gc_ 900 PK----------RQYLLLHSLKEIIS-SASVVGLK---PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID------ 959 (1207)
T ss_dssp GG----------GHHHHHHHHHHHHH-SSCSTTTH---HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS------
T ss_pred ch----------HHHHHHHHHHHHHH-hcchhhhH---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC------
Confidence 00 0000000 00000 00000110 122334455667789999999999999999887521
Q ss_pred CCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--
Q 000166 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-- 968 (1974)
Q Consensus 891 ~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-- 968 (1974)
..++++.|..++.|.|..+...++.++..+...+|..+..|.+.+++.++..|+|....||.+|+.|+++.+..-+
T Consensus 960 --~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~l 1037 (1207)
T d1u6gc_ 960 --PETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSL 1037 (1207)
T ss_dssp --GGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGG
T ss_pred --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 2678999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred chhhhHHHHHHHhc-ccC-------------------CcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHH
Q 000166 969 LDKMVPYVTTALTD-AKL-------------------GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDV 1028 (1974)
Q Consensus 969 l~~~~~~i~~~L~~-~~~-------------------~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dV 1028 (1974)
+.+.++.+...|-+ -.+ +-++|+..++-|..-+..+...-+...++-.+..+|.|- -|+
T Consensus 1038 i~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~~~~~~~~~gl~d~-~di 1116 (1207)
T d1u6gc_ 1038 IRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDH-YDI 1116 (1207)
T ss_dssp TGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSSC-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHhcccch-HHH
Confidence 23444444444421 111 123777778777777766555445666666677778884 588
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHhhc
Q 000166 1029 RKAAEACIVEILRAGGQETIEKNLKD 1054 (1974)
Q Consensus 1029 RkaA~~~L~~~m~~~G~~~~~~~~~~ 1054 (1974)
|-.+...|..++..... .+...++.
T Consensus 1117 ~~~~~~~l~~l~~~~~~-~~~~~l~~ 1141 (1207)
T d1u6gc_ 1117 KMLTFLMLVRLSTLCPS-AVLQRLDR 1141 (1207)
T ss_dssp HHHHHHHHHHHHHSCCH-HHHTTTTT
T ss_pred HHHHHHHHHHHHHhCcH-HHHHHHHH
Confidence 88888777776665443 33344433
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3e-17 Score=223.75 Aligned_cols=902 Identities=14% Similarity=0.127 Sum_probs=510.8
Q ss_pred hhc-CChhhHHHHHHHHHHHHhhc---hhhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCcc----C---hhHHH
Q 000166 102 CLT-GRPKTVEKAQAVFMLWVELE---AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKII----P---PKRIL 170 (1974)
Q Consensus 102 ~L~-~r~ktk~~a~e~~l~~vE~e---~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv----~---~K~il 170 (1974)
+|. .-+..+..|..|+-.++..- ..+.+++.|...+..++.++.-.+..++..++.+++.... . .+.++
T Consensus 53 ~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~ 132 (1207)
T d1u6gc_ 53 LLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKIT 132 (1207)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence 454 34555666666666665542 2345677777777778888888888888888887765321 1 12233
Q ss_pred hhchhh-hcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhh
Q 000166 171 KMLPEL-FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQEL 249 (1974)
Q Consensus 171 k~l~~l-f~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a 249 (1974)
..+... ....+..||.++..++.++....|.. +.+.. +
T Consensus 133 ~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~-l~~~~-~--------------------------------------- 171 (1207)
T d1u6gc_ 133 GRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL-LVNFH-P--------------------------------------- 171 (1207)
T ss_dssp HHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS-CTTTH-H---------------------------------------
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHh-hHHHH-H---------------------------------------
Confidence 333332 34567778888887777777777752 21111 0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHH
Q 000166 250 ISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRT 329 (1974)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~ 329 (1974)
+|+ +.+...+.+.+|..|+.|+..|..++.. +....|.+++..
T Consensus 172 ------------------------------~il-----~~l~~~l~~~~~~vR~~A~~~l~~l~~~--~~~~~~~~~~~~ 214 (1207)
T d1u6gc_ 172 ------------------------------SIL-----TCLLPQLTSPRLAVRKRTIIALGHLVMS--CGNIVFVDLIEH 214 (1207)
T ss_dssp ------------------------------HHH-----HHHGGGGGCSSHHHHHHHHHHHHHHTTT--C----CTTHHHH
T ss_pred ------------------------------HHH-----HHHHHHhCCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHH
Confidence 010 1355567778899999999988877542 122335566776
Q ss_pred HHHHhc-chhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-hhhhHHH
Q 000166 330 LKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-LVDVVED 407 (1974)
Q Consensus 330 Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~-l~~~~e~ 407 (1974)
+-+.+. +.+..+...+++|++.|++..+..|.+|...++|.+++.+.+....+|+++..++..+... |.. +...+++
T Consensus 215 ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~ 293 (1207)
T d1u6gc_ 215 LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR-CPKEVYPHVST 293 (1207)
T ss_dssp HHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC-TTCCCHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh-ChhhhhhhHHH
Confidence 666665 7777778889999999999999999999999999999999999999999999999999876 422 1222222
Q ss_pred HHH-----------------------------------------HhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhh
Q 000166 408 VKT-----------------------------------------SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1974)
Q Consensus 408 i~~-----------------------------------------al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1974)
+.. .....++.+|..+...|...+...+. .+..+...+
T Consensus 294 ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~-~l~~~~~~~ 372 (1207)
T d1u6gc_ 294 IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE-MLPEFYKTV 372 (1207)
T ss_dssp HHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCT-THHHHHTTT
T ss_pred HHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 221 12345678898888888877766543 334566789
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCC
Q 000166 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSV 526 (1974)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (1974)
+|.++..+.|+++.||.++..+++.+.+..+..... ...
T Consensus 373 ~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~--------------------------------~~~--------- 411 (1207)
T d1u6gc_ 373 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSW--------------------------------LCD--------- 411 (1207)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-----------------------------------------------
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhh--------------------------------hhc---------
Confidence 999999999999999999999998887654321000 000
Q ss_pred CCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCH-HHHHHHHhccCcHh
Q 000166 527 EASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPAD 605 (1974)
Q Consensus 527 ~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~-Ee~e~~~~~l~~~~ 605 (1974)
+.. . ....++ ..+...+ ..+-..
T Consensus 412 --------------------~~~---~--------------------------------~~~~~~~~~l~~~~-~~i~~~ 435 (1207)
T d1u6gc_ 412 --------------------PDA---M--------------------------------EQGETPLTMLQSQV-PNIVKA 435 (1207)
T ss_dssp -------------------------------------------------------------CCCHHHHHHHHT-THHHHH
T ss_pred --------------------hHH---H--------------------------------HhhcchHHHHHHHh-HHHHHH
Confidence 000 0 000011 1122111 112245
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-CCCccchh
Q 000166 606 TVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKKCVV 683 (1974)
Q Consensus 606 i~~~L~s~~WK~RL~a~E~l~~~v~~~~-~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~-~fs~~~~~ 683 (1974)
+...+.+++++.|..++.-+.+.+.... ........++..+...-+=+.++.++....+..+..++.... ........
T Consensus 436 l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~ 515 (1207)
T d1u6gc_ 436 LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQ 515 (1207)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHT
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6788899999999998888877666532 222333333333322111122344555566677766665321 12223334
Q ss_pred hhccchhhccccc--hhhhHHHHHHHHHHHhhch-------------HhHHHHHHHhhh-hcCChhhHHHHHHHHHHHHH
Q 000166 684 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGP-------------GFIFERLYKIMK-DHKNPKVLSEGILWMVSAVE 747 (1974)
Q Consensus 684 ~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~p-------------~~V~~~l~~~~~-~~KnPKv~ae~l~wl~~ai~ 747 (1974)
.+++.++..+.|. +.+..+..++..++....+ ..++..++..+. ....+.++..++..+..++.
T Consensus 516 ~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~ 595 (1207)
T d1u6gc_ 516 ALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIIC 595 (1207)
T ss_dssp TTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 4555555555553 4556666666666665432 112222333222 24456667777777777766
Q ss_pred HhccCcc-chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcc
Q 000166 748 DFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKK 826 (1974)
Q Consensus 748 eFG~~~l-~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R 826 (1974)
.+|-... .+..++..+... +. |...|..++..++.+......
T Consensus 596 ~~~~~~~~~~~~~l~~l~~~-l~--~~~~r~~a~~~l~~i~~~~~~---------------------------------- 638 (1207)
T d1u6gc_ 596 NLGDNLGSDLPNTLQIFLER-LK--NEITRLTTVKALTLIAGSPLK---------------------------------- 638 (1207)
T ss_dssp HTGGGCCTHHHHHHHHHHHH-TT--SSSHHHHHHHHHHHHTTCSSC----------------------------------
T ss_pred HhhhhhHHHHHHHHHHHHHH-hc--chhhHHHHHHHHHHHHHhccc----------------------------------
Confidence 6664321 234444444333 33 233455555444333210000
Q ss_pred ccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc
Q 000166 827 TVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD 906 (1974)
Q Consensus 827 ~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~D 906 (1974)
.+. ..+...+-+.+...+.+.+|..|..+++.+..++......+.+..+..++..|...+.|
T Consensus 639 ---------------~~~---~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~ 700 (1207)
T d1u6gc_ 639 ---------------IDL---RPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISE 700 (1207)
T ss_dssp ---------------CCC---HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCT
T ss_pred ---------------hhH---HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhcccccc
Confidence 000 01122233456667889999999999999999998655555555445677778888899
Q ss_pred hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc---cch-hhhHHHHHHHhc
Q 000166 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV---HLD-KMVPYVTTALTD 982 (1974)
Q Consensus 907 sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~---gl~-~~~~~i~~~L~~ 982 (1974)
++..+...++.+++.++...+.....+...+++.++..+.+.- +...+..++...+..+ +.. ...+.+...|..
T Consensus 701 ~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l--~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~ 778 (1207)
T d1u6gc_ 701 SDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPL--LQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTG 778 (1207)
T ss_dssp TCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHST
T ss_pred ccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCch--hhhhhHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 9999999999999999999888888888899999988876532 2223333333332221 111 112233333321
Q ss_pred c---cCCcchHHHHHHHHHHHhccCCC--CcchhhhhhhHhhhc-c-CCChHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000166 983 A---KLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAM-T-DKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1974)
Q Consensus 983 ~---~~~p~~R~e~l~wL~~~l~~~~~--~~~~~~~~~p~~~~L-~-Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1974)
. ..+...+.+.+..+.+++..... .......+.+++..+ . +.+..+|..|-.+|+.+..+.|....
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~~------- 851 (1207)
T d1u6gc_ 779 PVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQ------- 851 (1207)
T ss_dssp TTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSC-------
T ss_pred hhccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccch-------
Confidence 0 01122233333333333322110 111222223322222 1 12223333333333333222211000
Q ss_pred CchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccC
Q 000166 1056 QGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVK 1135 (1974)
Q Consensus 1056 k~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1135 (1974)
T Consensus 852 -------------------------------------------------------------------------------- 851 (1207)
T d1u6gc_ 852 -------------------------------------------------------------------------------- 851 (1207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHH
Q 000166 1136 DSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRW 1215 (1974)
Q Consensus 1136 ~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~i~~lDlllkw 1215 (1974)
.++. .-+...+.+.+..-+.+|...|......+.... +..+++-
T Consensus 852 ----------------------~~l~-----------~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~---lp~il~~ 895 (1207)
T d1u6gc_ 852 ----------------------LELK-----------SVILEAFSSPSEEVKSAASYALGSISVGNLPEY---LPFVLQE 895 (1207)
T ss_dssp ----------------------THHH-----------HHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHH---HHHHHHH
T ss_pred ----------------------HHHH-----------HHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHHH---hHHHHHH
Confidence 0000 001111112222222222222211111111111 1111111
Q ss_pred HHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchHHH
Q 000166 1216 FVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPY 1295 (1974)
Q Consensus 1216 ~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf~~ 1295 (1974)
.++.+..-.- ++..+.+.+...+.......+..+++.|+..+.+..+.+|..+-+++-.++.++| ..++|.
T Consensus 896 -----l~~~~~~~~~---ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~-~~~lp~ 966 (1207)
T d1u6gc_ 896 -----ITSQPKRQYL---LLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETLLPR 966 (1207)
T ss_dssp -----HHSCGGGHHH---HHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGTHHH
T ss_pred -----HhcCchHHHH---HHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCH-HHHHHH
Confidence 1111110000 1122222233333333344566778888888888999999999999999998887 568999
Q ss_pred HHhhhccCChhhHhHHHHHHHHHHHhhcCccccccch-HHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHH
Q 000166 1296 ILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369 (1974)
Q Consensus 1296 l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~~Ka-l~~iA~~i~drD~~VR~AALn~l~~~Y~~~Gd~v~k~ 1369 (1974)
|.+.+++.|+.+|..++.-+.+++...|-.+..-.+. ++.+-..++|.|..||.+|+.+|.++-..-++-|.-+
T Consensus 967 L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~ 1041 (1207)
T d1u6gc_ 967 LKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDL 1041 (1207)
T ss_dssp HTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 9999999999999999999999988777543211233 3555678899999999999999998865555444444
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.4e-17 Score=210.43 Aligned_cols=555 Identities=18% Similarity=0.186 Sum_probs=359.5
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCC-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhh
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~ 366 (1974)
+-|.+.|++.+...|..++..|-.++..- .+. .-.+|+..|...+.|..- |...+++.++.++.-++. ..|+..
T Consensus 13 ~~l~~~l~~~~~~~R~~a~~~l~~ia~~l--g~~~~~~~lip~l~~~~~~~~e-v~~~~~~~l~~~~~~~~~--~~~~~~ 87 (588)
T d1b3ua_ 13 AVLIDELRNEDVQLRLNSIKKLSTIALAL--GVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHHS--CHHHHHHTHHHHHHHTCCCCHH-HHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHh--CcHhhHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHHHcCC--hhHHHH
Confidence 35788999999999999999987765311 110 135788899998886553 444444555555443332 246888
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHH---HHH-HHhhcCCchhHHHHHHHHHHHHhhCChhHHhHh
Q 000166 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE---DVK-TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1974)
Q Consensus 367 ~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e---~i~-~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~ 442 (1974)
++|++..-+.+.-+.||+++.++|..+... .+.+++.+ .+. ...++.....|..+...+..++........
T Consensus 88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~--~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~--- 162 (588)
T d1b3ua_ 88 LLPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK--- 162 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH---
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH---
Confidence 899888888999999999999999999875 45444332 233 334566678888888888877766554333
Q ss_pred hhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCC
Q 000166 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (1974)
Q Consensus 443 ~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1974)
..+.+.+.+++.|.++.||.+++.+++.+.+.+|.+...+.+- .-+.+.+... .
