Citrus Sinensis ID: 000167
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1972 | 2.2.26 [Sep-21-2011] | |||||||
| Q94FN2 | 1978 | Protein MOR1 OS=Arabidops | yes | no | 0.991 | 0.988 | 0.769 | 0.0 | |
| Q5N749 | 1997 | Protein MOR1 OS=Oryza sat | yes | no | 0.986 | 0.973 | 0.719 | 0.0 | |
| Q14008 | 2032 | Cytoskeleton-associated p | yes | no | 0.705 | 0.685 | 0.306 | 1e-177 | |
| A2AGT5 | 2032 | Cytoskeleton-associated p | yes | no | 0.710 | 0.689 | 0.298 | 1e-171 | |
| Q1ZXQ8 | 2013 | Centrosomal protein 224 O | yes | no | 0.493 | 0.483 | 0.265 | 9e-96 | |
| O94534 | 809 | Spindle pole body compone | yes | no | 0.255 | 0.621 | 0.283 | 6e-47 | |
| Q09933 | 882 | Phosphoprotein p93 OS=Sch | no | no | 0.241 | 0.539 | 0.247 | 1e-31 | |
| P46675 | 888 | Protein STU2 OS=Saccharom | yes | no | 0.326 | 0.724 | 0.251 | 7e-30 | |
| G5EEM5 | 1415 | Zygote defective protein | yes | no | 0.112 | 0.156 | 0.288 | 3e-17 | |
| Q2UCC9 | 1184 | Protein stu1 OS=Aspergill | no | no | 0.148 | 0.246 | 0.226 | 0.0002 |
| >sp|Q94FN2|MOR1_ARATH Protein MOR1 OS=Arabidopsis thaliana GN=MOR1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 3056 bits (7922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1529/1987 (76%), Positives = 1719/1987 (86%), Gaps = 31/1987 (1%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +A AS K G KKDGS + E SK E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK +K+ KS SNG K GNR SR +PTKG+ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1615
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1616 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1675
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1676 DLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1735
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT TIG
Sbjct: 1736 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIG 1795
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1796 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1855
Query: 1855 L---DNRIGGAIASKVLPPENPLSD-------QRNERFGVTSGTLDAIRERMKSMQLAAA 1904
L I + V P NP SD N GV +GTLDAIRERMK+MQLA++
Sbjct: 1856 LALPSPDIPSLSSLDVKPLMNPRSDLYTDDIRASNMNPGVMTGTLDAIRERMKNMQLASS 1915
Query: 1905 AGNPDPGNRPLINMNDNVNNGLSSQSRSSDRASVEN-PAQGSVLPMDEKALSGLQARMER 1963
+P ++PL+ NDN++ ++ QS + E VLPMDEKALSGLQARMER
Sbjct: 1916 ----EPVSKPLMPTNDNLS--MNQQSVPPSQMGQETVHTHPVVLPMDEKALSGLQARMER 1969
Query: 1964 LKSGTIE 1970
LK G++E
Sbjct: 1970 LKGGSLE 1976
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Microtubule-binding protein that is essential for cortical microtubules organization and function. Essential for maintaining the interphase cortical array and for correct morphogenesis. Promotes rapid growth and shrinkage of microtubules and suppresses the pausing of interphase microtubules. Regulates the structure and function of microtubule arrays during mitosis and cytokinesis. Probably not required for cellulose microfibrils alignment in roots. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5N749|MOR1_ORYSJ Protein MOR1 OS=Oryza sativa subsp. japonica GN=MOR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2866 bits (7430), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1455/2021 (71%), Positives = 1699/2021 (84%), Gaps = 76/2021 (3%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE GPLFKKTV
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFKKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDAL+A+ +AADADA RYAKEVCDAI AKCLTGRPKTVEKAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALLAFQRAADADASRYAKEVCDAIVAKCLTGRPKTVEKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEA +VFL+ MEKA+KNKVAKAVVPAIDVMFQALSEFGAK++PPK+ILKMLPELFDH D
Sbjct: 123 ELEAAEVFLESMEKAVKNKVAKAVVPAIDVMFQALSEFGAKVVPPKKILKMLPELFDHPD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRASSKGLTLELCRWIGK+PVK ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASSKGLTLELCRWIGKEPVKAILFEKMRDTMKKELEAELANVSGIAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
+KEL +E++ E G SEE+ + P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 EKELEEEVVPEAAGTNNSEEAVPEAPMEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
R+DAVAELTKLASTK+IAPGDF E+CRTLKKLITDVN+AV+VEA QAIGNLA+GLRTHFS
Sbjct: 303 RRDAVAELTKLASTKKIAPGDFHEICRTLKKLITDVNLAVSVEATQAIGNLAKGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
G+SR LLPVLLEKLKEKKPT+ E+L+QTLQAMHK+GC+ L+DV+EDV+ +VKNKVPLVRS
Sbjct: 363 GNSRVLLPVLLEKLKEKKPTMTEALSQTLQAMHKSGCITLLDVIEDVRVAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
LTLNWV FCIETS+KA VLK+HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PL
Sbjct: 423 LTLNWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLS+MI GS D +GT +A +G + E +SS +R+SAASM
Sbjct: 483 ERSLEKLDDVRKKKLSDMI-GSASDTTSGTVAA--SNTGVGTSAREVMDSSSMRRSAASM 539
Query: 542 LSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAP--EDVEPSEMSLEEIESRL 598
LSGK+PV A PA+KK GP K +AKK G Q SK + AP EDVEPSEMSLEEIE +L
Sbjct: 540 LSGKKPVQAVPATKKSGPAKSATAKKTDGGPQ--SKASAAPVIEDVEPSEMSLEEIEEKL 597
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
S++ ++T+ QLKS VWKERLEAIS L+Q+VE++ LD+S E+LVRL+C +PGWSEKNVQ
Sbjct: 598 SSVVKSETISQLKSTVWKERLEAISMLKQEVESLTELDKSAELLVRLLCAVPGWSEKNVQ 657
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQVIEV Y+A+T +FPK+CVVLCLLGISERVADIKTR HAMKCLT F EAVGPGF+
Sbjct: 658 VQQQVIEVSTYIASTVNRFPKRCVVLCLLGISERVADIKTRGHAMKCLTAFCEAVGPGFV 717
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMVSAVEDFG+S+LKLKD IDFCKD GLQSSAAATRNA
Sbjct: 718 FERLYKIMKEHKNPKVLSEGILWMVSAVEDFGISNLKLKDTIDFCKDIGLQSSAAATRNA 777
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV-VPKKTVRASESTSSV 837
TIKL+G LHKFVGPDIKGFL+DVKPALLS LDAEYEKNPFEGT PK+TVRA+++ SS
Sbjct: 778 TIKLIGVLHKFVGPDIKGFLSDVKPALLSTLDAEYEKNPFEGTASAPKRTVRAADAVSSA 837
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSG SDGLPREDIS K TPTL+K+L SPDWK+RLESI+AV+KI+EEA+KRIQP GT ELF
Sbjct: 838 SSGTSDGLPREDISAKITPTLLKNLGSPDWKLRLESIDAVSKIVEEAHKRIQPTGTVELF 897
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
LR RLYDSNKNLVMATL T+G +ASAMGPAVEKSSKG+L+D+LKCLGDNKKHMRECTL
Sbjct: 898 TALRARLYDSNKNLVMATLSTIGGLASAMGPAVEKSSKGILADVLKCLGDNKKHMRECTL 957
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T LD W+AA LDKMVPY+T L D K G+EGRKDLFDWLSK + +S +A LLKP+
Sbjct: 958 TALDLWVAAAQLDKMVPYITVTLGDQKTGSEGRKDLFDWLSKHASNMSDPSEALPLLKPS 1017
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ ++ DKSS+VRKAAE+ + EIL+ GQ+ + KNLKD+ P LA++ ER+KL+ +
Sbjct: 1018 ASSLMDKSSEVRKAAESFMNEILKICGQDVVAKNLKDLPSPTLAIVAERLKLSTVHEGFS 1077
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
SM SK+ SK K N + ++A+S R IP + + +++S QD ++Q
Sbjct: 1078 DSVKMVTTSMSLPSKAGSKNNKHGPNDRGSNVSKAVSQRGIPARSSV--TMISSQD-SIQ 1134
Query: 1128 SQALLNVKDSNKEDRERMV-VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKK 1186
SQAL N+KDSNKE+RER V VR+FKFE+PR EQI EL+ ++ ++FRED+ RL ++DFK+
Sbjct: 1135 SQALFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKR 1194
Query: 1187 QVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEG 1246
Q+DG+E+LQKALPS RK++IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D+
Sbjct: 1195 QIDGIELLQKALPSSRKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQS 1254
Query: 1247 YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNR 1306
Y LTE+EAA+FLPCL+EKSGHNIEKVREKM EL KQ+VN YS K LPYILEGLRSKNNR
Sbjct: 1255 YMLTEAEAAIFLPCLMEKSGHNIEKVREKMGELIKQMVNIYSLPKLLPYILEGLRSKNNR 1314
Query: 1307 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
TRIECVD++G+ +DHHG E+SG LK+L VA+LTAERDGEIRKAALNTLAT YK LG+D+
Sbjct: 1315 TRIECVDIIGYFMDHHGTEVSGLLKNLPSVAALTAERDGEIRKAALNTLATAYKNLGDDV 1374
Query: 1367 WRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD-V 1425
WRYVGKL+DAQ+SMLDDRFKWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+ V
Sbjct: 1375 WRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGEAV 1434
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVS-GPTDWNEALDIISFGSPEQSVEGMK 1484
S+S++G + R N+G+S+ H ++PR +A+ + GP DW EALDI++ G PEQSVEGMK
Sbjct: 1435 SRSMAGSMISRENFGYSDAH----MVPRQMATATPGPADWREALDIVALGLPEQSVEGMK 1490
Query: 1485 VVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLM 1544
V+CHEL QA DPE SV+D+L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTLM
Sbjct: 1491 VICHELTQAV-DPESSVLDDLIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTLM 1549
Query: 1545 QTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRT 1604
QTFQ KRLA+AV+E TLD+LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNA+RT
Sbjct: 1550 QTFQIKRLAHAVKEGTLDNLITELLLWLLDERVPLMDDGSQLLKALNVLMLKILDNAERT 1609
Query: 1605 SSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDR 1664
SSFVVLINLLRPLDPSRWPSP ES A +NQ+FSDLVVKCLIKLTKVLQSTIY+VDLDR
Sbjct: 1610 SSFVVLINLLRPLDPSRWPSPTPPESLAVKNQKFSDLVVKCLIKLTKVLQSTIYEVDLDR 1669
Query: 1665 ILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQ 1724
ILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPID +PQ
Sbjct: 1670 ILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDAEPQ 1729
Query: 1725 PIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKK 1784
PIILAYIDLNL+TLAAARMLT +G GQTHWGD+ +NNP +T+S DAQLKQELAA+FKK
Sbjct: 1730 PIILAYIDLNLQTLAAARMLTPSGTMGQTHWGDAGSNNPNPSTHSTDAQLKQELAAVFKK 1789
Query: 1785 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS 1844
IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS
Sbjct: 1790 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSS 1849
Query: 1845 VPMAT-------------PPPA---ALDN----------------RIGGAIASKVLPPEN 1872
+P++T P P +++N R G I +++
Sbjct: 1850 LPLSTPPPIAPIPSPKFAPSPVHTKSINNKTDCNEDDAGGDTHPFRGQGEIDNRL----- 1904
Query: 1873 PLSDQRNERFGVTSGTLDAIRERMKSMQLAAAAGNPDPGN-RPLINMNDNVNNGLSSQSR 1931
++ + +R+ +SGTLDA+RERMKS+Q AA N D RPL +MN N +G
Sbjct: 1905 QTTNLQTDRYQ-SSGTLDALRERMKSIQAAAVGANFDGVQARPLPSMNGNTLHG------ 1957
Query: 1932 SSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1972
R + Q + PMDE+ALSGLQARMERLKSG++EPL
Sbjct: 1958 -GTRLDADPQTQNIIPPMDERALSGLQARMERLKSGSMEPL 1997
|
Microtubule-associated protein that is essential for cortical microtubules organization and function. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q14008|CKAP5_HUMAN Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 622 bits (1605), Expect = e-177, Method: Compositional matrix adjust.
Identities = 463/1511 (30%), Positives = 761/1511 (50%), Gaps = 119/1511 (7%)
Query: 13 KLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKA 72
KLP + + HK WK R + + I D K + L KK V DSNA VQ K
Sbjct: 9 KLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKG 68
Query: 73 LDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLD 131
L+A + Y++ A AG+ EV + +K + K E + ++++E+E + +
Sbjct: 69 LEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQE 127
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGL 191
+ K + NK K +V I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K +
Sbjct: 128 ELLKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLI 187
Query: 192 TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELI 250
+E+ RWI +D ++ L + + KELE E V + +A RPTR +R++Q+ E E
Sbjct: 188 AVEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQ 245
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ +
Sbjct: 246 QSAGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALESVE 304
Query: 311 KLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369
L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F + ++P
Sbjct: 305 VLIKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVP 364
Query: 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT- 428
+LEK KEKKP V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 365 TILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIAR 422
Query: 429 ---FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482
C ++ ++LK P C ++ +ND PEVRDAAF L K VG + +
Sbjct: 423 SFRHCTASTLPKSLLK------PFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVN 476
Query: 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR---KSAA 539
+ +D ++ +K+ E S +V+ G + A + F ++AA
Sbjct: 477 PFLADVDKLKLDKIKE-------------CSEKVELIHGKKAGLAADKKEFKPLPGRTAA 523
Query: 540 SMLSGKR-----------PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDV 584
S +G + P+ APA+K GGP K A G+G T K E E V
Sbjct: 524 SGAAGDKDTKDISAPKPGPLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIV 583
Query: 585 EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644
EP E+S+E E + +++P + L S+ WKERL + ++ VE + + + LVR
Sbjct: 584 EP-ELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVR 642
Query: 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMK 704
++ PGW E N QV Q + ++ +A F K + L G+ +++ D+K +A +
Sbjct: 643 MLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGNNAKE 701
Query: 705 CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764
+T +EA + E++ + KNPK SE + W+ +A+++FG S L +K I K
Sbjct: 702 AMTAIAEACMLPWTAEQVVSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK 761
Query: 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 824
T L ++ A R A I LLG ++ +VGP ++ F D KPALLS +DAE+EK +G P
Sbjct: 762 -TALAATNPAVRTAAITLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEK--MQGQSPP 818
Query: 825 KKTVRASESTSSVSSGGSDG-------------LPREDISGKFTPTLVKSLESPDWKVRL 871
T S+ ++S + G DG LPR +IS K T LV + +WK+R
Sbjct: 819 APTRGISKHSTSGTDEGEDGDEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKIRK 878
Query: 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931
E ++ V I+ +A K IQP GEL L+GRL DSNK LV TL L +A AMGP ++
Sbjct: 879 EGLDEVAGIINDA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIK 936
Query: 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRK 991
+ K + I+ LGD+K ++R L ++AW + + + + K R+
Sbjct: 937 QHVKNLGIPIITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQ 996
Query: 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
+L WL+++L L P L P + + D++ DVRK A+ + + G E + K
Sbjct: 997 ELLGWLAEKLPTLRSTPTDLILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAK 1056
Query: 1051 ---NLKDIQGPALALILERIKLN-----------------GASQVSMGPTSK------SS 1084
LK + +LE+ K+N G++ P S SS
Sbjct: 1057 ATGKLKPTSKDQVLAMLEKAKVNMPAKPAPPTKATSKPMGGSAPAKFQPASAPAEDCISS 1116
Query: 1085 SKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER 1144
S PK G +SS+ +G + S S+++ +S + V + KE R +
Sbjct: 1117 STEPKPDPKKAKAPG---LSSKAKSAQGKKMPSKTSLKEDEDKSGPIFIVVPNGKEQRMK 1173
Query: 1145 ----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200
+ V ++ F PR E I++L+ M + L + +DF+ L ++ L S
Sbjct: 1174 DEKGLKVLKWNFTTPRDEYIEQLKTQMSSCVAKWLQDEMFHSDFQHHNKALAVMVDHLES 1233
Query: 1201 IRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPC 1260
++ +I LD++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+EA+ F+P
Sbjct: 1234 EKEGVIGCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPY 1293
Query: 1261 LVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLID 1320
LV K G + +R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++ +G L++
Sbjct: 1294 LVVKVGEPKDVIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLVE 1353
Query: 1321 HHGAEISGQL--KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQK 1378
+G + K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G L++
Sbjct: 1354 SYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDM 1413
Query: 1379 SMLDDRFKWKVREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQSGDVSQS 1428
SML++R K + K+ E KP A+ LR+ E+ S Q+ +S
Sbjct: 1414 SMLEERIKRSAKRPSAAPIKQVEEKPQRAQNISSNANMLRKGPAEDMSSKLNQARSMSGH 1473
Query: 1429 VSGPTLMRRNY 1439
++RR +
Sbjct: 1474 PEAAQMVRREF 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Homo sapiens (taxid: 9606) |
| >sp|A2AGT5|CKAP5_MOUSE Cytoskeleton-associated protein 5 OS=Mus musculus GN=Ckap5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 604 bits (1558), Expect = e-171, Method: Compositional matrix adjust.
Identities = 448/1501 (29%), Positives = 753/1501 (50%), Gaps = 99/1501 (6%)
Query: 13 KLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKA 72
KLP + + HK WK R + + I D K + L KK V DSNA VQ K
Sbjct: 9 KLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKG 68
Query: 73 LDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLD 131
L+A + Y++ A AG+ EV + +K + K E + +++VE+E + +
Sbjct: 69 LEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQE 127
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGL 191
+ K + NK K +V I+ + +ALSEFG+KII K I+K+LP+LF+ +D+ VR +K
Sbjct: 128 ELLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLF 187
Query: 192 TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELI 250
+E+ RW +D VK L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 188 AIEIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQ 245
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
G D P++D YEL+D V+IL+ L K F++ ++A KW ERK+A+ +
Sbjct: 246 QSAGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDKIEAKKWQERKEALEAVE 304
Query: 311 KLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369
L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F + ++P
Sbjct: 305 VLVKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVP 364
Query: 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT- 428
+LEK KEKKP V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 365 TILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIAR 422
Query: 429 ---FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482
C ++ ++LK P C ++ +ND PEVRDAAF L K VG + +
Sbjct: 423 SFRHCTSSTLPKSLLK------PFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKSVN 476
Query: 483 RSIEKLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK 536
+ +D ++ +++ E ++ G +AT ++ +P A+ + K
Sbjct: 477 PFLADVDKLKLDRIKECSEKVELVHGKKSGLATEKKESK------PLPGRAAASGAAGDK 530
Query: 537 SAASMLSGKRP--VSAAPASKKGGPVKPSAKK----DGSGKQETSKLTEAPEDVEPSEMS 590
+SG +P + P +K GGP K S + K E E VEP E+S
Sbjct: 531 DTKD-VSGPKPGPLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGLETKEIVEP-ELS 588
Query: 591 LEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP 650
+E E + +++P + L S+ WKERL + ++ VE ++ + + LV+++ P
Sbjct: 589 IEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMPCQALVKMLAKKP 648
Query: 651 GWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFS 710
GW E N QV Q + ++ +A F K + L G+ +++ D+K +A + +T +
Sbjct: 649 GWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIA 707
Query: 711 EAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS 770
EA + E++ + KNPK SE + W+ +A+++FG S L +K I K T L +
Sbjct: 708 EACMLPWTAEQVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKAFISNVK-TALAA 766
Query: 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830
+ A R + I LLG ++ +VGP ++ D KPALLS +DAE++K + P + + A
Sbjct: 767 TNPAVRTSAITLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGI-A 825
Query: 831 SESTSSVSSGGS------------DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878
STS+ G D LPR +IS K T LV + +WK+R E ++ V
Sbjct: 826 KHSTSATDEGEDGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNWKIRKEGLDEVA 885
Query: 879 KILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938
I+ EA K IQP GEL L+GRL DSNK LV TL L +A AMG + + K +
Sbjct: 886 GIINEA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGANIRQHVKNLG 943
Query: 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998
++ LGD+K ++R L ++AW + + + + K R++L WL+
Sbjct: 944 IPVITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLA 1003
Query: 999 KQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKD 1054
++L L P L P + + D++ DVRK A+ + + G E + K LK
Sbjct: 1004 EKLPTLRSTPTDLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKP 1063
Query: 1055 IQGPALALILERIKLNGASQVS---------MGPTSKSSSK-VPKSASNGVS-------- 1096
+ +LE+ K N S+ + MG ++ + ++ +P + VS
Sbjct: 1064 TSKDQVLAMLEKAKANMPSKPAAPAKAMSKPMGGSAPAKTQPIPAPVEDSVSSTIEAKPD 1123
Query: 1097 --KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER----MVVRRF 1150
K +SS+ +G + S ++++ +S + V + KE R R + V ++
Sbjct: 1124 LKKAKAPGVSSKAKSVQGKKVPSKTTLKEDDDKSGPIFIVVPNGKEQRMRDEKGLKVLKW 1183
Query: 1151 KFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLD 1210
F PR E I++L+ M + L + +DF+ L ++ L S + +I LD
Sbjct: 1184 NFTTPRDEYIEQLKTQMSTCVAKWLQDEMFHSDFQHHNKALAVMVDHLESEKDGVISCLD 1243
Query: 1211 ILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIE 1270
++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+EA+ F+P L+ K G +
Sbjct: 1244 LILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPYLILKVGEPKD 1303
Query: 1271 KVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQL 1330
+R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++ +G LI+ +G +
Sbjct: 1304 VIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLIESYGMNVCQPT 1363
Query: 1331 --KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWK 1388
K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G L++ SML++R K
Sbjct: 1364 PGKALKEIAIHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDMSMLEERIKRS 1423
Query: 1389 VREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRN 1438
+ K+ E KP + LR+ E+ S Q+ +S ++RR
Sbjct: 1424 AKRPSAAPVKQAEEKPQRTQNINSNANMLRKGPAEDMSSKLNQARSLSGHPEAAQMVRRE 1483
Query: 1439 Y 1439
+
Sbjct: 1484 F 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Mus musculus (taxid: 10090) |
| >sp|Q1ZXQ8|MTAA_DICDI Centrosomal protein 224 OS=Dictyostelium discoideum GN=mtaA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 275/1036 (26%), Positives = 510/1036 (49%), Gaps = 63/1036 (6%)
Query: 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
EDR+ HKNWK R +L + + E GP FKK +AD N Q++AL+ L
Sbjct: 12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPL 71
Query: 77 IAYLKAADADAGRYAKEVCDAIAAKCL-TGRPKTVEKAQAVFMLWVELEAVDVFLDVMEK 135
A++ D ++A + K + RP+ EK +L +E ++ + ++ + K
Sbjct: 72 SAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLK 130
Query: 136 AIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195
+ K ++ ++ + QAL FG K IP K ILK F+++D+ +R + L +E+
Sbjct: 131 GTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEI 190
Query: 196 CRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISEDV 254
RWIGK + ++ E + K L+ + + + A P + R+E K L S+ +
Sbjct: 191 YRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPAVPLKYTRSEAAKALANA--SKGI 247
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-TKLA 313
P +V EID Y L+ V+IL P S F+EG++A KW ER + + +L T L
Sbjct: 248 QAKP------EVVEEIDPYSLMTAVNIL-PKLTSEFYEGLQAKKWQERSEQMDKLVTILT 300
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373
+T +I DF+E+C+ LKK++ DVN+ + +A+ +IG LA LR F+ + + +LE
Sbjct: 301 NTPKIETADFSELCKALKKILADVNVMIVQKAVVSIGLLADSLRGGFTSYVKPFITPILE 360
Query: 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433
K KEKK +V +S+ T+ ++ ++L D+++++ ++++KVP ++ L ++ I
Sbjct: 361 KFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTATMQSKVPQIKQEVLVFICNSITN 419
Query: 434 SSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492
+ K A + KV K I ME LND +RD A AA+ +G R + + ++D ++
Sbjct: 420 TKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAFAALGGIIGERAMTPYLNQIDPIK 479
Query: 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552
K+ + + VAT + + + ++ SS S K+P +A
Sbjct: 480 AKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLPVSS----------SNKKPAAAT- 524
Query: 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL--GSLIPADTVGQL 610
S + + + P S ++I+++L ++ + + L
Sbjct: 525 -----------GNSKSSSTTTPTGRSSNSSPLPPPPSSSDDIKNKLIGAGIVNNEIIEGL 573
Query: 611 KSAVWKERLEAISSLRQQVEAV--QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 668
WK+RL+A+ + + V+ + +++ E +++L+C P E N QV + +
Sbjct: 574 GKTQWKDRLQAVDDILENVKGLTADSINGMSESIIQLLCDKPSLKESNFQVLSSIFSIFI 633
Query: 669 YLAATATKFP-KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
+ F ++C L E++ D+K + + + L + E++ P +F +Y+
Sbjct: 634 QCCKNDSNFTQQRCANSYLTTCIEKLTDVKLKEISSELLFSTGESITPHAVFTSIYQFTS 693
Query: 728 DHKNPKVLSEGILWMVSAVEDFGVSHL-----KLKDLIDFCKDTGLQSSAAATRNATIKL 782
+HKNPK++++ ++W+ A+++FG+ +LK L+D+ K L+S+ + + IKL
Sbjct: 694 NHKNPKIIADSLVWIQQAIDEFGIGCCSNGIQQLKPLLDYTKQC-LESTNPDVKKSAIKL 752
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842
L + +G + FL DVK + LD E++K + VP + + S
Sbjct: 753 LCTIKINIGATLTDFLGDVKKPTMEVLDREFQKIRDQKPPVPNRQWKGMPPPGSAPVQIE 812
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902
PR DIS K TP ++ +L +WK R ++++ + +I+ +AN++IQP G L L+
Sbjct: 813 --FPRVDISVKLTPAIITNLSDANWKTRSDALDEIERIIIDANRKIQPK-LGGLIPALKN 869
Query: 903 RLYDSNKNLVMATLITLGAVASAM-GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
RL D+N+ + TL +G ++ AM G + EK ++ ++ IL LGD+KK +R+ ++ ++
Sbjct: 870 RLTDNNQKCTITTLNIIGMLSQAMGGQSFEKHARLLIPGILLLLGDSKKPVRDAVISCMN 929
Query: 962 AWLAA-VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP---DAAHLLKPA 1017
+ + + D + + + A RK+ W +T + P + L K
Sbjct: 930 VIVQSDLGFDVFIGSLAAPMIQE--SAFTRKESLAWTIVNVTNMKAAPIPSEINTLAKGI 987
Query: 1018 SIAMTDKSSDVRKAAE 1033
+ DKS+++R A+
Sbjct: 988 ISCLQDKSAEIRSLAD 1003
|
Involved in regulation of microtubule dynamics. Regulates the interaction of microtubules tips with the centrosome and cell cortex. Dictyostelium discoideum (taxid: 44689) |
| >sp|O94534|ALP14_SCHPO Spindle pole body component alp14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (485), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 161/568 (28%), Positives = 263/568 (46%), Gaps = 65/568 (11%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRI---RELGPLF 57
MS++++ ++ KLP E R++HK WKVR A + + D DN L+
Sbjct: 1 MSQDQE--EDYSKLPLESRIVHKVWKVRLSAYEECSKSFSLSADGSDNCFELWNNQSELW 58
Query: 58 KKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCD-AIAAKCLTG-RPKTVEKAQA 115
K + DSN Q+ A +AY + +D A+E+ +I+ KCLT R T E A
Sbjct: 59 KSVLTDSNVAAQEAGTAAFVAYCRFSDPSHLLKAREISVLSISEKCLTSPRAGTRENALE 118
Query: 116 VFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPE 175
ML VE ++ ++ + ++ + K + + + + +FGAK+IP K I+ +
Sbjct: 119 ALMLLVEADSAAPVIESIIPSLSARSPKVIASNVAAIASLVEQFGAKVIPSKMIIPHISN 178
Query: 176 LFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235
LF H D+NVR + LT+ + RW G DP+K +LF+ +R KELE + P +
Sbjct: 179 LFGHADKNVRKEASRLTVNIYRWTG-DPLKDLLFKDLRPVQTKELESLFAEL--PTEPPK 235
Query: 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEI-----------DEYELVDPVDILTP 284
+ R L S+ P+ E+ + P + D+++LV+ VD+L P
Sbjct: 236 QTRF---------LKSQQPTSEPNVETQVEEQPALENEESEPEPSDDQFDLVEEVDVL-P 285
Query: 285 LEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAV 343
+ ++KW +RK+A+ +L + S +I DF + L K ++ D NI V +
Sbjct: 286 NVDPNLETLMASSKWKDRKEALDKLLPVLSQPKIKDNDFFNLVAILTKSVSKDANIMVVI 345
Query: 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403
A I +A+GLR++FS + + LLE+ KEKK V ESL+ + A+ L+ D
Sbjct: 346 NAAHCIQAMAKGLRSNFSKYASTSINALLERSKEKKANVIESLSSAMDAVLATSSLD--D 403
Query: 404 VVEDVKTSVKNKVPLVRSLTLNWVT------------FCIETSSKAAVLKVHKDYVPICM 451
+ E + + NK P ++S + + F ++T +KA V V + P
Sbjct: 404 LAELIASFAGNKNPQIKSSCFSLFSRSFSNMTSLPSKFTVDTCAKACVPGVSDTFEP--- 460
Query: 452 ECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511
VR AA L + K VG R + + + LDD+R++K+ T T
Sbjct: 461 ---------VRSAAAEALGVLMKLVGERAINQYLSPLDDIRKSKIRSF-------YETAT 504
Query: 512 SSARVQTSGGSVPSVEASESSFVRKSAA 539
A+ T V + ES V S A
Sbjct: 505 VKAKAPTKKSKVKPSKQEESKVVVPSNA 532
|
Required for bipolar spindle formation and proper chromosome segregation. Has a role in connecting the kinetochores and the plus end of pole to chromosome microtubules. Also required for the activation of the spindle checkpoint pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q09933|DIS1_SCHPO Phosphoprotein p93 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dis1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 129/521 (24%), Positives = 233/521 (44%), Gaps = 45/521 (8%)
Query: 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIREL---GPLFKKTVADSNAPVQDKALDA 75
++ K+WKVR EA L + D D + L+K+ + DSN P Q+ A+ +
Sbjct: 13 QIFDKSWKVRFEAYESLLHALNRALDDSDVCFQPWIHDPALWKQGLCDSNVPTQEHAVKS 72
Query: 76 LIAYLKAADADAGRYAKE-VCDAIAAKCLTGRPKTVEKA--QAVFMLWVELEAVDVFLDV 132
L +L + AK V + KCL +++ A QA+ +L + +A+D L+
Sbjct: 73 LRCFLDKSRQKGVNSAKSFVVAPLLEKCLPSPRQSIRDASHQALLIL-AKSDALDYVLEG 131
Query: 133 MEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ A + K K V +I + L FG + P K++P LF D+N+R + L+
Sbjct: 132 LFSAARVKHPKQAVASIKELNSLLENFGIPALSPIPFYKLIPTLFAQSDKNIRQEASNLS 191
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV------------------------S 228
+ L W+G + KT +F +++ +LE NV S
Sbjct: 192 ITLYAWVG-NAFKTHVFPQLKQIQVSDLEASFQNVTSRTTTGGHISNSLNTQEVVLPSFS 250
Query: 229 GTARPTRKIRAEQDKELG--QELISEDVGPG-----PSEESTADVPPEIDEYELV---DP 278
A+P + ++ + Q S P PS+ S + + + + P
Sbjct: 251 SNAKPKPHLSSKSSSQGNTLQRSTSSFSTPNRKVSQPSDFSASPSRSIVSPAKNIVGSTP 310
Query: 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVN 338
VD+L+ L F + + KW +RK+A+ + + S GD++E+ R + K + D N
Sbjct: 311 VDVLSKLTPE-FHTALSSPKWKDRKEALESMVPVCSNPVYQEGDYSELLRVIAKSLKDAN 369
Query: 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398
+ V A + ++A+ LR F + +LP L ++ KE+K ++ SL A+ ++
Sbjct: 370 VVVVGVAALLLTHIAKALRKGFLPYTGIVLPSLFDRFKERKSSLVHSLLDAANAIFESCG 429
Query: 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458
LN D++++ +K+K P V++ TL W+ C++ + + +C+ +ND
Sbjct: 430 LN--DIMDETLEFLKHKNPQVKTETLRWLNRCLQLTDVCPPRASLETLCSLCVTLINDTF 487
Query: 459 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499
VR A +VLA + + L + I LD + K+ E+
Sbjct: 488 EPVRMATTNVLATLVQIFSQPVLSKYIVGLDPKKLPKILEL 528
|
Has a role in sister chromatid separation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P46675|STU2_YEAST Protein STU2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STU2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 190/754 (25%), Positives = 352/754 (46%), Gaps = 111/754 (14%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALC-DSITD-PKDNRIRELG---P 55
MS EE++ + LP E+RL +K WK R EA +L L +S+ D +D+ I+
Sbjct: 1 MSGEEEV--DYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPT 58
Query: 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVC------DAIAAKCLTG-RPK 108
LF + + DSN Q++A+ AL + + A + + + A + + K LT R
Sbjct: 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT 118
Query: 109 TVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI 163
T ++ + + L ++V++ + EK K+ K + A + +++ ++ FG
Sbjct: 119 TKTQSMSCILSLCGLDTSITQSVELVIPFFEK----KLPKLIAAAANCVYELMAAFGLTN 174
Query: 164 IPPK----RILKMLPELFDHQDQNVRASSKGLTLELCRWIGK--DPVKTILFEKMRDTMK 217
+ + +LK +P+L H D+NVR+ + L +E+ + G D ++ ILF+K++
Sbjct: 175 VNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQV 234
Query: 218 KELEVELVNVSGTARPTRKI----RAEQDKELGQE--------LISEDVGPGPSEES--- 262
K+L V ++ + + E +K+ QE ++S D G ++
Sbjct: 235 KDLHKLFAKVGDEPSSSKMLFEWEKRELEKKRSQEEEARKRKSILSNDEGEYQIDKDGDT 294
Query: 263 ----TADVPP-------EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-- 309
D+PP +ID + ++ IL L K F E + ++KW +R +A+ E
Sbjct: 295 LMGMETDMPPSKQQSGVQIDTFSMLPEETILDKLPK-DFQERITSSKWKDRVEALEEFWD 353
Query: 310 TKLASTKRI--APGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRT-HFSGSS- 364
+ L+ TK++ +++ + +I D NI A Q++ + L+T FS
Sbjct: 354 SVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 413
Query: 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLV 419
+ LL++ KEKKP+V E++ + L + K A D+++D+ +K+K P +
Sbjct: 414 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQI 473
Query: 420 R--SLTLNWVTFCIETSSKAAVLKVHKD-YVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476
R L + E + + + KD VPI ++ +ND P +R F A + K
Sbjct: 474 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 533
Query: 477 GMRPLERSIEKLDDVRRNKLSEMIAG-SGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
GM +++E LD+++R K+ E + +A+G++ + ++T+ + P E+ F+
Sbjct: 534 GMNTFVKTLEHLDNLKRKKIEETVKTLPNFSIASGSTHSTIETNKQTGP----MENKFLL 589
Query: 536 KSAASMLSGKRPVSAAP----ASKKGGPV-------KPS--AKKDGSGKQETSKLTEAPE 582
K +S+L KR V+++P K P+ KPS A + S TSK P+
Sbjct: 590 K-KSSVLPSKR-VASSPLRNDNKSKVNPIGSVASASKPSMVAANNKSRVLLTSKSLATPK 647
Query: 583 DV-----EPSEMSLEEIESRLGSLIPADTVGQLKSAVW-KER---LEAISSLRQ-QVEAV 632
+V + +E +EE + RL L Q +W KER LE +++ ++E +
Sbjct: 648 NVVANSTDKNEKLIEEYKYRLQKL-------QNDEMIWTKERQSLLEKMNNTENYKIEMI 700
Query: 633 QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666
+ + E L L +EKN+Q++ + I+V
Sbjct: 701 KENEMLREQLKEAQSKL---NEKNIQLRSKEIDV 731
|
May play a role in the attachment, organization, and/or dynamics of microtubule ends at the spindle pole body. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|G5EEM5|ZYG9_CAEEL Zygote defective protein 9 OS=Caenorhabditis elegans GN=zyg-9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 10/232 (4%)
Query: 269 EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL--ASTKRIAPGDFTEV 326
E D ++ +D D+L+ + GF +++ KW ERK+A+ L +L A+ K ++ +
Sbjct: 286 EADPWDFLDAFDVLSKM-PDGFDTNIESKKWQERKEALEGLLQLITANPKLDPKANYGAL 344
Query: 327 CRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAES 385
L+K++ D NI VA A I +A GLRT F + + P++ EK KEKKPT+ +
Sbjct: 345 VERLQKVLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDP 404
Query: 386 LTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFC-IETSSKAAVLKVHK 444
L + A+ NL V E V ++ P +++ T ++ C ++ +S+ K K
Sbjct: 405 LVACIDAV--VATTNLEAVGEIVLAALGKPNPSIKTQTDLFLQRCFMKLNSQTMPKKTLK 462
Query: 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496
+P ++ D EVR+A+++ + A+ +++G +P S++ L D+ + L
Sbjct: 463 TLIPSLIKHSGDSDSEVREASYAAMGAMMRAIGEKP---SLQLLADIASDNL 511
|
Plays a major role in organizing microtubules and spindle poles during mitosis and meiosis in one-cell stage embryos. Required for default nucleus positioning in oocytes. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q2UCC9|STU1_ASPOR Protein stu1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=stu1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 139/336 (41%), Gaps = 44/336 (13%)
Query: 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGL----RTHF-SGSSRFLLPVLLEKLKEKKP 380
+ +L+ IT + A+ G+ + L + H S +R PVLLE+L + K
Sbjct: 46 IFESLRLAITSHHAALYAAGFSTFGHFLKRLFIQDQAHIVSAYARHFCPVLLERLGDHKE 105
Query: 381 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440
V Q + A ++ V +V + KN P + +L W++ S +L
Sbjct: 106 RVRAQAAQIFTDLWPAASADVEHYVLEVALTGKN--PKAKETSLIWLS---NMSRNHGLL 160
Query: 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL--DDVRRNKLSE 498
+ YVP + CL D VR A S + + + R +++ +VR++ ++
Sbjct: 161 --FRSYVPSVVSCLEDADSFVRHTAKSTVVELFQGAPARAKADLTKEMTAQNVRQSIVNA 218
Query: 499 MIAGSGGDVATGTSSARVQTSGGSVPSVE------ASESSFVRKSAASMLSGK--RPVSA 550
+ A G + + T+ R + P + AS + V + A+++S RP
Sbjct: 219 VYANIGLEDHSSTARPRSRVEPRYTPCTDSHPLRSASRAEVVHQQPAAVVSSAPLRPSKE 278
Query: 551 APASKKGGPVK--PSAKKDGSGK-----------------QETSKLTEAPEDVEPSEMSL 591
A + P+K P + K G+ + +S+ EAP+ + +E S
Sbjct: 279 ATPMVEPEPIKSRPGSSKSDKGRTIAAAPEAEKAPHMETARPSSQDGEAPQPLH-AETS- 336
Query: 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627
+++E L PA G+ W+ R + I+SLR+
Sbjct: 337 KQVEDLFRVLSPA-FEGRESEDNWRHREKYITSLRR 371
|
Microtubule binding protein that promotes the stabilization of dynamic microtubules. Required for mitotic spindle formation. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1972 | ||||||
| 255587410 | 1992 | microtubule associated protein xmap215, | 0.982 | 0.972 | 0.828 | 0.0 | |
| 224115548 | 2025 | microtubule organization protein [Populu | 1.0 | 0.973 | 0.827 | 0.0 | |
| 224061471 | 2036 | microtubule organization protein [Populu | 1.0 | 0.968 | 0.827 | 0.0 | |
| 356533943 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.997 | 0.967 | 0.803 | 0.0 | |
| 356574625 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.997 | 0.967 | 0.803 | 0.0 | |
| 19912731 | 2029 | microtubule bundling polypeptide TMBP200 | 0.997 | 0.969 | 0.775 | 0.0 | |
| 449434204 | 2005 | PREDICTED: protein MOR1-like [Cucumis sa | 0.987 | 0.971 | 0.774 | 0.0 | |
| 297823359 | 1980 | hypothetical protein ARALYDRAFT_482523 [ | 0.992 | 0.988 | 0.775 | 0.0 | |
| 30686489 | 1978 | microtubule organization 1 protein [Arab | 0.991 | 0.988 | 0.769 | 0.0 | |
| 413952123 | 1996 | hypothetical protein ZEAMMB73_280693 [Ze | 0.989 | 0.977 | 0.712 | 0.0 |
| >gi|255587410|ref|XP_002534264.1| microtubule associated protein xmap215, putative [Ricinus communis] gi|223525620|gb|EEF28119.1| microtubule associated protein xmap215, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3387 bits (8783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1680/2027 (82%), Positives = 1798/2027 (88%), Gaps = 90/2027 (4%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAA CDSITDPKD R+RE GPLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAAFCDSITDPKDPRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQASFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAVDVFLD MEKAIKNKVAKAVVPAIDVMFQALSEFGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVDVFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE GPG SEE+ AD P EIDEYELVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEPEAVSEVAGPGQSEEAAADAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
S SSRFLLPVLLEKLKEKKP + ESL QTLQA+HK+GCL+LVD+VEDVKT+VKNKVPLVR
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALTESLAQTLQALHKSGCLSLVDIVEDVKTAVKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
SLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFS LAAIAKSVGMRP
Sbjct: 421 SLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSALAAIAKSVGMRP 480
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
LERS+EKLDDVRR KLSEMI GSGG+ + GTSSA VQ GSV S EASE SFVR+SAAS
Sbjct: 481 LERSLEKLDDVRRKKLSEMIGGSGGNASGGTSSATVQAVSGSVSSTEASEGSFVRRSAAS 540
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
MLSGK+P+ AAPA+KKGGP K K DG+G+ ETSK E PEDVEP+EMSLEEIESRL
Sbjct: 541 MLSGKKPLPAAPANKKGGPTKSGTNKKGDGAGRTETSKAIEPPEDVEPAEMSLEEIESRL 600
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
GSLI A+TV QLKS VWKERLEAISSL+QQVE +Q LDQSVEIL+RL+C +PGW+EKNVQ
Sbjct: 601 GSLIQAETVSQLKSTVWKERLEAISSLKQQVEGLQGLDQSVEILIRLLCAIPGWNEKNVQ 660
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQ+IEVI YLA+TATKFPKKCVVLCLLG SERVADIKTRAHAMKCLTTFS
Sbjct: 661 VQQQMIEVITYLASTATKFPKKCVVLCLLGTSERVADIKTRAHAMKCLTTFS-------- 712
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
VEDFGVS LKLKDLIDFCKD GLQSS AA+RNA
Sbjct: 713 ---------------------------VEDFGVSLLKLKDLIDFCKDIGLQSSVAASRNA 745
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSV 837
TIKLLGALHK+VGPDIKGFL+DVKPALLSALDAEY+KNPFEG + PKKTVRASES SSV
Sbjct: 746 TIKLLGALHKYVGPDIKGFLSDVKPALLSALDAEYDKNPFEGASAAPKKTVRASESMSSV 805
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
S+GG D LPRED+SGK TPTL+KS+ESPDWKVRLESIEAVNKI+EEANKRIQP GTGELF
Sbjct: 806 SAGGLDSLPREDVSGKVTPTLLKSMESPDWKVRLESIEAVNKIIEEANKRIQPTGTGELF 865
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
G LRGRLYDSNKNLVMATL T+G VASAMGPAVEKSSKG+L+DILKCLGDNKKHMREC L
Sbjct: 866 GALRGRLYDSNKNLVMATLTTIGGVASAMGPAVEKSSKGILADILKCLGDNKKHMRECAL 925
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T +D+WLAAVHLDKM+PY+ TAL DAKLGAEGRKDLFDWLS+QL+GLS F DA HLLKPA
Sbjct: 926 TTIDSWLAAVHLDKMIPYIATALIDAKLGAEGRKDLFDWLSRQLSGLSDFSDAVHLLKPA 985
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
AMTDKSSDVRKAAEACI E+LR GQET+EKNLKD+ GPALAL+LER+K GA Q
Sbjct: 986 GSAMTDKSSDVRKAAEACITEVLRVSGQETVEKNLKDLHGPALALVLERVKPYGAFQESF 1045
Query: 1075 -----VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQ 1129
+SMGPTSK+++KV KSA+NGV KH NR SSR IPTKG+R E +MSVQD AVQSQ
Sbjct: 1046 DSAKTISMGPTSKTNAKVGKSATNGVPKHANRITSSRAIPTKGSRSEPMMSVQDRAVQSQ 1105
Query: 1130 ALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVD 1189
ALLNVKDSNKEDRERMVVRRFKFE+ RIEQIQ+LENDMMKYFREDLHRRLLS DFKKQVD
Sbjct: 1106 ALLNVKDSNKEDRERMVVRRFKFEELRIEQIQDLENDMMKYFREDLHRRLLSADFKKQVD 1165
Query: 1190 GLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSL 1249
GLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD LRDE Y+L
Sbjct: 1166 GLEMLQKALPSIAKELIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDMLRDEAYTL 1225
Query: 1250 TESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRI 1309
TESEAA+FLPCL+EK GHNIEKVREKMRELTKQIV+ YSA+KT PYILEGLRSKNNRTRI
Sbjct: 1226 TESEAAIFLPCLIEKLGHNIEKVREKMRELTKQIVHAYSASKTFPYILEGLRSKNNRTRI 1285
Query: 1310 ECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369
E DLVGFLIDHH AEISGQLKSLQIVASLTAERDGE RKAALNTLATGYKILGEDIWRY
Sbjct: 1286 ESADLVGFLIDHHVAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYKILGEDIWRY 1345
Query: 1370 VGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSV 1429
VGKLTDAQKSMLDDRFKWKVREMEK+KEG+PG++RAALRRSVRENG D+AEQSG+VSQSV
Sbjct: 1346 VGKLTDAQKSMLDDRFKWKVREMEKRKEGRPGDSRAALRRSVRENGFDLAEQSGEVSQSV 1405
Query: 1430 SGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE 1489
SGPT +R+NY ELH++R IMP A+ SVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE
Sbjct: 1406 SGPTFLRKNYSPHELHMDRQIMPHAVTSVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE 1465
Query: 1490 LAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQN 1549
LAQAT DPEGS MDELVKDADRLVSCLA+KVAKTFDFSLTGASSRSCKYVLNTLMQTFQN
Sbjct: 1466 LAQATGDPEGSAMDELVKDADRLVSCLASKVAKTFDFSLTGASSRSCKYVLNTLMQTFQN 1525
Query: 1550 KRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV 1609
KRLA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV
Sbjct: 1526 KRLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV 1585
Query: 1610 LINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI 1669
LINLLRP+DPSRWPS AS+E+FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI
Sbjct: 1586 LINLLRPVDPSRWPSSASSETFAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI 1645
Query: 1670 HVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA 1729
H+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA
Sbjct: 1646 HIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA 1705
Query: 1730 YIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQ 1789
YIDLNLETLAAARMLTSTGP GQTHWGDSAANNP+SAT+SADAQLKQELAAIFKKIGDKQ
Sbjct: 1706 YIDLNLETLAAARMLTSTGPVGQTHWGDSAANNPSSATHSADAQLKQELAAIFKKIGDKQ 1765
Query: 1790 TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMAT 1849
TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS+PM+T
Sbjct: 1766 TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSLPMST 1825
Query: 1850 PPPAAL-----------------------------------------DNRIGGAIASKVL 1868
PPP+AL DNR I S+ L
Sbjct: 1826 PPPSALTASSPEYAPLSPVHTNSINDAKSMNTKSEPANFHLPPAYSEDNRTVNTITSRGL 1885
Query: 1869 PPENPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGL 1926
EN L+DQRNE+F GVT+GTLDAIRERMKSMQLAAAAGNPD GNRPL +NDN++NGL
Sbjct: 1886 ISENSLADQRNEKFLSGVTTGTLDAIRERMKSMQLAAAAGNPDSGNRPLTIVNDNLSNGL 1945
Query: 1927 SSQ-SRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1972
S Q R+ D ENP QG VLPMDEKALSGLQARMERLKSG I+ L
Sbjct: 1946 SGQVPRAPDSVGFENPVQGGVLPMDEKALSGLQARMERLKSGAIDSL 1992
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115548|ref|XP_002317062.1| microtubule organization protein [Populus trichocarpa] gi|222860127|gb|EEE97674.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3382 bits (8770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1675/2025 (82%), Positives = 1815/2025 (89%), Gaps = 53/2025 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLA+LC SI DPKD+R+RE PLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLASLCVSIFDPKDSRLREFAPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAV+ FLD MEKAIKNKV+KAVVPAIDVMFQALSEFGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVEAFLDAMEKAIKNKVSKAVVPAIDVMFQALSEFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+IL EKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILLEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE GPG SEE D P EIDEY+L+DPVDIL+PLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEPEGVSEVAGPGQSEEVAPDAPQEIDEYDLMDPVDILSPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR+HF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRSHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV--VEDVKTSVKNKVPL 418
SGSSRFLLPVLLEKLKEKKPT+ ESLTQTLQAMHKAGC NL D+ VE VKT+VKNKVPL
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTESLTQTLQAMHKAGCSNLADIFAVEYVKTAVKNKVPL 420
Query: 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
VRSLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFSVLAA+AK VGM
Sbjct: 421 VRSLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSVLAAVAKMVGM 480
Query: 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538
RPLERS+EKLDDVRR KLSEMIAGSG VA +S VQT+ GS+ SVE SESSFV+KSA
Sbjct: 481 RPLERSLEKLDDVRRKKLSEMIAGSGDGVAAVATSGTVQTARGSMSSVETSESSFVKKSA 540
Query: 539 ASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIES 596
ASMLSGK+P AAPA+KK P K A K DG+G+ ETS+ E PEDVEP+EMSLEEIE+
Sbjct: 541 ASMLSGKKPAPAAPANKKAAPTKSGASKKVDGAGRPETSRALEPPEDVEPAEMSLEEIET 600
Query: 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKN 656
RLGSLI ADT+ QLKSAVWKERLEAISSL++QVE +QN +QSVEIL+RL+C +PGW+EKN
Sbjct: 601 RLGSLIQADTISQLKSAVWKERLEAISSLKEQVEGLQNCNQSVEILIRLLCAIPGWNEKN 660
Query: 657 VQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG 716
VQVQQQ IEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRA+AMKCLTTF+EAVGPG
Sbjct: 661 VQVQQQFIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAYAMKCLTTFTEAVGPG 720
Query: 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
F+F+RLYKIMK+HKNPKVLSEGILWMV A++DFGVSHLKLKDLIDFCKDTGLQSS AA+R
Sbjct: 721 FVFDRLYKIMKEHKNPKVLSEGILWMVLAIDDFGVSHLKLKDLIDFCKDTGLQSSVAASR 780
Query: 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTS 835
NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG + +PKKTVR SES +
Sbjct: 781 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGASAIPKKTVRTSESMT 840
Query: 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895
VS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP GTGE
Sbjct: 841 CVSGGGLDSLPREDISGKVTPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPNGTGE 900
Query: 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955
LFG LRGRLYDSNKNL+M L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC
Sbjct: 901 LFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 960
Query: 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015
L LD+W+AAVHLDKM+PY+T AL ++KLGAEGRKDLFDWLSKQL+GLS FPDA HLLK
Sbjct: 961 ALNTLDSWVAAVHLDKMIPYITAALFESKLGAEGRKDLFDWLSKQLSGLSEFPDAIHLLK 1020
Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ- 1074
PA AMTDKS+DVRKAAEACI EILR GQE IE+NLKDI GPALAL+LER++ Q
Sbjct: 1021 PAGSAMTDKSADVRKAAEACISEILRVCGQEMIERNLKDIHGPALALVLERVRPASVYQE 1080
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
+SMGP+SK+SSKV K+ASNG+SKH NR+ISSRVIPTKG++PE MS+QD AVQ
Sbjct: 1081 SFESTKTISMGPSSKTSSKVGKAASNGISKHSNRSISSRVIPTKGSKPEPAMSIQDRAVQ 1140
Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
SQALLNVKDSNKEDRERMVVRRFKFE+PR+EQIQ+LE DMMKY REDL+RRLLS DFKKQ
Sbjct: 1141 SQALLNVKDSNKEDRERMVVRRFKFEEPRMEQIQDLEGDMMKYLREDLNRRLLSLDFKKQ 1200
Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
VDGLEMLQKALPSI +IIEVLDILL+WFVLQFCKSNTTCLLKVLEFLP LFD LRDE Y
Sbjct: 1201 VDGLEMLQKALPSIGNEIIEVLDILLKWFVLQFCKSNTTCLLKVLEFLPALFDLLRDEAY 1260
Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
+L+ESEAA+FLPCL+EK GHNIEKVREKMREL KQI++ YSATK+ PYILEGLRSKNNRT
Sbjct: 1261 TLSESEAAIFLPCLIEKLGHNIEKVREKMRELAKQILHAYSATKSFPYILEGLRSKNNRT 1320
Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
RIEC DLVGFLID HGAEISGQLKSLQIVASLTAERDGEIRKAALN LATGYKILGEDIW
Sbjct: 1321 RIECADLVGFLIDQHGAEISGQLKSLQIVASLTAERDGEIRKAALNALATGYKILGEDIW 1380
Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
RY+GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAEQSG+VSQ
Sbjct: 1381 RYLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAEQSGEVSQ 1440
Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
SVSGP L R+N+G EL VER IMPRAL S SGPTDWNEALDIISF SPEQSVEGMKVVC
Sbjct: 1441 SVSGPILARKNFGTQELQVERHIMPRALTSASGPTDWNEALDIISFSSPEQSVEGMKVVC 1500
Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
HELAQAT+D EGSVMDELVKDADRLVSCLANKVA+TFDFSLTGASSRSCKYVLNTLMQTF
Sbjct: 1501 HELAQATSDEEGSVMDELVKDADRLVSCLANKVARTFDFSLTGASSRSCKYVLNTLMQTF 1560
Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1607
QNK LA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF
Sbjct: 1561 QNKTLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1620
Query: 1608 VVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1667
VLINLLRPLDPSRWPSPAS E+FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRIL+
Sbjct: 1621 DVLINLLRPLDPSRWPSPASTETFAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILR 1680
Query: 1668 SIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPII 1727
SIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGA+IKGHLSMVPIDMKPQPII
Sbjct: 1681 SIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGASIKGHLSMVPIDMKPQPII 1740
Query: 1728 LAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGD 1787
LAYIDLNLETLAAARMLTST P GQ HWGDSAANN + AT+SA+AQLKQELAAIFKKIGD
Sbjct: 1741 LAYIDLNLETLAAARMLTSTAPVGQNHWGDSAANNSSPATHSAEAQLKQELAAIFKKIGD 1800
Query: 1788 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1847
KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKN AAGRTPSS+PM
Sbjct: 1801 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNTAAGRTPSSLPM 1860
Query: 1848 ATPPPAALD--------------NRIG-----------------------GAIASKVLPP 1870
+TPPP+A + N + GAI S+
Sbjct: 1861 STPPPSAPNVSSPDLQPLSPVHTNSLNDSKPLHAKPEATNFHLPPSYSEDGAILSRGFVS 1920
Query: 1871 ENPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSS 1928
EN L DQRNE+ GVTSGTLDAIRERMKSMQLAA AG PD G+RPL+++NDN+NNGLSS
Sbjct: 1921 ENSLGDQRNEKLISGVTSGTLDAIRERMKSMQLAATAGLPDSGSRPLMSVNDNLNNGLSS 1980
Query: 1929 QS-RSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1972
+ D A +ENP G VLP+DEKALSGLQARMERLKSG++EPL
Sbjct: 1981 LILHAPDSAGMENPVLGGVLPLDEKALSGLQARMERLKSGSLEPL 2025
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061471|ref|XP_002300496.1| microtubule organization protein [Populus trichocarpa] gi|222847754|gb|EEE85301.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3382 bits (8768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1685/2036 (82%), Positives = 1818/2036 (89%), Gaps = 64/2036 (3%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKL WEDRLLHKNWKVRNEANIDLA+LCDSI+DPKD+R+RE PLF+KT
Sbjct: 1 MSEEEKLLKEAKKLAWEDRLLHKNWKVRNEANIDLASLCDSISDPKDSRLREFAPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAVDVFLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVDVFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVKGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE VG GPSEE A+ P EIDEY+LVDPVDIL PLEK+GFW+GVKATKWS
Sbjct: 241 QDKEPEPEGVSEVVGSGPSEEVAAEAPQEIDEYDLVDPVDILGPLEKAGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
SGSSRFLLPVLLEKLKEKKPT+ E+L QTLQAMH AGCLNL D++E VKT+VKNK
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTEALAQTLQAMHTAGCLNLADIIEGNLRDYVKTAVKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTLNWVTFCIETS+KA +LKVHKDYVPICMECLNDGTP+VRD+AFSVLAA+AKS
Sbjct: 421 VPLVRSLTLNWVTFCIETSNKAVILKVHKDYVPICMECLNDGTPDVRDSAFSVLAAVAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMIAGSG V SS VQ GS+ SVE SE SFV+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMIAGSGDGVPAVASSGPVQAVRGSMSSVETSEGSFVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVKP--SAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593
KSAASMLSGKRP AA A+KK P K S K DG+G+ E+S+ E PEDVEP+EMSLEE
Sbjct: 541 KSAASMLSGKRPAPAAAANKKAAPTKSGVSKKGDGAGRAESSRAIEPPEDVEPAEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IE+RLGSLI ADTV QLKSAVWKERLEAISS + QVE +QNLDQSVEIL+RL+C +PGW+
Sbjct: 601 IETRLGSLIQADTVSQLKSAVWKERLEAISSFKLQVEGLQNLDQSVEILIRLLCAIPGWN 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV
Sbjct: 661 EKNVQVQQQVIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGF+F+RLYKIMK+HKNPKVLSEGI+WMVSA++DFGVSHLKLKDLIDFCKDTGLQSS A
Sbjct: 721 GPGFVFDRLYKIMKEHKNPKVLSEGIIWMVSAIDDFGVSHLKLKDLIDFCKDTGLQSSVA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
A+RNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY+KNPFEG + PKKTVR SE
Sbjct: 781 ASRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYDKNPFEGASAAPKKTVRTSE 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
STSSVS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP G
Sbjct: 841 STSSVSGGGLDSLPREDISGKITPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPTG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRLYDSNKNL+M L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
RECTL LD+W+AAVHLDKMVPY+T AL + KLGAEGRKDLFDWLSKQL+G S F DA H
Sbjct: 961 RECTLNTLDSWVAAVHLDKMVPYITAALIETKLGAEGRKDLFDWLSKQLSGSSEFSDAIH 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKAAEACI EILR GQE IEKNLKDIQGPALAL+LER++ G
Sbjct: 1021 LLKPASSAMTDKSSDVRKAAEACISEILRVCGQEMIEKNLKDIQGPALALVLERVRPAGG 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q +SMGP+SK+S KV K+ASNG+SKH NR+IS+RVIP KG++PE MS
Sbjct: 1081 FQGLSFESFESTKTISMGPSSKTSVKVGKAASNGISKHANRSISARVIPMKGSKPEPTMS 1140
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
QD AVQSQALLNVKDSNKEDRERMVVRRFKFE+PR+EQ+Q+LE+DMMKYFREDL+RRLL
Sbjct: 1141 FQDRAVQSQALLNVKDSNKEDRERMVVRRFKFEEPRMEQVQDLESDMMKYFREDLNRRLL 1200
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEML KALPSI K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLP+LFD
Sbjct: 1201 SPDFKKQVDGLEMLHKALPSIGKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPDLFD 1260
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
LRDE Y+L+ESEAA+FLPCL+EK GHNIEKVREKMRELTKQIV YSA K+ PYILEGL
Sbjct: 1261 RLRDEAYTLSESEAAIFLPCLIEKLGHNIEKVREKMRELTKQIVQAYSAAKSFPYILEGL 1320
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYK
Sbjct: 1321 RSKNNRTRIECADLVGFLIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYK 1380
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWR++GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAE
Sbjct: 1381 ILGEDIWRFLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAE 1440
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++SQSVSGP + R+NYG ELH+E +MPRAL SV+GP DWNEALDIISFGSPEQSV
Sbjct: 1441 QSGELSQSVSGPIIARKNYGTQELHMEGHMMPRALVSVNGPADWNEALDIISFGSPEQSV 1500
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVL 1540
EGMKVVCHELAQATND EGS MDELVKDAD+LVSCLANKV++TFDFSLTGASSR+CKYVL
Sbjct: 1501 EGMKVVCHELAQATNDAEGSAMDELVKDADKLVSCLANKVSRTFDFSLTGASSRACKYVL 1560
Query: 1541 NTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN 1600
NTLMQTFQNK LAYAV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN
Sbjct: 1561 NTLMQTFQNKILAYAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN 1620
Query: 1601 ADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDV 1660
ADRTSSFVVLINLLRPLDP+RWPSPAS E+FA RNQ+FSDLVVKCLIKLTKVLQ+TIYDV
Sbjct: 1621 ADRTSSFVVLINLLRPLDPTRWPSPASAETFAIRNQKFSDLVVKCLIKLTKVLQTTIYDV 1680
Query: 1661 DLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID 1720
DLDRILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID
Sbjct: 1681 DLDRILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID 1740
Query: 1721 MKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAA 1780
MKPQPIILAYIDLNLETLAAARMLTST P GQ HWGDSAANN + A +SA+AQLKQELAA
Sbjct: 1741 MKPQPIILAYIDLNLETLAAARMLTSTAPVGQNHWGDSAANNSSPAAHSAEAQLKQELAA 1800
Query: 1781 IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGR 1840
IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKN AAGR
Sbjct: 1801 IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNTAAGR 1860
Query: 1841 TPSSVPMATPPPAAL-----------------------------------------DNRI 1859
TPSS+P++TPPP+AL DNR
Sbjct: 1861 TPSSLPISTPPPSALNVSSPDLQPLSPVHTNSLNDAKPLHVKPETTNFHLPPSYAEDNRA 1920
Query: 1860 GGAIASKVLPPENPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLIN 1917
A S+ L EN L DQRNE+ GVTSGTLDAIRERMKSMQLAAA GNPD G+RPL++
Sbjct: 1921 VSAFLSRGLVSENSLGDQRNEKLIGGVTSGTLDAIRERMKSMQLAAATGNPDSGSRPLMS 1980
Query: 1918 MNDNVNNGLSSQS-RSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1972
MN+N+NNGLSSQ R+ D +ENP VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1981 MNENLNNGLSSQILRAPDSTGMENPLHSGVLPMDEKALSGLQARMERLKSGSLEPL 2036
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533943|ref|XP_003535517.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3270 bits (8478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1638/2039 (80%), Positives = 1781/2039 (87%), Gaps = 71/2039 (3%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIAYL+AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW
Sbjct: 61 VADSNAPVQEKALDALIAYLRAADADASRYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAVD FLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 IELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKD VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE QE +SE VGPGP EES D P EIDEYELVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEQEAVSEVVGPGPCEESGNDAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRI+PGDF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
S SSRFLLPVLLEKLKEKKP +AE+L QTLQAMHKAGC++L+D+VE VKT+ KNK
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALAEALMQTLQAMHKAGCISLIDIVEGRFPPYVKTATKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTL WVTFCIETS+K + KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKS
Sbjct: 421 VPLVRSLTLTWVTFCIETSNKVVITKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMI+GS V +S+A VQ + S S E SES V+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAETSESVLVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVK--PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593
+SAA MLSGKRPV + PA KK G VK + K DG + + K E PEDVEP+EMSLEE
Sbjct: 541 RSAAGMLSGKRPVQSVPAVKKVGVVKLGTNKKTDGVPQVKALKSVEPPEDVEPTEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IESR+GSLI +DT+ LKSAVWKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGW
Sbjct: 601 IESRIGSLIESDTITLLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWG 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI ++++TATKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAV
Sbjct: 661 EKNVQVQQQVIEVITHISSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGFIFERLYKIMK+HKNPKVLSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS A
Sbjct: 721 GPGFIFERLYKIMKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
ATRNA+IK LG LH+FVGPDIKGFL DVKPALLSALD EYEKNPFEG + V K+TVRA +
Sbjct: 781 ATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRAKD 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
S+S+V +GG D LPREDISGK +PTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ G
Sbjct: 841 SSSTVVAGGLDSLPREDISGKISPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRL DSNKN+VMA+L +G VASAMG AVEK+SKG+LSDILKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLLDSNKNIVMASLTAIGNVASAMGQAVEKASKGILSDILKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
REC L LDAWLAAVHLDKMVPY+ AL D+KLGAEGRKDLFDWLS+QL+GLS F +AA
Sbjct: 961 RECVLNTLDAWLAAVHLDKMVPYIAIALMDSKLGAEGRKDLFDWLSRQLSGLSSFAEAAQ 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKA+EACI EILR G E IEK +KDI GPAL LI+E++K GA
Sbjct: 1021 LLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLIVEKLKPYGA 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q VS+G SK +K KS +NGVSKHGNRA+SSRV+ TKGA+ ESI S
Sbjct: 1081 FQGTFFESFESGRAVSVGAISK--AKAGKSTANGVSKHGNRAVSSRVVATKGAKSESI-S 1137
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
VQD AVQSQALLN+KDSNKEDRERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLL
Sbjct: 1138 VQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLL 1197
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL D
Sbjct: 1198 SADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLD 1257
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
TL+DEGYSLTESE AVFLPCLVEK GHNIEKVREKMRELTKQ V YSA K PYILEGL
Sbjct: 1258 TLKDEGYSLTESEGAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSACKCFPYILEGL 1317
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGF+IDHHGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYK
Sbjct: 1318 RSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYK 1377
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARA RRSVRENGSD+AE
Sbjct: 1378 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAISRRSVRENGSDVAE 1437
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++++S++GP ++R+NYG + +++R +MPR + SGPTDWNEALDIISFGSPEQSV
Sbjct: 1438 QSGEMTRSLAGP-ILRKNYGQPDSNIDRQLMPRPMTVASGPTDWNEALDIISFGSPEQSV 1496
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLT-GASSRSCKYV 1539
+GMKV+CHELAQAT+DPEGS MDELVKDADRLVSCLANKVA+TFDFSLT GASSRSCKYV
Sbjct: 1497 DGMKVICHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYV 1556
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILD 1599
LNTLMQTFQNKRLA+AV+ESTLDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKILD
Sbjct: 1557 LNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILD 1616
Query: 1600 NADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYD 1659
NADRTSSFVVLINLLRPLD SRWPSPASNES A+RNQ+FSDLVVKCLIKLTKVLQSTIYD
Sbjct: 1617 NADRTSSFVVLINLLRPLDSSRWPSPASNESLASRNQKFSDLVVKCLIKLTKVLQSTIYD 1676
Query: 1660 VDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1719
VDLDRILQSIH+YLQ+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI
Sbjct: 1677 VDLDRILQSIHLYLQDLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1736
Query: 1720 DMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELA 1779
D KPQPIILAYI+LNLETLAAARMLT++GPGGQ HWGDSA NN S T+SADAQLKQELA
Sbjct: 1737 DAKPQPIILAYIELNLETLAAARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELA 1796
Query: 1780 AIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1839
AIFKKIG+KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG
Sbjct: 1797 AIFKKIGEKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1856
Query: 1840 RTPSSVPMATPPPAALD-----------------------------------------NR 1858
RTPSS+PM TPPPA+L+ NR
Sbjct: 1857 RTPSSLPMPTPPPASLNISSPDFAPLSPVNANPLGDAKLNVKPEPTNFNLPPSSYNEENR 1916
Query: 1859 IGGAIASKVLPPENPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLI 1916
AI S+ L + L DQRN+RF GVTSGTLDAIRERMKSMQLAAAAG+ + G R L
Sbjct: 1917 AVNAITSRALNSDYTLGDQRNDRFMTGVTSGTLDAIRERMKSMQLAAAAGSTESGGRHLT 1976
Query: 1917 NMNDNVNNGLSSQSR---SSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1972
+ NDN N GL S+ +S+ EN G VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1977 SANDNFNQGLPPPSQIPHASEHVGTENTMHGGVLPMDEKALSGLQARMERLKSGSLEPL 2035
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574625|ref|XP_003555446.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3252 bits (8431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1639/2039 (80%), Positives = 1786/2039 (87%), Gaps = 71/2039 (3%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
V DSNAPVQ+KALDALIAYL+AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW
Sbjct: 61 VTDSNAPVQEKALDALIAYLRAADADAARYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAVD FLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 IELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKD VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE QE +SE VGPGPSEES D P EIDEYELVDPVDIL PLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEQEAVSEVVGPGPSEESGNDAPQEIDEYELVDPVDILIPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRI+PGDF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
S SSRFLLPVLLEKLKEKKP +AE+LTQTLQAMHKAGC++L+D+VE VKT+ KNK
Sbjct: 361 SSSSRFLLPVLLEKLKEKKPALAEALTQTLQAMHKAGCISLIDIVEGRFPSYVKTATKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTL WVTFCIETS+K ++KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKS
Sbjct: 421 VPLVRSLTLTWVTFCIETSNKGVIMKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMI+GS V +S+A VQ + S S E+SES+FV+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAESSESAFVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEE 593
+SAA MLSGKRPV + P +KKGG VK K DG + + SK E PEDVEP+EMSLEE
Sbjct: 541 RSAAGMLSGKRPVQSVPVAKKGGVVKSGTNKKTDGVPQVKASKSVEPPEDVEPTEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IESR+GSLI +DT+ QLKSAVWKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGWS
Sbjct: 601 IESRIGSLIQSDTITQLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWS 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI ++ +TATKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAV
Sbjct: 661 EKNVQVQQQVIEVITHIGSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGFIFERLYKI+K+HKNPKVLSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS A
Sbjct: 721 GPGFIFERLYKILKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
ATRNA+IK LG LH+FVGPDIKGFL DVKPALLSALD EYEKNPFEG + V K+TVRAS+
Sbjct: 781 ATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRASD 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
S+S+ +GG D LPREDISGK TPTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ G
Sbjct: 841 SSSTAVAGGLDSLPREDISGKITPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRL DSNKN+VMA+L T+G VASAMG AVEK+SKG+LSD+LKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLVDSNKNIVMASLTTIGNVASAMGQAVEKASKGILSDVLKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
REC L LDAWLAAVHLDKMV Y+ AL D+KLGAEGRKDLFDWLSKQL+ LS F +AA
Sbjct: 961 RECVLNTLDAWLAAVHLDKMVSYIAIALMDSKLGAEGRKDLFDWLSKQLSELSSFAEAAQ 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKA+EACI EILR G E IEK +KDI GPAL L+LE++K GA
Sbjct: 1021 LLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLVLEKLKPYGA 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q VS+G TSK +K KS +NGVSKHGNRA+SSRV+ TKG + ESI S
Sbjct: 1081 FQGTFFESFESGRAVSVGATSK--AKAGKSTANGVSKHGNRAVSSRVVATKGTKSESI-S 1137
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
VQD AVQSQALLN+KDSNKEDRERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLL
Sbjct: 1138 VQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLL 1197
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL D
Sbjct: 1198 SADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLD 1257
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
TL+DEGYSLTESE AVFLPCLVEK GHNIEKVREKMRELTKQ V YSA+K PYILEGL
Sbjct: 1258 TLKDEGYSLTESEVAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSASKCFPYILEGL 1317
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGF+IDHHGAEISGQLKSLQIVASLTAERDGE RKAALN LATGYK
Sbjct: 1318 RSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNALATGYK 1377
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARA LRRSVRENGSD+AE
Sbjct: 1378 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARANLRRSVRENGSDVAE 1437
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++++S++GP ++R+NY + +++R +MP + SGPTDWNEALDIISFGSPEQSV
Sbjct: 1438 QSGEMARSLTGP-MLRKNYAQPDSNIDRQLMPHPMTVASGPTDWNEALDIISFGSPEQSV 1496
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLT-GASSRSCKYV 1539
+GMKVVCHELAQAT+DPEGS MDELVKDADRLVSCLANKVA+TFDFSLT GASSRSCKYV
Sbjct: 1497 DGMKVVCHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYV 1556
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILD 1599
LNTLMQTFQNKRLA+AV+ESTLDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKILD
Sbjct: 1557 LNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILD 1616
Query: 1600 NADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYD 1659
NADRTSSFVVLINLLRPLD SRWPSPA NES A+RNQ+FSDLVVKCLIKLTKVLQSTIYD
Sbjct: 1617 NADRTSSFVVLINLLRPLDSSRWPSPALNESLASRNQKFSDLVVKCLIKLTKVLQSTIYD 1676
Query: 1660 VDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1719
VDLDRILQSIH+YLQ+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI
Sbjct: 1677 VDLDRILQSIHLYLQDLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1736
Query: 1720 DMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELA 1779
D KPQPIILAYI+LNLETLAAARMLT++GPGGQ HWGDSA NN S T+SADAQLKQELA
Sbjct: 1737 DAKPQPIILAYIELNLETLAAARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELA 1796
Query: 1780 AIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1839
AIFKKIG+KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG
Sbjct: 1797 AIFKKIGEKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1856
Query: 1840 RTPSSVPMATPPPAALD-----------------------------------------NR 1858
RTPSS+PM TPPPA+L+ NR
Sbjct: 1857 RTPSSLPMPTPPPASLNISSPDFAPLSPVNTNPLGDAKLNVKPDPTNFNLPPSSYNEENR 1916
Query: 1859 IGGAIASKVLPPENPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLI 1916
AI S+ L + L DQRN+RF GVTSGTLDAIRERMKSMQLAAAAG+ + G R L
Sbjct: 1917 AVNAITSRALNSDYTLGDQRNDRFMTGVTSGTLDAIRERMKSMQLAAAAGSTESGGRHLT 1976
Query: 1917 NMNDNVNNGLSSQSR---SSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1972
+ NDN+N+GL S+ +S+ EN G VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1977 SANDNLNHGLPPPSQIPHASEHVGTENTMHGGVLPMDEKALSGLQARMERLKSGSLEPL 2035
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19912731|dbj|BAB88648.1| microtubule bundling polypeptide TMBP200 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 3180 bits (8246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1575/2031 (77%), Positives = 1773/2031 (87%), Gaps = 64/2031 (3%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSE+EKLLKEAKKLPW++R HKNWKVRN+ANIDLAA+CDSITDPKD R+RE GPLF+KT
Sbjct: 1 MSEDEKLLKEAKKLPWDERFAHKNWKVRNDANIDLAAVCDSITDPKDPRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALI YLKAADADAGRYAKEVCDA+ KCLTGRPKTVEKAQ VF+LW
Sbjct: 61 VADSNAPVQEKALDALICYLKAADADAGRYAKEVCDAVVVKCLTGRPKTVEKAQMVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAV+ FLD MEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ
Sbjct: 121 IELEAVEAFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWI K+ VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWISKETVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E++S+ V GPSEES ADVP IDEY+LVDPVDIL PLEK+GFWEGVKA KWS
Sbjct: 241 QDKEPELEVVSDAVAAGPSEESAADVPQRIDEYDLVDPVDILIPLEKTGFWEGVKAAKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTK+IAPGDF E+CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKKIAPGDFAEICRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
SGSSRFLLPVLLEKLKEKKPT+ ++LTQTLQAMHK+GCL L D+VEDVKT+ KNKVPLVR
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTDALTQTLQAMHKSGCLILTDIVEDVKTATKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
SLTLNWVTFCIETS+KA +LK HK+YVPICME LNDGTPEVRDAAFS LAA+AKSVGMRP
Sbjct: 421 SLTLNWVTFCIETSNKAVILKAHKEYVPICMESLNDGTPEVRDAAFSALAAVAKSVGMRP 480
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
LE+S+EKLDDVR+ KLSEMI GSGGD + +SS V +SGG + S +AS S V++SAAS
Sbjct: 481 LEKSLEKLDDVRKKKLSEMIGGSGGDPVSTSSSGAVPSSGGIMSSTQASTGSLVKRSAAS 540
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
MLSGK+PV AAP SKKG K K DG+ + + SK E EDVEP+EMSLEEIES+L
Sbjct: 541 MLSGKKPVQAAPPSKKGASAKSGTNKRGDGATQLKASKPVEV-EDVEPAEMSLEEIESKL 599
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
GSLI +T+ QLKSAVWKERLEAISS ++QVEA++ LD SVEILVRL+C +PGWSEKNVQ
Sbjct: 600 GSLIQPETITQLKSAVWKERLEAISSFKEQVEALKELDPSVEILVRLLCAVPGWSEKNVQ 659
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQ VI++IN++A+TA+K+PKKCVVLCL G+SERVADIKTRA AMKCLTTF EAVGPGF+
Sbjct: 660 VQQLVIDIINHIASTASKYPKKCVVLCLQGVSERVADIKTRAQAMKCLTTFCEAVGPGFV 719
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMV+AV+DFGVSHLKLKDLIDFCKDTGLQSSAAATRNA
Sbjct: 720 FERLYKIMKEHKNPKVLSEGILWMVTAVDDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 779
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSV 837
TIKL+GALHKFVGPDIKGFL+DVKPAL+SALDAEY+KNPFEG +V PKKTV+ S++ S+
Sbjct: 780 TIKLIGALHKFVGPDIKGFLSDVKPALISALDAEYDKNPFEGASVAPKKTVKTSDA-PSL 838
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSGG D LPREDISGK TP L+K LES DWK RLESIE VNKILEEANKRIQP GTGELF
Sbjct: 839 SSGGLDSLPREDISGKITPALLKGLESSDWKARLESIETVNKILEEANKRIQPTGTGELF 898
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
G LRGRL SNKNLV+ATL T+G VASAMGPAVEKSSKG+LSDILKCLGDNKKHMRECTL
Sbjct: 899 GALRGRLCYSNKNLVIATLSTVGGVASAMGPAVEKSSKGILSDILKCLGDNKKHMRECTL 958
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
LD+WLAAVHLDKMVPY+T ALTDAKLGAEGRKDLFDWLSKQLTG+ FPDA HLLKP
Sbjct: 959 NTLDSWLAAVHLDKMVPYITGALTDAKLGAEGRKDLFDWLSKQLTGMKEFPDAVHLLKPV 1018
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ AMTDKS+DVRKAAEAC E+LR GQE + KNLKDIQGPALA+++ER++ G Q
Sbjct: 1019 ASAMTDKSADVRKAAEACFGELLRVCGQEMVSKNLKDIQGPALAIVVERLRPYGVLQETF 1078
Query: 1075 -----VSMGPTSKSSSKVPKSA--SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
S G TSK SK+ KS + S+HGNRA +SR IPT+ +R E++MSVQD +VQ
Sbjct: 1079 DLGRTSSTGTTSKVGSKIGKSTGPAERASRHGNRAGASRAIPTRNSRQETLMSVQDISVQ 1138
Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
SQAL+NVKDS+K +RER+VVRRFKFE+PR+EQIQ+LE+D+MKYFREDLHRRLLSTDFKKQ
Sbjct: 1139 SQALINVKDSHKGERERIVVRRFKFEEPRLEQIQDLESDLMKYFREDLHRRLLSTDFKKQ 1198
Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
VDG+EMLQKALPSI K++IEVLDI+LRWFVL+FC+SNT+CLLKVLEFLPELF+ LR+EGY
Sbjct: 1199 VDGIEMLQKALPSIAKELIEVLDIVLRWFVLRFCESNTSCLLKVLEFLPELFEMLRNEGY 1258
Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
+TE+EAA+FLPCLVEKSGHNIEKVREKMRELTKQI++ YSA KT PYILEGLRS++NRT
Sbjct: 1259 MMTEAEAAIFLPCLVEKSGHNIEKVREKMRELTKQIIHAYSAAKTFPYILEGLRSRSNRT 1318
Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
RIEC DLVG+L+D+H AEI GQLKSL+ VA+LTAERDGE RKAALNTLATGYKILG+DIW
Sbjct: 1319 RIECADLVGYLLDNHEAEIGGQLKSLKDVANLTAERDGETRKAALNTLATGYKILGDDIW 1378
Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
+Y+GKLT+AQ+SMLDDRFKWK REM+K++EG+PGEARAALRRSVR+NG+DIAE SG+VS+
Sbjct: 1379 KYLGKLTEAQRSMLDDRFKWKAREMDKRREGRPGEARAALRRSVRDNGTDIAEPSGEVSR 1438
Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
S++GP L R Y ++E +ER + R ++ GP+DWNEALDII+ SPEQSVEGMKVVC
Sbjct: 1439 SLAGPILNRDIYNNTEFPMERIVNLRPVSGTMGPSDWNEALDIIASDSPEQSVEGMKVVC 1498
Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
H LA ATNDPEGS MD++VKDAD+LVSCLANKVA+TFDFSL GASSRSCKYVLNTLMQTF
Sbjct: 1499 HLLAVATNDPEGSAMDDIVKDADKLVSCLANKVARTFDFSLMGASSRSCKYVLNTLMQTF 1558
Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1607
QN+ LA+AV+ESTLD LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNADRTSSF
Sbjct: 1559 QNRTLAHAVRESTLDILITELLLWLLDERVPRMDDGSQLLKALNVLMLKILDNADRTSSF 1618
Query: 1608 VVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1667
VVLI LLRPLDPSRWPSPA++ES RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQ
Sbjct: 1619 VVLIKLLRPLDPSRWPSPATDESLVIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1678
Query: 1668 SIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPII 1727
SIH+YLQELGM+EIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPIDM+P PII