T Consensus 163 -~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~-------~~l~~l~~d~---------~--------- 216 (588)
T d1b3ua_ 163 -AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEII-------PMFSNLASDE---------Q--------- 216 (588)
T ss_dssp -HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHH-------HHHHHHHTCS---------C---------
T ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHH-------HHHHHHhcCC---------c---------
Confidence 5678889999999999999999999999999888654433221 0122222110 0
Q ss_pred CCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccC
Q 000166 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (1974)
Q Consensus 523 ~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~ 602 (1974)
..++..+....+ .- ....+.++... .+
T Consensus 217 ---------~~vr~~a~~~l~-----------------------------~i-----------~~~~~~~~~~~----~i 243 (588)
T d1b3ua_ 217 ---------DSVRLLAVEACV-----------------------------NI-----------AQLLPQEDLEA----LV 243 (588)
T ss_dssp ---------HHHHTTHHHHHH-----------------------------HH-----------HHHSCHHHHHH----HT
T ss_pred ---------hhhHHHHHHHHH-----------------------------Hh-----------hccCCHHHHHH----HH
Confidence 001000000000 00 00012222222 23
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch
Q 000166 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (1974)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~ 682 (1974)
-+-+...+.+.+|..|..+++.+.+......... ..+.++..+.. ..+|++..|
T Consensus 244 ~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~--ll~d~~~~v----------------------- 297 (588)
T d1b3ua_ 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI-TKTDLVPAFQN--LMKDCEAEV----------------------- 297 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH-HHHTHHHHHHH--HHTCSSHHH-----------------------
T ss_pred HHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhh-hhhhhhHHHHH--HHhccchHH-----------------------
Confidence 3455566777888888877777765554432211 11112222211 233444444
Q ss_pred hhhccchhhccccchhhhHHHHHHHHHHHhhch--------HhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCcc
Q 000166 683 VLCLLGISERVADIKTRAHAMKCLTTFSEAVGP--------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL 754 (1974)
Q Consensus 683 ~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p--------~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l 754 (1974)
|..+...|..+++..+. +.++..+... ....+++|+..+..++.....-+|-. .
T Consensus 298 ----------------r~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~-~~d~~~~vr~~~~~~l~~~~~~~~~~-~ 359 (588)
T d1b3ua_ 298 ----------------RAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKD-N 359 (588)
T ss_dssp ----------------HHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHH-H
T ss_pred ----------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh-hcCCChHHHHHHHHHHhhhhhccchh-H
Confidence 44444444444443322 1233333333 46788888888877777776666643 2
Q ss_pred chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCc
Q 000166 755 KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (1974)
Q Consensus 755 ~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~ 834 (1974)
....++..+... +.+.++.||..++..++.+...+|..-
T Consensus 360 ~~~~l~p~l~~~-l~d~~~~v~~~~~~~l~~~~~~~~~~~---------------------------------------- 398 (588)
T d1b3ua_ 360 TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ---------------------------------------- 398 (588)
T ss_dssp HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH----------------------------------------
T ss_pred HHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHhhcchhh----------------------------------------
Confidence 234566666666 888888999888888777666555320
Q ss_pred CCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHH
Q 000166 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914 (1974)
Q Consensus 835 ~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~ 914 (1974)
++..|-+.+..-++|.+|++|..+++.+..++..-+... ....+...+-..+.|.+..|...
T Consensus 399 ---------------~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~D~~~~VR~~ 460 (588)
T d1b3ua_ 399 ---------------LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp ---------------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHHH
T ss_pred ---------------hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh---HHHHHHHHHHhhccCCchhHHHH
Confidence 011122345566788999999999999999886422111 11346666677789999999999
Q ss_pred HHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchh----hhHHHHHHHhcccCCcchH
Q 000166 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----MVPYVTTALTDAKLGAEGR 990 (1974)
Q Consensus 915 al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~----~~~~i~~~L~~~~~~p~~R 990 (1974)
|+.+++.++..+|+.+. ...++|.+...+.|++..+|.+++.|+..+...++.+. ++|.+...+.++ .|+.|
T Consensus 461 A~~~L~~l~~~~~~~~~--~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~--v~nVR 536 (588)
T d1b3ua_ 461 ATSNLKKLVEKFGKEWA--HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANVR 536 (588)
T ss_dssp HHHHHHHHHHHHCHHHH--HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHHH
T ss_pred HHHHHHHHHHHhCcHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCC--CHHHH
Confidence 99999999999998653 45688999999999999999999999999999887644 455555655555 48899
Q ss_pred HHHHHHHHHHhccCCCCcchhhhhhhHhhh-ccCCChHHHHHHHHHHHHH
Q 000166 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 991 ~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~-L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
..++..|.+-...... ......+.|++.. ++|.+.|||..|+++|..+
T Consensus 537 ~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 537 FNVAKSLQKIGPILDN-STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCc-HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9988888866554432 3455667786655 5899999999999998764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.3e-14 Score=182.80 Aligned_cols=366 Identities=15% Similarity=0.163 Sum_probs=233.4
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCc-----c
Q 000166 606 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK-----K 680 (1974)
Q Consensus 606 i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~-----~ 680 (1974)
+++.|.|.|...|+.++..+.......+.. ...+-|+-+|..- ..|.. .|+.. +++..+.|.. .
T Consensus 15 l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~-~~~~~lip~l~~~--~~~~~-ev~~~-------~~~~l~~~~~~~~~~~ 83 (588)
T d1b3ua_ 15 LIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRSELLPFLTDT--IYDED-EVLLA-------LAEQLGTFTTLVGGPE 83 (588)
T ss_dssp HHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHHTHHHHHHHT--CCCCH-HHHHH-------HHHHHTTCSGGGTSGG
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCcH-hhHHHHHHHHHHH--hcCcH-HHHHH-------HHHHHHHHHHHcCChh
Confidence 578999999999999999997665543221 1123344444432 23332 23333 3333344422 2
Q ss_pred chhhhccchhhcc-c--cchhhhHHHHHHHHHHHhhchHhHHHHHHH---hhhhcCChhhHHHHHHHHHHHHHHhccCcc
Q 000166 681 CVVLCLLGISERV-A--DIKTRAHAMKCLTTFSEAVGPGFIFERLYK---IMKDHKNPKVLSEGILWMVSAVEDFGVSHL 754 (1974)
Q Consensus 681 ~~~~~l~~lveKl-g--D~K~r~~a~e~L~~~aE~~~p~~V~~~l~~---~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l 754 (1974)
.+..+++.+ +.+ . |..+|..|.++|..+++..++..+-..+++ .+.+......+..++.-+..++..++..
T Consensus 84 ~~~~ll~~l-~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~-- 160 (588)
T d1b3ua_ 84 YVHCLLPPL-ESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA-- 160 (588)
T ss_dssp GGGGGHHHH-HHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--
T ss_pred HHHHHHHHH-HHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHH--
Confidence 333333332 222 2 346899999999999998888776554443 4445666677777776666665544432
Q ss_pred chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCc
Q 000166 755 KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (1974)
Q Consensus 755 ~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~ 834 (1974)
....++..+... +++.||.||.+|...++.+-.+++....
T Consensus 161 ~~~~l~~~~~~l-~~D~~~~VR~~a~~~l~~~~~~~~~~~~--------------------------------------- 200 (588)
T d1b3ua_ 161 VKAELRQYFRNL-CSDDTPMVRRAAASKLGEFAKVLELDNV--------------------------------------- 200 (588)
T ss_dssp HHHHHHHHHHHH-HTCSCHHHHHHHHHHHHHHHHTSCHHHH---------------------------------------
T ss_pred HHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHhcHHHH---------------------------------------
Confidence 235677778888 8999999999999999988776653211
Q ss_pred CCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHHHHhhhccchhHhHHH
Q 000166 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVM 913 (1974)
Q Consensus 835 ~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~aLk~Rl~DsNk~lv~ 913 (1974)
.+.|.+-+..-+.|.+|.+|..|++.+..|+... .+.. ...++..++.-+.|.+..|..
T Consensus 201 ----------------~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~----~~~~~~~~i~~~l~~~~~D~~~~Vr~ 260 (588)
T d1b3ua_ 201 ----------------KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL----PQEDLEALVMPTLRQAAEDKSWRVRY 260 (588)
T ss_dssp ----------------HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS----CHHHHHHHTHHHHHHHHTCSSHHHHH
T ss_pred ----------------HHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccC----CHHHHHHHHHHHHHHhcccccHHHHH
Confidence 0113334555578999999999999999998531 1111 234677788888999999999
Q ss_pred HHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch--------hhhHHHHHHHhcccC
Q 000166 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD--------KMVPYVTTALTDAKL 985 (1974)
Q Consensus 914 ~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~--------~~~~~i~~~L~~~~~ 985 (1974)
.++++++.++..+|+.... ..++|.+...+.|..+.||.++..++..++..++.+ .+++.+...+.+.
T Consensus 261 ~~~~~l~~l~~~~~~~~~~--~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~-- 336 (588)
T d1b3ua_ 261 MVADKFTELQKAVGPEITK--TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA-- 336 (588)
T ss_dssp HHHHTHHHHHHHHCHHHHH--HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--
T ss_pred HHHHhHHHHHHHhhhhhhh--hhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCC--
Confidence 9999999999999987543 467899999999999999999999999998877643 2233333333322
Q ss_pred CcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHH
Q 000166 986 GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIE 1049 (1974)
Q Consensus 986 ~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~ 1049 (1974)
++..|..+...+...............+++.+..+|.|.+.+||..+...++.+...+|.+.+.
T Consensus 337 ~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~ 400 (588)
T d1b3ua_ 337 NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS 400 (588)
T ss_dssp CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHH
T ss_pred ChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhh
Confidence 4555665544433222111111112223333555566777777776666666666655554443
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7.4e-13 Score=175.55 Aligned_cols=722 Identities=15% Similarity=0.144 Sum_probs=407.1
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHcCh----h-hhhhhhHHHHHHHhhhhc-CChhhHHHHHHHHHHHHhhc------hh
Q 000166 59 KTVADSNAPVQDKALDALIAYLKAADA----D-AGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELE------AV 126 (1974)
Q Consensus 59 k~v~DsN~~aqEk~leal~~~l~~a~~----~-~~~~~~~v~~~lveK~L~-~r~ktk~~a~e~~l~~vE~e------~~ 126 (1974)
..+.+.|..+++.++.++..+++.... . ..+....+++.++. ++. .-+..+..|..|+-.++... ..
T Consensus 133 ~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~-~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 211 (888)
T d1qbkb_ 133 SLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ-FFKHSSPKIRSHAVACVNQFIISRTQALMLHI 211 (888)
T ss_dssp TSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHT-GGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHH-HhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345566777778888877666543211 0 11123345666654 343 45667777888877666531 12
Q ss_pred hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC-hhHHHhhchhhhcCCChhHHHHHHHHHHHHHHh-hCCchh
Q 000166 127 DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPV 204 (1974)
Q Consensus 127 ~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~-~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrw-lG~~~l 204 (1974)
+.+++.+.......+|.|...++.++..++..+.-+..+ +..|++.+-..+.+.|..||-+|..+...+..- .....+
T Consensus 212 ~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~ 291 (888)
T d1qbkb_ 212 DSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 291 (888)
T ss_dssp HHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 445666677778889999999999888887777665443 455677776778889999998887664332210 000111
Q ss_pred hHHHhhhchHHHHHHHHHHHHhcCCCCCCcc-hhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCC------
Q 000166 205 KTILFEKMRDTMKKELEVELVNVSGTARPTR-KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVD------ 277 (1974)
Q Consensus 205 k~~L~~~Lkp~q~keLe~efek~~~~~~P~R-~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~------ 277 (1974)
.+++ ..+=|..+ ....... .....+. ... . .....+..+++.|+-...
T Consensus 292 ~~~l-~~l~~~l~-----------~~~~~~~~~~~~~~~---------~~~-~---~~~~~~~~~~i~~~~~~~~~~~~~ 346 (888)
T d1qbkb_ 292 VRHL-PKLIPVLV-----------NGMKYSDIDIILLKG---------DVE-E---DETIPDSEQDIRPRFHRSRTVAQQ 346 (888)
T ss_dssp TTST-TTTTTTTT-----------TSSCCSSTTHHHHTT---------TSS-C---CTTSCCCGGGCCCCCCCCCCCCCC
T ss_pred HHHH-HHHHHHHH-----------HHhhcchHHHHHHhh---------hhh-h---hhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1111 11111100 0000000 0000000 000 0 000000111111110000
Q ss_pred -cccccCCCCc--hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 000166 278 -PVDILTPLEK--SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR 354 (1974)
Q Consensus 278 -pvdIl~klpk--~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~ 354 (1974)
..+.+..... .++.+......|.-|+.+...|..+.... ...-+..++..+...+.+.|-.+-..|+-+++.++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~--~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~e 424 (888)
T d1qbkb_ 347 HDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY--RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 424 (888)
T ss_dssp CTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTC--CSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhh--HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhh
Confidence 0001111110 11222334467989998887665554321 112256688888889999999999999999999999
Q ss_pred HhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC
Q 000166 355 GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1974)
Q Consensus 355 gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~ 434 (1974)
|....+.+|...++|.++..+.|.++.||.++..||-.++.+ +. ..
T Consensus 425 g~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~------------------------------~~----~~ 470 (888)
T d1qbkb_ 425 GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW------------------------------VV----SQ 470 (888)
T ss_dssp TSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHH------------------------------HH----SS
T ss_pred hHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHH------------------------------hh----hh
Confidence 999889999999999999999999999998765555443321 10 00
Q ss_pred ChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCc
Q 000166 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSA 514 (1974)
Q Consensus 435 ~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~ 514 (1974)
. ....+..+++.+++.+.|+++.||.+|+.+|..+....|+. +.++++.+- ..+..++...
T Consensus 471 ~---~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~-l~p~~~~il----~~l~~~l~~~----------- 531 (888)
T d1qbkb_ 471 P---PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAYIL----DTLVFAFSKY----------- 531 (888)
T ss_dssp C---HHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTS-SGGGHHHHH----HHHHHHTTTC-----------
T ss_pred h---hhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHH----HHHHHHHhhh-----------
Confidence 0 01234677889999999999999999999999998887753 444443221 1111111110
Q ss_pred cccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHH
Q 000166 515 RVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEI 594 (1974)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~ 594 (1974)
T Consensus 532 -------------------------------------------------------------------------------- 531 (888)
T d1qbkb_ 532 -------------------------------------------------------------------------------- 531 (888)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc-CCCccchHHHHHHHHHHHHHHHHh
Q 000166 595 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAAT 673 (1974)
Q Consensus 595 e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~-PgwkesNfqV~~k~leil~~la~~ 673 (1974)
.+++....++++..+.+.+...-......+.++..+... -...++.. .....++.+..++..
T Consensus 532 ----------------~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~ 594 (888)
T d1qbkb_ 532 ----------------QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATA 594 (888)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHH
Confidence 000011112222222222111000001122222222111 01111111 122334555544432
Q ss_pred cCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCc
Q 000166 674 ATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 753 (1974)
Q Consensus 674 ~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~ 753 (1974)
.+.-... .... ....++..+.+.. ...+...........-....+..++..++.+++.+|...
T Consensus 595 ~~~~~~~----~~~~------------~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~ 657 (888)
T d1qbkb_ 595 LQSGFLP----YCEP------------VYQRCVNLVQKTL-AQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI 657 (888)
T ss_dssp STTTTHH----HHHH------------HHHHHHHHHHHHH-HHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHhh----hHHH------------HHHHHHHHHHHHH-HHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 2111000 0011 1111111111111 111111111111223344556677788888888888653
Q ss_pred cch---HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 000166 754 LKL---KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (1974)
Q Consensus 754 l~~---K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~ 830 (1974)
.++ ..++..+..+ +++.++.||.+|..++|.+..+.|+.+.+|++++=|.
T Consensus 658 ~~~~~~~~l~~~l~~~-l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~-------------------------- 710 (888)
T d1qbkb_ 658 EQLVARSNILTLMYQC-MQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPI-------------------------- 710 (888)
T ss_dssp HHHHHTSCHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHH--------------------------
T ss_pred hhhhhHhhHHHHHHHH-hCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------------------
Confidence 222 2355556665 9999999999999999999999999998887654332
Q ss_pred ccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc--chh
Q 000166 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSN 908 (1974)
Q Consensus 831 ~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~--DsN 908 (1974)
+++.+.+..+-+|..|+..+..|....+.-++|-. ..++..|-..+. +.+
T Consensus 711 ---------------------------l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~ 762 (888)
T d1qbkb_ 711 ---------------------------LGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTP 762 (888)
T ss_dssp ---------------------------HHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCC
T ss_pred ---------------------------HHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCcc
Confidence 34445556677899999999999876667788865 889999999995 456
Q ss_pred HhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhH-HHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCc
Q 000166 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM-RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGA 987 (1974)
Q Consensus 909 k~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~v-R~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p 987 (1974)
++|...++.++|+|+...+..+.+|...++++++..|.+.+..- ++.+..++-..+.. ||
T Consensus 763 ~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~-------------------~p 823 (888)
T d1qbkb_ 763 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV-------------------NP 823 (888)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHH-------------------CG
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH-------------------Cc
Confidence 77999999999999999998899999999999998887644321 22222222222111 12
Q ss_pred chHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHH
Q 000166 988 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILER 1066 (1974)
Q Consensus 988 ~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~ 1066 (1974)
.+ ++ +.+..++. +++...+-.++++.....+|..+-..+|.+.....+..|.|..+.++.+.
T Consensus 824 ~~---~~-------------~~l~~~~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~ 885 (888)
T d1qbkb_ 824 SG---VI-------------QDFIFFCD-AVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 885 (888)
T ss_dssp GG---TG-------------GGHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HH---HH-------------HHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHcCCHHHHHHHHHh
Confidence 10 00 11111222 22233445689999999999999999999988899999998887776654
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=9.9e-09 Score=131.83 Aligned_cols=535 Identities=14% Similarity=0.134 Sum_probs=332.5
Q ss_pred hHHHHHHHHHHHHhhhcC-CCCCCChhHHHHHHH----HHhc-chhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000166 299 WSERKDAVAELTKLASTK-RIAPGDFTEVCRTLK----KLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1974)
Q Consensus 299 WkeRkEALe~L~~L~~~p-Ki~~~dy~dL~~~Lk----k~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~ 370 (1974)
+..|.-+|..|..++..- ......+..+...|. .... |.|..|...|++|+..+...+...|..+ ...+++.
T Consensus 149 ~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 228 (861)
T d2bpta1 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV 228 (861)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHh
Confidence 445555666665554321 111122233323222 2233 8888999999999999999888777654 4667888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh----hHHHH-HHHhhcCCchhHHHHHHHHHHHHhhC----------C
Q 000166 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD----VVEDV-KTSVKNKVPLVRSLTLNWVTFCIETS----------S 435 (1974)
Q Consensus 371 lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~----~~e~i-~~al~~KnP~vk~etl~~L~r~l~~~----------~ 435 (1974)
+.+.+++....++.++.++|..++......+.. ++..+ ....++.++.+|..++.|+....... .
T Consensus 229 l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~ 308 (861)
T d2bpta1 229 VCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFP 308 (861)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999999998762222333 33333 35667999999999999887553211 0
Q ss_pred ------hhHHhHhhhhhHHHHHhhh-------CCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhc
Q 000166 436 ------KAAVLKVHKDYVPICMECL-------NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1974)
Q Consensus 436 ------~~~~~~~~k~~~~~l~k~l-------~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~ 502 (1974)
.......+..++|.+...+ +|.+..+|.++..++..+...+|...+..+.. .+...+..
T Consensus 309 ~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~ 380 (861)
T d2bpta1 309 QSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLE--------FVEQNITA 380 (861)
T ss_dssp TCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHH--------HHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcc--------hhhhhhhh
Confidence 0111233456777777776 34556799999999999999999765543322 22222211
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCC
Q 000166 503 SGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPE 582 (1974)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~ 582 (1974)
. . ...+..+....+..
T Consensus 381 ~---------~------------------~~~~~~a~~~l~~i------------------------------------- 396 (861)
T d2bpta1 381 D---------N------------------WRNREAAVMAFGSI------------------------------------- 396 (861)
T ss_dssp S---------S------------------HHHHHHHHHHHHHT-------------------------------------
T ss_pred H---------H------------------HHHHHHHHHHHHHH-------------------------------------
Confidence 0 0 00000000000000
Q ss_pred CCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc---hhHHHHHHHHHhcCCCccchHHH
Q 000166 583 DVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD---QSVEILVRLVCMLPGWSEKNVQV 659 (1974)
Q Consensus 583 ~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~---~~~~~Lvr~l~~~PgwkesNfqV 659 (1974)
....+.+.....+..++ +.++..+.+.++..|-.++..+....+...... .....++..+.. ..+.|..+
T Consensus 397 ---~~~~~~~~~~~~l~~~l-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~---~~~~~~~~ 469 (861)
T d2bpta1 397 ---MDGPDKVQRTYYVHQAL-PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLI---GLQDHPKV 469 (861)
T ss_dssp ---SSSSCHHHHHHHHHHHH-HHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHH---HHTSCHHH
T ss_pred ---HhhcchhhHHHHHHHHH-HHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHh---ccccChHH
Confidence 00012233333332222 456788999999999999888876666533221 223444444432 13445567
Q ss_pred HHHHHHHHHHHHHhcCCCCccchh----hhccchhh----ccccchhhhHHHHHHHHHHHhhchHh------HHHHHHHh
Q 000166 660 QQQVIEVINYLAATATKFPKKCVV----LCLLGISE----RVADIKTRAHAMKCLTTFSEAVGPGF------IFERLYKI 725 (1974)
Q Consensus 660 ~~k~leil~~la~~~~~fs~~~~~----~~l~~lve----KlgD~K~r~~a~e~L~~~aE~~~p~~------V~~~l~~~ 725 (1974)
.......+..+............. .++..++. .-.+..++..+.+++..+++..+..+ +...+...
T Consensus 470 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~ 549 (861)
T d2bpta1 470 ATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDK 549 (861)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 776666666666554433222222 22222222 12334678888888888887665432 12222221
Q ss_pred hhh----cC----------ChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcC-CCccHHHHHHHHHHHHHHHhh
Q 000166 726 MKD----HK----------NPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGL-QSSAAATRNATIKLLGALHKF 789 (1974)
Q Consensus 726 ~~~----~K----------nPKv~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L-~~sN~~VR~aAi~Ll~~ly~~ 789 (1974)
+.. .. ...++..++..+...++.++-...+ ...++..+-.. + ...+..||..+..+++.+-..
T Consensus 550 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~v~~~~l~~l~~l~~~ 628 (861)
T d2bpta1 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRL-LEKKDSAFIEDDVFYAISALAAS 628 (861)
T ss_dssp HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHH-HHSTTGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhh-cccCCchhHHHHHHHHHHHHHHH
Confidence 111 01 1234566677777777777754333 24566665554 4 345567999999999999999
Q ss_pred hCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHH
Q 000166 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV 869 (1974)
Q Consensus 790 ~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~ 869 (1974)
+|+.+.+|++.+-|.+ +..+.+.++.+
T Consensus 629 ~~~~~~~~l~~i~p~l-----------------------------------------------------~~~l~~~~~~v 655 (861)
T d2bpta1 629 LGKGFEKYLETFSPYL-----------------------------------------------------LKALNQVDSPV 655 (861)
T ss_dssp HGGGGHHHHHHHHHHH-----------------------------------------------------HHHHHCTTSHH
T ss_pred hhHHHHHHHHHHhhHH-----------------------------------------------------HHHhCCCCHHH
Confidence 9999888876554444 33444556788
Q ss_pred HHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccch--hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhcc
Q 000166 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947 (1974)
Q Consensus 870 RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~Ds--Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D 947 (1974)
|..|+..+..|...-...+.|.. .+++..|-.++.+. +..+...++++++.|+.++|..|.+|.-.+++.+.+.+..
T Consensus 656 ~~~a~~~l~~i~~~~~~~~~~~~-~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~ 734 (861)
T d2bpta1 656 SITAVGFIADISNSLEEDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNT 734 (861)
T ss_dssp HHHHHHHHHHHHHHTGGGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhHHHhHhhH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999998865445566654 78888998888654 5677889999999999999999999999999988888776
Q ss_pred Cch-----------hHHHHHHHHHHHHHHhc
Q 000166 948 NKK-----------HMRECTLTVLDAWLAAV 967 (1974)
Q Consensus 948 ~K~-----------~vR~aa~~alda~~~~~ 967 (1974)
+-. .||++++.++..++...
T Consensus 735 ~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 765 (861)
T d2bpta1 735 KPENGTLEALDYQIKVLEAVLDAYVGIVAGL 765 (861)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 543 47888888887776543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=7.9e-09 Score=132.76 Aligned_cols=608 Identities=10% Similarity=0.103 Sum_probs=357.3
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccch--
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS-- 364 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y~-- 364 (1974)
..+...+.+..=+.|.-+-+.+..++..- +..+.+-+|+..|-..+. +.+..+...|+.|++.++..++..+..+.
T Consensus 98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~-~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~ 176 (861)
T d2bpta1 98 TNALTALVSIEPRIANAAAQLIAAIADIE-LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS 176 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHH-GGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHh-CCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555566666667776666555554310 112357799999999987 56677788899999999999988766554
Q ss_pred -hhhHHHHHHHh--ccCCHHHHHHHHHHHHHHHHhcCCC-------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC
Q 000166 365 -RFLLPVLLEKL--KEKKPTVAESLTQTLQAMHKAGCLN-------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1974)
Q Consensus 365 -~~~l~~lLekl--KEKK~~V~eA~~~aLda~~~~~~~~-------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~ 434 (1974)
..+++.++..+ .+....|+.++..|+..++.+ +.+ ...+++-+..++++.++.+|..++..+...+...
T Consensus 177 ~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~ 255 (861)
T d2bpta1 177 SNNILIAIVQGAQSTETSKAVRLAALNALADSLIF-IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255 (861)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG-CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH-HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 44566666655 456678999998998887764 111 1234566678889999999999999998888765
Q ss_pred ChhHHhHhhhh-hHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCC-------HHHHHHHHHHHhcCCCC
Q 000166 435 SKAAVLKVHKD-YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD-------DVRRNKLSEMIAGSGGD 506 (1974)
Q Consensus 435 ~~~~~~~~~k~-~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld-------~~kk~KI~e~~~~~~~~ 506 (1974)
+... .+.+.. +...+.....+.+++||..+.+.+..+....... ......+. ...+..+.+.+..
T Consensus 256 ~~~~-~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~i~~~---- 328 (861)
T d2bpta1 256 YTFM-KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI--AYELAQFPQSPLQSYNFALSSIKDVVPN---- 328 (861)
T ss_dssp GGGC-HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHH--HHHHHHCTTCSCCCCCHHHHHHHHHHHH----
T ss_pred HHHH-HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHHH----
Confidence 4322 222233 3344567788999999999999888776442210 00000000 0000001110000
Q ss_pred CCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 000166 507 VATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP 586 (1974)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~ 586 (1974)
-.... . ...++...
T Consensus 329 ------------------------------l~~~l---~---------------------------------~~~~~~~~ 342 (861)
T d2bpta1 329 ------------------------------LLNLL---T---------------------------------RQNEDPED 342 (861)
T ss_dssp ------------------------------HHHHT---T---------------------------------CCCCC-CC
T ss_pred ------------------------------HHHHH---H---------------------------------Hhhccccc
Confidence 00000 0 00000001
Q ss_pred CCCCHH----HHHHHHhccCc--------HhHHHhhhhccHHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHhcCCC
Q 000166 587 SEMSLE----EIESRLGSLIP--------ADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LDQSVEILVRLVCMLPGW 652 (1974)
Q Consensus 587 ~~~s~E----e~e~~~~~l~~--------~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~--~~~~~~~Lvr~l~~~Pgw 652 (1974)
...+.. .+-..+...++ +.+...+.+.+|+.|.+++..+....+.... .....+-++..+. ...
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~--~~l 420 (861)
T d2bpta1 343 DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL--NLM 420 (861)
T ss_dssp CCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH--HGG
T ss_pred hhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH--HHh
Confidence 111111 11111111111 2344677899999999999888755543211 1111122222222 124
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCCh
Q 000166 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP 732 (1974)
Q Consensus 653 kesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnP 732 (1974)
.|.|..|....+..+..+++..+..... . ....-++..+... ..-+|
T Consensus 421 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~------------------~-------------~~~~~ll~~l~~~--~~~~~ 467 (861)
T d2bpta1 421 NDQSLQVKETTAWCIGRIADSVAESIDP------------------Q-------------QHLPGVVQACLIG--LQDHP 467 (861)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHGGGSCT------------------T-------------TTHHHHHHHHHHH--HTSCH
T ss_pred cCcchhhhhHHHHHHHHHHHHhchhhhh------------------H-------------HhhhhhhHHHHhc--cccCh
Confidence 5555666555555555544421110000 0 0011122222222 24467
Q ss_pred hhHHHHHHHHHHHHHHhccCccc-----hHhHHHHH-hhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHH
Q 000166 733 KVLSEGILWMVSAVEDFGVSHLK-----LKDLIDFC-KDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALL 806 (1974)
Q Consensus 733 Kv~ae~l~wl~~ai~eFG~~~l~-----~K~lI~~~-k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall 806 (1974)
+++..++.-+...+..++-.... ...++..+ ....-...+..+|..+...++.+-...++.+..++..+-+...
T Consensus 468 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~ 547 (861)
T d2bpta1 468 KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVM 547 (861)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 77777776666666655433221 12223322 2221345677899999999999999999999998888777777
Q ss_pred HHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHccc
Q 000166 807 SALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANK 886 (1974)
Q Consensus 807 ~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ank 886 (1974)
..+..-+..... .+... .....|..+...+..+..+++....