Sbjct: 1679 SIHIYLQELGMDEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDMQPPPII 1738
Query: 1728 LAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGD 1787
LAYIDLNL+TLAAARMLT + P GQTHWGDSAANNP AT++ADAQLKQELAAIFKKIGD
Sbjct: 1739 LAYIDLNLQTLAAARMLTPSVP-GQTHWGDSAANNPAPATHNADAQLKQELAAIFKKIGD 1797
Query: 1788 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1847
KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM
Sbjct: 1798 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1857
Query: 1848 ATPPPAAL-----------------------------------------DNRIGGAIASK 1866
+TPPP++L D+R G A+ S+
Sbjct: 1858 STPPPSSLNLSSPKFGKLSPVNTNPLNDAKSVNNKVEPSQFSLPPSYGEDDRGGNALLSR 1917
Query: 1867 VLPPE-----NPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMN 1919
L E + L +QRN+R GVTSGTL+AIRERMKSM LAA GNPDP +R L++MN
Sbjct: 1918 GLSSEHLELRHQLGEQRNDRLPSGVTSGTLEAIRERMKSMSLAATGGNPDPSSRTLMSMN 1977
Query: 1920 DNVNNGLSSQSRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIE 1970
NV++ +S+Q+ + +S+EN Q VLPMDEKALSGLQARMERLKSG++E
Sbjct: 1978 GNVSHMVSTQAPGIEHSSIENSIQSGVLPMDEKALSGLQARMERLKSGSME 2028
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434204|ref|XP_004134886.1| PREDICTED: protein MOR1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3140 bits (8140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1573/2030 (77%), Positives = 1750/2030 (86%), Gaps = 83/2030 (4%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLAA+CDSITDPKD+R+RE GPLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLSHKNWKVRNEANIDLAAVCDSITDPKDSRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIAYL+AADADAGR+AKE CDAI AKCLTGRPKTVEKAQAVFMLW
Sbjct: 61 VADSNAPVQEKALDALIAYLRAADADAGRFAKETCDAIVAKCLTGRPKTVEKAQAVFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEA DVFLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAADVFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV+G+ARP+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVTGSARPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE +E SE VG GPSEES ADVP EIDEY+LVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEKEDTSEAVGTGPSEESVADVPQEIDEYDLVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAEL+KLAST++IAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNL+RGLR +F
Sbjct: 301 ERKEAVAELSKLASTRKIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLSRGLRANF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
S SSRFLLPVLLEKLKEKKP + ESLTQTLQAMHKAGCL+L DV+EDVKT+ KNKVPLVR
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALMESLTQTLQAMHKAGCLSLSDVIEDVKTASKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
S TL+WVTFCIETS+KA +LKVHK+YVPI ME LNDGTPEVRDAAF LAA+AK
Sbjct: 421 SSTLSWVTFCIETSNKAVILKVHKEYVPIFMESLNDGTPEVRDAAFLALAAVAK------ 474
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
IE L + ++ + + V S+ FV+KSAAS
Sbjct: 475 ----IESLSLSLSSGFGMLVPIYFAFIVN-----------NQLDLVLDSDGLFVKKSAAS 519
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGK------QETSKLTEAPEDVEPSEMSLEEI 594
MLSGKRP AAP+SKKG K K G ++SK E PEDVEP+EMSLEE+
Sbjct: 520 MLSGKRPAQAAPSSKKGNLAKSGTNKKADGSVPSGAPPKSSKPIEVPEDVEPAEMSLEEV 579
Query: 595 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 654
ES+LGSLI ADTV QLKS VWKERLEAISSL+QQVE +++L+ SVEILVRL+C++PGWSE
Sbjct: 580 ESKLGSLIEADTVSQLKSTVWKERLEAISSLKQQVEGLEDLNPSVEILVRLLCIIPGWSE 639
Query: 655 KNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG 714
KNVQVQQQVIEVI Y+A+TA KFPKKC+VLCL GISERVADIKTR AMKCLTTFSEAVG
Sbjct: 640 KNVQVQQQVIEVITYIASTAKKFPKKCIVLCLSGISERVADIKTRVQAMKCLTTFSEAVG 699
Query: 715 PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAA 774
PGFIFERL+KIMK+HKNPKVLSEG+LWMVSAVEDFG+S LKLKDLIDFCK+TGLQSSAAA
Sbjct: 700 PGFIFERLFKIMKEHKNPKVLSEGLLWMVSAVEDFGISLLKLKDLIDFCKETGLQSSAAA 759
Query: 775 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT-VVPKKTVRASES 833
TRN TIKLLG +HKFVGPD+KGFL+DVKPALL+A+D E+EKNPFEGT PK+TVRA E
Sbjct: 760 TRNVTIKLLGCVHKFVGPDLKGFLSDVKPALLTAIDTEFEKNPFEGTAAAPKRTVRAEEL 819
Query: 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT 893
TSS S G+DGLPREDISGK TPTL+K+ ESPDWKVRLESIEAVNK+LEEANKRIQP GT
Sbjct: 820 TSSTSVSGTDGLPREDISGKITPTLLKNFESPDWKVRLESIEAVNKMLEEANKRIQPTGT 879
Query: 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 953
+L G LRGRLYDSNKNLVMATL T+G VASAMGP+VEKS KGVLSD+LKCLGDNKKHMR
Sbjct: 880 SDLLGALRGRLYDSNKNLVMATLATIGNVASAMGPSVEKSGKGVLSDVLKCLGDNKKHMR 939
Query: 954 ECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013
E TLT LDAWLAAVH DKM+PY+ AL D K+ AEGRKDL +WLS++L+G++ DA L
Sbjct: 940 EATLTALDAWLAAVHFDKMIPYMILALVDNKVSAEGRKDLLEWLSRKLSGINDSSDAIQL 999
Query: 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK----- 1068
LKPA A+TDKSSDVRKAAE+CI EILR G QE +EK +KDI GP L+L+LER++
Sbjct: 1000 LKPACSALTDKSSDVRKAAESCITEILRVGRQEAVEKVVKDISGPGLSLVLERLRPYGAL 1059
Query: 1069 ---LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
+ A QV+ SK++ KV K+ SNGV+KHGN+AISSR +KG R ES++S D A
Sbjct: 1060 QESFDSAKQVTSSLPSKNAIKVGKATSNGVAKHGNKAISSRGTISKGNRTESLISAHDLA 1119
Query: 1126 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFK 1185
VQSQALLNVKDSNKE+RER++VR+FKFE+PRIEQIQ+LENDMMKYFREDL RR+LSTDFK
Sbjct: 1120 VQSQALLNVKDSNKEERERIIVRKFKFEEPRIEQIQDLENDMMKYFREDLQRRMLSTDFK 1179
Query: 1186 KQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDE 1245
KQVDG+EMLQKAL SI KD+IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+ L+DE
Sbjct: 1180 KQVDGIEMLQKALASIGKDVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFEILKDE 1239
Query: 1246 GYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNN 1305
GY + ESEAA+FLPCL+EK GHNIEKV+EKMRELTKQI+ YSATK PYILEGLRSKNN
Sbjct: 1240 GYCINESEAAIFLPCLIEKLGHNIEKVKEKMRELTKQIIQAYSATKMFPYILEGLRSKNN 1299
Query: 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGED 1365
RTRIEC DL+GFLID++G+EISGQL+SLQ+VASLTAERDGEIRKAALNTLATGYKILGE+
Sbjct: 1300 RTRIECADLIGFLIDNYGSEISGQLRSLQLVASLTAERDGEIRKAALNTLATGYKILGEE 1359
Query: 1366 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1425
+WRYVGKLTDAQ+SMLDDRFKWKVREMEKKKEGKPGEARAA+RR +RE S++AEQSG+V
Sbjct: 1360 VWRYVGKLTDAQRSMLDDRFKWKVREMEKKKEGKPGEARAAMRRPLREYESEVAEQSGEV 1419
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKV 1485
S+S+SG R+NYG SELH+ER +P+ L + +GPTDWNEA+DIISFGSPEQSVEGMKV
Sbjct: 1420 SRSMSGTISTRKNYG-SELHMERQSVPQPLTTANGPTDWNEAMDIISFGSPEQSVEGMKV 1478
Query: 1486 VCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQ 1545
VCHELAQA++DPEGS MDEL +DADRLV CLA KVAKTFD+SLTGASSRSCKYVLNTLMQ
Sbjct: 1479 VCHELAQASSDPEGSSMDELARDADRLVLCLATKVAKTFDYSLTGASSRSCKYVLNTLMQ 1538
Query: 1546 TFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS 1605
TFQNKRLAYAV+E TLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS
Sbjct: 1539 TFQNKRLAYAVKEKTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS 1598
Query: 1606 SFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRI 1665
SFVVLINLLRPL+PSRWPS S ESFA+RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRI
Sbjct: 1599 SFVVLINLLRPLEPSRWPSTGSKESFASRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRI 1658
Query: 1666 LQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP 1725
LQSIH+YLQ LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP
Sbjct: 1659 LQSIHLYLQNLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP 1718
Query: 1726 IILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKI 1785
IILAYIDLNLETLAAARMLTSTGP GQTHWGDS ANN +S T SADAQLKQELAAIFKKI
Sbjct: 1719 IILAYIDLNLETLAAARMLTSTGPAGQTHWGDSTANNASSGTQSADAQLKQELAAIFKKI 1778
Query: 1786 GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSV 1845
GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQME+NAAAGRTPSS+
Sbjct: 1779 GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMERNAAAGRTPSSL 1838
Query: 1846 PMATPPPAAL----------------------------------------DNRIGGAIAS 1865
P++TPPPA++ DNRI I S
Sbjct: 1839 PLSTPPPASMNSSPDFAPLSPVHTNSLTEAKSLNVKPEPTNFTLPPSYTEDNRI---ITS 1895
Query: 1866 KVLPPENPLSDQRNERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVN 1923
+ P+ L DQRN+++ GVTSGTLDAIRERMKSMQLAAAAGN + G++PL+++NDN++
Sbjct: 1896 RGPGPDYSLGDQRNDKYISGVTSGTLDAIRERMKSMQLAAAAGNHESGSKPLMSVNDNLH 1955
Query: 1924 NGLSSQ-SRSSDRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 1972
G+ +Q S+ S+ VEN AQ VLPMDEKALSGLQARMERLKSGTIEPL
Sbjct: 1956 PGMIAQMSQPSEHIGVENSAQAGVLPMDEKALSGLQARMERLKSGTIEPL 2005
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823359|ref|XP_002879562.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] gi|297325401|gb|EFH55821.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 3078 bits (7980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1540/1987 (77%), Positives = 1723/1987 (86%), Gaps = 29/1987 (1%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA+L DSITDPKD R+R+ G LF+KTV
Sbjct: 3 AEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASLFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIAAKCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIAAKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELTNVSGGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKKP+V E LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKPSVTEPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + SE+SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSEASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +APAS K G KKDGS + E K E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAPASKKVGTGKPGGGKKDGSVRNEGPKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +T+ QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETISQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISSKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIILALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQETIEKNLKDI GPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQETIEKNLKDIHGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK SK+ KS SNG K GNR SR +PTKG++ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVSKISKSTSNGTLKQGNR---SRAVPTKGSQ---ITSVHDIAIQSQALLNT 1134
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQI +LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1135 KDSNKEDRERVVVRRIKFEELRPEQILDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1194
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1195 QKALPSVSKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1254
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQ++ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1255 AIFLPCLAEKLGHNIEKVREKMRELMKQLIQAYSVAKTYPYILEGLRSKNNRTRIECTDL 1314
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L +VASLTAERDGE+RKAALNT+ATGYKILG+DIW+YVGKLT
Sbjct: 1315 IGYLLETCGTEIGGLLKYLNMVASLTAERDGELRKAALNTMATGYKILGDDIWKYVGKLT 1374
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWKV+EMEK++EGKPGEARAALRRSVR+NG ++AEQSGD+SQ V GP
Sbjct: 1375 DAQKSMIDDRFKWKVKEMEKRREGKPGEARAALRRSVRDNGPEVAEQSGDLSQIVPGPLF 1434
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R+NYG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1435 PRQNYGISEQILERNPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1494
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1495 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1554
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1555 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1614
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1615 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1674
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1734
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT IG
Sbjct: 1735 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSKIG 1794
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1795 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1854
Query: 1855 L---DNRIGGAIASKVLPPENPLSD-------QRNERFGVTSGTLDAIRERMKSMQLAAA 1904
L I + P NP SD N GV +GTLDAIRERMK+MQL A+
Sbjct: 1855 LALPSPDIPSLSSLDAKPLMNPRSDLYTDDIRASNMNPGVMTGTLDAIRERMKNMQL-AS 1913
Query: 1905 AGNPDPGNRPLINMNDNVNNGLSSQSRSSDRASVENP-AQGSVLPMDEKALSGLQARMER 1963
+G +P ++PL+ NDN++ ++ QS + E P VLPMDEKALSGLQARMER
Sbjct: 1914 SGTLEPVSKPLMPTNDNLS--MNQQSVPQSQMGQETPHTHPVVLPMDEKALSGLQARMER 1971
Query: 1964 LKSGTIE 1970
LK G++E
Sbjct: 1972 LKGGSLE 1978
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30686489|ref|NP_565811.2| microtubule organization 1 protein [Arabidopsis thaliana] gi|75250086|sp|Q94FN2.1|MOR1_ARATH RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein GEMINI POLLEN 1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1; AltName: Full=Protein RID5; AltName: Full=Protein ROOT INITIATION DEFECTIVE 5 gi|14317953|gb|AAK59871.1|AF367246_1 microtubule organization 1 protein [Arabidopsis thaliana] gi|22252950|gb|AAM94170.1| MOR1/GEM1 [Arabidopsis thaliana] gi|330254039|gb|AEC09133.1| microtubule organization 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3056 bits (7922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1529/1987 (76%), Positives = 1719/1987 (86%), Gaps = 31/1987 (1%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +A AS K G KKDGS + E SK E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK +K+ KS SNG K GNR SR +PTKG+ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1615
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1616 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1675
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1676 DLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1735
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT TIG
Sbjct: 1736 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIG 1795
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1796 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1855
Query: 1855 L---DNRIGGAIASKVLPPENPLSD-------QRNERFGVTSGTLDAIRERMKSMQLAAA 1904
L I + V P NP SD N GV +GTLDAIRERMK+MQLA++
Sbjct: 1856 LALPSPDIPSLSSLDVKPLMNPRSDLYTDDIRASNMNPGVMTGTLDAIRERMKNMQLASS 1915
Query: 1905 AGNPDPGNRPLINMNDNVNNGLSSQSRSSDRASVEN-PAQGSVLPMDEKALSGLQARMER 1963
+P ++PL+ NDN++ ++ QS + E VLPMDEKALSGLQARMER
Sbjct: 1916 ----EPVSKPLMPTNDNLS--MNQQSVPPSQMGQETVHTHPVVLPMDEKALSGLQARMER 1969
Query: 1964 LKSGTIE 1970
LK G++E
Sbjct: 1970 LKGGSLE 1976
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413952123|gb|AFW84772.1| hypothetical protein ZEAMMB73_280693 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 2868 bits (7436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1432/2009 (71%), Positives = 1685/2009 (83%), Gaps = 57/2009 (2%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE GPLF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDAL+A+ +AADADA RYAKEVCD+I AKCLTGRPKTVEKAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALLAFQRAADADASRYAKEVCDSIVAKCLTGRPKTVEKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEA +VFL+ MEKA+KNKVAKAVVPAIDVMFQALSEFG K++PPK+ILKMLPELFDH D
Sbjct: 123 ELEASEVFLEAMEKAVKNKVAKAVVPAIDVMFQALSEFGTKVVPPKKILKMLPELFDHPD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVSGLAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
+KEL +E + E G SEE+ D P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 EKELEEESVPETSGANTSEEAATDAPVEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
R+DAVAELTKL S K+IAPGDF E+CRTLKKLITDVN+AV+VEA QAIGNLARGLR FS
Sbjct: 303 RRDAVAELTKLGSAKKIAPGDFHEICRTLKKLITDVNLAVSVEATQAIGNLARGLRAQFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
G++R LLPVLLEKLKEKKPT+ E+L+QTLQAMHK+GC L+DV+EDV+ +VKNKVPLVRS
Sbjct: 363 GNARMLLPVLLEKLKEKKPTMTEALSQTLQAMHKSGCFTLIDVIEDVRAAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
LTL WV FCIETS+KA VLK+HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PL
Sbjct: 423 LTLTWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLS+MI GS D + +A + TSG + + ++S +++SAASM
Sbjct: 483 ERSLEKLDDVRKKKLSDMI-GSSSDSVLSSGTAPITTSGAATSARGVADSMSMKRSAASM 541
Query: 542 LSGKRPVSAAPASKKGGPVKPSA--KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLG 599
LSGK+PV AA A+KK GP K +A K DG + + S E EDVEP+EMS EEIE RL
Sbjct: 542 LSGKKPVQAAAATKKSGPSKSTAAKKTDGGSQSKASAALEI-EDVEPAEMSFEEIEERLK 600
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQV 659
S++ A+T+ QLKS+VWKERLEAI L+Q+VE + LD+S E+L+RL+C +PGWSEKNVQV
Sbjct: 601 SVVKAETISQLKSSVWKERLEAIGVLKQEVENLTELDKSAELLIRLLCAVPGWSEKNVQV 660
Query: 660 QQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIF 719
QQQVIEV Y+A+T KFPK+CVVLCLLG+SERVADIKTR AMKCLT F EAVGPGF+F
Sbjct: 661 QQQVIEVNTYIASTVNKFPKRCVVLCLLGVSERVADIKTRTSAMKCLTAFCEAVGPGFVF 720
Query: 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNAT 779
ERLYKIMK+HKNPKVLSEGILWMVSAVEDFG+S+LKLKD+IDFCKDTGLQSSAA TRNAT
Sbjct: 721 ERLYKIMKEHKNPKVLSEGILWMVSAVEDFGISNLKLKDMIDFCKDTGLQSSAAVTRNAT 780
Query: 780 IKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV--PKKTVRASESTSSV 837
IKL+G LHKFVGPDIKGFL+DVKPALLSALD EYEKNPFEG PK+TVR ++ SSV
Sbjct: 781 IKLIGMLHKFVGPDIKGFLSDVKPALLSALDTEYEKNPFEGAAAAAPKRTVRVLDTASSV 840
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
S+G DGLPREDIS K TPTL+K+L SPDWKVRLESI+AV KI+EEANKRIQP GT +LF
Sbjct: 841 SAGLFDGLPREDISAKITPTLLKNLGSPDWKVRLESIDAVTKIVEEANKRIQPTGTADLF 900
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
LRGRLYDSNKNLVMATL T+G +A AMGP+VEKSSKG+L+D+LKCLGDNKKHMRECTL
Sbjct: 901 SALRGRLYDSNKNLVMATLSTIGGLAYAMGPSVEKSSKGILADVLKCLGDNKKHMRECTL 960
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T LD+W+AA LDKMVPY+ +L D K G+EGRKDLFDWLSK ++ +S +A LLKP+
Sbjct: 961 TALDSWIAAAQLDKMVPYIIVSLGDQKTGSEGRKDLFDWLSKHVSKMSDPSEALPLLKPS 1020
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ ++ DKSS+VRKAAE+ + EILR GQE + +NLKD+ P LA++ ER+KL+ +
Sbjct: 1021 ASSLMDKSSEVRKAAESFMNEILRICGQEVVGRNLKDLPSPTLAIVSERLKLSTVHEGFS 1080
Query: 1075 --VSMGPTSKSSSKVPKSASNGVSKHG--------NRAISSRVIPTKGARPESIMSVQDF 1124
V M TS S +P A +KHG + +S R +P + + +++S QD
Sbjct: 1081 ESVKMVTTSMS---LPSKAGLKNNKHGLNDRGSNVGKLVSQRGLPARASV--TMVSTQDP 1135
Query: 1125 AVQSQALLNVKDSNKEDRERMV-VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTD 1183
A QSQAL N+KDSNKE+RER V VR+FKFE+PR EQI EL+ D+ K+FRED+ RL ++D
Sbjct: 1136 A-QSQALFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIDLFKHFREDVSLRLWNSD 1194
Query: 1184 FKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243
FK+Q+DG+E+LQKALPS K++IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+
Sbjct: 1195 FKRQIDGIELLQKALPSSWKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDILK 1254
Query: 1244 DEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSK 1303
D+ Y LTE+EAA+FLPCL+EKSGHNIEKVREKM EL KQ++N YS K +PYILEGLRSK
Sbjct: 1255 DQSYMLTEAEAAIFLPCLIEKSGHNIEKVREKMGELIKQMINIYSLPKLIPYILEGLRSK 1314
Query: 1304 NNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILG 1363
NNRTRIECVD+VG+ IDHHG E+ G +K+L VA+LTAERDGEIRKAALNTLAT YK LG
Sbjct: 1315 NNRTRIECVDIVGYFIDHHGTEVGGLMKNLPSVAALTAERDGEIRKAALNTLATAYKNLG 1374
Query: 1364 EDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSG 1423
+D+WRYVGKL+DAQ+SMLDDRFKWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG
Sbjct: 1375 DDVWRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSG 1434
Query: 1424 DV-SQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEG 1482
+V S+ V+G +++ R++G+++ H++R ++PR + S SGP DW EAL+I++ G PEQSVEG
Sbjct: 1435 EVVSRPVAG-SMISRDFGYADAHMDRHMVPRQIPSTSGPVDWREALEIVALGLPEQSVEG 1493
Query: 1483 MKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNT 1542
MKV+CHEL QA DPE +++++L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNT
Sbjct: 1494 MKVICHELTQAA-DPESTLLEDLIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNT 1552
Query: 1543 LMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNAD 1602
LMQTFQ KRLA+AV+E TLD+LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNA+
Sbjct: 1553 LMQTFQIKRLAHAVKEGTLDNLITELLLWLLDERVPLMDDGSQLLKALNVLMLKILDNAE 1612
Query: 1603 RTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDL 1662
RTSSFVVLINLLRPLDPSRWPSP ES A +NQ+FSDLVVKCLIKLTKVLQSTIY+VDL
Sbjct: 1613 RTSSFVVLINLLRPLDPSRWPSPTPTESLAVKNQKFSDLVVKCLIKLTKVLQSTIYEVDL 1672
Query: 1663 DRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMK 1722
DRILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPID +
Sbjct: 1673 DRILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDAE 1732
Query: 1723 PQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIF 1782
PQPIILAYIDLNL+TLAAARMLT +GP GQTHWGD+A+NNP +T+SADAQLKQELAAIF
Sbjct: 1733 PQPIILAYIDLNLQTLAAARMLTPSGPMGQTHWGDAASNNPNPSTHSADAQLKQELAAIF 1792
Query: 1783 KKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTP 1842
KKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ+EKNAAAGR P
Sbjct: 1793 KKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQVEKNAAAGRMP 1852
Query: 1843 SSVPMAT-------------PPPAALD-------NRIGGAIASKVLPPENPLSDQRNERF 1882
SS+P++T P P N + ++ + ++DQ+ +R+
Sbjct: 1853 SSLPLSTPPPIAAIPNPKFAPSPVHTKSIGKTDYNEDNASGETQPFRGQGAITDQQTDRY 1912
Query: 1883 GVTSGTLDAIRERMKSMQLAAAAGNPDPGN-RPLINMNDNVNNGLSSQSRSSDRASVENP 1941
++GTLDA+RERMKS+Q AAA G+ D RPL +MN S+ R E
Sbjct: 1913 HTSAGTLDALRERMKSIQ-AAAIGHFDGAQARPLASMNG------SNMVHGGTRLDGEPQ 1965
Query: 1942 AQGSVLPMDEKALSGLQARMERLKSGTIE 1970
+ ++ PMDE+ALSGLQARMERLKSG++E
Sbjct: 1966 QRSNIPPMDERALSGLQARMERLKSGSME 1994
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1972 | ||||||
| TAIR|locus:2058739 | 1978 | MOR1 "MICROTUBULE ORGANIZATION | 0.984 | 0.981 | 0.728 | 0.0 | |
| UNIPROTKB|E1B7K5 | 2032 | CKAP5 "Uncharacterized protein | 0.527 | 0.511 | 0.294 | 9.6e-174 | |
| UNIPROTKB|E2RSW0 | 2033 | CKAP5 "Uncharacterized protein | 0.565 | 0.548 | 0.285 | 4.6e-173 | |
| UNIPROTKB|Q14008 | 2032 | CKAP5 "Cytoskeleton-associated | 0.565 | 0.548 | 0.285 | 2.3e-171 | |
| UNIPROTKB|F1P0Y0 | 2036 | CKAP5 "Uncharacterized protein | 0.527 | 0.510 | 0.294 | 8.3e-169 | |
| MGI|MGI:1923036 | 2032 | Ckap5 "cytoskeleton associated | 0.529 | 0.513 | 0.288 | 9.6e-169 | |
| ZFIN|ZDB-GENE-051120-174 | 2033 | ckap5 "cytoskeleton associated | 0.508 | 0.492 | 0.295 | 3.5e-160 | |
| UNIPROTKB|F1M949 | 1778 | Ckap5 "Protein Ckap5" [Rattus | 0.405 | 0.449 | 0.292 | 5.6e-143 | |
| DICTYBASE|DDB_G0268616 | 2013 | cepJ "centrosomal protein 224 | 0.273 | 0.267 | 0.271 | 4.1e-122 | |
| UNIPROTKB|F1SIB5 | 1517 | F1SIB5 "Uncharacterized protei | 0.258 | 0.335 | 0.313 | 2.3e-114 |
| TAIR|locus:2058739 MOR1 "MICROTUBULE ORGANIZATION 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 7207 (2542.0 bits), Expect = 0., P = 0.
Identities = 1439/1975 (72%), Positives = 1614/1975 (81%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
PWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTVADSNAPVQ+KALD
Sbjct: 16 PWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTVADSNAPVQEKALD 75
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVME 134
ALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWVELEAVDVFLD ME
Sbjct: 76 ALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWVELEAVDVFLDTME 135
Query: 135 XXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
+DVMFQALSEFG+K+IPPKRILKMLPELFDHQDQNVRAS+KG+TLE
Sbjct: 136 KAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQDQNVRASAKGVTLE 195
Query: 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDV 254
LCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQDKE E S+ V
Sbjct: 196 LCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQDKEPEAEASSDVV 255
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS 314
G GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSERK+AVAELTKLAS
Sbjct: 256 GDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLAS 315
Query: 315 TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXX 374
TK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS SSRF
Sbjct: 316 TKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFSASSRFMLPVLLEK 375
Query: 375 XXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434
+V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS TL W+TFC+ETS
Sbjct: 376 LKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRSSTLTWLTFCLETS 435
Query: 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 494
+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPLERS+EKLDDVR+
Sbjct: 436 NKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPLERSLEKLDDVRKK 495
Query: 495 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554
KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASMLSGKRP +A AS
Sbjct: 496 KLSEMIAGSGGGDQAGTSSVTVQSSVGSTATGN-SDASFVRKSAASMLSGKRPAPSAQAS 554
Query: 555 KKGGPVKPSA-KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSA 613
KK G KP KKDGS + E SK E PEDVEP+EM LEEIE+RLGSL+ +TV QLKS+
Sbjct: 555 KKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGSLVKPETVSQLKSS 614
Query: 614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAAT 673
VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKN Y+++T
Sbjct: 615 VWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQQQVIEIITYISST 674
Query: 674 ATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPK 733
A KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FERL+KIMK+HKNPK
Sbjct: 675 AAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFERLFKIMKEHKNPK 734
Query: 734 VLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793
VLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATIKLLGALHKFVGPD
Sbjct: 735 VLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATIKLLGALHKFVGPD 794
Query: 794 IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGK 853
IKGFL DVKPALLSALD EYEKNPFEGT PK+ V+ LPREDIS K
Sbjct: 795 IKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVVKTSVSTSTSSGGLDS-LPREDISTK 853
Query: 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913
TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGLRGRL DSNKNLVM
Sbjct: 854 ITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGLRGRLLDSNKNLVM 913
Query: 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 973
TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL LD WL AVHLDKM+
Sbjct: 914 QTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAALDLWLGAVHLDKMI 973
Query: 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAE 1033
PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS AMTDKS+DVRKAAE
Sbjct: 974 PYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTAMTDKSADVRKAAE 1033
Query: 1034 ACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQVSMGPTXXXXXXX 1087
CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+ GP
Sbjct: 1034 GCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSKAMAGPVSKGVTKI 1093
Query: 1088 XXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVV 1147
NG K GNR SR +PTKG+ I SV D A+QSQALLN KDSNKEDRER+VV
Sbjct: 1094 SKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNTKDSNKEDRERVVV 1148
Query: 1148 RRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1207
RR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+LQKALPS+ K+IIE
Sbjct: 1149 RRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIE 1208
Query: 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267
VLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EAA+FLPCL EK GH
Sbjct: 1209 VLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEAAIFLPCLAEKLGH 1268
Query: 1268 NIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS 1327
NIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL+G+L++ G EI
Sbjct: 1269 NIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDLIGYLLETCGTEIG 1328
Query: 1328 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKW 1387
G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLTDAQKSM+DDRFKW
Sbjct: 1329 GLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLTDAQKSMIDDRFKW 1388
Query: 1388 KVRXXXXXXXXXXXXARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVE 1447
K + ARAALRRSVR++G ++AEQSGD+SQ+V GP R++YG SE +E
Sbjct: 1389 KAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLFPRQSYGISEQMLE 1448
Query: 1448 RSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVK 1507
R+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+NDPE S +DELVK
Sbjct: 1449 RTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQASNDPEESAIDELVK 1508
Query: 1508 DADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQXXXXXXXXXX 1567
DAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+AV+
Sbjct: 1509 DADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAHAVKEGTLESLITE 1568
Query: 1568 XXXXXXXERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPAS 1627
ERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LLRPLDPSRWPSPA+
Sbjct: 1569 LLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLLRPLDPSRWPSPAT 1628
Query: 1628 NESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGA 1687
E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ+LGMEEIRRRAGA
Sbjct: 1629 AEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQDLGMEEIRRRAGA 1688
Query: 1688 DDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTST 1747
DDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLNLETLAAARMLT+T
Sbjct: 1689 DDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLNLETLAAARMLTAT 1748
Query: 1748 GPGGQTHWGXXXXXXXXXXXXXXXXQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPK 1807
GP GQTHW QLKQEL AIFKKIGDKQT TIGLY+LY IT+ YPK
Sbjct: 1749 GPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIGLYDLYHITKSYPK 1808
Query: 1808 VDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAAL---DNRIGGAIA 1864
VDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++L I +
Sbjct: 1809 VDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSSLALPSPDIPSLSS 1868
Query: 1865 SKVLPPENPLSD-------QRNERFGVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLIN 1917
V P NP SD N GV +GTLDAIRERMK+MQLA++ +P ++PL+
Sbjct: 1869 LDVKPLMNPRSDLYTDDIRASNMNPGVMTGTLDAIRERMKNMQLASS----EPVSKPLMP 1924
Query: 1918 MNDNVN-NGLXXXXXXXXXXXVE-NPAQGSVLPMDEKALSGLQARMERLKSGTIE 1970
NDN++ N V +P VLPMDEKALSGLQARMERLK G++E
Sbjct: 1925 TNDNLSMNQQSVPPSQMGQETVHTHPV---VLPMDEKALSGLQARMERLKGGSLE 1976
|
|
| UNIPROTKB|E1B7K5 CKAP5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 9.6e-174, Sum P(3) = 9.6e-174
Identities = 319/1085 (29%), Positives = 522/1085 (48%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGMEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +G RP R +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINPVQLKELEEEWVKLPTGAPRPARFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEK 487
+ + + K + K + ++ +ND PEVRDAAF L K VG + P ++K
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 488 L--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544
L D ++ ++ E++ G +A + G + S A + K A++ G
Sbjct: 485 LKLDKIKECSEKVELVHGKKAGLAADKKDFK-PVPGRAAASGAAGDKD--TKDASAPKPG 541
Query: 545 KRPVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGS 600
P+ APA+K GGP K A + G+G T K E E VEP E+S+E E + +
Sbjct: 542 --PLKKAPAAKPGGPPKKGKPAAQGGTGGTGTKSKKAVETKEMVEP-ELSIEVCEEKASA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++PA + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 599 VLPATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ +++ D+K +A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACVLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXX-- 838
LLG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 777 TLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGE 836
Query: 839 ---------XXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ 889
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQ
Sbjct: 837 DGDEPDDGGSDAVDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAAIINEA-KFIQ 895
Query: 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949
P GEL L+GRL DSNK LV TL L +A AMGP +++ K + ++ LGD+K
Sbjct: 896 P-NIGELPTALKGRLNDSNKILVQQTLTILQQLAVAMGPNIKQHVKNLGIPVITVLGDSK 954
Query: 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 1009
++R L ++AW + + + + K R++L WL+++L L P
Sbjct: 955 NNVRSAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPT 1014
Query: 1010 AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILE 1065
L P + + D++ DVRK A+ + + G E + K LK + +LE
Sbjct: 1015 DLILCVPQLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLE 1074
Query: 1066 RIKLN 1070
+ K N
Sbjct: 1075 KAKAN 1079
|
|
| UNIPROTKB|E2RSW0 CKAP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 4.6e-173, Sum P(3) = 4.6e-173
Identities = 331/1160 (28%), Positives = 549/1160 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKLVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ + + K + K + ++ +ND PEVRDAAF L K VG + + + +D
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 491 VRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR- 546
++ +K+ SE + G A G ++ + ++ VP A+ + K + + K
Sbjct: 485 LKLDKIKECSEKVELVHGKKA-GLAADKKESK--PVPGRTATSGAAGDKDTKDISAPKPG 541
Query: 547 PVSAAPASKKGGPVK---PSAK-KDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602
P+ AP +K GGP K P+A GS + K E E VEP E+S+E E + +++
Sbjct: 542 PLKKAPTTKAGGPPKKGKPAAPGSTGSAGTKNKKGPETKEIVEP-ELSIEVCEEKASAVL 600
Query: 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXX 662
PA + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 601 PATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQM 660
Query: 663 XXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERL 722
+A F K + L G+ +++ D+K +A + +T +EA + E++
Sbjct: 661 KLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQV 719
Query: 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782
+ KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I L
Sbjct: 720 MSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITL 778
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXX---- 838
LG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 779 LGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGISKHSISGTDEGEDG 838
Query: 839 -------XXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP
Sbjct: 839 DEPDEVGTDVVDLLPRTEISDKITSELVSKISDKNWKIRKEGLDEVAGIINEA-KFIQP- 896
Query: 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951
GEL L+GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K +
Sbjct: 897 NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNN 956
Query: 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011
+R L ++AW + + + + K R++L WL+++L L P
Sbjct: 957 VRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDL 1016
Query: 1012 HLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERI 1067
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1017 ILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKA 1076
Query: 1068 KLNGASQ--VSMGPTXXXXXXXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
K N ++ S + S ++SS V P + + V A
Sbjct: 1077 KANMPAKPAASAKASSKPMGGSAPAKFQPSSAPVEDSVSSTVEPKPDPKKAKALGVSSKA 1136
Query: 1126 VQSQAL-LNVKDSNKEDRER 1144
+Q + K S KED ++
Sbjct: 1137 KSAQGKKVPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|Q14008 CKAP5 "Cytoskeleton-associated protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 2.3e-171, Sum P(3) = 2.3e-171
Identities = 332/1161 (28%), Positives = 546/1161 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +A RPTR +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALESVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 IKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ + + K + K + ++ +ND PEVRDAAF L K VG + + + +D
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 491 VRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR- 546
++ +K+ SE + G A G ++ + + +P A+ + K + + K
Sbjct: 485 LKLDKIKECSEKVELIHGKKA-GLAADKKEFK--PLPGRTAASGAAGDKDTKDISAPKPG 541
Query: 547 PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLI 602
P+ APA+K GGP K A G+G T K E E VEP E+S+E E + +++
Sbjct: 542 PLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVL 600
Query: 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXX 662
P + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 601 PPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQM 660
Query: 663 XXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERL 722
+A F K + L G+ +++ D+K +A + +T +EA + E++
Sbjct: 661 KLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQV 719
Query: 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782
+ KNPK SE + W+ +A+++FG S L +K I K T L ++ A R A I L
Sbjct: 720 VSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTAAITL 778
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX----- 837
LG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 779 LGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGISKHSTSGTDEGEDG 838
Query: 838 ------XXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891
LPR +IS K T LV + +WK+R E ++ V I+ +A K IQP
Sbjct: 839 DEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINDA-KFIQP- 896
Query: 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951
GEL L+GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K +
Sbjct: 897 NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNN 956
Query: 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011
+R L ++AW + + + + K R++L WL+++L L P
Sbjct: 957 VRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDL 1016
Query: 1012 HLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERI 1067
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1017 ILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKA 1076
Query: 1068 KLNGASQVSMGPTXXXXX---XXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDF 1124
K+N ++ + PT S ISS P + +
Sbjct: 1077 KVNMPAKPAP-PTKATSKPMGGSAPAKFQPASAPAEDCISSSTEPKPDPKKAKAPGLSSK 1135
Query: 1125 AVQSQAL-LNVKDSNKEDRER 1144
A +Q + K S KED ++
Sbjct: 1136 AKSAQGKKMPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|F1P0Y0 CKAP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 8.3e-169, Sum P(3) = 8.3e-169
Identities = 319/1084 (29%), Positives = 514/1084 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + L I D K + L KK V DSNA Q K L+
Sbjct: 11 PIDQKCEHKLWKARLNGYEEALKLFQKIDDEKSPEWSKYLGLIKKFVTDSNAVAQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAV--FMLWVELEAVDVFLDV 132
A +AY++ A AG+ EV + K +PK K V ++++E+E + +
Sbjct: 71 AALAYVENAHV-AGKTTGEVASGVVNKVFN-QPKARAKELGVDICLMYIEIEKGEAVQEE 128
Query: 133 MEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K L
Sbjct: 129 LLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESREKAVRDEAKLLA 188
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELIS 251
+E+ RWI +D ++ L + + KELE E V VS A + TR +R++Q EL +
Sbjct: 189 VEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKVSSAAPKQTRFLRSQQ--ELKAKFEQ 244
Query: 252 EDVGPGPSEESTAD---VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
+ G +E D P++D YEL++ V+IL+ L K F+E ++A KW ERK+A+
Sbjct: 245 QQAAGGDGDEGDDDEEEAVPQVDAYELLEAVEILSKLPKD-FYEKIEAKKWQERKEALEA 303
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFX 367
+ L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 304 VEVLVKNPKLESGDYADLVKVLKKVVGKDTNVMLVALAAKCLAGLASGLRKKFGQYAGHV 363
Query: 368 XXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 364 VPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFI 421
Query: 428 TFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLER 483
+ + + K + K + ++ +ND PEVRDA F L K G + P
Sbjct: 422 ARSFRHCTPSTLPKSLLKPFCAALLKHINDSAPEVRDAGFEALGTALKVAGEKAVNPFLA 481
Query: 484 SIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLS 543
++KL R + +E + G + G P++ S K AA+
Sbjct: 482 DVDKLKLDRIKECAEKVELVYGKKTGAAEKKEGKPVAGKAPALSGSAGDKEIKDAAAK-P 540
Query: 544 GKRPVSAAPASKKGGPVKPSAKKDGSGKQET-SKLTEAPEDVE--PSEMSLEEIESRLGS 600
G P AP K GGP K S +G +K + PE E SE+S+E E + +
Sbjct: 541 G--PQKKAPVVKPGGPPKKSKPAAAAGTGGAGAKGKKGPETKEIFESELSIEVCEEKAAA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++PA + QL S WKERL ++ ++ VE ++ + + LVR++ PGW E N
Sbjct: 599 VLPASCIQQLDSGNWKERLASMEEFQKAVELMERSEMPCQALVRMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ ++V D+K ++A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKVGDVKCGSNAKEAMTAIAEACQLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVVAMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXX 840
LLG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 777 TLLGVMYLYVGPPLRMFFEDEKPALLSQIDAEFEKMQGQTAPAPTRGISRHSGGSGDDGE 836
Query: 841 XXXX----------LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP 890
LPR DI K T LV + +WK+R E ++ V I+ +A K IQP
Sbjct: 837 EEEQEDVGNDVVDLLPRTDIGDKITAELVAKIGDKNWKIRKEGLDEVTSIINDA-KFIQP 895
Query: 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950
GEL L+ RL DSNK LV TL L +A+AMGP +++ K + ++ LGD+K
Sbjct: 896 -NIGELPAALKSRLNDSNKILVQQTLSILQQLATAMGPNIKQHVKNLGIPVITVLGDSKN 954
Query: 951 HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
++R L ++AW + + + + K R++L WL+ +L L P
Sbjct: 955 NVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLADKLPTLRSVPSD 1014
Query: 1011 AHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILER 1066
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1015 LLLCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGFEKMAKATGKLKPTSKDQVLAMLEK 1074
Query: 1067 IKLN 1070
K N
Sbjct: 1075 AKAN 1078
|
|
| MGI|MGI:1923036 Ckap5 "cytoskeleton associated protein 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1095 (390.5 bits), Expect = 9.6e-169, Sum P(3) = 9.6e-169
Identities = 314/1089 (28%), Positives = 516/1089 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + +++VE+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +D+ VR +K +
Sbjct: 130 LKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLFAI 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RW +D VK L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 190 EIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P++D YEL+D V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEK 487
+ + + K + K + ++ +ND PEVRDAAF L K VG + P ++K
Sbjct: 425 RHCTSSTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKSVNPFLADVDK 484
Query: 488 L--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544
L D ++ ++ E++ G +AT ++ G + S A + K + G
Sbjct: 485 LKLDRIKECSEKVELVHGKKSGLATEKKESK-PLPGRAAASGAAGDKD--TKDVSGPKPG 541
Query: 545 KRPVSAAPASKKGGPVKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGS 600
P+ P +K GGP K + GS T K E E VEP E+S+E E + +
Sbjct: 542 --PLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGLETKEIVEP-ELSIEVCEEKASA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++P + L S+ WKERL + ++ VE ++ + + LV+++ PGW E N
Sbjct: 599 VLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMPCQALVKMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ +++ D+K +A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXX 840
LLG ++ +VGP ++ D KPALLS +DAE++K + P + +
Sbjct: 777 TLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGIAKHSTSATDEGE 836
Query: 841 XXXX-----------LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ 889
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQ
Sbjct: 837 DGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQ 895
Query: 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949
P GEL L+GRL DSNK LV TL L +A AMG + + K + ++ LGD+K
Sbjct: 896 P-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGANIRQHVKNLGIPVITVLGDSK 954
Query: 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 1009
++R L ++AW + + + + K R++L WL+++L L P
Sbjct: 955 NNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPT 1014
Query: 1010 AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILE 1065
L P + + D++ DVRK A+ + + G E + K LK + +LE
Sbjct: 1015 DLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLE 1074
Query: 1066 RIKLNGASQ 1074
+ K N S+
Sbjct: 1075 KAKANMPSK 1083
|
|
| ZFIN|ZDB-GENE-051120-174 ckap5 "cytoskeleton associated protein 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 3.5e-160, Sum P(3) = 3.5e-160
Identities = 314/1064 (29%), Positives = 515/1064 (48%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + L + + + LG L KK V +SNA Q K L+
Sbjct: 11 PIDQKCEHKVWKARLSGYEEALKLFQKLDEKSPEWSKYLG-LIKKFVTESNAVAQLKGLE 69
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEK--AQAVFMLWVELEAVDVFLDV 132
A +A+++ A AG+ EV + K +PK K + ++++E+E +V D
Sbjct: 70 AALAFIENAHV-AGKTVGEVVSGVVNKVFN-QPKARAKELGTEICLMYIEIEKAEVVQDE 127
Query: 133 MEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ I+ + +AL EFG+KII K ++K+LP+LF+ +++ VR +K L
Sbjct: 128 LIKGLDNKNPKIVVACIEALRKALCEFGSKIITLKPVVKVLPKLFESREKAVRDEAKLLA 187
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQD---KELGQE 248
+E+ RWI +D ++ L + + KELE E V V TA + R +R++QD K Q+
Sbjct: 188 VEIYRWI-RDALRAPL-QNINSVQLKELEEEWVKVPATAPKQIRFLRSQQDLKAKFEQQQ 245
Query: 249 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
D G EE V ++D YEL++ V+IL+ L K F+E ++A KW ERK+A+
Sbjct: 246 AAGGDEADGDDEEVAEAV--QVDAYELLEAVEILSKLPKD-FYEKIEAKKWQERKEALEA 302
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFX 367
+ L ++ GD+ ++ R LKK+I D N+ + A + + LA GLR F +
Sbjct: 303 VEALTKNPKLESGDYGDLVRALKKVIGKDANVMLVSMAAKCLAGLATGLRKKFGTYAGLV 362
Query: 368 XXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
V ++L + + A+ L ++ EDV + NK P ++ ++
Sbjct: 363 VPTILEKFKEKKPQVVQALQEAIDAVFLTTTLQ--NISEDVLAVMDNKNPSIKQQASLFL 420
Query: 428 TFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486
+ + + K V K + ++ +ND PEVRDAAF L K +G + + +
Sbjct: 421 ARSFRHCTPSTLPKSVLKPFCAAFLKQVNDSAPEVRDAAFEALGTAMKVIGEKAVNPFLT 480
Query: 487 KLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTSGGSVPSVEA-SESSFVRKSAA 539
+D ++ +K+ E +I GG G + + + + P VEA +++S K +A
Sbjct: 481 DVDKLKLDKIKECADKVELIGKKGG----GGGEKKERPAAKASPPVEAPAKTSGPPKKSA 536
Query: 540 SMLSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
P AA KKG P PSAK + K E E +E +E+S E E +
Sbjct: 537 -------PAKAAGPPKKGKPAAAPSAK--------SKKAPETKEIIE-TELSPEVCEEKA 580
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXX 658
+++PA + L SA WKERL ++ ++ VE + + + LV+++ PGW E N
Sbjct: 581 AAVLPASCMQLLDSANWKERLASMEEFQKAVEQMDKSEMPCQALVKMLAKKPGWKETNFQ 640
Query: 659 XXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
L A +F K ++ L G+ +++ D+K +A + LT EA +
Sbjct: 641 VMQMKLSIVG-LVAQKGQFSKTSALVVLDGLVDKIGDVKCGGNAKEALTAIGEACSLPWT 699
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
E++ I KNPK +E + W+ +A+++FG + + +K I+ K T L ++ A R +
Sbjct: 700 AEQVVSIAFAQKNPKNQAETLNWLANAMKEFGFAGINVKGFINNVK-TALGATNPAVRTS 758
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP----KKT------- 827
I LLG ++ ++G ++ F D KPALLS +DAE+ K + P KK
Sbjct: 759 AIALLGVMYLYMGAPLRMFFEDEKPALLSQIDAEFVKMQGQSPPAPTRGAKKAGAEEDGD 818
Query: 828 VRAXXXXXXXXXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V LPR DIS K T +V + +WK+R E ++ V ++ EA K
Sbjct: 819 VADEDEADGGAGDIMDMLPRTDISDKITSEMVSKISDKNWKIRKEGLDEVAAVISEA-KF 877
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
IQ A GEL L+GRL DSNK LV TL L +A AMGP++++ K + ++ LGD
Sbjct: 878 IQ-ANIGELPMALKGRLNDSNKLLVQQTLNILQQIAIAMGPSLKQHVKNLGIPVVTVLGD 936
Query: 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007
+K ++R + L+AW+ + + + + K R++L WLS++L L
Sbjct: 937 SKPNVRATAMATLNAWVEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLSEKLPTLRTV 996
Query: 1008 PDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
P L P + D+S DVRK A+ + + G + + K
Sbjct: 997 PADLMLCVPHLYTCLEDRSGDVRKKAQDALPTFMMHLGFDKMTK 1040
|
|
| UNIPROTKB|F1M949 Ckap5 "Protein Ckap5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 5.6e-143, Sum P(3) = 5.6e-143
Identities = 244/834 (29%), Positives = 395/834 (47%)
Query: 265 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT 324
D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L + R+ GD+
Sbjct: 6 DEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEGLVRSPRLEAGDYA 64
Query: 325 EVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVA 383
E+ + LKK++ D N+ + A + + LA GLR F + V
Sbjct: 65 ELVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVV 124
Query: 384 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-V 442
++L + + A+ L ++ EDV + NK P ++ T ++ + + + K +
Sbjct: 125 QALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSFRHCTSSTLPKSL 182
Query: 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502
K + ++ +ND PEVRDAAF L K VG + + + +D ++ +K+ E
Sbjct: 183 LKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKTVNPFLADVDKLKLDKIKE--CS 240
Query: 503 SGGDVATGTSSARVQTSGGSVPSV-EASESSFVRKSAASMLSGKRP--VSAAPASKKGGP 559
++ G S S P A+ S +SG +P + APA+K GGP
Sbjct: 241 EKVELVHGKKSGLAAEKKESKPLPGRAAASGAAGDKDTKDVSGPKPGPLKKAPATKAGGP 300
Query: 560 VKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW 615
K + GS T K E E EP E+S+E E + +++P + L S+ W
Sbjct: 301 PKKGKTTAPGGSASSGTKNKKGLETKEIAEP-ELSIEVCEEKASAVLPPTCIQLLDSSNW 359
Query: 616 KERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATAT 675
KERL + ++ VE ++ + + LV+++ PGW E N +A
Sbjct: 360 KERLACMEEFQKAVELMERSEMPCQALVKMLAKKPGWKETNFQVMQMKLHIVALIAQKGN 419
Query: 676 KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
F K + L G+ +++ D+K +A + LT +EA + E++ + KNPK
Sbjct: 420 -FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNPKNQ 478
Query: 736 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795
SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP ++
Sbjct: 479 SETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGPSLR 537
Query: 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX-----------XXXXXXX 844
D KPALLS +DAE++K + P + +
Sbjct: 538 MIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGISKHSTSGTDEGDDGDEPGDGSNDVVDL 597
Query: 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+GRL
Sbjct: 598 LPRVEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALKGRL 655
Query: 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964
DSNK LV TL L +A AMGP V++ K + IL LGD+K ++R L ++AW
Sbjct: 656 NDSNKILVQQTLNILQQLAVAMGPNVKQHVKNLGIPILTVLGDSKNNVRAAALATVNAWA 715
Query: 965 AAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTD 1023
+ + + + K R++L WL+++L L P L P + + D
Sbjct: 716 EQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPMLRSTPTDLILCVPHLYSCLED 775
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLNGASQ 1074
++ DVRK A+ + + G E + K LK + +LE+ K N S+
Sbjct: 776 RNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKANMPSK 829
|
|
| DICTYBASE|DDB_G0268616 cepJ "centrosomal protein 224 kDa" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 4.1e-122, Sum P(6) = 4.1e-122
Identities = 153/563 (27%), Positives = 266/563 (47%)
Query: 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
EDR+ HKNWK R +L + + E GP FKK +AD N Q++AL+ L
Sbjct: 12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPL 71
Query: 77 IAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEX 135
A++ D ++A + K RP+ EK +L +E ++ + ++ +
Sbjct: 72 SAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLK 130
Query: 136 XXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195
+ + QAL FG K IP K ILK F+++D+ +R + L +E+
Sbjct: 131 GTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEI 190
Query: 196 CRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISEDV 254
RWIGK + ++ E + K L+ + + + A P + R+E K L S+ +
Sbjct: 191 YRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPAVPLKYTRSEAAKALANA--SKGI 247
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-TKLA 313
P +V EID Y L+ V+IL L S F+EG++A KW ER + + +L T L
Sbjct: 248 QAKP------EVVEEIDPYSLMTAVNILPKLT-SEFYEGLQAKKWQERSEQMDKLVTILT 300
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXX 373
+T +I DF+E+C+ LKK++ DVN+ + +A+ +IG LA LR F+ +
Sbjct: 301 NTPKIETADFSELCKALKKILADVNVMIVQKAVVSIGLLADSLRGGFTSYVKPFITPILE 360
Query: 374 XXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433
+V +S+ T+ ++ ++L D+++++ ++++KVP ++ L ++ I
Sbjct: 361 KFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTATMQSKVPQIKQEVLVFICNSITN 419
Query: 434 SSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492
+ K A + KV K I ME LND +RD A AA+ +G R + + ++D ++
Sbjct: 420 TKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAFAALGGIIGERAMTPYLNQIDPIK 479
Query: 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552
K+ + + VAT + + + ++ SS +K AA+ + K + P
Sbjct: 480 AKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLPVSSSNKKPAAATGNSKSSSTTTP 535
Query: 553 ASKKGG----PVKPSAKKDGSGK 571
+ P PS+ D K
Sbjct: 536 TGRSSNSSPLPPPPSSSDDIKNK 558
|
|
| UNIPROTKB|F1SIB5 F1SIB5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 2.3e-114, Sum P(3) = 2.3e-114
Identities = 167/533 (31%), Positives = 258/533 (48%)
Query: 557 GGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 612
GGP K A + G+G T K E E VEP E+S+E E + +++PA + L S
Sbjct: 2 GGPPKKGKPAAQGGTGSTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVLPAPCIQLLDS 60
Query: 613 AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAA 672
+ WKERL + ++ VE + + + LVR++ PGW E N +A
Sbjct: 61 SNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQMKLHIVALIAQ 120
Query: 673 TATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP 732
F K + L G+ +++ D+K +A + LT +EA + E++ + KNP
Sbjct: 121 KGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNP 179
Query: 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792
K SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP
Sbjct: 180 KNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGP 238
Query: 793 DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXX-------- 844
++ F D KPALLS +DAE+EK + P + +
Sbjct: 239 SLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGEDGDEPDDGGNDV 298
Query: 845 ---LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+
Sbjct: 299 VDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALK 356
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K ++R L ++
Sbjct: 357 GRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNNVRAAALATVN 416
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA- 1020
AW + + + + K R++L WL+++L L P L P +
Sbjct: 417 AWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDLILCVPHLYSC 476
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLN 1070
+ D++ DVRK A+ + + G E + K LK + +LE+ K N
Sbjct: 477 LEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKAN 529
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94FN2 | MOR1_ARATH | No assigned EC number | 0.7695 | 0.9918 | 0.9888 | yes | no |
| Q5N749 | MOR1_ORYSJ | No assigned EC number | 0.7199 | 0.9863 | 0.9739 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1972 | |||
| pfam12348 | 228 | pfam12348, CLASP_N, CLASP N terminal | 0.001 | |
| pfam02985 | 31 | pfam02985, HEAT, HEAT repeat | 0.003 |
| >gnl|CDD|221541 pfam12348, CLASP_N, CLASP N terminal | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 30/187 (16%)
Query: 299 WSERKDAVAELTKL----ASTKRIAPGDFTEVCRTLK----KLITDVNIAVAVEAIQAIG 350
W R+ A+ +L + A P +F + L K ++ + ++ +
Sbjct: 21 WDAREKAIIKLRSIIKGNAPED--YPSEFLAGLKQLLEGILKALSSLRTTLSSTGCHLLK 78
Query: 351 NLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 410
LA L H + LLP LL+ + K ++++ Q + + V ++
Sbjct: 79 ELAIQLGHHLDPFAEILLPTLLKLCGDTKKIISQNANQAVADILSN-----VSYTPRLEL 133
Query: 411 SV-------KNKVPLVRSLTLNW-----VTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458
KN P R + W + S + Y + L D
Sbjct: 134 QHISAALQDKNVQP--REYSAIWLKILLIRHGHHKSHIEHHGGL-DLYEKSLKKGLEDAN 190
Query: 459 PEVRDAA 465
P VR+ A
Sbjct: 191 PGVRETA 197
|
This region is found at the N terminal of CLIP-associated proteins (CLASPs). CLASPs are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules. In yeast, Drosophila, and Xenopus, a single CLASP orthologue is present. In mammals, a second paralogue (CLASP2) exists which has some functional overlap with CLASP1. Length = 228 |
| >gnl|CDD|202500 pfam02985, HEAT, HEAT repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.003
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSV 476
+P+ +E LND PEVR+AA L A+A+ +
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALAEVL 31
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1972 | |||
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.97 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.86 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.86 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.86 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.73 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.66 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.63 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.63 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.59 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 99.54 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.46 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.41 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.38 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.35 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.33 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.29 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 99.16 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.13 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.11 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.1 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.05 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.9 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.66 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.65 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.64 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.56 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.54 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.53 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.47 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.43 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.35 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.21 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.79 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.48 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.35 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.33 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.29 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.22 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.13 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.12 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.1 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 97.09 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.04 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 96.93 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 96.93 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.9 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 96.8 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.8 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.76 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.71 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.65 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.6 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 96.42 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.41 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 96.37 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.34 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.33 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.33 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.33 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 96.31 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.22 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 96.11 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.04 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.96 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.92 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 95.88 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 95.77 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.7 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 95.66 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.61 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 95.57 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 95.42 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 95.34 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 95.34 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.24 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 95.08 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 94.83 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 94.71 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 94.64 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 94.63 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.58 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 94.48 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 94.41 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 94.27 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 94.23 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 93.89 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 93.75 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 93.74 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 93.73 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 93.59 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 93.49 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 93.4 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.18 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 92.97 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 92.82 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 92.48 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 92.47 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 92.29 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 92.28 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 92.12 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 91.67 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 91.51 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 91.37 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 91.01 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 90.92 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 90.91 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 90.88 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 90.85 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 90.78 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 90.41 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 90.25 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 89.99 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 89.93 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 89.89 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 89.86 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 89.85 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 89.28 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 89.05 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 89.02 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 88.88 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 88.65 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 88.25 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 88.24 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 88.15 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 88.08 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 87.78 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 87.59 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 86.5 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 86.35 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 86.0 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 85.46 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 85.02 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 85.0 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 84.67 | |
| KOG1087 | 470 | consensus Cytosolic sorting protein GGA2/TOM1 [Int | 84.67 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 84.66 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 84.41 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 84.06 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 83.96 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 83.91 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 83.65 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 83.33 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 83.23 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 82.9 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 82.64 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 82.21 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 82.18 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 82.01 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 81.94 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 81.53 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 81.33 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 81.15 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 80.61 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 80.6 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 80.52 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 80.42 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 80.16 |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=531.23 Aligned_cols=745 Identities=25% Similarity=0.300 Sum_probs=568.7
Q ss_pred HHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHH-hcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHH
Q 000167 607 VGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLC 685 (1972)
Q Consensus 607 ~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L-~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~i 685 (1972)
...+.+..|+.|.++...+...++.....+.....+++.. ...++|+..|++|..-.+.++..-.
T Consensus 11 ~~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~-------------- 76 (815)
T KOG1820|consen 11 DSELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKR-------------- 76 (815)
T ss_pred chhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhccccc--------------
Confidence 3347888999999999999998888654433334444433 2335678888777665554443211
Q ss_pred HHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHh
Q 000167 686 LLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKD 765 (1972)
Q Consensus 686 l~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~ 765 (1972)
..+.| ...+++..+....+...+++.++.. ...|.||....++..+..++.+||...++++.+++.+..
T Consensus 77 -----~~~~~-----~~~~~~~~i~~~~~~~~~~e~~~~~-~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~ 145 (815)
T KOG1820|consen 77 -----VNIRD-----TKTQSLLRIGKLEDIKEVVEAAKAL-LSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGS 145 (815)
T ss_pred -----ccccC-----cchhHHHHHHHhhhhHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcc
Confidence 11122 2222333333333444555555555 478999999999999999999999988888888877665
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhh-cccHHHHHHHHHHHhcCCCC----CCCC-----------------
Q 000167 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA-DVKPALLSALDAEYEKNPFE----GTVV----------------- 823 (1972)
Q Consensus 766 ~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~-~lkp~ll~~Le~efek~~~~----~~~~----------------- 823 (1972)
+ . +.+||.++.++++.+|++.|..+..++. .-.+.++..+...+.+.... ..+.
T Consensus 146 l-~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~ 221 (815)
T KOG1820|consen 146 L-A---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQL 221 (815)
T ss_pred c-c---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcc
Confidence 4 3 8899999999999999999998887663 33344455554444333210 0000
Q ss_pred --CCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHH
Q 000167 824 --PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (1972)
Q Consensus 824 --p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~ 901 (1972)
+.+.++...+......+..|.+||+||+.++++.|...+.+++|++|+||++.+..++++....+....++.+...++
T Consensus 222 ~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~k 301 (815)
T KOG1820|consen 222 EKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLK 301 (815)
T ss_pred cccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHH
Confidence 000000000000001134578999999999999999999999999999999999999997643455666678888888
Q ss_pred hccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000167 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1972)
Q Consensus 902 ~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~ 981 (1972)
.++.|+|.+|+..|+.+|+.||.+||..|.+|...++|.|+.+++|+|+.+|+++..|+++|+..+++..+.+.+.++++
T Consensus 302 i~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk 381 (815)
T KOG1820|consen 302 IRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALK 381 (815)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhccCCCC----CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCCh
Q 000167 982 DAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1057 (1972)
Q Consensus 982 ~~~~~~~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~ 1057 (1972)
++ ||+.|.+++.|+.+++...... .....+++.+++..+|++.+||++|.+++.++|+++|++.+.+++.++++
T Consensus 382 ~k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 382 GK--NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred CC--ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 87 7999999999999999988741 23344455589999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCcCCCCCCCCCCCCcccccchhhhhhhhcc
Q 000167 1058 PALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVS-----KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL 1132 (1972)
Q Consensus 1058 ~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1132 (1972)
..+..+.+.+.+.-.....+.+++++..+.....+..++ .......++..+|.+.+...++ ...+. ....+.+
T Consensus 460 ~~~~~~~E~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~~-~~~~~-~~~~~~~ 537 (815)
T KOG1820|consen 460 QDIKPKEEKLKPLLHFLAAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANSS-RKIPE-AAEAPKL 537 (815)
T ss_pred chhhhhhhhccccccccccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCcccccccc-cCCcc-hhhcccc
Confidence 644444444433211111222222221110000000000 0000001111112121111100 01111 1111211
Q ss_pred ccCCCChHHhh----hhhcccccccCCChhhHHHHHHHHHHhhhHHHHHhhcCccHHHHHHHHHHHHHhcCcchhhHHHH
Q 000167 1133 NVKDSNKEDRE----RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV 1208 (1972)
Q Consensus 1133 ~~~~~~k~~R~----~~~~~k~~f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~~~al~~L~~~l~~~~~~~i~~ 1208 (1972)
.+..+++|. +..+.+|.+..+..+..+ +|...++......||+.||+.|.++++.++.....+..++.++
T Consensus 538 --~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ 611 (815)
T KOG1820|consen 538 --QLSLKEQRVVLGTRRKVSPKTVVAPVDDKKE----PSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSI 611 (815)
T ss_pred --ccccccchhhhhhhhccCccccccchhhhhc----ccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchH
Confidence 344567775 466778998877765544 4778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhCCChHHHHHHHHHHHHHHhhcCC
Q 000167 1209 LDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS 1288 (1972)
Q Consensus 1209 lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~Gd~k~~vr~~v~~il~~~~~v~~ 1288 (1972)
.|++++|+++||+++|+.+..+.++++...|+.+...++.++..|...|.|++..+.|..++.+++.++.+.+....++.
T Consensus 612 ~~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s 691 (815)
T KOG1820|consen 612 QDLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLS 691 (815)
T ss_pred HhhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHhhhcCCchHHHHHHHHHHHHHHHHhCHHHHH
Q 000167 1289 ATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWR 1368 (1972)
Q Consensus 1289 ~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~~ 1368 (1972)
+.+..|++.+++..||.++|.+|++.+..++..-|.....-.+.+..++....+.|..+|.++.+++...|.+.|+.+|+
T Consensus 692 ~~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (815)
T KOG1820|consen 692 VLMMVPSLREALELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWK 771 (815)
T ss_pred ccccchhhHhhccccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHH
Confidence 99999999999999999999999999999999999876444567899999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHhHHHHHHhhhh
Q 000167 1369 YVGKLTDAQKSMLDDRFKWKVR 1390 (1972)
Q Consensus 1369 ~vg~ls~~~~s~l~er~kr~~~ 1390 (1972)
..+.+.+.++++++.+|++..+
T Consensus 772 ~~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 772 ISILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred HHHHhhHHHhhhHHHhcCcccc
Confidence 9999999999999999998654
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=440.59 Aligned_cols=747 Identities=20% Similarity=0.232 Sum_probs=499.8
Q ss_pred hcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh-hhHHHHHHH
Q 000167 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR-YAKEVCDAI 98 (1972)
Q Consensus 20 l~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~-~~~~v~~~L 98 (1972)
+..+.|+.|.++|. +++.|+|...|+.+ .++..|....+..... -..-.+-..
T Consensus 14 l~~~~w~~~~~~~~-------------------------ql~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~~ 67 (815)
T KOG1820|consen 14 LCSQSWKNRLEAWK-------------------------QLLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLSF 67 (815)
T ss_pred hhhhhhhhhHHHHH-------------------------HHhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeeccc
Confidence 77777777777665 45678899999999 8888887776543221 122234445
Q ss_pred HHhhcC-CChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhh
Q 000167 99 AAKCLT-GRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177 (1972)
Q Consensus 99 veK~l~-~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll 177 (1972)
.++||. -++.+++...++++.+-..++.+.+++.+...+.-|.||..++++..+..++.+||...++++.+++.+..++
T Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~ 147 (815)
T KOG1820|consen 68 GLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA 147 (815)
T ss_pred hhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc
Confidence 678887 4788899999998888777888999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCC-CCCCcchhhhhhHhhhhhccccCCCC
Q 000167 178 DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVGP 256 (1972)
Q Consensus 178 ~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~-~~P~R~~rs~~~~~~~~~a~~~~~~~ 256 (1972)
|++||.++..++++||||+|.. ++.+++....+.++.++...+.+.... ....|+.-+.+..........+..+.