T Consensus 548 ~~l~~~~~~~~~----------------------------------~~~~~----~~~~~~~l~~~~~~~l~~~~~~~~~ 589 (861)
T d2bpta1 548 DKLGQTMSVDEN----------------------------------QLTLE----DAQSLQELQSNILTVLAAVIRKSPS 589 (861)
T ss_dssp HHHHHHTTSCGG----------------------------------GCCHH----HHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhh----------------------------------hhhhh----HHhHHHHHHHHHHHHHHHHHhcchh
Confidence 666554332200 00100 0112355677777788888876555
Q ss_pred CCCCCCccchHHHHhhhccchh-HhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH
Q 000166 887 RIQPAGTGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA 965 (1974)
Q Consensus 887 rI~p~~~geL~~aLk~Rl~DsN-k~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~ 965 (1974)
.+.|-. .+++..+-..+.+.+ ..+...++.+++.++.++|..|.+|...++|.++..|.|....||..+..++..+..
T Consensus 590 ~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~ 668 (861)
T d2bpta1 590 SVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp GTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 555543 678888877775444 456678999999999999999999999999999999999999999999999999888
Q ss_pred hccc------hhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC--cchhhhhhhHhhhccCCC-----------h
Q 000166 966 AVHL------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKS-----------S 1026 (1974)
Q Consensus 966 ~~gl------~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~--~~~~~~~~p~~~~L~Dr~-----------~ 1026 (1974)
.+|- +.+++.+...|.+++.++..|..++.-|..-....... +-+..++..+...+.... .
T Consensus 669 ~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 748 (861)
T d2bpta1 669 SLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQI 748 (861)
T ss_dssp HTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHH
T ss_pred HhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHH
Confidence 7762 23444566666666667888988887766554433321 112222222333443322 3
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 000166 1027 DVRKAAEACIVEILRAGG 1044 (1974)
Q Consensus 1027 dVRkaA~~~L~~~m~~~G 1044 (1974)
+||+++-.++..++..++
T Consensus 749 ~l~~~~~~~~~~i~~~~~ 766 (861)
T d2bpta1 749 KVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 477777777777766553
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=4.7e-07 Score=116.55 Aligned_cols=621 Identities=14% Similarity=0.145 Sum_probs=346.9
Q ss_pred CChhHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHhcc-ccccchhhhHHHHHHHhcc--CCHHHHHHHHHHHHHHHH
Q 000166 321 GDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRT-HFSGSSRFLLPVLLEKLKE--KKPTVAESLTQTLQAMHK 395 (1974)
Q Consensus 321 ~dy~dL~~~Lkk~l~--DsNv~vv~~A~~~i~~LA~gLr~-~F~~y~~~~l~~lLeklKE--KK~~V~eA~~~aLda~~~ 395 (1974)
+.+.||+..|...+. |.+..+...++.|+..+++.++. .|..|...+++.++..+.+ -...|+.++..++..+..
T Consensus 124 ~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~ 203 (876)
T d1qgra_ 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred cccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHH
Confidence 345677877777774 67788888899999999998875 5789999999999999864 456788888888776655
Q ss_pred hcCCC-------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHH
Q 000166 396 AGCLN-------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSV 468 (1974)
Q Consensus 396 ~~~~~-------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~ 468 (1974)
+ ... ...+++-+...+++.++.+|..++..|.+.+...+.....-+...+.+.+...+.+...+++..+.+.
T Consensus 204 ~-~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 282 (876)
T d1qgra_ 204 F-TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282 (876)
T ss_dssp G-CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred H-hhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4 111 11345566678889999999999999999888765432222224466778888999999999999887
Q ss_pred HHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCC
Q 000166 469 LAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPV 548 (1974)
Q Consensus 469 l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~ 548 (1974)
+.++....... ... ..+....... ....... ........-.+.-.... ..
T Consensus 283 ~~~i~~~~~~~----~~~---------~~~~~~~~~~--~~~~~~~----------~~~~~~~~l~~~l~~~~-~~---- 332 (876)
T d1qgra_ 283 WSNVCDEEMDL----AIE---------ASEAAEQGRP--PEHTSKF----------YAKGALQYLVPILTQTL-TK---- 332 (876)
T ss_dssp HHHHHHHHHHH----HHH---------HHHHHHHSSC--CSSCCCC----------HHHHHHHHHHHHHHHHT-TC----
T ss_pred HHHHHHHHHHH----HHH---------hhHHHHhhhh--HHHHHHH----------HHHHHHHHHHHhhHHHH-Hh----
Confidence 77654322110 000 0111111000 0000000 00000000000000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCH----HHHHHHHhccCc--------HhHHHhhhhccHH
Q 000166 549 SAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL----EEIESRLGSLIP--------ADTVGQLKSAVWK 616 (1974)
Q Consensus 549 ~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~----Ee~e~~~~~l~~--------~~i~~~L~s~~WK 616 (1974)
.+ ++......+. .++-..+...++ +-+...+.+.+|+
T Consensus 333 -----------------------------~~--~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~ 381 (876)
T d1qgra_ 333 -----------------------------QD--ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 381 (876)
T ss_dssp -----------------------------CC--SSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHH
T ss_pred -----------------------------cc--cccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHH
Confidence 00 0000111121 112222222222 2345778899999
Q ss_pred HHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC--CCccchhhhccchhhc
Q 000166 617 ERLEAISSLRQQVEAVQ--NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK--FPKKCVVLCLLGISER 692 (1974)
Q Consensus 617 ~RL~a~E~l~~~v~~~~--~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~--fs~~~~~~~l~~lveK 692 (1974)
.|-+++..+....+... .......-++..+. +...|.|..|....+..+..+++..+. ........+++.+...
T Consensus 382 ~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~--~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (876)
T d1qgra_ 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI--ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH--HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH--HhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHH
Confidence 99999887765444321 11112222333332 245789999999999999988875432 2334455566667766
Q ss_pred cccc-hhhhHHHHHHHHHHHhhch--------------------HhHHHHHHHhhh--hcCChhhHHHHHHHHHHHHHHh
Q 000166 693 VADI-KTRAHAMKCLTTFSEAVGP--------------------GFIFERLYKIMK--DHKNPKVLSEGILWMVSAVEDF 749 (1974)
Q Consensus 693 lgD~-K~r~~a~e~L~~~aE~~~p--------------------~~V~~~l~~~~~--~~KnPKv~ae~l~wl~~ai~eF 749 (1974)
+.+. +++..+..++..+++.... ..++..++..+. ...++.++.+++.-+...+...
T Consensus 460 l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 539 (876)
T d1qgra_ 460 LSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhh
Confidence 6664 4677777777777764321 122333333321 1234455555555555544333
Q ss_pred ccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCch-------hHhhhhcchHHHHHHHHHHHhcCCCCCCC
Q 000166 750 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD-------IKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1974)
Q Consensus 750 G~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~-------l~~~l~dlkpall~~Ie~EF~K~~~~~~p 822 (1974)
. ...-|.+..-...++..+-..+... .+..+......+...+..-+.+...+..
T Consensus 540 ~------------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~- 600 (876)
T d1qgra_ 540 A------------------KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA- 600 (876)
T ss_dssp C------------------STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred h------------------hHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhh-
Confidence 2 2222333333333333222222111 0111111112222222222222211000
Q ss_pred CCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhc--CCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHH
Q 000166 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL--ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900 (1974)
Q Consensus 823 ~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l--~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aL 900 (1974)
. .+.+.+-+.++.-+ .+.++.+|.+++..+..++..-...+.|-. .++++.|
T Consensus 601 ----------------------~---~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l-~~ii~~l 654 (876)
T d1qgra_ 601 ----------------------L---QISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM-EAFKPFL 654 (876)
T ss_dssp ----------------------H---TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHH
T ss_pred ----------------------h---hhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHH-HHHHHHH
Confidence 0 00111112222222 234677888999999988875555566653 7788888
Q ss_pred hhhccch-hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCc--hhHHHHHHHHHHHHHHhcc--chhhhHH
Q 000166 901 RGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH--LDKMVPY 975 (1974)
Q Consensus 901 k~Rl~Ds-Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K--~~vR~aa~~alda~~~~~g--l~~~~~~ 975 (1974)
-..|.+. +..+...|+.+++.++.++|..+.+|.-.+++.++..|.|.. ..+|.+++.|+..++..+| +.++++.
T Consensus 655 ~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~ 734 (876)
T d1qgra_ 655 GIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEV 734 (876)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence 8888554 466888999999999999999999999999999999998865 5799999999999998887 2344444
Q ss_pred HHHHHhc---ccCCcc----------hHHHHHHHHHHH---hccCCC--Cc---chhhhhhhHhh------hccCCChHH
Q 000166 976 VTTALTD---AKLGAE----------GRKDLFDWLSKQ---LTGLSG--FP---DAAHLLKPASI------AMTDKSSDV 1028 (1974)
Q Consensus 976 i~~~L~~---~~~~p~----------~R~e~l~wL~~~---l~~~~~--~~---~~~~~~~p~~~------~L~Dr~~dV 1028 (1974)
+.+.|.. ....+. +|..++.-...- +..... .. ...+.+.+++. ...+++.+|
T Consensus 735 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 814 (876)
T d1qgra_ 735 VLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGV 814 (876)
T ss_dssp HHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHH
T ss_pred HHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4444431 111111 233333222221 222111 11 22333444332 236889999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHH
Q 000166 1029 RKAAEACIVEILRAGGQETIEK 1050 (1974)
Q Consensus 1029 RkaA~~~L~~~m~~~G~~~~~~ 1050 (1974)
+..|-.+++.++..+|.+....
T Consensus 815 ~~~~~~~i~~l~~~~g~~~~~~ 836 (876)
T d1qgra_ 815 VACAAGLIGDLCTAFGKDVLKL 836 (876)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999866543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.8e-06 Score=109.18 Aligned_cols=662 Identities=14% Similarity=0.139 Sum_probs=348.0
Q ss_pred HHHHHHHHHhhchh----hhHHHHHHHHhhccC--chhHHHHHHHHHHHHHhhCCCcc--ChhHHHhhchhhhcC--CCh
Q 000166 113 AQAVFMLWVELEAV----DVFLDVMEKAIKNKV--AKAVVPAIDVMFQALSEFGAKII--PPKRILKMLPELFDH--QDQ 182 (1974)
Q Consensus 113 a~e~~l~~vE~e~~----~~v~e~ll~~~~~K~--PKvvaaai~~l~~~l~~FG~kvv--~~K~ilk~l~~lf~h--~dk 182 (1974)
+.+++..++..+-+ ..+++.|...+.+.+ +.+..+++.++..+.++++...+ ....++..+-..+.+ .+.
T Consensus 109 ~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~ 188 (876)
T d1qgra_ 109 ASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 188 (876)
T ss_dssp HHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCH
T ss_pred HHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccH
Confidence 34444444444322 257777777765543 66777888888888887775432 133455555555543 345
Q ss_pred hHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCC
Q 000166 183 NVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEES 262 (1974)
Q Consensus 183 ~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~ 262 (1974)
.||..+...+..+..++... ......++..
T Consensus 189 ~v~~~a~~~l~~~~~~~~~~----~~~~~~~~~i---------------------------------------------- 218 (876)
T d1qgra_ 189 NVKLAATNALLNSLEFTKAN----FDKESERHFI---------------------------------------------- 218 (876)
T ss_dssp HHHHHHHHHHHHHGGGCHHH----HTSHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhh----hhHHHHHHHH----------------------------------------------
Confidence 67777666554444333211 0000000000
Q ss_pred CCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCC-ChhHHHHHHHHHhcchhHH
Q 000166 263 TADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPG-DFTEVCRTLKKLITDVNIA 340 (1974)
Q Consensus 263 ~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~-dy~dL~~~Lkk~l~DsNv~ 340 (1974)
. .-+...+.+..|+.|+.+++.+..+.+ .+..... -...+...+...+.+.+-.
T Consensus 219 -----------------------~-~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 274 (876)
T d1qgra_ 219 -----------------------M-QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE 274 (876)
T ss_dssp -----------------------H-HHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHH
T ss_pred -----------------------H-HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 0 122333445567788888888877764 3332211 0123455566666677778
Q ss_pred HHHHHHHHHHHHHHHhcc--------------------ccc-cchhhhHHHHHHHh-------ccCCHHHHHHHHHHHHH
Q 000166 341 VAVEAIQAIGNLARGLRT--------------------HFS-GSSRFLLPVLLEKL-------KEKKPTVAESLTQTLQA 392 (1974)
Q Consensus 341 vv~~A~~~i~~LA~gLr~--------------------~F~-~y~~~~l~~lLekl-------KEKK~~V~eA~~~aLda 392 (1974)
+...++.++..++..-.. .+. .+...++|.+++-+ .|.-.+++.++..++..
T Consensus 275 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 354 (876)
T d1qgra_ 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHH
Confidence 888888877777652211 011 12223334443333 23444689999999999
Q ss_pred HHHhcC-CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHH
Q 000166 393 MHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1974)
Q Consensus 393 ~~~~~~-~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1974)
++.... .-+..+++-+...+.+.++..|...+..+...........+...+..+++.+...++|.++.||.+++.+++.
T Consensus 355 l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~ 434 (876)
T d1qgra_ 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR 434 (876)
T ss_dssp HHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 987611 1134455666677788889999888777765555555555556678899999999999999999999999999
Q ss_pred HHHHhChhHH---------HHHhhcCCHHHHHHHHH--HHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhh
Q 000166 472 IAKSVGMRPL---------ERSIEKLDDVRRNKLSE--MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540 (1974)
Q Consensus 472 lmk~~Ge~~l---------~~~l~~Ld~~kk~KI~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 540 (1974)
+...++.... ..++..+++..+-.... .+.. -....
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~------------------------------l~~~~--- 481 (876)
T d1qgra_ 435 ICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSS------------------------------LAEAA--- 481 (876)
T ss_dssp HHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHH------------------------------HHHHH---
T ss_pred HHHHcchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHH------------------------------HHHHH---
Confidence 9988764321 11111222111000000 0000 00000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHH
Q 000166 541 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLE 620 (1974)
Q Consensus 541 ~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~ 620 (1974)
....+... .. .......++ .+
T Consensus 482 --~~~~~~~~----------------------------~~-~~~~~~~l~---------~~------------------- 502 (876)
T d1qgra_ 482 --YEAADVAD----------------------------DQ-EEPATYCLS---------SS------------------- 502 (876)
T ss_dssp --HHTTSCTT----------------------------SC-CCCCCCSST---------TT-------------------
T ss_pred --HHHHHHHH----------------------------HH-HhhhHHHHH---------HH-------------------
Confidence 00000000 00 000000000 00
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhh
Q 000166 621 AISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRA 700 (1974)
Q Consensus 621 a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~ 700 (1974)
++.+. +.++..+. .+.-.+. .+....++.+..+...........+..+++.+.+++..