T Consensus 148 ---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~ 223 (815)
T KOG1820|consen 148 ---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEK 223 (815)
T ss_pred ---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccc
Confidence 9999999999999999999985 556655444444444444443332211 01111111111000000000000000
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCC--CCCCChHHHHHHHHH
Q 000167 257 GPS--EESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLKK 332 (1972)
Q Consensus 257 ~~~--~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~k--i~~~~y~~l~~~L~k 332 (1972)
... ....+.....+|.||+.+++||+++++ .+|...+.+++|++|+|||+.+..++..++ +..+.++.+...++.
T Consensus 224 ~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki 302 (815)
T KOG1820|consen 224 PERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKI 302 (815)
T ss_pred cccccccccCCCCCCccccccCchhhhhhhcC-hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHH
Confidence 000 001111122278999999999999999 699999999999999999999999886666 444556666666666
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh
Q 000167 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1972)
Q Consensus 333 ~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l 412 (1972)
+..|+|++|+..|++||+.||.+||..|.+|+..++|.+|+++||+|..+++++..|+++++.. +++.++.+.|..++
T Consensus 303 ~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~l 380 (815)
T KOG1820|consen 303 RLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEAL 380 (815)
T ss_pred hccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHh
Confidence 7779999999999999999999999999999999999999999999999999999999999984 89999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChh-HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHH
Q 000167 413 KNKVPLVRSLTLNWVTFCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDV 491 (1972)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~-~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~ 491 (1972)
++|||++|.+|..|+.+++...++. .....++.++|.+++..+|++++||.||.++++++++++|++.++.++..+++.
T Consensus 381 k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 381 KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ 460 (815)
T ss_pred cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 9999999999999999999988743 233567999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccc-cccccccccCCCCCCCCCCCCCCCCCCC-CCC-----
Q 000167 492 RRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSF-VRKSAASMLSGKRPVSAAPASKKGGPVK-PSA----- 564 (1972)
Q Consensus 492 ~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~-v~~~~~s~~~~~~P~~~~~~s~k~~~~k-~g~----- 564 (1972)
-+..+.|.+...-.......++..++. +....+.. ++.... ....++.+. .++.|++ +..
T Consensus 461 ~~~~~~E~~~p~~~~~~~~~~~~~a~~-------~~~~~~~~~~~~~~~---~~~~~p~~~---~a~vps~~ss~~~~~~ 527 (815)
T KOG1820|consen 461 DIKPKEEKLKPLLHFLAAPKEKSSAPD-------PQVEKLKKVVKVGLS---NFSGLPKNS---AASVPSKLSSANSSRK 527 (815)
T ss_pred hhhhhhhhccccccccccCCCcCCCCC-------ccccccceecccccc---cCCCCCCCc---cccCCCcccccccccC
Confidence 444555544321000000000101110 00000000 000000 000000000 0001111 000
Q ss_pred CCCC--CCCCCCC-CCCCCC-----CCCCCC-CCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccc-
Q 000167 565 KKDG--SGKQETS-KLTEAP-----EDVEPS-EMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN- 634 (1972)
Q Consensus 565 ~~~~--~~~~~~s-~~~~~~-----~~~~~~-~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~- 634 (1972)
.+.. .+...++ +..... ..+... ....++..+.....++......+.+.+.+.-.++++.+...-.+...
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~ 607 (815)
T KOG1820|consen 528 IPEAAEAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKE 607 (815)
T ss_pred CcchhhccccccccccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccc
Confidence 0000 0000000 000000 000000 11223444334455667778889999999999999988865444222
Q ss_pred cchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC----CchhhHHHHHHHHHhhhcchh--hhHHHHHHHHH
Q 000167 635 LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK----FPKKCVVLCLLGISERVADIK--TRAHAMKCLTT 708 (1972)
Q Consensus 635 ~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~----~~~~~~~~il~~LveKlgd~K--~r~~a~~~L~~ 708 (1972)
.......++.|+.. +|.|+|..+....++++......... ..........+-+..+.|..+ .+..-..+...
T Consensus 608 ~~~~~~~~l~~~~l--r~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~ 685 (815)
T KOG1820|consen 608 YTSIQDLLLEWLVL--RFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEA 685 (815)
T ss_pred cchHHhhhhHHHHH--HhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhh
Confidence 21223456667643 68999999999888888765543211 010111111122222444322 23333334444
Q ss_pred HHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 000167 709 FSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (1972)
Q Consensus 709 l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~ 788 (1972)
..+..+.......+.+.+ ..++-.++.+++..+..++..-|...+....+....... ..+.+..+|.++..++...|.
T Consensus 686 s~~v~s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 763 (815)
T KOG1820|consen 686 SFEVLSVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALL-VKASDGKSSSKVKKTSWKPFD 763 (815)
T ss_pred hhhhccccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhccccc-ccccchhhhhhhhcccccccc
Confidence 455555555556666664 678888899999888877776666433222233333333 677888999999999999999
Q ss_pred hhChhHHhhhhcccHHHHHHHHHHHhcC
Q 000167 789 FVGPDIKGFLADVKPALLSALDAEYEKN 816 (1972)
Q Consensus 789 ~~G~~l~~~L~~lkp~ll~~Le~efek~ 816 (1972)
+.|+....+.....+.+...++..|.+-
T Consensus 764 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 791 (815)
T KOG1820|consen 764 FLPDPSWKISILQADTDKSRIEKMFPKE 791 (815)
T ss_pred cccchHHHHHHHhhHHHhhhHHHhcCcc
Confidence 9999998888888899999999998764
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-26 Score=285.13 Aligned_cols=922 Identities=17% Similarity=0.187 Sum_probs=574.1
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCCC-CchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHH
Q 000167 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDP-KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (1972)
Q Consensus 15 pl~erl~~k~WK~R~~ayeel~~~~~~~~d~-~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~ 93 (1972)
-|.|++++++-..|.+|..+|++.++...-. ++..+.+...++.|.+.|+|..||..|+.|+..++.+.++. ....
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHHH
Confidence 6789999999999999999999999863111 12235566788899999999999999999999999887653 4667
Q ss_pred HHHHHHHhhcCCChhHHHHH-HHHHHHHHhhh------hhhhHHHHHHHHhhcCChh------hHHHHHHHHHHHHHHhC
Q 000167 94 VCDAIAAKCLTGRPKTVEKA-QAVFMLWVELE------AVDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSEFG 160 (1972)
Q Consensus 94 v~~~LveK~l~~k~~~k~~a-~~~ll~~~E~~------~~~~v~~~L~~~~~~KnpK------v~~~~l~~l~~~l~~fG 160 (1972)
++..|+.+.++++.+.|+.+ +.+.+...++. -...|+..+++.+..-+-+ +.+++++++...+.+||
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 88888888888899999986 88888888874 1246788888777766665 89999999999999999
Q ss_pred CCccChh-HHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhH---HHhhhC-hHHHHHHHHHHH---Hhc---cC
Q 000167 161 AKIIPPK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT---ILFEKM-RDTMKKELEVEL---VNV---SG 229 (1972)
Q Consensus 161 ~~~~~~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~---~l~~~L-k~~q~keLe~~f---~k~---~~ 229 (1972)
.-..+.. .+++.+..-++.....||+.|+.+++.+..+++.++... .|.++| ++.|..++..-+ ..+ .|
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 9776664 489999999999999999999999999998888654322 222333 233333332221 111 11
Q ss_pred C--------CCCC--cchhhh--hhHhhhh------hc-----cccCC--------------CCCCCCCCCCCCCCCCCC
Q 000167 230 T--------ARPT--RKIRAE--QDKELGQ------EL-----ISEDV--------------GPGPSEESTADVPPEIDE 272 (1972)
Q Consensus 230 ~--------~~P~--R~~rs~--~~~~~~~------~a-----~~~~~--------------~~~~~~~~~~~~~~~iD~ 272 (1972)
. ..|. .|..+. .+++..+ |+ |.+.. ..+|+-..+.+ +|.|.
T Consensus 246 ~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~--eDed~ 323 (1233)
T KOG1824|consen 246 HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE--EDEDA 323 (1233)
T ss_pred chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc--cchhh
Confidence 1 1110 011000 0111100 00 11100 01111000000 00000
Q ss_pred CCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHH
Q 000167 273 YELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGN 351 (1972)
Q Consensus 273 ~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~ 351 (1972)
...-|..| . ..++-|+..+|-.|+.|++|++.+.+++ +...+.+.-|..+.+.|..+++|-.-+|....+++.-.
T Consensus 324 ~~~ed~eD--d--e~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ 399 (1233)
T KOG1824|consen 324 MFLEDEED--D--EQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIA 399 (1233)
T ss_pred hhhhcccc--c--hhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 00000000 0 0025677788999999999999999976 56667777788999999999996666677777776666
Q ss_pred HHHHhhh----------------c-----hhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--c--CCChHhHHH
Q 000167 352 LARGLRT----------------H-----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--G--CLNLVDVVE 406 (1972)
Q Consensus 352 La~~L~~----------------~-----f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~--~~~l~~il~ 406 (1972)
+.+..+. . ....+..++..+-+.+++|+...+.....-|..++.. + ..++..++|
T Consensus 400 ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvp 479 (1233)
T KOG1824|consen 400 LLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVP 479 (1233)
T ss_pred HHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccch
Confidence 6543321 1 2244556777777778888888888888888888765 1 245677889
Q ss_pred HHHHHhhcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCch-----
Q 000167 407 DVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR----- 479 (1972)
Q Consensus 407 ~l~~~l~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~----- 479 (1972)
.|.-.+.+|+ .+.|..++.|+..++..+++..|.++++.+.|.+..++.|+.+.|-..|.-....+.+++...
T Consensus 480 gI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~ 559 (1233)
T KOG1824|consen 480 GIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSS 559 (1233)
T ss_pred hhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCcc
Confidence 9999998877 689999999999999999999999999999999999999999999999988888888887642
Q ss_pred -hHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCC
Q 000167 480 -PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (1972)
Q Consensus 480 -~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~ 558 (1972)
...+++..+-....++++... ....|+.-+.+.++.. .
T Consensus 560 ~d~~~~v~~m~~~tl~rL~a~d-----------------------------~DqeVkeraIscmgq~-------i----- 598 (1233)
T KOG1824|consen 560 FDASPYVKTMYDCTLQRLKATD-----------------------------SDQEVKERAISCMGQI-------I----- 598 (1233)
T ss_pred CCCChhHHHHHHHHHHHHhccc-----------------------------ccHHHHHHHHHHHHHH-------H-----
Confidence 245566666555444442210 0112333222221100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHh----hc--------c---CcHHHHHhhhcCChHHHHHHHH
Q 000167 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL----GS--------L---IPADTVGQLKSAVWKERLEAIS 623 (1972)
Q Consensus 559 ~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~----~~--------l---l~~~l~~~L~s~~Wk~Rl~a~e 623 (1972)
+.-++-.+. -....-..-.+....++|.--+...+ .+ . +-+++...|...+-+.|++.+.
T Consensus 599 ----~~fgD~l~~-eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~ 673 (1233)
T KOG1824|consen 599 ----ANFGDFLGN-ELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLT 673 (1233)
T ss_pred ----HHHhhhhhh-hhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 00000000000001122221111000 00 0 1156667777778888998888
Q ss_pred HHHHHHHhccccch--hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHH
Q 000167 624 SLRQQVEAVQNLDQ--SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAH 701 (1972)
Q Consensus 624 ~L~~~v~~~~~~~~--~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~ 701 (1972)
.+..+++......+ ..+.++.-+. |-+.|+..+|.+.++.++..++...+...-...+.+++.++.-+..+-+...
T Consensus 674 a~~~L~~~~~~~~~~~~~e~vL~el~--~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~ 751 (1233)
T KOG1824|consen 674 ALDKLVKNYSDSIPAELLEAVLVELP--PLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGG 751 (1233)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccch
Confidence 88888877433211 2233333221 3468999999999999999988765543223445666666666666655555
Q ss_pred HHHHHHHHHhhc----Chh--H--------------------------------------------HHHHHHHhhhh-CC
Q 000167 702 AMKCLTTFSEAV----GPG--F--------------------------------------------IFERLYKIMKD-HK 730 (1972)
Q Consensus 702 a~~~L~~l~e~~----~~~--~--------------------------------------------vl~~l~~~l~~-~K 730 (1972)
+..++..+.++. .++ | +...+...+.. ..
T Consensus 752 al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s 831 (1233)
T KOG1824|consen 752 ALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKS 831 (1233)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCC
Confidence 555544443321 011 0 01111111000 11
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHH
Q 000167 731 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALD 810 (1972)
Q Consensus 731 npKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le 810 (1972)
+-.++.-++..+.++=..++. .....+-..+.+. +++++.+|+.||.-++|.+-. |+ +..|| |-++.+|+
T Consensus 832 ~~~ikvfa~LslGElgr~~~~--s~~~e~~~~iiea-f~sp~edvksAAs~ALGsl~v--gn-l~~yL----pfil~qi~ 901 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGELGRRKDL--SPQNELKDTIIEA-FNSPSEDVKSAASYALGSLAV--GN-LPKYL----PFILEQIE 901 (1233)
T ss_pred chhHHHHHHhhhhhhccCCCC--CcchhhHHHHHHH-cCCChHHHHHHHHHHhhhhhc--Cc-hHhHH----HHHHHHHh
Confidence 122222222222222111111 1123344556666 999999999999999999853 32 22232 44444444
Q ss_pred HH----------HhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000167 811 AE----------YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKI 880 (1972)
Q Consensus 811 ~e----------fek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~l 880 (1972)
.+ |..+-. +.+. +-..|.+ .+|..-|++.++...--.|.--.|.++++
T Consensus 902 sqpk~QyLLLhSlkevi~----------~~sv---------d~~~~~v---~~IW~lL~k~cE~~eegtR~vvAECLGkL 959 (1233)
T KOG1824|consen 902 SQPKRQYLLLHSLKEVIV----------SASV---------DGLKPYV---EKIWALLFKHCECAEEGTRNVVAECLGKL 959 (1233)
T ss_pred cchHhHHHHHHHHHHHHH----------Hhcc---------chhhhhH---HHHHHHHHHhcccchhhhHHHHHHHhhhH
Confidence 32 111000 0000 0011111 12444455666555544465555555555
Q ss_pred HHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Q 000167 881 LEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960 (1972)
Q Consensus 881 l~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL 960 (1972)
+. .....|...|+.++.....+.+..++..+.....--...++++.+..+..++..+.|....||+.|..++
T Consensus 960 ~l--------~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen 960 VL--------IEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred Hh--------CChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 43 2237899999999876666677777777766666666788999999999999999999999999999999
Q ss_pred HHHHHhcC--chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000167 961 DAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1038 (1972)
Q Consensus 961 ~~i~~~~~--l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~ 1038 (1972)
+..+.+-+ +..++|.+.+.|.++ ..+|.+++.-.. +.| +++-.|..-++|++|++||-+
T Consensus 1032 nSaahNKpslIrDllpeLLp~Ly~e---TkvrkelIreVe---------------MGP-FKH~VDdgLd~RKaaFEcmyt 1092 (1233)
T KOG1824|consen 1032 NSAAHNKPSLIRDLLPELLPLLYSE---TKVRKELIREVE---------------MGP-FKHTVDDGLDLRKAAFECMYT 1092 (1233)
T ss_pred HHHHccCHhHHHHHHHHHHHHHHHh---hhhhHhhhhhhc---------------ccC-ccccccchHHHHHHHHHHHHH
Confidence 99998865 678999999999865 346777664431 222 455678889999999999999
Q ss_pred HHHH-cChhHHHHHh
Q 000167 1039 ILRA-GGQETIEKNL 1052 (1972)
Q Consensus 1039 l~~~-~G~~~~~~~l 1052 (1972)
+... ++.-.+..++
T Consensus 1093 LLdscld~~dit~Fl 1107 (1233)
T KOG1824|consen 1093 LLDSCLDRLDITEFL 1107 (1233)
T ss_pred HHHhhhhhccHHHHH
Confidence 8854 4444444444
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-16 Score=199.21 Aligned_cols=880 Identities=16% Similarity=0.180 Sum_probs=474.0
Q ss_pred hHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhh--
Q 000167 49 RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE-- 124 (1972)
Q Consensus 49 ~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~--~k~~~k~~a~~~ll~~~E~~-- 124 (1972)
.|.++...+-+.+++.|+.-+|.|+-.|..+....+.....|..++. .|..+|++ +.+ +|-.|...+..|++.-
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~-~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL-RLFSQTMTDPSSP-VRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH-HHHHHhccCCcch-HHHHHHHHHHHHHHHhcc
Confidence 57777888889999999999999999999998887665555655555 46678887 455 9988888777777652
Q ss_pred hhh------hHHHHH----HHHhhcCChhhHHHHHHHHHHHHHHhCCCccC--hhHHHHhhhhhhcCC--ChhHHHHHHH
Q 000167 125 AVD------VFLDVM----EKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKG 190 (1972)
Q Consensus 125 ~~~------~v~~~L----~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~--~k~il~~l~~ll~~~--d~~VR~~a~~ 190 (1972)
+.. .++..+ -.....-+-+....++.+|.+++...+. .+. +..++....++.++. |..+|..|..
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 121 222222 2223455666778889999988887665 332 345666666776665 7889999999
Q ss_pred HHHHHHHhhCCchhhH--HHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCC--CCCCCCCCC
Q 000167 191 LTLELCRWIGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPG--PSEESTADV 266 (1972)
Q Consensus 191 l~~ely~~lG~~~l~~--~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~--~~~~~~~~~ 266 (1972)
+++.+.++. +...|. .+...|-++.++.. ++ ...+. .+++.. ++
T Consensus 272 ~ivs~~e~A-p~~~k~~~~~~~~lv~~~l~~m-----------te-------------------~~~D~ew~~~d~~-de 319 (1075)
T KOG2171|consen 272 FLVSLSEYA-PAMCKKLALLGHTLVPVLLAMM-----------TE-------------------EEDDDEWSNEDDL-DE 319 (1075)
T ss_pred HHHHHHHhh-HHHhhhchhhhccHHHHHHHhc-----------CC-------------------cccchhhcccccc-cc
Confidence 999999882 111110 01111111211110 00 00000 000000 01
Q ss_pred CCCCCCCCCC-----------CcccccccCcccchhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHh
Q 000167 267 PPEIDEYELV-----------DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLI 334 (1972)
Q Consensus 267 ~~~iD~~dl~-----------~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l 334 (1972)
++.-++|.+. ++..|+..+= +.+...+.+.+|++|++||..|..+.. ..+...+.+..+++.+.+.+
T Consensus 320 d~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l 398 (1075)
T KOG2171|consen 320 DDEETPYRAAEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL 398 (1075)
T ss_pred ccccCcHHHHHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Confidence 1112232211 2223332221 344456799999999999999999884 44544457889999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHH-HHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC------hHhHHH
Q 000167 335 TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP-VLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN------LVDVVE 406 (1972)
Q Consensus 335 ~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp-~LL~klkdk-k~~V~~aa~~aL~al~~~~~~~------l~~il~ 406 (1972)
+|.+..|+..||++|+.++..+.+.++.+....+| .|+..+.+. ++.|..++..|+..+... |.. ++.+++
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLME 477 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 99999999999999999999999999988777666 555555443 557888899999988876 422 455555
Q ss_pred H-HHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCC----hHHHHHHHHHHHHHHHHhCchhH
Q 000167 407 D-VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT----PEVRDAAFSVLAAIAKSVGMRPL 481 (1972)
Q Consensus 407 ~-l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~----~~VR~aA~~~l~~l~~~~ge~~~ 481 (1972)
. +...+++.++.+|.+++..++.+..... ..|.+|.+.++|.|.++|...+ .++|-...+|++.+...+|.+.|
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhh
Confidence 3 3334567889999999999998766544 4578999999999999995444 68888889999999999998778
Q ss_pred HHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCC
Q 000167 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561 (1972)
Q Consensus 482 ~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k 561 (1972)
.++...|=.. .++..++......|..+ . .-+.-+- .-+--...+..--|.- -|+--+....+
T Consensus 557 ~~~a~eliql-------l~~~~~~~~~~dd~~~s-------y--~~~~war-mc~ilg~~F~p~L~~V-mppl~~ta~~~ 618 (1075)
T KOG2171|consen 557 LPLAEELIQL-------LLELQGSDQDDDDPLRS-------Y--MIAFWAR-MCRILGDDFAPFLPVV-MPPLLKTARLD 618 (1075)
T ss_pred hHhHHHHHHH-------HHhhcccchhhccccHH-------H--HHHHHHH-HHHHhchhhHhHHHHH-hHHHHHhhccC
Confidence 7776654221 11111111110100000 0 0000000 0000000000000000 00000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHH-------HHhhhcCChHHHHHHHHHHHHHHHhccc
Q 000167 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADT-------VGQLKSAVWKERLEAISSLRQQVEAVQN 634 (1972)
Q Consensus 562 ~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l-------~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~ 634 (1972)
+ ...++.++.++...+.-+-+. .=++..+-.-++..|.+.|..+-.....
T Consensus 619 p-----------------------~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~ 675 (1075)
T KOG2171|consen 619 P-----------------------DVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKE 675 (1075)
T ss_pred C-----------------------cccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhh
Confidence 0 001111111111111111110 0112233344445555555544333211
Q ss_pred -cchhHHHHHHHHh--cCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHh
Q 000167 635 -LDQSVEILVRLVC--MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSE 711 (1972)
Q Consensus 635 -~~~~~~~lv~~L~--~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e 711 (1972)
-.++.+-++..+. -+=.|.| -|...+++. +|.++...--.-.+..+ .+..+
T Consensus 676 ~F~pYve~v~~l~v~~l~f~fhd---gVR~aa~~~-------------------~p~ll~~~~~A~~~~p~--~l~~l-- 729 (1075)
T KOG2171|consen 676 AFAPYVEQVVELMVPLLKFYFHD---GVRKAAAES-------------------MPQLLTCALKACQGGPE--YLKQL-- 729 (1075)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhh---HHHHHHHHH-------------------HHHHHHHHHHHhccChH--HHHHH--
Confidence 0111111111000 0001111 133333333 33333110000000000 00000
Q ss_pred hcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhC
Q 000167 712 AVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1972)
Q Consensus 712 ~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G 791 (1972)
-+++++.++..+..-..+-+..+.++.+.+.++.+|..++....+-..+... + ..+ ..-+......-+
T Consensus 730 ---~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~-~----~~~----l~~~~~~~~r~~ 797 (1075)
T KOG2171|consen 730 ---WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGL-L----AQL----LQHFKRMQDRQE 797 (1075)
T ss_pred ---HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH-H----HHH----HHHHHHHHhhhh
Confidence 1123344444443445677888889999999999997665533322221111 0 000 000000000000
Q ss_pred hhHH-hhhhcccH---HHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCC-
Q 000167 792 PDIK-GFLADVKP---ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPD- 866 (1972)
Q Consensus 792 ~~l~-~~L~~lkp---~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~- 866 (1972)
.+.. ++-.+... .+=..|.+++.++.. +-+.. .+ .+..| .+..+-+-+...+.+++
T Consensus 798 ~~~eed~d~~eee~~~e~d~~ll~~i~~i~~-------~l~k~-------~k--~~f~p---~f~~~~p~iv~~l~~~~~ 858 (1075)
T KOG2171|consen 798 EDDEEDDDIEEEEDLDEQDAYLLDAISDILA-------ALAKA-------LK--GSFLP---FFENFLPLIVKLLKSKKT 858 (1075)
T ss_pred hhhhhhhhhHHHHHHhhhhHHHHHHHHHHHH-------HHHHH-------cc--ccccH---HHHHHHHHHHHHHhcCCc
Confidence 0000 00000000 000111111111100 00000 00 00111 12234455566666654
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhC
Q 000167 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946 (1972)
Q Consensus 867 Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~ 946 (1972)
|. |.=|+-.+.+++..+.+...+. +..+...+...+.|...-|++.|..-+|.+|.--|..+.+.+...+|.++..+.
T Consensus 859 ~~-r~~av~~~~d~ie~~~~a~~~~-~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq 936 (1075)
T KOG2171|consen 859 VA-RQWAVCIFDDLIEGCGEASAKY-KERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQ 936 (1075)
T ss_pred HH-HHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHc
Confidence 77 9999999999998654433333 477888889999999999999999999999999999999999999999998887
Q ss_pred CCc---HHHHHHHHHHHHHHHHh---c----CchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CC--Chh
Q 000167 947 DNK---KHMRECTLTVLDAWLAA---V----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FP--DAA 1011 (1972)
Q Consensus 947 D~k---~~Vr~Aa~~aL~~i~~~---~----~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~~--~~~ 1011 (1972)
... ..-+.+..+++.++.+- . +++.++|.++..|-... +-+.-..+..+|...++.... .+ ...
T Consensus 937 ~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~-D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~i 1015 (1075)
T KOG2171|consen 937 PPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKE-DKEEAVPIYTFLSDLYESNHPIVLGPNNQNI 1015 (1075)
T ss_pred ChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCcc-chhhhhhHHHHHHHHHHhCCCeeeCCCcccc
Confidence 543 33444555555555543 3 36778887777764221 223445577888888876544 11 122
Q ss_pred hhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHH
Q 000167 1012 HLLKP-ASIAMTDKSSDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERI 1067 (1972)
Q Consensus 1012 ~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~-G~~~~~~~l~~L~~~~~~~I~~~l 1067 (1972)
+.+.. +...+.+.+-+-|..+...+..+-... ..+.+...++.|++..+..+++.+
T Consensus 1016 p~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~~~~~~~~~~~~L~~~~~~~lq~~~ 1073 (1075)
T KOG2171|consen 1016 PKILSVCAESLADKKIEPRSTLARVIEILKQFLAPPSQFAALLATLPPDQQQALQAVL 1073 (1075)
T ss_pred hHHHHHHHhhhhccCCCccchHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHh
Confidence 32322 444455554444444443443333333 344677778889999888887754
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-21 Score=222.24 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=148.3
Q ss_pred cCcccchhhhhccCChHHHHHHHHHHHHHhcCC--CCCCCChHHHH----HHHHHHhcccCHHHHHHHHHHHHHHHHHhh
Q 000167 284 PLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVC----RTLKKLITDVNIAVAVEAIQAIGNLARGLR 357 (1972)
Q Consensus 284 kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~--ki~~~~y~~l~----~~L~k~l~D~N~~V~~~A~~~l~~La~~L~ 357 (1972)
.+. +.|+++..+.+|++|.+||+.|+.++.+. ......|.+.+ ..+.+.+.|.|+.|+..||.+++.|+..++
T Consensus 7 ~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 7 EIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 444 46777778999999999999999988544 22222333323 356677889999999999999999999999
Q ss_pred hchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH-HHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-
Q 000167 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETSS- 435 (1972)
Q Consensus 358 ~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~i-l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~- 435 (1972)
..|++|+..++|.|+++++++|+.|++++..||.+++.+ |.....+ ++.+..+++||||.+|..++.|+..++..++
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES-CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT-S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999987 3314566 7888889999999999999999999999998
Q ss_pred -hhHHHH--hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHH
Q 000167 436 -KAAVLK--VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (1972)
Q Consensus 436 -~~~l~~--~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI 496 (1972)
...+.. .++.+++.+.++++|++++||++|+++|+.+++++|++ ...++..||+..||.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~-a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER-AESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH-H---------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh-hccchhcchhcccccC
Confidence 334432 35889999999999999999999999999999999998 5778899999888765
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-15 Score=191.18 Aligned_cols=834 Identities=17% Similarity=0.183 Sum_probs=505.6
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhh-hhh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ 366 (1972)
.+...+-+.+-..|++|-+.+..+...++ +...|...+. -.|..++..|+..+..+..+.=+..... -.+
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 34455677888889999999988765443 6667777777 7788899999999888888755555433 335
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000167 367 LLPVLLEKL-KEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1972)
Q Consensus 367 llp~LL~kl-kdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (1972)
+-..||..+ +|..+.||.+....+..++++ ..-.-+++++-+..+.++.|++.|+.++..|..+....+. .+.++++
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~ 158 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHLD 158 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhHH
Confidence 556666664 899999999999999999987 1114567889999999999999999999999887765543 3567889
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhC-chhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCC
Q 000167 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1972)
Q Consensus 445 ~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~g-e~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 523 (1972)
.+.+.+.+|+.|....||-+|.++++++..... +...-+.+..+-|.-..-+.+.+...
T Consensus 159 ~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~-------------------- 218 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG-------------------- 218 (1075)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc--------------------
Confidence 999999999999999999999999999998885 32222222222222111111111000
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000167 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1972)
Q Consensus 524 s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 603 (1972)
.++
T Consensus 219 -------------------------------------------------------------------d~~---------- 221 (1075)
T KOG2171|consen 219 -------------------------------------------------------------------DDD---------- 221 (1075)
T ss_pred -------------------------------------------------------------------chH----------
Confidence 000
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCC-----
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF----- 677 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~-~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~----- 677 (1972)
.=..+++.|.+++...... .+....++.+....-+=++-+-.+...+|+++..+++..+..
T Consensus 222 -------------~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 222 -------------AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA 288 (1075)
T ss_pred -------------HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence 0011222223333322111 112222222211111224555578889999999888864432
Q ss_pred --chhhHHHHHHHHHhhhcch--------------hhhHHHHHHHHHHHhhcChhHHHHHHHHhh---hhCCChHHHHHH
Q 000167 678 --PKKCVVLCLLGISERVADI--------------KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEG 738 (1972)
Q Consensus 678 --~~~~~~~il~~LveKlgd~--------------K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l---~~~KnpKv~~e~ 738 (1972)
..+.+..++....+-..|. -....|.++|..++-..++..|+..+++.+ ..+.+||-|-++
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 2223333333333333331 135678889999999999999888887754 468999999999
Q ss_pred HHHHHHHHHHhCCC-CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhh-hcccHHHHHHHHHHHhcC
Q 000167 739 ILWMVSAVEDFGVS-HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKN 816 (1972)
Q Consensus 739 l~~L~~~i~~fG~~-~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~efek~ 816 (1972)
|..|+.+.+..+-. .-.+..+++.+... |.|+.|.||.+|..++|.|-..+++.+..+. +.++|++...++..
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~---- 443 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST---- 443 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc----
Confidence 99999998843321 01466788888885 9999999999999999999988887776544 44444444433321
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccc-cCCCCChhh
Q 000167 817 PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANK-RIQPAGTGE 895 (1972)
Q Consensus 817 ~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~-~I~~~~~~e 895 (1972)
.+-++-.-|.-.+-...+++.+ .|.|. +..
T Consensus 444 ------------------------------------------------~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~ 474 (1075)
T KOG2171|consen 444 ------------------------------------------------QNVRVQAHAAAALVNFSEECDKSILEPY-LDG 474 (1075)
T ss_pred ------------------------------------------------CchHHHHHHHHHHHHHHHhCcHHHHHHH-HHH
Confidence 1233334444445545554433 34454 477
Q ss_pred HHH-HHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHhcCch
Q 000167 896 LFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK----KHMRECTLTVLDAWLAAVHLD 970 (1972)
Q Consensus 896 L~~-~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k----~~Vr~Aa~~aL~~i~~~~~l~ 970 (1972)
|+. .|.-.+....+.|+..++.+|+.+|.+.+..|.+|...++|.+.+.|...+ ..+|.....|+..+...+|=+
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 888 444444666778889999999999999999999999999999999886544 468888889999988888866
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHH
Q 000167 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1972)
Q Consensus 971 ~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~ 1050 (1972)
++.|.-.+.++ .+.. +. ....|.+...|........-+++++|.+ |.+
T Consensus 555 ~F~~~a~eliq--------------ll~~-~~----------------~~~~~~dd~~~sy~~~~warmc~ilg~~-F~p 602 (1075)
T KOG2171|consen 555 KFLPLAEELIQ--------------LLLE-LQ----------------GSDQDDDDPLRSYMIAFWARMCRILGDD-FAP 602 (1075)
T ss_pred hhhHhHHHHHH--------------HHHh-hc----------------ccchhhccccHHHHHHHHHHHHHHhchh-hHh
Confidence 66664333222 2211 00 0122334446778887888889999985 466
Q ss_pred HhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcccccchhhhhhhh
Q 000167 1051 NLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQA 1130 (1972)
Q Consensus 1051 ~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 1130 (1972)
+++..=|.-.+ .++.. |--...... ......... +... ..-.+. +
T Consensus 603 ~L~~Vmppl~~-------ta~~~---p~~~~~d~~--d~e~~~~~~-----~~e~--~~~~~~-------------e--- 647 (1075)
T KOG2171|consen 603 FLPVVMPPLLK-------TARLD---PDVALSDEE--DEEEEQDLD-----GWEV--VELGDK-------------E--- 647 (1075)
T ss_pred HHHHHhHHHHH-------hhccC---CcccCcCch--hhhhccccc-----cchh--hccCCc-------------e---
Confidence 66433222211 11110 000000000 000000000 0000 000000 0
Q ss_pred ccccCCCC---hHHhh-h----hhcccccccCCChhhHHHHHHHHHHhhhHHHHHhhcCccHHHHHHHHHHHHHhc----
Q 000167 1131 LLNVKDSN---KEDRE-R----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKAL---- 1198 (1972)
Q Consensus 1131 ~~~~~~~~---k~~R~-~----~~~~k~~f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~~~al~~L~~~l---- 1198 (1972)
.+-+..+. |+.=. . -...|-.|. .++|+-...| +....|.-.-..|.+|++.|-..+
T Consensus 648 ~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~----pYve~v~~l~-------v~~l~f~fhdgVR~aa~~~~p~ll~~~~ 716 (1075)
T KOG2171|consen 648 NIGIRTSVLDEKETACEALGEYAKELKEAFA----PYVEQVVELM-------VPLLKFYFHDGVRKAAAESMPQLLTCAL 716 (1075)
T ss_pred eeeeeehhHHHHHHHHHHHHHHHHhhhhhhh----hHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 00000110 11000 0 001122232 2222221111 222333333334556666555433
Q ss_pred ---CcchhhHHHHHHHHHHHHHHhh-cCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhh-------CC
Q 000167 1199 ---PSIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS-------GH 1267 (1972)
Q Consensus 1199 ---~~~~~~~i~~lDlllk~~~lr~-~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~-------Gd 1267 (1972)
...+..+....+-+++.+..-+ .+.-+.|+..+|+-+...+..+.... |.+.+...++-.+..++ +|
T Consensus 717 ~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~--L~~~~~~~~~~~~~~~~l~~~~~~~~ 794 (1075)
T KOG2171|consen 717 KACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNC--LNEDGLEALLGGLLAQLLQHFKRMQD 794 (1075)
T ss_pred HHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCccc--CCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2344545554555555554443 45788999999999998888877654 77777777776664443 22
Q ss_pred ---------ChHHHHHHHH----HHHHHHhhc-------CCc------cccHHHHHhhhcCCChhhHHHHHHHHHHHHHh
Q 000167 1268 ---------NIEKVREKMR----ELTKQIVNF-------YSA------TKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1321 (1972)
Q Consensus 1268 ---------~k~~vr~~v~----~il~~~~~v-------~~~------skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~ 1321 (1972)
-.+..++.+. .++..++.+ +-. ..++|++..-+++++.--|+=.+..++.+|+.
T Consensus 795 r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~ 874 (1075)
T KOG2171|consen 795 RQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEG 874 (1075)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 1111222222 133333332 221 25788887777777655588888889999998
Q ss_pred hCCCccccc--chHHHHHhhhcCCchHHHHHHHHHHHHHHHHhCHHHHHHhhcCCHH
Q 000167 1322 HGAEISGQL--KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDA 1376 (1972)
Q Consensus 1322 ~G~~~~~~~--k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~~~vg~ls~~ 1376 (1972)
.|-.. -+. .-++.+..++.|.+++||++|---++.+-.+.|+..-..+..+.+.
T Consensus 875 ~~~a~-~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~ 930 (1075)
T KOG2171|consen 875 CGEAS-AKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPL 930 (1075)
T ss_pred ccccc-chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 88653 222 2359999999999999999999999999999888733333333333
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-17 Score=190.05 Aligned_cols=208 Identities=21% Similarity=0.327 Sum_probs=142.4
Q ss_pred cccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC----hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcCh
Q 000167 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1972)
Q Consensus 853 ~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~----~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~ 928 (1972)
.|...|.+...+.+|+.|.+|++.|+.++.+....-.... +.++...+...+.|.|..|+..||.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 3455566667889999999999999999986311111111 223334666788999999999999999999999999
Q ss_pred hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhh-HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000167 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1972)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-l~~l-l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1972)
.|++|+..++|.++++++|+++.||++|..||.+++.+++ ...+ ++.+..++.++ ||.+|..++.|+...+..++.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999 5666 77777788877 799999999999999999882
Q ss_pred -CCC------hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHH
Q 000167 1007 -FPD------AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1063 (1972)
Q Consensus 1007 -~~~------~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I 1063 (1972)
... +..++..+..++.|++++||++|+.++..++.++|+.+ ...+..|+|..++.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 111 23455669999999999999999999999999999986 556789999888765
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-09 Score=134.51 Aligned_cols=501 Identities=17% Similarity=0.211 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCChHhHHHHHHHHhhc--CCh
Q 000167 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKN--KVP 417 (1972)
Q Consensus 341 V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~-~~~l~~il~~l~~~l~~--Knp 417 (1972)
+...+|..++.+-..+|.-.-++...++..++-.+.-....||.-+..||..+..++ ..-+..+++++..+|.+ ++.
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~ 228 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMS 228 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchH
Confidence 566677777777778887777788889999999999999999999999999988771 13356788888888874 444
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHH
Q 000167 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 494 (1972)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l---~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~k 494 (1972)
.+|.. .+.|+.+.... ...+..+++.++|.+...+ +..+.+.|++..++++.|....+.+ +.|+.+.+-..-.+
T Consensus 229 ~~rt~-Iq~l~~i~r~a-g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e-i~p~~pei~~l~l~ 305 (1233)
T KOG1824|consen 229 ATRTY-IQCLAAICRQA-GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE-ILPHVPEIINLCLS 305 (1233)
T ss_pred HHHHH-HHHHHHHHHHh-cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh-hcccchHHHHHHHH
Confidence 55542 23333332222 2345567788999999988 8899999999999999999888754 77887776443332
Q ss_pred HHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 495 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQET 574 (1972)
Q Consensus 495 kI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~ 574 (1972)
+| .- + | +--. ..+ + +...
T Consensus 306 yi----sY--D-P--Ny~y-----------d~~--e------------------------------------Ded~---- 323 (1233)
T KOG1824|consen 306 YI----SY--D-P--NYNY-----------DTE--E------------------------------------DEDA---- 323 (1233)
T ss_pred Hh----cc--C-C--CCCC-----------CCc--c------------------------------------chhh----
Confidence 22 11 0 0 0000 000 0 0000
Q ss_pred CCCCCCCCCCC-CCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccc--------c----------
Q 000167 575 SKLTEAPEDVE-PSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--------L---------- 635 (1972)
Q Consensus 575 s~~~~~~~~~~-~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~--------~---------- 635 (1972)
...+..+|.+ ..++|+|| +-.||.|.+|..-+...+.+-.+ .
T Consensus 324 -~~~ed~eDde~~deYsDDe------------------D~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkE 384 (1233)
T KOG1824|consen 324 -MFLEDEEDDEQDDEYSDDE------------------DMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKE 384 (1233)
T ss_pred -hhhhccccchhcccccccc------------------chhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHH
Confidence 0000000000 12233322 22355555555444433322000 0
Q ss_pred -c-----hhHHHHHHHHhcCCC-------------------------------------CccchHHHHHHHHHHHHHHHH
Q 000167 636 -D-----QSVEILVRLVCMLPG-------------------------------------WSEKNVQVQQQVIEVINYLAA 672 (1972)
Q Consensus 636 -~-----~~~~~lv~~L~~~p~-------------------------------------~~DsN~qV~~~~Le~l~~l~~ 672 (1972)
+ ....+.+..|...+. +++...+-.+..|..+..++.
T Consensus 385 REEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~ 464 (1233)
T KOG1824|consen 385 REENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELIN 464 (1233)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 0 001222222222222 223333334456667777776
Q ss_pred HcCCCchhhHHHHHHHHHhhhcchh----hhHHHHHHHHHHHhhcChhHHHHH----HHH---hhhhCCChHHHHHHHHH
Q 000167 673 TATKFPKKCVVLCLLGISERVADIK----TRAHAMKCLTTFSEAVGPGFIFER----LYK---IMKDHKNPKVLSEGILW 741 (1972)
Q Consensus 673 ~~~~~~~~~~~~il~~LveKlgd~K----~r~~a~~~L~~l~e~~~~~~vl~~----l~~---~l~~~KnpKv~~e~l~~ 741 (1972)
.++....++...++|+++-.+.|.- .+..+.-.|.......+|+ +|.- +.+ ......=+|+..|+|..
T Consensus 465 ~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~-~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v 543 (1233)
T KOG1824|consen 465 VLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE-VFHPHLSALSPPVVAAVGDPFYKISAEALLV 543 (1233)
T ss_pred hCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh-hcccchhhhhhHHHHHhcCchHhhhHHHHHH
Confidence 6666666777888999998888842 2222222222222233332 2222 211 12345668999999999
Q ss_pred HHHHHHHhCC----CCCC----hhhHHHHH-HhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHH
Q 000167 742 MVSAVEDFGV----SHLK----LKDLIDFC-KDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1972)
Q Consensus 742 L~~~i~~fG~----~~l~----~k~li~~l-~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (1972)
..++++-.-. ..++ ++.++... +.+-..+.+.+||+.|+.|++.+...+|+.++.++...-|.+++.+..|
T Consensus 544 ~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE 623 (1233)
T KOG1824|consen 544 CQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE 623 (1233)
T ss_pred HHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch
Confidence 8888874322 1233 34444443 2222467889999999999999999988666655544444433333332
Q ss_pred HhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCC--C
Q 000167 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ--P 890 (1972)
Q Consensus 813 fek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~--~ 890 (1972)
. .|..|+..+.-|... .-.|. +
T Consensus 624 i-------------------------------------------------------TRl~AvkAlt~Ia~S-~l~i~l~~ 647 (1233)
T KOG1824|consen 624 I-------------------------------------------------------TRLTAVKALTLIAMS-PLDIDLSP 647 (1233)
T ss_pred h-------------------------------------------------------HHHHHHHHHHHHHhc-cceeehhh
Confidence 1 244455555544432 12222 2
Q ss_pred CChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-
Q 000167 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH- 968 (1972)
Q Consensus 891 ~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~- 968 (1972)
. ..++...|..-+.-.+..++..++.++..|.+..+..+..+ +..++-.+...+.++...|-+-|..++.+++..-+
T Consensus 648 ~-l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps 726 (1233)
T KOG1824|consen 648 V-LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPS 726 (1233)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccH
Confidence 2 25555555555554556677888999999999998887765 45677778888899999999999999999887654
Q ss_pred -----chhhHHHHHHHHhcC
Q 000167 969 -----LDKMVPYVTTALTDA 983 (1972)
Q Consensus 969 -----l~~ll~~l~~~L~~~ 983 (1972)
-..+++.+...++++
T Consensus 727 ~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 727 SLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHHHHhhhhHHHHHHHhhCc
Confidence 356778888888754
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=169.78 Aligned_cols=514 Identities=18% Similarity=0.173 Sum_probs=330.5
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCCcc-ChhHHHHhhhhhhcC-CChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHH
Q 000167 138 KNKVAKAVVPAIDVMFQALSEFGAKII-PPKRILKMLPELFDH-QDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDT 215 (1972)
Q Consensus 138 ~~KnpKv~~~~l~~l~~~l~~fG~~~~-~~k~il~~l~~ll~~-~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~ 215 (1972)
.+..+.+....+.+...++.++|.+.+ +++++.. ..++| .+.++|+....+.+.+.+|+... +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~---~~l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~ 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFE---QRLNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHH---HHhccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh
Confidence 566777778888888888999998643 3344332 22222 28889999888887777777531 22222
Q ss_pred HHHHHHHHHHhccCCCCCCcchhhhhhHhhhhh-ccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhh
Q 000167 216 MKKELEVELVNVSGTARPTRKIRAEQDKELGQE-LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV 294 (1972)
Q Consensus 216 q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l 294 (1972)
.-++..++.. .+|+...+ ++... -+.-.. . . +..+...++ +...+.+
T Consensus 96 --~~~~~~~~~~---~tps~~~q-----~~~~~~l~~~~~--~------------~---~~~~~~~~l-----~~l~~ll 143 (569)
T KOG1242|consen 96 --SIIEILLEEL---DTPSKSVQ-----RAVSTCLPPLVV--L------------S---KGLSGEYVL-----ELLLELL 143 (569)
T ss_pred --HHHHHHHHhc---CCCcHHHH-----HHHHHHhhhHHH--H------------h---hccCHHHHH-----HHHHHHh
Confidence 1223333332 23432111 11000 000000 0 0 000011111 3455667
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHH-HHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 000167 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~-A~~~l~~La~~L~~~f~~~~~~llp~LL~ 373 (1972)
+..+..+|+.|...+..+.++.-+....-..++..|.+.+.|.+....++ +..+.......||+.|+||...++|.+|.
T Consensus 144 ~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~ 223 (569)
T KOG1242|consen 144 TSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILT 223 (569)
T ss_pred ccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHH
Confidence 89999999999999999998776665444568899999999999888885 78888888899999999999999999999
Q ss_pred HhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHH
Q 000167 374 KLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452 (1972)
Q Consensus 374 klkdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k 452 (1972)
+++|+-+.||+++..|.++++.. ...++..+++.++.++....|+.|..++..+. ++..+.+.++..+++.++|.+.+
T Consensus 224 ~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 224 NFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSE 302 (569)
T ss_pred HhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHH
Confidence 99999999999999999999985 23557789999999888779999999999998 67778888888999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCccc
Q 000167 453 CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532 (1972)
Q Consensus 453 ~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~ 532 (1972)
.|.|++++||++|.+|+-.+..++.+..+.++++.|- +++.. |+...
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Ll--------d~l~d---------p~~~~---------------- 349 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLL--------DALAD---------PSCYT---------------- 349 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------HHhcC---------cccch----------------
Confidence 9999999999999999999999999988888887652 33211 00000
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhc
Q 000167 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 612 (1972)
Q Consensus 533 ~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s 612 (1972)
.+.--+ .+. +.-...+ ++..-+++-+-+...|..
T Consensus 350 --~e~~~~-L~~---------------------------------ttFV~~V----------~~psLalmvpiL~R~l~e 383 (569)
T KOG1242|consen 350 --PECLDS-LGA---------------------------------TTFVAEV----------DAPSLALMVPILKRGLAE 383 (569)
T ss_pred --HHHHHh-hcc---------------------------------eeeeeee----------cchhHHHHHHHHHHHHhh
Confidence 000000 000 0000001 111112233444444443
Q ss_pred CChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhh
Q 000167 613 AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISER 692 (1972)
Q Consensus 613 ~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveK 692 (1972)
.+.-.+..++..+. -+..+++. +.-....+..++|++=..
T Consensus 384 Rst~~kr~t~~Iid---------------------------------------Nm~~LveD-p~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 384 RSTSIKRKTAIIID---------------------------------------NMCKLVED-PKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred ccchhhhhHHHHHH---------------------------------------HHHHhhcC-HHHHhhhHHHHhhHHHHH
Confidence 33222222221111 11111110 000112344555555555
Q ss_pred hcc--hhhhHHHHHHHHHHHhhcCh---hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHH-HHHhc
Q 000167 693 VAD--IKTRAHAMKCLTTFSEAVGP---GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID-FCKDT 766 (1972)
Q Consensus 693 lgd--~K~r~~a~~~L~~l~e~~~~---~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~-~l~~~ 766 (1972)
+-| +-+|..+..+|..+.|..+- +.+...+...+...|.-+-+.+++..+..++...|.... ..++. .+...
T Consensus 424 ~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~--~~~~~~~~a~~ 501 (569)
T KOG1242|consen 424 LDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV--EDILPEILANA 501 (569)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH--HHHHHHHHHHH
Confidence 544 35677777777777665443 345666666666677788899999999999988776532 22222 22222
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcC
Q 000167 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1972)
Q Consensus 767 gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~ 816 (1972)
......+-+|..-+.++..+-...|..+..|+.++.+.+++.+.+.-+..
T Consensus 502 ~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~ 551 (569)
T KOG1242|consen 502 SSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKG 551 (569)
T ss_pred hhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCcc
Confidence 13334556898888888888778888888999888888888777654443
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-12 Score=152.35 Aligned_cols=692 Identities=15% Similarity=0.175 Sum_probs=417.6
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH----hhhch-hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000167 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG----LRTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1972)
Q Consensus 322 ~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~----L~~~f-~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (1972)
++.++.+.|..++.....+....|+.++..+++. +..++ .+....++|.+|.-++...+.+|..+..|++.++-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 3566677777766622223556666666666553 33332 256889999999999999999999999999987643
Q ss_pred c----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 397 G----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 397 ~----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
. ..+++.+++.+..--.+.+|.||...+..+..+++..+. .+.+++..++..+.....|.+.+|--.|++-.-++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 1 245677888888766789999999999999998886554 36678899999999999999999988888877666
Q ss_pred HHH-hCchhHHHhHhhccHHHHHHHHH-----HHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCC
Q 000167 473 AKS-VGMRPLERSIEKLDDVRRNKLSE-----MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR 546 (1972)
Q Consensus 473 ~~~-~ge~~~~~~l~~Ld~~~~kkI~e-----~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~ 546 (1972)
+.. +....+.+|+++|-|.....+.- .+-+. .. +...++-.. ...+
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~---~e---------------------eD~~vpDre----eDIk 335 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKN---NE---------------------EDESVPDRE----EDIK 335 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcC---cc---------------------ccccCCchh----hhcc
Confidence 644 33456788888877654332210 00000 00 000000000 0011
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHH----HhhccCc--------HHHHHhhh
Q 000167 547 PVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP---SEMSLEEIES----RLGSLIP--------ADTVGQLK 611 (1972)
Q Consensus 547 P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~---~~~s~ee~e~----~~~~ll~--------~~l~~~L~ 611 (1972)
|--. |+...+.+.-+ ...-.+..++-.. ..+....+.+ .++.+++ |-+.+.|.
T Consensus 336 PRfh----------ksk~~~~~~~~--~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 336 PRFH----------KSKEHGNGEDA--DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred chhh----------hchhccCcccc--ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 1100 01111111000 0000000000000 1111122222 2233444 45567789
Q ss_pred cCChHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC-CCchhhHHHHHHHH
Q 000167 612 SAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGI 689 (1972)
Q Consensus 612 s~~Wk~Rl~a~e~L~~~v~~-~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~-~~~~~~~~~il~~L 689 (1972)
+.+|+.|.+|+-.|+.+.++ ++...+....++.+|.. .+.|+-.-|..-.+=+|..+..-.. .-....+..++.++
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~--~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLS--LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH--HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 99999999999999999888 55444444445555431 3556555555433333333332111 11235667888899
Q ss_pred Hhhhcch--hhhHHHHHHHHHHHhhcChhH------HHHHHHHhh--hhCCChHHHHHHHHHHHHHHHHhCCCC----CC
Q 000167 690 SERVADI--KTRAHAMKCLTTFSEAVGPGF------IFERLYKIM--KDHKNPKVLSEGILWMVSAVEDFGVSH----LK 755 (1972)
Q Consensus 690 veKlgd~--K~r~~a~~~L~~l~e~~~~~~------vl~~l~~~l--~~~KnpKv~~e~l~~L~~~i~~fG~~~----l~ 755 (1972)
+.++-|. |++++|..++..+-|..+.+. ++.+++... -++||-.+...++..|+.-+-..=.+. +-
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL 561 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL 561 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh
Confidence 9999885 589999999999988776553 344444332 147899999999988888774221110 11
Q ss_pred hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHH---HhcCCCCC-CCCCCCc-ccc
Q 000167 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE---YEKNPFEG-TVVPKKT-VRA 830 (1972)
Q Consensus 756 ~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e---fek~~~~~-~~~p~r~-~r~ 830 (1972)
+.++++.-. . +.++++++-- -.+|+..+...+|..+.+|-..+=..-+..|++- ..++.... -..|-+. +-.
T Consensus 562 mPPLi~KW~-~-lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~ 638 (885)
T KOG2023|consen 562 MPPLIEKWE-L-LSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIV 638 (885)
T ss_pred ccHHHHHHH-h-cCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEE
Confidence 233443333 3 7888887643 3567777777788777776644333333333322 22332110 0112221 100
Q ss_pred cccc--C---CCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc
Q 000167 831 SEST--S---SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (1972)
Q Consensus 831 ~~~~--~---s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~ 905 (1972)
+-+- + +-+++.+.++.+.+ |..-++.-+.|.--.+|..+.-.+..+...+...+.|+. .+++..|-.-++
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~sn----l~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~-~~fl~~lg~Nl~ 713 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSN----LLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNL-ADFLPILGANLN 713 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhcc----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHhhcCC
Confidence 0000 0 00111222333322 334456677899999999999999999987777788875 888888887787
Q ss_pred cchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHH
Q 000167 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVT 977 (1972)
Q Consensus 906 DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k--~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~ 977 (1972)
-.+..+.-.|+-.+|+|+..+|.+..+|+..++-.++.-++-++ ..+-+-..-+++.+...++ ++.++..-.
T Consensus 714 ~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc 793 (885)
T KOG2023|consen 714 PENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWC 793 (885)
T ss_pred hhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHH
Confidence 78888999999999999999999999999999998888776433 3344444445555544443 222222222
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000167 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1972)
Q Consensus 978 ~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1972)
..|++=+ .-+.|..++.-+...+.-.+.. ..+.-++. .+....+...++|..-.+.|-.+...+|...-..++..+
T Consensus 794 ~sl~~i~-DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~-aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf 871 (885)
T KOG2023|consen 794 TSLRNID-DNEEKESAFRGLCNMINVNPSGVVSSFIFICD-AIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQF 871 (885)
T ss_pred HHhcccc-cchhHHHHHHHHHHheeeCchhhhhhhHHHHH-HHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcC
Confidence 3333211 1234666666665555444331 11111112 344556777899999999999999999988888899999
Q ss_pred ChHHHHHHHHH
Q 000167 1056 QGPALALILER 1066 (1972)
Q Consensus 1056 ~~~~~~~I~~~ 1066 (1972)
+|..+..+...
T Consensus 872 ~P~~~erl~a~ 882 (885)
T KOG2023|consen 872 PPPLKERLQAF 882 (885)
T ss_pred ChhHHHHHHHH
Confidence 99887766653
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-11 Score=146.07 Aligned_cols=672 Identities=18% Similarity=0.206 Sum_probs=383.0
Q ss_pred HHHHHHHHHHHHHHHHHhchhhh-----hhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh------hhhhHHHHHH
Q 000167 66 APVQDKALDALIAYLKAADADAG-----RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE------AVDVFLDVME 134 (1972)
Q Consensus 66 ~~vqe~~leal~~~v~~~~~~~~-----~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~------~~~~v~~~L~ 134 (1972)
...+|.|+.||....+-...-+- +...-++|.+++-.-...|++|..|+.|+-.|+=+. ..+..++.|.
T Consensus 142 ~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lF 221 (885)
T KOG2023|consen 142 YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILF 221 (885)
T ss_pred ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHH
Confidence 37889999988877765433111 224445666665533368999999999999988542 2255566665
Q ss_pred HHhhcCChhhHHHHHHHHHHHHHHhCCCccC-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHh-hCCchhhHHHhhhC
Q 000167 135 KAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVKTILFEKM 212 (1972)
Q Consensus 135 ~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~-lG~~~l~~~l~~~L 212 (1972)
.-.+.-+|.|+......+.-+++-.--+.+| +..|+.++...-.+.|.+|-=||..+...+... +-+..+.++| ++|
T Consensus 222 alanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l-~kl 300 (885)
T KOG2023|consen 222 ALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYL-DKL 300 (885)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHH-HHH
Confidence 5557889999988888888777654445554 678999999999999999999998887666532 2223454555 566
Q ss_pred hHHHHHHH-----HH-HHHhcc-CCCCCC-------cchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000167 213 RDTMKKEL-----EV-ELVNVS-GTARPT-------RKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP 278 (1972)
Q Consensus 213 k~~q~keL-----e~-~f~k~~-~~~~P~-------R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~ 278 (1972)
-|+.+.-. +- ..++.. ....|- ||-++... |.+.. .++++++.|
T Consensus 301 iPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~------------~~~~~---~~~eDdddD------- 358 (885)
T KOG2023|consen 301 IPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH------------GNGED---ADDEDDDDD------- 358 (885)
T ss_pred HHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc------------cCccc---ccccccccc-------
Confidence 66654421 00 111111 112222 33322211 11110 011111111
Q ss_pred ccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh
Q 000167 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT 358 (1972)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~ 358 (1972)
++-+.....+|.-|+.....|.-+++. +...-+.-+++.|++.+..-+=.|...++-++|.+|+|.-.
T Consensus 359 ----------e~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~ 426 (885)
T KOG2023|consen 359 ----------EDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ 426 (885)
T ss_pred ----------ccccccccccccHhhccHHHHHHHHHh--hHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh
Confidence 111223557899999776666555541 11122456778888888877777888899999999999999
Q ss_pred chhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000167 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1972)
Q Consensus 359 ~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (1972)
.|-||...++|.++..+.|||+-||.- .|.++.+.-..+. +...
T Consensus 427 g~~p~LpeLip~l~~~L~DKkplVRsI-----------TCWTLsRys~wv~----------------------~~~~--- 470 (885)
T KOG2023|consen 427 GFVPHLPELIPFLLSLLDDKKPLVRSI-----------TCWTLSRYSKWVV----------------------QDSR--- 470 (885)
T ss_pred hcccchHHHHHHHHHHhccCccceeee-----------eeeeHhhhhhhHh----------------------cCCh---
Confidence 999999999999999999999988852 2666555433332 1111
Q ss_pred HHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCC
Q 000167 439 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQT 518 (1972)
Q Consensus 439 l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~ 518 (1972)
.++++.++..+.+.+-|++..|.+||+.+++++-.-.|++ +-||++.+=..-......|-.
T Consensus 471 -~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~----------------- 531 (885)
T KOG2023|consen 471 -DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQK----------------- 531 (885)
T ss_pred -HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhh-----------------
Confidence 2334667777889999999999999999999999999986 667776653332222222111
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHh
Q 000167 519 SGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598 (1972)
Q Consensus 519 ~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~ 598 (1972)
T Consensus 532 -------------------------------------------------------------------------------- 531 (885)
T KOG2023|consen 532 -------------------------------------------------------------------------------- 531 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHh-cCCCCccchHHHHHHHHHHHHHHHHHcC-C
Q 000167 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVC-MLPGWSEKNVQVQQQVIEVINYLAATAT-K 676 (1972)
Q Consensus 599 ~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~-~~p~~~DsN~qV~~~~Le~l~~l~~~~~-~ 676 (1972)
+|-..=.+|+..|.+.+...-....+.++++.-|. |--.++|+..- +--.|+++..++..++ .
T Consensus 532 --------------KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd-LfPLLEClSsia~AL~~g 596 (885)
T KOG2023|consen 532 --------------KNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKD-LFPLLECLSSIASALGVG 596 (885)
T ss_pred --------------cceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccch-HHHHHHHHHHHHHHHhcc
Confidence 01111122222222222111001113333333221 11123443322 2235677777776553 2
Q ss_pred C---chhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCC
Q 000167 677 F---PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 753 (1972)
Q Consensus 677 ~---~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~ 753 (1972)
| ....+..|+ .|+.| ++..++....+.. ..+..-....-+|..++-+.+..|...
T Consensus 597 F~P~~~~Vy~Rc~-~il~~------------t~q~~~~~~~~~~---------~~~pdkdfiI~sLDL~SGLaegLg~~i 654 (885)
T KOG2023|consen 597 FLPYAQPVYQRCF-RILQK------------TLQLLAKVQQDPT---------VEAPDKDFIIVSLDLLSGLAEGLGSHI 654 (885)
T ss_pred ccccCHHHHHHHH-HHHHH------------HHHHHHhccCCcc---------ccCCCcceEEEeHHHHhHHHHHhhhch
Confidence 2 222222222 12211 2222222211110 011111123345666777777666532
Q ss_pred ---CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000167 754 ---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (1972)
Q Consensus 754 ---l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~ 830 (1972)
+.-..+.+.+..+ +.+.-|+||++|..++|.|-++.-+.+.++++++-|.+-..+
T Consensus 655 e~Lva~snl~~lll~C-~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl--------------------- 712 (885)
T KOG2023|consen 655 EPLVAQSNLLDLLLQC-LQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANL--------------------- 712 (885)
T ss_pred HHHhhhccHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcC---------------------
Confidence 1123477777775 999999999999999999987765556666555544432111
Q ss_pred ccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc--ccch
Q 000167 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSN 908 (1972)
Q Consensus 831 ~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L--~DsN 908 (1972)
.++.+. .-..|.-.++++........++. .+.++.-|...+ ...+
T Consensus 713 ------------------------~~~~is--------v~nNA~WAiGeia~k~g~~~~~~-v~~vl~~L~~iin~~~~~ 759 (885)
T KOG2023|consen 713 ------------------------NPENIS--------VCNNAIWAIGEIALKMGLKMKQY-VSPVLEDLITIINRQNTP 759 (885)
T ss_pred ------------------------Chhhch--------HHHHHHHHHHHHHHHhchhhhhH-HHHHHHHHHHHhcccCch
Confidence 111111 22344445666654322222322 244444444444 3456
Q ss_pred HHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcC-C
Q 000167 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDA-K 984 (1972)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~-~ 984 (1972)
+.+...+..+||.++-..+..+.+|...++.+....+..=+ ..-.+.|...+-.|+...+ +-.-+..+..++.+= +
T Consensus 760 ~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~n 839 (885)
T KOG2023|consen 760 KTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSN 839 (885)
T ss_pred HHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccC
Confidence 67778888889999887777888999999988776554321 1245677777777766543 333334455555421 1
Q ss_pred CChhHHHHHHHHHHH
Q 000167 985 LGAEGRKDLFDWLSK 999 (1972)
Q Consensus 985 ~~~~~R~~~l~~L~~ 999 (1972)
.....|.+..+.|..
T Consensus 840 p~~~l~~~f~kiL~g 854 (885)
T KOG2023|consen 840 PEDDLRDEFYKILQG 854 (885)
T ss_pred hHHHHHHHHHHHHHH
Confidence 113455555555543
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=155.04 Aligned_cols=387 Identities=17% Similarity=0.186 Sum_probs=265.6
Q ss_pred hHHHHHHHHHhhhcch---hhhHHHHHHHHHHHhhcChhHHHHHHHHhhhh---CCChHHHHHHHHHHHHHHHHhCCCC-
Q 000167 681 CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSH- 753 (1972)
Q Consensus 681 ~~~~il~~LveKlgd~---K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~---~KnpKv~~e~l~~L~~~i~~fG~~~- 753 (1972)
|...-+..++.|-|-. -++......+.++..++.+.+... +++.+-+ .-.||-+...++++....++|...+
T Consensus 60 w~~l~l~k~~~k~g~~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~ 138 (516)
T KOG2956|consen 60 WLKLALGKLFAKKGAEALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGT 138 (516)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCC
Confidence 3444445555554432 234555556777788888777666 6666532 3489999999999999998875432
Q ss_pred -CChhh----HHHHHHhcCCCC-CchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCC-CCCCC-
Q 000167 754 -LKLKD----LIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPK- 825 (1972)
Q Consensus 754 -l~~k~----li~~l~~~gL~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~-~~~p~- 825 (1972)
.+.+. +..+.... ++- ....+-....+.++.++..+..+|...++.+.|...+-.-+..+.+..+. .|.|.
T Consensus 139 s~~t~~~~~s~rkm~~~~-~d~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a 217 (516)
T KOG2956|consen 139 SPNTKETKAAIRKMFPWM-FDPRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSA 217 (516)
T ss_pred CCCCCcchhhhhhccccc-cCchhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchh
Confidence 22222 12222211 111 11223455566777777777778998888999988777776666553221 11111
Q ss_pred -C--cc-cccccc--------C-----CC---------CCC--------------CCCCCCcccc-cccccHHHHHhcCC
Q 000167 826 -K--TV-RASEST--------S-----SV---------SSG--------------GSDGLPREDI-SGKFTPTLVKSLES 864 (1972)
Q Consensus 826 -r--~~-r~~~~~--------~-----s~---------~~~--------------~~d~lprvdI-s~~l~~~ll~~l~d 864 (1972)
+ +. +.+... + .. +.+ ..+.+++..+ ...+..+++.++++
T Consensus 218 ~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v~~~l~~~~g 297 (516)
T KOG2956|consen 218 EKERFDSSNNKPSLPLSPPEEEKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQSALVADLLKEISG 297 (516)
T ss_pred hhcccccccccccccCCChhhcccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcchhHHHHHHHHhccC
Confidence 1 00 000000 0 00 000 0011221111 11234466777766
Q ss_pred C-CHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHH
Q 000167 865 P-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (1972)
Q Consensus 865 ~-~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D-sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll 942 (1972)
. .-..|++|+.+|.+++.+....++...|++|+..+.+.|.| .+......|+++|+.++++-...|..+.+..+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 6 78899999999999998877788888899999999999999 788899999999999999999999999999999999
Q ss_pred HHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChh-hhHHHHH
Q 000167 943 KCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAA-HLLKPAS 1018 (1972)
Q Consensus 943 ~~L~D~k~-~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~-~ll~pl~ 1018 (1972)
++-+|+.+ .+|.|+..|+..+..+.++..+. .+...+.+.. ...-..+++++.+.++..+.. ..+. ++++.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~I~-~i~~~Ilt~D--~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV-NISPLILTAD--EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhHHH-HHhhHHhcCc--chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 99999765 57777777788888888766543 3444444332 223466788999999887752 2333 3444499
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccC
Q 000167 1019 IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (1972)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~~ 1072 (1972)
++++..++.|||.|..||.+++..+|.+.|.+++..|..++++.|+-|++++..
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s 508 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASS 508 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998754
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-11 Score=149.63 Aligned_cols=365 Identities=17% Similarity=0.161 Sum_probs=259.8
Q ss_pred HHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcC-CChhH
Q 000167 31 ANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKT 109 (1972)
Q Consensus 31 ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~-~k~~~ 109 (1972)
+|.-+........+..||..-.+...+..-+.-.-..+|+....||-.++-........ -+..++.++++ .+...
T Consensus 75 ~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~----~~l~~l~~ll~~~~~~~ 150 (569)
T KOG1242|consen 75 NVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE----YVLELLLELLTSTKIAE 150 (569)
T ss_pred hhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH----HHHHHHHHHhccccHHH
Confidence 33333333333333344444444444455566777888998888888877654332222 23334445566 45555
Q ss_pred HHHHHHHHHHHH-----hhhhhhhHHHHHHHHhhcCChhhHH-HHHHHHHHHHHHhCCCccC-hhHHHHhhhhhhcCCCh
Q 000167 110 VEKAQAVFMLWV-----ELEAVDVFLDVMEKAIKNKVAKAVV-PAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQ 182 (1972)
Q Consensus 110 k~~a~~~ll~~~-----E~~~~~~v~~~L~~~~~~KnpKv~~-~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~ 182 (1972)
+..+..-+.-++ |......+++.|.++..+|++.... +++.+.......-|...-| +-+++|.+...|+|..+
T Consensus 151 ~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~ 230 (569)
T KOG1242|consen 151 RAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKIN 230 (569)
T ss_pred HhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccch
Confidence 555444333333 2234567889999998888776555 4666666666666754333 46788888899999999
Q ss_pred hHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCC
Q 000167 183 NVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEES 262 (1972)
Q Consensus 183 ~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~ 262 (1972)
.||.+|...+..+.+.+.+..++..+
T Consensus 231 ~Vr~Aa~~a~kai~~~~~~~aVK~ll------------------------------------------------------ 256 (569)
T KOG1242|consen 231 KVREAAVEAAKAIMRCLSAYAVKLLL------------------------------------------------------ 256 (569)
T ss_pred hhhHHHHHHHHHHHHhcCcchhhHhh------------------------------------------------------
Confidence 99999888776666665432221111
Q ss_pred CCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHH
Q 000167 263 TADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAV 341 (1972)
Q Consensus 263 ~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V 341 (1972)
| .....+.+.+|+.+..+++-|..++. .|+.......++++.|.+++.|+.+.|
T Consensus 257 -----------------------p--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~ev 311 (569)
T KOG1242|consen 257 -----------------------P--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEV 311 (569)
T ss_pred -----------------------h--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHH
Confidence 1 11222333499999999999998874 555555567899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHH
Q 000167 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLV 419 (1972)
Q Consensus 342 ~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~l~~Knp~v 419 (1972)
+..+..|+..++....+ +-+..++|.|++.+.|.+..+.++...-..+=|.+ ...+++-++|.+..++..++..+
T Consensus 312 r~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~ 388 (569)
T KOG1242|consen 312 RKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSI 388 (569)
T ss_pred HHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchh
Confidence 99999999999988875 45888999999999999977775554444332222 13557788999999999999999
Q ss_pred HHHHHHHHHHHHHhc-ChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhH
Q 000167 420 RSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1972)
Q Consensus 420 R~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~ 481 (1972)
|..++..+.....-+ .+..+.++++.++|.+.+.+.|+.|+||..|.++|+.+.+..|++.+
T Consensus 389 kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 389 KRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 999999988877777 57778899999999999999999999999999999999999998755
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-09 Score=128.91 Aligned_cols=661 Identities=18% Similarity=0.196 Sum_probs=382.6
Q ss_pred hccCChHHHHHHHHHHHHHh-c---------------CCCCCCCChHHHHHHHHHHh----------------------c
Q 000167 294 VKATKWSERKDAVAELTKLA-S---------------TKRIAPGDFTEVCRTLKKLI----------------------T 335 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~-~---------------~~ki~~~~y~~l~~~L~k~l----------------------~ 335 (1972)
+....-.-|++||..|..-+ . .+.+....-+-+++.+-.++ -
T Consensus 372 vKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvVieplli 451 (1172)
T KOG0213|consen 372 VKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLI 451 (1172)
T ss_pred hcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeeccee
Confidence 45666677899998886532 1 22233333344444443321 1
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC
Q 000167 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (1972)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~K 415 (1972)
|.......+.-.+|..|++..|=. .++..|=--+..+..-||+-...|...+..+ .++..++|.|...+++|
T Consensus 452 ded~yar~egreIisnLakaaGla------~mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLA------TMISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhH------HHHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 445555666666777776643311 1122222223456677888777777777776 78899999999888875
Q ss_pred -ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc---hhHHHhHhhccHH
Q 000167 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDDV 491 (1972)
Q Consensus 416 -np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge---~~~~~~l~~Ld~~ 491 (1972)
+|+-|.-+......+..-.+-+. .++++.++.++-++|.|....||--+.-++.++.+..+. +.|+..+.-|-..
T Consensus 524 kSwqaRhTgIkivqqIail~Gcsv-lphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCSV-LPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcchh-hhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 89999988777766544444443 467899999999999999999999999999999988653 4444444433221
Q ss_pred HHH----HHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 492 RRN----KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKD 567 (1972)
Q Consensus 492 ~~k----kI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~ 567 (1972)
.+. -+...++..|-.-|... ++-. .-..+.- +.--.+. .+.|
T Consensus 603 ir~hrgk~laafLkAigyliplmd--------------~eya-~yyTrev---mlil~rE--------f~sP-------- 648 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMD--------------AEYA-SYYTREV---MLILIRE--------FGSP-------- 648 (1172)
T ss_pred HHHccChHHHHHHHHHhhcccccc--------------HHHH-HHhHHHH---HHHHHHh--------hCCC--------
Confidence 111 11111111111000000 0000 0000000 0000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC------HHHHHHH---hhccCcHHHHHhhhcCChHHHHHHHHHHHHHH----Hhccc
Q 000167 568 GSGKQETSKLTEAPEDVEPSEMS------LEEIESR---LGSLIPADTVGQLKSAVWKERLEAISSLRQQV----EAVQN 634 (1972)
Q Consensus 568 ~~~~~~~s~~~~~~~~~~~~~~s------~ee~e~~---~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v----~~~~~ 634 (1972)
..+|- .+++++. -..++-.+++..++.+=|..|.++-......+ .....
T Consensus 649 ------------------DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~ 710 (1172)
T KOG0213|consen 649 ------------------DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA 710 (1172)
T ss_pred ------------------hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH
Confidence 00000 0000000 01234456777788888998888733222221 11110
Q ss_pred cchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHHHHhhhcchhhhHH-HHHHHHHHHh
Q 000167 635 LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRAH-AMKCLTTFSE 711 (1972)
Q Consensus 635 ~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~--~~~~~~~~~il~~LveKlgd~K~r~~-a~~~L~~l~e 711 (1972)
.-.+.+.+-+.+. .++|.+.|-.....+.+..++.+.+ .+..+....++.+++-.+...-+-+. ....+..++.