T Consensus 503 -~~~i~-------------~~l~~~~~-~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 560 (876)
T d1qgra_ 503 -FELIV-------------QKLLETTD-RPDGHQN--NLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQ----- 560 (876)
T ss_dssp -HHHHH-------------HHHHHHTT-SCSSCST--THHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHH-----
T ss_pred -HHHHH-------------HHHHHHHH-hhccccH--hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-----
Confidence 01111 11111111 1111122 23333444444433322111111111111111111100
Q ss_pred HHHHHHHHHHHhhchHhHHHHHHHhh---hhcCChhhHHHHHHHHHHHHHHh----ccCcc--chHhHHHHHhhhcCCC-
Q 000166 701 HAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDF----GVSHL--KLKDLIDFCKDTGLQS- 770 (1974)
Q Consensus 701 ~a~e~L~~~aE~~~p~~V~~~l~~~~---~~~KnPKv~ae~l~wl~~ai~eF----G~~~l--~~K~lI~~~k~~~L~~- 770 (1974)
++... .....+....++..++...+..+ |-... ....++..+... +..
T Consensus 561 ---------------------~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~-l~~~ 618 (876)
T d1qgra_ 561 ---------------------VLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRM-FQST 618 (876)
T ss_dssp ---------------------HHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHH-C---
T ss_pred ---------------------HHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHH-HhcC
Confidence 00000 00011111222333333333322 21111 112344444443 443
Q ss_pred -ccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccc
Q 000166 771 -SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRED 849 (1974)
Q Consensus 771 -sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvD 849 (1974)
.+..||..+...++.+-..+|+.+..|+..+-|.++..+...
T Consensus 619 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~------------------------------------- 661 (876)
T d1qgra_ 619 AGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY------------------------------------- 661 (876)
T ss_dssp --CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC-------------------------------------
T ss_pred CCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCC-------------------------------------
Confidence 456799999999999999999999998877666665555321
Q ss_pred cccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchh--HhHHHHHHHHHHHHHHhcC
Q 000166 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN--KNLVMATLITLGAVASAMG 927 (1974)
Q Consensus 850 Is~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsN--k~lv~~al~ii~~lA~amG 927 (1974)
.++.+|..|++-+..+.......+.|-. .+++..|-.++.|.| ..+...++.+++.|+.++|
T Consensus 662 ---------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~ 725 (876)
T d1qgra_ 662 ---------------AEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHhHHhhhhhH-HHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 2456899999999888876667777754 788889999997665 6788999999999999999
Q ss_pred hhHHhhhhhhhHHHHHHhccCc-----------hhHHHHHHHHHHHHHHhcc------------chhhhHHHHHHHh---
Q 000166 928 PAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------LDKMVPYVTTALT--- 981 (1974)
Q Consensus 928 ~~~~k~~k~l~~~il~~l~D~K-----------~~vR~aa~~alda~~~~~g------------l~~~~~~i~~~L~--- 981 (1974)
..|.+|...+++-+...+..+- ..+|++++.|...++.... +.+.++.|...+.
T Consensus 726 ~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 805 (876)
T d1qgra_ 726 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIA 805 (876)
T ss_dssp GGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998877666321 1367777777666654321 2222333333322
Q ss_pred -cccCCcchHHH---HHHHHHHHhccCCCCc--chhhhhhhHhh-hccCCChHHHHHHHHHHHH
Q 000166 982 -DAKLGAEGRKD---LFDWLSKQLTGLSGFP--DAAHLLKPASI-AMTDKSSDVRKAAEACIVE 1038 (1974)
Q Consensus 982 -~~~~~p~~R~e---~l~wL~~~l~~~~~~~--~~~~~~~p~~~-~L~Dr~~dVRkaA~~~L~~ 1038 (1974)
++..+...+.. +++-|.+.+..-- .. ...+.+.+++. ++.+...+.|..|.-+...
T Consensus 806 ~~~~~~~~~~~~~~~~i~~l~~~~g~~~-~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~ 868 (876)
T d1qgra_ 806 GDEDHTDGVVACAAGLIGDLCTAFGKDV-LKLVEARPMIHELLTEGRRSKTNKAKTLARWATKE 868 (876)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHCTHH-HHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 23333344444 4444555553210 01 11244555333 6788889999888765543
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.7e-07 Score=123.46 Aligned_cols=456 Identities=15% Similarity=0.171 Sum_probs=293.2
Q ss_pred ccccCCCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChh-hhhhhhHHH
Q 000166 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADAD-AGRYAKEVC 95 (1974)
Q Consensus 17 ~erL~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~-~~~~~~~v~ 95 (1974)
.+.+.|.+|+.|-+|.--+....+...+.-.+-+....+.+-..+.|.|+.+++.++.++..|.+..... .......++
T Consensus 401 ~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 480 (888)
T d1qbkb_ 401 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 480 (888)
T ss_dssp HHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHH
T ss_pred HHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Confidence 4688999999999998777655432111111122222334456789999999999999888777653221 123356678
Q ss_pred HHHHhhhhcCChhhHHHHHHHHHHHHhhch------hhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccCh---
Q 000166 96 DAIAAKCLTGRPKTVEKAQAVFMLWVELEA------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--- 166 (1974)
Q Consensus 96 ~~lveK~L~~r~ktk~~a~e~~l~~vE~e~------~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~~--- 166 (1974)
+.++..++...++.++.|..++-.++|.-+ .+.+++.++..+..-+.++......++..++..-|.....+
T Consensus 481 ~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~ 560 (888)
T d1qbkb_ 481 TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 560 (888)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH
Confidence 888888777778888888888888887632 24667778888887777777777777777777777644332
Q ss_pred hHHHhhchhhh---cCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHH----hc-CC--CCCCcc-
Q 000166 167 KRILKMLPELF---DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELV----NV-SG--TARPTR- 235 (1974)
Q Consensus 167 K~ilk~l~~lf---~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efe----k~-~~--~~~P~R- 235 (1974)
..++..+...+ .+.++... ....-+..+...+|.. +.+.. ..+-+.-+..+...+. .. .+ ...|..
T Consensus 561 ~~l~~~l~~~~~~~~~~~~~~~-~~le~l~~i~~~~~~~-~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 637 (888)
T d1qbkb_ 561 QMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSG-FLPYC-EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKD 637 (888)
T ss_dssp HHHHHHHHHHHTTSCTTCTTHH-HHHHHHHHHHHHSTTT-THHHH-HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTH
T ss_pred HHHHHHHHHHHHhcccchHHHH-HHHHHHHHHHHHhHHH-HhhhH-HHHHHHHHHHHHHHHHHHHHHhcccccccchhHH
Confidence 22333333333 23444433 3444556666777764 33332 2111111222222211 11 00 011111
Q ss_pred hhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-
Q 000166 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS- 314 (1974)
Q Consensus 236 ~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~- 314 (1974)
++...-+.- ....... ...+.+ ++...++ . .-+...+.+..+..|..|+.-+..+..
T Consensus 638 ~~~~~l~~l---~~l~~~l------------~~~~~~--~~~~~~l----~-~~l~~~l~~~~~~vr~~a~~llgdl~~~ 695 (888)
T d1qbkb_ 638 FMIVALDLL---SGLAEGL------------GGNIEQ--LVARSNI----L-TLMYQCMQDKMPEVRQSSFALLGDLTKA 695 (888)
T ss_dssp HHHHHHHHH---HHHHHHH------------TTTTHH--HHHTSCH----H-HHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHh------------hhhhhh--hhhHhhH----H-HHHHHHhCCCChHHHHHHHHHHHHHHHh
Confidence 110000000 0000000 001111 1111111 1 235566788999999999887776654
Q ss_pred cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC--HHHHHHHHHHHHH
Q 000166 315 TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK--PTVAESLTQTLQA 392 (1974)
Q Consensus 315 ~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK--~~V~eA~~~aLda 392 (1974)
.+.-..+-..+++..|-+-+.|.+..|...|+.++|.||..++..|.+|+..+++.++..+.+-+ .+|.+.+..||--
T Consensus 696 ~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgr 775 (888)
T d1qbkb_ 696 CFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGR 775 (888)
T ss_dssp CGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 22211222567888888999999999999999999999999999999999999999999998644 4588877777776
Q ss_pred HHHhcC-----CChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHH
Q 000166 393 MHKAGC-----LNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (1974)
Q Consensus 393 ~~~~~~-----~~l~~~~e~i~~al~~-KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~ 466 (1974)
++.. | -.+++++...+.+|.+ ++..-|..++..|...+...+..... .+..++..+.. ..+..++++++..
T Consensus 776 l~~~-~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~-~l~~~~~~i~~-~~~~~~~~~~~~~ 852 (888)
T d1qbkb_ 776 LGYV-CPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ-DFIFFCDAVAS-WINPKDDLRDMFC 852 (888)
T ss_dssp HHHH-CHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHTT-CSSCCHHHHHHHH
T ss_pred HHHH-CHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHHH-HHHHHHHHHHh-cCCCCHHHHHHHH
Confidence 6554 2 1367788888888876 45677889999999999876655442 22344554444 3556799999999
Q ss_pred HHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH
Q 000166 467 SVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1974)
Q Consensus 467 ~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1974)
..|..+...+|......++..|++..+.++.+.|
T Consensus 853 ~~l~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~y 886 (888)
T d1qbkb_ 853 KILHGFKNQVGDENWRRFSDQFPLPLKERLAAFY 886 (888)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSSCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHhHHHHHHcCCHHHHHHHHHhh
Confidence 9999999999988889999999999999998875
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.6e-05 Score=93.77 Aligned_cols=385 Identities=13% Similarity=0.145 Sum_probs=212.5
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchh--HhHHHHHHHHHHHHHHhcChhHH---
Q 000166 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN--KNLVMATLITLGAVASAMGPAVE--- 931 (1974)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsN--k~lv~~al~ii~~lA~amG~~~~--- 931 (1974)
.+++.+-++|=.+|++|-+.++++.... .-+.+..|-..+.|.| .++-..|+-++...-..-.+...
T Consensus 4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~ 75 (458)
T d1ibrb_ 4 TILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 75 (458)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHH
Confidence 3667888899999999999999999742 2455666666675544 34545565555433322111111
Q ss_pred ---------hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh-cc---chhhhHHHHHHHhcccCCcchHHHHHHHHH
Q 000166 932 ---------KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA-VH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (1974)
Q Consensus 932 ---------k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~-~g---l~~~~~~i~~~L~~~~~~p~~R~e~l~wL~ 998 (1974)
.....+...++..+.+....+|.++ .++-.++.. .+ ...+++.+...+.++..++..+...+.-+.
T Consensus 76 ~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 154 (458)
T d1ibrb_ 76 QQRWLAIDANARREVKNYVLQTLGTETYRPSSAS-QCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIG 154 (458)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHH-HHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred hhhhccCCHHHHHHHHHHHHhccCCCcHHHHHHH-HHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 1122355667888888877666654 444444443 33 245677777777766555666666666555
Q ss_pred HHhccCCC---CcchhhhhhhHhhhcc--CCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCC
Q 000166 999 KQLTGLSG---FPDAAHLLKPASIAMT--DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGAS 1073 (1974)
Q Consensus 999 ~~l~~~~~---~~~~~~~~~p~~~~L~--Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~ 1073 (1974)
........ ......++..++..+. |.+.+||.+|-.++..++......... ......+...+..
T Consensus 155 ~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~-------~~~~~~~~~~l~~---- 223 (458)
T d1ibrb_ 155 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK-------ESERHFIMQVVCE---- 223 (458)
T ss_dssp HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS-------HHHHHHHHHHHHH----
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhh-------HHHHHHhHhhHHH----
Confidence 54433332 2234445556776774 667889998888777665433211000 0000111111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhcccccc
Q 000166 1074 QVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFE 1153 (1974)
Q Consensus 1074 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~ 1153 (1974)
T Consensus 224 -------------------------------------------------------------------------------- 223 (458)
T d1ibrb_ 224 -------------------------------------------------------------------------------- 223 (458)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHh-HHHHHHHHHHhccccchHHHHHHh
Q 000166 1154 DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV-LDILLRWFVLQFCKSNTTCLLKVL 1232 (1974)
Q Consensus 1154 ~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~i~~-lDlllkw~tlr~~dtN~~vl~k~L 1232 (1974)
.+-+.|+.-+..+++.|...+...++.+... .+++...+...+.+.+..+....+
T Consensus 224 ------------------------~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~ 279 (458)
T d1ibrb_ 224 ------------------------ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI 279 (458)
T ss_dssp ------------------------HTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHH
T ss_pred ------------------------HhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 1111122222222222222111111111111 122222222233444555555555
Q ss_pred hhhHHHHHHHHhc-------------CCcc----cHhHHhhhhhHHHHhh-------cCChHHHHHHHHHHHHHHhhccC
Q 000166 1233 EFLPELFDTLRDE-------------GYSL----TESEAAVFLPCLVEKS-------GHNIEKVREKMRELTKQIVNFYS 1288 (1974)
Q Consensus 1233 e~l~~l~~~l~~~-------------~y~l----sd~EA~~flP~Lv~K~-------Gd~ke~vR~~vr~i~~~~~~vyp 1288 (1974)
+++..+....... ...+ ...-...++|.+..-. .|....+|.....++..++..++
T Consensus 280 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~ 359 (458)
T d1ibrb_ 280 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 359 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhcc
Confidence 5555444332111 0111 1112223444444433 23444688888888888888887
Q ss_pred cc---chHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccccc--cchHHHHHHHhccCChhHHHHHHHHHHHHHHHhc
Q 000166 1289 AT---KTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQ--LKSLQIVASLTAERDGEIRKAALNTLATGYKILG 1363 (1974)
Q Consensus 1289 ~s---kvf~~l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~--~Kal~~iA~~i~drD~~VR~AALn~l~~~Y~~~G 1363 (1974)
.. .+++++.+++.+.||++|..++.-+|.+.+.-+-....+ ...++.|-.++.|.++.||.+|+.||+..-..++
T Consensus 360 ~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~ 439 (458)
T d1ibrb_ 360 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 439 (458)
T ss_dssp TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 43 455677789999999999999999999876433222222 3457999999999999999999999997765555
Q ss_pred hh
Q 000166 1364 ED 1365 (1974)
Q Consensus 1364 d~ 1365 (1974)
+.
T Consensus 440 ~~ 441 (458)
T d1ibrb_ 440 EA 441 (458)
T ss_dssp GG
T ss_pred cc
Confidence 43
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=0.00013 Score=85.78 Aligned_cols=292 Identities=12% Similarity=0.099 Sum_probs=188.6
Q ss_pred HHHHHHHHHHhhchH----hHHHHHHHhhh-hcCChhhHHHHHHHHHHHHHHhccCccc--hHhHHHHHhhhcCC--Ccc
Q 000166 702 AMKCLTTFSEAVGPG----FIFERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGVSHLK--LKDLIDFCKDTGLQ--SSA 772 (1974)
Q Consensus 702 a~e~L~~~aE~~~p~----~V~~~l~~~~~-~~KnPKv~ae~l~wl~~ai~eFG~~~l~--~K~lI~~~k~~~L~--~sN 772 (1974)
+..++..++....+. -++..+...+. ...++.++..++..+.......+..... ...++..+-.. +. +++
T Consensus 108 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~-l~~~~~~ 186 (458)
T d1ibrb_ 108 ASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQG-MRKEEPS 186 (458)
T ss_dssp HHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHH-HSTTCCC
T ss_pred HHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH-hcccccC
Confidence 445555555544332 34555655543 3455677777888887777665544332 34556665554 54 467
Q ss_pred HHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccccc
Q 000166 773 AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 852 (1974)
Q Consensus 773 ~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~ 852 (1974)
..||.+|++.++.+..+..+...... ..+
T Consensus 187 ~~v~~~a~~~l~~~~~~~~~~~~~~~--~~~------------------------------------------------- 215 (458)
T d1ibrb_ 187 NNVKLAATNALLNSLEFTKANFDKES--ERH------------------------------------------------- 215 (458)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHTSHH--HHH-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHH--HHH-------------------------------------------------
Confidence 88999999999888765432211100 000
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChh---
Q 000166 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA--- 929 (1974)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~--- 929 (1974)
.+.+.+..-+.+.+|++|..+++.+..|++...+.+.|...--+...+...+.+.+..++..|+.++..++..-...
T Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~ 295 (458)
T d1ibrb_ 216 FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 295 (458)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01223444567789999999999999999877778888763334444566668889999999999988887543111
Q ss_pred ------------------HHhhhhhhhHHHHHHhc-------cCchhHHHHHHHHHHHHHHhcc---chhhhHHHHHHHh
Q 000166 930 ------------------VEKSSKGVLSDILKCLG-------DNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALT 981 (1974)
Q Consensus 930 ------------------~~k~~k~l~~~il~~l~-------D~K~~vR~aa~~alda~~~~~g---l~~~~~~i~~~L~ 981 (1974)
+..+...+.|.+...+. |....+|.++..++.......| ++.+++.+...|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~ 375 (458)
T d1ibrb_ 296 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 375 (458)
T ss_dssp HCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTT
T ss_pred hhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhc
Confidence 12234445555555543 4555799999999999998887 3344445555555
Q ss_pred cccCCcchHHHHHHHHHHHhccCCC---CcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHH
Q 000166 982 DAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (1974)
Q Consensus 982 ~~~~~p~~R~e~l~wL~~~l~~~~~---~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~ 1047 (1974)
++ ++..|...+.-|..-...... .+....++..++.+|+|.++.||.+|..+|+.+...++...
T Consensus 376 s~--~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~ 442 (458)
T d1ibrb_ 376 NP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 442 (458)
T ss_dssp CS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC
T ss_pred CC--CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 44 566776666555433322221 23345566668889999999999999999999988887553
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.81 E-value=0.00061 Score=80.07 Aligned_cols=372 Identities=11% Similarity=0.121 Sum_probs=217.7
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhc--cc-----hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~--~~-----~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~ 676 (1974)
++++.+|.+.|--.+++|...+.+.+..... .+ .....|++++. +..|..|+..+..+|..++.....
T Consensus 16 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~~v~~~a~~~L~~la~~~~~ 90 (434)
T d1q1sc_ 16 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 90 (434)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTT-----CGGGHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHc-----cCCCHHHHHHHHHHHHHHhcCChh
Confidence 4667888999999999999999876643111 11 12345566553 234567888899999888743211
Q ss_pred CCccch--hhhccchhhcccc--chhhhHHHHHHHHHHHhh--chHhH-----HHHHHHhhhhcCChhh---HHHHHHHH
Q 000166 677 FPKKCV--VLCLLGISERVAD--IKTRAHAMKCLTTFSEAV--GPGFI-----FERLYKIMKDHKNPKV---LSEGILWM 742 (1974)
Q Consensus 677 fs~~~~--~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~--~p~~V-----~~~l~~~~~~~KnPKv---~ae~l~wl 742 (1974)
.+..+ .-+++.++.-+.. ..++..+..+|..++... .-..+ +..++..+........ ....+.|.
T Consensus 91 -~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 169 (434)
T d1q1sc_ 91 -QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 169 (434)
T ss_dssp -HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred -hhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHH
Confidence 11111 1234444444443 468888888888877421 11222 2334444332222222 22333443
Q ss_pred HHHHHHhccCc---cchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCC
Q 000166 743 VSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (1974)
Q Consensus 743 ~~ai~eFG~~~---l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~ 819 (1974)
...+-...... .....+++.+... +.+.++.+|..|...+..+...-.. ....+ ..
T Consensus 170 l~~~~~~~~~~~~~~~~~~~l~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~---------------~~---- 228 (434)
T d1q1sc_ 170 LSNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNE-RIEMV---------------VK---- 228 (434)
T ss_dssp HHHHTCCCTTCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSCHH-HHHHH---------------HT----
T ss_pred HHHHhhcccccchhhhhhhHHHHHHHH-HhccccchhhhHHhhhcccchhhhh-hHHHH---------------hh----
Confidence 33332222111 1246678888787 9999999999998877665321100 00100 00
Q ss_pred CCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHH
Q 000166 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFG 898 (1974)
Q Consensus 820 ~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~ 898 (1974)
..+-+.+++-+.+.++..+..++..+..++.. +....... -.+.+.
T Consensus 229 --------------------------------~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~-~~~~~~~~~~~~~~~ 275 (434)
T d1q1sc_ 229 --------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALA 275 (434)
T ss_dssp --------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGG
T ss_pred --------------------------------cccchhcccccccchhhhhhchhhhhhhHHhh-hhHHHHHHHhccccc
Confidence 01234577778889999999999999888742 11111110 022455
Q ss_pred HHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchh-----
Q 000166 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----- 971 (1974)
Q Consensus 899 aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~----- 971 (1974)
.|..-+.+.+..+...|+.++..++..- .....+ ...++|.++..+.+....+|..+..++.......+.+.
T Consensus 276 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~ 354 (434)
T d1q1sc_ 276 VFPSLLTNPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 354 (434)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHhhcccchhhhHHHHHHHhhhcccc-chhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6777788889999999999999987642 333332 24588999999999999999999999988776544322
Q ss_pred ---hhHHHHHHHhcccCCcchHHHHHHHHHHHhc---cCCCCcchhhh-----hhhHhhhc-cCCChHHHHHHHHHHHH
Q 000166 972 ---MVPYVTTALTDAKLGAEGRKDLFDWLSKQLT---GLSGFPDAAHL-----LKPASIAM-TDKSSDVRKAAEACIVE 1038 (1974)
Q Consensus 972 ---~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~---~~~~~~~~~~~-----~~p~~~~L-~Dr~~dVRkaA~~~L~~ 1038 (1974)
+++.+...|.+. +++.+..++.=|..-+. ........... ....+..| .+.|.+||+.|..+|..
T Consensus 355 ~~~~i~~L~~ll~~~--d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~ 431 (434)
T d1q1sc_ 355 HCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431 (434)
T ss_dssp HTTCHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 244566666543 46667666654443322 22221111111 11223334 78899999999988754
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.084 Score=63.39 Aligned_cols=145 Identities=14% Similarity=0.132 Sum_probs=106.1
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHH--HhccccccchhhhHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhcCCChh-
Q 000166 327 CRTLKKLITDVNIAVAVEAIQAIGNLAR--GLRTHFSGSSRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKAGCLNLV- 402 (1974)
Q Consensus 327 ~~~Lkk~l~DsNv~vv~~A~~~i~~LA~--gLr~~F~~y~~~~l~~lLeklKE-KK~~V~eA~~~aLda~~~~~~~~l~- 402 (1974)
+..|.+.|.|.+..+...|+.+++.|++ ..|..|.. ...+++.++..++. ....+++.+..+|-.+... .....
T Consensus 19 ip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~-~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 96 (529)
T d1jdha_ 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR-SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLA 96 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHT-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHH-hhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHH
Confidence 6778888888889999999999999985 23333332 24578999999975 4678888888888766432 11111
Q ss_pred ----hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHh-hhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000166 403 ----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 403 ----~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~-~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1974)
..++.+...|++.++.++..++.-|.......+.... .+ ....+|.++..+++.++++|..++.+|..+..
T Consensus 97 i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 172 (529)
T d1jdha_ 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH-HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhh-HHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhh
Confidence 2356777889999999999999888877654432111 11 13478999999999999999999999987753
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.00025 Score=79.38 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=131.9
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCC--CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc-cchh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSR 365 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~--~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~-~y~~ 365 (1974)
..-....+..+.+|..|++.|..|+.+.-... -..|-+...|...+.+.|..|...|+.+|+.++..-...-. -...
T Consensus 21 ~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~ 100 (264)
T d1xqra1 21 TAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL 100 (264)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455677889999999999998875321110 12344455566777889999999999999999975321111 1234
Q ss_pred hhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCCC-h-----hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH
Q 000166 366 FLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1974)
Q Consensus 366 ~~l~~lLeklK-EKK~~V~eA~~~aLda~~~~~~~~-l-----~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~ 438 (1974)
..+|.++..+. +.-+.|+..+..||..++.. +.. . ...++.+...+.+.++.++..++..|...+...+...
T Consensus 101 ~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 179 (264)
T d1xqra1 101 GALRKLLRLLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 179 (264)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CchHHHHHHhhcCCCHHHHHHHHHHHHHHhcc-chhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHH
Confidence 67899999884 67788999999999888764 211 1 1235677889999999999998888877665433211
Q ss_pred HhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 439 VLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 439 ~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
..+. ...+|.++..+.+.+++||+.|..+|+.|...
T Consensus 180 -~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 180 -GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp -HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred -HHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 1222 23789999999999999999999999988643
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.0019 Score=70.78 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=42.9
Q ss_pred HHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHH
Q 000166 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1974)
Q Consensus 721 ~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~l 786 (1974)
++++. .++.||.|+..++..|. .+|- ...++.+... +.+.|+.||..|+..|+.+
T Consensus 23 ~L~~~-L~d~~~~vR~~A~~~L~----~~~~-----~~~~~~l~~~-l~d~~~~vr~~a~~aL~~l 77 (276)
T d1oyza_ 23 ELFRL-LDDHNSLKRISSARVLQ----LRGG-----QDAVRLAIEF-CSDKNYIRRDIGAFILGQI 77 (276)
T ss_dssp HHHHH-TTCSSHHHHHHHHHHHH----HHCC-----HHHHHHHHHH-HTCSSHHHHHHHHHHHHHS
T ss_pred HHHHH-hcCCCHHHHHHHHHHHH----hhCC-----HhHHHHHHHH-HcCCCHHHHHHHHHHHHHh
Confidence 45555 47999999999998664 4563 4566777777 8999999999999988765
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.32 E-value=0.024 Score=68.07 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=130.7
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCC---hhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccc-
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~d---y~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y- 363 (1974)
.+...+.+..=..+..++..+.++++..+-.+-+ -..++..|-..+. +.|..+...|+.++..|+.+-.......
T Consensus 80 ~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~ 159 (503)
T d1wa5b_ 80 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVV 159 (503)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5778889999999999999998877543322211 1234566777787 7888899999999999997643222111
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000166 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1974)
-..++|.++..+......|++.+..+|-.++.. +...- .+++.+...+.+.++.++..++..|..........
T Consensus 160 ~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~-~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~ 238 (503)
T d1wa5b_ 160 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 238 (503)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred hCCChHHHHHHhcCCChhHHHHHHHHHHHHhhh-hHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccc
Confidence 345789999999999999999998888887653 11111 23466777888999988877665555444332211
Q ss_pred HHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 438 ~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
........++|.+++++...+++++..++.+|..+.
T Consensus 239 ~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~ 274 (503)
T d1wa5b_ 239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 274 (503)
T ss_dssp CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 111234678999999999999999999998887665
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.07 E-value=0.00081 Score=79.00 Aligned_cols=272 Identities=18% Similarity=0.189 Sum_probs=162.0
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCC
Q 000166 759 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1974)
Q Consensus 759 lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l--~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1974)
.++.+... |.+.++.||..|+..|+.+-. -++..+..+ .+.-+.++..+...-... ......+.....-+
T Consensus 100 ~i~~l~~~-L~~~~~~~~~~a~~~L~nl~~-~~~~~~~~i~~~~~~~~l~~~l~~~~~~~------~~~~~~~~~~~~l~ 171 (434)
T d1q1sc_ 100 AIPAFISL-LASPHAHISEQAVWALGNIAG-DGSAFRDLVIKHGAIDPLLALLAVPDLST------LACGYLRNLTWTLS 171 (434)
T ss_dssp HHHHHHHH-TTCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTCHHHHHHHTCSSCGGG------SCHHHHHHHHHHHH
T ss_pred chhhhhhc-cccCCHHHHHHHHHHHHHHhc-cchHHHHHHHHhhhhhHHHHHHHhccccc------chHHHHHHHHHHHH
Confidence 45555666 899999999999988876531 123333333 233333433332110000 00000000000000
Q ss_pred CCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHH
Q 000166 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1974)
Q Consensus 837 ~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al 916 (1974)
.-.......+..+....+-+.+..-+.+.++..|..++..+..+....+..+.--..+.++..|..-+.+.|..++..++
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al 251 (434)
T d1q1sc_ 172 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 251 (434)
T ss_dssp HHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchh
Confidence 00000112233333334445566778899999999999999888642111111101134677777778889999999999
Q ss_pred HHHHHHHHhcChhHHhh--hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-c------hhhhHHHHHHHhcccCCc
Q 000166 917 ITLGAVASAMGPAVEKS--SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGA 987 (1974)
Q Consensus 917 ~ii~~lA~amG~~~~k~--~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l------~~~~~~i~~~L~~~~~~p 987 (1974)
.+++.++..-. ....+ -..+++.++..|.+.+..+|..+..+|........ . ..+++.+...|.++ ++
T Consensus 252 ~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~--~~ 328 (434)
T d1q1sc_ 252 RAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DF 328 (434)
T ss_dssp HHHHHHTTSCH-HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS--CH
T ss_pred hhhhhHHhhhh-HHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc--Ch
Confidence 99999886432 23322 24577889999999999999999999987764321 1 23455667777654 57
Q ss_pred chHHHHHHHHHHHhccCCCCcch-----hhhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 988 EGRKDLFDWLSKQLTGLSGFPDA-----AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 988 ~~R~e~l~wL~~~l~~~~~~~~~-----~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
..|.+...-|.. +......... ...+.+++..|++++.+++..+-.+|..++..
T Consensus 329 ~v~~~a~~~l~n-l~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~ 387 (434)
T d1q1sc_ 329 KTQKEAAWAITN-YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 387 (434)
T ss_dssp HHHHHHHHHHHH-HHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 788887655543 3322221111 22467788999999999999999999888764
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.89 E-value=0.0045 Score=74.61 Aligned_cols=267 Identities=15% Similarity=0.183 Sum_probs=165.1
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccC-cC
Q 000166 759 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES-TS 835 (1974)
Q Consensus 759 lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l--~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~-~~ 835 (1974)
++..+... |.+.+..|+..|+.+|+.|-. -++..+..+ .+.-+.++..+... . ....+.... ..
T Consensus 163 ~i~~l~~l-L~s~~~~i~~~a~~~L~nia~-~~~~~r~~l~~~~~~~~L~~ll~~~--------~---~~~~~~~~~~l~ 229 (503)
T d1wa5b_ 163 AVPLFIQL-LYTGSVEVKEQAIWALGNVAG-DSTDYRDYVLQCNAMEPILGLFNSN--------K---PSLIRTATWTLS 229 (503)
T ss_dssp CHHHHHHH-HHHCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTCHHHHHHGGGSC--------C---HHHHHHHHHHHH
T ss_pred ChHHHHHH-hcCCChhHHHHHHHHHHHHhh-hhHHHHHHHHhhcccccchhhcccC--------C---HHHHHHHHHHHH
Confidence 45555566 788899999999998887642 234455544 24445555443210 0 000000000 00
Q ss_pred CCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHH
Q 000166 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 915 (1974)
Q Consensus 836 ~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~a 915 (1974)
.-. ...+..+..++...+-+.|+.-+.+.++..+..++..+..++......++.-.-..++..|-..+...|..+...+
T Consensus 230 nl~-~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a 308 (503)
T d1wa5b_ 230 NLC-RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 308 (503)
T ss_dssp HHH-CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHh-cCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhH
Confidence 000 0012233334444556678888999999999999999988874221122211112356677777888889999999
Q ss_pred HHHHHHHHHhcChhHHhh-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-------chhhhHHHHHHHhcccCCc
Q 000166 916 LITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGA 987 (1974)
Q Consensus 916 l~ii~~lA~amG~~~~k~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-------l~~~~~~i~~~L~~~~~~p 987 (1974)
+.+++.++..-+...... -..+++.+...+.+.++.+|..+..+|..++.... -..+++.+...|.++ ++
T Consensus 309 l~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~--~~ 386 (503)
T d1wa5b_ 309 LRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA--EY 386 (503)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS--CH
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC--Ch
Confidence 999999986544333222 23578899999999999999999999877653211 134556677777754 46
Q ss_pred chHHHHHHHHHHHhccCCCCcc-h-----hhhhhhHhhhccCCChHHHHHHHHHHHHHHH
Q 000166 988 EGRKDLFDWLSKQLTGLSGFPD-A-----AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 988 ~~R~e~l~wL~~~l~~~~~~~~-~-----~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
..|.+....|..........++ . ..++.+++..|...+.++...+-++|..++.
T Consensus 387 ~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~ 446 (503)
T d1wa5b_ 387 KTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 446 (503)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7788886555544433332222 1 2356778889999999999888888777664
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.015 Score=63.33 Aligned_cols=150 Identities=13% Similarity=0.069 Sum_probs=106.6
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHH
Q 000166 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1974)
Q Consensus 329 ~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i 408 (1974)
.|.+.|.|.|-.|-..|+.+++.+.. ...+|.++..++|+-+.||..+..+|-.+... ....+.+++.+
T Consensus 23 ~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~-~~~~~~~~~~l 91 (276)
T d1oyza_ 23 ELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDNVFNIL 91 (276)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccccchHHHH
Confidence 36678999999999999999987642 45689999999999999999888888766432 12233344444
Q ss_pred H-HHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000166 409 K-TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1974)
Q Consensus 409 ~-~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~ 487 (1974)
. ..+++.+|.||...+.+|.+.-...+. ..+.+++.+...++|.++.||.++..+++.+........+..++..
T Consensus 92 ~~~~l~d~~~~vr~~a~~aL~~~~~~~~~-----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~~~~~l~~l~~~ 166 (276)
T d1oyza_ 92 NNMALNDKSACVRATAIESTAQRCKKNPI-----YSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKD 166 (276)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTC
T ss_pred HHHHhcCCChhHHHHHHHHHHHHccccch-----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchHHHHHHHHHhccc
Confidence 3 467899999999999999876543321 1245788899999999999999998888765544434445555555
Q ss_pred CCHHHHH
Q 000166 488 LDDVRRN 494 (1974)
Q Consensus 488 Ld~~kk~ 494 (1974)
-++..+.
T Consensus 167 ~~~~~~~ 173 (276)
T d1oyza_ 167 PNGDVRN 173 (276)
T ss_dssp SSHHHHH
T ss_pred ccchhhh
Confidence 4544333
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=1.5 Score=51.85 Aligned_cols=300 Identities=12% Similarity=0.085 Sum_probs=167.1
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhh--hhHHHHHHHhhhhc--CChhhHHHHHHHHHHHHhhchh-----
Q 000166 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELEAV----- 126 (1974)
Q Consensus 56 l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~--~~~v~~~lveK~L~--~r~ktk~~a~e~~l~~vE~e~~----- 126 (1974)
.+-+.+.|.+..++..+..++..+...... .... ..++++.++ +.|. ..+.++..|..++..+..-+..
T Consensus 21 ~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~-~~~~~~~~~~v~~l~-~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 98 (529)
T d1jdha_ 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIV-RTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 98 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHH-HHHHHTCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccHH-HHHHHHhhhHHHHHH-HHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 345667889999999999988776533211 1111 235666666 4564 4677888888777666543221
Q ss_pred -hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCc--cChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCch
Q 000166 127 -DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP 203 (1974)
Q Consensus 127 -~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kv--v~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~ 203 (1974)
...+..|...+.+.+|+++..|+.+|.++........ +--.-.++.|-.++.+.+..+|..+...+..+-. +...
T Consensus 99 ~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~ 176 (529)
T d1jdha_ 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQE 176 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHH
T ss_pred HCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhh--hhhH
Confidence 1457788899999999999999999998876655421 1112245667778899999999998887766632 1111
Q ss_pred hhHHHhh-hchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCccccc
Q 000166 204 VKTILFE-KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDIL 282 (1974)
Q Consensus 204 lk~~L~~-~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl 282 (1974)
-+..+.+ +--+....-| .. ....+ ++..... .- ..-+. .. +. ...+++. .+
T Consensus 177 ~~~~~~~~~~~~~L~~ll----~~--~~~~~---~~~~~~~-~l-~~ls~---~~---~~---------~~~~~~~-g~- 228 (529)
T d1jdha_ 177 SKLIILASGGPQALVNIM----RT--YTYEK---LLWTTSR-VL-KVLSV---CS---SN---------KPAIVEA-GG- 228 (529)
T ss_dssp HHHHHHHTTHHHHHHHHH----HH--CCCHH---HHHHHHH-HH-HHHTT---ST---TH---------HHHHHHT-TH-
T ss_pred HHHHHHhcccchHHHHHH----Hh--hhhHH---HHHHHHH-HH-hhhhc---cc---cc---------cchhhhh-hh-
Confidence 1111111 1111111111 00 00001 1100000 00 00000 00 00 0000000 11
Q ss_pred CCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc---cc
Q 000166 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR---TH 359 (1974)
Q Consensus 283 ~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr---~~ 359 (1974)
+ ..+...+.+.....+..++..+..+.....-. .....++..|.+++.+.+..+...|+.+++.|+.+=. ..
T Consensus 229 --~--~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~-~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 303 (529)
T d1jdha_ 229 --M--QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 303 (529)
T ss_dssp --H--HHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred --h--hhHHHHhcccchhhhhhhhhHHHhccccccch-hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHH
Confidence 1 12444456667777778888877775443322 2345688899999987788899999999999985422 11
Q ss_pred cccchhhhHHHHHHHhc--cCCHHHHHHHHHHHHHHH
Q 000166 360 FSGSSRFLLPVLLEKLK--EKKPTVAESLTQTLQAMH 394 (1974)
Q Consensus 360 F~~y~~~~l~~lLeklK--EKK~~V~eA~~~aLda~~ 394 (1974)
+.. ...++.++.-+. ..+..+.+++..+|-.+.
T Consensus 304 i~~--~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~ 338 (529)
T d1jdha_ 304 VCQ--VGGIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp HHH--TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHH--hhhHHHHHHHHHhhhcchhHHHHHHHHhhccc
Confidence 222 234555655553 345667777766666554
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.30 E-value=0.0034 Score=60.62 Aligned_cols=89 Identities=16% Similarity=0.088 Sum_probs=71.2
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhh
Q 000166 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1974)
Q Consensus 366 ~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~ 445 (1974)
..++++++.++|..+.||..+..+|-.+ .-...++.+...+++++|.||..++.-|.+. .. ..
T Consensus 22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~------~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i----~~-------~~ 84 (111)
T d1te4a_ 22 EAFEPLLESLSNEDWRIRGAAAWIIGNF------QDERAVEPLIKLLEDDSGFVRSGAARSLEQI----GG-------ER 84 (111)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH----CS-------HH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc------chhhhHHHHHhhhccchhHHHHHHHHHHHHh----Cc-------cc
Confidence 4578899999999999998877766432 2345778889999999999999988877653 11 23
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHH
Q 000166 446 YVPICMECLNDGTPEVRDAAFSVLAA 471 (1974)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1974)
..+.+.++++|.++.||.+|..+|.+
T Consensus 85 ~~~~L~~ll~d~~~~vr~~A~~aL~t 110 (111)
T d1te4a_ 85 VRAAMEKLAETGTGFARKVAVNYLET 110 (111)
T ss_dssp HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 46888899999999999999998753
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.13 E-value=0.0063 Score=58.60 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=70.3
Q ss_pred hhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccccccchHHHHH
Q 000166 1258 LPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337 (1974)
Q Consensus 1258 lP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~~Kal~~iA 1337 (1974)
+|.|+.-+.|+...||... +..+..+ ...+..++|++.|+++|+..|.+++.-||.+ ++..+++.+.
T Consensus 24 ~~~L~~~l~d~~~~vR~~a---~~~L~~~-~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i---------~~~~~~~~L~ 90 (111)
T d1te4a_ 24 FEPLLESLSNEDWRIRGAA---AWIIGNF-QDERAVEPLIKLLEDDSGFVRSGAARSLEQI---------GGERVRAAME 90 (111)
T ss_dssp HHHHHHGGGCSCHHHHHHH---HHHHGGG-CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH---------CSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH---HHHHHhc-chhhhHHHHHhhhccchhHHHHHHHHHHHHh---------CccchHHHHH
Confidence 5778888888888888653 3344433 4567889999999999999999999999875 4557889999
Q ss_pred HHhccCChhHHHHHHHHHH
Q 000166 1338 SLTAERDGEIRKAALNTLA 1356 (1974)
Q Consensus 1338 ~~i~drD~~VR~AALn~l~ 1356 (1974)
.++.|.|+.||.+|+.+|.
T Consensus 91 ~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 91 KLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHTTSCCTHHHHHHHHHGG
T ss_pred HHHcCCCHHHHHHHHHHHH
Confidence 9999999999999999874
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.50 E-value=5.2 Score=50.36 Aligned_cols=179 Identities=12% Similarity=0.142 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-----cchhHhHHHHHHHHHHHHHHhcChh-HHhhhhhhhHHHHHHh
Q 000166 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCL 945 (1974)
Q Consensus 872 EaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-----~DsNk~lv~~al~ii~~lA~amG~~-~~k~~k~l~~~il~~l 945 (1974)
..++.+..++......+.|.. ..++..|...+ .++|...+...+.+++.+....|+. +..+...++|.+...+
T Consensus 572 ~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~ 650 (959)
T d1wa5c_ 572 FLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVF 650 (959)
T ss_dssp HHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 367788888877667788864 77777776554 3456778888999999999999875 5677888999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHhcc-c-hhhhHHHHHHHhcc-cCCcchHHHHHHHHHHHhccCCC-CcchhhhhhhHhhhc
Q 000166 946 GDNKKHMRECTLTVLDAWLAAVH-L-DKMVPYVTTALTDA-KLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAM 1021 (1974)
Q Consensus 946 ~D~K~~vR~aa~~alda~~~~~g-l-~~~~~~i~~~L~~~-~~~p~~R~e~l~wL~~~l~~~~~-~~~~~~~~~p~~~~L 1021 (1974)
........+.+...+..+...++ + ..+.+.+...+... .....--.+++..+...+...+. .......+..+..++
T Consensus 651 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l 730 (959)
T d1wa5c_ 651 SEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLI 730 (959)
T ss_dssp HTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHH
Confidence 88888888888888888887664 2 22222222222100 00111233444433333222111 122334555555566
Q ss_pred cCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh
Q 000166 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1974)
Q Consensus 1022 ~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~ 1053 (1974)
.+..- +..|..+++.++..++.+.+...+.
T Consensus 731 ~~~~~--~~~~~~ll~~ii~~~~~~~~~~~l~ 760 (959)
T d1wa5c_ 731 ASKAY--EVHGFDLLEHIMLLIDMNRLRPYIK 760 (959)
T ss_dssp TCTTT--HHHHHHHHHHHHHHSCHHHHGGGHH
T ss_pred CCCcc--hHHHHHHHHHHHHHCchhhhHhHHH
Confidence 55433 4678899999999998776655543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.0077 Score=66.87 Aligned_cols=173 Identities=13% Similarity=0.136 Sum_probs=116.5
Q ss_pred CCCChHHHHHHHHHHHHHHHH---cccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhh
Q 000166 863 ESPDWKVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1974)
Q Consensus 863 ~d~~WK~RkEaLe~v~~il~~---ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1974)
...++.+|..|++.+..+++. ++..++- |-+..-|..-+.+.|..+...|+.+|+.++..-. .+... ....
T Consensus 27 ~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~---gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~-~~~~~~~~~~~ 102 (264)
T d1xqra1 27 QAADQQEREGALELLADLCENMDNAADFCQL---SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGA 102 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHT---THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTH
T ss_pred cCCCHHHHHHHHHHHHHHHcCHHHHHHHHHc---CCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCc
Confidence 355789999999999999953 3223332 4455556667788999999999999999996432 22222 3468
Q ss_pred hHHHHHHhc-cCchhHHHHHHHHHHHHHHhcc--chh-----hhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCc-
Q 000166 938 LSDILKCLG-DNKKHMRECTLTVLDAWLAAVH--LDK-----MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP- 1008 (1974)
Q Consensus 938 ~~~il~~l~-D~K~~vR~aa~~alda~~~~~g--l~~-----~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~- 1008 (1974)
+|.++..|. |.-..+|..+..||........ ... .++.+...|.++ ++..+.....-|..-+...+...
T Consensus 103 i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~ 180 (264)
T d1xqra1 103 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKG 180 (264)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC--chHHHHHHHHHHHHHHhccHHHHH
Confidence 899999995 6778899999999988775432 222 245677777754 56666665544433222222211
Q ss_pred ch--hhhhhhHhhhccCCChHHHHHHHHHHHHHHH
Q 000166 1009 DA--AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 1009 ~~--~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
.+ ...+.+++.-|.+.+++||..|-.+|..+..
T Consensus 181 ~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 181 TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp HHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 11 1235557777899999999999988887754
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=2.9 Score=46.57 Aligned_cols=148 Identities=17% Similarity=0.111 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhcccccc------chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 000166 324 TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSG------SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 324 ~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~------y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~ 396 (1974)
...++.|...+. ..+..+...+...+..++..-...+.. .....+|.+++-+++....|+.++..+|..+...