T Consensus 711 KvG~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~ 787 (1172)
T KOG0213|consen 711 KVGSDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVN 787 (1172)
T ss_pred HhCchHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHH
Confidence 0012344445443 4688888888888898888888765 45666667777777766655332222 2233444444
Q ss_pred hcCh------hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHh---CCCCCChhhHHHHHHhcCCCCCchhHHHHHHHH
Q 000167 712 AVGP------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF---GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782 (1972)
Q Consensus 712 ~~~~------~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~f---G~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~l 782 (1972)
.++. ..++..++..+ ++|+|+||+.++..++.+..-. |-.. -...+--.+-.. |+...|+|--.-..+
T Consensus 788 ~lg~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc~ee~-~m~~lGvvLyEy-lgeeypEvLgsILgA 864 (1172)
T KOG0213|consen 788 ALGGRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTCGEEK-LMGHLGVVLYEY-LGEEYPEVLGSILGA 864 (1172)
T ss_pred HHhhccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhccHHH-HHHHhhHHHHHh-cCcccHHHHHHHHHH
Confidence 4332 23444455553 7999999999998887765432 2110 011122223454 888999999999999
Q ss_pred HHHHHHhhC-----hhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHH
Q 000167 783 LGALHKFVG-----PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPT 857 (1972)
Q Consensus 783 l~~Ly~~~G-----~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ 857 (1972)
+..+|..+| +.++..|..+.|.+.+. -+|++...- ..+-. . ...+.+.++.-+-. .|.=+
T Consensus 865 ikaI~nvigm~km~pPi~dllPrltPILknr----heKVqen~I----dLvg~---I---adrgpE~v~aREWM-RIcfe 929 (1172)
T KOG0213|consen 865 IKAIVNVIGMTKMTPPIKDLLPRLTPILKNR----HEKVQENCI----DLVGT---I---ADRGPEYVSAREWM-RICFE 929 (1172)
T ss_pred HHHHHHhccccccCCChhhhcccchHhhhhh----HHHHHHHHH----HHHHH---H---HhcCcccCCHHHHH-HHHHH
Confidence 999999887 44666666666655433 333321000 00000 0 00000111110000 14446
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHc-ChhhHhhhhh
Q 000167 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM-GPAVEKSSKG 936 (1972)
Q Consensus 858 ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~al-g~~~~~~~~~ 936 (1972)
|++.+.+.|=.+|..|.+.+.-|. +.|.| .+++..|..-|+-.... .+++..++.+. +.-+.+| .
T Consensus 930 LlelLkahkK~iRRaa~nTfG~Ia----kaIGP---qdVLatLlnnLkvqeRq-----~RvcTtvaIaIVaE~c~pF--t 995 (1172)
T KOG0213|consen 930 LLELLKAHKKEIRRAAVNTFGYIA----KAIGP---QDVLATLLNNLKVQERQ-----NRVCTTVAIAIVAETCGPF--T 995 (1172)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH----HhcCH---HHHHHHHHhcchHHHHH-----hchhhhhhhhhhhhhcCch--h
Confidence 777777777788999999988765 35566 67777777655422222 22222222222 1112233 6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC--
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-- 1008 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~-- 1008 (1972)
++|.+++-..-...+|++-...+|.-+++.+| +-.++|.|.++|.+. ++.-|+.+...+.-..-+.+...
T Consensus 996 VLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr--D~vhRqta~~~I~Hl~Lg~~g~g~e 1073 (1172)
T KOG0213|consen 996 VLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR--DLVHRQTAMNVIKHLALGVPGTGCE 1073 (1172)
T ss_pred hhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc--cHHHHHHHHHHHHHHhcCCCCcCcH
Confidence 89999999999999999999999999999987 456788899999876 46678777766653332322211
Q ss_pred -ChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000167 1009 -DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1972)
Q Consensus 1009 -~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1972)
.+.+++.-+...+-|.++-|-.+..+|+..+...+|...|.+++
T Consensus 1074 da~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1074 DALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred HHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 12344445677889999999999999999999999999999986
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8e-11 Score=154.96 Aligned_cols=567 Identities=17% Similarity=0.195 Sum_probs=351.2
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchh
Q 000167 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1972)
Q Consensus 402 ~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~ 480 (1972)
..+...+...+.+-||..|++.+-||-.+++.+++ ....-.+++|..++..+|.|.|.=+.|.|.+.|+.++..-+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 34455566677899999999999999999998863 23334568899999999999999999999999998887655432
Q ss_pred HHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCC
Q 000167 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 560 (1972)
Q Consensus 481 ~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~ 560 (1972)
-..+.+.| +....+|.. ....+. .. ..-.+.+.. |+.|
T Consensus 897 k~~LV~sL-------~~tl~~Gkr-------~~~~vs------------~e--TelFq~G~L-g~Tp------------- 934 (1702)
T KOG0915|consen 897 KKSLVDSL-------VNTLTGGKR-------KAIKVS------------EE--TELFQEGTL-GKTP------------- 934 (1702)
T ss_pred HHHHHHHH-------HHHHhcccc-------ccceec------------cc--hhcccCCcC-CCCC-------------
Confidence 11222222 111111110 000000 00 000011111 0101
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhh-----cCChHHHHHHHHHHHHHHHhc-cc
Q 000167 561 KPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK-----SAVWKERLEAISSLRQQVEAV-QN 634 (1972)
Q Consensus 561 k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~-----s~~Wk~Rl~a~e~L~~~v~~~-~~ 634 (1972)
+| ...-|.-|+...++++-.|+++.++- +..|.-|.-|.-.|..+.... ..
T Consensus 935 ------~G-----------------g~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~k 991 (1702)
T KOG0915|consen 935 ------DG-----------------GKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEK 991 (1702)
T ss_pred ------CC-----------------CcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHh
Confidence 11 01226789999999999999987652 457999999999999998773 33
Q ss_pred cchhH-HHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcch--hhhHHHHHHHHHHHh
Q 000167 635 LDQSV-EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSE 711 (1972)
Q Consensus 635 ~~~~~-~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~--K~r~~a~~~L~~l~e 711 (1972)
..++. +.+.|++.. --|.+..|++.+-++|..++.........++..++..|+..|++. ++|+++.-+|..+..
T Consensus 992 l~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~ 1068 (1702)
T KOG0915|consen 992 LEPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQ 1068 (1702)
T ss_pred hhhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc
Confidence 44443 344454432 268999999999999999997655566778899999999999996 789999888888876
Q ss_pred hcChhHH-------HHHHHHhhhhCC-ChHH-HHHHHHHHHHHHHHhCCC--CCC----hhhHHHHHHhcCCCCCchhHH
Q 000167 712 AVGPGFI-------FERLYKIMKDHK-NPKV-LSEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAAATR 776 (1972)
Q Consensus 712 ~~~~~~v-------l~~l~~~l~~~K-npKv-~~e~l~~L~~~i~~fG~~--~l~----~k~li~~l~~~gL~~sn~~VR 776 (1972)
--+.+.+ +..+++.+-+.| +.|. -..++..|+.++-..+-. +.. +..+++++..-|.-++-++||
T Consensus 1069 g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr 1148 (1702)
T KOG0915|consen 1069 GRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVR 1148 (1702)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHH
Confidence 5554433 444444432222 2222 224556677766554431 111 344677775556778999999
Q ss_pred HHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHh-cCCCCCC------CCCCCccccccccCCC-CCCCCCCCCcc
Q 000167 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE-KNPFEGT------VVPKKTVRASESTSSV-SSGGSDGLPRE 848 (1972)
Q Consensus 777 ~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efe-k~~~~~~------~~p~r~~r~~~~~~s~-~~~~~d~lprv 848 (1972)
..++.++..|-++.|..+++|+.+|.|.++..+..-=. .+.+-.. .......|.+.+.++. -...++.++..
T Consensus 1149 ~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~i 1228 (1702)
T KOG0915|consen 1149 RFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYI 1228 (1702)
T ss_pred HHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhh
Confidence 99999999999999999999999999988766542100 0000000 0000011211111000 00113445555
Q ss_pred ccc--ccccHHHHHhcCCC-CHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Q 000167 849 DIS--GKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 925 (1972)
Q Consensus 849 dIs--~~l~~~ll~~l~d~-~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~a 925 (1972)
|++ .++.|.+.+.+... .--.|..+..-+.-+.......++|.. |.++.++...+.|-|..++..-...++.++..
T Consensus 1229 D~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1229 DISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLAKF 1307 (1702)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHHhc
Confidence 553 45666666655433 455566666656666666667788876 99999999999999999999888999999988
Q ss_pred cCh-hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 000167 926 MGP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (1972)
Q Consensus 926 lg~-~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~--~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~ 1002 (1972)
-.+ .+.++++.++..++....+.++........-.+...+.. ....++|.++=+.... ....+++++-+ +.+
T Consensus 1308 Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee---~Ka~q~Lw~dv--W~e 1382 (1702)
T KOG0915|consen 1308 SSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE---EKANQELWNDV--WAE 1382 (1702)
T ss_pred CChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH---HHHHHHHHHHH--HHH
Confidence 776 477888888888877666655333333322122222222 2467888666554321 11223333322 111
Q ss_pred cCCCCC-----ChhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 1003 GLSGFP-----DAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 1003 ~~~~~~-----~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
..+... ....++.+ ....+++..+.+|+.+..++..+...
T Consensus 1383 ~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1383 LVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred hCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence 122221 12334444 33456888889999988888766543
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-07 Score=133.75 Aligned_cols=773 Identities=14% Similarity=0.126 Sum_probs=452.4
Q ss_pred hhhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhhhhh---HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh-
Q 000167 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYA---KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV- 126 (1972)
Q Consensus 52 ~~~~~~~k~v~D-sN~~vqe~~leal~~~v~~~~~~~~~~~---~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~- 126 (1972)
....++.++-.- ++...++.++..|..|.+...++ .+.. ...+|.||.-.-++.+.+|..|..++..+...+..
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk 92 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLR 92 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 344556665443 46899999999999999886542 2222 34788888763346788898888777777655321
Q ss_pred -----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHh-----CCCccChhHHHHhhhhhhcCCC---hhHHHHHHHHHH
Q 000167 127 -----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEF-----GAKIIPPKRILKMLPELFDHQD---QNVRASSKGLTL 193 (1972)
Q Consensus 127 -----~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~f-----G~~~~~~k~il~~l~~ll~~~d---~~VR~~a~~l~~ 193 (1972)
...++.|+..+.+-++..+..|..+|..+.... +.+++--...+|.|..++.+.+ +.|++.+...+.
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~ 172 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR 172 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 344556666777778888888888887765421 2122212346777777777764 233333322222
Q ss_pred HHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCC
Q 000167 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEY 273 (1972)
Q Consensus 194 ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~ 273 (1972)
.|..+-+. ....+. + .+ .+
T Consensus 173 nLs~~~en--~~~~II------------------------------------------e---aG-----------aV--- 191 (2102)
T PLN03200 173 NLCGSTDG--FWSATL------------------------------------------E---AG-----------GV--- 191 (2102)
T ss_pred HHhcCccc--hHHHHH------------------------------------------H---cC-----------CH---
Confidence 22221110 000000 0 00 00
Q ss_pred CCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcC-CCCCC--CChHHHHHHHHHHhc-ccCHHHHHHHHHHH
Q 000167 274 ELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAI 349 (1972)
Q Consensus 274 dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki~~--~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l 349 (1972)
+.+.+.+.+.+=..+.+|...|..++.+ +.... -+ ...++.|.+.+. +.+..+...|+.+|
T Consensus 192 --------------p~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 192 --------------DILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred --------------HHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 1233444555555666777766665532 21100 01 124677777886 56778999999999
Q ss_pred HHHHHHhhhchhhhh--hhHHHHHHHHhcc---------CcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC-Ch
Q 000167 350 GNLARGLRTHFSGSS--RFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VP 417 (1972)
Q Consensus 350 ~~La~~L~~~f~~~~--~~llp~LL~klkd---------kk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~K-np 417 (1972)
..|+.+- .++...+ ...+|.|++.+.. .+...++.+.-||..++.. ...+++.+...+.+. ..
T Consensus 257 ~nLAs~s-~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg----~~~ll~~L~~ll~s~rd~ 331 (2102)
T PLN03200 257 EALSSQS-KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG----MSALILYLGELSESPRSP 331 (2102)
T ss_pred HHHhcCC-HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC----chhhHHHHHHhhcccchH
Confidence 9999741 2222221 2447777777653 3455678888888877652 356777777666542 34
Q ss_pred HHHHHHHHHHHHHHHhcChh-HHHHhh--hhHHHHHHHHhcCCChHH-HHHHHHHHHHHHHHhCchhHHHhHhhccHHHH
Q 000167 418 LVRSLTLNWVTFCIETSSKA-AVLKVH--KDYVPICMECLNDGTPEV-RDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (1972)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~-~l~~~l--~~l~p~l~k~l~Ds~~~V-R~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~ 493 (1972)
.+-..++..+..++...... .....+ ..+++.|++++...++.+ .+.+.++|. ..+|+..+...+..-|. .
T Consensus 332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa---sl~gN~~l~~~L~~~da--i 406 (2102)
T PLN03200 332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA---SLYGNAYLSRKLNHAEA--K 406 (2102)
T ss_pred HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH---HhcCChHHHHHHHhccc--h
Confidence 44445555665554433211 111112 246789999999887774 766666664 44565444434332211 0
Q ss_pred HHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 494 NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQE 573 (1972)
Q Consensus 494 kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~ 573 (1972)
+-+-..+...+ ..++........
T Consensus 407 k~LV~LL~~~~---------------------------~evQ~~Av~aL~------------------------------ 429 (2102)
T PLN03200 407 KVLVGLITMAT---------------------------ADVQEELIRALS------------------------------ 429 (2102)
T ss_pred hhhhhhhccCC---------------------------HHHHHHHHHHHH------------------------------
Confidence 11111111000 000000000000
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccc------hhHHHHHHHHh
Q 000167 574 TSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVC 647 (1972)
Q Consensus 574 ~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~lv~~L~ 647 (1972)
... .-+.+........-.-+-++..|.+.+-..|..|+..|..+..+.++.. .....|+++|.
T Consensus 430 --~L~---------~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~ 498 (2102)
T PLN03200 430 --SLC---------CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE 498 (2102)
T ss_pred --HHh---------CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 000 0011222222222234778899999999999999988887765432210 12345566553
Q ss_pred cCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhc--chhhhHHHHHHHHHHHhhcChhHHHHHHH
Q 000167 648 MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERLY 723 (1972)
Q Consensus 648 ~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlg--d~K~r~~a~~~L~~l~e~~~~~~vl~~l~ 723 (1972)
..+..+++.+.-++..+... ..-.+..+ .-+++.|++-+. +.+.+..|..+|..+......+ ++..++
T Consensus 499 ------s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-~I~~Lv 570 (2102)
T PLN03200 499 ------TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-TISQLT 570 (2102)
T ss_pred ------CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-HHHHHH
Confidence 34667888888888776642 11112223 136777777664 4678888888998887754443 556676
Q ss_pred HhhhhCCChHHHHHHHHHHHHHHHHhCCC-----CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhh
Q 000167 724 KIMKDHKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (1972)
Q Consensus 724 ~~l~~~KnpKv~~e~l~~L~~~i~~fG~~-----~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (1972)
.. ..+.+++++..++..+..++..-... +.....-++.+.++ +.+.++.+++.|..++..++....
T Consensus 571 ~L-Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~~------- 641 (2102)
T PLN03200 571 AL-LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSRQ------- 641 (2102)
T ss_pred HH-hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCh-------
Confidence 65 47889999999999887776521111 01012356677777 899999999999998888864221
Q ss_pred hcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHH
Q 000167 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878 (1972)
Q Consensus 799 ~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~ 878 (1972)
.+.+.+-. ....+-++..+.+.+-+.|+++...|.
T Consensus 642 -----d~~~avv~----------------------------------------agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 642 -----DLCESLAT----------------------------------------DEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred -----HHHHHHHH----------------------------------------cCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 11000000 001234677778888899999999999
Q ss_pred HHHHHcccc-CCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHH
Q 000167 879 KILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957 (1972)
Q Consensus 879 ~ll~~a~~~-I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~ 957 (1972)
.+....+.. ...-.-...++.|.+.|++.+..++..|+.+|..|+..-...-+-.....++.++..+.+....+|+.|.
T Consensus 677 nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa 756 (2102)
T PLN03200 677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAA 756 (2102)
T ss_pred HHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHH
Confidence 888532100 0000013467889999999999999999999999986542221112245689999999999999999999
Q ss_pred HHHHHHHHhcCchhhH----------HHHHHHHhcCCC-ChhH--HHHHHHHHHHHhccCCC-CC------ChhhhHHHH
Q 000167 958 TVLDAWLAAVHLDKMV----------PYVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPA 1017 (1972)
Q Consensus 958 ~aL~~i~~~~~l~~ll----------~~l~~~L~~~~~-~~~~--R~~~l~~L~~~l~~~~~-~~------~~~~ll~pl 1017 (1972)
.+|..++.+.+.+.++ ..+.+.|...+. +... -.+++.|+++.=..... .+ +...-+.|+
T Consensus 757 ~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l 836 (2102)
T PLN03200 757 RALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPL 836 (2102)
T ss_pred HHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHH
Confidence 9999999888766533 345666764321 1111 23455555542111111 11 223457889
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 1018 SIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1018 ~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
+.|+.+.+++|-..|.+.|..+++
T Consensus 837 ~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 837 VRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHHcCChHHHHHHHHHHHHHhc
Confidence 999999999999999999998875
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-07 Score=128.40 Aligned_cols=810 Identities=16% Similarity=0.144 Sum_probs=462.7
Q ss_pred chhhhhccC--ChHHHHHHHHHHHHHhcCC---CCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhchh
Q 000167 289 GFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFS 361 (1972)
Q Consensus 289 ~f~~~l~s~--kWkeR~eaL~~L~~l~~~~---ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~ 361 (1972)
.+.+++.+. +-++|+.|+.+|+.+++.. +..-.+....++.|...|...+..+...|+.++..|+.. .+...-
T Consensus 17 ~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv 96 (2102)
T PLN03200 17 QCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVL 96 (2102)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 677788765 7799999999999998532 111111233567777777755677778888888888753 222221
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCC-------hHhHHHHHHHHhhcCCh---HHHHHHHHHHHHH
Q 000167 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLN-------LVDVVEDVKTSVKNKVP---LVRSLTLNWVTFC 430 (1972)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~-~~~-------l~~il~~l~~~l~~Knp---~vR~~~l~~L~~~ 430 (1972)
....+|+|++.+++.+...++++..+|..+..++ +.. -..++|.+...+++.+. .++..++..|..+
T Consensus 97 --~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nL 174 (2102)
T PLN03200 97 --LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNL 174 (2102)
T ss_pred --HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 2678999999999989999999999999987641 011 13467888888886542 2444445555554
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCC
Q 000167 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 509 (1972)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~ 509 (1972)
..... ......+ .-.+|.++..|.+.++.++..|..++..++...++ .. ..| ++. |+
T Consensus 175 s~~~e-n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~~------------~aV---Iea-Ga---- 232 (2102)
T PLN03200 175 CGSTD-GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-SI------------SKV---LDA-GA---- 232 (2102)
T ss_pred hcCcc-chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-HH------------HHH---HHC-CC----
Confidence 43322 1111112 23789999999999999999888777655433322 01 111 110 00
Q ss_pred CCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 510 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 589 (1972)
Q Consensus 510 ~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~ 589 (1972)
T Consensus 233 -------------------------------------------------------------------------------- 232 (2102)
T PLN03200 233 -------------------------------------------------------------------------------- 232 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHhhccCcHHHHHhhhc-CChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHH
Q 000167 590 SLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 668 (1972)
Q Consensus 590 s~ee~e~~~~~ll~~~l~~~L~s-~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~ 668 (1972)
-+.+++.|.+ .+-..|.+|.-.|..+..+.. ...+.++. ..++..|.
T Consensus 233 -------------VP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~---e~r~~Iv~----------------aGgIp~LI 280 (2102)
T PLN03200 233 -------------VKQLLKLLGQGNEVSVRAEAAGALEALSSQSK---EAKQAIAD----------------AGGIPALI 280 (2102)
T ss_pred -------------HHHHHHHHccCCChHHHHHHHHHHHHHhcCCH---HHHHHHHH----------------CCCHHHHH
Confidence 0234445543 334567777766665543211 11111111 00111111
Q ss_pred HHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHH
Q 000167 669 YLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (1972)
Q Consensus 669 ~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~ 748 (1972)
.++.. +. +.++ ..-...-+++.|.-+|..+|.-. ..++..+...+.......+...++..|..++..
T Consensus 281 ~lL~s-p~--~e~~--------~~~~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 281 NATVA-PS--KEFM--------QGEFAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHhC-cc--hhhh--------ccccchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 11110 00 0000 00000112445555555555432 234444444432233555666777778777765
Q ss_pred hCCCC-----CChhhHHHHHHhcCCCCCchh-HHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCC
Q 000167 749 FGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1972)
Q Consensus 749 fG~~~-----l~~k~li~~l~~~gL~~sn~~-VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~ 822 (1972)
+.... ++...+.+.+.++ +.+.++. |.+.+..++..+| |+. .+.+.|.+. +
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~---gN~----------~l~~~L~~~-----d---- 404 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLY---GNA----------YLSRKLNHA-----E---- 404 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhc---CCh----------HHHHHHHhc-----c----
Confidence 54321 2223344566677 7888776 4777777766655 221 111122110 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHh
Q 000167 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1972)
Q Consensus 823 ~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~ 902 (1972)
..+-++..+...+-..+.++...|..++...+..++.-.-...++.|..
T Consensus 405 -------------------------------aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~ 453 (2102)
T PLN03200 405 -------------------------------AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLIS 453 (2102)
T ss_pred -------------------------------chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHH
Confidence 0012444445555567777777777776431111110000234677888
Q ss_pred ccccchHHHHHHHHHHHHHHHHHcChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----c--hhhHH
Q 000167 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----L--DKMVP 974 (1972)
Q Consensus 903 ~L~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-----l--~~ll~ 974 (1972)
.|...+..++..|+.+++.|+..-...-... -...+|.+++.|...+..+++.|..+|..+..+-. + ...+|
T Consensus 454 LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIp 533 (2102)
T PLN03200 454 LLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVP 533 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHH
Confidence 8887888899999999998875322111111 13589999999999999999999899988775321 1 24677
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhcc
Q 000167 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1054 (1972)
Q Consensus 975 ~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~ 1054 (1972)
.|...|++. ++..|..++..|...+... ....+++++..|...++.+...+..+++.+......+.+.... .
T Consensus 534 pLV~LL~sg--d~~~q~~Aa~AL~nLi~~~-----d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g-~ 605 (2102)
T PLN03200 534 ALLWLLKNG--GPKGQEIAAKTLTKLVRTA-----DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG-S 605 (2102)
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh-h
Confidence 888888876 5788888777777654421 1235567777787778888888888887776655544322211 0
Q ss_pred CChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcccccchhhhhhhhcccc
Q 000167 1055 IQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134 (1972)
Q Consensus 1055 L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1972)
........+.+.++..
T Consensus 606 ~~~ggL~~Lv~LL~sg---------------------------------------------------------------- 621 (2102)
T PLN03200 606 AANDALRTLIQLLSSS---------------------------------------------------------------- 621 (2102)
T ss_pred hccccHHHHHHHHcCC----------------------------------------------------------------
Confidence 0111222222222110
Q ss_pred CCCChHHhh-hhhcccccccCCChhhHHHHHHHHHHhhhHHHHHhhcCccHHHHHHHHHHHHHhcCcchhh-HHHHHH-H
Q 000167 1135 KDSNKEDRE-RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD-IIEVLD-I 1211 (1972)
Q Consensus 1135 ~~~~k~~R~-~~~~~k~~f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~~~al~~L~~~l~~~~~~-~i~~lD-l 1211 (1972)
.+..+. ....+ +++-..+.+..+.+- +...+ +-++.+|.+.++..+.++.-.|...+.+.... .....+ =
T Consensus 622 ---s~~ikk~Aa~iL-snL~a~~~d~~~avv--~agaI-pPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~G 694 (2102)
T PLN03200 622 ---KEETQEKAASVL-ADIFSSRQDLCESLA--TDEII-NPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAED 694 (2102)
T ss_pred ---CHHHHHHHHHHH-HHHhcCChHHHHHHH--HcCCH-HHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence 000000 00000 112223334333220 11223 35888889999998888887777766543322 111111 1
Q ss_pred HHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhCCChHHHHHHHHHHHHHHhhcCCccc
Q 000167 1212 LLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1291 (1972)
Q Consensus 1212 llk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~Gd~k~~vr~~v~~il~~~~~v~~~sk 1291 (1972)
.++.++--+.+.+..+...+++.|..++..-... .+.=..-.||.|+.-+.+..+.+|+..-..+-++|.-+|...
T Consensus 695 aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~----~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 695 AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA----AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH----HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 3333333457889999999999988765422111 111123468999888877778899999999999999999877
Q ss_pred cH----------HHHHhhhcCCChhhH--HHHHHHHHHHHHh-hCCCcccc--------cchHHHHHhhhcCCchHHHHH
Q 000167 1292 TL----------PYILEGLRSKNNRTR--IECVDLVGFLIDH-HGAEISGQ--------LKSLQIVASLTAERDGEIRKA 1350 (1972)
Q Consensus 1292 vf----------~~l~~gl~sKN~r~R--~ecl~~l~~li~~-~G~~~~~~--------~k~l~~ia~~i~drd~~VR~a 1350 (1972)
+| .-|++-|++-|.+.- .|.|+.|+.+... +|..-..| +-.|..+..|+.+-++.|-..
T Consensus 771 ~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~k 850 (2102)
T PLN03200 771 VLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDK 850 (2102)
T ss_pred HHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHH
Confidence 44 334455677776554 4699999988873 34332111 134677888899999999999
Q ss_pred HHHHHHHHHHHhCHHHHHHhhc---CCHHHHHhHHHHHHhh
Q 000167 1351 ALNTLATGYKILGEDIWRYVGK---LTDAQKSMLDDRFKWK 1388 (1972)
Q Consensus 1351 Al~~l~~~y~~~G~~v~~~vg~---ls~~~~s~l~er~kr~ 1388 (1972)
|+..|. .+|+|+-. .+|+ =.++-.+.|-.|+=.+
T Consensus 851 ai~il~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 851 AIEILS---RLCRDQPV-VLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred HHHHHH---HHhccChh-HHHHHHhcccchHHHHHHHHhhc
Confidence 999998 45666421 2232 2445566777777654
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-09 Score=131.92 Aligned_cols=587 Identities=15% Similarity=0.151 Sum_probs=355.2
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhchhhh--hhhHHHHHHH
Q 000167 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLE 373 (1972)
Q Consensus 300 keR~eaL~~L~~l~~--~~ki~~~~y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~LL~ 373 (1972)
-.|...|+.|.-++. .|......+.+++-++..... +.+..|+..|.+|+-.--.-.+..|... ...++..+.+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 467788888887775 233222345666666555443 7777788888777755444445566533 4467778888
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCC-----hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh-c-------------
Q 000167 374 KLKEKKPTVAESLTQTLQAMHKAGCLN-----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET-S------------- 434 (1972)
Q Consensus 374 klkdkk~~V~~aa~~aL~al~~~~~~~-----l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~-~------------- 434 (1972)
...-....|+.|+..||..|+.-.... .+.++..-+.++++.|..|..++..|-..+.+. .
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888888999999999999988641111 234566667889999999999999998855432 1
Q ss_pred -Chh--HHH-HhhhhHHHHHHHHhc-------CCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcC
Q 000167 435 -SKA--AVL-KVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1972)
Q Consensus 435 -~~~--~l~-~~l~~l~p~l~k~l~-------Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (1972)
++. .+. ..++.++|.|.+.|. |-+=.+-.+|-.||..+.+++|+..+++.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl------------------ 366 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVL------------------ 366 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhH------------------
Confidence 110 111 234567777777662 112245566777777777777765322111
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (1972)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~ 583 (1972)
T Consensus 367 -------------------------------------------------------------------------------- 366 (859)
T KOG1241|consen 367 -------------------------------------------------------------------------------- 366 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccc--hhH-HHHHHHHhcCCCCccchHHHH
Q 000167 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--QSV-EILVRLVCMLPGWSEKNVQVQ 660 (1972)
Q Consensus 584 ~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~--~~~-~~lv~~L~~~p~~~DsN~qV~ 660 (1972)
+=+.+.+.+.+|+.|.+|+..+++++++..+.. +.. +.+..++. ...|++..|
T Consensus 367 --------------------~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~---lm~D~sl~V- 422 (859)
T KOG1241|consen 367 --------------------PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN---LMSDPSLWV- 422 (859)
T ss_pred --------------------HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH---HhcCchhhh-
Confidence 123346777899999999999999998854321 111 11111110 112333222
Q ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHH
Q 000167 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGIL 740 (1972)
Q Consensus 661 ~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~ 740 (1972)
+++..+.++.+++-+.+.... ..-+..++..++.++ +..|+|...++.
T Consensus 423 ------------------kdTaAwtlgrI~d~l~e~~~n------------~~~l~~~l~~l~~gL--~DePrva~N~CW 470 (859)
T KOG1241|consen 423 ------------------KDTAAWTLGRIADFLPEAIIN------------QELLQSKLSALLEGL--NDEPRVASNVCW 470 (859)
T ss_pred ------------------cchHHHHHHHHHhhchhhccc------------HhhhhHHHHHHHHHh--hhCchHHHHHHH
Confidence 234555555555544421110 111233455555554 568999999988
Q ss_pred HHHHHHHHhC---CCC----CC---hhhHHHHHHhc-CCCC-CchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHH
Q 000167 741 WMVSAVEDFG---VSH----LK---LKDLIDFCKDT-GLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSA 808 (1972)
Q Consensus 741 ~L~~~i~~fG---~~~----l~---~k~li~~l~~~-gL~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~ 808 (1972)
.+..+.+... ... .. ...++.-+.+. -..+ ...+.|.+|.+.|++|-++...+..+.+.++-+.+++.
T Consensus 471 Af~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~k 550 (859)
T KOG1241|consen 471 AFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEK 550 (859)
T ss_pred HHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 8877776432 211 11 12233333321 0112 33579999999999999999888777777777777777
Q ss_pred HHHHHhcCCCCCCCCCCCc-ccccccc-----C---CCCCCCCCCCCcccccccccHHHHHhcCCC-CHHHHHHHHHHHH
Q 000167 809 LDAEYEKNPFEGTVVPKKT-VRASEST-----S---SVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVN 878 (1972)
Q Consensus 809 Le~efek~~~~~~~~p~r~-~r~~~~~-----~---s~~~~~~d~lprvdIs~~l~~~ll~~l~d~-~Wk~R~eale~l~ 878 (1972)
|+.-++..... -..|. ...=++. + ...+ . .+-.+++.|...|+..++.+ .--+-.+|+-++.
T Consensus 551 l~q~i~~~~l~---~~dr~q~~eLQs~Lc~~Lq~i~rk~~--~---~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~ 622 (859)
T KOG1241|consen 551 LDQTISSQILS---LADRAQLNELQSLLCNTLQSIIRKVG--S---DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVS 622 (859)
T ss_pred HHHHHHHHhcc---HhhHHHHHHHHHHHHHHHHHHHHHcc--c---cchhHHHHHHHHHHHHHcCCccccchHHHHHHHH
Confidence 77666511100 00000 0000000 0 0000 0 12244566777788877773 4455678888888
Q ss_pred HHHHHccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcH--HHHHH
Q 000167 879 KILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK--HMREC 955 (1972)
Q Consensus 879 ~ll~~a~~~I~~~~~~eL~~~L~~~L-~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~--~Vr~A 955 (1972)
.++...++.+.... ..+.+.|..-| +-....|...|+.+++.|+.+|+.+|-+|+..++..++++|....- .|.-+
T Consensus 623 tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~ 701 (859)
T KOG1241|consen 623 TLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPA 701 (859)
T ss_pred HHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccch
Confidence 88875433333322 44555555556 4456778899999999999999999999999999999999997654 47777
Q ss_pred HHHHHHHHHHhcC--chhhHHHHHHHHhcCC-------------CChhHHHHHHHHHHHHhccCCC---CCChhhhHHHH
Q 000167 956 TLTVLDAWLAAVH--LDKMVPYVTTALTDAK-------------LGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPA 1017 (1972)
Q Consensus 956 a~~aL~~i~~~~~--l~~ll~~l~~~L~~~~-------------~~~~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl 1017 (1972)
...+...|+-.+| ....+..+...|+... +.-.+|..+++.-.-.+..... ...+.+.+.++
T Consensus 702 IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I 781 (859)
T KOG1241|consen 702 ILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHI 781 (859)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHH
Confidence 8888999988887 4556665555554211 0124777777776666665553 22233444444
Q ss_pred Hhh---c--CCC-CHHHHHHHHHHHHHHHHHcChhHHH
Q 000167 1018 SIA---M--TDK-SSDVRKAAEACIVEILRAGGQETIE 1049 (1972)
Q Consensus 1018 ~~~---L--~D~-~~dVR~aA~~~l~~l~~~~G~~~~~ 1049 (1972)
++- + ++. +..+-.+|...++-+...+|.+.+.
T Consensus 782 ~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 782 ISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 442 2 333 3566777788888999999976544
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-07 Score=114.21 Aligned_cols=721 Identities=15% Similarity=0.192 Sum_probs=388.0
Q ss_pred hhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHh-hhcCCcHHHHHHHHHHHHHHHHHhch------------
Q 000167 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVADSNAPVQDKALDALIAYLKAADA------------ 85 (1972)
Q Consensus 19 rl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k-~v~DsN~~vqe~~leal~~~v~~~~~------------ 85 (1972)
+++.-.--.|.+|+..|.+...+- ...|.|+++.+++.. -+.|.---..-+.++-++.=++-.-.
T Consensus 371 kvKNG~ppmRk~~LR~ltdkar~~--ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvViep 448 (1172)
T KOG0213|consen 371 KVKNGTPPMRKSALRILTDKARNF--GAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEP 448 (1172)
T ss_pred hhcCCCchhHHHHHHHHHHHHHhh--ccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeec
Confidence 455666777888888888776543 245666666665544 35555555555555544443222100
Q ss_pred -----hh-hhh-hHHHHHHHHHhhc------------CC-ChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hcCChhh
Q 000167 86 -----DA-GRY-AKEVCDAIAAKCL------------TG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-KNKVAKA 144 (1972)
Q Consensus 86 -----~~-~~~-~~~v~~~LveK~l------------~~-k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~-~~KnpKv 144 (1972)
+. ++. ..+|+..|+..|. .. .+=+|+-.-..+-.++..-....++..|.... +.|.|+.
T Consensus 449 llided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqa 528 (1172)
T KOG0213|consen 449 LLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQA 528 (1172)
T ss_pred ceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhh
Confidence 10 111 1235555544431 11 12233322222222222222234444443333 4569999
Q ss_pred HHHHHHHHHHHHHHhCCCccC-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHH
Q 000167 145 VVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVE 223 (1972)
Q Consensus 145 ~~~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~ 223 (1972)
+--|+.++.++-.-.|..+++ ++++++.+...+.|....||--+...+..++.-.++= .-.-|+. .++-|-+.
T Consensus 529 RhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Py--gie~fDs----VlkpLwkg 602 (1172)
T KOG0213|consen 529 RHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPY--GIEQFDS----VLKPLWKG 602 (1172)
T ss_pred hchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCc--chHHHHH----HHHHHHHH
Confidence 999999999998889998887 7899999999999999999999888888888887762 1111221 11222221
Q ss_pred HHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHH
Q 000167 224 LVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERK 303 (1972)
Q Consensus 224 f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~ 303 (1972)
+....| +.... . -.+.|.- -..+|+ . + +.+|. |
T Consensus 603 ir~hrg-------------k~laa-f-LkAigyl---------iplmd~------e-----y--a~yyT---------r- 635 (1172)
T KOG0213|consen 603 IRQHRG-------------KELAA-F-LKAIGYL---------IPLMDA------E-----Y--ASYYT---------R- 635 (1172)
T ss_pred HHHccC-------------hHHHH-H-HHHHhhc---------cccccH------H-----H--HHHhH---------H-
Confidence 111100 00000 0 0000000 000000 0 0 11111 1
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHH-
Q 000167 304 DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTV- 382 (1972)
Q Consensus 304 eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V- 382 (1972)
|++. .|.+-++...--.-...+++++.+|..-|..=+-.-..++|.+|..|....-..
T Consensus 636 evml---------------------il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~d 694 (1172)
T KOG0213|consen 636 EVML---------------------ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALD 694 (1172)
T ss_pred HHHH---------------------HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhcc
Confidence 2222 222222211111111223333444433332211123457888888776543322
Q ss_pred ---HHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHHhcCCC
Q 000167 383 ---AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGT 458 (1972)
Q Consensus 383 ---~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~l~Ds~ 458 (1972)
-..+..+-..++.. .+.+.++..+..-+++.+++-|.-++..+.+.+...+...+. +.-..++..++-++.+..
T Consensus 695 rr~ykqlv~ttv~ia~K--vG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt 772 (1172)
T KOG0213|consen 695 RRNYKQLVDTTVEIAAK--VGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT 772 (1172)
T ss_pred ccchhhHHHHHHHHHHH--hCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc
Confidence 01122333445544 555788888999999999999999999999999988766554 334556777766665444
Q ss_pred hHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCccccccccc
Q 000167 459 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538 (1972)
Q Consensus 459 ~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~ 538 (1972)
.++- ....+|+++...+|.+ +.+|++.+-......+ .. ++ +.|+..+
T Consensus 773 t~d~-vml~gfg~V~~~lg~r-~kpylpqi~stiL~rL----nn---------ks------------------a~vRqqa 819 (1172)
T KOG0213|consen 773 TEDS-VMLLGFGTVVNALGGR-VKPYLPQICSTILWRL----NN---------KS------------------AKVRQQA 819 (1172)
T ss_pred cchh-hhhhhHHHHHHHHhhc-cccchHHHHHHHHHHh----cC---------CC------------------hhHHHHH
Confidence 4442 6788999999999987 6788887644322222 11 00 0011111
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHH
Q 000167 539 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKER 618 (1972)
Q Consensus 539 ~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~R 618 (1972)
+...+...+. .+. --| +.+...++--+.+.|....-..=
T Consensus 820 adlis~la~V-------------------------lkt-------------c~e---e~~m~~lGvvLyEylgeeypEvL 858 (1172)
T KOG0213|consen 820 ADLISSLAKV-------------------------LKT-------------CGE---EKLMGHLGVVLYEYLGEEYPEVL 858 (1172)
T ss_pred HHHHHHHHHH-------------------------HHh-------------ccH---HHHHHHhhHHHHHhcCcccHHHH
Confidence 1000000000 000 001 11111222222222222111111
Q ss_pred HHHHHHHHHHHHh--ccccchh-HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCC-c-hhhHHHHHHHHHhhh
Q 000167 619 LEAISSLRQQVEA--VQNLDQS-VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF-P-KKCVVLCLLGISERV 693 (1972)
Q Consensus 619 l~a~e~L~~~v~~--~~~~~~~-~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~-~-~~~~~~il~~LveKl 693 (1972)
-.-+..+..++.. +....+. .++|.++. |-++..+-+|+..+++++..++.+.+.+ + +.|+-.| =.|+|-|
T Consensus 859 gsILgAikaI~nvigm~km~pPi~dllPrlt---PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIc-feLlelL 934 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLT---PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC-FELLELL 934 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCChhhhcccch---HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH-HHHHHHH
Confidence 1122223333333 2222122 23333332 5567888899999999999999987765 3 3444444 4667766
Q ss_pred cc-hh-hhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCC
Q 000167 694 AD-IK-TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSS 771 (1972)
Q Consensus 694 gd-~K-~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~s 771 (1972)
-. .| .|..|.+++.-|++++||+-|+..|+..+.-+ .-..|..+--.++-+-+..|.- .+++.+..- ..-+
T Consensus 935 kahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~pF-----tVLPalmne-YrtP 1007 (1172)
T KOG0213|consen 935 KAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGPF-----TVLPALMNE-YRTP 1007 (1172)
T ss_pred HHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCch-----hhhHHHHhh-ccCc
Confidence 54 44 79999999999999999999999999887211 1111222222222222233331 244444443 6778
Q ss_pred chhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCccccc
Q 000167 772 AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDIS 851 (1972)
Q Consensus 772 n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs 851 (1972)
+.+|.+...+.+.-||.|+|+.-++|+-.+
T Consensus 1008 e~nVQnGVLkalsf~FeyigemskdYiyav-------------------------------------------------- 1037 (1172)
T KOG0213|consen 1008 EANVQNGVLKALSFMFEYIGEMSKDYIYAV-------------------------------------------------- 1037 (1172)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHhhhHHHHh--------------------------------------------------
Confidence 889999999999999999997666654222
Q ss_pred ccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhH
Q 000167 852 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931 (1972)
Q Consensus 852 ~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~ 931 (1972)
+|-+.+.+-|.+---|.-|+..+.-+.-+ +. |-..+
T Consensus 1038 ---~PlleDAlmDrD~vhRqta~~~I~Hl~Lg------~~-----------------------------------g~g~e 1073 (1172)
T KOG0213|consen 1038 ---TPLLEDALMDRDLVHRQTAMNVIKHLALG------VP-----------------------------------GTGCE 1073 (1172)
T ss_pred ---hHHHHHhhccccHHHHHHHHHHHHHHhcC------CC-----------------------------------CcCcH
Confidence 23333334444444455555555443321 11 12223
Q ss_pred hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000167 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (1972)
Q Consensus 932 ~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~ 998 (1972)
..+..++.-+.-..=|..++|.++...|+..+...+|...++.++..+|=++ .-.+|..-|....
T Consensus 1074 da~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGLFHP--arkVR~~yw~vyn 1138 (1172)
T KOG0213|consen 1074 DALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGLFHP--ARKVRKRYWTVYN 1138 (1172)
T ss_pred HHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhccCc--HHHHHHHHHHHHH
Confidence 3334444445555568899999999999999999999999999999998776 3456776665553
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-08 Score=119.66 Aligned_cols=212 Identities=19% Similarity=0.275 Sum_probs=173.4
Q ss_pred chhhhhc-cCChHHHHHHHHHHHHHhcCC--CCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhhhchhhhh
Q 000167 289 GFWEGVK-ATKWSERKDAVAELTKLASTK--RIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (1972)
Q Consensus 289 ~f~~~l~-s~kWkeR~eaL~~L~~l~~~~--ki~~~~y~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~~ 364 (1972)
+....+. +..-.+|++|+.+|..+.... .+....|.+|+..+..++.| .+......|++.|+.+++.-...|..+.
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst 369 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST 369 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH
Confidence 3334443 458889999999999876432 34456688999999999998 7888899999999999999999999999
Q ss_pred hhHHHHHHHHhccCcHHH-HHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000167 365 RFLLPVLLEKLKEKKPTV-AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1972)
Q Consensus 365 ~~llp~LL~klkdkk~~V-~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1972)
+..+-.+|+..+|....| +.|...|+..+..+ .++. .+.-|...+.+-.-..-..++..++++++..+...+...+
T Consensus 370 E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~--~P~~-~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll 446 (516)
T KOG2956|consen 370 EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH--LPLQ-CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL 446 (516)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh--Cchh-HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh
Confidence 999999999999987755 56666667666665 3333 3333333333344444457788999999999999999999
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcC
Q 000167 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1972)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (1972)
+.++|.++++.+.+...||++|.-||..+...+|++.+.|++.+|...+++.|.=|++.+
T Consensus 447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988899999999999999998888764
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-05 Score=97.27 Aligned_cols=566 Identities=16% Similarity=0.147 Sum_probs=328.5
Q ss_pred ccCChHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH-------Hhhhchhhhh-
Q 000167 295 KATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-------GLRTHFSGSS- 364 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~-------~L~~~f~~~~- 364 (1972)
.+.+=+.|..|+..|.+|.+- ..+.+---..++..-...+..-|-.|...|+..-..++. ..+..++.+.
T Consensus 227 q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 567778899999999998741 111111112344444556667777787777655543332 2233333333
Q ss_pred -----------hhHHHHHHHHhcc--C-----cHHHHHHHHHHHHHHHHhcC--CChHhHHHHHHHHhhcCChHHHHHHH
Q 000167 365 -----------RFLLPVLLEKLKE--K-----KPTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTL 424 (1972)
Q Consensus 365 -----------~~llp~LL~klkd--k-----k~~V~~aa~~aL~al~~~~~--~~l~~il~~l~~~l~~Knp~vR~~~l 424 (1972)
..++|.||+.+-. . .=++..|+..||.-+... | .=+.-|+|-|.+.+++.+|.-|..+.
T Consensus 307 p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-~~D~Iv~~Vl~Fiee~i~~pdwr~reaav 385 (859)
T KOG1241|consen 307 PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-VGDDIVPHVLPFIEENIQNPDWRNREAAV 385 (859)
T ss_pred chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-hcccchhhhHHHHHHhcCCcchhhhhHHH
Confidence 3789999998732 1 225678888898877664 2 11334556666677788999999888
Q ss_pred HHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCC
Q 000167 425 NWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504 (1972)
Q Consensus 425 ~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~ 504 (1972)
-.+...+..-.+..+.+.....+|.+...+.|+.--||+.+.-+|+.+..++.+...+... -..++.-++.+..
T Consensus 386 mAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~------l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 386 MAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQEL------LQSKLSALLEGLN 459 (859)
T ss_pred HHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhh------hhHHHHHHHHHhh
Confidence 8888888766666777888999999999999999999999999999999988864332111 1123333333321
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 505 GDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDV 584 (1972)
Q Consensus 505 ~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~ 584 (1972)
+. |..+....-. .. +.+.. .+-+ ++ +....++
T Consensus 460 De-Prva~N~CWA-----------f~-~Laea---------~~eA--------~~---------------s~~qt~~--- 491 (859)
T KOG1241|consen 460 DE-PRVASNVCWA-----------FI-SLAEA---------AYEA--------AV---------------SNGQTDP--- 491 (859)
T ss_pred hC-chHHHHHHHH-----------HH-HHHHH---------HHHh--------cc---------------CCCCCCc---
Confidence 10 0000000000 00 00000 0000 00 0000000
Q ss_pred CCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcC---CCCccchHHHHH
Q 000167 585 EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML---PGWSEKNVQVQQ 661 (1972)
Q Consensus 585 ~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~---p~~~DsN~qV~~ 661 (1972)
.+ +..+.|+.-|.+. +.-+++| ...
T Consensus 492 ----~t----------------------------------------------~~y~~ii~~Ll~~tdr~dgnqsN--LR~ 519 (859)
T KOG1241|consen 492 ----AT----------------------------------------------PFYEAIIGSLLKVTDRADGNQSN--LRS 519 (859)
T ss_pred ----cc----------------------------------------------hhHHHHHHHHHhhccccccchhh--HHH
Confidence 00 0111222222111 1224555 557
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHH
Q 000167 662 QVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILW 741 (1972)
Q Consensus 662 ~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~ 741 (1972)
.++++|..++..+++-....+..+...+.+||... +. .+++...-.++--.++.--+.+
T Consensus 520 AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~---------i~------------~~~l~~~dr~q~~eLQs~Lc~~ 578 (859)
T KOG1241|consen 520 AAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQT---------IS------------SQILSLADRAQLNELQSLLCNT 578 (859)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH---------HH------------HHhccHhhHHHHHHHHHHHHHH
Confidence 78999999998755332233333444444444331 11 1111111111112234445677
Q ss_pred HHHHHHHhCCCCCC-hhhHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCC
Q 000167 742 MVSAVEDFGVSHLK-LKDLIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (1972)
Q Consensus 742 L~~~i~~fG~~~l~-~k~li~~l~~~gL~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~ 819 (1972)
|..++..+|..... ...++..+... ++. ....|-+.|.-.+++|...+|..|..|+..++|-+...+...-+
T Consensus 579 Lq~i~rk~~~~~~~~~d~iM~lflri-~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e----- 652 (859)
T KOG1241|consen 579 LQSIIRKVGSDIREVSDQIMGLFLRI-FESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE----- 652 (859)
T ss_pred HHHHHHHccccchhHHHHHHHHHHHH-HcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH-----
Confidence 77788888874322 34566666666 676 45568899999999999999999999998888887766633211
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHH
Q 000167 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGG 899 (1972)
Q Consensus 820 ~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~ 899 (1972)
+.+-..++--+..+...-...|.|.. .+++..
T Consensus 653 -----------------------------------------------~qVc~~aVglVgdl~raL~~~i~py~-d~~mt~ 684 (859)
T KOG1241|consen 653 -----------------------------------------------YQVCAAAVGLVGDLARALEDDILPYC-DELMTV 684 (859)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHH
Confidence 12222333344445443333445543 678888
Q ss_pred HHhccccc--hHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHh---CCCc--------HHHHHHHHHHHHHHHHh
Q 000167 900 LRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---GDNK--------KHMRECTLTVLDAWLAA 966 (1972)
Q Consensus 900 L~~~L~Ds--N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L---~D~k--------~~Vr~Aa~~aL~~i~~~ 966 (1972)
|.+.|+.. ..+|.-.-+.+.+.||-++|.+|++|+..++|-+-..- .|.. ..+|+++.++-..++.-
T Consensus 685 Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qg 764 (859)
T KOG1241|consen 685 LVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQG 764 (859)
T ss_pred HHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888554 45677777999999999999999999999999887655 1221 24788888888888776
Q ss_pred cC-------chhhHHHHHHHHh----cCCCChhHHHHHHHHHHHHhccCCCC---C-ChhhhHHH-HHhhcCCCCHHHHH
Q 000167 967 VH-------LDKMVPYVTTALT----DAKLGAEGRKDLFDWLSKQLTGLSGF---P-DAAHLLKP-ASIAMTDKSSDVRK 1030 (1972)
Q Consensus 967 ~~-------l~~ll~~l~~~L~----~~~~~~~~R~~~l~~L~~~l~~~~~~---~-~~~~ll~p-l~~~L~D~~~dVR~ 1030 (1972)
++ +..++|.|+..+. ++..+-.+-..+++.+.......+.. . ...++++- |..+..-+....|+
T Consensus 765 lk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~ 844 (859)
T KOG1241|consen 765 LKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKD 844 (859)
T ss_pred hhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHH
Confidence 65 2345565555553 22212234456677776666555531 1 12345555 55566666666777
Q ss_pred HHHHHHHHHHHH
Q 000167 1031 AAEACIVEILRA 1042 (1972)
Q Consensus 1031 aA~~~l~~l~~~ 1042 (1972)
.|+-+...+-++
T Consensus 845 ~A~wa~e~ikr~ 856 (859)
T KOG1241|consen 845 LARWATEEIKRQ 856 (859)
T ss_pred HHHHHHHHHHHH
Confidence 777666655443
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-07 Score=108.05 Aligned_cols=684 Identities=17% Similarity=0.227 Sum_probs=372.8
Q ss_pred hhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHh-hhcCCcHHHHHHHHHHHHHHHHHhch------------
Q 000167 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVADSNAPVQDKALDALIAYLKAADA------------ 85 (1972)
Q Consensus 19 rl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k-~v~DsN~~vqe~~leal~~~v~~~~~------------ 85 (1972)
+++.-.-..|.+|+..|.+...+- .....|+++.+++.. -+.|.---..-+-++-++.=+.-...
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~f--g~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~p 253 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNF--GAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGP 253 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcc--cHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeec
Confidence 456667788899988888765432 223355555554433 35555444444444444433222110
Q ss_pred -----hhhhh--hHHHHHHHHHhhc-C----C-C-------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHH-hhcCChhh
Q 000167 86 -----DAGRY--AKEVCDAIAAKCL-T----G-R-------PKTVEKAQAVFMLWVELEAVDVFLDVMEKA-IKNKVAKA 144 (1972)
Q Consensus 86 -----~~~~~--~~~v~~~LveK~l-~----~-k-------~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~-~~~KnpKv 144 (1972)
+..+. ..+|+..|+..|. + + | +=+|+-.-...-.++..-..+.++..|... -+.|.|+.
T Consensus 254 llided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~a 333 (975)
T COG5181 254 LLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEA 333 (975)
T ss_pred cccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhh
Confidence 11111 2355556655542 1 0 1 222332222222222222334444444333 35679999
Q ss_pred HHHHHHHHHHHHHHhCCCccC-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchh---hHH---HhhhChHHHH
Q 000167 145 VVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV---KTI---LFEKMRDTMK 217 (1972)
Q Consensus 145 ~~~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l---~~~---l~~~Lk~~q~ 217 (1972)
+-.|+.++.++..-.|..+++ ++++++.+.+++.|...-||=.+...+-.++...|+=-+ ... |.+.....-=
T Consensus 334 RhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrg 413 (975)
T COG5181 334 RHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRG 413 (975)
T ss_pred hchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999998876 799999999999999999999988888888888886211 110 1111111111
Q ss_pred HHHHHHHHhccCCCCCCc-------chhhhhhHhhhhhccccCCCCCCCCCCC---------CCCCCCCCCCCCCCcccc
Q 000167 218 KELEVELVNVSGTARPTR-------KIRAEQDKELGQELISEDVGPGPSEEST---------ADVPPEIDEYELVDPVDI 281 (1972)
Q Consensus 218 keLe~~f~k~~~~~~P~R-------~~rs~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~iD~~dl~~~vdI 281 (1972)
++|-..+ |.-|..-|.. ++|.... -.-.+.. .++++.. =...+.++|+-+.+.|
T Consensus 414 k~l~sfL-kA~g~iiplm~peYa~h~tre~m~-iv~ref~------spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v-- 483 (975)
T COG5181 414 KELVSFL-KAMGFIIPLMSPEYACHDTREHME-IVFREFK------SPDEEMKKDLLVVERICDKVGTDTPWKLRDQV-- 483 (975)
T ss_pred chHHHHH-HHhccccccCChHhhhhhHHHHHH-HHHHHhC------CchhhcchhHHHHHHHHhccCCCCHHHHHHhh--
Confidence 1121111 1112222211 0111100 0000000 0000000 0011223444333322
Q ss_pred cccCcccchhhhhccCChHHHHHH---------HHH--HHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 000167 282 LTPLEKSGFWEGVKATKWSERKDA---------VAE--LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIG 350 (1972)
Q Consensus 282 l~kl~~~~f~~~l~s~kWkeR~ea---------L~~--L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~ 350 (1972)
. +.| -+..|.+|.+. +.. +.+.... ..+++.+..-+.|.--.-+..++.++.
T Consensus 484 ----~-pef----F~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~--------~~v~~kil~~~~De~ep~r~m~a~~vs 546 (975)
T COG5181 484 ----S-PEF----FSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD--------PRVSRKILEYYSDEPEPYRKMNAGLVS 546 (975)
T ss_pred ----c-HHh----hchHHHhhhcccccccceeehhHHHHHHHcCC--------hHHHHHHHhhccCCcchhhhhhhHHHH
Confidence 1 244 35679888765 111 1112111 234555555566666556666667777
Q ss_pred HHHHHhhh-chh-hhhhhHHHHHHHHhccCcHHHHH------HHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHH
Q 000167 351 NLARGLRT-HFS-GSSRFLLPVLLEKLKEKKPTVAE------SLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSL 422 (1972)
Q Consensus 351 ~La~~L~~-~f~-~~~~~llp~LL~klkdkk~~V~~------aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~ 422 (1972)
.+...++. +|+ .....++-.++..|.+....+.- +...++.... .-.+..|+..++.-|+||.|.+|+.
T Consensus 547 ri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~---kp~l~~ivStiL~~L~~k~p~vR~~ 623 (975)
T COG5181 547 RIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRG---KPHLSMIVSTILKLLRSKPPDVRIR 623 (975)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhcc---CcchHHHHHHHHHHhcCCCccHHHH
Confidence 77776653 454 55667788888888776543321 1112222221 2457789999999999999999998
Q ss_pred HHHHHHHH---HHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHH
Q 000167 423 TLNWVTFC---IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499 (1972)
Q Consensus 423 ~l~~L~~~---l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~ 499 (1972)
++..+..+ +..|.... .+..+--+|...|+.-+|+|=-.-..|+..+..+.|.+.+
T Consensus 624 aadl~~sl~~vlk~c~e~~---~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m------------------ 682 (975)
T COG5181 624 AADLMGSLAKVLKACGETK---ELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM------------------ 682 (975)
T ss_pred HHHHHHHHHHHHHhcchHH---HHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc------------------
Confidence 87776654 33343322 2233445666777777777644444444444444443211
Q ss_pred HhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 500 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTE 579 (1972)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~ 579 (1972)
.||..
T Consensus 683 ----------------------------------------------qpPi~----------------------------- 687 (975)
T COG5181 683 ----------------------------------------------QPPIS----------------------------- 687 (975)
T ss_pred ----------------------------------------------CCchh-----------------------------
Confidence 01100
Q ss_pred CCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHH
Q 000167 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQV 659 (1972)
Q Consensus 580 ~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV 659 (1972)
+++| .+. |-++..+.+|
T Consensus 688 --------------------~ilP-~lt------------------------------------------PILrnkh~Kv 704 (975)
T COG5181 688 --------------------GILP-SLT------------------------------------------PILRNKHQKV 704 (975)
T ss_pred --------------------hccc-ccc------------------------------------------HhhhhhhHHH
Confidence 0000 000 1112223344
Q ss_pred HHHHHHHHHHHHHHcCCC-c-hhhHHHHHHHHHhhhcc-hh-hhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHH
Q 000167 660 QQQVIEVINYLAATATKF-P-KKCVVLCLLGISERVAD-IK-TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735 (1972)
Q Consensus 660 ~~~~Le~l~~l~~~~~~~-~-~~~~~~il~~LveKlgd-~K-~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~ 735 (1972)
....+.++..+..+.+.. + +.|+-.| =.|+|-|.. .| .|..|.+++.-++++++|+-|+..++..+. ...-..|
T Consensus 705 ~~nti~lvg~I~~~~peyi~~rEWMRIc-feLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk-vqeRq~R 782 (975)
T COG5181 705 VANTIALVGTICMNSPEYIGVREWMRIC-FELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK-VQERQQR 782 (975)
T ss_pred hhhHHHHHHHHHhcCcccCCHHHHHHHH-HHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch-HHHHHhh
Confidence 444445555555544432 2 2333333 356665544 33 789999999999999999999999998872 1111122
Q ss_pred HHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhc
Q 000167 736 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (1972)
Q Consensus 736 ~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek 815 (1972)
..+--.++-+-+-.|.- .+++.+..- ...++.+|.+...+.++-||.++|+.-++|.-.
T Consensus 783 vctsvaI~iVae~cgpf-----sVlP~lm~d-Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~--------------- 841 (975)
T COG5181 783 VCTSVAISIVAEYCGPF-----SVLPTLMSD-YETPEANVQNGVLKAMCFMFEYIGQASLDYVYS--------------- 841 (975)
T ss_pred hhhhhhhhhhHhhcCch-----hhHHHHHhc-ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 22222333333333432 345555444 788899999999999999999999876666422
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhh
Q 000167 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895 (1972)
Q Consensus 816 ~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~e 895 (1972)
|+|-+.+.+.|.+---|..|+.-+.-+.-.+ +.
T Consensus 842 --------------------------------------itPlleDAltDrD~vhRqta~nvI~Hl~Lnc-----~g---- 874 (975)
T COG5181 842 --------------------------------------ITPLLEDALTDRDPVHRQTAMNVIRHLVLNC-----PG---- 874 (975)
T ss_pred --------------------------------------hhHHHHhhhcccchHHHHHHHHHHHHHhcCC-----CC----
Confidence 3343444555556666666666665554321 11
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHH
Q 000167 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY 975 (1972)
Q Consensus 896 L~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~ 975 (1972)
-.-+..+..++..+.-..-|..+.|.++..++++.+...+|...++.+
T Consensus 875 --------------------------------tg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Y 922 (975)
T COG5181 875 --------------------------------TGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKY 922 (975)
T ss_pred --------------------------------cccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 111122223333444445578899999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHH
Q 000167 976 VTTALTDAKLGAEGRKDLFDWL 997 (1972)
Q Consensus 976 l~~~L~~~~~~~~~R~~~l~~L 997 (1972)
+...|=++ +..+|..-|.-.
T Consensus 923 v~qGLFHP--s~~VRk~ywtvy 942 (975)
T COG5181 923 VQQGLFHP--SSTVRKRYWTVY 942 (975)
T ss_pred HHHhccCc--hHHHHHHHHHHH
Confidence 99999876 456777665544
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-07 Score=109.98 Aligned_cols=500 Identities=13% Similarity=0.117 Sum_probs=289.8
Q ss_pred HHHhc-ccCHHHHHHHHHHHHHHHHHhhhchh--hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHH
Q 000167 331 KKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED 407 (1972)
Q Consensus 331 ~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~--~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~ 407 (1972)
....+ +....|+..|++|+-.=..-.+..|. -....++....+........+..++..|+..++.-......-.++.
T Consensus 183 ~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~ 262 (858)
T COG5215 183 MGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN 262 (858)
T ss_pred HhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 77777888888888775555566665 2355677888888888889999999999999875312233333333
Q ss_pred -----HHHHhhcCChHHHHHHHHHHHHHHHh-cChhH--------------HH-HhhhhHHHHHHHHhcC-------CCh
Q 000167 408 -----VKTSVKNKVPLVRSLTLNWVTFCIET-SSKAA--------------VL-KVHKDYVPICMECLND-------GTP 459 (1972)
Q Consensus 408 -----l~~~l~~Knp~vR~~~l~~L~~~l~~-~~~~~--------------l~-~~l~~l~p~l~k~l~D-------s~~ 459 (1972)
...++++.|-+|+.++..|-..+.+. ..-.- +. ...+.++|.|.++|.. -+=
T Consensus 263 aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdW 342 (858)
T COG5215 263 ALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDW 342 (858)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 23567789999999999988555443 21110 00 1234566666666622 122
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccc
Q 000167 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA 539 (1972)
Q Consensus 460 ~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~ 539 (1972)
++-.+|..||..|....|+..++|.+
T Consensus 343 n~smaA~sCLqlfaq~~gd~i~~pVl------------------------------------------------------ 368 (858)
T COG5215 343 NPSMAASSCLQLFAQLKGDKIMRPVL------------------------------------------------------ 368 (858)
T ss_pred chhhhHHHHHHHHHHHhhhHhHHHHH------------------------------------------------------
Confidence 35556666776666666655443211
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHH
Q 000167 540 SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 619 (1972)
Q Consensus 540 s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl 619 (1972)
+-+.+.+++.+|..|.
T Consensus 369 ----------------------------------------------------------------~FvEqni~~~~w~nre 384 (858)
T COG5215 369 ----------------------------------------------------------------GFVEQNIRSESWANRE 384 (858)
T ss_pred ----------------------------------------------------------------HHHHHhccCchhhhHH
Confidence 1123456777999999
Q ss_pred HHHHHHHHHHHhcccc--chh-HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcch
Q 000167 620 EAISSLRQQVEAVQNL--DQS-VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI 696 (1972)
Q Consensus 620 ~a~e~L~~~v~~~~~~--~~~-~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~ 696 (1972)
+|+..+++.+++.... ... .+.+..++. ...|+-..|.. +..+|+..|.+.+.+.
T Consensus 385 aavmAfGSvm~gp~~~~lT~~V~qalp~i~n---~m~D~~l~vk~-------------------ttAwc~g~iad~va~~ 442 (858)
T COG5215 385 AAVMAFGSVMHGPCEDCLTKIVPQALPGIEN---EMSDSCLWVKS-------------------TTAWCFGAIADHVAMI 442 (858)
T ss_pred HHHHHhhhhhcCccHHHHHhhHHhhhHHHHH---hcccceeehhh-------------------HHHHHHHHHHHHHHHh
Confidence 9999999998875431 111 111111111 12233333332 3344444444333321
Q ss_pred hhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCC--CC--h----hhHHHHHHh-cC
Q 000167 697 KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH--LK--L----KDLIDFCKD-TG 767 (1972)
Q Consensus 697 K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~--l~--~----k~li~~l~~-~g 767 (1972)
-.. +.++ ..+.+..+-++ ..+|++...|......++..|.... ++ + ..++.-+.+ ..
T Consensus 443 i~p----------~~Hl--~~~vsa~liGl--~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~ 508 (858)
T COG5215 443 ISP----------CGHL--VLEVSASLIGL--MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTE 508 (858)
T ss_pred cCc----------cccc--cHHHHHHHhhh--hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence 000 0001 11233333333 4678888888888888888776432 10 1 122222221 01
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCc
Q 000167 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR 847 (1972)
Q Consensus 768 L~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lpr 847 (1972)
+.....+.|.++...|++|..+..+.+.+.+.++-.-.++.|+.-..-.... .. .+|..
T Consensus 509 ~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~--------l~-----------~eD~~-- 567 (858)
T COG5215 509 LALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI--------LA-----------TEDQL-- 567 (858)
T ss_pred hhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh--------hh-----------hHHHH--
Confidence 2234456899999999999999988888877777777777666544321100 00 00000
Q ss_pred ccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccch-HHHHHHHHHHHHHHHHHc
Q 000167 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN-KNLVMATLITLGAVASAM 926 (1972)
Q Consensus 848 vdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN-~~V~~~Al~~l~~La~al 926 (1972)
+..++.. .-+.-+..++....+.|.+.. ..|+..|...|.... ..+-......|+.++..+
T Consensus 568 ------~~~elqS-----------N~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 568 ------LVEELQS-----------NYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAISALSTSL 629 (858)
T ss_pred ------HHHHHHH-----------HHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence 0111111 122345566654444455542 448888888775542 334456678899999999
Q ss_pred ChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000167 927 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1972)
Q Consensus 927 g~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1972)
+..|++|+..|+|-+.+.|......|...|..-+..++..++-+- .+ ..+.+ ..-|.+++..
T Consensus 630 ~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df-~~-y~d~~-------------ms~LvQ~lss--- 691 (858)
T COG5215 630 EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF-NI-YADVL-------------MSSLVQCLSS--- 691 (858)
T ss_pred HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH-HH-HHHHH-------------HHHHHHHhcC---
Confidence 999999999999999999999999999999888888877766211 11 11111 1112222221
Q ss_pred CCChhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 1007 FPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 1007 ~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
+.....++| +++|+.|-...+-.+-+..|..+|..
T Consensus 692 -~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L 727 (858)
T COG5215 692 -EATHRDLKPAILSVFGDIALAIGANFESYLDMIMML 727 (858)
T ss_pred -hhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 122345666 77777777666666666666666543
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.5e-08 Score=116.07 Aligned_cols=379 Identities=17% Similarity=0.210 Sum_probs=259.3
Q ss_pred cHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchh--HHHHHHHHhcC-CCCccchHHHHHHHHHHHHHHHHHcCCCch
Q 000167 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (1972)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~--~~~lv~~L~~~-p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (1972)
++.+..+|.|+-+..|.+|.-+++.++++.-..+.. ..-++..|... -.-.+.|. ...+|-.+...+-..+.-..
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~--rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANM--RKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccc--ccchHHHHHHHHHHhccccH
Confidence 456889999999999999999999999883222222 22333333210 00012221 12444444433333333223
Q ss_pred hhHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhcChh------HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCC
Q 000167 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (1972)
Q Consensus 680 ~~~~~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~~~------~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~ 751 (1972)
.+...++++++..++|. ++|--|.+.|..++.....+ .++..+++.. .+...-|+ ++.+.+..++++.-.
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kls-aDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLS-ADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHh-cCCccccc-cHHHHHHHHHHHhcc
Confidence 37788999999999985 78999999999999876543 3455555543 33333333 334445555554432
Q ss_pred ---CCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000167 752 ---SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (1972)
Q Consensus 752 ---~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~ 828 (1972)
..+++..+++.+..- +-..||.+|..-..-+..|+..-+-.+-.|+.+
T Consensus 158 e~~~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~---------------------------- 208 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPS---------------------------- 208 (675)
T ss_pred ccccccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchH----------------------------
Confidence 257888999999986 889999999887777766664433222233322
Q ss_pred ccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCC--ChhhHHHHHHhcccc
Q 000167 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA--GTGELFGGLRGRLYD 906 (1972)
Q Consensus 829 r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~--~~~eL~~~L~~~L~D 906 (1972)
+.+.++..++|.+-.+|.-.=..+.+++.+- +-.|. +|++.+..|...+..
T Consensus 209 -------------------------~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI--~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 209 -------------------------LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI--RSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred -------------------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH--hcCccccCcccchhhccccccC
Confidence 3345667777777777755444455555431 11221 478999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC---------chhhHHHH
Q 000167 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH---------LDKMVPYV 976 (1972)
Q Consensus 907 sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~-~Vr~Aa~~aL~~i~~~~~---------l~~ll~~l 976 (1972)
++.-+...|+.+|.++..--|+++-+|...++..++.++.|+.. .++..+...-+.+...++ +..+++.+
T Consensus 262 s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999877 577666555444444432 33677778
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Q 000167 977 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1972)
Q Consensus 977 ~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~ 1043 (1972)
...+.+. +-+.|.++++|+.-...+.+.. -+..++...+.+.|.|++.+|-..+-..+..++..-
T Consensus 342 ~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 342 TKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 8888876 5789999999999888777762 244555666899999999999999988888887543
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.6e-07 Score=110.26 Aligned_cols=620 Identities=16% Similarity=0.164 Sum_probs=331.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhc-
Q 000167 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN- 414 (1972)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~- 414 (1972)
|....+....-.+|..|+...|=.|. +..+=--+..+.+-||+-...|...+..+ .++.+++|.|.....+
T Consensus 257 ded~~~r~~g~eii~nL~~~~Gl~~~------vs~mrpDi~~~deYVRnvt~ra~~vva~a--lgv~~llpfl~a~c~Sr 328 (975)
T COG5181 257 DEDLKRRCMGREIILNLVYRCGLGFS------VSSMRPDITSKDEYVRNVTGRAVGVVADA--LGVEELLPFLEALCGSR 328 (975)
T ss_pred CccHHHhcccHHHHHHHHHHhcccee------eeeccCCcccccHHHHHHHHHHHHHHHHh--hCcHHHHHHHHHHhcCc
Confidence 44455555555555555553332111 01111113345667777777777777775 7889999999887775
Q ss_pred CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc---hhHHHhHhhccHH
Q 000167 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDDV 491 (1972)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge---~~~~~~l~~Ld~~ 491 (1972)
|+|+-|..+......+-.-.+.+. ..++..++..+.+++.|....||--+..+|..+.+.+|. +.|+..+.-|-..
T Consensus 329 kSw~aRhTgiri~qqI~~llG~s~-l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g 407 (975)
T COG5181 329 KSWEARHTGIRIAQQICELLGRSR-LSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEG 407 (975)
T ss_pred cchhhhchhhHHHHHHHHHhCccH-HhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 589999877776665544444443 356788999999999999999999999999999998774 3344333332211
Q ss_pred HH----HHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCccc-ccccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 492 RR----NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKK 566 (1972)
Q Consensus 492 ~~----kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~-~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~ 566 (1972)
.+ +-+...++..|-.-|-..|.-.- +. +.+-. -+.... +.|-
T Consensus 408 ~~~hrgk~l~sfLkA~g~iiplm~peYa~-----h~----tre~m~iv~ref------~spd------------------ 454 (975)
T COG5181 408 ASQHRGKELVSFLKAMGFIIPLMSPEYAC-----HD----TREHMEIVFREF------KSPD------------------ 454 (975)
T ss_pred HHhcCCchHHHHHHHhccccccCChHhhh-----hh----HHHHHHHHHHHh------CCch------------------
Confidence 00 01111111111111000000000 00 00000 000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhc----cCcHHHHHhhhcCChHHHHHHHHHHHHHH-------Hhcccc
Q 000167 567 DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS----LIPADTVGQLKSAVWKERLEAISSLRQQV-------EAVQNL 635 (1972)
Q Consensus 567 ~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~----ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v-------~~~~~~ 635 (1972)
++.-+.-+-.+..++.... ++-.++.--+++.-|..|.++-....+.+ ..+...
T Consensus 455 ---------------eemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~ 519 (975)
T COG5181 455 ---------------EEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD 519 (975)
T ss_pred ---------------hhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC
Confidence 0000000000111111111 11234445577888999988844333222 111111
Q ss_pred chhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHHHHhhhcchhh--------hHHHHHH
Q 000167 636 DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKT--------RAHAMKC 705 (1972)
Q Consensus 636 ~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~--~~~~~~~~~il~~LveKlgd~K~--------r~~a~~~ 705 (1972)
....+-++.++ +|.--.-.....+++..++...+ .|.++....++..++..+...-+ -....-.