T Consensus 282 ~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~ 361 (457)
T d1xm9a1 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred hcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC
Confidence 345666666655 445556666666666665433221111 1235689999999999999999999999888754
Q ss_pred cCCChhh----hHHHHHHHhhc------CCchhHHHHHHHHHHHHhhCChhHHhHhhh-hhHHHHHhhhC-CCCHHHHHH
Q 000166 397 GCLNLVD----VVEDVKTSVKN------KVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECLN-DGTPEVRDA 464 (1974)
Q Consensus 397 ~~~~l~~----~~e~i~~al~~------KnP~vk~etl~~L~r~l~~~~~~~~~~~~k-~~~~~l~k~l~-Ds~~~VR~a 464 (1974)
...-.. .++.+...+.+ ..+.++..++..|.......+.. -..+.. ..++.++..+. +.++.|+++
T Consensus 362 -~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~g~i~~L~~l~~~~~~~~~~~a 439 (457)
T d1xm9a1 362 -PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEA 439 (457)
T ss_dssp -GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -hhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCCHHHHHHHHhCCCCHHHHHH
Confidence 111111 23445555542 23468888888888776544321 112222 36788888875 567899999
Q ss_pred HHHHHHHHH
Q 000166 465 AFSVLAAIA 473 (1974)
Q Consensus 465 A~~~l~~lm 473 (1974)
|+.+|.+|.
T Consensus 440 A~~~L~~L~ 448 (457)
T d1xm9a1 440 ARLLLSDMW 448 (457)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHH
Confidence 999998874
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.66 E-value=0.17 Score=51.44 Aligned_cols=98 Identities=16% Similarity=0.252 Sum_probs=76.7
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
.+...||. +.-+|=.+| | -+|.+.-|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+
T Consensus 20 ~l~~~dw~----~ileicD~I---~--~~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl 90 (145)
T d1ujka_ 20 LNKELDWA----SINGFCEQL---N--EDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFL 90 (145)
T ss_dssp TCSSCCHH----HHHHHHHHH---T--SSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHH
T ss_pred CCCCcCHH----HHHHHHHHH---h--CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHH
Confidence 35678994 333333333 2 2344446899999999999999999999999999999999999765 56788
Q ss_pred HHHHHHhccC------chhHHHHHHHHHHHHHHhc
Q 000166 939 SDILKCLGDN------KKHMRECTLTVLDAWLAAV 967 (1974)
Q Consensus 939 ~~il~~l~D~------K~~vR~aa~~alda~~~~~ 967 (1974)
..+...+.++ ...|++-+++.+..|....
T Consensus 91 ~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f 125 (145)
T d1ujka_ 91 NELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 125 (145)
T ss_dssp HHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence 8888888653 3479999999999998776
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.04 E-value=0.19 Score=50.96 Aligned_cols=101 Identities=18% Similarity=0.326 Sum_probs=77.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+...||.. +-+|++-.| -++.+--|.+++|++||.+.|.+++..||.++..+..=.|+.|... .+-++.
T Consensus 18 ~~~~dw~~-------il~icD~I~--~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~ 88 (145)
T d1dvpa1 18 RLEPDWPS-------ILLICDEIN--QKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (145)
T ss_dssp CSSCCHHH-------HHHHHHHHH--TTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCCCHHH-------HHHHHHHHh--CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHH
Confidence 56678864 333333222 1344447899999999999999999999999999999999999875 456777
Q ss_pred HHHHHhccC-chhHHHHHHHHHHHHHHhccchh
Q 000166 940 DILKCLGDN-KKHMRECTLTVLDAWLAAVHLDK 971 (1974)
Q Consensus 940 ~il~~l~D~-K~~vR~aa~~alda~~~~~gl~~ 971 (1974)
.+...+..+ -..|++-+++.+..|....+-++
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 121 (145)
T d1dvpa1 89 MFSSFLESTPHENVRQKMLELVQTWAYAFRSSD 121 (145)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 776666443 45799999999999999876443
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=0.82 Score=46.03 Aligned_cols=112 Identities=15% Similarity=0.244 Sum_probs=81.7
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
.+...||.. .-++=.+|+. ++.+.-|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+
T Consensus 13 ~~~~~dw~~----il~icD~I~~-----~~~~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl 83 (143)
T d1mhqa_ 13 SMSEQDWSA----IQNFCEQVNT-----DPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFL 83 (143)
T ss_dssp TCSSCCHHH----HHHHHHHHHH-----SSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCCcCHHH----HHHHHHHHHc-----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHH
Confidence 356789953 3334344432 233336899999999999999999999999999999999999765 55688
Q ss_pred HHHHHHhccC------chhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 939 SDILKCLGDN------KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 939 ~~il~~l~D~------K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
..++..+.++ -..|++-+++.+..|.....-++-+.++-..|+
T Consensus 84 ~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~~~~~~~~~y~~Lk 132 (143)
T d1mhqa_ 84 NELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (143)
T ss_dssp HHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 8888777653 356999999999999887753333333334343
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.64 E-value=0.65 Score=47.25 Aligned_cols=99 Identities=14% Similarity=0.254 Sum_probs=77.1
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
.+.+.||-.=.| |=.+|+. ++.+.-|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+
T Consensus 14 ~l~~~dw~~ile----icD~In~-----~~~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl 84 (151)
T d1juqa_ 14 SNRQEDWEYIIG----FCDQINK-----ELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFL 84 (151)
T ss_dssp TCSSCCHHHHHH----HHHHHHH-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHH
T ss_pred CCCCcCHHHHHH----HHHHHhc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHH
Confidence 356789954333 3333332 233346899999999999999999999999999999999999876 56688
Q ss_pred HHHHHHhccC------chhHHHHHHHHHHHHHHhcc
Q 000166 939 SDILKCLGDN------KKHMRECTLTVLDAWLAAVH 968 (1974)
Q Consensus 939 ~~il~~l~D~------K~~vR~aa~~alda~~~~~g 968 (1974)
..+...+.++ ...|++-+++.+..|.....
T Consensus 85 ~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~ 120 (151)
T d1juqa_ 85 NELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 120 (151)
T ss_dssp HHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHcc
Confidence 8888877653 34699999999999988764
|
| >d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Tom1 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.89 E-value=0.79 Score=46.65 Aligned_cols=111 Identities=21% Similarity=0.337 Sum_probs=77.5
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-chhHhHHHHHHHHHHHHHHhcChhHHhh--hhhh
Q 000166 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1974)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1974)
.+...||..=.|=- ..|+. ++.+.-|.+++|++||. ..|.+++..||.++..+..=.|+.|... .+-|
T Consensus 24 ~l~~~dw~~il~ic----D~In~-----~~~~~k~a~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh~evas~~F 94 (153)
T d1elka_ 24 SLQSEDWALNMEIC----DIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDF 94 (153)
T ss_dssp TCSSCCHHHHHHHH----HHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHH
T ss_pred CCCcccHHHHHHHH----HHHhC-----CCcCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHH
Confidence 35678997633322 23321 23334789999999995 5699999999999999999999999765 5567
Q ss_pred hHHHHH-Hhcc---CchhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000166 938 LSDILK-CLGD---NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1974)
Q Consensus 938 ~~~il~-~l~D---~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1974)
+-.++. .+.. ....|++-+++.+..|.....-++=++.|.+..
T Consensus 95 l~~ll~~~~~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~i~~~y 141 (153)
T d1elka_ 95 VESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIY 141 (153)
T ss_dssp HHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHhcCCccchHHHHHH
Confidence 776543 2222 223599999999999998875444445554444
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.97 E-value=1.6 Score=43.88 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=72.6
Q ss_pred hhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000166 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1974)
Q Consensus 293 ~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~ 370 (1974)
.+.+.+|.-= -++-.++. -.+..=.+.+++|+++|...|.+++..|+..++.+.+-=|+.|... .+-++..
T Consensus 20 ~l~~~dw~~i----leicD~I~---~~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~ 92 (145)
T d1ujka_ 20 LNKELDWASI----NGFCEQLN---EDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNE 92 (145)
T ss_dssp TCSSCCHHHH----HHHHHHHT---SSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHH
T ss_pred CCCCcCHHHH----HHHHHHHh---CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Confidence 3566888432 22222222 2233346889999999999999999999999999999999999766 5667777
Q ss_pred HHHHhccC------CHHHHHHHHHHHHHHHHh
Q 000166 371 LLEKLKEK------KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 371 lLeklKEK------K~~V~eA~~~aLda~~~~ 396 (1974)
|...++.| ...|++-+.+.+..|+..
T Consensus 93 L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~ 124 (145)
T d1ujka_ 93 LIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 124 (145)
T ss_dssp HHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 77777653 447899999999999875
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=84.76 E-value=0.7 Score=50.31 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=69.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000166 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1974)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1974)
.|..-+.|++|.+|..+.+.+ | ...|..-++|.+..|-..++ ..+|
T Consensus 118 ~L~~Ll~D~d~~VR~~aa~~~------------~------~~~L~~L~~D~d~~VR~~aA-------~~~~--------- 163 (233)
T d1lrva_ 118 QLEQMAADRDYLVRAYVVQRI------------P------PGRLFRFMRDEDRQVRKLVA-------KRLP--------- 163 (233)
T ss_dssp GGGGGTTCSSHHHHHHHHHHS------------C------GGGGGGTTTCSCHHHHHHHH-------HHSC---------
T ss_pred HHHHHhcCCCHHHHHHHHhcc------------c------hhHHHHHhcCCCHHHHHHHH-------HhcC---------
Confidence 344557899999998887531 1 12333445777776655443 3334
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhh
Q 000166 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1974)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p 1016 (1974)
.+.++..+.|.-+.||.++...|. - +.+...+.++ ++..|..+.. .+ -..
T Consensus 164 -~~~L~~l~~D~d~~VR~~aa~~L~-------~----~~L~~l~~D~--d~~VR~aaae----~~------------~~~ 213 (233)
T d1lrva_ 164 -EESLGLMTQDPEPEVRRIVASRLR-------G----DDLLELLHDP--DWTVRLAAVE----HA------------SLE 213 (233)
T ss_dssp -GGGGGGSTTCSSHHHHHHHHHHCC-------G----GGGGGGGGCS--SHHHHHHHHH----HS------------CHH
T ss_pred -HHHHHHHccCCCHHHHHHHHHhcC-------c----HHHHHHHhCC--CHHHHHHHHH----hc------------cHH
Confidence 244566788999999988876542 1 2223333443 5667766542 21 123
Q ss_pred HhhhccCCChHHHHHHHH
Q 000166 1017 ASIAMTDKSSDVRKAAEA 1034 (1974)
Q Consensus 1017 ~~~~L~Dr~~dVRkaA~~ 1034 (1974)
++..|.|.+++||.+|.+
T Consensus 214 ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 214 ALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHHCCCCCHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHH
Confidence 556788999999988753
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=83.96 E-value=1.8 Score=43.38 Aligned_cols=96 Identities=9% Similarity=0.082 Sum_probs=70.5
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+. -.+..=.+.+++|+++|.+.|.+++..|+..++.+.+-=|..|... .+-++..|
T Consensus 18 ~~~~dw~~il~icD~I~-------~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l 90 (145)
T d1dvpa1 18 RLEPDWPSILLICDEIN-------QKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF 90 (145)
T ss_dssp CSSCCHHHHHHHHHHHH-------TTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh-------CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHH
Confidence 45677865444333332 1233456899999999999999999999999999999999999866 34555555
Q ss_pred HHHhccC-CHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKEK-KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKEK-K~~V~eA~~~aLda~~~~ 396 (1974)
..-++.. -..|++-+.+.+..|...
T Consensus 91 ~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (145)
T d1dvpa1 91 SSFLESTPHENVRQKMLELVQTWAYA 116 (145)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 5444333 447899999999999875
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.21 E-value=1.9 Score=43.68 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=74.0
Q ss_pred hhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000166 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1974)
Q Consensus 293 ~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~ 370 (1974)
.+.+.+|.-=.|.-|.+. +. +..--+.+++|+++|...|.+++..|+..++.+.+--|+.|... .+-++..
T Consensus 14 ~l~~~dw~~ileicD~In---~~----~~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~ 86 (151)
T d1juqa_ 14 SNRQEDWEYIIGFCDQIN---KE----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE 86 (151)
T ss_dssp TCSSCCHHHHHHHHHHHH---HS----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHh---cC----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHH
Confidence 466788865444444332 22 12246899999999999999999999999999999999999877 4567777
Q ss_pred HHHHhccC------CHHHHHHHHHHHHHHHHh
Q 000166 371 LLEKLKEK------KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 371 lLeklKEK------K~~V~eA~~~aLda~~~~ 396 (1974)
|..-++.+ ...|.+-+.+.+..|+..
T Consensus 87 l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~ 118 (151)
T d1juqa_ 87 LIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 118 (151)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccCCCCcccHHHHHHHHHHHHHHHHH
Confidence 77766654 346999999999999875
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.98 E-value=64 Score=39.76 Aligned_cols=181 Identities=12% Similarity=0.094 Sum_probs=107.7
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcc-----------cCCCCCCccchHHHHhhhccchh-----HhHHHHHHHHHHH
Q 000166 858 LVKSLESPDWKVRLESIEAVNKILEEAN-----------KRIQPAGTGELFGGLRGRLYDSN-----KNLVMATLITLGA 921 (1974)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~an-----------krI~p~~~geL~~aLk~Rl~DsN-----k~lv~~al~ii~~ 921 (1974)
++.-+.|.+=.+|..|..++..+++... ..+.|.. .+++..|-..+.+.+ ..+....+++++.
T Consensus 501 l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l-~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ 579 (959)
T d1wa5c_ 501 LATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFR 579 (959)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHH
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhH-HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHH
Confidence 4445556666677888888887774211 1234443 556666655554433 3333457888999
Q ss_pred HHHhcChhHHhhhhhhhHHHHHHhc---c--CchhHHHHHHHHHHHHHHhccchh-------hhHHHHHHHhcccCCcch
Q 000166 922 VASAMGPAVEKSSKGVLSDILKCLG---D--NKKHMRECTLTVLDAWLAAVHLDK-------MVPYVTTALTDAKLGAEG 989 (1974)
Q Consensus 922 lA~amG~~~~k~~k~l~~~il~~l~---D--~K~~vR~aa~~alda~~~~~gl~~-------~~~~i~~~L~~~~~~p~~ 989 (1974)
+..-++..+.+|...+++.+...+. + .+...+..+.+++.......|-+. ++|.+...+.+. ....
T Consensus 580 ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~--~~~~ 657 (959)
T d1wa5c_ 580 VLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED--IQEF 657 (959)
T ss_dssp HHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT--CTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhcc--chhH
Confidence 9999999999998887777766542 2 456788899999999887765332 233444444432 2345
Q ss_pred HHHHHHHHHHHhccCCC-CcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHH
Q 000166 990 RKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 990 R~e~l~wL~~~l~~~~~-~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
..+++..+.-.+...+. .+....++.+++....+...+.......++..++.
T Consensus 658 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 710 (959)
T d1wa5c_ 658 IPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIK 710 (959)
T ss_dssp HHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Confidence 66666665555444443 34556666676654333333444444555554443
|