T Consensus 520 ~~v~~kil~~~------~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vs 593 (975)
T COG5181 520 PRVSRKILEYY------SDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVS 593 (975)
T ss_pred hHHHHHHHhhc------cCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeee
Confidence 11122233332 22211111222223333333333 24444444444444443332110 0011111
Q ss_pred HHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHH---HhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHH
Q 000167 706 LTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE---DFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782 (1972)
Q Consensus 706 L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~---~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~l 782 (1972)
|...+..+ ...+++.++..+ .+|.|.||..++..++.+.. ..|-.. .+..+--.+-.. ++...|+|--.-+++
T Consensus 594 l~~r~kp~-l~~ivStiL~~L-~~k~p~vR~~aadl~~sl~~vlk~c~e~~-~l~klg~iLyE~-lge~ypEvLgsil~A 669 (975)
T COG5181 594 LEFRGKPH-LSMIVSTILKLL-RSKPPDVRIRAADLMGSLAKVLKACGETK-ELAKLGNILYEN-LGEDYPEVLGSILKA 669 (975)
T ss_pred hhhccCcc-hHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHhcchHH-HHHHHhHHHHHh-cCcccHHHHHHHHHH
Confidence 11111111 224566666665 89999999988887666554 333211 111222234454 888999999999999
Q ss_pred HHHHHHhhC-----hhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHH
Q 000167 783 LGALHKFVG-----PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPT 857 (1972)
Q Consensus 783 l~~Ly~~~G-----~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ 857 (1972)
++.+|..+| |.+...|..+.|.+.+ .-+|+...+ ...+-. . ...+.+.++.-+-. .|.=+
T Consensus 670 i~~I~sv~~~~~mqpPi~~ilP~ltPILrn----kh~Kv~~nt----i~lvg~---I---~~~~peyi~~rEWM-RIcfe 734 (975)
T COG5181 670 ICSIYSVHRFRSMQPPISGILPSLTPILRN----KHQKVVANT----IALVGT---I---CMNSPEYIGVREWM-RICFE 734 (975)
T ss_pred HHHHhhhhcccccCCchhhccccccHhhhh----hhHHHhhhH----HHHHHH---H---HhcCcccCCHHHHH-HHHHH
Confidence 999988776 3455555555555443 333332100 000000 0 00000011110000 13446
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhH
Q 000167 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 937 (1972)
Q Consensus 858 ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~l 937 (1972)
|++.+.+.|=.+|..|.+.+.-|- +.|.| .+++.+|..-|+-.....+.-+--.|+-+++..| +| .+
T Consensus 735 Lvd~Lks~nKeiRR~A~~tfG~Is----~aiGP---qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg----pf--sV 801 (975)
T COG5181 735 LVDSLKSWNKEIRRNATETFGCIS----RAIGP---QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG----PF--SV 801 (975)
T ss_pred HHHHHHHhhHHHHHhhhhhhhhHH----hhcCH---HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC----ch--hh
Confidence 777777777788999999887664 34555 6788888776643333222222222333333333 22 67
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC---
Q 000167 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP--- 1008 (1972)
Q Consensus 938 lp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~--- 1008 (1972)
+|.++.-..-...+|++-...++.-|++.+| +-.+.|.|.++|.+. ++.-|+.+.+.+.-..-+.+...
T Consensus 802 lP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr--D~vhRqta~nvI~Hl~Lnc~gtg~ed 879 (975)
T COG5181 802 LPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR--DPVHRQTAMNVIRHLVLNCPGTGDED 879 (975)
T ss_pred HHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc--chHHHHHHHHHHHHHhcCCCCcccHH
Confidence 9999999998999999999999999999987 345788889999876 57778888777764444443321
Q ss_pred ChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000167 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1972)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1972)
...+++.-+...+-|..+-|-.+..+++..|..++|...|++++
T Consensus 880 a~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv 923 (975)
T COG5181 880 AAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYV 923 (975)
T ss_pred HHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 12344445777889999999999999999999999999999987
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.7e-07 Score=109.55 Aligned_cols=404 Identities=14% Similarity=0.184 Sum_probs=275.1
Q ss_pred HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHH
Q 000167 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (1972)
Q Consensus 717 ~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~ 795 (1972)
.++++++.-.....+...+.+.|..+..+.-..|.+... +..+++-+..+ +.+++..||.-|-+.+-.+.+....++.
T Consensus 42 k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c-f~D~d~~vRyyACEsLYNiaKv~k~~v~ 120 (675)
T KOG0212|consen 42 KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC-FSDQDSQVRYYACESLYNIAKVAKGEVL 120 (675)
T ss_pred HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh-ccCccceeeeHhHHHHHHHHHHhccCcc
Confidence 345555543333333333458888888887777775322 44556556664 9999999999998877777666665665
Q ss_pred hhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHH
Q 000167 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1972)
Q Consensus 796 ~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale 875 (1972)
.|++.+-.++. |+...+- ..+|. +. +++..
T Consensus 121 ~~Fn~iFdvL~--------klsaDsd----~~V~~----------~a--------------eLLdR-------------- 150 (675)
T KOG0212|consen 121 VYFNEIFDVLC--------KLSADSD----QNVRG----------GA--------------ELLDR-------------- 150 (675)
T ss_pred cchHHHHHHHH--------HHhcCCc----ccccc----------HH--------------HHHHH--------------
Confidence 56544332222 2211000 00000 00 11110
Q ss_pred HHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHH
Q 000167 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (1972)
Q Consensus 876 ~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~A 955 (1972)
.+..++.+. .-+-+ ..++++.|+.|+.+.|...++--+.+|..+-..-+-+|-.|+..+++++++.|+|+...||+-
T Consensus 151 LikdIVte~--~~tFs-L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~ 227 (675)
T KOG0212|consen 151 LIKDIVTES--ASTFS-LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTL 227 (675)
T ss_pred HHHHhcccc--ccccC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHH
Confidence 122233221 00222 489999999999999999999999999988877788889999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCCH
Q 000167 956 TLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSS 1026 (1972)
Q Consensus 956 a~~aL~~i~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~ 1026 (1972)
+..+|..+...+. .+.+++.+..-+.++ ++..+.-++.|+.+++.-.+.. .....++..+..|+.|...
T Consensus 228 ~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~ 305 (675)
T KOG0212|consen 228 TDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEE 305 (675)
T ss_pred HHHHHHHHHHHHhcCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCcc
Confidence 9999999987752 456677777777765 6899999999999988765542 2334455568889988777
Q ss_pred -HHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 000167 1027 -DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISS 1105 (1972)
Q Consensus 1027 -dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 1105 (1972)
.++..|+..-..++..++.+....-
T Consensus 306 ~~i~~~a~~~n~~l~~l~s~~~~~~~------------------------------------------------------ 331 (675)
T KOG0212|consen 306 MSIKEYAQMVNGLLLKLVSSERLKEE------------------------------------------------------ 331 (675)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccc------------------------------------------------------
Confidence 5888887655555554443211100
Q ss_pred CCCCCCCCCCCcccccchhhhhhhhccccCCCChHHhhhhhcccccccCCChhhHHHHHHHHHHhhhHHHHHhhcCccHH
Q 000167 1106 RVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFK 1185 (1972)
Q Consensus 1106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k 1185 (1972)
.+ |. .-+| -+...+++..-.
T Consensus 332 --------------------id------------------------~~----~ii~------------vl~~~l~~~~~~ 351 (675)
T KOG0212|consen 332 --------------------ID------------------------YG----SIIE------------VLTKYLSDDREE 351 (675)
T ss_pred --------------------cc------------------------hH----HHHH------------HHHHHhhcchHH
Confidence 00 00 0111 133344555556
Q ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhh
Q 000167 1186 KQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1265 (1972)
Q Consensus 1186 ~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~ 1265 (1972)
.|+++++=+.-.....+..++.+.|-+|--+...+.|+.-.|+.+.|+.+..+..--..-+ -..|+-.|++..
T Consensus 352 tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~-------~~~fl~sLL~~f 424 (675)
T KOG0212|consen 352 TRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPN-------LRKFLLSLLEMF 424 (675)
T ss_pred HHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccccc-------HHHHHHHHHHHH
Confidence 7888888888888888888888899899888889999999999999999998654333322 267888888888
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCccccHHHHH
Q 000167 1266 GHNIEKVREKMRELTKQIVNFYSATKTLPYIL 1297 (1972)
Q Consensus 1266 Gd~k~~vr~~v~~il~~~~~v~~~skvf~~l~ 1297 (1972)
-.-+--++.+--=|++++|...-+.+||..+.
T Consensus 425 ~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a 456 (675)
T KOG0212|consen 425 KEDTKLLEVRGNLIIRQLCLLLNAERIYRSIA 456 (675)
T ss_pred hhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHH
Confidence 77666677777778999999999999998753
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-06 Score=109.75 Aligned_cols=561 Identities=18% Similarity=0.136 Sum_probs=319.2
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 000167 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~ 373 (1972)
+...+-..|..+...+..+.-..+.... -..+++.+...+ |.+.-|...+..=++.+....+ -..|...++|.+..
T Consensus 91 ~~~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~ 166 (759)
T KOG0211|consen 91 LSNTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLEL 166 (759)
T ss_pred cCchhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHh
Confidence 3445666677777766655421111111 457788888887 7776665555444444443322 23566778888887
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhc---CCh-HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000167 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN---KVP-LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1972)
Q Consensus 374 klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~---Knp-~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1972)
.+-+....||+++.+++..+... ++-....+.+...+.. .-| +.|.-++..+..+....+...+ -..+.|.
T Consensus 167 l~~~eet~vr~k~ve~l~~v~~~--~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v---k~elr~~ 241 (759)
T KOG0211|consen 167 LATVEETGVREKAVESLLKVAVG--LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV---KRELRPI 241 (759)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH---HHHHHHH
Confidence 78888889999999999998864 3333333444433331 122 3455566666666655543222 2667788
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 000167 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEAS 529 (1972)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~ 529 (1972)
......|..+.||.++.+-++.+.++++..... ..+.+..
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~------------------------------------- 281 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTL------------------------------------- 281 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHH-------------------------------------
Confidence 889999999999999999999999888862111 0011100
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHh
Q 000167 530 ESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQ 609 (1972)
Q Consensus 530 ~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~ 609 (1972)
+..
T Consensus 282 -----------------------------------------------------------------------------~~L 284 (759)
T KOG0211|consen 282 -----------------------------------------------------------------------------IQL 284 (759)
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 000
Q ss_pred hhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 000167 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGI 689 (1972)
Q Consensus 610 L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~L 689 (1972)
+.+..=-.|+.|++.+.++...+...++....+...+.. -..|.+..|.-..-+....+....+. . ..-....+..
T Consensus 285 ~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~--~~~d~~~~v~~~~~~~~~~L~~~~~~-~-~~~~~~~~~~ 360 (759)
T KOG0211|consen 285 LRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQ--AVEDGSWRVSYMVADKFSELSSAVGP-S-ATRTQLVPPV 360 (759)
T ss_pred hhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH--HhcChhHHHHHHHhhhhhhHHHHhcc-c-cCcccchhhH
Confidence 111112235555555555444432221111111111100 11333333333333333222222221 0 0011223444
Q ss_pred Hhhhcchh--hhHHHHHHHHHHHhhcC----hhHHHHHHHHhh---hhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHH
Q 000167 690 SERVADIK--TRAHAMKCLTTFSEAVG----PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 760 (1972)
Q Consensus 690 veKlgd~K--~r~~a~~~L~~l~e~~~----~~~vl~~l~~~l---~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li 760 (1972)
..-++|.. .|.++..-...++...+ ++...+.+++.+ ..+.|+.|+......+......+|.. -.+..++
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~-~ti~~ll 439 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE-RTISELL 439 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC-cCccccC
Confidence 44455543 23333333334444333 333333333222 24566667766665555554445432 1233444
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCC
Q 000167 761 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840 (1972)
Q Consensus 761 ~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~ 840 (1972)
+..... +.+-.+.||..-+..+..+ +.+... -
T Consensus 440 p~~~~~-l~de~~~V~lnli~~ls~~---------------------------~~v~~v------~-------------- 471 (759)
T KOG0211|consen 440 PLLIGN-LKDEDPIVRLNLIDKLSLL---------------------------EEVNDV------I-------------- 471 (759)
T ss_pred hhhhhh-cchhhHHHHHhhHHHHHHH---------------------------HhccCc------c--------------
Confidence 444444 5666666665444322111 111100 0
Q ss_pred CCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHH
Q 000167 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLG 920 (1972)
Q Consensus 841 ~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~ 920 (1972)
|.+ -++..+.+.+.+...|.+|+.|.+.++.+-.++..-...+.. ..+...+...+.|--..++..|...+.
T Consensus 472 g~~-----~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~---~~~~~l~~~~l~d~v~~Ir~~aa~~l~ 543 (759)
T KOG0211|consen 472 GIS-----TVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD---EKLAELLRTWLPDHVYSIREAAARNLP 543 (759)
T ss_pred cch-----hhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh---HHHHHHHHhhhhhhHHHHHHHHHHHhH
Confidence 000 011112334555556679999999999999888643111111 223344455677777778899999999
Q ss_pred HHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhHHHHHHHH
Q 000167 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDW 996 (1972)
Q Consensus 921 ~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l----~~ll~~l~~~L~~~~~~~~~R~~~l~~ 996 (1972)
.++...|..+ +...++|.++...++.+-.+|.+...++..++..+|- +.++|.+.....+. +|.+|..++..
T Consensus 544 ~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~ 619 (759)
T KOG0211|consen 544 ALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKH 619 (759)
T ss_pred HHHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHH
Confidence 9999999554 4568899999999998888999999999999999984 45677666666666 68999999999
Q ss_pred HHHHhccCCCCCChhhhHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHcChh
Q 000167 997 LSKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQE 1046 (1972)
Q Consensus 997 L~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~dVR~aA~~~l~~l~~~~G~~ 1046 (1972)
|...+..... +.....+.|+..+| .|.+.+||-.|..++..+..+.-+.
T Consensus 620 L~~i~~~L~~-~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~ 669 (759)
T KOG0211|consen 620 LPKILKLLDE-SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLES 669 (759)
T ss_pred HHHHHhhcch-HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhh
Confidence 9877665443 23456777766655 7999999999999999887665443
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=0.0017 Score=86.66 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHH--HH---cChhh-HhhhhhHHHHHH
Q 000167 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVA--SA---MGPAV-EKSSKGVLSDIL 942 (1972)
Q Consensus 869 ~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La--~a---lg~~~-~~~~~~llp~ll 942 (1972)
.|...+..+..|+...+.....-.+..+..++.-. +|-|...++.|..+|-.|+ .. .|.+= ...+..+++.|.
T Consensus 713 ~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Is 791 (1176)
T KOG1248|consen 713 AQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIIS 791 (1176)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence 45566666666665432111111112333333333 8888888889988888887 21 12211 225566666666
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCChhh
Q 000167 943 KCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAH 1012 (1972)
Q Consensus 943 ~~L~D~k~~Vr~Aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~~~~~~ 1012 (1972)
..+......++.+-+-++..++...+ +..++..+...|.+. +++++..+++++..++...+. .++...
T Consensus 792 agl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~~~ 869 (1176)
T KOG1248|consen 792 AGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHLEE 869 (1176)
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhHHH
Confidence 66666666666665777877776532 456677777778765 699999999999998888776 234444
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000167 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (1972)
Q Consensus 1013 ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~ 1070 (1972)
++.-++..+.|.+..+|.+....|..+++.+|.+.+..+++ .....+...|.+.
T Consensus 870 LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p----ee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 870 LLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP----EEDMKLLTNIRKR 923 (1176)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH----HHHHHHHHHHHHH
Confidence 55558888899999999999999999999999999998875 4445555555543
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.1e-05 Score=100.14 Aligned_cols=286 Identities=15% Similarity=0.179 Sum_probs=188.7
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC---CccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCch
Q 000167 127 DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA---KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP 203 (1972)
Q Consensus 127 ~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~---~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~ 203 (1972)
..+.+.|..+..+-||..+.+...||-..++.-|. .+...+.|......+|++.|.=+.+.|..-++-+|.--+.
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~-- 894 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS-- 894 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc--
Confidence 34556667788899999999999999999998884 2345678999999999999999888887777777754332
Q ss_pred hhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhh-ccccCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 000167 204 VKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQE-LISEDVGPGPSEESTADVPPEIDEYELVDPVDIL 282 (1972)
Q Consensus 204 l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl 282 (1972)
.++..+.+.|-..+-. |..+- .+..+ +.+ .+...-|..| ....+.-|
T Consensus 895 -------~~k~~LV~sL~~tl~~--Gkr~~------~~vs~-eTelFq~G~Lg~Tp-------~Gg~isTY--------- 942 (1702)
T KOG0915|consen 895 -------SLKKSLVDSLVNTLTG--GKRKA------IKVSE-ETELFQEGTLGKTP-------DGGKISTY--------- 942 (1702)
T ss_pred -------hhHHHHHHHHHHHHhc--ccccc------ceecc-chhcccCCcCCCCC-------CCCcchHH---------
Confidence 2333333444333321 21110 00000 000 0000000000 01112111
Q ss_pred ccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchh
Q 000167 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS 361 (1972)
Q Consensus 283 ~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (1972)
++|..|++. +.. .+++-.+...-+ .+-=+-...|+.-++.|+..-+...+
T Consensus 943 ------------------------KELc~LASd--l~q---PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~ 993 (1702)
T KOG0915|consen 943 ------------------------KELCNLASD--LGQ---PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLE 993 (1702)
T ss_pred ------------------------HHHHHHHhh--cCC---hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhh
Confidence 334444431 100 122222222222 11111245566667777777788899
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000167 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1972)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1972)
||.+.++|-|..-=-|..+.|++|....-++++.-. .-.+.+|+++++.+|.+|-|+||+.+|..|..+++..+..
T Consensus 994 p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~ 1073 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFD 1073 (1702)
T ss_pred hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChH
Confidence 999999999998888999999988877777776420 1225678999999999999999999999999999998887
Q ss_pred HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000167 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 438 ~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 475 (1972)
.+.+.++.+-.++...++|-...||+||-.+...+.++
T Consensus 1074 ~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1074 QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999998877655544
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=116.83 Aligned_cols=183 Identities=18% Similarity=0.227 Sum_probs=159.4
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 000167 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (1972)
-+..+.+.+|....++|..|+.|.. ++......+.+++-.+.+-++..|+.|...||.|++.|+..+.+.+......++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999874 666666778888888889999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHH
Q 000167 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYV 447 (1972)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~ 447 (1972)
-.|+.+-.+.|..||+++..||.+++.+ .++..+++.|..+++|.||.+|...+..+.+|+.+.+- .....+....+
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999987 88899999999999999999999887777777766542 22334567788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
+.+..-+.|.-|++|++|.-.+.....
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~~~~~~ 277 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVRLELKE 277 (334)
T ss_pred HHHHhhhcccccccccchhHHHHhHHH
Confidence 999999999999999999876654443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-06 Score=117.75 Aligned_cols=268 Identities=19% Similarity=0.154 Sum_probs=157.2
Q ss_pred HHHHhhhcc--hhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 000167 687 LGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764 (1972)
Q Consensus 687 ~~LveKlgd--~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~ 764 (1972)
+.|++.|.| +.+|..|.+.|..+. +.-+++.|...+ ++.++.||..++..|..+.+.... .+.+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~ 690 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------APALR 690 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------hHHHH
Confidence 344444544 357777766666543 333555566554 777888888888777666432211 12233
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHhhCh--hHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCC
Q 000167 765 DTGLQSSAAATRNATIKLLGALHKFVGP--DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (1972)
Q Consensus 765 ~~gL~~sn~~VR~aA~~ll~~Ly~~~G~--~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~ 842 (1972)
.. |++.++.||.+|+..|+.+.. +. .+...|.+-.|.+....-..+.++
T Consensus 691 ~~-L~~~d~~VR~~A~~aL~~~~~--~~~~~l~~~L~D~d~~VR~~Av~aL~~~-------------------------- 741 (897)
T PRK13800 691 DH-LGSPDPVVRAAALDVLRALRA--GDAALFAAALGDPDHRVRIEAVRALVSV-------------------------- 741 (897)
T ss_pred HH-hcCCCHHHHHHHHHHHHhhcc--CCHHHHHHHhcCCCHHHHHHHHHHHhcc--------------------------
Confidence 44 677888888888888777641 11 111122222222211111111110
Q ss_pred CCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHH
Q 000167 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV 922 (1972)
Q Consensus 843 d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~L 922 (1972)
.. .+.++..+.|.++.+|..+.+.|..+-.. . ......|...++|.+..|+..|+..|+.+
T Consensus 742 ---~~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~-~~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 742 ---DD-------VESVAGAATDENREVRIAVAKGLATLGAG--------G-APAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ---cC-------cHHHHHHhcCCCHHHHHHHHHHHHHhccc--------c-chhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 00 12355667788888888888877655321 0 22345566777888888888887777655
Q ss_pred HHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 000167 923 ASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (1972)
Q Consensus 923 a~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~ 1002 (1972)
. .. ..+.+.++..|.|....||.+|..+|..+ +-...++.|...|.++ ++.+|.++..-|...
T Consensus 803 g----~~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~-- 865 (897)
T PRK13800 803 G----CP-----PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW-- 865 (897)
T ss_pred C----Cc-----chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc--
Confidence 1 11 22335577778888888888887777643 3345567777788766 578888888777652
Q ss_pred cCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHH
Q 000167 1003 GLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1972)
Q Consensus 1003 ~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~ 1037 (1972)
. ........+...++|.+.+||.+|..+|.
T Consensus 866 --~---~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 --P---GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred --C---CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 11223444667788888888888887774
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-05 Score=101.61 Aligned_cols=459 Identities=16% Similarity=0.154 Sum_probs=296.4
Q ss_pred hhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 000167 292 EGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (1972)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~L 371 (1972)
..+.+++-..|+=+.-.+..+.... ++-.--++..|.+=+.+.|..++..|+++++.++. ...++.++|.+
T Consensus 49 ~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~v 119 (526)
T PF01602_consen 49 KLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPDV 119 (526)
T ss_dssp CTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHHH
Confidence 3456788888887666666655311 11123366788888889999999999999999872 34567899999
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000167 372 LEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1972)
Q Consensus 372 L~klkdkk~~V~~aa~~aL~al~~~~~~~l~~-il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (1972)
.+.+.++++.||..|..|+..++......+.. +++.+...+.+++|.++..++..+..+ .+++......++.+...+
T Consensus 120 ~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L 197 (526)
T PF01602_consen 120 IKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRIL 197 (526)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHh
Confidence 99999999999999999999999862234455 789999999999999999999999887 444443335567778888
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHhCchhH-HHhHhhccHH----HHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCC
Q 000167 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDV----RRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 525 (1972)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~-~~~l~~Ld~~----~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~ 525 (1972)
.+.+.+.+|-++-...+++..+...-.+..- ..+++.+.+. ...-+.+++.-
T Consensus 198 ~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~----------------------- 254 (526)
T PF01602_consen 198 CQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRL----------------------- 254 (526)
T ss_dssp HHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred hhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHH-----------------------
Confidence 8888999999887777777644432211110 1222222211 11111111100
Q ss_pred CCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHH
Q 000167 526 VEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPAD 605 (1972)
Q Consensus 526 ~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~ 605 (1972)
...- ..+.+ ... .+-..
T Consensus 255 ----------------i~~l------------------------------------------~~~~~-~~~----~~~~~ 271 (526)
T PF01602_consen 255 ----------------IIKL------------------------------------------SPSPE-LLQ----KAINP 271 (526)
T ss_dssp ----------------HHHH------------------------------------------SSSHH-HHH----HHHHH
T ss_pred ----------------HHHh------------------------------------------hcchH-HHH----hhHHH
Confidence 0000 00001 111 12245
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHH
Q 000167 606 TVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1972)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~e~L~~~v~~~-~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~ 684 (1972)
+...|.++++..|.-+++.|..+.... .... .....+..+. .+.+..|...+++++..++.. ..+..
T Consensus 272 L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n~~~ 339 (526)
T PF01602_consen 272 LIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SNVKE 339 (526)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HHHHH
T ss_pred HHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cchhh
Confidence 778889999999999999998887664 2111 2233333332 366677899999999888864 46777
Q ss_pred HHHHHHhhhc---chhhhHHHHHHHHHHHhhcCh--hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhH
Q 000167 685 CLLGISERVA---DIKTRAHAMKCLTTFSEAVGP--GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 759 (1972)
Q Consensus 685 il~~LveKlg---d~K~r~~a~~~L~~l~e~~~~--~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~l 759 (1972)
++..|..-+. |...+..+...+..+++.+.+ ++.+..+++.+ ...+..+..+++..+..++...... -..+
T Consensus 340 Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~~~~ 415 (526)
T PF01602_consen 340 ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---REKI 415 (526)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---HHHH
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---hHHH
Confidence 8888887774 456888888999999997754 56788888875 5567788899999999998764321 1233
Q ss_pred HHHHHhcCCC-CCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCC
Q 000167 760 IDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 838 (1972)
Q Consensus 760 i~~l~~~gL~-~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~ 838 (1972)
+..+.+. +. -.++.++.++..++|+....... .+ ..+.++..+-+
T Consensus 416 l~~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~-----~~-~~~~~~~~l~~--------------------------- 461 (526)
T PF01602_consen 416 LKKLIEL-LEDISSPEALAAAIWILGEYGELIEN-----TE-SAPDILRSLIE--------------------------- 461 (526)
T ss_dssp HHHHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT-----TT-HHHHHHHHHHH---------------------------
T ss_pred HHHHHHH-HHHhhHHHHHHHHHhhhcccCCcccc-----cc-cHHHHHHHHHH---------------------------
Confidence 4444333 33 46788999999999987655543 00 11222222222
Q ss_pred CCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCC-ChhhHHHHHHhccc--cchHHHHHHH
Q 000167 839 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLRGRLY--DSNKNLVMAT 915 (1972)
Q Consensus 839 ~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~-~~~eL~~~L~~~L~--DsN~~V~~~A 915 (1972)
.+.+..-.+|...+..+.++... .... ...++...+..... +.|..|+..|
T Consensus 462 ----------------------~~~~~~~~vk~~ilt~~~Kl~~~----~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra 515 (526)
T PF01602_consen 462 ----------------------NFIEESPEVKLQILTALAKLFKR----NPENEVQNEILQFLLSLATEDSSDPEVRDRA 515 (526)
T ss_dssp ----------------------HHTTSHHHHHHHHHHHHHHHHHH----SCSTTHHHHHHHHHHCHHHHS-SSHHHHHHH
T ss_pred ----------------------hhccccHHHHHHHHHHHHHHHhh----CCchhhHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 22233335677777778777653 2221 22477777777776 7799999999
Q ss_pred HHHHHHHH
Q 000167 916 LITLGAVA 923 (1972)
Q Consensus 916 l~~l~~La 923 (1972)
...+..+-
T Consensus 516 ~~y~~ll~ 523 (526)
T PF01602_consen 516 REYLRLLN 523 (526)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88877653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.9e-05 Score=99.17 Aligned_cols=497 Identities=15% Similarity=0.154 Sum_probs=288.2
Q ss_pred hHhhhcCC--cHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhh---hHHH
Q 000167 57 FKKTVADS--NAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVD---VFLD 131 (1972)
Q Consensus 57 ~~k~v~Ds--N~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~~---~v~~ 131 (1972)
++++.... |..-+..++.-+..+.-. |.+.... .+.++.-+-+.+...|..+--.+..|.+. +++ -++.
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~-G~~~~~~----~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~~~~~l~~n 82 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMML-GYDISFL----FMEVIKLISSKDLELKRLGYLYLSLYLHE-DPELLILIIN 82 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHT-T---GST----HHHHHCTCSSSSHHHHHHHHHHHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCCCchH----HHHHHHHhCCCCHHHHHHHHHHHHHHhhc-chhHHHHHHH
Confidence 44555555 777777777766654433 3333322 33333332235777777776555555543 333 3467
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhh
Q 000167 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEK 211 (1972)
Q Consensus 132 ~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~ 211 (1972)
.|.+-+.|.||-++..++.+|..+. .. --...+++.+.+++.|+++.||..|..++..+|+...+ .+...+.
T Consensus 83 ~l~kdl~~~n~~~~~lAL~~l~~i~----~~-~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~-- 154 (526)
T PF01602_consen 83 SLQKDLNSPNPYIRGLALRTLSNIR----TP-EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVEDELI-- 154 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH-----SH-HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGGHH--
T ss_pred HHHHhhcCCCHHHHHHHHhhhhhhc----cc-chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHHHHH--
Confidence 7888899999999999999998754 21 11357899999999999999999999999999988544 2211110
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchh
Q 000167 212 MRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFW 291 (1972)
Q Consensus 212 Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~ 291 (1972)
+.+.
T Consensus 155 ----------------------------------------------------------------------------~~l~ 158 (526)
T PF01602_consen 155 ----------------------------------------------------------------------------PKLK 158 (526)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHh
Confidence 0122
Q ss_pred hhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh--hhHHH
Q 000167 292 EGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLP 369 (1972)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp 369 (1972)
..+.+.++..+..|+..+..+-..++....-...+++.|.+.+.+.+.-+....++++..++..-. ... ..+++
T Consensus 159 ~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~----~~~~~~~~i~ 234 (526)
T PF01602_consen 159 QLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP----EDADKNRIIE 234 (526)
T ss_dssp HHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH----HHHHHHHHHH
T ss_pred hhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh----hhhhHHHHHH
Confidence 224555566677777777776111111112245667777777788888777777777765543221 122 56788
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000167 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1972)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1972)
.++..+....+.|+=.+..++-.+... ...+..+++.+...+.++++.+|.-++..|..+....++. + ......
T Consensus 235 ~l~~~l~s~~~~V~~e~~~~i~~l~~~-~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~-v----~~~~~~ 308 (526)
T PF01602_consen 235 PLLNLLQSSSPSVVYEAIRLIIKLSPS-PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA-V----FNQSLI 308 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH-H----GTHHHH
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhcc-hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh-h----hhhhhh
Confidence 888888877777765555555444322 0113456777778888888999999888888776655222 2 222222
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 000167 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEAS 529 (1972)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~ 529 (1972)
+..+..|.+..||..+.+.+..++. ++.+...+..| .+++..
T Consensus 309 ~~~l~~~~d~~Ir~~~l~lL~~l~~---~~n~~~Il~eL--------~~~l~~--------------------------- 350 (526)
T PF01602_consen 309 LFFLLYDDDPSIRKKALDLLYKLAN---ESNVKEILDEL--------LKYLSE--------------------------- 350 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH-----HHHHHHHHHHH--------HHHHHH---------------------------
T ss_pred hheecCCCChhHHHHHHHHHhhccc---ccchhhHHHHH--------HHHHHh---------------------------
Confidence 3333448889998888777765543 33343333332 111100
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHh
Q 000167 530 ESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQ 609 (1972)
Q Consensus 530 ~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~ 609 (1972)
T Consensus 351 -------------------------------------------------------------------------------- 350 (526)
T PF01602_consen 351 -------------------------------------------------------------------------------- 350 (526)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCChHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 000167 610 LKSAVWKERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLG 688 (1972)
Q Consensus 610 L~s~~Wk~Rl~a~e~L~~~v~~~~~-~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~ 688 (1972)
..+-..|.+++..+..+...... .....+.++.++.. ++..+....+..+..++.+.+..... ++..
T Consensus 351 --~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~------~~~~~~~~~~~~i~~ll~~~~~~~~~----~l~~ 418 (526)
T PF01602_consen 351 --LSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI------SGDYVSNEIINVIRDLLSNNPELREK----ILKK 418 (526)
T ss_dssp --C--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC------TGGGCHCHHHHHHHHHHHHSTTTHHH----HHHH
T ss_pred --ccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh------ccccccchHHHHHHHHhhcChhhhHH----HHHH
Confidence 00111344444555544444222 12234556666542 22233445555555666655443222 3344
Q ss_pred HHhh---hcchhhhHHHHHHHHHHHhhcCh----hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHH
Q 000167 689 ISER---VADIKTRAHAMKCLTTFSEAVGP----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1972)
Q Consensus 689 LveK---lgd~K~r~~a~~~L~~l~e~~~~----~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~ 761 (1972)
+++. +.++..+..+.-++..+++.... ..++..+.... ..-++.++...+..+.++...++.... .+.++.
T Consensus 419 L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~-~~~~~~vk~~ilt~~~Kl~~~~~~~~~-~~~i~~ 496 (526)
T PF01602_consen 419 LIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENF-IEESPEVKLQILTALAKLFKRNPENEV-QNEILQ 496 (526)
T ss_dssp HHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHHHSCSTTH-HHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhh-ccccHHHHHHHHHHHHHHHhhCCchhh-HHHHHH
Confidence 4443 33445555555566666555443 23344444442 345788999999999999887664321 246777
Q ss_pred HHHhcCCC--CCchhHHHHHHHHHHHH
Q 000167 762 FCKDTGLQ--SSAAATRNATIKLLGAL 786 (1972)
Q Consensus 762 ~l~~~gL~--~sn~~VR~aA~~ll~~L 786 (1972)
++... .. +.|++||+-|...+.-|
T Consensus 497 ~~~~~-~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 497 FLLSL-ATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHCH-HHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHH-hccCCCCHHHHHHHHHHHHHH
Confidence 77765 55 88999999998876544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.4e-06 Score=115.27 Aligned_cols=242 Identities=20% Similarity=0.189 Sum_probs=168.6
Q ss_pred HHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhC--hhHH
Q 000167 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (1972)
Q Consensus 718 vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G--~~l~ 795 (1972)
.++.|+..+ .+.+|.||..++.+|... |. ...++.+..+ |.|.++.||.+|...|+.+-.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 455666665 799999999999998764 32 2466677777 999999999999999887743222 1233
Q ss_pred hhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHH
Q 000167 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1972)
Q Consensus 796 ~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale 875 (1972)
..|.+-.|.+....-..+..+.. . -+..|+..+.|+++.+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~-----------------------------~-----~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRA-----------------------------G-----DAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcc-----------------------------C-----CHHHHHHHhcCCCHHHHHHHHH
Confidence 33333233222222222221100 0 0134667899999999999999
Q ss_pred HHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHH
Q 000167 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (1972)
Q Consensus 876 ~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~A 955 (1972)
.|..+- . ...|...+.|.+..|+..++..|+.+...- ...++.++..++|..+.||.+
T Consensus 737 aL~~~~--------~------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD--------D------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc--------C------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHH
Confidence 987541 1 134566789999999999999888764321 122677888999999999999
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHH
Q 000167 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1972)
Q Consensus 956 a~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~ 1035 (1972)
|..+|..+.. ...+.+.+..+|.++ +|.+|..++..|... + ....+.+|..+|.|.+.+||.+|..+
T Consensus 795 A~~aLg~~g~---~~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l----~----~~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGC---PPDDVAAATAALRAS--AWQVRQGAARALAGA----A----ADVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCC---cchhHHHHHHHhcCC--ChHHHHHHHHHHHhc----c----ccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999877622 233456688888876 699999999888642 1 12345678999999999999999999
Q ss_pred HHHH
Q 000167 1036 IVEI 1039 (1972)
Q Consensus 1036 l~~l 1039 (1972)
|..+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9875
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0017 Score=79.83 Aligned_cols=147 Identities=17% Similarity=0.190 Sum_probs=108.2
Q ss_pred HHhcccCHHHHHHHHHHHHHHHH-----Hhh-----------hchhh-hhhhHHHHHHHHhccC-------cHHHHHHHH
Q 000167 332 KLITDVNIAVAVEAIQAIGNLAR-----GLR-----------THFSG-SSRFLLPVLLEKLKEK-------KPTVAESLT 387 (1972)
Q Consensus 332 k~l~D~N~~V~~~A~~~l~~La~-----~L~-----------~~f~~-~~~~llp~LL~klkdk-------k~~V~~aa~ 387 (1972)
..++..|-.|...|...-..++. .+- ..|.. .+..++|.||..+-.. .=++.-++.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 34557888887777665544443 111 12332 2456899999887432 224667888
Q ss_pred HHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHH
Q 000167 388 QTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (1972)
Q Consensus 388 ~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 466 (1972)
.||.-+... +-.-+..++..+-..+.+.+|.-|..+.-.+..++..-....+.+++++.+|.+...++|+.--|.+.+.
T Consensus 350 sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttA 429 (858)
T COG5215 350 SCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTA 429 (858)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHH
Confidence 898877765 2122345667777788899999999998888888877667778889999999999999999999999999
Q ss_pred HHHHHHHHHhCc
Q 000167 467 SVLAAIAKSVGM 478 (1972)
Q Consensus 467 ~~l~~l~~~~ge 478 (1972)
.|++.+..++.+
T Consensus 430 wc~g~iad~va~ 441 (858)
T COG5215 430 WCFGAIADHVAM 441 (858)
T ss_pred HHHHHHHHHHHH
Confidence 999999988775
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.4e-05 Score=100.71 Aligned_cols=293 Identities=14% Similarity=0.165 Sum_probs=193.4
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHHHhccc---cchhHHHH---HHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCch
Q 000167 606 TVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEIL---VRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (1972)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~---~~~~~~~l---v~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (1972)
....+.+..|.-|.+........-...+. .....+.+ ++.+ ..|+|..|.......+..+....+ ..
T Consensus 360 ~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l-----v~d~~~~vr~a~a~~~~~~~p~~~--k~ 432 (759)
T KOG0211|consen 360 VSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL-----VLDNALHVRSALASVITGLSPILP--KE 432 (759)
T ss_pred HHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH-----HhcccchHHHHHhccccccCccCC--cC
Confidence 44566777788888777666654433221 00011111 2222 257788887766555544333222 13
Q ss_pred hhHHHHHHHHHhhhcc--hhhhHHHHHHH---HHHHhhcChhHHHHHHHHhhh---hCCChHHHHHHHHHHHHHHHHhCC
Q 000167 680 KCVVLCLLGISERVAD--IKTRAHAMKCL---TTFSEAVGPGFIFERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGV 751 (1972)
Q Consensus 680 ~~~~~il~~LveKlgd--~K~r~~a~~~L---~~l~e~~~~~~vl~~l~~~l~---~~KnpKv~~e~l~~L~~~i~~fG~ 751 (1972)
+.+...+|..+..+-| +.++....+.+ ...-+..|...+.+.+++.+. ...+|+++.+.+.++..+..++|.
T Consensus 433 ~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~ 512 (759)
T KOG0211|consen 433 RTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGV 512 (759)
T ss_pred cCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhh
Confidence 4556666776666655 34565555333 333344566666666666542 345899999999999999999996
Q ss_pred CCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 000167 752 SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (1972)
Q Consensus 752 ~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~ 831 (1972)
..++-+ +-+.+... +.+.--.+|.+|...+..+-...|..-..
T Consensus 513 ~~~~~~-~~~l~~~~-l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~----------------------------------- 555 (759)
T KOG0211|consen 513 EFFDEK-LAELLRTW-LPDHVYSIREAAARNLPALVETFGSEWAR----------------------------------- 555 (759)
T ss_pred HHhhHH-HHHHHHhh-hhhhHHHHHHHHHHHhHHHHHHhCcchhH-----------------------------------
Confidence 444432 55666665 77778899999999998887777721100
Q ss_pred cccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHH
Q 000167 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNL 911 (1972)
Q Consensus 832 ~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V 911 (1972)
..+.+.++....+.+|..|..-+..+..++.-.+..+.. .+|+..+.....|...+|
T Consensus 556 --------------------~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~---~~Llp~~~~l~~D~vanV 612 (759)
T KOG0211|consen 556 --------------------LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITC---EDLLPVFLDLVKDPVANV 612 (759)
T ss_pred --------------------HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHH---HHHhHHHHHhccCCchhh
Confidence 013345666667779999999999998776543333333 678888888899999999
Q ss_pred HHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000167 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (1972)
Q Consensus 912 ~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~ 967 (1972)
+..+++.+..+.+.+-.... -+.+.|.+.....|+...||-.|..+...+....
T Consensus 613 R~nvak~L~~i~~~L~~~~~--~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 613 RINVAKHLPKILKLLDESVR--DEEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred hhhHHHHHHHHHhhcchHHH--HHHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 99999999999888865432 2456666666667999999999999998887653
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-05 Score=94.88 Aligned_cols=147 Identities=12% Similarity=0.061 Sum_probs=106.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (1972)
..+...+.|++|.+|..++..|..+ . . .+.+..|...|+|.+..|+..|+..|+.+. ....
T Consensus 131 ~~l~~~~~D~~~~VR~~a~~aLg~~--------~--~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~--------~~~~ 191 (280)
T PRK09687 131 EQSQITAFDKSTNVRFAVAFALSVI--------N--D-EAAIPLLINLLKDPNGDVRNWAAFALNSNK--------YDNP 191 (280)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHhcc--------C--C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------CCCH
Confidence 3455667888999999988888533 1 1 567888888889999999998888887761 1134
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHH
Q 000167 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (1972)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (1972)
..++.++..|.|.+..||..|..+|.. ++-...+|.|...|++. + +|..++.-|.+ ++. ...++
T Consensus 192 ~~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~~--~--~~~~a~~ALg~----ig~----~~a~p 255 (280)
T PRK09687 192 DIREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKKG--T--VGDLIIEAAGE----LGD----KTLLP 255 (280)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcCC--c--hHHHHHHHHHh----cCC----HhHHH
Confidence 677888889999999999998888866 35567888899998864 2 46665555543 221 23455
Q ss_pred HHHhhcC-CCCHHHHHHHHHHHH
Q 000167 1016 PASIAMT-DKSSDVRKAAEACIV 1037 (1972)
Q Consensus 1016 pl~~~L~-D~~~dVR~aA~~~l~ 1037 (1972)
.+...+. +.+..||..|.+++.
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHh
Confidence 5677774 778899988887764
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-06 Score=100.22 Aligned_cols=180 Identities=18% Similarity=0.259 Sum_probs=145.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (1972)
..+..+++++|....+++..+..+..- ++......+.+++-++.+-+++.++.|...||.+++.|++.++..+.+.+..
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~f-h~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSEF-HPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999988763 3444444568888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC----Chhh
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP----DAAH 1012 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~----~~~~ 1012 (1972)
++..++.+-.+.|.+||+.|..+|.+|+.+.....+++.|..++++. ++..|.....-...++...+..+ ...+
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~--n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHS--NPRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh--chhhhhhhhccccccceeccccchhhHhHHH
Confidence 99999999999999999999999999999999999999999999976 57777665544444444443211 1223
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 1013 LLKPASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 1013 ll~pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
++..+-.-+.|+-+++|++|...+...
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~~ 275 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLEL 275 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHhH
Confidence 334455667888888898888665444
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0053 Score=82.53 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHH
Q 000167 383 AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVR 462 (1972)
Q Consensus 383 ~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR 462 (1972)
+++....+..+.. | .....++++++..+.+++..+|+-+..++..+....+.. .-..+..+.+-+.|++|-||
T Consensus 50 k~alKkvIa~mt~-G-~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-----alLaINtl~KDl~d~Np~IR 122 (746)
T PTZ00429 50 KAAVKRIIANMTM-G-RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-----ALLAVNTFLQDTTNSSPVVR 122 (746)
T ss_pred HHHHHHHHHHHHC-C-CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-----HHHHHHHHHHHcCCCCHHHH
Confidence 4444444444433 2 566789999999999999999999988888765543321 23457888999999999999
Q ss_pred HHHHHHHHH
Q 000167 463 DAAFSVLAA 471 (1972)
Q Consensus 463 ~aA~~~l~~ 471 (1972)
.-|.++|+.
T Consensus 123 aLALRtLs~ 131 (746)
T PTZ00429 123 ALAVRTMMC 131 (746)
T ss_pred HHHHHHHHc
Confidence 999988754
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00054 Score=91.74 Aligned_cols=144 Identities=13% Similarity=0.047 Sum_probs=94.3
Q ss_pred hhcCCChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh
Q 000167 10 EAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (1972)
Q Consensus 10 ~~~~lpl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~ 89 (1972)
|+--.|+..-+.|++=-.|..|.--+.+.|+..++- - .-..+.+.+.+++.|+|+.|+-.|+.+|....+..+... .
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel-v-~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~ 215 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL-F-YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-E 215 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc-c-cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-H
Confidence 555567788899999999999999999999753321 0 112345667788999999999999999988876543211 1
Q ss_pred hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh--hhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 000167 90 YAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL--EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQAL 156 (1972)
Q Consensus 90 ~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~--~~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l 156 (1972)
.....+..|+...-...+-.+-..++++..|.-- +....+++.+.+.+.|.|+=|+.+|+.++..+.
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 1223334444432111233333444544433211 123467888889999999999999999887654
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.076 Score=71.77 Aligned_cols=191 Identities=12% Similarity=0.144 Sum_probs=139.4
Q ss_pred CHHHHHHHHHHHHHHHHHc-cccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHH
Q 000167 866 DWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1972)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a-~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~ 944 (1972)
+-++++.+.+-|..++... ..........++++.|.+-+.++-.-+...+|.|+..|....+..+..++...+|-++-.
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~ 746 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS 746 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 6778888888888887530 011112224678888888888888889999999999999999988889999999988888
Q ss_pred hCCCcHHHHHHHHHHHHHHHH--hc---C-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCC
Q 000167 945 LGDNKKHMRECTLTVLDAWLA--AV---H-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPD 1009 (1972)
Q Consensus 945 L~D~k~~Vr~Aa~~aL~~i~~--~~---~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~~~ 1009 (1972)
+++.+..-|+.+.+||..|.. .. | +..+++.|..++.++ ....+...+-.+...+.+... ..-
T Consensus 747 ~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd--~~~~~as~Ivai~~il~e~~~~ld~~~ 824 (1176)
T KOG1248|consen 747 LKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD--STRVVASDIVAITHILQEFKNILDDET 824 (1176)
T ss_pred cccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 899999999999999999883 21 2 344666666666544 233444423333333333332 223
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000167 1010 AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (1972)
Q Consensus 1010 ~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~ 1058 (1972)
+..++.-+..+|...+++||++|...+..++..+++.-+.+++..|=|.
T Consensus 825 l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 825 LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 4556666888999999999999999999999999998777776555443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.4e-05 Score=89.24 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=115.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 941 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~l 941 (1972)
+.|++|.+|..|+..|..+... ...+ ...++..|...+.|.+..|+..++..|+.+. -...++.+
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~~---~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L 164 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCKK---NPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLL 164 (280)
T ss_pred hcCCCHHHHHHHHHHHhccccc---cccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHH
Confidence 5889999999999999877432 1111 2456777888889999999999888876542 13578999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc
Q 000167 942 LKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (1972)
Q Consensus 942 l~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (1972)
+..|.|....||..|..+|..+ ..+-...++.|...|.+. ++.+|.+++..|.+. .....+.+|+..|
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~--------~~~~av~~Li~~L 232 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALR--------KDKRVLSVLIKEL 232 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHcc--------CChhHHHHHHHHH
Confidence 9999999999999999999988 333456788899999876 789999999998752 1135677799999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 000167 1022 TDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 1022 ~D~~~dVR~aA~~~l~~l 1039 (1972)
+|.+ ||..|..+++.+
T Consensus 233 ~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 233 KKGT--VGDLIIEAAGEL 248 (280)
T ss_pred cCCc--hHHHHHHHHHhc
Confidence 9865 788777777665
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.21 Score=66.96 Aligned_cols=496 Identities=14% Similarity=0.111 Sum_probs=263.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhc---CCC
Q 000167 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAG---CLN 400 (1972)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~al~~~~---~~~ 400 (1972)
.++..|...++|....|+..|++-++.++..+... .+..++..+++.|..-. ......+.-+|..+...| ...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 34555666677999999999999999999988843 46677778888665443 344455555555555442 234
Q ss_pred hHhHHHHHHHHhh-------c-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH-HHHhcCCChHHHHHHHHHHHH
Q 000167 401 LVDVVEDVKTSVK-------N-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAA 471 (1972)
Q Consensus 401 l~~il~~l~~~l~-------~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l-~k~l~Ds~~~VR~aA~~~l~~ 471 (1972)
+++|+|.|..++. + .--.||-.++=++-.+.....+..+.+++..+.+.| ..++-|..-++|.||..||-.
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 6688888887773 2 335788888777766666666776767777666655 577899999999999988876
Q ss_pred HHHHhCchhH-HHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCC
Q 000167 472 IAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550 (1972)
Q Consensus 472 l~~~~ge~~~-~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~ 550 (1972)
.....|+-+. .+++...|-..-....-|...
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~------------------------------------------------ 529 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLD------------------------------------------------ 529 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHH------------------------------------------------
Confidence 5555554310 112222221100000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHH
Q 000167 551 APASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 630 (1972)
Q Consensus 551 ~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~ 630 (1972)
+ ..+-.+.+.-...++.+.+..++.|=+-+.|..|...|.++..
T Consensus 530 ---------------------------------l---~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 530 ---------------------------------L---CVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred ---------------------------------H---hHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 0 0011122222233445555666888788889999998887543
Q ss_pred h-ccccchhHHHHHHHHh----cCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHH---HHHHHHhhhcchhhhHHH
Q 000167 631 A-VQNLDQSVEILVRLVC----MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL---CLLGISERVADIKTRAHA 702 (1972)
Q Consensus 631 ~-~~~~~~~~~~lv~~L~----~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~---il~~LveKlgd~K~r~~a 702 (1972)
. +.... -..+++++. ..+.+...-+.+....+..+..+......+...-+.. +++.+.++-.....++.-
T Consensus 574 ~~pk~~a--~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lm 651 (1133)
T KOG1943|consen 574 TEPKYLA--DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLM 651 (1133)
T ss_pred hhHHhhc--ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHH
Confidence 3 11110 112333332 1111112222222222222221111111122222222 456666665554433444
Q ss_pred HHHHHHHHhhcC-------hhHHHHHHHHhh---hhCCChHHHHHHHHHHHHHHHHhCCCC-CChhhHHHHHHhcCCCCC
Q 000167 703 MKCLTTFSEAVG-------PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSS 771 (1972)
Q Consensus 703 ~~~L~~l~e~~~-------~~~vl~~l~~~l---~~~KnpKv~~e~l~~L~~~i~~fG~~~-l~~k~li~~l~~~gL~~s 771 (1972)
..+...+.|.++ ++++.+..-..+ ..+.| .+|.++...+++++..|-... -...++|......+-..+
T Consensus 652 r~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~ 730 (1133)
T KOG1943|consen 652 RQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCS 730 (1133)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCch
Confidence 445555555443 234444322222 12334 677888888888888764321 111134443333213444
Q ss_pred chhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCccccc
Q 000167 772 AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDIS 851 (1972)
Q Consensus 772 n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs 851 (1972)
+-.+|..-+..++.+-..+ +.. ..++-+ .+
T Consensus 731 ~~~~r~g~~lal~~lp~~~---i~~-------~~q~~l----c~------------------------------------ 760 (1133)
T KOG1943|consen 731 EERIRRGLILALGVLPSEL---IHR-------HLQEKL----CK------------------------------------ 760 (1133)
T ss_pred HHHHHHHHHHHHccCcHHh---hch-------HHHHHH----HH------------------------------------
Confidence 6666765555444432111 111 011111 11
Q ss_pred ccccHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHccccCCCCChhhHHHHHHh----ccc----cchHHHHHHHHHHHHH
Q 000167 852 GKFTPTLVKSL-ESPDWKV-RLESIEAVNKILEEANKRIQPAGTGELFGGLRG----RLY----DSNKNLVMATLITLGA 921 (1972)
Q Consensus 852 ~~l~~~ll~~l-~d~~Wk~-R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~----~L~----DsN~~V~~~Al~~l~~ 921 (1972)
.++... +|. |.+ |...+..+..++..-.....+..+.+++..|.+ ... |...-|+..|+..+..
T Consensus 761 -----~~l~~~p~d~-~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~ 834 (1133)
T KOG1943|consen 761 -----LVLELLPSDA-WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSS 834 (1133)
T ss_pred -----HHhccCcccc-cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHh
Confidence 111111 111 333 666666666666532112233334455544444 444 4445578899998888
Q ss_pred HHHHcC--hhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000167 922 VASAMG--PAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1972)
Q Consensus 922 La~alg--~~~~~~-~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~ 966 (1972)
+...+. +-++.+ +..++..+++..-|+-...|+.|..|+..++.+
T Consensus 835 ~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 835 LLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred hhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 876553 335544 455666688888888888899999999998877
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0059 Score=74.50 Aligned_cols=190 Identities=17% Similarity=0.119 Sum_probs=138.8
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCC---CCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh--hchhhh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~---ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~--~~f~~~ 363 (1972)
++.+.+.+++=+.|.++|+.|..++... .+....+.+|+..+.+.++-....=...|+++++.++-.+| ..-+..
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 5667778899999999999998876422 22235578899999999984444667789999999999887 555566
Q ss_pred hhhHHHHHHHHhccCc--HHHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHh--h-c---------CChHHHHHH
Q 000167 364 SRFLLPVLLEKLKEKK--PTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSV--K-N---------KVPLVRSLT 423 (1972)
Q Consensus 364 ~~~llp~LL~klkdkk--~~V~~aa~~aL~al~~~~~~~l~------~il~~l~~~l--~-~---------Knp~vR~~~ 423 (1972)
...+.|.|..-+.|.. ..+|.++..||-.+.-.++...+ +.++.|+... + + .++.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 7778888888777764 34566666666654333233333 2344333211 1 1 236788888
Q ss_pred HHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 424 l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
+.--..++...+...+...+...+|.|..+|+..+.+||-+|-++++.++....+
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8777888888777667777888999999999999999999999999999988774
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.24 Score=64.28 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChH
Q 000167 381 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (1972)
Q Consensus 381 ~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 460 (1972)
-.++|..-.+.-| .+ ......++|++......||+.||.-+--+|-+..+..+.-.+. =+..+.+.|.|+|+.
T Consensus 51 ~KleAmKRIia~i-A~-G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-----SIntfQk~L~DpN~L 123 (968)
T KOG1060|consen 51 LKLEAMKRIIALI-AK-GKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-----SINTFQKALKDPNQL 123 (968)
T ss_pred HHHHHHHHHHHHH-hc-CCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-----eHHHHHhhhcCCcHH
Confidence 3455554444444 44 2568899999999999999999999999999988765532221 145688999999999
Q ss_pred HHHHHHHHHHHH
Q 000167 461 VRDAAFSVLAAI 472 (1972)
Q Consensus 461 VR~aA~~~l~~l 472 (1972)
+|.-|..+|..+
T Consensus 124 iRasALRvlSsI 135 (968)
T KOG1060|consen 124 IRASALRVLSSI 135 (968)
T ss_pred HHHHHHHHHHhc
Confidence 999999988644
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.42 Score=62.78 Aligned_cols=396 Identities=15% Similarity=0.169 Sum_probs=230.6
Q ss_pred HHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcc
Q 000167 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 801 (1972)
Q Consensus 722 l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~l 801 (1972)
++..+ ...+......++..|..++..+....+ ...+.+++.. ||.|+++.||.-+.+.++.+-...+..+
T Consensus 43 lf~~L-~~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~------- 112 (503)
T PF10508_consen 43 LFDCL-NTSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAA------- 112 (503)
T ss_pred HHHHH-hhcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHH-------
Confidence 44443 344666677788888888876654333 4567777877 4999999999998887554432211000
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000167 802 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL 881 (1972)
Q Consensus 802 kp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll 881 (1972)
+- +...+ +-+.++..+.+.+-.+.+.|+..|..+.
T Consensus 113 ------------~~-----------------------------~~~~~----l~~~i~~~L~~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 113 ------------QL-----------------------------LVDNE----LLPLIIQCLRDPDLSVAKAAIKALKKLA 147 (503)
T ss_pred ------------HH-----------------------------hcCcc----HHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 00 00001 3345777889999999999999999887
Q ss_pred HHccccCCCCCh-hhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh--HHHHHHHHhCCCcHHHHHHHHH
Q 000167 882 EEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLT 958 (1972)
Q Consensus 882 ~~a~~~I~~~~~-~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~~L~D~k~~Vr~Aa~~ 958 (1972)
... ..+. ..| .++...|...+...|..++...+.++..++..- .....++.. +++.++..+.+....|+-.+.+
T Consensus 148 ~~~-~~~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 148 SHP-EGLE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred CCc-hhHH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 521 1110 011 233677777777667778887888877776443 333344443 9999999999988899999999
Q ss_pred HHHHHHHhcC-c-----hhhHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhccCCC--CCC----hhhhHHHHHhhcCCCC
Q 000167 959 VLDAWLAAVH-L-----DKMVPYVTTALTDAKLGA-EGRKDLFDWLSKQLTGLSG--FPD----AAHLLKPASIAMTDKS 1025 (1972)
Q Consensus 959 aL~~i~~~~~-l-----~~ll~~l~~~L~~~~~~~-~~R~~~l~~L~~~l~~~~~--~~~----~~~ll~pl~~~L~D~~ 1025 (1972)
.+..++..-. . ..+++.|...+.+...+| -...-+.+.+ .++..... ... ...++..+..+++..+
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~-~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM-KFFGNLARVSPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999988432 1 236667777776544455 2222222222 22222211 111 2233344666778899
Q ss_pred HHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000167 1026 SDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 1104 (1972)
Q Consensus 1026 ~dVR~aA~~~l~~l~~~~-G~~~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1104 (1972)
...+..|..+++.+.... |...+ ..+-.+.-+..+..+.+..+.. +
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L---~~~~~~~~~~~l~~~~~~~~~~-----~------------------------- 350 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLL---LQKQGPAMKHVLKAIGDAIKSG-----S------------------------- 350 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHH---HhhcchHHHHHHHHHHHHhcCC-----c-------------------------
Confidence 999999999999886443 33222 1112222222222222111100 0
Q ss_pred CCCCCCCCCCCCcccccchhhhhhhhccccCCCChHHhhh-hhccc-c--cccCCChhhHHHHHHHHHHhhhH---H-HH
Q 000167 1105 SRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVRR-F--KFEDPRIEQIQELENDMMKYFRE---D-LH 1176 (1972)
Q Consensus 1105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~-~~~~k-~--~f~~~~~e~ve~L~~q~~~~~~~---~-l~ 1176 (1972)
-+-|.+ +..+. + ...+...+++-.+...+...++. . ++
T Consensus 351 ----------------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l 396 (503)
T PF10508_consen 351 ----------------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLL 396 (503)
T ss_pred ----------------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHH
Confidence 000000 00000 0 00111223332333333333222 1 44
Q ss_pred HhhcCccHHH-HHHHHHHHHHhcCcch-hhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHH
Q 000167 1177 RRLLSTDFKK-QVDGLEMLQKALPSIR-KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (1972)
Q Consensus 1177 ~~lf~~d~k~-~~~al~~L~~~l~~~~-~~~i~~lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~ 1243 (1972)
-.+...+|-+ |++|+..|...+...- ...+.+.--++.|++-|-.|++..+...-.+++..+.....
T Consensus 397 ~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 397 MSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 4455678765 8999999988876642 22344455689999999999999999999999998765444
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.1 Score=67.38 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=105.4
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000167 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (1972)
Q Consensus 321 ~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~ 400 (1972)
++...|++.|+..|++....++..|+++||..|...+ .....++.+|+..++.....|..++...++.++......
T Consensus 388 sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~ 463 (968)
T KOG1060|consen 388 SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE 463 (968)
T ss_pred ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH
Confidence 4567788888888986666799999999999998776 356689999999999999999999999999998862111
Q ss_pred hHhHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 401 LVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 401 l~~il~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
-..++..+...+++ +.|.-|..++..+....+. ..+..+.++..+.+...|-.++||-.....-..+.
T Consensus 464 h~~ii~~La~lldti~vp~ARA~IiWLige~~e~-----vpri~PDVLR~laksFs~E~~evKlQILnL~aKLy 532 (968)
T KOG1060|consen 464 HLEILFQLARLLDTILVPAARAGIIWLIGEYCEI-----VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLY 532 (968)
T ss_pred HHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhh-----cchhchHHHHHHHHhhccccchhhHHHHHhhhhhe
Confidence 22466666666764 5677776666555544433 33455777778888888888888877666554443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.018 Score=76.92 Aligned_cols=301 Identities=15% Similarity=0.212 Sum_probs=193.3
Q ss_pred HHHHHhhhc-CChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchh--
Q 000167 604 ADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK-- 680 (1972)
Q Consensus 604 ~~l~~~L~s-~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~-- 680 (1972)
.-+..++++ +.-..|++|++.|...-.-.+. +.-.+-++.++.. .|.|+-.+|+..++++|..++..-.++.+.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d-e~~LDRVlPY~v~--l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD-EVKLDRVLPYFVH--LLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch-HHHHhhhHHHHHH--HhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 334444444 3456788999888765443322 1234556666643 578999999999999999988765555432
Q ss_pred --hHHHHHHHHHhhhcch---hhhHHHHHHHHHHHhhcChhHHHHHHHH--hhhhCCChH----HHH-HHHHHHHHHHHH
Q 000167 681 --CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYK--IMKDHKNPK----VLS-EGILWMVSAVED 748 (1972)
Q Consensus 681 --~~~~il~~LveKlgd~---K~r~~a~~~L~~l~e~~~~~~vl~~l~~--~l~~~KnpK----v~~-e~l~~L~~~i~~ 748 (1972)
....++|.|-.-+.|. .+|-.-..+|-.++....-=..+.+... ++.+..|.. ... .-+..|.
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~----- 576 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH----- 576 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-----
Confidence 2345667776666662 3565555566655543110000111111 111111110 000 0011111
Q ss_pred hCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000167 749 FGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (1972)
Q Consensus 749 fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~ 828 (1972)
..+-+.+..+ +.++.+.||.+-.+-++.|+.++|.. +
T Consensus 577 --------~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk~-----------------------k----------- 613 (1431)
T KOG1240|consen 577 --------HTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGKE-----------------------K----------- 613 (1431)
T ss_pred --------HHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhhc-----------------------c-----------
Confidence 1233345566 78888999999999999999888721 0
Q ss_pred ccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhh-HHHHHHhccccc
Q 000167 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDS 907 (1972)
Q Consensus 829 r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~e-L~~~L~~~L~Ds 907 (1972)
+ . |+ |.+-++.-+.|++|.-|-.-.+.+-.+. -.+......| +++.|.+.|.|.
T Consensus 614 -s-----------N------D~---iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 614 -S-----------N------DV---ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred -c-----------c------cc---hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCc
Confidence 0 1 12 5567888899999999999888877653 3444442244 567778889999
Q ss_pred hHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----chhhHHHHHHHHh
Q 000167 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LDKMVPYVTTALT 981 (1972)
Q Consensus 908 N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~----l~~ll~~l~~~L~ 981 (1972)
..-|+..||.++..|++. |--=++++..++..++-.|...+..||.++...+-++.+.++ .-.+.|.|-+.|.
T Consensus 669 EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred chhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 999999999999998863 222356788888888889999999999999999999999886 2346677766666
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.41 Score=62.88 Aligned_cols=187 Identities=20% Similarity=0.270 Sum_probs=112.0
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCC----CCC-CChHHHHHHHHHHhccc--CHHHHHHHHHHHHHHHHHhhhchhhh
Q 000167 291 WEGVKATKWSERKDAVAELTKLASTKR----IAP-GDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLRTHFSGS 363 (1972)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~~k----i~~-~~y~~l~~~L~k~l~D~--N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (1972)
...+.+.+--.|..+++.|..++..+. +.. +-+..|+..|...-.|. +....-..++..+.++..-...+-..
T Consensus 208 l~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~ 287 (503)
T PF10508_consen 208 LKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL 287 (503)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH
Confidence 334555666667888888888775321 111 22333333333333344 44444455577777776522333333
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cC--------CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000167 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GC--------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (1972)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~~--------~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~ 433 (1972)
.+.++..++..+....+..+..|.+++..+... |. ..+..++..+.....+....+|..+++.++.++..
T Consensus 288 ~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 288 YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 455666666666778888899888888877643 10 01223344444445566678999999999998765
Q ss_pred cCh---hHHHHhh---------hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-hC
Q 000167 434 SSK---AAVLKVH---------KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS-VG 477 (1972)
Q Consensus 434 ~~~---~~l~~~l---------~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~-~g 477 (1972)
... ..+.... +.....+...+.-+.|++|-+|...+..++.+ +|
T Consensus 368 ~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 368 GTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 432 1111111 11112788889999999999999999988855 44
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.12 E-value=1.9 Score=56.71 Aligned_cols=124 Identities=17% Similarity=0.140 Sum_probs=91.0
Q ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHH-HhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHH
Q 000167 347 QAIGNLARGLRTHFSGSSRFLLPVLLE-KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLN 425 (1972)
Q Consensus 347 ~~l~~La~~L~~~f~~~~~~llp~LL~-klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~ 425 (1972)
+=+|+||-.|-=+=.+-+-.++...++ -+...++.|+-.|-.++..++.- --..++.|++..-++|.+|.+|.-++.
T Consensus 87 KRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~--EmardlapeVe~Ll~~~~~~irKKA~L 164 (866)
T KOG1062|consen 87 KRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP--EMARDLAPEVERLLQHRDPYIRKKAAL 164 (866)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH--HHhHHhhHHHHHHHhCCCHHHHHHHHH
Confidence 346677665533323334444444444 47888888887777777766542 335688999999999999999999998
Q ss_pred HHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhC
Q 000167 426 WVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 426 ~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~g 477 (1972)
...+++.+.+. ....+++...+.|.|.+..|=-++...+..+++.-.
T Consensus 165 ca~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 165 CAVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred HHHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 88898876543 247788999999999999998888888877777544
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0037 Score=62.52 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCC
Q 000167 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKL 985 (1972)
Q Consensus 912 ~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~ 985 (1972)
+..++..+..++.++|..+.+|++.++|+++.++.|+...||-+|.++|..+++..+ ...+++.+...+.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~-- 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP-- 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence 456788899999999999999999999999999999999999999999999998876 233344444444444
Q ss_pred ChhHHHHH
Q 000167 986 GAEGRKDL 993 (1972)
Q Consensus 986 ~~~~R~~~ 993 (1972)
++.+|..+
T Consensus 81 d~~Vr~~a 88 (97)
T PF12755_consen 81 DENVRSAA 88 (97)
T ss_pred chhHHHHH
Confidence 46667554
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.068 Score=67.80 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=127.1
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~k---i~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~ 364 (1972)
....++.+.+=..+..+...++++.+..+ +...--..+++.|...+. +.+..+..+|+-++..+|.|-...-.-++
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 34556677788889999999999885433 322222356777777887 88899999999999999998765444333
Q ss_pred h-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh------HHHHHHHHhhcCCh-HHHHHHHHHHHHHHHhcCh
Q 000167 365 R-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKVP-LVRSLTLNWVTFCIETSSK 436 (1972)
Q Consensus 365 ~-~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~------il~~l~~~l~~Knp-~vR~~~l~~L~~~l~~~~~ 436 (1972)
. ..+|.++..+......|++.+.-||..+... +..+.+ +++.++..+....+ ...+.+...|..+.....+
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 2 5688889999999999999999999998876 333333 45666666665554 3333444444444443323
Q ss_pred hHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 437 ~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
+.-...+..++|+|..++.+.|++|..-|+-++.-+
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222245688999999999999999985555444433
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0024 Score=63.83 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCc
Q 000167 301 ERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1972)
Q Consensus 301 eR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (1972)
.|+.+|-.|.+++- -++-....+..|++.+.+.++|.+..|+..||+++..+++..+..+-+|...++..|.+.+.|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 58999999988653 22222234578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000167 380 PTVAESLTQTLQAMH 394 (1972)
Q Consensus 380 ~~V~~aa~~aL~al~ 394 (1972)
+.|+.++ +.|+.++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999988 5565554
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.02 Score=72.36 Aligned_cols=267 Identities=14% Similarity=0.186 Sum_probs=169.9
Q ss_pred HHHHHHHhhhhCCChHHHHHHHHHHHHHHHH---hCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhH
Q 000167 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVED---FGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794 (1972)
Q Consensus 718 vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~---fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l 794 (1972)
+++.+...+..+.+|+++.++...|.++... .....++-. -++.+..+ +.+++..||+-|...|+-+... |+.+
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~ag-avp~fi~L-l~s~~~~v~eQavWALgNIagd-s~~~ 186 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAG-AVPIFIQL-LSSPSADVREQAVWALGNIAGD-SPDC 186 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCC-chHHHHHH-hcCCcHHHHHHHHHHHhccccC-ChHH
Confidence 4556666665677899999999999988762 111122222 23334456 8999999999999888766421 2334
Q ss_pred HhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCC-HHHHHHH
Q 000167 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPD-WKVRLES 873 (1972)
Q Consensus 795 ~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~-Wk~R~ea 873 (1972)
++|.=+ .. +.+.|+..+...+ -.....+
T Consensus 187 Rd~vl~--~g-------------------------------------------------~l~pLl~~l~~~~~~~~lRn~ 215 (514)
T KOG0166|consen 187 RDYVLS--CG-------------------------------------------------ALDPLLRLLNKSDKLSMLRNA 215 (514)
T ss_pred HHHHHh--hc-------------------------------------------------chHHHHHHhccccchHHHHHH
Confidence 444300 00 1112333332222 2455566
Q ss_pred HHHHHHHHHHccccCCCC--ChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh-hHHHHHHHHhCCCcH
Q 000167 874 IEAVNKILEEANKRIQPA--GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK-GVLSDILKCLGDNKK 950 (1972)
Q Consensus 874 le~l~~ll~~a~~~I~~~--~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~-~llp~ll~~L~D~k~ 950 (1972)
.-.|..++.+.+ =.|. ...+++++|...+...+..|...||-+|..|+..-.....-.+. .++|.++..|+..+.
T Consensus 216 tW~LsNlcrgk~--P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 216 TWTLSNLCRGKN--PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP 293 (514)
T ss_pred HHHHHHHHcCCC--CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc
Confidence 777888887532 1222 24678889999998888899999999999987654444333333 488999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CCh-hhhHHHHHhh
Q 000167 951 HMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDA-AHLLKPASIA 1020 (1972)
Q Consensus 951 ~Vr~Aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~-~~ll~pl~~~ 1020 (1972)
.|+..|..++..++.... -...+|.+...|.... ....|.+++=.+...-...... .-+ ..++++|+.+
T Consensus 294 ~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~-~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~ 372 (514)
T KOG0166|consen 294 KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP-KESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINL 372 (514)
T ss_pred ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc-chhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHH
Confidence 999999998888665443 1346777777776321 2346787775555433222110 111 2455669999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 000167 1021 MTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1021 L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
|....-++|+.|.-++.-+..
T Consensus 373 l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 373 LQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HhccchHHHHHHHHHHHhhcc
Confidence 999899999999887765543
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=3.3 Score=56.28 Aligned_cols=371 Identities=17% Similarity=0.130 Sum_probs=194.3
Q ss_pred hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC-C
Q 000167 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-F 1007 (1972)
Q Consensus 932 ~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~-~ 1007 (1972)
.+++.++-.++..+.|+...||=+|...+..+..+.+ .+.++..+.+.+.-.. .+..=.+++-.|++.-. -+- .
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e-~~~aWHgacLaLAELA~-rGlLl 414 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAE-DDSAWHGACLALAELAL-RGLLL 414 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCC-chhHHHHHHHHHHHHHh-cCCcc
Confidence 5778899999999999999999999999999999988 3455565555332110 11122355656655322 111 2
Q ss_pred CChhhhHHH-HHhhc--CC------CCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc----cCCC
Q 000167 1008 PDAAHLLKP-ASIAM--TD------KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN----GASQ 1074 (1972)
Q Consensus 1008 ~~~~~ll~p-l~~~L--~D------~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~----~~~~ 1074 (1972)
+...+.+.| |.+.| ++ ....||.+|...+++|.+......|.+++..|-++-. +.+..|+. |++.
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL--~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALL--IVALFDREVNCRRAAS 492 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHH--HHHhcCchhhHhHHHH
Confidence 334445555 55554 22 3457999999999999999999888887766654422 22222221 1000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcccccchhhh-hhhhccccCCCChHHhhhhhccccccc
Q 000167 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAV-QSQALLNVKDSNKEDRERMVVRRFKFE 1153 (1972)
Q Consensus 1075 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~R~~~~~~k~~f~ 1153 (1972)
+ +--.-+++.+ ..|- +.+- .+.-.+.+.+-.+--+ .+.
T Consensus 493 ---------A-----AlqE~VGR~~-------------n~p~------Gi~Lis~~dy~sV~~rsNcy~----~l~---- 531 (1133)
T KOG1943|consen 493 ---------A-----ALQENVGRQG-------------NFPH------GISLISTIDYFSVTNRSNCYL----DLC---- 531 (1133)
T ss_pred ---------H-----HHHHHhccCC-------------CCCC------chhhhhhcchhhhhhhhhHHH----HHh----
Confidence 0 0000011111 0100 0000 0000011111000000 000
Q ss_pred CCChhhHHHHHHHHHHhhhHHHHHhhcCccHHHHHHHHHHHHHhcCcchhhHH-HHHHHHHHHHHHhhcCcchHHHHHHH
Q 000167 1154 DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-EVLDILLRWFVLQFCKSNTTCLLKVL 1232 (1972)
Q Consensus 1154 ~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~~~al~~L~~~l~~~~~~~i-~~lDlllk~~~lr~~dtN~~vl~k~L 1232 (1972)
..+.+...-...+|..-+...++|=|-+-|-.+-..|.+.-...++... -++--+++++...=.+.-..+...+=
T Consensus 532 ----~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ 607 (1133)
T KOG1943|consen 532 ----VSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAG 607 (1133)
T ss_pred ----HHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHH
Confidence 1112222223456777788889998888887777777764333333333 13333444421100001111222222
Q ss_pred hhHHHHHHHHHhcC--C-CCCHHHHHh---hhhHHHHhhCCCh--HHHHHHHHHHHHHHhhcCCc-------cccHHHHH
Q 000167 1233 EFLPELFDTLRDEG--Y-SLTESEAAV---FLPCLVEKSGHNI--EKVREKMRELTKQIVNFYSA-------TKTLPYIL 1297 (1972)
Q Consensus 1233 d~l~~l~~~l~~~~--y-~l~~~Ea~~---~lp~L~~K~Gd~k--~~vr~~v~~il~~~~~v~~~-------skvf~~l~ 1297 (1972)
++ +..+.... + .+.+.+... ++|.+..+-=+.+ +.+|..+-..++++...-+. ++....|.
T Consensus 608 ev----~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~ 683 (1133)
T KOG1943|consen 608 EV----IGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLA 683 (1133)
T ss_pred HH----HHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 22 22233332 2 255666666 4888877764433 77888777777777654332 22333444
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchH--HHHHhhhcCCchHHHHHHHHHHH
Q 000167 1298 EGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL--QIVASLTAERDGEIRKAALNTLA 1356 (1972)
Q Consensus 1298 ~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~k~l--~~ia~~i~drd~~VR~aAl~~l~ 1356 (1972)
+.+...| -.|.+....++.++..|-+...+..-.+ ..|+.+.+..+..+|..-.-+++
T Consensus 684 ~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~ 743 (1133)
T KOG1943|consen 684 QNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALG 743 (1133)
T ss_pred HhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHc
Confidence 5565555 7799999999999999976542222222 55555555555555554444443
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.18 Score=64.15 Aligned_cols=264 Identities=17% Similarity=0.204 Sum_probs=149.3
Q ss_pred hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhh-ChhH
Q 000167 716 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFV-GPDI 794 (1972)
Q Consensus 716 ~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~-G~~l 794 (1972)
+.++..+... .....++||..+++.|-.+-+ |++ +. +..-....+. +.|.+..||.+|++++...-... ++.
T Consensus 197 ~~~~~~l~~~-~~~~D~~Vrt~A~eglL~L~e--g~k-L~-~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~- 269 (823)
T KOG2259|consen 197 EHAARGLIYL-EHDQDFRVRTHAVEGLLALSE--GFK-LS-KACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPL- 269 (823)
T ss_pred HHHHHHHHHH-hcCCCcchHHHHHHHHHhhcc--ccc-cc-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCcc-
Confidence 3444444444 467889999999988877766 332 11 3455666777 89999999999999887765444 221
Q ss_pred Hhhhhc--ccH----------------------------------HHHHHHHHHHhcCCCCCCCCCCCccccccccCCCC
Q 000167 795 KGFLAD--VKP----------------------------------ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 838 (1972)
Q Consensus 795 ~~~L~~--lkp----------------------------------~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~ 838 (1972)
..+-++ ++. .+.++|++..-..--....+-.|+. ...+.+ ..
T Consensus 270 e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk-~l~s~G-ew 347 (823)
T KOG2259|consen 270 ERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPK-ALYSSG-EW 347 (823)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchH-HHHhcC-Cc
Confidence 111100 011 1112222211100000000000000 000000 00
Q ss_pred CCC---CCCCCccc-------c-cccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc
Q 000167 839 SGG---SDGLPRED-------I-SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS 907 (1972)
Q Consensus 839 ~~~---~d~lprvd-------I-s~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~Ds 907 (1972)
+.| .+..|..+ | ..--.+.|+-+++|.=+.+|.+|+..+..+... .|..-..-+..|...++|-
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-----sP~FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-----SPGFAVRALDFLVDMFNDE 422 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHhccH
Confidence 001 11222211 1 112235677888999999999999999998753 1222256778889999999
Q ss_pred hHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCC
Q 000167 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAK 984 (1972)
Q Consensus 908 N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~~ 984 (1972)
-..|+..|+..+..|+..+ ..-+..++.++..|.|....||++....|... +... +..++..+...|. +
T Consensus 423 ~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~~~d~~~i~m~v~~lL~~L~--k 494 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNA-RVSDLECIDMCVAHLLKNLG--K 494 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhh--h
Confidence 9999999999999998764 23356789999999999999999876655431 1011 2223333333333 2
Q ss_pred CChhHHHHHHHHHHHHhc
Q 000167 985 LGAEGRKDLFDWLSKQLT 1002 (1972)
Q Consensus 985 ~~~~~R~~~l~~L~~~l~ 1002 (1972)
-|+-|-+++..+...=+
T Consensus 495 -yPqDrd~i~~cm~~iGq 511 (823)
T KOG2259|consen 495 -YPQDRDEILRCMGRIGQ 511 (823)
T ss_pred -CCCCcHHHHHHHHHHhc
Confidence 25556666666654433
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.078 Score=71.28 Aligned_cols=288 Identities=15% Similarity=0.091 Sum_probs=185.8
Q ss_pred HHHHHHHhhhcchh---hhHHHHHHHHHHHhhcChhHHHHHHHHhh---hhCCChHHHHHHHHHHHHHHHHh---CCC--
Q 000167 684 LCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDF---GVS-- 752 (1972)
Q Consensus 684 ~il~~LveKlgd~K---~r~~a~~~L~~l~e~~~~~~vl~~l~~~l---~~~KnpKv~~e~l~~L~~~i~~f---G~~-- 752 (1972)
.+++.+...+-..| .|-.|.+.|..++...+-+..+.+++++. +.+..++||..++.+|.+++.-. ...
T Consensus 422 l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 422 LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 34444444444433 57788888888888887777777777654 46778999999999999998632 221
Q ss_pred CCChhhHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCC---CCCCCCCCcc
Q 000167 753 HLKLKDLIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF---EGTVVPKKTV 828 (1972)
Q Consensus 753 ~l~~k~li~~l~~~gL~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~---~~~~~p~r~~ 828 (1972)
.+-+.-+++.+..+ +.+ ++..||-+-..++..|.... ..|+ +.-++.... ..+-..+.+
T Consensus 502 niF~eYlfP~L~~l-~~d~~~~~vRiayAsnla~LA~tA----~rFl-----------e~~q~~~~~g~~n~~nset~~- 564 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHL-LNDSSAQIVRIAYASNLAQLAKTA----YRFL-----------ELTQELRQAGMLNDPNSETAP- 564 (1431)
T ss_pred hhhHhhhhhhhHhh-hccCccceehhhHHhhHHHHHHHH----HHHH-----------HHHHHHHhcccccCccccccc-
Confidence 12245677778777 777 66679999999888876432 1222 111111000 000000000
Q ss_pred ccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccch
Q 000167 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN 908 (1972)
Q Consensus 829 r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN 908 (1972)
.+ .......++...+-.-+...+.|..--+|..-|+.|..++.=- .+.+.+ .=|+..|..-|+|..
T Consensus 565 -~~----------~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF-Gk~ksN--D~iLshLiTfLNDkD 630 (1431)
T KOG1240|consen 565 -EQ----------NYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFF-GKEKSN--DVILSHLITFLNDKD 630 (1431)
T ss_pred -cc----------ccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-hhcccc--cchHHHHHHHhcCcc
Confidence 00 0000111122212223445568888888988888888777521 233343 336778888899999
Q ss_pred HHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----chhhHHHHHHHHhcC
Q 000167 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----LDKMVPYVTTALTDA 983 (1972)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-----l~~ll~~l~~~L~~~ 983 (1972)
..++..=...|..++--+|.- ..-+.++|-+.+.|.|..+.|...|..|+..+++.-- +..++..+.+.|-++
T Consensus 631 w~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP 708 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP 708 (1431)
T ss_pred HHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc
Confidence 999887777777666666644 1235688999999999999999999999999998754 344666777778888
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 000167 984 KLGAEGRKDLFDWLSKQLTGLSG 1006 (1972)
Q Consensus 984 ~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1972)
|--+|.+++.++......+..
T Consensus 709 --N~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 709 --NLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred --hHHHHHHHHHHHHHHHhhhhh
Confidence 567999999999877766654
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.5 Score=60.67 Aligned_cols=191 Identities=18% Similarity=0.232 Sum_probs=136.6
Q ss_pred HHHHh-cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHcChhhHhhh
Q 000167 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1972)
Q Consensus 857 ~ll~~-l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L-~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (1972)
.++.. ....++-.|..+++.+..+++ |......+.+++..+...+ ..........++.++..+++++=-.-.+..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvN---K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVN---KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHc---CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 44443 344469999999999998874 4333334567777777766 556667788899999999998744445778
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--------C-----------chhhHHHHHHHHhcCCCChhHHHHHHH
Q 000167 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H-----------LDKMVPYVTTALTDAKLGAEGRKDLFD 995 (1972)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~--------~-----------l~~ll~~l~~~L~~~~~~~~~R~~~l~ 995 (1972)
..++..+++.|.| +.+...+..++..++.-. + ...++|.+.+..++. +...|...+.
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~~~k~~yL~ 345 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--ChhhHHHHHH
Confidence 8899999999999 667788888888777652 1 233556666666544 3346788888
Q ss_pred HHHHHhccCCCC---CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000167 996 WLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1972)
Q Consensus 996 ~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1972)
.|...+.+.|.. +++..+++-++.+|.=.+.+||.++-.++..++..- .+.+.++++.|
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 888888887762 455555555899998888899999999999888766 55666665433
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.48 Score=61.10 Aligned_cols=253 Identities=13% Similarity=0.186 Sum_probs=142.1
Q ss_pred HHHHhCCCccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCC
Q 000167 155 ALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPT 234 (1972)
Q Consensus 155 ~l~~fG~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~ 234 (1972)
-|..|++.-+ .+.+-.-+..+|+|+-+-||..|+.++--+|-.-.+ ++++.+ ..|+ +++..+ -|.
T Consensus 132 GLS~fvTpdL-ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-Alr~~F-prL~-----------EkLeDp-Dp~ 196 (877)
T KOG1059|consen 132 GLSCIVTPDL-ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-ALRPCF-PRLV-----------EKLEDP-DPS 196 (877)
T ss_pred ccccccCchh-hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-hHhhhH-HHHH-----------HhccCC-Cch
Confidence 3456777322 266888888889999999999988888777766655 465543 3321 122211 110
Q ss_pred cchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhh--ccCChHHHHHHHHHHHHH
Q 000167 235 RKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV--KATKWSERKDAVAELTKL 312 (1972)
Q Consensus 235 R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l--~s~kWkeR~eaL~~L~~l 312 (1972)
+-|.+..- -.|- +-. +|-.+ +. |- +.||+.+ .+.||---+ -++.+.+|
T Consensus 197 --V~SAAV~V-ICEL-------------ArK-----nPkny------L~-LA-P~ffkllttSsNNWmLIK-iiKLF~aL 246 (877)
T KOG1059|consen 197 --VVSAAVSV-ICEL-------------ARK-----NPQNY------LQ-LA-PLFYKLLVTSSNNWVLIK-LLKLFAAL 246 (877)
T ss_pred --HHHHHHHH-HHHH-------------Hhh-----CCccc------cc-cc-HHHHHHHhccCCCeehHH-HHHHHhhc
Confidence 11111000 0000 000 11111 11 22 4788877 458995321 22323333
Q ss_pred hc-CCCCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHH--HHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHH
Q 000167 313 AS-TKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNL--ARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQ 388 (1972)
Q Consensus 313 ~~-~~ki~~~~y~~l~~~L~k~l~D-~N~~V~~~A~~~l~~L--a~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~ 388 (1972)
.- .|++- ..|+.-|...|.. .--.+..++++|+-.- ..|+..+ ...+..++.-|=.-+-|+.++..=-+.-
T Consensus 247 tplEPRLg----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~-~asiqLCvqKLr~fiedsDqNLKYlgLl 321 (877)
T KOG1059|consen 247 TPLEPRLG----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH-SASIQLCVQKLRIFIEDSDQNLKYLGLL 321 (877)
T ss_pred cccCchhh----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc-HHHHHHHHHHHhhhhhcCCccHHHHHHH
Confidence 31 33322 2455555555552 2223444444444221 2223333 3345666666666677888888877777
Q ss_pred HHHHHHHhcCCChHhH---HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCh-HHHHH
Q 000167 389 TLQAMHKAGCLNLVDV---VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP-EVRDA 464 (1972)
Q Consensus 389 aL~al~~~~~~~l~~i---l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~-~VR~a 464 (1972)
|+.-+.. +++..| -+.|+.+|.++.+.+|..++..|.-.+.. +.+.+|+..|+.-+.+++. .-|+.
T Consensus 322 am~KI~k---tHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-------kNl~eIVk~LM~~~~~ae~t~yrde 391 (877)
T KOG1059|consen 322 AMSKILK---THPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK-------KNLMEIVKTLMKHVEKAEGTNYRDE 391 (877)
T ss_pred HHHHHhh---hCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHhccchhHHHH
Confidence 7777765 455544 46678999999999999999999877653 3357788888888888877 55554
Q ss_pred HHH
Q 000167 465 AFS 467 (1972)
Q Consensus 465 A~~ 467 (1972)
-.-
T Consensus 392 ll~ 394 (877)
T KOG1059|consen 392 LLT 394 (877)
T ss_pred HHH
Confidence 433
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.1 Score=67.00 Aligned_cols=190 Identities=15% Similarity=0.180 Sum_probs=148.9
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHH
Q 000167 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~-~y~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (1972)
...++..|..+++.+..+++ |...+ .+.+++..+...+ ..........++.++.-+++||=-+-.+....++..++
T Consensus 200 ~~~~~~~~~~~~~~la~LvN--K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVN--KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 45669999999998888876 34333 4667777777777 45666678888999999999986666788999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh-c-----CCC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000167 373 EKLKEKKPTVAESLTQTLQAMHKA-G-----CLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1972)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~al~~~-~-----~~~-----------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~ 435 (1972)
+.+.+ +.+...+..++..++.- . +.+ +..++|.+.++.+..+...|...+..|..++.+.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 55677777888777754 0 011 34567888888887776799999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhcc
Q 000167 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (1972)
Q Consensus 436 ~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld 489 (1972)
++.+...++.++|.+.++|+=.+++||.++.+++..+..--. ..+..++..|-
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~-~~i~~hl~sLI 408 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP-ELISEHLSSLI 408 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHH
Confidence 998889999999999999999999999999999988876653 34555555543
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.65 E-value=1.4 Score=58.04 Aligned_cols=128 Identities=14% Similarity=0.240 Sum_probs=81.4
Q ss_pred hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--ch
Q 000167 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LD 970 (1972)
Q Consensus 893 ~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~ 970 (1972)
..++..-|+..-.+-+...+..|+++++.+|...... ..++..++..+.-+...|.+.+...+..+.+.++ .+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 3566777777777888888899999999888665333 5677778888877777788888888888888876 45
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHH-HHhccCCCCCChhhhHHHHHhhcCCCCHHHHH
Q 000167 971 KMVPYVTTALTDAKLGAEGRKDLFDWLS-KQLTGLSGFPDAAHLLKPASIAMTDKSSDVRK 1030 (1972)
Q Consensus 971 ~ll~~l~~~L~~~~~~~~~R~~~l~~L~-~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~ 1030 (1972)
.+++.+...+.+=. +|+.|.. +.|+. ++.... ++...++.-++..+.|....|+-
T Consensus 423 ~vv~~l~~~~~sl~-epeak~a-miWilg~y~~~i---~~a~elL~~f~en~~dE~~~Vql 478 (734)
T KOG1061|consen 423 SVVAILCENLDSLQ-EPEAKAA-LIWILGEYAERI---ENALELLESFLENFKDETAEVQL 478 (734)
T ss_pred hhhhhhcccccccC-ChHHHHH-HHHHHhhhhhcc---CcHHHHHHHHHhhcccchHHHHH
Confidence 56665555544321 4665554 44543 322222 23344455555566666555543
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.041 Score=61.94 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHh
Q 000167 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (1972)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L 945 (1972)
++.+|..++..+..++..- |+.....++.+..+|.|.+..|+..|+.++..|... ++-+.-..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 4678999999999998642 343456778888999999999999999999998753 44444456778899999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcC-------CCChhHHHHHHHHHHHHhcc
Q 000167 946 GDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDA-------KLGAEGRKDLFDWLSKQLTG 1003 (1972)
Q Consensus 946 ~D~k~~Vr~Aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~-------~~~~~~R~~~l~~L~~~l~~ 1003 (1972)
.|.++.||+.|..++..+...-+ +...++.+...|.+. ..+.+-|..++.++...+.+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998843 455666666666532 22456678888888777763
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.86 Score=59.11 Aligned_cols=306 Identities=13% Similarity=0.200 Sum_probs=168.5
Q ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHH
Q 000167 897 FGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVP 974 (1972)
Q Consensus 897 ~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~ 974 (1972)
.+++++-|...|--|+-.+++.+..|-. ...++.++|.+..+|......||.-|.-|+.++..... +...-+
T Consensus 101 cna~RkDLQHPNEyiRG~TLRFLckLkE------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDape 174 (948)
T KOG1058|consen 101 CNAYRKDLQHPNEYIRGSTLRFLCKLKE------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPE 174 (948)
T ss_pred HHHHhhhccCchHhhcchhhhhhhhcCc------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHH
Confidence 3455666777888888888887765521 24578899999999999999999999999999998732 111111
Q ss_pred HHHHHHhcCCCChhHH------------HHHHHHHHHHhccCCCCCChhhhH-HHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 975 YVTTALTDAKLGAEGR------------KDLFDWLSKQLTGLSGFPDAAHLL-KPASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 975 ~l~~~L~~~~~~~~~R------------~~~l~~L~~~l~~~~~~~~~~~ll-~pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
.+...|.... .|.-+ ..++.||..++...+...+..+++ .-++.-...+++.-|..-.+|+-.+..
T Consensus 175 Li~~fL~~e~-DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~ 253 (948)
T KOG1058|consen 175 LIESFLLTEQ-DPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLS 253 (948)
T ss_pred HHHHHHHhcc-CchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHh
Confidence 2333443211 22222 345667766666665432222222 222221122556555555555544443
Q ss_pred HcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCccccc
Q 000167 1042 AGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSV 1121 (1972)
Q Consensus 1042 ~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1121 (1972)
.-....+.+....|-. .+ ..|.+. +
T Consensus 254 stssaV~fEaa~tlv~---------------------------------------------lS--------~~p~al--k 278 (948)
T KOG1058|consen 254 STSSAVIFEAAGTLVT---------------------------------------------LS--------NDPTAL--K 278 (948)
T ss_pred cCCchhhhhhcceEEE---------------------------------------------cc--------CCHHHH--H
Confidence 3322111111110000 00 000000 0
Q ss_pred chhhhhhhhccc-----cCCCChHHhhhhhcccccccCCChhhHHHHHHHHHHhhh---HHHHHhhcCccHHHHHHHHHH
Q 000167 1122 QDFAVQSQALLN-----VKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR---EDLHRRLLSTDFKKQVDGLEM 1193 (1972)
Q Consensus 1122 ~~~~~~~~~~~~-----~~~~~k~~R~~~~~~k~~f~~~~~e~ve~L~~q~~~~~~---~~l~~~lf~~d~k~~~~al~~ 1193 (1972)
..++..+. ..+|.|- .+ .|-+.+|++....++. =+++.-|-+.|+.-|-++++.
T Consensus 279 ----~Aa~~~i~l~~kesdnnvkl-----Iv---------ldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi 340 (948)
T KOG1058|consen 279 ----AAASTYIDLLVKESDNNVKL-----IV---------LDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDI 340 (948)
T ss_pred ----HHHHHHHHHHHhccCcchhh-----hh---------HHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHH
Confidence 00000100 0112121 10 0111122221222222 267777889999999999998
Q ss_pred HHHhcCcchhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhCCChHHHH
Q 000167 1194 LQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVR 1273 (1972)
Q Consensus 1194 L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~Gd~k~~vr 1273 (1972)
..+...+. |..-+..++..++.+||..-..+.-.|=+.|+..+....-.|.++ |+..||.|++-+||..+..-
T Consensus 341 ~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~-aatvV~~ll~fisD~N~~aa 413 (948)
T KOG1058|consen 341 ALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV-AATVVSLLLDFISDSNEAAA 413 (948)
T ss_pred HHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHhccCCHHHH
Confidence 77775442 333355666778888877655555566666677776666778877 88899999999999887776
Q ss_pred HHHHHHHHHHhhcCCc
Q 000167 1274 EKMRELTKQIVNFYSA 1289 (1972)
Q Consensus 1274 ~~v~~il~~~~~v~~~ 1289 (1972)
..|-..++.....||.
T Consensus 414 s~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 414 SDVLMFVREAIEKFPN 429 (948)
T ss_pred HHHHHHHHHHHHhCch
Confidence 6665555555555553
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.26 Score=64.41 Aligned_cols=364 Identities=20% Similarity=0.204 Sum_probs=208.0
Q ss_pred hhcCCChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh
Q 000167 10 EAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (1972)
Q Consensus 10 ~~~~lpl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~ 89 (1972)
+|---|+-.-+.|++-=.|..+---+.+++....+ --.-.-+.+.++.++.|+|+.|--.|+.+|....+.-...
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~--~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~--- 194 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD--LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV--- 194 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh--hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC---
Confidence 44444566666666666666666666666542111 0001124566677788888888888888887776654321
Q ss_pred hhHHHHHHHHHhhcCCChhHHHHH----HHHHHHHHhhh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC-
Q 000167 90 YAKEVCDAIAAKCLTGRPKTVEKA----QAVFMLWVELE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK- 162 (1972)
Q Consensus 90 ~~~~v~~~LveK~l~~k~~~k~~a----~~~ll~~~E~~--~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~- 162 (1972)
....+.+.++.+.+.+....-+.+ ++++..|.--+ ..+.+++.+.+.+.|-|+-++.+++..+...+..+-.-
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN 274 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence 111233334444443333333333 33333333111 12467777788888888888888888887777655430
Q ss_pred ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhh
Q 000167 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (1972)
Q Consensus 163 ~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (1972)
..-.+.+-+.+..+++... . +---.+++++- ++...+.....++.-.|-
T Consensus 275 ~~~~~K~~~pl~tlls~~~-e-------~qyvaLrNi~l------il~~~p~~~~~~~~~Ff~----------------- 323 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSES-E-------IQYVALRNINL------ILQKRPEILKVEIKVFFC----------------- 323 (734)
T ss_pred HHHHHHhcccceeeecccc-h-------hhHHHHhhHHH------HHHhChHHHHhHhHeeee-----------------
Confidence 0012223333333333211 1 00011222210 001111111001100000
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC
Q 000167 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 322 (1972)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~ 322 (1972)
.+.|| .| .+.+-++.+..+++. .+
T Consensus 324 -------------------------------kynDP-----------iY---------vK~eKleil~~la~~-----~n 347 (734)
T KOG1061|consen 324 -------------------------------KYNDP-----------IY---------VKLEKLEILIELAND-----AN 347 (734)
T ss_pred -------------------------------ecCCc-----------hh---------hHHHHHHHHHHHhhH-----hH
Confidence 01111 11 122344555555532 23
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH
Q 000167 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV 402 (1972)
Q Consensus 323 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~ 402 (1972)
..++...|+..-.+..+..+..|++||+.+|...... ..++..+|+.+.-+...|++.+...+..++.+..-..+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 5567778888778889999999999999999887654 56899999999988888988888999999987223346
Q ss_pred hHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCch
Q 000167 403 DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1972)
Q Consensus 403 ~il~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~ 479 (1972)
.++..+...+.+ .+|..|......+....+..+. ...++..+.+...|...+| ..+.+.+.+++|+.+
T Consensus 423 ~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a~elL~~f~en~~dE~~~V---ql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------ALELLESFLENFKDETAEV---QLELLTAAIKLFLKK 491 (734)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------HHHHHHHHHhhcccchHHH---HHHHHHHHHHHHhcC
Confidence 777777777764 6789886655555554444332 2556677788888887777 677788888877754
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.7 Score=53.68 Aligned_cols=148 Identities=10% Similarity=0.075 Sum_probs=91.3
Q ss_pred cCChHHHHHHHHHHHHHhc-CCC----------CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh-------
Q 000167 296 ATKWSERKDAVAELTKLAS-TKR----------IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR------- 357 (1972)
Q Consensus 296 s~kWkeR~eaL~~L~~l~~-~~k----------i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~------- 357 (1972)
+..-|.|..||-.+..+++ -|+ +..++-+.--..+.-.++|.|.+++..|++....|-.|-+
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~ 86 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAE 86 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3445778899988776653 222 1111111111122334679999999999999988876643
Q ss_pred ----hchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHH
Q 000167 358 ----THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIE 432 (1972)
Q Consensus 358 ----~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~ 432 (1972)
..|.||...+.-.+++ +- .+ ++.+|. .-.|++-.+++..|+.++.
T Consensus 87 ~~~~~~ftpf~v~~a~si~~-----------~~-r~------------------l~~~l~~e~~~~~~tq~~kcla~lv~ 136 (728)
T KOG4535|consen 87 DTSDHAFTPFSVMIACSIRE-----------LH-RC------------------LLLALVAESSSQTVTQIIKCLANLVS 136 (728)
T ss_pred ccCCcCCCchHHHHHHHHHH-----------HH-HH------------------HHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 2355554433322221 11 11 112222 3456677778888888888
Q ss_pred hcChhHHH-HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 433 TSSKAAVL-KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 433 ~~~~~~l~-~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
..+-..+. ..+-.+...+++.+..+|+.||-.+.-.++.+.
T Consensus 137 ~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v 178 (728)
T KOG4535|consen 137 NAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV 178 (728)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 77655554 456778888999999999999988887777654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.085 Score=59.36 Aligned_cols=108 Identities=16% Similarity=0.249 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCC
Q 000167 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKV 416 (1972)
Q Consensus 338 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~-il~~l~~~l~~Kn 416 (1972)
|..|+..++.+++.|+... ...++..+|.+...+.|..+.||..+..++..++..+...+.. ++..++.++.+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 4568889999999998765 4566667889999999999999999999999998874455544 4488888999999
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000167 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1972)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1972)
+.||..+..++..+.....+..+...+.+++-.
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~ 109 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISS 109 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 999999999999988774444453333333333
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0072 Score=53.79 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
|.+|..++..|.++.. .....+.++++.++|.|..+|.|++++||.+|..+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~-~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE-GCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTT-TTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhc-ccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999988433 344456678899999999999999999999999999754
|
... |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.025 Score=55.35 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=69.7
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000167 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1972)
Q Consensus 368 lp~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1972)
+|.|++.+ .++.+.||..+..+|. . ..-..+++.+...+++++|.+|..++..|..+ . -+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~--~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~----------~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----E--LGDPEAIPALIELLKDEDPMVRRAAARALGRI-G----------DPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----C--CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H----------HHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----H--cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C----------CHHH
Confidence 57889988 9999999987766665 2 45568899999999999999999999998864 1 1567
Q ss_pred HHHHHHHhcC-CChHHHHHHHHHHH
Q 000167 447 VPICMECLND-GTPEVRDAAFSVLA 470 (1972)
Q Consensus 447 ~p~l~k~l~D-s~~~VR~aA~~~l~ 470 (1972)
++.|.+.+.| .+..||.+|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 8889998866 45677999999885
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.1 Score=53.54 Aligned_cols=239 Identities=15% Similarity=0.187 Sum_probs=162.1
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccc
Q 000167 172 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELIS 251 (1972)
Q Consensus 172 ~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~ 251 (1972)
.|-+.|.+.|..+|..|+.++.++...+.++ .|...++.-|-+-|
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--------~L~~~ev~~L~~F~--------------------------- 47 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--------FLSRQEVQVLLDFF--------------------------- 47 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--------hccHHHHHHHHHHH---------------------------
Confidence 4566788899999999999998888777542 23444444333322
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 000167 252 EDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLK 331 (1972)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~ 331 (1972)
.+++ .+|.-=..++..+.+|++...+..+....++..+.
T Consensus 48 ---------------------------------------~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~ 86 (262)
T PF14500_consen 48 ---------------------------------------CSRL--DDHACVQPALKGLLALVKMKNFSPESAVKILRSLF 86 (262)
T ss_pred ---------------------------------------HHHh--ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHH
Confidence 1222 23333345567777777655555555555555554
Q ss_pred HHhc--ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHH
Q 000167 332 KLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1972)
Q Consensus 332 k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l 408 (1972)
+-+. .--...+....+++..|...-+.....+...++..++..+ +||.|.-.--+...+..+... ..+....+++
T Consensus 87 ~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~l 164 (262)
T PF14500_consen 87 QNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE--FDISEFAEDL 164 (262)
T ss_pred HhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccchhHHHH
Confidence 4333 2222345566677777776655555566677888888887 888888777788888887776 4556777777
Q ss_pred HHHhh---------cCC-h--HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 000167 409 KTSVK---------NKV-P--LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1972)
Q Consensus 409 ~~~l~---------~Kn-p--~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 476 (1972)
.+.+. .+| | -.|.+.-.-|..|+..++. +.+..+|.+..-|..+.+.|+.-+.++|......+
T Consensus 165 Fd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 165 FDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred HHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 66542 122 2 4666777777888775432 23678899999999999999999999999999999
Q ss_pred CchhHHHhHhhccHHHH
Q 000167 477 GMRPLERSIEKLDDVRR 493 (1972)
Q Consensus 477 ge~~~~~~l~~Ld~~~~ 493 (1972)
|.+.+.++...+=..-|
T Consensus 240 ~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 240 GADSLSPHWSTIWNALK 256 (262)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 98888888887754433
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.31 E-value=9.5 Score=53.82 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=57.0
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
.+++.++..|+..+....+.+|.-|+..|..+++. ++..+ ..+.+...+-.-++|+...||+||.+.+|.+.-...+
T Consensus 812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~-Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEA-DPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhc-ChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence 45667778888888877788898888888876653 33333 3466777777788899999999999888887755543
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.8 Score=57.04 Aligned_cols=154 Identities=20% Similarity=0.148 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHH
Q 000167 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1972)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~ 944 (1972)
..|..|..++..+..+-. .+....|...+.|....|+..|...++.+.... ..+.+.+...
T Consensus 161 ~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 161 ALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred hHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 346788888887765431 566778888889988899999988888775433 5677888999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCC
Q 000167 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024 (1972)
Q Consensus 945 L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~ 1024 (1972)
+.|....||.++..++..+ +...-.+.+...+.+. ++..+.....++. .........++...+.|.
T Consensus 222 ~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 287 (335)
T COG1413 222 LSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLIDE 287 (335)
T ss_pred hcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhcc
Confidence 9999999999988877654 5566667778888765 4555555555543 112234556678889999
Q ss_pred CHHHHHHHHHHHHHHHHHcChhHHHHH
Q 000167 1025 SSDVRKAAEACIVEILRAGGQETIEKN 1051 (1972)
Q Consensus 1025 ~~dVR~aA~~~l~~l~~~~G~~~~~~~ 1051 (1972)
+..+|..+...+..+.......+....
T Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~a~~~~ 314 (335)
T COG1413 288 ANAVRLEAALALGQIGQEKAVAALLLA 314 (335)
T ss_pred hhhHHHHHHHHHHhhcccchHHHHHHH
Confidence 999999998888777655544444433
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.038 Score=61.72 Aligned_cols=138 Identities=22% Similarity=0.282 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHH-hhhchhhhhhhHHHHH-----------HHH-hccCcHHHHHHHHHHHHHHHHhc---------
Q 000167 340 AVAVEAIQAIGNLARG-LRTHFSGSSRFLLPVL-----------LEK-LKEKKPTVAESLTQTLQAMHKAG--------- 397 (1972)
Q Consensus 340 ~V~~~A~~~l~~La~~-L~~~f~~~~~~llp~L-----------L~k-lkdkk~~V~~aa~~aL~al~~~~--------- 397 (1972)
+|+..|+.|++.+++. -++.|-.|+..++|.- +.. ++|..+.||.++..++.+++...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3788999999999999 4567888988888876 222 58999999999999999998751
Q ss_pred ----C---CCh----HhHH----HHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHHhcCCChH
Q 000167 398 ----C---LNL----VDVV----EDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (1972)
Q Consensus 398 ----~---~~l----~~il----~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~l~Ds~~~ 460 (1972)
. +++ ..++ ..+..+++ .+++.+-.++++.+..+++.++-..+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 122 2222 33455566 578889999999999999988766554 56788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000167 461 VRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 461 VR~aA~~~l~~l~~~~g 477 (1972)
||.++.-|++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876544
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.045 Score=56.49 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=84.1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---CC-ChH-hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CL-NLV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~---~~-~l~-~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (1972)
.+++.+++.+.+.+..++..+..++..+.... .. -.. .+++.+...+.+.++.++..++..|..+....+. ...
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED-NKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH-HHH
Confidence 37888999999999999999999999887541 00 012 5788888999999999999999999998765432 222
Q ss_pred Hhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 441 ~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
... ..+++.+.+++++.+.++|..|..+|+.+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 223 448999999999999999999999998764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.01 Score=46.22 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000167 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 446 l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 475 (1972)
++|.+.++++|.+++||.+|..+++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.92 E-value=3.3 Score=54.62 Aligned_cols=250 Identities=17% Similarity=0.220 Sum_probs=130.9
Q ss_pred hCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHH
Q 000167 728 DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807 (1972)
Q Consensus 728 ~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~ 807 (1972)
++.+|-+|..++.+...++..-.- -+..++....++ |.+.+.+|--++..++.+|-.. +++..+++.++-|.+..
T Consensus 152 ~~~~~~irKKA~Lca~r~irK~P~---l~e~f~~~~~~l-L~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~l~~~lV~ 226 (866)
T KOG1062|consen 152 QHRDPYIRKKAALCAVRFIRKVPD---LVEHFVIAFRKL-LCEKHHGVLIAGLHLITELCKI-SPDALSYFRDLVPSLVK 226 (866)
T ss_pred hCCCHHHHHHHHHHHHHHHHcCch---HHHHhhHHHHHH-HhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 455666666666555555542110 022344445556 7777777777777777777643 44445566676666666
Q ss_pred HHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHc--c
Q 000167 808 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA--N 885 (1972)
Q Consensus 808 ~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a--~ 885 (1972)
.|..-.... + .|.-. ..|..|.+=.+.| . -++.-++..+-..-...-+-|.+++... +
T Consensus 227 iLk~l~~~~-y----speyd----------v~gi~dPFLQi~i----L-rlLriLGq~d~daSd~M~DiLaqvatntdss 286 (866)
T KOG1062|consen 227 ILKQLTNSG-Y----SPEYD----------VHGISDPFLQIRI----L-RLLRILGQNDADASDLMNDILAQVATNTDSS 286 (866)
T ss_pred HHHHHhcCC-C----CCccC----------ccCCCchHHHHHH----H-HHHHHhcCCCccHHHHHHHHHHHHHhccccc
Confidence 665543221 0 00000 0000111000000 0 1112222221111111112233333211 1
Q ss_pred ccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHcChh--------------hH-hhhhhHHHHHHHHhCCCc
Q 000167 886 KRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPA--------------VE-KSSKGVLSDILKCLGDNK 949 (1972)
Q Consensus 886 ~~I~~~~~~eL~~~L~~~L-~DsN~~V~~~Al~~l~~La~alg~~--------------~~-~~~~~llp~ll~~L~D~k 949 (1972)
+.+.. .=|..+....+ =++|..++..|+++|+.+...-..+ .+ ..+..-=..|++||+|..
T Consensus 287 kN~Gn---AILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD 363 (866)
T KOG1062|consen 287 KNAGN---AILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD 363 (866)
T ss_pred ccchh---HHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc
Confidence 11111 11222222222 2345555666666666554221111 11 122333467899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC
Q 000167 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1972)
Q Consensus 950 ~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~ 1007 (1972)
..+|.-|.+-+.+++..-++..++..+...|... .++.|.++...+....+...+.
T Consensus 364 ~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNESNVRVMVKELLEFLESS--DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999865 5788999988888777776553
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.39 Score=61.26 Aligned_cols=307 Identities=16% Similarity=0.154 Sum_probs=178.2
Q ss_pred hhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC--h
Q 000167 360 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--K 436 (1972)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~-il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~--~ 436 (1972)
.....+.+...+...+.+....||.+|.++|-++-.. ..+.. +.......|.+.+-.||.++++.+...-..++ .
T Consensus 192 ~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 192 LTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred ccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc--ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3333455556688889999999999999999988763 44443 45666678889999999999888876555553 1
Q ss_pred h---HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCC
Q 000167 437 A---AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSS 513 (1972)
Q Consensus 437 ~---~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~ 513 (1972)
. .=.++.+...-.++.++.|..-.||-.|+++||.|..+-.+ .+. ..||..-+..++.- +..
T Consensus 270 e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee-~i~---QTLdKKlms~lRRk--r~a--------- 334 (823)
T KOG2259|consen 270 ERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE-IIQ---QTLDKKLMSRLRRK--RTA--------- 334 (823)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH-HHH---HHHHHHHhhhhhhh--hhc---------
Confidence 1 11256677788889999999999999999999988765443 222 33443222111110 000
Q ss_pred CccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 000167 514 ARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593 (1972)
Q Consensus 514 ~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee 593 (1972)
+++|..-- ++|.-+ ++++-. .|+ +.|+
T Consensus 335 ------------------------------hkrpk~l~---------s~GewS------sGk~~~---adv-----psee 361 (823)
T KOG2259|consen 335 ------------------------------HKRPKALY---------SSGEWS------SGKEWN---ADV-----PSEE 361 (823)
T ss_pred ------------------------------ccchHHHH---------hcCCcc------cCcccc---ccC-----chhh
Confidence 00000000 000000 000000 000 1122
Q ss_pred HHHHhhccCc----HHHHHhhhcCChHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHH
Q 000167 594 IESRLGSLIP----ADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 668 (1972)
Q Consensus 594 ~e~~~~~ll~----~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~-~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~ 668 (1972)
.++...++++ ..++.+|.+.=...|.+|+..|..+..+- +-.....+.|+++ |+|-.-.|..+++..|.
T Consensus 362 ~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDM------fNDE~~~VRL~ai~aL~ 435 (823)
T KOG2259|consen 362 DDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDM------FNDEIEVVRLKAIFALT 435 (823)
T ss_pred ccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH------hccHHHHHHHHHHHHHH
Confidence 2222223443 45567777778889999999999887662 2222334555655 46777889999999999
Q ss_pred HHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHH--HhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHH
Q 000167 669 YLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTF--SEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1972)
Q Consensus 669 ~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l--~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i 746 (1972)
.++.+ ..+.+..+..++..|.|..- ++|+...+.|... ......+..+..+++.+ .|=|+-+-+.+..+..+-
T Consensus 436 ~Is~~-l~i~eeql~~il~~L~D~s~--dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L--~kyPqDrd~i~~cm~~iG 510 (823)
T KOG2259|consen 436 MISVH-LAIREEQLRQILESLEDRSV--DVREALRELLKNARVSDLECIDMCVAHLLKNL--GKYPQDRDEILRCMGRIG 510 (823)
T ss_pred HHHHH-heecHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh--hhCCCCcHHHHHHHHHHh
Confidence 88886 45556666655555555433 4566665544421 11112233444444443 245666666665554443
Q ss_pred H
Q 000167 747 E 747 (1972)
Q Consensus 747 ~ 747 (1972)
+
T Consensus 511 q 511 (823)
T KOG2259|consen 511 Q 511 (823)
T ss_pred c
Confidence 3
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.74 Score=59.47 Aligned_cols=180 Identities=15% Similarity=0.183 Sum_probs=107.1
Q ss_pred ccHHHHHhcC--CCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc-hHHHHHHHHHHHHHHHHHcC-hh
Q 000167 854 FTPTLVKSLE--SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMG-PA 929 (1972)
Q Consensus 854 l~~~ll~~l~--d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~Ds-N~~V~~~Al~~l~~La~alg-~~ 929 (1972)
|.|.|++.+. +.||- +-.+-++.. +-..+.|.....|+..|...+... ...+.-++++++-......| ++
T Consensus 219 LAP~ffkllttSsNNWm-----LIKiiKLF~-aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWV-----LIKLLKLFA-ALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred ccHHHHHHHhccCCCee-----hHHHHHHHh-hccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 5578888764 44897 223333332 234566776567888888877443 33445555555433311122 23
Q ss_pred hHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC
Q 000167 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1972)
Q Consensus 930 ~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~ 1007 (1972)
-...+...+..+-..+-|+.++.+--+..|+..+...-+ +....+.+..+|.+. .+..|..+|..|-..+. .
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVs----k 366 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVS----K 366 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhh----h
Confidence 344455666666677788999999888888888776533 344455788888776 46678888887766554 2
Q ss_pred CChhhhHHHHHhhcCCCCH-HHHHHHHHHHHHHHHHcCh
Q 000167 1008 PDAAHLLKPASIAMTDKSS-DVRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~-dVR~aA~~~l~~l~~~~G~ 1045 (1972)
..+..+++-+...+.+..+ ..|..-..-+-.++..-.|
T Consensus 367 kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY 405 (877)
T KOG1059|consen 367 KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY 405 (877)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence 2455666667776666555 5555443333334433333
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.02 Score=59.20 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=82.6
Q ss_pred cHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCCh-hhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~-~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
-+.+++.+.+.+|..|..++..+..+.... ........ .++++.|.+.|.|.|..++..|+.+++.|+..-......+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 346777888889999999999999987531 11111111 3677888888899999999999999999987543333333
Q ss_pred hh-hHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000167 934 SK-GVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1972)
Q Consensus 934 ~~-~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~ 964 (1972)
.. .+++.+++.+.+.+..++..+..++..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 48999999999999999999998888764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.15 Score=62.34 Aligned_cols=294 Identities=19% Similarity=0.194 Sum_probs=149.0
Q ss_pred hhcCCChHHHHHHHHHHHHHhhccCCC-----------CchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhh
Q 000167 19 RLLHKNWKVRNEANIDLAALCDSITDP-----------KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA 87 (1972)
Q Consensus 19 rl~~k~WK~R~~ayeel~~~~~~~~d~-----------~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~ 87 (1972)
++.|-.-|.|..|+--+....+.++.. +.|+.. -..++.-.++|.|+.+.--||+.+.+++..... |
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g-~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~-f 81 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELG-SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ-F 81 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCC-CceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-H
Confidence 456777899999999888877654211 001110 012333468999999999999999988876532 2
Q ss_pred hhhhHHHHHHHHHhhcCCChhHHH------HHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC
Q 000167 88 GRYAKEVCDAIAAKCLTGRPKTVE------KAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA 161 (1972)
Q Consensus 88 ~~~~~~v~~~LveK~l~~k~~~k~------~a~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~ 161 (1972)
-....+.- +-.|+ |=..- .+-.|++...|.| -.|.++..|+.+|..++.+-..
T Consensus 82 ls~a~~~~----~~~ft--pf~v~~a~si~~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p~ 140 (728)
T KOG4535|consen 82 LSVAEDTS----DHAFT--PFSVMIACSIRELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAPY 140 (728)
T ss_pred HHHHhccC----CcCCC--chHHHHHHHHHHHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCch
Confidence 11110000 00000 10011 1223333333332 3566778888888888876433
Q ss_pred CccC---hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHH--hcc-CCCCCCc
Q 000167 162 KIIP---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELV--NVS-GTARPTR 235 (1972)
Q Consensus 162 ~~~~---~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~--k~~-~~~~P~R 235 (1972)
..+. +-.+.-.+.++..|+|++||-.+..+++.|..--. -++.++. .|..... +.. .-..|..
T Consensus 141 ~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~----------~~pei~~-~~~~~~s~~n~~~~h~s~~~ 209 (728)
T KOG4535|consen 141 DRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHA----------PLPEVQL-LLQQPCSSSNSATPHLSPPD 209 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCC----------CCHHHHH-HhcCCCccccccCCCCCChH
Confidence 3222 23577889999999999999998877665542211 1222221 1100000 000 0000100
Q ss_pred chhhhhhHhhhhhccccCCCCCCCCCC--CCCCCCCCCCCCCCCcccccccCcccchhh------hhcc--CChHHHHHH
Q 000167 236 KIRAEQDKELGQELISEDVGPGPSEES--TADVPPEIDEYELVDPVDILTPLEKSGFWE------GVKA--TKWSERKDA 305 (1972)
Q Consensus 236 ~~rs~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~------~l~s--~kWkeR~ea 305 (1972)
.. ++.. ++++.+. .+.+.....+--++.++--..-+++.+-+. .+++ .---.|.|+
T Consensus 210 ~~-----~~l~---------~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~ 275 (728)
T KOG4535|consen 210 WW-----KKLP---------AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEA 275 (728)
T ss_pred HH-----HhcC---------CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHH
Confidence 00 0000 0000000 000011111222222221111122222111 1111 122368888
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhch
Q 000167 306 VAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360 (1972)
Q Consensus 306 L~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f 360 (1972)
++-|..++..-.+....+.++.+.+.+.+.|.-..+-.-+..|+..+..++....
T Consensus 276 ~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~ 330 (728)
T KOG4535|consen 276 LQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQY 330 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhc
Confidence 8888777643333334456777888888889988899999999999999888443
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.35 Score=59.24 Aligned_cols=185 Identities=17% Similarity=0.134 Sum_probs=120.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCC---CChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcC--hhhH
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQP---AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAVE 931 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~---~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg--~~~~ 931 (1972)
+.+..+.+++-+.|.+||+.+..++.. ..... ..+..|+..+.+.++-....=...|+++++.++-.+| .+-+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~--~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSS--RYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 567778999999999999999999974 12211 1246788888887765555567788999999999987 5667
Q ss_pred hhhhhHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhcC--chh------hHHHHHHHH--hc-CC-------CChhHHH
Q 000167 932 KSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWLAAVH--LDK------MVPYVTTAL--TD-AK-------LGAEGRK 991 (1972)
Q Consensus 932 ~~~~~llp~ll~~L~D~k~--~Vr~Aa~~aL~~i~~~~~--l~~------ll~~l~~~L--~~-~~-------~~~~~R~ 991 (1972)
...+.+.|.+...+.|... .+|.++..||..+.-.++ .+. .+..++... +. ++ .++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 7888899999998888654 467787777775544433 222 233232222 21 11 0123443
Q ss_pred HH-HHHHHHHhccCCCC--CC-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 992 DL-FDWLSKQLTGLSGF--PD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 992 ~~-l~~L~~~l~~~~~~--~~-~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
.+ -.| .-++...+.. .. +...+..+...|+..+.+||.+|-+++..++....
T Consensus 205 aAL~aW-~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAW-ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 33 334 2233333321 12 23334448888999999999999999998877655
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.22 Score=61.92 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=134.0
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHccccCCC-CChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHH
Q 000167 860 KSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (1972)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~-~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ll 938 (1972)
....+..|+.|....--+.++... +.+.. ..+++++..|..+..|++..++..|+.+|+.++..+......|...++
T Consensus 224 ss~ts~~~~~ritd~Af~ael~~~--~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~l 301 (533)
T KOG2032|consen 224 SSITSEKENGRITDIAFFAELKRP--KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQL 301 (533)
T ss_pred cccchhcccchHHHHHHHHHHhCc--ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHH
Confidence 445667899999888888887752 33332 236899999999999999999999999999999998888999999999
Q ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHHH-------HHHHhcCCCChhHHHHHHHHHHHHhccCCC--CC
Q 000167 939 SDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYV-------TTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FP 1008 (1972)
Q Consensus 939 p~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l-------~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--~~ 1008 (1972)
-.++..|-| .+..|.-.+..||..+.+......+-+++ -..+.+. +++.|...+-.+.....-.+. ..
T Consensus 302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~ 379 (533)
T KOG2032|consen 302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEE 379 (533)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchh
Confidence 888877755 55778888889998888877544433322 2233333 577887766544332221111 11
Q ss_pred C----hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000167 1009 D----AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1972)
Q Consensus 1009 ~----~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~ 1053 (1972)
. +..-..|+.-.|+|+++-|-.|.+..+....-.++-+....+++
T Consensus 380 ~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 380 FFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred hhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 1 23344567888999999998888887776666666665555554
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.42 E-value=21 Score=50.70 Aligned_cols=115 Identities=22% Similarity=0.223 Sum_probs=90.0
Q ss_pred chhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000167 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1972)
Q Consensus 359 ~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~--~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (1972)
.|.+-...++.-|+--+++....+|.-|..||..++... ...-.++...+..-+.+....||.+++..+.+++-..+.
T Consensus 809 ~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence 344444555666777788999999999999999998761 122345666666777788899999999999998876543
Q ss_pred hHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 437 ~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
+...+-..+...+.|+.-.||+.+.+-+..++.-.+.
T Consensus 889 -----~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 889 -----LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred -----HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 2366677889999999999999999999999877664
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=95.34 E-value=6.2 Score=49.89 Aligned_cols=313 Identities=16% Similarity=0.205 Sum_probs=184.2
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhccccc------hhHHHHHHHHhc----CCCCccc-hHHHHHHHHHHHHHHHHHc---
Q 000167 609 QLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAATA--- 674 (1972)
Q Consensus 609 ~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~lv~~L~~----~p~~~Ds-N~qV~~~~Le~l~~l~~~~--- 674 (1972)
+|.+.+--.|.+||..|...++..+... ...+.+.+++.. .+.=++. +..+..+++.++..++...
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 3566777889999999999988744321 123444444432 1222333 6678888999998887531
Q ss_pred CCCchhhHHHHHHHHHhhhcchh-hhHHHHHHHHHHHh-hcChhHH----HHHHHHhh---hh-CCChHHHHHHHHHHHH
Q 000167 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIM---KD-HKNPKVLSEGILWMVS 744 (1972)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgd~K-~r~~a~~~L~~l~e-~~~~~~v----l~~l~~~l---~~-~KnpKv~~e~l~~L~~ 744 (1972)
..++......++...++.+.++. .|..+...|..+.+ .+++.++ ...++..+ .+ -++.-+..|.+..+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 34555566668888888888865 46666666666654 5555432 23333322 22 3456678899999999
Q ss_pred HHHHhCCC-CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCC
Q 000167 745 AVEDFGVS-HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1972)
Q Consensus 745 ~i~~fG~~-~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~ 823 (1972)
++..|... .-+...-++.+... +-++...+|..|+.+...+...+|+.- .+-+.+.+.++..-.
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~---------~~s~~~~~~~~~~~~----- 225 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNK---------ELSKSVLEDLQRSLE----- 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhH---------HHHHHHHHHhccccc-----
Confidence 99877542 11222344444443 678899999999999988888887531 111222222221100
Q ss_pred CCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCC-CCHHHHHHHHH---HHHHHHHHccccCCC-CChhhHHH
Q 000167 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIE---AVNKILEEANKRIQP-AGTGELFG 898 (1972)
Q Consensus 824 p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d-~~Wk~R~eale---~l~~ll~~a~~~I~~-~~~~eL~~ 898 (1972)
+. .+...+.+.+.+.+.+ ++.+ .+++ .+-.++. +..+.. ..+.+.+.
T Consensus 226 ----------------------~~-~~~~~~~~~L~~mi~~~~~~~---~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~ 277 (372)
T PF12231_consen 226 ----------------------NG-KLIQLYCERLKEMIKSKDEYK---LAMQIWSVVILLLG--SSRLDSWEHLNEWLK 277 (372)
T ss_pred ----------------------cc-cHHHHHHHHHHHHHhCcCCcc---hHHHHHHHHHHHhC--CchhhccHhHhHHHH
Confidence 00 0001122223333333 2211 1122 2223331 122222 23578888
Q ss_pred HHHhccccchHHHHHHHHHHHHHHHHHcChh---hHhhhhhHHHHHHHHhCCCc-----HHHHHHHHHHHHHHH
Q 000167 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPA---VEKSSKGVLSDILKCLGDNK-----KHMRECTLTVLDAWL 964 (1972)
Q Consensus 899 ~L~~~L~DsN~~V~~~Al~~l~~La~alg~~---~~~~~~~llp~ll~~L~D~k-----~~Vr~Aa~~aL~~i~ 964 (1972)
.....+++++..++..|+.+...+.-.+..+ ..+.++.+..++...+.-.+ ..++.++..++..+.
T Consensus 278 v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 278 VPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 8888999999999999999999999877654 34667778888877775322 256777766665443
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.58 Score=58.34 Aligned_cols=211 Identities=16% Similarity=0.145 Sum_probs=138.7
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
.+.+.+.+.+|++|...+--+..+...+.+.. +..++++..+.....|++..++..||.+|+.++.++..+.-.|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 34455788999999988877777776554543 67888999999999999999999999999999999877777788888
Q ss_pred HHHHHHHhcc-CcHHHHHHHHHHHHHHHHh-cCCChHh----HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---H
Q 000167 368 LPVLLEKLKE-KKPTVAESLTQTLQAMHKA-GCLNLVD----VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---A 438 (1972)
Q Consensus 368 lp~LL~klkd-kk~~V~~aa~~aL~al~~~-~~~~l~~----il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---~ 438 (1972)
+-.|+-.+-| -+..|.-.+..||..+... ....+.. +.-.+-..+++-++++|..+...+..+..-.+.. .
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 8887777644 3456666666777766654 1122222 2233345566889999999888888776654432 2
Q ss_pred HHH-hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHH
Q 000167 439 VLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1972)
Q Consensus 439 l~~-~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~ 500 (1972)
+.. ..+.+.| +.-.++|++|.|-.|.+..+-+..--++-+....+++..-+..+..+.+.+
T Consensus 381 Fte~v~k~~~~-lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fy 442 (533)
T KOG2032|consen 381 FTEQVKKRLAP-LLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFY 442 (533)
T ss_pred hHHHHHhcccc-ceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHH
Confidence 211 1123223 233479999999777776665544444434455555533233333444443
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.1 Score=50.97 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=67.0
Q ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHH
Q 000167 938 LSDILKCL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1972)
Q Consensus 938 lp~ll~~L-~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (1972)
+|.+++.| .|..+.||..+..+|. ..+-..++|.+...+.++ ++.+|..++..|... .....+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i--------~~~~~~~~ 66 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDE--DPMVRRAAARALGRI--------GDPEAIPA 66 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSS--SHHHHHHHHHHHHCC--------HHHHTHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCC--CHHHHHHHHHHHHHh--------CCHHHHHH
Confidence 57888888 9999999999988888 445567899999999876 799999999998742 12345555
Q ss_pred HHhhcCC-CCHHHHHHHHHHHH
Q 000167 1017 ASIAMTD-KSSDVRKAAEACIV 1037 (1972)
Q Consensus 1017 l~~~L~D-~~~dVR~aA~~~l~ 1037 (1972)
+...+.| .+..||.+|..+|+
T Consensus 67 L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 67 LIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHhhcC
Confidence 7787755 56678999988874
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.08 E-value=5.8 Score=52.36 Aligned_cols=52 Identities=15% Similarity=0.005 Sum_probs=36.3
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCChhhhH-HHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000167 986 GAEGRKDLFDWLSKQLTGLSGFPDAAHLL-KPASIAMTDKSSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 986 ~~~~R~~~l~~L~~~l~~~~~~~~~~~ll-~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1972)
|..+|.++...|+.+.... ..+.+-+ .-+..|++|++.+||+.|..++..+-
T Consensus 479 n~ivRaaAv~alaKfg~~~---~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFGAQD---VVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhHHHHHHHHHHHhcCC---CCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3557888888887655211 1223333 33677999999999999999988776
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=94.83 E-value=22 Score=47.87 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCC
Q 000167 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLG 986 (1972)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~~~~ 986 (1972)
.|+..++-+++.||-+-+ ..++.++|.+.+-|.-+. ..||.-..-++..++.+.+ .+..+|.|...|.++ +
T Consensus 946 ~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp--~ 1019 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDP--S 1019 (1529)
T ss_pred HHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCc--h
Confidence 466778888888887654 556777888888776444 4589888889998888875 689999999999988 6
Q ss_pred hhHHHHHHHHHHHHhccCCCCCCh-hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 987 AEGRKDLFDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 987 ~~~R~~~l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
+.+|..++..|++.++.--. .+ -.+..-++..+-|.+.+||.-|..|+..+...-.
T Consensus 1020 ~iVRrqt~ilL~rLLq~~~v--Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1020 VIVRRQTIILLARLLQFGIV--KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred HHHHHHHHHHHHHHHhhhhh--hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence 89999999999988763211 11 1233446677899999999999999998886543
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.41 Score=61.56 Aligned_cols=207 Identities=16% Similarity=0.186 Sum_probs=133.2
Q ss_pred cccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcCh
Q 000167 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1972)
Q Consensus 849 dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~ 928 (1972)
|+...+---++...++++-++|...++-+..++. .+..|....|..|...|..|+.|.-++|+.+|+.++..+=..-+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 4444444466788899999999999999988886 346676667888999999999999999999999988876421111
Q ss_pred hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC
Q 000167 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (1972)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~ 1008 (1972)
+-.+ +..++-.+++ .|..+.||.+|..++.- -...+|.|.+--.+- +...|.-+...+...+ .... .
T Consensus 160 ee~~-v~n~l~~liq--nDpS~EVRRaaLsnI~v------dnsTlp~IveRarDV--~~anRrlvY~r~lpki-d~r~-l 226 (892)
T KOG2025|consen 160 EECP-VVNLLKDLIQ--NDPSDEVRRAALSNISV------DNSTLPCIVERARDV--SGANRRLVYERCLPKI-DLRS-L 226 (892)
T ss_pred Cccc-HHHHHHHHHh--cCCcHHHHHHHHHhhcc------CcccchhHHHHhhhh--hHHHHHHHHHHhhhhh-hhhh-h
Confidence 1111 2233333333 79999999998665521 123456666655543 4566777766665444 1111 1
Q ss_pred ChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH-----HHHHHHHHHhh
Q 000167 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP-----ALALILERIKL 1069 (1972)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~-----~~~~I~~~l~k 1069 (1972)
.....+.-+-..|+|+.-+||.+++.++..=.-.+....+...+..|+.+ ..+.|++.++.
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 22233333566899999999999998886422223333456677777643 34455555543
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.99 Score=54.90 Aligned_cols=174 Identities=18% Similarity=0.231 Sum_probs=118.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHccccC--CCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHHHHcCh------------
Q 000167 864 SPDWKVRLESIEAVNKILEEANKRI--QPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGP------------ 928 (1972)
Q Consensus 864 d~~Wk~R~eale~l~~ll~~a~~~I--~~~~~~eL~~~L~~~L~D-sN~~V~~~Al~~l~~La~alg~------------ 928 (1972)
.++|..-..++.++.+.+...+... -|.- ..+.+.|.+.|+- .-..|-+.||++.+.|.+.+|+
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k-~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~ 100 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHK-LQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSP 100 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHH
Confidence 4689999999999999998211111 2221 4456666666643 3455777777777777777665
Q ss_pred ------------------------------hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Q 000167 929 ------------------------------AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTT 978 (1972)
Q Consensus 929 ------------------------------~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~ 978 (1972)
.+.+.++.++..++-.+-|....+-+.+...++.+...++-+-+...++.
T Consensus 101 GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl 180 (307)
T PF04118_consen 101 GLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWL 180 (307)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHH
Confidence 33344455555555666677777777788888888888877777777777
Q ss_pred HHhcCCCChhHHHHHHHHHHHHhccCC------C--------CCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 979 ALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 979 ~L~~~~~~~~~R~~~l~~L~~~l~~~~------~--------~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
++.+ +|..|..++.|+.+.+.... . .++..-++..+..|++|.+-=|+..+-..| ..++.
T Consensus 181 ~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlL---l~~~P 254 (307)
T PF04118_consen 181 CIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLL---LSHFP 254 (307)
T ss_pred HHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHH---HHhCC
Confidence 7764 57899999999999998766 1 122233455688899999988887765444 55554
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.23 Score=67.19 Aligned_cols=134 Identities=15% Similarity=0.149 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCCh
Q 000167 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGA 987 (1972)
Q Consensus 911 V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~~~~~ 987 (1972)
-....+.....++..||..+.+ +-..+|.++.++......+|.++..|+..+..... ...++..+...+.+. ..
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~--~~ 868 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL--DK 868 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch--hh
Confidence 4455677777888889988888 78899999999999999999999999999998764 233444444444421 11
Q ss_pred hHHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhH
Q 000167 988 EGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (1972)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~ 1047 (1972)
..|......+-.++..... .+...-+++|++.++.|....||.+|.+++..+...++.+.
T Consensus 869 ~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~ 931 (1549)
T KOG0392|consen 869 FVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEA 931 (1549)
T ss_pred HhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccccccc
Confidence 2333333333233332221 22333456779999999999999999999999999887654
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.042 Score=48.87 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000167 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963 (1972)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i 963 (1972)
.|+..|+.+|+.++...+..+.+|...++|.++..|.|.+..||.+|..||..+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 478889999999888888889999999999999999999999999999888653
|
... |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.21 Score=67.58 Aligned_cols=200 Identities=17% Similarity=0.175 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHH
Q 000167 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (1972)
Q Consensus 300 keR~eaL~~L~~l~~--~~ki~~~~y~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 374 (1972)
-+|+.|-..|.-+.. ++.+.. .|..+-+.|.+.+. |.|- -....+..+..++..++..+.+ .-..+|.++..
T Consensus 748 ~errgael~L~~l~~~fg~sl~~-klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLAA-KLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHHH-hcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 467777777766653 222221 23334444444444 3331 3444567777778788888888 77899999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhcC-CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHH
Q 000167 375 LKEKKPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (1972)
Q Consensus 375 lkdkk~~V~~aa~~aL~al~~~~~-~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 453 (1972)
.......||-++..|+..+++.+| .....+++.+..-++.-.--+|++...-+..++.......+.++..-+++.+..+
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 999999999999999999998622 1123455555555565555566666655555565544344567778899999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhCchh-------HHHhHhhccHHHHHHHHHHHhc
Q 000167 454 LNDGTPEVRDAAFSVLAAIAKSVGMRP-------LERSIEKLDDVRRNKLSEMIAG 502 (1972)
Q Consensus 454 l~Ds~~~VR~aA~~~l~~l~~~~ge~~-------~~~~l~~Ld~~~~kkI~e~~~~ 502 (1972)
+.|....||++|.+++..+..+++.+. +...+-.....-++.|+..++.
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldp 960 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDP 960 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCc
Confidence 999999999999999999999988532 2223333333345555555543
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.21 Score=55.55 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=96.1
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHH-ccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHH---HHHcChh
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---ASAMGPA 929 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~-a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~L---a~alg~~ 929 (1972)
+.+-|++++...+.--|.=|.+.+.+++.. +..+|.|-. .+|+..|+..|+-.|..|...+|++|+.| ....|..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 446789999888888888888899998886 556677764 89999999999999999999999999999 6778999
Q ss_pred hHhhhhhHHHHHHH--H----hC-----CCcHHHHHHHHHHHHHHHHhcCchhh
Q 000167 930 VEKSSKGVLSDILK--C----LG-----DNKKHMRECTLTVLDAWLAAVHLDKM 972 (1972)
Q Consensus 930 ~~~~~~~llp~ll~--~----L~-----D~k~~Vr~Aa~~aL~~i~~~~~l~~l 972 (1972)
+-||.+.++|.+-- . ++ ..++.+++-...+|..+-.+.|-+.+
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 99999999998762 1 22 24467888888888888888775543
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.78 Score=57.10 Aligned_cols=154 Identities=21% Similarity=0.211 Sum_probs=108.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (1972)
..+++.+.+.+|-+|..+...+..+- -.+.+..|...+.|.+..|+..|..+++.+. .+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 45777889999999999988754432 1678889999999999999999988666442 24
Q ss_pred hHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCC----------CChhHHHHHHHHHHHHhccC
Q 000167 936 GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAK----------LGAEGRKDLFDWLSKQLTGL 1004 (1972)
Q Consensus 936 ~llp~ll~~L~-D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~----------~~~~~R~~~l~~L~~~l~~~ 1004 (1972)
..++.++..+. |.+..||..+..+|..+...-. +..+...+.+.. ....+|..+..-+...
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~---- 176 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL---- 176 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----
Confidence 55677777777 8999999999999987755433 444555555431 0012444444444321
Q ss_pred CCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
.....+.++...+.|...+||.+|..++..+...
T Consensus 177 ----~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 177 ----GDPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred ----CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 1233455578889999999999999999887655
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.23 E-value=12 Score=49.16 Aligned_cols=361 Identities=15% Similarity=0.180 Sum_probs=180.5
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (1972)
.++.+.|.+.+-+.|.+|+..+...+-++.......-.++|+.. | -.| +-.++.|-+.-.++++. .
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvl--p---s~~-~elKKLly~ywE~vPKt---~----- 88 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVL--P---SRN-HELKKLLYYYWELVPKT---D----- 88 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheee--c---cCc-hHHHHHHHHHHHHcccc---C-----
Confidence 35667899999999999999998777665443222222333321 1 111 11222222221222211 0
Q ss_pred HHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 000167 684 LCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1972)
Q Consensus 684 ~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l 763 (1972)
+|.|+... +..+| +++-+- .+|.|-=+|-.++.+|+.+=+. --+.++++.+
T Consensus 89 ----------~dgkl~~E----MILvc---------na~RkD-LQHPNEyiRG~TLRFLckLkE~-----ELlepl~p~I 139 (948)
T KOG1058|consen 89 ----------SDGKLLHE----MILVC---------NAYRKD-LQHPNEYIRGSTLRFLCKLKEP-----ELLEPLMPSI 139 (948)
T ss_pred ----------CCcccHHH----HHHHH---------HHHhhh-ccCchHhhcchhhhhhhhcCcH-----HHhhhhHHHH
Confidence 12222111 11122 222233 3677888888888888776431 1234788888
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHHHhhC------hh-HHhhhh-cccH-HHHHHHHHHHhcCCCCCCCCCCCcccccccc
Q 000167 764 KDTGLQSSAAATRNATIKLLGALHKFVG------PD-IKGFLA-DVKP-ALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (1972)
Q Consensus 764 ~~~gL~~sn~~VR~aA~~ll~~Ly~~~G------~~-l~~~L~-~lkp-~ll~~Le~efek~~~~~~~~p~r~~r~~~~~ 834 (1972)
+.+ |+|.++-||..|+-++.++|+... |. +..||. +..| .....+---|.--+. .+....-+.
T Consensus 140 rac-leHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~E----rAl~Yl~~~--- 211 (948)
T KOG1058|consen 140 RAC-LEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPE----RALNYLLSN--- 211 (948)
T ss_pred HHH-HhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHH----HHHHHHHhh---
Confidence 885 999999999999999999997622 22 345552 2222 112222111100000 000000000
Q ss_pred CCCCCCCCCCCCcc-cccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCC----------CCChhhHH----HH
Q 000167 835 SSVSSGGSDGLPRE-DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ----------PAGTGELF----GG 899 (1972)
Q Consensus 835 ~s~~~~~~d~lprv-dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~----------~~~~~eL~----~~ 899 (1972)
-|.+|.. ++....-=+++.+.--.+-.+|..-++.+-.++...+.... .++ ...+ ..
T Consensus 212 -------idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~Aa~~ 283 (948)
T KOG1058|consen 212 -------IDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKAAAST 283 (948)
T ss_pred -------HhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHHHHHH
Confidence 0000000 00000001222221123333444444444444442111110 001 1111 11
Q ss_pred HHh---ccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHH
Q 000167 900 LRG---RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYV 976 (1972)
Q Consensus 900 L~~---~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l 976 (1972)
+.. ...|.|.++ --+.-|..+. ..-+..+..++..++..|.-..-.||.-+..-.-.++.+-.+..++..+
T Consensus 284 ~i~l~~kesdnnvkl--Ivldrl~~l~----~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~L 357 (948)
T KOG1058|consen 284 YIDLLVKESDNNVKL--IVLDRLSELK----ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFL 357 (948)
T ss_pred HHHHHHhccCcchhh--hhHHHHHHHh----hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHH
Confidence 222 224555433 2333344443 3345667888889999999999999999888888888877777777766
Q ss_pred HHHHhc-CC----CChhHHHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCCHHHHHHH
Q 000167 977 TTALTD-AK----LGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAA 1032 (1972)
Q Consensus 977 ~~~L~~-~~----~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA 1032 (1972)
..-+.. .+ .+-.-|+.++..+..+--+.+ +...-+.| +...+.|.|+.--...
T Consensus 358 kke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp---~~aatvV~~ll~fisD~N~~aas~v 416 (948)
T KOG1058|consen 358 KKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP---EVAATVVSLLLDFISDSNEAAASDV 416 (948)
T ss_pred HHHHHhccccccccchHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHhccCCHHHHHHH
Confidence 655431 10 133447888888876654443 44555555 8888999988543333
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=93.89 E-value=1 Score=48.37 Aligned_cols=98 Identities=15% Similarity=0.310 Sum_probs=76.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||.. +-.+..++.. .+....+.+.+|++||+..|.+++..||.++..+++..|..|...+ +.|+.
T Consensus 14 l~~~dw~~----ileicD~In~-----~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEA----IQAFCEQINK-----EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHH----HHHHHHHHHc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 35668884 3334444432 2333478999999999999999999999999999999999987543 56888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D------~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+++.+.. ....|++-+...+..|....+
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 88888753 457899999999999998875
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.9 Score=49.16 Aligned_cols=98 Identities=20% Similarity=0.364 Sum_probs=77.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (1972)
+...||..=.+ |...+.. . +....+.+.+|++||...|.+++..||.++..+++..|..|... .+.|+.
T Consensus 13 l~~~dw~~il~----icD~I~~---~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGLILD----VCDKVKS---D--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHHHHH----HHHHHhc---C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 34568974333 4444431 1 23348999999999999999999999999999999999998754 456888
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+.+.+.+ ....|++-+...+..|.....
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 88888877 678899999999999998875
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=93.74 E-value=10 Score=45.52 Aligned_cols=187 Identities=11% Similarity=0.140 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc--cchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHH
Q 000167 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (1972)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~--DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~ 943 (1972)
+|..=..++..+..++. . +.+.+....+++..+.+... .--...+....+++..+...-......+...++..+++
T Consensus 53 D~~~~~~~l~gl~~L~~-~-~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 53 DHACVQPALKGLLALVK-M-KNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQ 130 (262)
T ss_pred cHhhHHHHHHHHHHHHh-C-cCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHH
Confidence 44444555667777763 2 44444444566666554332 22334567778888888776555555666778888888
Q ss_pred Hh-CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-------c-CCCCh--hHHHHHHHHHHHHhccCCCCCChhh
Q 000167 944 CL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-------D-AKLGA--EGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1972)
Q Consensus 944 ~L-~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~-------~-~~~~~--~~R~~~l~~L~~~l~~~~~~~~~~~ 1012 (1972)
.. |++.|.----+..-+..++....+..+.+.+.+.+. . +..+| -.|.++-.-|..++...+ .+.+
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~---~fa~ 207 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP---LFAP 207 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH---hhHH
Confidence 76 566666555566666677777777777777776664 1 11112 256777777777776433 4566
Q ss_pred hHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCCh
Q 000167 1013 LLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1057 (1972)
Q Consensus 1013 ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~ 1057 (1972)
.+.| ++..|....+.|+.-+-++|......+|.+.+.++...+=.
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~ 253 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWN 253 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 7777 88899999999999999999999999999999888765533
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=93.73 E-value=2.9 Score=53.22 Aligned_cols=146 Identities=16% Similarity=0.051 Sum_probs=89.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (1972)
+.++..+.+.+...|..++..+... . .+-...|...|+|.+..|+..|+.+++.+.. .
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r------~------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~ 177 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAH------R------HDPGPALEAALTHEDALVRAAALRALGELPR----------R 177 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhh------c------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------c
Confidence 3566777888888998888555431 1 2233566677789999999999999988742 2
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHH
Q 000167 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (1972)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (1972)
..+|.+...+.|.++.||.+|..++..+ |-...++.+....... .+..+..+..++... + ....+.
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~----~----~~~a~~ 243 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA----G----GPDAQA 243 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC----C----chhHHH
Confidence 3455566779999999999998888443 3344444444433322 122344444444311 1 123445
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 1016 PASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
.|...+.|.. ||..+..+++.+
T Consensus 244 ~L~~ll~d~~--vr~~a~~AlG~l 265 (410)
T TIGR02270 244 WLRELLQAAA--TRREALRAVGLV 265 (410)
T ss_pred HHHHHhcChh--hHHHHHHHHHHc
Confidence 5666666654 777777666643
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.2 Score=56.16 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=132.5
Q ss_pred ccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChh
Q 000167 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 929 (1972)
Q Consensus 850 Is~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~ 929 (1972)
+...+-..++.+.++++-++|+..++-+.-+... -+.|....|.-|..-|..|+-|-.+.|+.+|+.++..+-.--+ +
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~-n 165 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL-N 165 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC-C
Confidence 3333444677888999999999999988877753 3555555577788888899999999999999999888753333 3
Q ss_pred hHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--
Q 000167 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-- 1007 (1972)
Q Consensus 930 ~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~-- 1007 (1972)
-+.+...++-.+++ .|....||.+|. ++-.+..- ..|.+.+-..+- +..-|..+...+ ++..+..
T Consensus 166 een~~~n~l~~~vq--nDPS~EVRr~al--lni~vdns----T~p~IlERarDv--~~anRr~vY~r~---Lp~iGd~~~ 232 (885)
T COG5218 166 EENRIVNLLKDIVQ--NDPSDEVRRLAL--LNISVDNS----TYPCILERARDV--SGANRRMVYERC---LPRIGDLKS 232 (885)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHHHH--HHeeeCCC----cchhHHHHhhhh--hHHHHHHHHHHH---hhhhcchhh
Confidence 23444444444443 688889999973 22222222 345555555433 344566555443 4443321
Q ss_pred CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000167 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (1972)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~ 1070 (1972)
......+.-+--.+.|+.-+||+++..++..-...--.-.+...+..|+-+..+.+..+|++.
T Consensus 233 lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~ 295 (885)
T COG5218 233 LSIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGV 295 (885)
T ss_pred ccccceehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHH
Confidence 112223333445899999999999998886544433333455577888877777667777664
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.62 Score=59.15 Aligned_cols=118 Identities=20% Similarity=0.118 Sum_probs=85.0
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH
Q 000167 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (1972)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il 405 (1972)
.+..|...+.|.+..|...+...++.+- -....+.|+..+++..+.|+.++..++...- .+-.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------cChH
Confidence 4778888888888888888877776542 2456677888888999999877765544321 1234
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 000167 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1972)
Q Consensus 406 ~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1972)
+.+...|++.+|.||.+++..|..+=. ...+|.|..++.|.+++||.+|..+++.
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 667777889999999988877765211 3345667788999999999999988843
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.36 Score=63.88 Aligned_cols=146 Identities=17% Similarity=0.139 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhh----hchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000167 323 FTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLR----THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1972)
Q Consensus 323 y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~----~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (1972)
|+++++.|...+. +.-.+ +..+..|+..++ .-.-|....++|-||+.+.-....|+-++..++..+...
T Consensus 865 F~~ivP~l~~~~~t~~~~~K-----~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQK-----HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHhhHHHHHHHhccCCccch-----hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 5566666666554 11111 233334444433 224578889999999999999999999999999887754
Q ss_pred -c---CCChHhHHHHHHHHh-hcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHH
Q 000167 397 -G---CLNLVDVVEDVKTSV-KNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1972)
Q Consensus 397 -~---~~~l~~il~~l~~~l-~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 469 (1972)
. +.+++.++|.++.-- .++| -.||..+++.|..+.+..|...+..+-+.++.++.++|+|...-||..|..+=
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1 245677888887533 3554 57999999999988777888888888899999999999999999999998875
Q ss_pred HHHH
Q 000167 470 AAIA 473 (1972)
Q Consensus 470 ~~l~ 473 (1972)
....
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 5443
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.18 E-value=2.4 Score=56.82 Aligned_cols=167 Identities=14% Similarity=0.158 Sum_probs=112.0
Q ss_pred hccCChHHHHHHHHHHHH-HhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHH
Q 000167 294 VKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~-l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (1972)
+.+++=++|++|++.+.+ +..+. |...++.-+.|-+.--|.-+....---+...++. -...+...++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~-----dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~----~P~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE-----DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKL----KPELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHH
Confidence 677788899999998765 44433 3566666555555544544444333333333322 1245778899999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-HHHHHH
Q 000167 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 451 (1972)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~p~l~ 451 (1972)
+-++|+++.+|-.|..++..+=.. -=++.+++.|..++.|+++.||..++-.+..+++.- +.. +... .+..+.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-~~l---~~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-KDL---YHELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-Hhh---hhcccHHHHHH
Confidence 999999999998776665543221 113445667778888999999999999998887642 211 2233 566677
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHH
Q 000167 452 ECLNDGTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 452 k~l~Ds~~~VR~aA~~~l~~l~~~ 475 (1972)
..+.|++|.|-..|..+|..+..-
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchh
Confidence 888999999988888888766543
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.97 E-value=23 Score=46.34 Aligned_cols=291 Identities=18% Similarity=0.168 Sum_probs=168.0
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCCChh
Q 000167 106 RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQN 183 (1972)
Q Consensus 106 k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~--~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~ 183 (1972)
++.-.-.|..|+-.+=+.+-.+.+.+.+-+-+- .--+=|+..+..+|-.+++.+ +..+++......+..+|+|.+=+
T Consensus 124 n~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s-pDl~~~~~W~~riv~LL~D~~~g 202 (938)
T KOG1077|consen 124 NPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS-PDLVNPGEWAQRIVHLLDDQHMG 202 (938)
T ss_pred CcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC-ccccChhhHHHHHHHHhCccccc
Confidence 444455666665554444444444444443332 122334445555666666663 34667778888899999999999
Q ss_pred HHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCC---------CCC---CcchhhhhhHhhhhhccc
Q 000167 184 VRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT---------ARP---TRKIRAEQDKELGQELIS 251 (1972)
Q Consensus 184 VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~---------~~P---~R~~rs~~~~~~~~~a~~ 251 (1972)
|-.++.+++..|.++..+. .+. --+-++..|..-.-...-+ +.| +..+|--+.-
T Consensus 203 v~ta~~sLi~~lvk~~p~~-yk~-----~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-------- 268 (938)
T KOG1077|consen 203 VVTAATSLIEALVKKNPES-YKT-----CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-------- 268 (938)
T ss_pred eeeehHHHHHHHHHcCCHH-Hhh-----hHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC--------
Confidence 9999999998888887653 222 2233344443322111100 111 0011111110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCc----ccccccCcccchhhhhccCChHHHHH---HHHHHHHHhcCCCCCCCChH
Q 000167 252 EDVGPGPSEESTADVPPEIDEYELVDP----VDILTPLEKSGFWEGVKATKWSERKD---AVAELTKLASTKRIAPGDFT 324 (1972)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~iD~~dl~~~----vdIl~kl~~~~f~~~l~s~kWkeR~e---aL~~L~~l~~~~ki~~~~y~ 324 (1972)
+.. -|+-...-- ..||+|.. +--.++|-+.+-. .|-+...++.+-.-.+.-+.
T Consensus 269 ------p~~---------~D~~~r~~l~evl~~iLnk~~-----~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~ 328 (938)
T KOG1077|consen 269 ------PTP---------EDPSTRARLNEVLERILNKAQ-----EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS 328 (938)
T ss_pred ------CCC---------CCchHHHHHHHHHHHHHhccc-----cCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH
Confidence 000 000000000 12233221 1113455554432 22233334433333334567
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchh-hhhhhHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCChH
Q 000167 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLV 402 (1972)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klk-dkk~~V~~aa~~aL~al~~~~~~~l~ 402 (1972)
.-+..|.+.|.+...+++..|+..+..|+.. .|. ..++.-.-.++..++ |+...||.-+...|-+++.. ....
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak 403 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAK 403 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hhHH
Confidence 7778888888866666888887777777654 333 224445777888898 99999999998988888875 6778
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000167 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1972)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (1972)
.|+++++..+.+-.+++|++...=++.+.++...
T Consensus 404 ~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 404 QIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988777776666544
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.82 E-value=4.2 Score=48.41 Aligned_cols=302 Identities=16% Similarity=0.137 Sum_probs=166.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHH-ccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~-a~~~I~~~~~~eL~~~L~~~L-~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
|.+.+.+-+.+-.....|..+++++++. .++.|++-.-..+++-|...+ ...+..+.-+|.=+|..++.+....-+-.
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 4566777777888889999999999973 455666543234455555555 34455566677777778876543221111
Q ss_pred h-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-Cc------hhhHHHHHHHHhcCCCChhHH-HHHHHHHHHHhccC
Q 000167 934 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HL------DKMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGL 1004 (1972)
Q Consensus 934 ~-~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~-~l------~~ll~~l~~~L~~~~~~~~~R-~~~l~~L~~~l~~~ 1004 (1972)
+ -.-+|.+++.|.+....||+.+.=||..++.-. +. ...++.++..|.+.. +.+. ..-..|....+..-
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCC
Confidence 1 135789999999999999999999988776432 11 113444555555432 2111 33455655444332
Q ss_pred CC-CCCh---hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCC
Q 000167 1005 SG-FPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (1972)
Q Consensus 1005 ~~-~~~~---~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~ 1080 (1972)
.. .+++ ...++.+.+.+.-.+++|-.-|.=++..+.. ...+.+... |+......+.+.+-....
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD-g~~E~i~av---ld~g~~~RLvElLs~~sa-------- 299 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD-GPNEKIQAV---LDVGIPGRLVELLSHESA-------- 299 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc-CcHHHHHHH---HhcCCcHHHHHHhcCccc--------
Confidence 22 3333 3334447778888889887776655544432 112222211 111111223333211100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcccccchhhhhhhhc---------cccCCCChHHhhhhhccccc
Q 000167 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL---------LNVKDSNKEDRERMVVRRFK 1151 (1972)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~k~~R~~~~~~k~~ 1151 (1972)
+ +.++..|+. +.+.+ +.+.+++.+ +.+..+.| +++|+.. =|.
T Consensus 300 -~------------iqtPalR~v--GNIVT------------G~D~QTqviI~~G~L~a~~~lLs~~k-e~irKEa-CWT 350 (526)
T COG5064 300 -K------------IQTPALRSV--GNIVT------------GSDDQTQVIINCGALKAFRSLLSSPK-ENIRKEA-CWT 350 (526)
T ss_pred -c------------ccCHHHHhh--cCeee------------cCccceehheecccHHHHHHHhcChh-hhhhhhh-hee
Confidence 0 011111110 00000 111222222 12223333 3554332 376
Q ss_pred ccCCChhhHHHHHHHHHHhhhHHHHHhhcCccHHHHHHHHHHHHHhcCc
Q 000167 1152 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200 (1972)
Q Consensus 1152 f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~~~al~~L~~~l~~ 1200 (1972)
...-+.-.+|+.+.-|..-+-+-|+.+|-+.||+-+.+|.=.+......
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6655556677888888888888899999999999999988777766443
|
|
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.78 Score=49.51 Aligned_cols=106 Identities=29% Similarity=0.532 Sum_probs=75.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (1972)
+.+.||.. +-.|.+.+.. . +..-.+.+.+|+++|...|.+++..||.++..++...|..|... .+.|+.
T Consensus 18 ~~~~Dw~~----~l~icD~i~~---~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~ 88 (140)
T PF00790_consen 18 LPSPDWSL----ILEICDLINS---S--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLD 88 (140)
T ss_dssp SSS--HHH----HHHHHHHHHT---S--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHc---C--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHH
Confidence 45568863 2334445442 2 33348999999999999999999999999999999999998754 345777
Q ss_pred HHHHHhCCCcH--H--HHHHHHHHHHHHHHhcCchhhHHHH
Q 000167 940 DILKCLGDNKK--H--MRECTLTVLDAWLAAVHLDKMVPYV 976 (1972)
Q Consensus 940 ~ll~~L~D~k~--~--Vr~Aa~~aL~~i~~~~~l~~ll~~l 976 (1972)
.+...+.++.. . |++.+...+..|....+-..-++.+
T Consensus 89 ~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i 129 (140)
T PF00790_consen 89 ELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLI 129 (140)
T ss_dssp HHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHH
T ss_pred HHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHH
Confidence 77776654333 2 8999999999999998543333333
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.47 E-value=34 Score=46.74 Aligned_cols=86 Identities=12% Similarity=0.039 Sum_probs=59.1
Q ss_pred hhccCChHHHHHHHHHHHH---Hh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhch-hhhhhhH
Q 000167 293 GVKATKWSERKDAVAELTK---LA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF-SGSSRFL 367 (1972)
Q Consensus 293 ~l~s~kWkeR~eaL~~L~~---l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f-~~~~~~l 367 (1972)
-+++++-..|.+||+-+.- ++ ..+...-...+...+.+..++.+.|.-++..|+.||..++..-|.=. .++.+.+
T Consensus 811 ~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dv 890 (1014)
T KOG4524|consen 811 LLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDV 890 (1014)
T ss_pred HhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3688999999999998754 22 33322212234445666778889999999999999999998665322 2566777
Q ss_pred HHHHHHHhccC
Q 000167 368 LPVLLEKLKEK 378 (1972)
Q Consensus 368 lp~LL~klkdk 378 (1972)
+|.+=..|.+.
T Consensus 891 lP~l~~~~~~~ 901 (1014)
T KOG4524|consen 891 LPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHH
Confidence 77766555553
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.25 Score=38.41 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~ 967 (1972)
++|.+++.+.|..+.||.+|..|+..+++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999998764
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.7 Score=46.50 Aligned_cols=98 Identities=21% Similarity=0.417 Sum_probs=74.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||..=.+ +..++.. . +..-.+.+.+|+++|...|.+++..||.++..++...|..|...+ +.|+.
T Consensus 13 l~~~dw~~~l~----icD~i~~---~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWELILE----ICDLINS---T--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHHHHHH----HHHHHhC---C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 45668884333 4444431 2 233488999999999999999999999999999999999987543 45777
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGDNKK--HMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D~k~--~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+...+.++.. .|++.+...+..|.....
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 77776665432 399999999999998874
|
Unpublished observations. Domain of unknown function. |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.12 E-value=36 Score=44.89 Aligned_cols=198 Identities=15% Similarity=0.120 Sum_probs=118.4
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCCcc--C-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChH
Q 000167 138 KNKVAKAVVPAIDVMFQALSEFGAKII--P-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRD 214 (1972)
Q Consensus 138 ~~KnpKv~~~~l~~l~~~l~~fG~~~~--~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~ 214 (1972)
-.|++-+..-.+..+..++..|...-. . +.+++.++....+..|++||-....++.-+.-..+. +-+.
T Consensus 52 vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e--idd~------- 122 (892)
T KOG2025|consen 52 VKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE--IDDD------- 122 (892)
T ss_pred eccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc--cCHH-------
Confidence 367777777777777777776654221 1 467889999999999999998876665444332221 1122
Q ss_pred HHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhh
Q 000167 215 TMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV 294 (1972)
Q Consensus 215 ~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l 294 (1972)
+++++. ..+...+
T Consensus 123 ------------------------------------------------------------------vfn~l~-e~l~~Rl 135 (892)
T KOG2025|consen 123 ------------------------------------------------------------------VFNKLN-EKLLIRL 135 (892)
T ss_pred ------------------------------------------------------------------HHHHHH-HHHHHHH
Confidence 233332 2344444
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 000167 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~ 373 (1972)
.|..-..|.+|+..|..+-..++ .+=-+++..++..|. |++.-|++.|+-+|.. -...+|-+++
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~~---dee~~v~n~l~~liqnDpS~EVRRaaLsnI~v------------dnsTlp~Ive 200 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDPK---DEECPVVNLLKDLIQNDPSDEVRRAALSNISV------------DNSTLPCIVE 200 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhhcc------------CcccchhHHH
Confidence 55555568888888877754322 122357788888887 9999999998887743 2346788899
Q ss_pred HhccCcHHHHHHHHH-HHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHH
Q 000167 374 KLKEKKPTVAESLTQ-TLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1972)
Q Consensus 374 klkdkk~~V~~aa~~-aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L 427 (1972)
+.+|=+..+|.-+-+ ++..+ ..-..+.+.-+-.+--|+.++.-.+|.++...+
T Consensus 201 RarDV~~anRrlvY~r~lpki-d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 201 RARDVSGANRRLVYERCLPKI-DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred HhhhhhHHHHHHHHHHhhhhh-hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 998888777653322 22222 110123333333333456555555555554443
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.67 E-value=4.6 Score=52.32 Aligned_cols=184 Identities=20% Similarity=0.237 Sum_probs=119.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 000167 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (1972)
Q Consensus 767 gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lp 846 (1972)
||+..|.+||..|..++..+|-..|++...- ..=..+++.|+
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e------~mD~i~~kQf~-------------------------------- 223 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHAE------EMDSIIQKQFE-------------------------------- 223 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccHH------HHHHHHHHHHH--------------------------------
Confidence 5999999999999999999998888875310 11112222222
Q ss_pred cccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHH
Q 000167 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASA 925 (1972)
Q Consensus 847 rvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L-~DsN~~V~~~Al~~l~~La~a 925 (1972)
.+++.++|.--.+|-+|++.+.++...-=.-|.++...+++.-+.+-+ .|+-..|+....+.|..|+-
T Consensus 224 ----------~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~- 292 (1005)
T KOG1949|consen 224 ----------ELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD- 292 (1005)
T ss_pred ----------HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-
Confidence 344455666667899999999888864322334444455555555444 57777888888888887753
Q ss_pred cChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--cCchhhHH--HHHHHHhcCCCChhHHHHHHHHHHHHh
Q 000167 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1972)
Q Consensus 926 lg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~--~~l~~ll~--~l~~~L~~~~~~~~~R~~~l~~L~~~l 1001 (1972)
.+...+.++.++|.+=-.+.|+...||-|+...|-.+-.+ ...-.+++ .+...|...+ .+..|.-+.-.+..+|
T Consensus 293 -np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~-~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 293 -NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDS-RPVSRRLVSLIFNSFL 370 (1005)
T ss_pred -CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccc-cHHHHHHHHHHHHhhc
Confidence 3445577888999888999999999999998888766443 23333333 4555665443 2434433333333343
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.51 E-value=52 Score=42.29 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHh--hhch-hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH---HHHHHHhhcCCh
Q 000167 344 EAIQAIGNLARGL--RTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVKNKVP 417 (1972)
Q Consensus 344 ~A~~~l~~La~~L--~~~f-~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il---~~l~~~l~~Knp 417 (1972)
.|-.+|..|+..+ |+.| +..+..++=++++.|..|....|++.--|+..+-.. + ++++ ..|+.-++++.|
T Consensus 40 ~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~---t-edvlm~tssiMkD~~~g~~ 115 (898)
T COG5240 40 SARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKL---T-EDVLMGTSSIMKDLNGGVP 115 (898)
T ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhc---c-hhhhHHHHHHHHhhccCCc
Confidence 3445666666655 5678 678999999999999999999999999999888653 2 2322 344455567777
Q ss_pred -HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHH
Q 000167 418 -LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (1972)
Q Consensus 418 -~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 466 (1972)
.+|-.++.-|.+++..... ..+-..+..+.-|+.+.+|.+|.
T Consensus 116 ~~~kp~AiRsL~~Vid~~tv-------~~~er~l~~a~Vs~~~a~~saal 158 (898)
T COG5240 116 DDVKPMAIRSLFSVIDGETV-------YDFERYLNQAFVSTSMARRSAAL 158 (898)
T ss_pred cccccHHHHHHHHhcCcchh-------hhHHHHhhhhccccchhhhhhHH
Confidence 7888888888777764332 33445577888999999998874
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=91.37 E-value=2.2 Score=52.32 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhchhhhh--hhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--hhhHHHHHHHHhhcCChhhH
Q 000167 71 KALDALIAYLKAADADAGR--YAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAV 145 (1972)
Q Consensus 71 ~~leal~~~v~~~~~~~~~--~~~~v~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~--~~~v~~~L~~~~~~KnpKv~ 145 (1972)
+.|..+...+++...+... ....++..||-.++. ..+.+|+.|+.|+=.++=++. ....+..+...+..-.+.++
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 3566667777776533332 235788888888776 578999999999888876543 34556666777766688999
Q ss_pred HHHHHHHHHHHHHhCCCccCh----------hHHHHhhhhhhcCCChhHHHHHHHHHHHHH
Q 000167 146 VPAIDVMFQALSEFGAKIIPP----------KRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1972)
Q Consensus 146 ~~~l~~l~~~l~~fG~~~~~~----------k~il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (1972)
..|+.++.+++-.||...+.- ..+++.+.+.+.+.++.||..|...+..|+
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999999876532 358999999999999999999988887776
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=91.01 E-value=3 Score=46.56 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=85.0
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCC----hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC--hhH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLN----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KAA 438 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~~----l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~--~~~ 438 (1972)
.++|.+++-+.|++..-+--|...+..++.. +... +.+++.-|..+|+++++.+...++..|..++...+ ...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 5677777888888777776666777777665 1111 34566666789999999999999999998865543 235
Q ss_pred HHHhhhhHHHHHHHHh--c---------CCChHHHHHHHHHHHHHHHHhCchhH
Q 000167 439 VLKVHKDYVPICMECL--N---------DGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1972)
Q Consensus 439 l~~~l~~l~p~l~k~l--~---------Ds~~~VR~aA~~~l~~l~~~~ge~~~ 481 (1972)
+.+++++++|.+--.. + .....+++--.++|..+-+.-|++++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 6788888888887322 2 35678999999999999988887654
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.92 E-value=67 Score=42.46 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=82.4
Q ss_pred ChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCch
Q 000167 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLD 970 (1972)
Q Consensus 892 ~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~-D~k~~Vr~Aa~~aL~~i~~~~~l~ 970 (1972)
.+..-+..|.+.|.+...+++-.|++.+..|+.. +... ..++.-.-.++..|+ +..-.||+-|..-|-+|+..-..+
T Consensus 326 ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~-davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak 403 (938)
T KOG1077|consen 326 LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSI-DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK 403 (938)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchH-HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH
Confidence 3455666777777887788888888888888766 2222 233444677888888 888999999999999999998889
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000167 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1972)
Q Consensus 971 ~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1972)
.++..+...|.+. .+..|.++.--++-.-++..+
T Consensus 404 ~IV~elLqYL~tA--d~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 404 QIVAELLQYLETA--DYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhcC
Confidence 9999999999876 578898876555443344333
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=90.91 E-value=2 Score=45.94 Aligned_cols=100 Identities=21% Similarity=0.361 Sum_probs=76.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh-hh-hHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SK-GVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~-~llp 939 (1972)
+.+.||.. +-+|..++.. . +..-.+.+.+|+++|+..|.+++..||.++..++...|..|... .. .++-
T Consensus 13 ~~~~D~~~----il~icd~I~~--~---~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWAL----NLELCDLINL--K---PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHHH----HHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 35568884 3335555532 1 33348999999999999999999999999999999999988654 33 5777
Q ss_pred HHHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000167 940 DILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (1972)
Q Consensus 940 ~ll~~L~D---~k~~Vr~Aa~~aL~~i~~~~~l~ 970 (1972)
.+++.+.. ....|+.-+...+..|....+-.
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777765 46679999999999999987643
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.88 E-value=45 Score=47.95 Aligned_cols=236 Identities=16% Similarity=0.141 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchh------hhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHH
Q 000167 663 VIEVINYLAATATKFPKKCVVLCLLGISERVADIK------TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 736 (1972)
Q Consensus 663 ~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K------~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~ 736 (1972)
.++++..++....... ..+|..|+.+++.+. -+..|.+++..++.+..+. +.+.+...+...++ . ..
T Consensus 164 ~~~i~~~li~e~d~v~----~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~-i~~f~~~~~~~~~s-~-~~ 236 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDTVQ----SELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDT-IANFLNSCLTEYKS-R-QS 236 (1266)
T ss_pred HHHHHHHHHHhhccch----HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchh-HHHHHHHHHhhccc-c-cc
Confidence 6666666665432222 345555566665542 2455555555555554432 22223232221111 1 11
Q ss_pred HHHHHHHHHHHHhCCCC-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhc
Q 000167 737 EGILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (1972)
Q Consensus 737 e~l~~L~~~i~~fG~~~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek 815 (1972)
-.-.-.+++|-+...-. --+-.+++.+..- |.+.+-.+|-.|..++|.|+...+.-+. + .
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l~----~--------------~ 297 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQLS----E--------------T 297 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhhc----c--------------c
Confidence 11112233333221100 0133577777765 8899999999999999999854432110 0 0
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhh
Q 000167 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895 (1972)
Q Consensus 816 ~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~e 895 (1972)
..-+-..|+..+.|..-.+|.+.++....++.. ++.+... ..
T Consensus 298 -----------------------------------~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~~--~~ 339 (1266)
T KOG1525|consen 298 -----------------------------------YDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAKA--ST 339 (1266)
T ss_pred -----------------------------------chHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-CchhhhH--HH
Confidence 001345788889999999999999998888763 2222221 34
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000167 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1972)
Q Consensus 896 L~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~ 966 (1972)
+..+|+.+.-|.+..++...+.....+ +.-.+ .+...++-.+.+.+.|++..||..|+..|..+.++
T Consensus 340 ~~~~l~~~~~D~~~rir~~v~i~~~~v---~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 340 ILLALRERDLDEDVRVRTQVVIVACDV---MKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHhhcCChhhhheeeEEEEEeeh---hHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 566777777777766654432221111 11111 23333777788899999999999999999999986
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=90.85 E-value=1.1 Score=59.46 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=111.0
Q ss_pred cccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHcccc-CCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChh
Q 000167 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 929 (1972)
Q Consensus 851 s~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~-I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~ 929 (1972)
+..+.|.+.+.+....-.+|-.=+..+.-++..-.+. +.|. +..|++.|.+.|+=....|+..+++++..+....+.-
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~-~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQ-FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccc-hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 4445566666666555555656666777777632222 3344 5889999999987777778889999999999999988
Q ss_pred hHhhhhhHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000167 930 VEKSSKGVLSDILKCLGDNK---KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1972)
Q Consensus 930 ~~~~~~~llp~ll~~L~D~k---~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1972)
...|+..++|.++..-.|++ ..||..|.+||+++.+.++...+++.
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f------------------------------- 992 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF------------------------------- 992 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc-------------------------------
Confidence 99999999999999888777 67999999999998877664333221
Q ss_pred CCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 1007 FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 1007 ~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
-...+..+.++|+|+..-||+.|..+=...
T Consensus 993 ---r~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 993 ---RPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred ---cHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 012344466778888888888887664443
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=90.78 E-value=3.7 Score=44.44 Aligned_cols=100 Identities=20% Similarity=0.359 Sum_probs=75.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (1972)
+.+.+|..=.+ +..++.. . +....+.+.+|++||...|.+++..||.++..+++..|..|... .+.|+.
T Consensus 17 l~~~dw~~ile----icD~In~--~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~ 87 (142)
T cd03569 17 LGEPDLASILE----ICDMIRS--K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD 87 (142)
T ss_pred cCccCHHHHHH----HHHHHhC--C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 35568874333 4444432 1 22248999999999999999999999999999999999988753 345777
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcCch
Q 000167 940 DILKCLG-DNKKHMRECTLTVLDAWLAAVHLD 970 (1972)
Q Consensus 940 ~ll~~L~-D~k~~Vr~Aa~~aL~~i~~~~~l~ 970 (1972)
.+...+. ...+.|++-+...+..|.....-+
T Consensus 88 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 88 ELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 7777665 456679999999999999887643
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.41 E-value=6.9 Score=47.78 Aligned_cols=175 Identities=20% Similarity=0.235 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHH---ccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh-hHH
Q 000167 863 ESPDWKVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK-GVL 938 (1972)
Q Consensus 863 ~d~~Wk~R~eale~l~~ll~~---a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~-~ll 938 (1972)
.+.+-..|..|++.++.++.. |+..+. +|-+...|. .+++++..++..|..+|+..+..-.+.-+...+ ..+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~---~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS---LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh---ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 344677889999999999874 222222 244555555 889999999999999999988654443333333 267
Q ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHHHHhc--CchhhHH-----HHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCC-
Q 000167 939 SDILKCLG-DNKKHMRECTLTVLDAWLAAV--HLDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD- 1009 (1972)
Q Consensus 939 p~ll~~L~-D~k~~Vr~Aa~~aL~~i~~~~--~l~~ll~-----~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~- 1009 (1972)
+.++..|. |..-.+|..|.-|+..++++- |...+++ .|.++|+++..+...+.-++..+..++.......+
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 78887776 444568899999999999885 3455554 57888887534567777788888777766544222
Q ss_pred hhhhHHH--HHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 1010 AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1010 ~~~ll~p--l~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
......+ +.....--+.+++.++..++-.+..
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 1122222 1222223344566666555444433
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=90.25 E-value=2.1 Score=48.10 Aligned_cols=133 Identities=21% Similarity=0.228 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHc-ChhhHhhhhhHHHHH-----------H-HHhCCCcHHHHHHHHHHHHHHHHhcC--------
Q 000167 910 NLVMATLITLGAVASAM-GPAVEKSSKGVLSDI-----------L-KCLGDNKKHMRECTLTVLDAWLAAVH-------- 968 (1972)
Q Consensus 910 ~V~~~Al~~l~~La~al-g~~~~~~~~~llp~l-----------l-~~L~D~k~~Vr~Aa~~aL~~i~~~~~-------- 968 (1972)
+|+..|+.+++.+++.. ++.|-.|-..|+|.- + -.+.|..+-||.+|..++.++.+...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 47889999999999995 556788888888755 3 34579999999999999999987642
Q ss_pred --------------chhhHH----HHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCCh-hhhHHHHHhhcCCCCH
Q 000167 969 --------------LDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDA-AHLLKPASIAMTDKSS 1026 (1972)
Q Consensus 969 --------------l~~ll~----~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~~~~-~~ll~pl~~~L~D~~~ 1026 (1972)
+..++- .+..+|+.++ ++..-..+++-+...++..+- ..++ ...+..+...+.+++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 111111 2444555443 455666778888777776654 2333 3344446667788999
Q ss_pred HHHHHHHHHHHHHHHHc
Q 000167 1027 DVRKAAEACIVEILRAG 1043 (1972)
Q Consensus 1027 dVR~aA~~~l~~l~~~~ 1043 (1972)
+||-++.-||+.+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999999887543
|
|
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=89.99 E-value=3.7 Score=44.35 Aligned_cols=100 Identities=26% Similarity=0.436 Sum_probs=73.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~-DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~ll 938 (1972)
+...||..=.+ |...+.. ......+.+.+|++||. ..|.+++..||.++..+++..|..|...+ +.|+
T Consensus 14 l~~~dw~~ile----icD~In~-----~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNME----ICDIINE-----TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHHH----HHHHHhC-----CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 45568985433 3334431 22234889999999997 46899999999999999999999987543 4677
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000167 939 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (1972)
Q Consensus 939 p~-ll~~L~D---~k~~Vr~Aa~~aL~~i~~~~~l~ 970 (1972)
.. +++.+.+ ....|++-+...+..|.....-+
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 76 6666653 33479999999999999887533
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=89.93 E-value=2.5 Score=43.89 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh--HHHHHHH-----H
Q 000167 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILK-----C 944 (1972)
Q Consensus 872 eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~-----~ 944 (1972)
..+..|..++.+ .+..+.+++.+|.+||.+.|..++..||.++..++...|..|..++.. ++-.++. .
T Consensus 19 ~~i~~i~d~~~~-----~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~ 93 (115)
T cd00197 19 PLIMEICDLINE-----TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKL 93 (115)
T ss_pred HHHHHHHHHHHC-----CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccc
Confidence 345555555532 133468999999999999999999999999999999999998876533 3333322 1
Q ss_pred h-CCCcHHHHHHHHHHHHHHH
Q 000167 945 L-GDNKKHMRECTLTVLDAWL 964 (1972)
Q Consensus 945 L-~D~k~~Vr~Aa~~aL~~i~ 964 (1972)
. .+....||+.+...+..|.
T Consensus 94 ~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 94 LGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred ccCCCChHHHHHHHHHHHHHh
Confidence 1 2456789999999998885
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.89 E-value=5.5 Score=53.54 Aligned_cols=168 Identities=18% Similarity=0.130 Sum_probs=100.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHH-HHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~-~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (1972)
+.+++-+.|.+|+..+-..+..+ +++..++. .++... --|..+....--.+-..++. .+ .-+...+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G------~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~-~P---~~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG------EDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKL-KP---ELALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhcc-CH---HHHHHHHHH
Confidence 67788889999999877666532 22344443 333333 33444444332222222221 11 445667789
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhh
Q 000167 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020 (1972)
Q Consensus 941 ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~ 1020 (1972)
+.+-++|.++.+|..|..++..+-..-=++.+++.+...+.++ ++.+|.++.-.+...+.--+..-.-.-.+..+...
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l 174 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLDKDLYHELGLIDILKEL 174 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHH
Confidence 9999999999999999888876522111233444555556666 68999998888887764322110000022223445
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 000167 1021 MTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 1021 L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
+.|.++.|-.+|..+|..+..-
T Consensus 175 ~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 175 VADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhCCCchHHHHHHHHHHHhchh
Confidence 6799999999998888777643
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=89.86 E-value=81 Score=41.72 Aligned_cols=96 Identities=17% Similarity=0.269 Sum_probs=73.7
Q ss_pred hhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhc-C-ChHHHHHHHHHHHHHHH
Q 000167 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKN-K-VPLVRSLTLNWVTFCIE 432 (1972)
Q Consensus 357 ~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~l~~-K-np~vR~~~l~~L~~~l~ 432 (1972)
...|++....++|++|.++......||..+.+.+..+... +...+.-=++.|+...++ . ++.+|..++.|+...+.
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 3568889999999999999999999999999999887755 112233334566665554 3 59999999999999999
Q ss_pred hcChhHHHHhhhhHHHHHHHHhcC
Q 000167 433 TSSKAAVLKVHKDYVPICMECLND 456 (1972)
Q Consensus 433 ~~~~~~l~~~l~~l~p~l~k~l~D 456 (1972)
+.+...- ..++|.+++++..
T Consensus 94 Rl~~~e~----~~llP~ll~~is~ 113 (501)
T PF13001_consen 94 RLDDEER----RELLPSLLKGISK 113 (501)
T ss_pred cCCHHHH----HHHHHHHHHhhcc
Confidence 8876554 5677888888753
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.85 E-value=19 Score=48.35 Aligned_cols=237 Identities=17% Similarity=0.181 Sum_probs=139.4
Q ss_pred HHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCC-CCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhh
Q 000167 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 797 (1972)
Q Consensus 719 l~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~-~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~ 797 (1972)
++..+..+ .++-+-++..++..|..+++.-.. ..+....++..+.+. +.|.|+-|=-.|++.++.|...+..++
T Consensus 729 ~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lcevy~e~i--- 803 (982)
T KOG4653|consen 729 LQEAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCEVYPEDI--- 803 (982)
T ss_pred HHHHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHHhcchhh---
Confidence 44444443 456677889999999999984322 123445678888888 999999999999996666654443332
Q ss_pred hhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHH
Q 000167 798 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAV 877 (1972)
Q Consensus 798 L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l 877 (1972)
-|.+.+..+.+-.+.+ + |. +. ++. |.+
T Consensus 804 ----l~dL~e~Y~s~k~k~~----~--------------------d~-----~l-kVG-------------------Eai 830 (982)
T KOG4653|consen 804 ----LPDLSEEYLSEKKKLQ----T--------------------DY-----RL-KVG-------------------EAI 830 (982)
T ss_pred ----HHHHHHHHHhcccCCC----c--------------------cc-----ee-hHH-------------------HHH
Confidence 2223332222211110 0 00 00 011 223
Q ss_pred HHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHh-CCCcHHHHHHH
Q 000167 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECT 956 (1972)
Q Consensus 878 ~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L-~D~k~~Vr~Aa 956 (1972)
.+++..- ..+....++-|...+...+.|+....+..++..+|.++..+.-....++..++..++... .|....||.||
T Consensus 831 ~k~~qa~-Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaA 909 (982)
T KOG4653|consen 831 LKVAQAL-GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAA 909 (982)
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHH
Confidence 3333211 112222235566667677778888889999999999998776444445556666665543 58889999999
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000167 957 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (1972)
Q Consensus 957 ~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l 1036 (1972)
...+......+| ..++|.+-..+.+. . ..+.+ + .-.|++..+|..|+.|+
T Consensus 910 v~li~~lL~~tg-~dlLpilr~~l~Dl-------------~--------------~tl~~-~-vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 910 VHLLAELLNGTG-EDLLPILRLLLIDL-------------D--------------ETLLS-Y-VRQHDDDGLKLHAQLCL 959 (982)
T ss_pred HHHHHHHHhccc-hhhHHHHHHHHHHH-------------H--------------HHHHH-H-HhcCchhHHHHHHHHHH
Confidence 999988888877 33444433333321 0 01111 1 11455666889999999
Q ss_pred HHHHHHcC
Q 000167 1037 VEILRAGG 1044 (1972)
Q Consensus 1037 ~~l~~~~G 1044 (1972)
..+-..+.
T Consensus 960 eei~a~l~ 967 (982)
T KOG4653|consen 960 EEIQAALE 967 (982)
T ss_pred HHHHHHHH
Confidence 87765443
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=89.28 E-value=27 Score=47.46 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=74.9
Q ss_pred HHHHHHHHHHc--ChhhHhhhh--hHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC
Q 000167 916 LITLGAVASAM--GPAVEKSSK--GVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA 983 (1972)
Q Consensus 916 l~~l~~La~al--g~~~~~~~~--~llp~ll~~L~D~k--~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~ 983 (1972)
++|+|.|+.-- +.++...+. .++|-+.+.|.... ..+.-.+...+.+++..-. -..+++.+.+.|..+
T Consensus 509 vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 509 VECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred HHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhh
Confidence 34444444422 446777765 58888888886532 3455555556665553211 134667777888754
Q ss_pred CCChhHHHHHHHHHHHHhccCCCCCCh---hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Q 000167 984 KLGAEGRKDLFDWLSKQLTGLSGFPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1972)
Q Consensus 984 ~~~~~~R~~~l~~L~~~l~~~~~~~~~---~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~ 1043 (1972)
..+-+.-..++-.+.+++.+-.+...+ .+...-++..++|+|.+||+.|-.||..++.+=
T Consensus 589 qeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 589 QEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred CchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 333333344444444444432221111 223334888999999999999999999888753
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=89.05 E-value=5.3 Score=48.96 Aligned_cols=125 Identities=15% Similarity=0.096 Sum_probs=90.9
Q ss_pred HHHHHHhhhchhhh--hhhHHHHHH-HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHH
Q 000167 350 GNLARGLRTHFSGS--SRFLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (1972)
Q Consensus 350 ~~La~~L~~~f~~~--~~~llp~LL-~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~ 426 (1972)
..+-+.....+.+. ...++..++ -.+....+.||+.+..||.-+.-.........++.+...++.....+|..+++.
T Consensus 8 ~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~ 87 (298)
T PF12719_consen 8 QSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKA 87 (298)
T ss_pred HHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33333333344443 336666655 445777789999999999877654112234566777777777789999999999
Q ss_pred HHHHHHhcChhHHHHh--------hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 427 VTFCIETSSKAAVLKV--------HKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 427 L~~~l~~~~~~~l~~~--------l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
+..++-.++...+... ...+...+.+.+.+.++++|..|.+++..+.-
T Consensus 88 l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 88 LFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999998876554322 25788899999999999999999999998774
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=89.02 E-value=2.8 Score=46.37 Aligned_cols=146 Identities=12% Similarity=0.179 Sum_probs=91.7
Q ss_pred CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHH--hc
Q 000167 321 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK--AG 397 (1972)
Q Consensus 321 ~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~--~~ 397 (1972)
.+|.+|++.|...++ +.+..++.++++++|.|+. .+||....+..-.. +.. ..+....+.+.... ..
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~---~~~--~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGA-----LDPYKHKSIQKSLD---SKS--SENSNDESTDISLPMMGI 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-----cCcHHHhcccccCC---ccc--cccccccchhhHHhhccC
Confidence 468999999999998 7778999999999998863 45554332211111 110 01111111111111 10
Q ss_pred CCChHhH-----HHHHHHHhhcCC-hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 000167 398 CLNLVDV-----VEDVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1972)
Q Consensus 398 ~~~l~~i-----l~~l~~~l~~Kn-p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1972)
..+.++. +..+..-|++++ ..-...++..+..++...+... .++++.++|.+...+....+..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1123333 344445555544 4455567777777776655544 57789999999999999999999998888888
Q ss_pred HHHHhC
Q 000167 472 IAKSVG 477 (1972)
Q Consensus 472 l~~~~g 477 (1972)
+...++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 877653
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=88.88 E-value=1.9 Score=46.63 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=64.9
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCc---cChhHHHHhhhhhhc-CCChhHHHHHHHHHHHHHHhhC
Q 000167 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFD-HQDQNVRASSKGLTLELCRWIG 200 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~---~~~k~il~~l~~ll~-~~d~~VR~~a~~l~~ely~~lG 200 (1972)
++...+..|.+.+.++||+++.-+|..|-.++++=|... +.-+.|+..|.+++. +.+..||+....++.+-+...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999877632 344778999999886 6788999999999888887776
Q ss_pred C
Q 000167 201 K 201 (1972)
Q Consensus 201 ~ 201 (1972)
.
T Consensus 118 ~ 118 (142)
T cd03569 118 N 118 (142)
T ss_pred C
Confidence 4
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=88.65 E-value=6.3 Score=42.73 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=68.0
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHH
Q 000167 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~l~D-s~~~VR~aA~~~l~~l~~~ 475 (1972)
..+..+.+..|..-++++||.+-..++..|..|+.+|+...... .-+.++..|.+.+.+ .+++||+...+.+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 35566777777778889999999999999999999998753322 247788889999988 8999999999999999888
Q ss_pred hCch
Q 000167 476 VGMR 479 (1972)
Q Consensus 476 ~ge~ 479 (1972)
++..
T Consensus 112 f~~~ 115 (144)
T cd03568 112 FKND 115 (144)
T ss_pred hCCC
Confidence 8754
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.25 E-value=1.5 Score=57.18 Aligned_cols=185 Identities=18% Similarity=0.236 Sum_probs=128.2
Q ss_pred cccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCCh-hhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChh
Q 000167 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 929 (1972)
Q Consensus 851 s~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~-~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~ 929 (1972)
...+.+-+++.++..+-.+|.--|+.+.+.+. .+.+..+ ..+++.+...+.|.|..++.+++.++..|+..++..
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~----~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID----HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHhh----hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 33455677888899999999999998888875 3443322 568889999999999999999999999999999876
Q ss_pred hHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc---hhhHH-HHHHHHhcCCCChhHHHHHHHHHHHHhccCC
Q 000167 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL---DKMVP-YVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (1972)
Q Consensus 930 ~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l---~~ll~-~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~ 1005 (1972)
..-..++..+-..-.|....+|.-..-|+..+..+... ..++. .+..+++++- .|.-..+++.+.+ ..+..
T Consensus 404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf-~paR~a~v~~l~a--t~~~~ 478 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPF-VPARKAGVLALAA--TQEYF 478 (690)
T ss_pred --hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCC-CCchhhhhHHHhh--ccccc
Confidence 33345666666666788999999999999988877531 22333 4455677653 2333344444432 12222
Q ss_pred CCCChhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 1006 GFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 1006 ~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
...++..-+.| +.....|.+..||..|..++..+....-
T Consensus 479 ~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 479 DQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred chhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 22233334444 5555689999999999988877665443
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.24 E-value=20 Score=51.37 Aligned_cols=257 Identities=10% Similarity=0.050 Sum_probs=138.1
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCc---------cccccccCC
Q 000167 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT---------VRASESTSS 836 (1972)
Q Consensus 766 ~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~---------~r~~~~~~s 836 (1972)
+ |.|.|..||--..-|+..+.+...|.. +|-...-..+.+.+.++|........|.-.|. ++..
T Consensus 58 ~-L~h~d~dvrllvacCvseilRi~aPea-Py~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~----- 130 (1266)
T KOG1525|consen 58 L-LKHKDKDVRLLVACCVSEILRIYAPEA-PYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFC----- 130 (1266)
T ss_pred H-hcCCCcChhHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHH-----
Confidence 5 899999999999999999999887653 22111122344555566665544322221111 0100
Q ss_pred CCCCCCCCCCcccccccccHHHHHhcCCC---CHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHH
Q 000167 837 VSSGGSDGLPREDISGKFTPTLVKSLESP---DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (1972)
Q Consensus 837 ~~~~~~d~lprvdIs~~l~~~ll~~l~d~---~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~ 913 (1972)
-..+.....|+...+=.-|++-..+. +|-. -++-+..++.+. . +.-.+++..|..-|-..+.+...
T Consensus 131 ---l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~---~~~i~~~li~e~----d-~v~~e~L~~ll~~lv~~~~~~~~ 199 (1266)
T KOG1525|consen 131 ---LLMLLEDCQELVHELFRTFFDLARKGHPKKVFN---MLDIAIMLITEE----D-TVQSELLDVLLENLVKPGRDTIK 199 (1266)
T ss_pred ---heeeccchHHHHHHHHHHHHHHHhccccHHHHH---HHHHHHHHHHhh----c-cchHHHHHHHHHHhccCCCCccH
Confidence 00011111122111111122222111 3333 222223333221 1 11255666665555444455555
Q ss_pred HHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCChhHHH
Q 000167 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRK 991 (1972)
Q Consensus 914 ~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~~~~~~~R~ 991 (1972)
.|..+-..+...++...++....++...+..-.-....++..-..-+-.+....+ +-.++|.|..-|... +-+.|.
T Consensus 200 ~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se--~~~~Rl 277 (1266)
T KOG1525|consen 200 EADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSE--QEEVRL 277 (1266)
T ss_pred HHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc--hHHHHH
Confidence 5655555555555555555555555444433332444455555555555544443 456777777777755 468999
Q ss_pred HHHHHHHHHhccCCC--CCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 992 DLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 992 ~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
.+.+.+.+.|..... .....++....+..+.|.+.+||-++.++...+...
T Consensus 278 ~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 278 KAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 999999888875433 122455566677789999999999998887766543
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.15 E-value=14 Score=49.33 Aligned_cols=176 Identities=18% Similarity=0.202 Sum_probs=116.2
Q ss_pred ChHHHHHHHHHHHHHhc--CCC-CCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhh-hHHHHHH
Q 000167 298 KWSERKDAVAELTKLAS--TKR-IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLL 372 (1972)
Q Consensus 298 kWkeR~eaL~~L~~l~~--~~k-i~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~-~llp~LL 372 (1972)
+=..-.+|+.+|..++. +.. +..--...+++.|.++++ +.|.-+...||+|+.+|+..+.....-.++ ..+|.++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 55566778888877542 222 222235689999999999 889999999999999999999877654433 4789999
Q ss_pred HHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhHHH-----HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000167 373 EKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVE-----DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1972)
Q Consensus 373 ~klkd-kk~~V~~aa~~aL~al~~~~~~~l~~il~-----~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1972)
+||-. .=-.|.|...+||..|-.. +..+|+. ..+..++==+-.+.+.++...+.|.....+..+ +++-+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ea 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEA 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHH
Confidence 98854 4456777777777777653 3333332 111222211223344455555666555554433 334667
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHhC
Q 000167 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 447 ~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~g 477 (1972)
+|.|...|.-.+..+-+..+-|+..+..-+-
T Consensus 337 lPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 337 LPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 8999999988888888888888877765544
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.08 E-value=7.1 Score=46.49 Aligned_cols=175 Identities=18% Similarity=0.175 Sum_probs=109.4
Q ss_pred hhhcCCChhhh-hcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHh-hhcC-CcHHHHHHHHHHHHHHHHHhch
Q 000167 9 KEAKKLPWEDR-LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVAD-SNAPVQDKALDALIAYLKAADA 85 (1972)
Q Consensus 9 ~~~~~lpl~er-l~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k-~v~D-sN~~vqe~~leal~~~v~~~~~ 85 (1972)
.|+-.+|+... +..++-+.|..|...|...-.. .++......|...+-+ .+++ -|-.+|..||.+|..+--..
T Consensus 51 r~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-- 126 (254)
T PF04826_consen 51 RDLGGISLIGSLLNDPNPSVREKALNALNNLSVN--DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-- 126 (254)
T ss_pred HHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc--
Confidence 45556666554 4468889998898888765322 2333344445544433 4443 48899999999998773111
Q ss_pred hhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh------hhHHHHHHHHhhcCCh-hhHHHHHHHHHHHHH
Q 000167 86 DAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV------DVFLDVMEKAIKNKVA-KAVVPAIDVMFQALS 157 (1972)
Q Consensus 86 ~~~~~~~~v~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~~------~~v~~~L~~~~~~Knp-Kv~~~~l~~l~~~l~ 157 (1972)
+.-......++.++. +|. +...+|..+..+++.+.+-... ..+...+..-|..+.+ .+...++.++..+-.
T Consensus 127 ~~~~~l~~~i~~ll~-LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 127 DYHHMLANYIPDLLS-LLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred chhhhHHhhHHHHHH-HHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 111112334555543 343 6788999999999988865321 1344455555666544 456777777777777
Q ss_pred HhCCCc--c---------------ChhHHHHhhhhhhcCCChhHHHHH
Q 000167 158 EFGAKI--I---------------PPKRILKMLPELFDHQDQNVRASS 188 (1972)
Q Consensus 158 ~fG~~~--~---------------~~k~il~~l~~ll~~~d~~VR~~a 188 (1972)
.++... . ..+.+-+.|..+..|+|+.||+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 206 NIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred hhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 766642 1 124477888899999999999863
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.78 E-value=1.3 Score=57.73 Aligned_cols=171 Identities=15% Similarity=0.124 Sum_probs=100.7
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 000167 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y--~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (1972)
|.+.+.-+.=.||.+-...|...+ +..+.++ ..+...|...+. |+...+..-.+.+-..+.. ++|-.
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~------~eyq~ 329 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE------EEYQV 329 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc------ccccc
Confidence 444555555555555444443322 1222222 234445544444 4333333332332222221 25778
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~--~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1972)
-++|.|++.|+-....||--+..=+..++.+. ..--+.|+|.+..++.+.|+.+|..|+..+..++...++..+.
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln--- 406 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN--- 406 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc---
Confidence 89999999999999999987777777777651 1123578999999999999999999999999888776655442
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 444 KDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
-+++..+.+.-.|.++..|....-|++.+
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeeccc
Confidence 23344444444455555554444444433
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.59 E-value=8.3 Score=49.10 Aligned_cols=196 Identities=17% Similarity=0.127 Sum_probs=127.5
Q ss_pred hhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHH
Q 000167 291 WEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (1972)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 369 (1972)
....++++-+.|+..+..|.-+.. ...|...-|..|...|.+++-|-.+.|+.+|..|+..+- ++..+=+.....++-
T Consensus 97 lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q-e~~~neen~~~n~l~ 175 (885)
T COG5218 97 LRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ-EMELNEENRIVNLLK 175 (885)
T ss_pred HhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccCChHHHHHHHHH
Confidence 344588889999999998887775 334555667888888889999999999999999998876 333333444444554
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000167 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1972)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1972)
.++. -|....||.++ |-.+... ..+.+- |++-..+-+...|.. +-.+|+.+.+.......-|.+. .
T Consensus 176 ~~vq--nDPS~EVRr~a---llni~vd-nsT~p~----IlERarDv~~anRr~---vY~r~Lp~iGd~~~lsi~kri~-l 241 (885)
T COG5218 176 DIVQ--NDPSDEVRRLA---LLNISVD-NSTYPC----ILERARDVSGANRRM---VYERCLPRIGDLKSLSIDKRIL-L 241 (885)
T ss_pred HHHh--cCcHHHHHHHH---HHHeeeC-CCcchh----HHHHhhhhhHHHHHH---HHHHHhhhhcchhhccccceeh-h
Confidence 4443 47777888754 3333221 133333 443334444445544 3456776664332222223333 6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHh
Q 000167 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1972)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~ 501 (1972)
+..+++|..-.||.++..++..-+...-+-.+-.+++.||-.+++-....++
T Consensus 242 ~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik 293 (885)
T COG5218 242 MEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIK 293 (885)
T ss_pred hhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHH
Confidence 7789999999999999999987776555544667888888776664444333
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.50 E-value=10 Score=45.37 Aligned_cols=305 Identities=14% Similarity=0.132 Sum_probs=161.4
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhc--cccchhH--HHHHHHHhcCCCCccchH--HHHHHHHHHHHHHHHHcCCC
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLDQSV--EILVRLVCMLPGWSEKNV--QVQQQVIEVINYLAATATKF 677 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~--~~~~~~~--~~lv~~L~~~p~~~DsN~--qV~~~~Le~l~~l~~~~~~~ 677 (1972)
+.+..+|.|.+-..-+.|+-++.+++... .+.+... .++.|+.. |-|.+. ...-.+-=++..++.-...-
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfve----fm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVE----FMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHH----HHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 67889999999999999999999998662 2232221 22333321 222211 11111111233333211111
Q ss_pred chhhH-HHHHHHHHhhhcch--hhhHHHHHHHHHHHhhcC--hhHH-----HHHHHHhhhhCC-ChHHHHHHHHHHHHHH
Q 000167 678 PKKCV-VLCLLGISERVADI--KTRAHAMKCLTTFSEAVG--PGFI-----FERLYKIMKDHK-NPKVLSEGILWMVSAV 746 (1972)
Q Consensus 678 ~~~~~-~~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~--~~~v-----l~~l~~~l~~~K-npKv~~e~l~~L~~~i 746 (1972)
++-.+ ...+|.++.-|.++ -+|+.+.=+|..++.-.. -++| ++-++..+..++ .-+...-+-..|+++.
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 11000 13456666666664 367777777766654211 1222 333444332222 1244444555566666
Q ss_pred HHhCCC--CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhh-hcccHHHHHHHHHHHhcCCCCCCCC
Q 000167 747 EDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKNPFEGTVV 823 (1972)
Q Consensus 747 ~~fG~~--~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~efek~~~~~~~~ 823 (1972)
..-... --++...++.+.++ +-..+++|-.-|.-.+.+|..-..+.+...+ .++++.+.+.|..+-.+++. |
T Consensus 230 RGknP~P~w~~isqalpiL~KL-iys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt--P-- 304 (526)
T COG5064 230 RGKNPPPDWSNISQALPILAKL-IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT--P-- 304 (526)
T ss_pred CCCCCCCchHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC--H--
Confidence 522211 12355677788888 8888998888777777666543333344444 45566666666665444421 1
Q ss_pred CCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhc
Q 000167 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 903 (1972)
Q Consensus 824 p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~ 903 (1972)
..|-+-. - ..|.|.-..+=|-.-..+.|...+++++-.+|+||--.+..|-.+....|+.-.-.+|++.|...
T Consensus 305 alR~vGN-I------VTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~l 377 (526)
T COG5064 305 ALRSVGN-I------VTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHL 377 (526)
T ss_pred HHHhhcC-e------eecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHH
Confidence 1111100 0 01122222222222233456667888888999999877776654322233322225677888888
Q ss_pred cccchHHHHHHHHHHHHHHHH
Q 000167 904 LYDSNKNLVMATLITLGAVAS 924 (1972)
Q Consensus 904 L~DsN~~V~~~Al~~l~~La~ 924 (1972)
|.-..-++..+||=.+.....
T Consensus 378 ls~ae~k~kKEACWAisNats 398 (526)
T COG5064 378 LSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 888888888898877665543
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=86.35 E-value=18 Score=44.31 Aligned_cols=148 Identities=12% Similarity=0.123 Sum_probs=113.0
Q ss_pred ccCChHHHHHHHHHHHHHhc--CCCCCC-CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhc-hhhhhhhHHH
Q 000167 295 KATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLP 369 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~--~~ki~~-~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp 369 (1972)
..+.|.+-...|..|.+.++ .+.+.- ..-..+.+.|.+++. ..-.-|=..|+.+.+.+.+.+|.+ +.....
T Consensus 21 ~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~---- 96 (307)
T PF04118_consen 21 SSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLP---- 96 (307)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcH----
Confidence 36899999999999988765 333322 233468888888888 777778888889988888888754 222222
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000167 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1972)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1972)
-..+.++..+.+-.-+||-..++++...+-..++ .+.++++.++-.
T Consensus 97 ---------------------------------i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~s 142 (307)
T PF04118_consen 97 ---------------------------------IYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILS 142 (307)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHH
Confidence 2334455555666678888888888887776666 677888999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhCchh
Q 000167 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1972)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~ 480 (1972)
+..+++|...|+-+...+.+..+...+|++.
T Consensus 143 lLpGLede~sE~~~~~~~ll~~l~~~v~~~~ 173 (307)
T PF04118_consen 143 LLPGLEDEGSEFFDRTLKLLDKLKEAVGDKY 173 (307)
T ss_pred hccccccCCchHHHHHHHHHHHHHHhcChhH
Confidence 9999999999999999999999999999863
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.00 E-value=7.5 Score=55.43 Aligned_cols=199 Identities=12% Similarity=0.079 Sum_probs=134.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (1972)
.+++.+.-++-..|..|+.++.+++...+....-..+......+.+...|-+..|+..+..++..+.+++++.+.||++.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 56778888899999999999999997432222112245566777788899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--------chhhHHHHHHHHhcC------------------CCChhHH
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--------LDKMVPYVTTALTDA------------------KLGAEGR 990 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--------l~~ll~~l~~~L~~~------------------~~~~~~R 990 (1972)
++|.++-..-|..-.|..+|.+........-. -..+++.+.+.+... + .+++-
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k-~~Rvi 203 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESK-YQRVI 203 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHh-hHHHH
Confidence 99999999899988898888887765543211 012222222222110 1 12333
Q ss_pred HHHHHHHHHHhccCCCCCC-------hhhhHHH--HHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCC
Q 000167 991 KDLFDWLSKQLTGLSGFPD-------AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (1972)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~-------~~~ll~p--l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~ 1056 (1972)
...+..+...+.......+ ...+... +.+.+.++++.||.+..+++-.+...+....+....+.++
T Consensus 204 ~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~ 278 (1312)
T KOG0803|consen 204 SSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLK 278 (1312)
T ss_pred HHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhh
Confidence 4455555555533332111 2222222 5667899999999999999998887766653333333333
|
|
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=85.46 E-value=5.8 Score=41.15 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhh--HHHHHHH----H-h-
Q 000167 304 DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF--LLPVLLE----K-L- 375 (1972)
Q Consensus 304 eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~--llp~LL~----k-l- 375 (1972)
..+..|..++... +..+.++++.|.++|.+.|..++..|+.++..+.+.-+..|..++.. ++-.++. . .
T Consensus 19 ~~i~~i~d~~~~~---~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~ 95 (115)
T cd00197 19 PLIMEICDLINET---NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLG 95 (115)
T ss_pred HHHHHHHHHHHCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccccc
Confidence 4566666665422 34578999999999999999999999999999999999998876432 2222321 1 1
Q ss_pred ccCcHHHHHHHHHHHHHHH
Q 000167 376 KEKKPTVAESLTQTLQAMH 394 (1972)
Q Consensus 376 kdkk~~V~~aa~~aL~al~ 394 (1972)
++....||+.+...+..|.
T Consensus 96 ~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 96 DDVSTNVREKAIELVQLWA 114 (115)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 2345677777777776653
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.02 E-value=52 Score=40.49 Aligned_cols=181 Identities=12% Similarity=0.147 Sum_probs=112.9
Q ss_pred hccCChHHHHHHHHHHHHHhc----CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh-hhHH
Q 000167 294 VKATKWSERKDAVAELTKLAS----TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLL 368 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~----~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~ll 368 (1972)
..+.+-.+|..|++.|..++. +..+.+ .+-+...+. .+++++..++..|+.+|+..+..--+.-+... ...+
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 356778889999999988773 222222 333444444 88899999999999999999875332211111 1256
Q ss_pred HHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhH-----HHHHHHHhhc--CChHHHHHHHHHHHHHHHhcChh-HH
Q 000167 369 PVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDV-----VEDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKA-AV 439 (1972)
Q Consensus 369 p~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~i-----l~~l~~~l~~--Knp~vR~~~l~~L~~~l~~~~~~-~l 439 (1972)
+.|+..+ ++....++..+.-|+-+++.+.......+ ...|..++++ .+.+.|.-++.++..+++..... .+
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 6777776 45555777888899999988722222222 2456677886 66888889999999888765321 11
Q ss_pred HHhhhhHHH-HHHHHhcCCChHHHHHHHHHHHHHHHHhCch
Q 000167 440 LKVHKDYVP-ICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1972)
Q Consensus 440 ~~~l~~l~p-~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~ 479 (1972)
.. ....+ .+.....--+-++++++..++-.+......+
T Consensus 249 ~~--~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 249 AS--SLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTR 287 (342)
T ss_pred HH--HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhc
Confidence 11 11112 2223333445577788877777666655543
|
|
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=85.00 E-value=4.4 Score=42.39 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHH
Q 000167 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (1972)
Q Consensus 863 ~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll 942 (1972)
+|.+|-.=--.+++|.++..+ .+..+.+++..|.+||+|.+..|...+|++|..++..-...|...++.-...|-
T Consensus 11 sdd~~p~pgy~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik 85 (122)
T cd03572 11 SDDDEPTPGYLYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIR 85 (122)
T ss_pred cCCCCCCchHHHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHH
Confidence 444444444445566666542 233468999999999999999999999999999998877788776665544333
Q ss_pred HHh---C--------CCcHHHHHHHHHHHHHHHH
Q 000167 943 KCL---G--------DNKKHMRECTLTVLDAWLA 965 (1972)
Q Consensus 943 ~~L---~--------D~k~~Vr~Aa~~aL~~i~~ 965 (1972)
.+. + +....||.+|.+++..+..
T Consensus 86 ~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 86 ECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 322 2 2345799999999988764
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=84.67 E-value=15 Score=48.22 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=85.7
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000167 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (1972)
Q Consensus 321 ~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~ 400 (1972)
.--.+.+.++..++.|..+.|+..|++-|-.+|+.-. .++.-+.-.|...|..-.+..++++..+|..++.. .
T Consensus 55 ~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~---d 127 (556)
T PF05918_consen 55 DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ---D 127 (556)
T ss_dssp GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc---C
Confidence 3345778899999999999999999999999988643 35666677777777788888899999999999985 3
Q ss_pred hHhHHHHHHHHhh---cCChHHHHHHHHHHHHHHHhcChhHHH--H-hhhhHHHHHHHHhcC
Q 000167 401 LVDVVEDVKTSVK---NKVPLVRSLTLNWVTFCIETSSKAAVL--K-VHKDYVPICMECLND 456 (1972)
Q Consensus 401 l~~il~~l~~~l~---~Knp~vR~~~l~~L~~~l~~~~~~~l~--~-~l~~l~p~l~k~l~D 456 (1972)
+...+..|+..+. +....+|..++.||..-+...+...+. + .-.-++..+.+.|.|
T Consensus 128 ~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 128 PKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 3334444443332 456789999999998777665444332 1 224466777888887
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.67 E-value=4.9 Score=51.48 Aligned_cols=107 Identities=25% Similarity=0.413 Sum_probs=82.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHH
Q 000167 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1972)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~ll 938 (1972)
.+.+.||..=.+ |..+|+. ..-. ..|.+.+|++|++..+..++..||.+|..+++.+|..|... -+.|+
T Consensus 13 ~l~~pDWa~Nle----IcD~IN~--~~~~---~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 13 SLAEPDWALNLE----ICDLINS--TEGG---PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred cccCccHHHHHH----HHHHHhc--CccC---cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 467789986544 5555532 1112 26999999999999999999999999999999999999843 35689
Q ss_pred HHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC-chhhHHHH
Q 000167 939 SDILKCLGDN--KKHMRECTLTVLDAWLAAVH-LDKMVPYV 976 (1972)
Q Consensus 939 p~ll~~L~D~--k~~Vr~Aa~~aL~~i~~~~~-l~~ll~~l 976 (1972)
.-++...+.+ ...||+-+...|++|....+ .+.-+|.+
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~ 124 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDY 124 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhH
Confidence 9998888776 45699999999999998865 24444433
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=84.66 E-value=7.8 Score=48.80 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=41.2
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHH
Q 000167 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1972)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 469 (1972)
++.|-+|..++.++..+-...++.. +..++|.+..+|.+++.-|+..|+-|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~----l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQ----LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHH----HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 7889999999999998666655554 478999999999999999999998764
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=84.41 E-value=13 Score=40.20 Aligned_cols=96 Identities=26% Similarity=0.395 Sum_probs=70.0
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh--hhhHHHHH
Q 000167 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 371 (1972)
+.+.+|.- +-.|..+++.. +..-.+.+++|+++|+..|.++...|+.++..+.+..|..|... ...++..|
T Consensus 18 ~~~~Dw~~----~l~icD~i~~~---~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l 90 (140)
T PF00790_consen 18 LPSPDWSL----ILEICDLINSS---PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDEL 90 (140)
T ss_dssp SSS--HHH----HHHHHHHHHTS---TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHH
Confidence 45568843 33455555322 23346899999999999999999999999999999999998755 34677777
Q ss_pred HHHhccCcHH----HHHHHHHHHHHHHHh
Q 000167 372 LEKLKEKKPT----VAESLTQTLQAMHKA 396 (1972)
Q Consensus 372 L~klkdkk~~----V~~aa~~aL~al~~~ 396 (1972)
.+.++.+... |++-+.+.+..|...
T Consensus 91 ~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 91 VKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 7766654432 788888888888765
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=84.06 E-value=18 Score=46.34 Aligned_cols=179 Identities=15% Similarity=0.178 Sum_probs=106.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc-hHHHHHHHHH---HHHHHHHHc-C-h--
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLI---TLGAVASAM-G-P-- 928 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~Ds-N~~V~~~Al~---~l~~La~al-g-~-- 928 (1972)
++.+.+-+.+-..|.+||+.|+. ...++.|+..|...+.+. ..+|++.-+. .+-.++.++ . +
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34455667899999999998862 222477888888877653 3333333333 333334443 2 2
Q ss_pred hhHhhhhhHHHHHHHHhCC----------CcHHHHHHHHHHHHHHHHhcC--c----hhhHHHHHHHHhcCCCChhHHHH
Q 000167 929 AVEKSSKGVLSDILKCLGD----------NKKHMRECTLTVLDAWLAAVH--L----DKMVPYVTTALTDAKLGAEGRKD 992 (1972)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D----------~k~~Vr~Aa~~aL~~i~~~~~--l----~~ll~~l~~~L~~~~~~~~~R~~ 992 (1972)
.+++|+..++|.++.|+-. +.=.+|+-|...+..++.+.+ . .+++..+..++.+.+-.+....+
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 3689999999999998853 333589999999999998876 2 33455566666554324556777
Q ss_pred HHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCCHH---HHHHHHHHHHHHHHHcCh
Q 000167 993 LFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSD---VRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 993 ~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~d---VR~aA~~~l~~l~~~~G~ 1045 (1972)
++..|..+-...-. .+.+.....-+...+.+.+.. ....|..+...+.++...
T Consensus 361 ai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 361 AIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 77777653221111 122222222233334433332 355666777777666554
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=83.96 E-value=6.5 Score=43.58 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=69.0
Q ss_pred hhhhhHHHHHHHHhccCc------------------HHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHH
Q 000167 362 GSSRFLLPVLLEKLKEKK------------------PTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRS 421 (1972)
Q Consensus 362 ~~~~~llp~LL~klkdkk------------------~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~l~~Knp~vR~ 421 (1972)
++...++|.++..++-++ -.+|.+|.+|+.+++.. ....+..+++.+..|+++ ...+|.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 556777788777655443 36899999999999987 225577899999999999 999999
Q ss_pred HHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh
Q 000167 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1972)
Q Consensus 422 ~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l 454 (1972)
-|...|.++....+. .+...++.+++.+.+.|
T Consensus 84 L~~~~l~kl~~~~p~-~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 84 LCHLMLSKLAQLAPE-EVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHS-HH-HHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHh
Confidence 999999998766544 45556788888888877
|
; PDB: 4A0C_A 1U6G_C. |
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=83.91 E-value=89 Score=39.57 Aligned_cols=94 Identities=7% Similarity=0.122 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHccc---cCCC-CChhhHHHHHHhc----cc---cchHHHHHHHHHHHHHHHHHcChhhHh
Q 000167 864 SPDWKVRLESIEAVNKILEEANK---RIQP-AGTGELFGGLRGR----LY---DSNKNLVMATLITLGAVASAMGPAVEK 932 (1972)
Q Consensus 864 d~~Wk~R~eale~l~~ll~~a~~---~I~~-~~~~eL~~~L~~~----L~---DsN~~V~~~Al~~l~~La~alg~~~~~ 932 (1972)
..||+.+..|+..+..+...... .+.. +..-++...+... |. +....++..||+.+..+-..+.+ +
T Consensus 266 ~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~---~ 342 (370)
T PF08506_consen 266 SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK---E 342 (370)
T ss_dssp TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H---H
T ss_pred cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH---H
Confidence 34899999999988888753211 1111 1123444444432 22 44566888889888877766653 4
Q ss_pred hhhhHHHHHHHHhCCCcHHHHHHHHHHH
Q 000167 933 SSKGVLSDILKCLGDNKKHMRECTLTVL 960 (1972)
Q Consensus 933 ~~~~llp~ll~~L~D~k~~Vr~Aa~~aL 960 (1972)
.+..++|.++..|+++...|+..|..|+
T Consensus 343 ~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 343 QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 7788999999999999999999987764
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=83.65 E-value=13 Score=45.18 Aligned_cols=137 Identities=14% Similarity=0.214 Sum_probs=105.8
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc----hh--hhhhhHHHHHHHHhc--------cCcHHHHHHHH
Q 000167 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FS--GSSRFLLPVLLEKLK--------EKKPTVAESLT 387 (1972)
Q Consensus 322 ~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~----f~--~~~~~llp~LL~klk--------dkk~~V~~aa~ 387 (1972)
.+.-+++.+...+.|....+...+|+|+..|...+... +. .....+..++...+- +....+...+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 45678888999999999999999999999999876533 23 346777777777777 77888999999
Q ss_pred HHHHHHHHh----c----CCChHhHH-HHHHHHhhc--C--ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh
Q 000167 388 QTLQAMHKA----G----CLNLVDVV-EDVKTSVKN--K--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1972)
Q Consensus 388 ~aL~al~~~----~----~~~l~~il-~~l~~~l~~--K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l 454 (1972)
.|+..++.. + ...+.+++ +.|+..+.+ + ++.++...++.+..++...+.. ..++++.++|.+...+
T Consensus 196 ~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 196 PALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHh
Confidence 999999663 0 12244555 447776653 3 6999999999999999887654 4578899999999999
Q ss_pred cCCCh
Q 000167 455 NDGTP 459 (1972)
Q Consensus 455 ~Ds~~ 459 (1972)
.+.+.
T Consensus 275 ~npf~ 279 (282)
T PF10521_consen 275 ENPFG 279 (282)
T ss_pred cCCCc
Confidence 88763
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.33 E-value=15 Score=44.51 Aligned_cols=186 Identities=14% Similarity=0.147 Sum_probs=105.9
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
+.+.|++.+.|.+-|++..|-..++.+...- ..+.+-.-..-++.|.+.|.|+-...+....-||..|+..-+...--.
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 4456777778888888777777777665431 111110001123445566677777777778888887776554432111
Q ss_pred hhhHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHh-cc
Q 000167 934 SKGVLSDILKCLG--DNKKHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL-TG 1003 (1972)
Q Consensus 934 ~~~llp~ll~~L~--D~k~~Vr~Aa~~aL~~i~~~~~--l-----~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l-~~ 1003 (1972)
=..|+.+++..|. |+. .++=+|..+|..++.... . ..-+|.+.+.+.+.. -.++.++-..++..- ..
T Consensus 331 dagfl~pLVrlL~~~dnE-eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p--vsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNE-EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP--VSVQSEISACIAQLALND 407 (550)
T ss_pred cccchhHHHHHHhcCCch-hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHhcc
Confidence 1235666666554 443 366667778877776431 1 224566677776653 345555544444321 11
Q ss_pred CCCCCChh-hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Q 000167 1004 LSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1972)
Q Consensus 1004 ~~~~~~~~-~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~ 1043 (1972)
..+..-+. -++..++.-+.|.+.+||.+|.++|..+...+
T Consensus 408 ~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 408 NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 11111111 12333666779999999999999998876543
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=83.23 E-value=19 Score=38.53 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=65.3
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcC---CChHHHHHHHHHHHHHH
Q 000167 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLND---GTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~D---s~~~VR~aA~~~l~~l~ 473 (1972)
..+....+..|..-++++||.+...++..|..|+.++++.....+. +.++..+.+.+.+ .+++||..+.+.+....
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 3566777888888899999999999999999999999875332222 3566667777765 58899999999999999
Q ss_pred HHhCch
Q 000167 474 KSVGMR 479 (1972)
Q Consensus 474 ~~~ge~ 479 (1972)
..++..
T Consensus 112 ~~f~~~ 117 (133)
T cd03561 112 ESFGGH 117 (133)
T ss_pred HHhcCC
Confidence 998864
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.90 E-value=16 Score=49.02 Aligned_cols=180 Identities=16% Similarity=0.121 Sum_probs=119.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHH--ccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEE--ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~--a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
.+.+..+.|+.--+|-.|+..+..+++. +...+.. ..++.++...|+|-+.-|...|++.+..++.. |
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~---ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQG---EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhH---HHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------c
Confidence 4667778888899999999999999983 2122222 45788889999999999999888877777654 5
Q ss_pred hhhHHHHHHHHhCCCcH-H---HHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc
Q 000167 934 SKGVLSDILKCLGDNKK-H---MRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (1972)
Q Consensus 934 ~~~llp~ll~~L~D~k~-~---Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~ 1003 (1972)
-+.++|.+.+-+...|+ . .|=-+-+++..++...| .+.++..+..++.++ .-.-|...+..+..+...
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP--DHEFRASSLANLGQLCQL 877 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHH
Confidence 57788888885544332 2 23334466666777666 233333344444433 223477777776665543
Q ss_pred CCC--CCChhhhHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHcChhH
Q 000167 1004 LSG--FPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQET 1047 (1972)
Q Consensus 1004 ~~~--~~~~~~ll~pl~~~-L~D~~~dVR~aA~~~l~~l~~~~G~~~ 1047 (1972)
... +..+.+.+..++.. -.|...-||.+|...+..+....|++.
T Consensus 878 ~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 878 LAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 321 22223333334443 379999999999999999999999753
|
|
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=82.64 E-value=6.7 Score=41.08 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=51.7
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh---HHHHHHHHh--------cCCChHHHHHHHH
Q 000167 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD---YVPICMECL--------NDGTPEVRDAAFS 467 (1972)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~---l~p~l~k~l--------~Ds~~~VR~aA~~ 467 (1972)
..+.+|++.|..-|++++|.||.-+|..|..++..-+.. +...+.. ++..+...- +|....||++|.+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 445678888888899999999999999999888765433 3322222 333333322 4556799999999
Q ss_pred HHHHHH
Q 000167 468 VLAAIA 473 (1972)
Q Consensus 468 ~l~~l~ 473 (1972)
++..+.
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 998765
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=82.21 E-value=16 Score=41.44 Aligned_cols=114 Identities=14% Similarity=0.058 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH---
Q 000167 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL--- 440 (1972)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~--- 440 (1972)
+..+++.+++.+-.++..||.++...+..+...|-+++..++|.+..-..+.|+.+|..+...+....++++.-...
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~ 85 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYS 85 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45678889999999999999999999999998877889999999998888999999999999999988887642221
Q ss_pred HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhC
Q 000167 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~g 477 (1972)
..++.....-..+-.|.....+......++.+...++
T Consensus 86 ~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 86 EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 2222222223334455544333335556666666665
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=82.18 E-value=18 Score=39.03 Aligned_cols=80 Identities=8% Similarity=0.057 Sum_probs=62.5
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcC------CChHHHHHHHHHHHH
Q 000167 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND------GTPEVRDAAFSVLAA 471 (1972)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~D------s~~~VR~aA~~~l~~ 471 (1972)
.+..+.+..|..-++++||.+-..++..|..|+.+|+...-... -+.++..+++.+.+ .++.||+...+.+-.
T Consensus 34 ~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 34 EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 44556666777778899999999999999999999987533222 26677777777753 688999999999988
Q ss_pred HHHHhCc
Q 000167 472 IAKSVGM 478 (1972)
Q Consensus 472 l~~~~ge 478 (1972)
....++.
T Consensus 114 W~~~f~~ 120 (139)
T cd03567 114 WTLELPH 120 (139)
T ss_pred HHHHhcc
Confidence 8877764
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.01 E-value=2.1e+02 Score=38.83 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHhhhcchh---hhHHHHHHHHHHHhhcChhHH---HHHHHHhhh-hCCChHHHHHHHHHHHHHHHHh---
Q 000167 680 KCVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMK-DHKNPKVLSEGILWMVSAVEDF--- 749 (1972)
Q Consensus 680 ~~~~~il~~LveKlgd~K---~r~~a~~~L~~l~e~~~~~~v---l~~l~~~l~-~~KnpKv~~e~l~~L~~~i~~f--- 749 (1972)
..+...++.|+|++.... -|..|...|.+++..+..... +..++..+. +-.+|.....+|+.+..++..=
T Consensus 18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 355667778888777653 266666677777665432211 111111111 1234444555555444444311
Q ss_pred ------------CCC----CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhh
Q 000167 750 ------------GVS----HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (1972)
Q Consensus 750 ------------G~~----~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (1972)
|.- -+.-+..|..+... +++-|-.||..|++++..+-.+-|..++..+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~-~e~~DF~VR~~aIqLlsalls~r~~e~q~~l 161 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQS-LEEFDFHVRLYAIQLLSALLSCRPTELQDAL 161 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHH-HHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence 000 01113456666666 8888999999999999999988887766544
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=81.94 E-value=1.5e+02 Score=39.30 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=80.6
Q ss_pred ChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHH--HHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 000167 927 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (1972)
Q Consensus 927 g~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l--~~ll~--~l~~~L~~~~~~~~~R~~~l~~L~~~l~ 1002 (1972)
...+++.+..++|+++.+|+.....||..+.+.+..+-..+.- .--+| .|....+++..++.+|.-.+-|+..-++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 4568899999999999999999999999999999999888752 23344 5677777654457899999999987777
Q ss_pred cCCCCCChhhhHHHHHhhcCCCC---HHHHHHHHHHHHHHHHHc
Q 000167 1003 GLSGFPDAAHLLKPASIAMTDKS---SDVRKAAEACIVEILRAG 1043 (1972)
Q Consensus 1003 ~~~~~~~~~~ll~pl~~~L~D~~---~dVR~aA~~~l~~l~~~~ 1043 (1972)
..+.. +-..+++.++.++.... .++.......+..+++..
T Consensus 94 Rl~~~-e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~ 136 (501)
T PF13001_consen 94 RLDDE-ERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLL 136 (501)
T ss_pred cCCHH-HHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcC
Confidence 66431 22344555888876432 334334434444444443
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.53 E-value=25 Score=43.81 Aligned_cols=110 Identities=15% Similarity=0.242 Sum_probs=81.6
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHhH
Q 000167 330 LKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDV 404 (1972)
Q Consensus 330 L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~-----~~l~~i 404 (1972)
|...++.-|.+|+..|+.-|..+-..--.....+.-.+++.+.+..-|....||++...+++.++-..| ..+.-+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 334555667777777777666665542222334556677888888889999999999999999665422 223457
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000167 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1972)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1972)
++.+..+|.|-.|.+|..++.||..++..+++...
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 88899999999999999999999999999987533
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.33 E-value=63 Score=43.62 Aligned_cols=178 Identities=12% Similarity=0.170 Sum_probs=106.2
Q ss_pred HHHHHhhhcC-ChHHHHHHHHHHHHHHHhccc--cc-----hhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC
Q 000167 604 ADTVGQLKSA-VWKERLEAISSLRQQVEAVQN--LD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 675 (1972)
Q Consensus 604 ~~l~~~L~s~-~Wk~Rl~a~e~L~~~v~~~~~--~~-----~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~ 675 (1972)
..++.+|+.. +--.-++++.+|.+.+.-+.+ +. ..+.+|+.+|. .+.||-++..++.+|.++.+.+|
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~-----~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLS-----HEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHhhcc
Confidence 4567777765 777777788777766543222 11 12344555554 57899999999999999999887
Q ss_pred CCchhhH-HHHHHHHHhhhcchhhhH---HHHHHHHHHHhhcChhHH----HHHHHHhhhhCCChHHHHHHHHHHHHHHH
Q 000167 676 KFPKKCV-VLCLLGISERVADIKTRA---HAMKCLTTFSEAVGPGFI----FERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (1972)
Q Consensus 676 ~~~~~~~-~~il~~LveKlgd~K~r~---~a~~~L~~l~e~~~~~~v----l~~l~~~l~~~KnpKv~~e~l~~L~~~i~ 747 (1972)
.-..-.+ ...||.+++||-..-.-+ ++.++|..|....+-..+ +..++.++ +--+.-++..+|...+++..
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 5332222 247899999988865444 444455555544433221 11122221 11233455566666667766
Q ss_pred HhCCCCCC-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 000167 748 DFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (1972)
Q Consensus 748 ~fG~~~l~-~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~ 788 (1972)
......+. +-+.++.+..+ |++.+..+-+.+.-++..+..
T Consensus 324 si~sd~f~~v~ealPlL~~l-Ls~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPL-LSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred cCCCccchHHHHHHHHHHHH-HhhccchhHHHHHHHHHHHHH
Confidence 55544332 34566777777 888887766666556555543
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=81.15 E-value=4.8 Score=45.76 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhC
Q 000167 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (1972)
Q Consensus 129 v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (1972)
-++.+++...+.+++++..++..+..+++ +|. ++|+..+|.+..|..++|+.||+.|..+..+++.--+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~-qGL--vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR-QGL--VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cCC--CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 45566777889999999999999988887 686 6799999999999999999999999999998876554
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=80.61 E-value=52 Score=49.30 Aligned_cols=182 Identities=12% Similarity=0.163 Sum_probs=121.0
Q ss_pred CChHHHHHHHHHHHHHhc----CCCCCCCCh-HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHH
Q 000167 297 TKWSERKDAVAELTKLAS----TKRIAPGDF-TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (1972)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~----~~ki~~~~y-~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (1972)
.+=..+.-|++.|++++- ...+..-.+ .++++.|..++. ..+..|....++|+..|...-+..+..-++.++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 355578888888888762 222222223 378888888787 66778899999999999988888888888889988
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHh--cCCCh--HhHHHHHHHHh----hcC-ChHHHHHHHHHHHHHHHhcCh-----
Q 000167 371 LLEKLKEKKPTVAESLTQTLQAMHKA--GCLNL--VDVVEDVKTSV----KNK-VPLVRSLTLNWVTFCIETSSK----- 436 (1972)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~--~~~~l--~~il~~l~~~l----~~K-np~vR~~~l~~L~~~l~~~~~----- 436 (1972)
+--.++++.+.+++.+.+++..++.. .+.+. ...+.+++.++ +++ +..+=..++.+|..|......
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~ 1308 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGS 1308 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccc
Confidence 88888999999999999999988764 11111 23344444433 333 355555666666654221100
Q ss_pred ------------------------------hHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 437 ------------------------------AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 437 ------------------------------~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
.....+-=.++-.+.++..|..++||..|.+.|-.+....|.
T Consensus 1309 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1309 SSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred cccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 000011112333445667899999999999999888888885
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=80.60 E-value=12 Score=38.52 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=59.3
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhcc
Q 000167 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (1972)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld 489 (1972)
.+...-|..++.-+..+++ .....+....+.++-.|..+++.. ++|+.|.+|-..|.+.++++++.++++..-
T Consensus 26 ~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIF 98 (107)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3556889999999999998 444556666677777777777766 999999999999999999988888887653
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=80.52 E-value=9.1 Score=38.18 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=66.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (1972)
..++.+.|..--+|-.|+..+.+++.... ........++..+...|+|...-|...|++.+..|+... -..
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-------p~~ 77 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-------PDE 77 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-------hHH
Confidence 45667788888899999999999998532 222234678888899999999999999999999998654 345
Q ss_pred HHHHHHHHhCCCc
Q 000167 937 VLSDILKCLGDNK 949 (1972)
Q Consensus 937 llp~ll~~L~D~k 949 (1972)
++|.+++.+.|.+
T Consensus 78 vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 78 VLPILLDEYADPS 90 (92)
T ss_pred HHHHHHHHHhCcc
Confidence 7888888777654
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.42 E-value=22 Score=42.41 Aligned_cols=168 Identities=13% Similarity=0.136 Sum_probs=104.4
Q ss_pred hhhccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 000167 292 EGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1972)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~~~~ki~~--~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (1972)
..+.+.+-+.|..|+..|..+....+-.. ..| +...+...+. ..|+.+...++++|..|. ...++...+...+
T Consensus 61 ~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~i 136 (254)
T PF04826_consen 61 SLLNDPNPSVREKALNALNNLSVNDENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANYI 136 (254)
T ss_pred HHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhhH
Confidence 34566777889889999888763211110 123 3344444555 568888888899998886 3344455566678
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-----HHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChh-----
Q 000167 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-----VVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKA----- 437 (1972)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~-----il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~~----- 437 (1972)
|.++..+...+..++..+-.+|..+..+ ..-..+ ++..+..-++.+ +..+-..++.|+..+-..+.+.
T Consensus 137 ~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~ 215 (254)
T PF04826_consen 137 PDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFV 215 (254)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceec
Confidence 8888888777777887777777766554 111112 233444444433 4567778888888765544221
Q ss_pred -------HHH---HhhhhHHHHHHHHhcCCChHHHHH
Q 000167 438 -------AVL---KVHKDYVPICMECLNDGTPEVRDA 464 (1972)
Q Consensus 438 -------~l~---~~l~~l~p~l~k~l~Ds~~~VR~a 464 (1972)
.+. .-.+.+..-+.....++|++||+.
T Consensus 216 ~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 216 QDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred cccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 111 123557777778888999999874
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.16 E-value=6.6 Score=49.65 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=63.1
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh
Q 000167 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1972)
Q Consensus 334 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdk-k~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l 412 (1972)
++|.|--|++.|.-+++.++-.= +.+++..++.+.++ +..||-...-+|.-.+.. ++....++.+-.-+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~ 630 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAG--TGDKVATDILEALM 630 (926)
T ss_pred cccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHh
Confidence 34555555555555554443211 23455566666443 566666655555554443 34333333333444
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChH
Q 000167 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (1972)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 460 (1972)
.+-|--||+.++..+..++-.|.+. +.+..+.|...+-..+.|.+.+
T Consensus 631 ~D~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 631 YDTNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hCcHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhhHh
Confidence 5667777777777777666665543 4444566666666666666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1972 | ||||
| 2of3_A | 266 | Tog Domain Structure From C.Elegans Zyg9 Length = 2 | 6e-26 | ||
| 2qk2_A | 242 | Structural Basis Of Microtubule Plus End Tracking B | 2e-09 | ||
| 4ffb_C | 278 | A Tog:alphaBETA-Tubulin Complex Structure Reveals C | 6e-06 | ||
| 2qk1_A | 249 | Structural Basis Of Microtubule Plus End Tracking B | 6e-05 |
| >pdb|2OF3|A Chain A, Tog Domain Structure From C.Elegans Zyg9 Length = 266 | Back alignment and structure |
|
| >pdb|2QK2|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215 And Eb1 Length = 242 | Back alignment and structure |
|
| >pdb|4FFB|C Chain C, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 278 | Back alignment and structure |
|
| >pdb|2QK1|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 244 bits (623), Expect = 4e-73
Identities = 66/255 (25%), Positives = 134/255 (52%)
Query: 1133 NVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLE 1192
K ++ +++ + ++ F+ P E I +L+ + + L +L DFK+ + L+
Sbjct: 9 EDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALD 68
Query: 1193 MLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252
L + + + ++ D+LL+W L+F ++N L+KVLE + + +RD +++
Sbjct: 69 SLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128
Query: 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECV 1312
E + F+P L+ K+G + +R +R++ + + K P +L+ L+SKN R R EC+
Sbjct: 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECL 188
Query: 1313 DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372
++ + I + G L + VA ++D +R AA+N L +K G+ +W+ G+
Sbjct: 189 LVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248
Query: 1373 LTDAQKSMLDDRFKW 1387
+ D KS++++R K
Sbjct: 249 MADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 92.9 bits (230), Expect = 1e-20
Identities = 50/261 (19%), Positives = 104/261 (39%), Gaps = 12/261 (4%)
Query: 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621
KK +++ KL + P++ + ++++ LG+ + QL +K+ L A
Sbjct: 8 NEDKKQRIKEEKQLKLVKWNFQ-APTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAA 66
Query: 622 ISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN----YLAATATK 676
+ SL + + L + ++L++ + + E N +V+E+ + T T
Sbjct: 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLR--FFETNPAALIKVLELCKVIVELIRDTETP 124
Query: 677 FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKV 734
++ V + + + + K R + S+ VGP + L +K KN +
Sbjct: 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK-SKNARQ 183
Query: 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
SE +L + + + G+S LK + + RNA I +L A KF G +
Sbjct: 184 RSECLLVIEYYITNAGISPLKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQM 242
Query: 795 KGFLADVKPALLSALDAEYEK 815
+ S ++ ++
Sbjct: 243 WKAAGRMADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 92.5 bits (229), Expect = 2e-20
Identities = 34/225 (15%), Positives = 76/225 (33%), Gaps = 6/225 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
+S+ + LL K+ +L HK++K A L L D+ + L
Sbjct: 36 ISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLR 95
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGR----YAKEVCDAIAAKCLTGRPKTVEKAQAV 116
++N K L+ ++ + K + + +
Sbjct: 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDI 155
Query: 117 FMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPEL 176
+ ++ ++ A+K+K A+ + V+ ++ G + + K +
Sbjct: 156 VNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPF 215
Query: 177 FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
+D NVR ++ + + ++ G K +M D K +E
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEGDQMWK--AAGRMADKDKSLVE 258
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 2e-16
Identities = 40/228 (17%), Positives = 89/228 (39%), Gaps = 11/228 (4%)
Query: 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD 906
+ + + +L+ L D+K L +++++ ++ + + + + L R ++
Sbjct: 40 QTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFE 98
Query: 907 SNKNLVMATLITLGAVASAM----GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962
+N ++ L + + P ++ + +L G+ K +MR +++
Sbjct: 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNV 158
Query: 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSK--QLTGLSGFPDAAHLLKPASIA 1020
V KM P + AL A R + + G+S + + K +
Sbjct: 159 LSDVVGPLKMTPMLLDALKSKN--ARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPF 215
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1068
+ DK +VR AA +V + G + + K + +L+ ERIK
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEG-DQMWKAAGRMADKDKSLVEERIK 262
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 80.6 bits (198), Expect = 2e-16
Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 10/228 (4%)
Query: 282 LTPLEKSGFWEGVKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIA 340
L K + + + A+ L + ++ R + + + + N A
Sbjct: 43 LGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPA 102
Query: 341 VAVEAIQAIGNLARGLRTH----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396
++ ++ + +R +P LL K E K + S+ + +
Sbjct: 103 ALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV 162
Query: 397 GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND 456
+ + ++K+K RS L + + I + + + + D
Sbjct: 163 VGPLKM--TPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK--SLSVEKTVAPFVGD 218
Query: 457 GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504
VR+AA +VL A K G + + ++ ++ D ++ + E I +G
Sbjct: 219 KDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERIKRTG 265
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 207 bits (527), Expect = 4e-60
Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 21/272 (7%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALC-----DSITDPKDNRIRELGP 55
MS EE+ + LP E+RL +K WK R EA +L L D D
Sbjct: 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPT 58
Query: 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAK------EVCDAIAAKCLTG-RPK 108
LF + + DSN Q++A+ AL + + A + + + A + K LT R
Sbjct: 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT 118
Query: 109 TVEKAQAVFMLWVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPK 167
T ++ + + L+ ++ ++++ + K+ K + A + +++ ++ FG + +
Sbjct: 119 TKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQ 178
Query: 168 ----RILKMLPELFDHQDQNVRASSKGLTLELCRWIG--KDPVKTILFEKMRDTMKKELE 221
+LK +P+L H D+NVR+ + L +E+ + G D ++ ILF+K++ K+L
Sbjct: 179 TFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238
Query: 222 VELVNVSGTARPTRKIRAEQDKELGQELISED 253
V ++ + + +EL ++ E+
Sbjct: 239 KLFAKVGDEPSSSKMLFEWEKRELEKKRSQEE 270
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 98.3 bits (244), Expect = 2e-22
Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 35/270 (12%)
Query: 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSV 639
E+V+ + + LEE +L +WK RLEA L Q
Sbjct: 3 GEEEVDYTTLPLEE---------------RLTYKLWKARLEAYKELNQLFRNSVGDISRD 47
Query: 640 EILVRLVCMLPGW----SEKNVQVQQQVIEVINYL------AATATKFPKKCVVLCLLGI 689
+ + + ++ NV Q+Q I +N L ++ + +
Sbjct: 48 DNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLL 107
Query: 690 SERV---ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV 746
E+ + T+ +M C+ + L + K PK+++ + +
Sbjct: 108 VEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELM 167
Query: 747 EDFGVSHLKLKDLI-DFCKDTG--LQSSAAATRNATIKLLGALHKFVGPDI----KGFLA 799
FG++++ ++ + + K R+ T+ L+ ++K G + +
Sbjct: 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFK 227
Query: 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVR 829
+KP + L + K E +
Sbjct: 228 KLKPIQVKDLHKLFAKVGDEPSSSKMLFEW 257
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 2e-13
Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 25/264 (9%)
Query: 1175 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-----SNTTCLL 1229
L RL +K +++ + L + + DI +I + W SN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 1230 KVLEFLPELFDTLRDEGYSLTE--SEAAVFLPCLVEKS-GHNIEKVREKMRELTKQIVNF 1286
+ + L L D + + + P LVEK + + + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 1287 -YSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV----ASLTA 1341
S T+++ ++ K + + V L+ G L + L
Sbjct: 134 DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG 193
Query: 1342 ERDGEIRKAALNTLATGYKILGEDIWR----YVGKLTDAQKSMLDDRFKWKVREMEKKKE 1397
D +R +N + YK+ G + KL Q L F K
Sbjct: 194 HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLF--------AKVG 245
Query: 1398 GKPGEARAALRRSVRENGSDIAEQ 1421
+P ++ RE +++
Sbjct: 246 DEPSSSKMLFEWEKRELEKKRSQE 269
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 6e-13
Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 16/216 (7%)
Query: 298 KWSERKDAVAELTKLASTKRIAPGD------FTEVCRTLKKLITDVNIAVAVEAIQAI-- 349
W R +A EL +L + + ITD N+ +AI A+
Sbjct: 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNS 81
Query: 350 ----GNLARGLRTHFSGSSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404
+ H P+L+EK L + T + ++ ++
Sbjct: 82 LIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL-DTSITQS 140
Query: 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIET--SSKAAVLKVHKDYVPICMECLNDGTPEVR 462
VE V + K+P + + N V + + V + + + G VR
Sbjct: 141 VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVR 200
Query: 463 DAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 498
+++ I K G ++ ++ +
Sbjct: 201 SQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKD 236
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 4e-09
Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 24/266 (9%)
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF----GGLRGRLYDSNKNLVM 913
L + L WK RLE+ + +N++ + I +++ + DSN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 914 ATLITLGAVASAMGPAVEKSSKG-------VLSDILKCLGDNKKHMRECTLTVLDAWLAA 966
++ L ++ A + K++ + K L ++ + +++ + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 967 VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL-----TGLSGFPDAAHLLKPASIAM 1021
+ + KL + + + + + T ++ LLK
Sbjct: 134 DTSITQSVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA 192
Query: 1022 TDKSSDVRKAAEACIVEILRAGG------QETIEKNLKDIQGPALALILERIKLNGASQV 1075
+VR IVEI + G +E + K LK IQ L + ++ + S
Sbjct: 193 GHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVG-DEPSSS 251
Query: 1076 SMGPTSKSSSKVPKSASNGVSKHGNR 1101
M + K + + H +
Sbjct: 252 KMLFEWEKRELEKKRSQEEEAHHHHH 277
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 199 bits (506), Expect = 1e-57
Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 16/245 (6%)
Query: 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL--TKLASTKRI--APGDFTEV 326
++ IL L K F E + ++KW +R +A+ E + L+ TK++ +++ +
Sbjct: 3 HMASMLPEETILDKLPKD-FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL 61
Query: 327 CRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH--FSGSSRFLLPVLLEKLKEKKPTVA 383
+I D NI A Q++ + L+T + LL++ KEKKP+V
Sbjct: 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVI 121
Query: 384 ESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-- 436
E++ + L + K A D+++D+ +K+K P +R ++
Sbjct: 122 EAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181
Query: 437 -AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495
+ + VPI ++ +ND P +R F A + K GM +++E LD+++R K
Sbjct: 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKK 241
Query: 496 LSEMI 500
+ E +
Sbjct: 242 IEETV 246
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 93.2 bits (231), Expect = 7e-21
Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 20/244 (8%)
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT--GELFGGL 900
LP E I K + + S WK R+E++E + K+++ L G
Sbjct: 6 SMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIY 65
Query: 901 RGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTL 957
+ D+N V ++ + + V + +L + K + E
Sbjct: 66 GHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIR 125
Query: 958 TVL-------DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
L D ++ + M+ + + + R + + +
Sbjct: 126 KALLTICKYYDPLASSGRNEDMLKDILEHMKHKT--PQIRMECTQLFNASMKEEKDGYST 183
Query: 1011 AHLLKPASIA------MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL 1064
+ + D +R +++ G T K L+ + I
Sbjct: 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIE 243
Query: 1065 ERIK 1068
E +K
Sbjct: 244 ETVK 247
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 1e-16
Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 31/249 (12%)
Query: 1166 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-------EVLDILLRWFVL 1218
++ +D R+ S+ +K +V+ LE ++ S K + +L I
Sbjct: 12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ- 70
Query: 1219 QFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRE 1278
+N + + + + D L+ G+S + ++ L++++ V E +R+
Sbjct: 71 --KDANIQAVALAAQSVELICDKLKTPGFS--KDYVSLVFTPLLDRTKEKKPSVIEAIRK 126
Query: 1279 LTKQIVNFYSATKT-------LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLK 1331
I +Y + L ILE ++ K + R+EC L + S +
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186
Query: 1332 SLQ-----IVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFK 1386
L+ IV + + IR + A KI G K + LD+ +
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM---NTFVKTLEH----LDNLKR 239
Query: 1387 WKVREMEKK 1395
K+ E K
Sbjct: 240 KKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 2e-15
Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 20/235 (8%)
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGW--SEKN 656
+P D ++ S+ WK+R+EA+ V + L + + L+ + + N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 657 VQVQQQVIEVINYLAAT--ATKFPKKCVVLCLLGISERVADIKT--RAHAMKCLTTFSEA 712
+Q + + + F K V L + +R + K K L T +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 713 VGPGFIFERLYKIMKD------HKNPKVLSEGILWMVSAVEDFGVSHLKL-----KDLID 761
P R ++KD HK P++ E +++++ + L +++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGP-DIKGFLADVKPALLSALDAEYEK 815
+ + A R + L K G L + ++ +
Sbjct: 195 IVIQI-VNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 6e-08
Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 21/230 (9%)
Query: 12 KKLP--WEDRLLHKNWKVRNEA----NIDLAALCDSITDPKDNRIRELGPLFKKTVADSN 65
KLP +++R+ WK R EA + + + N LG D+N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 66 APVQDKALDALIAYLKA--ADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL 123
A ++ + Y V + + +P +E + + +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 124 -------EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP-----KRILK 171
+ L + + +K+K + + + ++ E ++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 172 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
++ ++ + +R L + G + L E + + +K++E
Sbjct: 195 IVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTL-EHLDNLKRKKIE 243
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 2e-50
Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 6/233 (2%)
Query: 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRT 329
+L+DPVDIL+ + K F++ ++ KW+ RK+++ L KL ++ G++ +
Sbjct: 2 SHMDLLDPVDILSKMPKD-FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSA 60
Query: 330 LKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQ 388
LKK+IT D N+ + A + + LA+GL FS + +P LLEK KEKKP V +L +
Sbjct: 61 LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALRE 120
Query: 389 TLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE-TSSKAAVLKVHKDYV 447
+ A++ +L E + S+ NK P V+S T ++ + T A K+ K
Sbjct: 121 AIDAIYA--STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLT 178
Query: 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500
++ LN+ P VRD++ L + K +G + + + +D ++ K+ E
Sbjct: 179 TSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQ 231
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 8/231 (3%)
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902
D L DI K LE W +R ES+E + K+L + +++ G L L+
Sbjct: 5 DLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKK 63
Query: 903 RLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
+ DSN LV L +A + + + +L+ + K ++ +D
Sbjct: 64 VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP----A 1017
A A+ L+ + +L++ + + ++++ LT LLK
Sbjct: 124 AIYASTSLEAQQESIVESLSNKN--PSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1068
+ + VR ++ + +++ G + + L D+ +A I E +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 3e-20
Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 9/226 (3%)
Query: 1166 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-SN 1224
D++ +D + +L + + + LE+L+K L K L+ K SN
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1225 TTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 1284
+ + L L L + A+ +P L+EK V +RE I
Sbjct: 71 VVLVAMAGKCLALLAKGLAKR----FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIY 126
Query: 1285 NFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE--ISGQLKSL-QIVASLTA 1341
S I+E L +KN + E + + LK L +
Sbjct: 127 ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN 186
Query: 1342 ERDGEIRKAALNTLATGYKILGED-IWRYVGKLTDAQKSMLDDRFK 1386
E D +R ++ L T K++G+ + + + + + + + +
Sbjct: 187 EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 2e-16
Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 7/216 (3%)
Query: 12 KKLP--WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVA-DSNAPV 68
K+P + D+L K W +R E+ L L ++ L KK + DSN +
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73
Query: 69 QDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDV 128
A L K YA ++ K +P V + +++
Sbjct: 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA 133
Query: 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVR 185
+ + +++ NK + +AL+ + K + L + + D VR
Sbjct: 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193
Query: 186 ASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
SS L + +G V +L + +++
Sbjct: 194 DSSAEALGTLIKLMGDKAVTPLL-ADVDPLKMAKIK 228
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 1e-15
Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 12/224 (5%)
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLPGWSEKNV 657
S +P D +L+ W R E++ L + + L+ ++ L ++ + NV
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI--TKDSNV 71
Query: 658 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGP 715
+ + + LA K C+ + E+ + K + + +
Sbjct: 72 VLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 716 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSA 772
E + + + +KNP V SE L++ A+ + L LK L L
Sbjct: 132 EAQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV-KTLNEPD 189
Query: 773 AATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSALDAEYEK 815
R+++ + LG L K +G + LADV P ++ + EK
Sbjct: 190 PTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEK 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.5 bits (208), Expect = 3e-16
Identities = 118/766 (15%), Positives = 233/766 (30%), Gaps = 249/766 (32%)
Query: 748 DF--GVSHLKLKDLI-----DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLAD 800
DF G + KD++ F + D K D
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF--------------------------DCK----D 37
Query: 801 VKPALLSAL-DAEY-----EKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854
V+ S L E K+ GT+ T+ + +E++ KF
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---------------QEEMVQKF 82
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914
V+ + ++K + I+ + QP+ ++ R RLY+ N+
Sbjct: 83 ----VEEVLRINYKFLMSPIKTEQR---------QPSMMTRMYIEQRDRLYNDNQ----- 124
Query: 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK---H-MRECTLTVLDAWLAAVHLD 970
+ V ++ K L L L K + T W+A
Sbjct: 125 -VFAKYNV-----SRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKT----WVAL---- 168
Query: 971 KMVPYVTTALTDAKLGAEGRKDLFD----WLS-----------KQLTGLSGFPDAAHLLK 1015
K+ + D WL+ + L L + +
Sbjct: 169 -------DVCLSYKV-----QCKMDFKIFWLNLKNCNSPETVLEMLQKLL------YQID 210
Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL------ERIK- 1068
P + +D SS+++ + E+ R K ++ L L+L +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYEN----CL-LVLLNVQNAKAWNA 261
Query: 1069 LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQS 1128
N + ++ + T++ V S + H S + P+ + S+
Sbjct: 262 FNLSCKILL--TTRFKQ-VTDFLSAATTTH-----ISLDHHSMTLTPDEVKSL------- 306
Query: 1129 QALLNVKDSNKED--RE---------RMVVRRFKFEDP-RIEQIQELENDMMKYFREDLH 1176
LL D +D RE ++ + + + + + D + E
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSL 363
Query: 1177 RRLLSTDFKKQVDGLEMLQKALPSIRKDI-IEVLDILLRWFVLQFCKSNTTCLLKVLEFL 1235
L +++K D L + + I +L ++ W + ++ V+ L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLI--W-----FDVIKSDVMVVVNKL 411
Query: 1236 PELFDTLRDEGYSLTE---SEAAVFLP-CLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1291
YSL E E+ + +P +E E L + IV+ Y+ K
Sbjct: 412 ---------HKYSLVEKQPKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPK 457
Query: 1292 TLPYILEGLRSKNNRTRIECVDLVGFL---IDHHGAEISGQLKSLQIVASLTAERDGEIR 1348
T ++ +D + I HH LK+++ ER R
Sbjct: 458 TFD---------SDDLIPPYLD--QYFYSHIGHH-------LKNIE-----HPERMTLFR 494
Query: 1349 KAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDD--RFKWKVREMEKKKEGKPGEARAA 1406
L+ ++ L + I R+ +A S+L+ + K + + K A
Sbjct: 495 MVFLD-----FRFLEQKI-RHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNA 547
Query: 1407 LRRSVRENGSDIAE-QSGDVSQSVSGPTLMRRN---YGHSELHVER 1448
+ + + ++ + D+ + LM + + + V+R
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRI----ALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 2e-15
Identities = 100/756 (13%), Positives = 204/756 (26%), Gaps = 249/756 (32%)
Query: 1154 DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR-KDIIEVLDIL 1212
D + Q D++ F + D K D +M + L II D +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF---DCK---DVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 1213 LRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272
LF TL + E F+ ++ N + +
Sbjct: 62 SGTLR--------------------LFWTLLSKQ----EEMVQKFVEEVLRI---NYKFL 94
Query: 1273 REKMRELTKQ---IVNFYSATKTLPYILEGLRSKNNRTRIECVD-----LVGFLIDH--- 1321
++ +Q + Y + Y + +K N +R++ L+ L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNV 153
Query: 1322 --HGAEISGQLKSLQIVASLTAE--RDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQ 1377
G SG K+ + + +++ +KI W + +
Sbjct: 154 LIDGVLGSG--KT-----WVALDVCLSYKVQCKM------DFKIF----WLNLKNCNSPE 196
Query: 1378 KSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRR 1437
+ EM +K L + N + ++ S ++ + R
Sbjct: 197 TVL----------EMLQK-----------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 1438 NYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDP 1497
S+ + L L
Sbjct: 236 RLLKSKPY------ENCL------------L----------------------------- 248
Query: 1498 EGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQ 1557
V+ V++A K F+ SCK L+ T + K++ +
Sbjct: 249 ---VLLN-VQNA---------KAWNAFNL--------SCK----ILLTT-RFKQVTDFLS 282
Query: 1558 ESTLDSLITELLLWLLDERVPHMDDGSQLL-KALNVLMLKILDNADRTSSFVV-LI-NLL 1614
+T + + L D+ LL K L+ + T+ + +I +
Sbjct: 283 AATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 1615 RPLDPSRWPSPASNESFAARNQ-RFSDLVVKCLIKLTKVLQSTIY--------DVD---- 1661
R + W +++ N + + ++ L L ++
Sbjct: 338 RD-GLATW------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 1662 -LDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHEL-----VKLRGAAIKGHLS 1715
L I + + + ++ + + + +P + + + VKL H S
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYAL-HRS 448
Query: 1716 MV----------PIDMKPQPI---ILAYIDLNLETLAAARMLTSTGPGGQT--------- 1753
+V D+ P + ++I L + +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHI---------GHHLKNIEHPERMTLFRMVFLD 499
Query: 1754 -HW-------GDSAANNPTSATNSADAQLKQELAAIFKKIG--DKQTCTIGLYELYRI-T 1802
+ +A N S N+ QLK I ++ I + L +I
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDF-LPKIEE 557
Query: 1803 QLY--PKVDI--FAQLQNASEAFRTYIRDGLAQMEK 1834
L D+ A L EA + Q+++
Sbjct: 558 NLICSKYTDLLRIA-LMAEDEA---IFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 2e-12
Identities = 100/735 (13%), Positives = 204/735 (27%), Gaps = 241/735 (32%)
Query: 242 DKELGQ-ELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
D E G+ + +D+ +D ++ D D+ +
Sbjct: 8 DFETGEHQYQYKDILS-------VFEDAFVDNFDCKDVQDMPKSILSK-----------E 49
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVC----RTLKKLITDV---NIAVAVEAIQAIGNLA 353
E + ++ T R+ F + ++K + +V N + I+
Sbjct: 50 EIDHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 354 RGLRTHFSGSSRFLL---PVLLEKL----KEKKPTVAESLTQ-------TLQAMHKAG-- 397
+ + R L + K + + ++L + + + +G
Sbjct: 106 SMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 398 CLNLVDVVED--VKTSVKNKVPLVRSLTLNWVTF--CIETSSKAAVL-----KVHKDYVP 448
+ +DV V+ + K+ W+ C + +L ++ ++
Sbjct: 165 WV-ALDVCLSYKVQCKMDFKI--------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD-- 506
+D + ++ S+ A + + + +P E + L +V+ K +
Sbjct: 216 -----RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLS 265
Query: 507 ----VATGTSS--ARVQTSGGSVPSVEASESSFVRKSAASMLS---GKRPVSAAPASKKG 557
+ T + + + S++ + S+L RP
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 558 GPVKPS----AKKDGSG------KQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607
P + S + +DG KLT E SL +E PA+
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------IESSLNVLE-------PAEY- 371
Query: 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
++ + + +V S I L+ ++ W + V+
Sbjct: 372 --------RKMFDRL--------SV--FPPSAHIPTILLSLI--WFDVIKSDVMVVVN-- 409
Query: 668 NYLAATATKFPKKCVVLC--------LLGISERV---ADIKTRAHAMKCLTTFSEAVGPG 716
K K +V + I + + + H
Sbjct: 410 --------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS------------- 448
Query: 717 FIFERLYKIMK----DHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-----------LID 761
I + Y I K D P L + HLK + +D
Sbjct: 449 -IVDH-YNIPKTFDSDDLIPPYLDQYFYS-------HIGHHLKNIEHPERMTLFRMVFLD 499
Query: 762 F-------CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE 814
F D+ +A + + L L + K ++ D P L
Sbjct: 500 FRFLEQKIRHDS----TAWNASGSILNTLQQLKFY-----KPYICDNDPK-YERLVNAIL 549
Query: 815 KNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESI 874
F +P + E+ I K+T L +L + D
Sbjct: 550 D--F----LP----KIEENL---------------ICSKYTDLLRIALMAED-------- 576
Query: 875 EAVNKILEEANKRIQ 889
I EEA+K++Q
Sbjct: 577 ---EAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 2e-10
Identities = 74/524 (14%), Positives = 146/524 (27%), Gaps = 186/524 (35%)
Query: 1496 DPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYA 1555
D E KD ++S + FD CK V + + + +
Sbjct: 8 DFETGEHQYQYKD---ILSVFEDAFVDNFD----------CKDVQDMPKSILSKEEIDHI 54
Query: 1556 VQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS-SFVVLINLL 1614
+ S T L W L + ++++ K ++ R + F L++ +
Sbjct: 55 IMSKDAVSG-TLRLFWTL------LSKQEEMVQ-------KFVEEVLRINYKF--LMSPI 98
Query: 1615 RPLDPSRWPSPASNESFAAR------NQRFSDLVV---KCLIKLTKVLQSTIYDVDLDRI 1665
+ R PS + R NQ F+ V + +KL + L R
Sbjct: 99 K--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-------LRP 149
Query: 1666 LQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIK------------GH 1713
+++ + G+ G+ KT + V ++ +
Sbjct: 150 AKNVLID----GV------LGSG-------KTWVALDV-CLSYKVQCKMDFKIFWLNLKN 191
Query: 1714 LSMVPIDMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQ 1773
+ ++ +L ID N + + D ++N +S
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRS-----------------DHSSNIKLR-IHS---- 229
Query: 1774 LKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKV-DIFAQLQNAS--EAF----RTYI- 1825
++ EL + K + Y + +QNA AF + +
Sbjct: 230 IQAELRRLLKS------------------KPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 1826 -RD-GLAQMEKNAAAGRTPSSVPMATPPPAALDNRIGGAIASKV-------LPPE----N 1872
R + + + T + + + L ++ K LP E N
Sbjct: 272 TRFKQVT----DFLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 1873 PLSDQRNERFGVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQSRS 1932
P L I E ++ + DN + + +
Sbjct: 327 PR-------------RLSIIAESIRDG----------------LATWDNWKHVNCDKLTT 357
Query: 1933 SDRASVEN--PAQG-------SVLPMD----EKALSGLQARMER 1963
+S+ PA+ SV P LS + + +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 5e-10
Identities = 87/551 (15%), Positives = 161/551 (29%), Gaps = 148/551 (26%)
Query: 2 SEE-EKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
EE + ++ + RL W + ++ + + + L
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVLRI------NYKFLMSPI 98
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAK-EVCDAIAAKCLTGRPKTVEKAQAVFML 119
+ P I D +AK V R + K + +
Sbjct: 99 KTEQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNVS----------RLQPYLKLRQALL- 145
Query: 120 WVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG------AKIIPPKRILKM 172
EL A +V +D + + K VA V + V Q +F P+ +L+M
Sbjct: 146 --ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 173 LPELFDHQDQNVRASSKGL-TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG-- 229
L +L D N + S ++L + ++ +L K + L V L+NV
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLV-LLNVQNAK 257
Query: 230 -------------TARP---TRKIRAEQDKELGQELISEDVGPGPSEE--------STAD 265
T R T + A + + S + P + D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVK--ATKWSE-RKDAVAELTKL--ASTKRIAP 320
+P E+ + P S E ++ W + +LT + +S + P
Sbjct: 318 LPREV--------LTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 321 GDFTEVCRTLKKLITDVNIAVAV----------EAIQAIGNL--ARGLRTHFSGSSRFLL 368
++ ++ L +I + + + N L S +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN-------------- 414
P + +LK K A+H+ ++VD KT +
Sbjct: 429 PSIYLELKVKLE--------NEYALHR----SIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 415 ------------KVPLVRSLTLN--WV--------TFCIETSSKAAVL---KVHKDYVPI 449
++ L R + L+ ++ T + S L K +K Y+
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-- 534
Query: 450 CMECLNDGTPE 460
C ND E
Sbjct: 535 ---CDNDPKYE 542
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 1e-08
Identities = 89/607 (14%), Positives = 176/607 (28%), Gaps = 171/607 (28%)
Query: 582 EDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI 641
+D+ S +S EEI+ + S D V W + +++ VE V L + +
Sbjct: 39 QDMPKSILSKEEIDHIIMS---KDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKF 93
Query: 642 LVRLVCMLPGWSEKNVQ---VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKT 698
L+ + Q + + IE + L F K V + ++
Sbjct: 94 LMS------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQ 142
Query: 699 RA-----------HAMK-----CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 742
+ + + +K + I W+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVA--LDVC-------------LSYKVQCKMDFKIFWL 187
Query: 743 VSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 799
+ + L+ L ++ + ++ IKL +H + +++ L
Sbjct: 188 -----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHS-IQAELRRLLK 239
Query: 800 DVKP---ALLSALDAEYEK---NPFEG---TVVPKKTVRASESTSSVSSGGSDGLPREDI 850
KP LL L N F ++ T R + T +S+ + + +
Sbjct: 240 S-KPYENCLL-VLLNVQNAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHH 294
Query: 851 SGKFTPT-----LVKSLE-------------SP-----------DWKVRLE-----SIEA 876
S TP L+K L+ +P D + + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 877 VNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL---------GAVASAMG 927
+ I+E + ++PA ++F L ++ + ++ L + V + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 928 P--AVEKSSKG---VLSDI---LKCLGDNKK--HMR--------------ECTLTVLD-- 961
VEK K + I LK +N+ H + LD
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 962 -AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFD--WLSKQL-------TGLSGFPDAA 1011
HL + + R D +L +++ +
Sbjct: 473 FYSHIGHHLKNIEH--------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI-QGPALALILER--IK 1068
LK + D + A I++ L + I D+ + +AL+ E I
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLR---IALMAEDEAIF 580
Query: 1069 LNGASQV 1075
QV
Sbjct: 581 EEAHKQV 587
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 7e-15
Identities = 99/633 (15%), Positives = 198/633 (31%), Gaps = 89/633 (14%)
Query: 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--------MRPLERSIEKLDDVRRNKL 496
+ + ++ L + ++R + L+ IA ++G + L +I D+V L
Sbjct: 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL-AL 68
Query: 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 556
+E + V V + S+ E + VR A L + S
Sbjct: 69 AEQLGTFTTLVG---GPEYVHCLLPPLESLATVEETVVRDKAVESL--RAISHEHSPSDL 123
Query: 557 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV-- 614
P K+ G TS+ + R+ S + A+ ++
Sbjct: 124 EAHFVPLVKRLAGGDWFTSRTSAC--------GLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 615 --WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 672
R A S L + + ++ + EI+ + S++ V+ +E
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA---SDEQDSVRLLAVEA---CVN 229
Query: 673 TATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERL---YKIM 726
A P++ + ++ + A + R T +AVGP L ++ +
Sbjct: 230 IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 289
Query: 727 KDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLL 783
+V + + E+ + + ++ K+ + + ++A ++
Sbjct: 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVI 348
Query: 784 GALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843
L +G D + + P L+ L E + V + + + V
Sbjct: 349 MGLSPILGKDN--TIEHLLPLFLAQLKDECPE-------VRLNIISNLDCVNEV------ 393
Query: 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 903
+ +S P +V+ E W+VRL IE + + + +L
Sbjct: 394 -IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE---KLNSLCMAW 449
Query: 904 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963
L D + A L + G E + ++ +L GD R TL ++
Sbjct: 450 LVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507
Query: 964 LAAVHLD----KMVPYVTTALTD---------AKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
D M+P V D AK + + L
Sbjct: 508 SEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK----IGPILDNS--------TL 555
Query: 1011 AHLLKPA-SIAMTDKSSDVRKAAEACIVEILRA 1042
+KP D+ DV+ A+ + + A
Sbjct: 556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 4e-14
Identities = 71/477 (14%), Positives = 152/477 (31%), Gaps = 51/477 (10%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKAL 73
LP+ ++ +V L + P+ + L P + V+DKA+
Sbjct: 51 LPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE--YVHCLLPPLESLATVEETVVRDKAV 108
Query: 74 DALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVM 133
++L A + + + G T + +
Sbjct: 109 ESLRAISHEHSPSD---LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165
Query: 134 EKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVRASSKG 190
+ +N + L EF + I+ M L + +VR +
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVE 225
Query: 191 LTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 250
+ + + + ++ ++ ++ +R + + R + A++ EL + +
Sbjct: 226 ACVNIAQLLPQEDLEALVMPTLRQAAEDKSW-----------RVRYMVADKFTELQKAV- 273
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
PEI + +LV L K E A V E
Sbjct: 274 ----------------GPEITKTDLVP---AFQNLMKDCEAEVRAAAS-----HKVKEFC 309
Query: 311 KLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370
+ S +++ +K+L++D N V I L+ L + LLP+
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPL 367
Query: 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVT 428
L +LK++ P V ++ L +++ + + ++ + ++ VR + ++
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427
Query: 429 FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485
+ +CM L D +R+AA S L + + G +I
Sbjct: 428 LLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 3e-11
Identities = 59/482 (12%), Positives = 156/482 (32%), Gaps = 52/482 (10%)
Query: 590 SLEEIESRLGS------LIPADTVGQLKSAVWKE---RLEAISSLRQQVEAVQNLDQSVE 640
L I LG L+P L ++ E L L V +
Sbjct: 33 KLSTIALALGVERTRSELLPF-----LTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHC 87
Query: 641 ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRA 700
+L L + + + V+ + +E + ++ + + + + +R+A
Sbjct: 88 LLPPLESLA---TVEETVVRDKAVESLRAISH---EHSPSDLEAHFVPLVKRLAGGDWFT 141
Query: 701 HAMKCLTTFSEAVGPG-----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 755
FS + ++ + P V + + + ++K
Sbjct: 142 SRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK 201
Query: 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815
++I + + R ++ + + + + A V P L A + + +
Sbjct: 202 -SEIIPMFSN-LASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWR 257
Query: 816 NPFEGTVVPKKTVR--ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLES 873
VR ++ + + + E P ++ + +VR +
Sbjct: 258 ------------VRYMVADKFTELQKA----VGPEITKTDLVPAFQNLMKDCEAEVRAAA 301
Query: 874 IEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932
V + E + + ++ ++ + D+N+++ A + ++ +G +
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN 359
Query: 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEG--R 990
+ + +L L L D +R ++ LD + + ++ + A+ + A+ R
Sbjct: 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVR 419
Query: 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
+ +++ L L + D +R+AA + + +++ G+E
Sbjct: 420 LAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHA 479
Query: 1051 NL 1052
+
Sbjct: 480 TI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 4e-11
Identities = 77/461 (16%), Positives = 148/461 (32%), Gaps = 49/461 (10%)
Query: 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669
L++ + RL +I L A+ E+L L + + E V + +
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVL-----LALAEQ 71
Query: 670 LAATATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 726
L T V CLL E +A + R A++ L S P + ++
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV 131
Query: 727 K--DHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIK 781
K + + S S +K + + C D R A
Sbjct: 132 KRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD-----DTPMVRRAAAS 186
Query: 782 LLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841
LG K + D +++ P + E + V V A + + +
Sbjct: 187 KLGEFAKVLELDN--VKSEIIPMFSNLASDEQDS-------VRLLAVEACVNIAQL---- 233
Query: 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
LP+ED+ PTL ++ E W+VR + ++ + I +L +
Sbjct: 234 ---LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT---DLVPAFQ 287
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTV 959
+ D + A + + ++ +L I + + D +H++ +V
Sbjct: 288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347
Query: 960 LDAWLAAV-----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014
+ L+ + ++ ++P L D E R ++ L + + LL
Sbjct: 348 IMG-LSPILGKDNTIEHLLPLFLAQLKD--ECPEVRLNIISNLDCVNEVIGIRQLSQSLL 404
Query: 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055
D VR A + + G E ++ L +
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 3e-10
Identities = 63/466 (13%), Positives = 136/466 (29%), Gaps = 64/466 (13%)
Query: 22 HKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLK 81
VR A L + DN E+ P+F +D V+ A++A + +
Sbjct: 175 DDTPMVRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232
Query: 82 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKN-- 139
+ V + + F + ++ + A +N
Sbjct: 233 LLPQED--LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290
Query: 140 -----KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
+V A + + LS + + +IL + EL +Q+V+++ + +
Sbjct: 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350
Query: 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD--KELGQELISE 252
L +GKD L +K E V I + +G +S+
Sbjct: 351 LSPILGKDNTIEHLLPLFLAQLKDECP----EVRLNI-----ISNLDCVNEVIGIRQLSQ 401
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
+ P + L + KW R + + L
Sbjct: 402 SLLP------------------------AIVELAEDA--------KWRVRLAIIEYMPLL 429
Query: 313 ASTKRIAPGDFTE-VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371
A ++ F E + + D A+ A + L ++ ++P +
Sbjct: 430 A--GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATIIPKV 485
Query: 372 LEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVTF 429
L + + + + + ++ ++ V + V VR +
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 430 CIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
+ + + PI + D +V+ A L ++ +
Sbjct: 546 IGPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 5e-08
Identities = 88/640 (13%), Positives = 179/640 (27%), Gaps = 126/640 (19%)
Query: 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 827
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTIYDEDE------------- 63
Query: 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V + + + + + + P L + VR +++E++ I E
Sbjct: 64 VLLALAEQLGTF--TTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE---- 117
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLV-MATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946
P+ F L RL + + + AV+ +
Sbjct: 118 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE---LRQYFRNLCS 174
Query: 947 DNKKHMRECTLTVLDAWLAAV----HLDKMVPYVTTALTD-----------------AKL 985
D+ +R + L + + +++P + +D L
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
Query: 986 GAEGRKDLFDWLSKQLTG----------LSGFPDAAHLLKPASIA----------MTDKS 1025
E + L +Q F + + P M D
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294
Query: 1026 SDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSS 1085
++VR AA + E + E ++ IL IK S ++
Sbjct: 295 AEVRAAASHKVKEFCENLSADCREN-------VIMSQILPCIKEL---------VSDANQ 338
Query: 1086 KVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERM 1145
V + ++ + I + + + V+ + N+ N+
Sbjct: 339 HVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE------ 392
Query: 1146 VVRRFKFEDPRIEQIQELENDMMKYFRE-------DLHRRLLSTDFKKQVDGL--EMLQK 1196
V+ + + I EL D R L +L F ++++ L L
Sbjct: 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 452
Query: 1197 ALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAV 1256
+ +IR+ L L+ F ++ + +P++ D Y +
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHA---------TIIPKVLAMSGDPNYLHRMT-TLF 502
Query: 1257 FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVG 1316
+ L E G TK + LP +L R +
Sbjct: 503 CINVLSEVCG---------QDITTKHM---------LPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 1317 FLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLA 1356
+ I+ LT ++D +++ A L
Sbjct: 545 KIGPILDNSTLQSEV-KPILEKLTQDQDVDVKYFAQEALT 583
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 6e-08
Identities = 98/634 (15%), Positives = 206/634 (32%), Gaps = 105/634 (16%)
Query: 277 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKL 333
D D L P+ + ++ R +++ +L+ +A A G +E+ L
Sbjct: 4 DGDDSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIAL----ALGVERTRSELLPFLTDT 57
Query: 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAM 393
I D + V + + +G + LLP L ++ V + ++L+A+
Sbjct: 58 IYDEDE-VLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 114
Query: 394 HKAGCLNLVDVVEDVKTSV----KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449
+ + D+ V R+ + C S A V +
Sbjct: 115 --SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQY 168
Query: 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI-----EKLDDVRRNKLSEMIAGSG 504
+D TP VR AA S L AK + + ++ I D ++ + + +
Sbjct: 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD-EQDSVRLLAVEAC 227
Query: 505 GDVATGTSSARVQTSGGSVPSVEA---SESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561
++A ++ +P++ +S VR A +
Sbjct: 228 VNIAQLLPQEDLEAL--VMPTLRQAAEDKSWRVRYMVADKFT------------------ 267
Query: 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621
+L +A E++ ++ +L +K + R A
Sbjct: 268 --------------ELQKA----VGPEITKTDLVPAFQNL--------MKDCEAEVRAAA 301
Query: 622 ISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATK--FP 678
+++ E + + I+ +++ C+ S+ N V+ + VI L+ K
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTI 361
Query: 679 KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHKNPKV 734
+ + L L + + ++ R + + L +E +G + + ++ +D +V
Sbjct: 362 EHLLPLFLAQLKDECPEV--RLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA-KWRV 418
Query: 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
I +M GV + L C L A R A L L + G +
Sbjct: 419 RLAIIEYMPLLAGQLGVEFFD-EKLNSLC-MAWLVDHVYAIREAATSNLKKLVEKFGKE- 475
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854
++ + A P R +T + S+ ++ +
Sbjct: 476 -----WAHATIIPKVLAMSGD--------PNYLHR--MTTLFCINVLSEVCGQDITTKHM 520
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 888
PT+++ P VR +++ KI +
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 6e-07
Identities = 68/474 (14%), Positives = 150/474 (31%), Gaps = 71/474 (14%)
Query: 969 LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDV 1028
+++P++T + D E L + L T + G LL P T + + V
Sbjct: 47 RSELLPFLTDTIYDED---EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV 103
Query: 1029 RKAAEACIVEILRAGGQETIEKNL------------KDIQGPALALILERI-KLNGASQV 1075
R A + I +E + + A L +++ A +
Sbjct: 104 RDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163
Query: 1076 SMGPT-----SKSSSKVPKSASNGVSK----HGNRAISSRVIP--TKGARPESIMSVQDF 1124
+ S + V ++A++ + + + S +IP + A E SV+
Sbjct: 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD-SVRLL 222
Query: 1125 AVQSQALLNVKDSNKEDRERMV--VRRFKFEDP----RIEQIQELENDMMKYFREDLHRR 1178
AV++ + ++ ++ +R+ ED R + + K ++ +
Sbjct: 223 AVEACVNIAQLLPQEDLEALVMPTLRQA-AEDKSWRVRYMVADKFTE-LQKAVGPEITKT 280
Query: 1179 LLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL 1238
L F +++ +R + ++ + + + LP +
Sbjct: 281 DLVPAF------QNLMKDCEAEVRAAASHKVKEFCENLS-----ADCRENVIMSQILPCI 329
Query: 1239 FDTLRDEGYSLTESEAAVF----------------LPCLVEKSGHNIEKVREKMRELTKQ 1282
+ + D + + A+V LP + + +VR +
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389
Query: 1283 IVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVAS 1338
+ + LP I+E R R+ ++ + L G E K + +
Sbjct: 390 VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF-DEKLNSLCMA 448
Query: 1339 LTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREM 1392
+ IR+AA + L + G++ + +M D + R
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDP-NYLHRMT 499
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-05
Identities = 92/596 (15%), Positives = 186/596 (31%), Gaps = 105/596 (17%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKIL-----EEANKRIQPAGTGELFGGLRGRLYDSNKN 910
L+ L + D ++RL SI+ ++ I E + P L +YD ++
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPF--------LTDTIYDEDEV 64
Query: 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA---WLAAV 967
L+ LG + +G + +L + + +R+ + L A +
Sbjct: 65 LLAL-AEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 968 HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA------- 1020
L+ + L DW + + + F + A A
Sbjct: 122 DLEAHFVPLVKRLAGG-----------DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 1021 --MTDKSSDVRKAAEACIVEILRAGGQETIE--------KNLKDIQGP---ALALILERI 1067
+D + VR+AA + + E + + ++ D Q I
Sbjct: 171 NLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230
Query: 1068 KLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
A + + A+ S ++ + + A I D
Sbjct: 231 ----AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK-TDLVPA 285
Query: 1128 SQALLNVKDSNKEDRERM---------VVRRFKFEDPRIEQI----QELENDMMKYFRED 1174
Q L+ KD E R + E+ + QI +EL +D ++ +
Sbjct: 286 FQNLM--KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA 343
Query: 1175 LHRRL--LSTDFKKQV---DGLEMLQKAL----PSIRKDIIEVLDILLRWF-VLQFCKSN 1224
L + LS K L + L P +R +II LD + + Q +S
Sbjct: 344 LASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403
Query: 1225 TTCLLK------------VLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272
+++ ++E++P L L E + + ++ +
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF------DEKLNSLCMAWLVDHVYAI 457
Query: 1273 REKMRELTKQIVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG 1328
RE K++V + +P +L N R+ + + L + G +I+
Sbjct: 458 REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT 517
Query: 1329 QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDR 1384
+ L V + + +R +L IL + ++ + + D+
Sbjct: 518 K-HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS--EVKPILEKLTQDQ 570
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 3e-11
Identities = 41/220 (18%), Positives = 90/220 (40%), Gaps = 22/220 (10%)
Query: 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLR 357
W+ K+A++ + +A T+ + + + L L+ I + E +A G +A+
Sbjct: 46 WTVVKNAISIIMVIAKTR---EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102
Query: 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVP 417
++PVL + +++ L+ + KA + + +V D + + +K
Sbjct: 103 ELVKS----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNR 158
Query: 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477
+ LN++ E S K ++P + L+DG VR +A L +A
Sbjct: 159 EDKLTALNFIEAMGENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213
Query: 478 --MRPLERSIEKLDD----VRR---NKLSEMIAGSGGDVA 508
+ + + +E+L+D V + +S ++ G +
Sbjct: 214 KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 9e-05
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 16/187 (8%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 915
L++ L+ W V +I + I + +P + L L S +
Sbjct: 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQE 89
Query: 916 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY 975
+ M + K ++ + + + L+ +A + M
Sbjct: 90 IAKAFG---QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEE-IAKANPMLMASI 145
Query: 976 V---TTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAA 1032
V + L+ E + +++ G + F L + D VR +A
Sbjct: 146 VRDFMSMLSSKN--REDKLTALNFIEAM--GENSFKYVNPFLPRIINLLHDGDEIVRASA 201
Query: 1033 EACIVEI 1039
+V +
Sbjct: 202 VEALVHL 208
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 62.1 bits (150), Expect = 2e-09
Identities = 88/726 (12%), Positives = 208/726 (28%), Gaps = 111/726 (15%)
Query: 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-GLRTHFSGSSRFLLPVLLEK 374
+ G + I D + + I +A G ++ LLP L
Sbjct: 81 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD----LLPKLCSL 136
Query: 375 LKEKKP-----------TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLT 423
L + + E + L + LN++ + K+ P +RS
Sbjct: 137 LDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM--IPKFLQFFKHSSPKIRSHA 194
Query: 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--MRP- 480
+ V I + ++A ++ ++ D PEVR L + + + P
Sbjct: 195 VACVNQFIISRTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 481 --------LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532
L+R+ ++ ++V + +E
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEFWLT--------------------------LAEQP 287
Query: 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS-- 590
+ L PV + + + D S+ +
Sbjct: 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIIL---------LKGDVEGGSGGDDTISDWNLR 338
Query: 591 ------LEEIESRLGSLIPADTVGQLK----SAVWKERLEAISSLRQQVEA-----VQNL 635
L+ + + + + LK W + I L E + L
Sbjct: 339 KCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 398
Query: 636 DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT-ATKFPKKCVVLCLLGISERVA 694
+ + L++ + S+K V+ ++ A ++ P + + + +R+
Sbjct: 399 PELIPHLIQCL------SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 452
Query: 695 D--IKTRAHAMKCLTTFSEAVGPGF------IFERLYKIMK--DHKNPKVLSEGILWMVS 744
D + + A T E I + L HKN +L + I +
Sbjct: 453 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512
Query: 745 AVEDFGVSHLKLKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803
+V ++ L+ + ++ L ++ + + V
Sbjct: 513 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 572
Query: 804 ALLSAL------DAEYEKNPFEGTVVPKKTVRASEST-SSVSSGGSDGLPREDISGKFTP 856
++ + P + K + + S ++ G + +
Sbjct: 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 632
Query: 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916
+ + ++ +VR S + + + + ++P + L L ++
Sbjct: 633 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNAT 691
Query: 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH--MRECTLTVLDAWLAAVHLDKMVP 974
+G ++ MG ++ VL +++ + + E T + L V ++ P
Sbjct: 692 WAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI-GRLGYVCPQEVAP 750
Query: 975 YVTTAL 980
+ +
Sbjct: 751 MLQQFI 756
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 9e-06
Identities = 56/436 (12%), Positives = 122/436 (27%), Gaps = 48/436 (11%)
Query: 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 636
L + ED S + ++ L +IP + K + K R A++ + Q + +
Sbjct: 152 LQKICEDSAEILDS-DVLDRPLNIMIPK-FLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209
Query: 637 QSV--EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK----KCVVLCLLGIS 690
+ L + ++ +V++ V + L V L
Sbjct: 210 MLHIDSFIENLFALA---GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ 266
Query: 691 ERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750
+ D A + T +E + + K + PK++ + M + D
Sbjct: 267 D--QDENVALEACEFWLTLAE--------QPICKDVLVRHLPKLIPVLVNGMKYSDID-- 314
Query: 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALD 810
+ LK D + R + L L ++ + + LL +
Sbjct: 315 IILLKGDVEGGSGGDDTISDWN--LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 372
Query: 811 AEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 870
+++ G G+ + P L++ L VR
Sbjct: 373 -------------WVVKESGILVLGAIAEGCMQGM--IPYLPELIPHLIQCLSDKKALVR 417
Query: 871 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930
+ +++ + L L R+ DSNK + A + +
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL 477
Query: 931 EKSSKGVLSDILKCLGDNKKHMRECTLTVL--------DAWLAAVHLDKMVPYVTTALTD 982
+L ++ + + ++ ++P +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 983 AKLGAEGRKDLFDWLS 998
K + L + LS
Sbjct: 538 LKDEDKDLFPLLECLS 553
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 62.0 bits (149), Expect = 2e-09
Identities = 139/1073 (12%), Positives = 306/1073 (28%), Gaps = 96/1073 (8%)
Query: 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE 384
+V + + KL+ D N V A++ +G L ++ + ++ L + K + +
Sbjct: 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQLRD 104
Query: 385 SLTQTLQAMHKA------GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----TS 434
+ L+ + G +V + + + + + +++ I +
Sbjct: 105 ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164
Query: 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-------MRPLERSIEK 487
++ H + + L VR L + S G + L + K
Sbjct: 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK 224
Query: 488 LDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547
D + + + A ++ V + +R+
Sbjct: 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284
Query: 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607
+ K + + + ++ E + + + GS
Sbjct: 285 RCPKEVYPHVSTIINICLK--YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD- 341
Query: 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEV 666
WK R A L V + E + L + E+ V+ V
Sbjct: 342 --DDDMSWKVRRAAAKCLDAVVSTRHEMLP--EFYKTVSPALISRFKEREENVKADVFHA 397
Query: 667 INYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 726
++ + + D LT V I + L+K M
Sbjct: 398 Y------------LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN--IVKALHKQM 443
Query: 727 KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAAT--RNATIKLLG 784
K+ K+ K + V + + ++ L ++++ + + L
Sbjct: 444 KE-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502
Query: 785 ALHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDA- 561
Query: 844 GLPREDISGKFTPTLVKSLESPD--WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
+K L++ D +V+ +I + +I+ +
Sbjct: 562 ----TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD-LPNTLQIFL 616
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
RL + L +TL A S + + + + L N++ ++ TL+ LD
Sbjct: 617 ERLKNEITRLTTVKALTLIA-GSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021
+ L A + D L ++ H+ + A +
Sbjct: 676 ILIKNYS--------------DSLTAAMIDAVLDELPPLIS-----ESDMHVSQMAISFL 716
Query: 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1081
T + + IL L+ A+ + + + G + +
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776
Query: 1082 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1141
+ + S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTD 832
Query: 1142 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSI 1201
R++ E + E+ A ++
Sbjct: 833 SIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS------------PSEEVKSAASYAL 880
Query: 1202 RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1261
+ L L + + + L L L + + + L
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYL----LLHSLKEIISSASVVGLKPYVENIWALL 936
Query: 1262 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1321
++ E R + E ++ T LP + L S ++ R V V F I
Sbjct: 937 LKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAVKFTISD 995
Query: 1322 HGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
H I LK+ + + D +R+ AL T + I + +
Sbjct: 996 HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1048
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 49.7 bits (117), Expect = 1e-05
Identities = 59/523 (11%), Positives = 151/523 (28%), Gaps = 65/523 (12%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK---------TVADSN 65
P + +K+ +EA + L I + P K AD +
Sbjct: 523 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 582
Query: 66 APVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCL--TGRPKTVEKAQAVFMLWVEL 123
V+++A+ + + + G + R TV+ + +++
Sbjct: 583 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI 642
Query: 124 EAVDVFLDVME---KAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--KRILKMLPELFD 178
+ V + + ++ + + + + + + +L LP L
Sbjct: 643 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLIS 702
Query: 179 HQDQNVRASSKGLTLELCRWIGK------DPVKTILFEKMRDTMKKELEVELVNVSGTAR 232
D +V + L + + L +R + + + + A
Sbjct: 703 ESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQAL 762
Query: 233 PTRKIRAEQDKELGQELISEDVGPGPS---EESTADVPPEIDEYELVDPVDILTPLEKSG 289
+L + L + ++S + + P + + +
Sbjct: 763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ-- 820
Query: 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349
F + VK ++ ++ +A L+ I E+ + + + + V A A+
Sbjct: 821 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 880
Query: 350 GNLARG----------------------------------LRTHFSGSSRFLLPVLLEKL 375
G+++ G + +LL+
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 940
Query: 376 KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435
+ + + + L + ++ ++ +K + + RS + V F I
Sbjct: 941 ECAEEGTRNVVAECLGKL---TLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP 997
Query: 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
+ + + K+ + ++ L D VR A + A +
Sbjct: 998 QP-IDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS 1039
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 46.6 bits (109), Expect = 9e-05
Identities = 92/709 (12%), Positives = 228/709 (32%), Gaps = 79/709 (11%)
Query: 23 KNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKA 82
+WKVR A L A+ + + + + P + V+ A ++ LK
Sbjct: 345 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404
Query: 83 ADADAGRYAKEVCDAIAAKCLTG----------------RPKTVEKAQAVFMLWVELEAV 126
LT + K+V+ Q F + EL V
Sbjct: 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464
Query: 127 ---------DVFLDVMEKAIKNKVAKAVV--PAIDVMFQALSEFGAKIIPP--KRILKML 173
V + + ++ +K + + + A+ ++ L ++ P + ++ +
Sbjct: 465 LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV 524
Query: 174 PELFDHQDQNVRASSKGLTLELCRWIG----------KDPVKTILFEKM----RDTMKKE 219
+ + + +T +L + I +K + + + +E
Sbjct: 525 VACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQE 584
Query: 220 LEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279
++ ++ G D ++ E + + +T I L +
Sbjct: 585 VKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDL 644
Query: 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDV 337
+ ++ + + + ++ L L + V L LI++
Sbjct: 645 RPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISES 704
Query: 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK--KPTVAESLTQTLQAMHK 395
++ V+ AI + LA+ + S S +L L+ ++ + ++ QA+
Sbjct: 705 DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764
Query: 396 AG--CLNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452
G L +D++ + V + L + + C+ ++A + +
Sbjct: 765 TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQD 824
Query: 453 CLNDGTPE-VRDAAFSVLAAIAKSVGMRP---LERSIEKLDDVRRNKLSEMIAGSGGDVA 508
N + + +R A L + + + L+ I + ++ + + G ++
Sbjct: 825 VKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSIS 884
Query: 509 TGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDG 568
G +P V +S ++ + S K +S+A V+
Sbjct: 885 VGNLPEY-------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENI----- 932
Query: 569 SGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQL----KSAVWKERLEAIS 623
+ L + E E ++ E +L + P + +L S R ++
Sbjct: 933 -----WALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVT 987
Query: 624 SLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 671
+++ + + Q +D ++ + L + ++ V++ + N A
Sbjct: 988 AVKFTISDHPQPIDPLLKNC--IGDFLKTLEDPDLNVRRVALVTFNSAA 1034
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 9e-08
Identities = 48/423 (11%), Positives = 132/423 (31%), Gaps = 42/423 (9%)
Query: 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNL-------DQSVEILV 643
++ R + + + Q+K+ + + + + + E++
Sbjct: 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMK 137
Query: 644 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF-------PKKCVVLCLLGISERVADI 696
+V +E+ V++ + + Y+ +A ++ + G
Sbjct: 138 IMVDNTG--AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK 195
Query: 697 KTRAHAMKCLTTFSEAVGPGFIFERLYKIM-------KDHKNPKVLSEGILWMVSAVEDF 749
R A+ L + E + ++ +V + + + +
Sbjct: 196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255
Query: 750 GVSHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807
+ +K ++ + ++S + T++ + + DI LA + L
Sbjct: 256 -YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE-IDIAYELAQFPQSPLQ 313
Query: 808 ALDAEYEKNPFEGTVVPKKTVRASE----STSSVSSGGSDGL------PREDISGKFTPT 857
+ + + R +E +VS L I
Sbjct: 314 SYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEF 373
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917
+ +++ + +W+ R ++ A I++ +K + + + + D + + T
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAW 433
Query: 918 TLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRE--CTLTVLDAWLAAVHLDKMV 973
+G +A ++ +++ GV+ L L D+ K T+ L LA +
Sbjct: 434 CIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIY 493
Query: 974 PYV 976
+
Sbjct: 494 NFY 496
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 7e-05
Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 21/206 (10%)
Query: 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353
+ R + +E+ + I L K I D A A
Sbjct: 23 LSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQ 82
Query: 354 RGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413
L L+P + K + ++TL ++ +N ++K
Sbjct: 83 SNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISI--VNAVNP--------VAIK 132
Query: 414 NKVP-LVRSL--TLNWVTFC--------IETSSKAAVLKVHKDYVPICMECLNDGTPEVR 462
+P L ++ T W + ++K V + +P+ E + D EV+
Sbjct: 133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVK 192
Query: 463 DAAFSVLAAIAKSVGMRPLERSIEKL 488
AA + + ++V + +ER I L
Sbjct: 193 AAATAAMTKATETVDNKDIERFIPSL 218
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 9e-04
Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 24/270 (8%)
Query: 683 VLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 742
++ ++ + + D + R A++ L I Y+ M+ + P + I
Sbjct: 218 IMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPAL--FAITIE 266
Query: 743 VSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802
+ V+ ++ + C + + A+ + KF +L +
Sbjct: 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326
Query: 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 862
L+ D + + + +A+ + + +DI P + + +
Sbjct: 327 TQTLTKQDENDDDDDWN-------PCKAAGVCLMLLAT----CCEDDIVPHVLPFIKEHI 375
Query: 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV 922
++PDW+ R ++ A ILE + L + D + + T+G +
Sbjct: 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
Query: 923 ASAMGPAVEKSS--KGVLSDILKCLGDNKK 950
+ A +L +++ L +
Sbjct: 436 CELLPEAAINDVYLAPLLQCLIEGLSAEPR 465
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1972 | |||
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 100.0 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 100.0 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 100.0 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.97 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.96 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.96 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.95 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.93 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.93 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.93 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.92 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.92 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.91 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.91 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.9 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 99.89 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.89 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 99.88 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.46 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.43 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.23 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.19 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.17 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.16 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.1 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.07 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.04 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.02 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 98.99 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.99 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.97 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.97 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.96 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.95 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.95 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.89 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.87 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.85 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 98.64 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.64 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.63 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.6 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.59 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.56 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.51 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.49 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.47 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.47 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.43 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.4 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.39 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.39 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.37 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.37 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.36 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.35 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.29 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.29 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 98.22 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.07 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.01 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 97.99 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.99 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.96 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.84 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.83 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 97.83 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.83 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 97.78 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 97.73 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.48 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.47 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.39 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.24 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.93 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 96.9 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 96.76 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.67 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 96.56 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 96.38 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.35 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 96.29 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 96.23 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.01 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 95.9 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 95.72 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 95.7 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 95.66 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 95.49 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 95.36 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.28 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 94.95 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 94.8 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 94.68 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.79 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 93.63 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 93.5 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 93.36 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 93.33 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 93.05 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 92.78 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 92.48 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 92.41 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 92.35 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 92.13 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 92.02 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 91.67 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 90.47 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 90.09 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 89.93 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 89.83 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 88.15 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 88.1 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 87.63 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 86.51 | |
| 1elk_A | 157 | Target of MYB1; superhelix of helices, endocytosis | 86.4 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 86.36 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 86.24 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 85.61 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 83.52 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 83.49 | |
| 1dvp_A | 220 | HRS, hepatocyte growth factor-regulated tyrosine k | 83.3 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 81.74 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 80.78 |
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-56 Score=514.33 Aligned_cols=257 Identities=28% Similarity=0.572 Sum_probs=247.6
Q ss_pred hhccccCCCChHHhhh----hhcccccccCCChhhHHHHHHHHHHhhhHHHHHhhcCccHHHHHHHHHHHHHhcCcchhh
Q 000167 1129 QALLNVKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD 1204 (1972)
Q Consensus 1129 ~~~~~~~~~~k~~R~~----~~~~k~~f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~~~al~~L~~~l~~~~~~ 1204 (1972)
+|++. .+++|++|++ +++++|+|++||+|++++|++||.++++++++.+|||+||++|++|+++|++.+++++++
T Consensus 2 ~~~l~-~~~~K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~ 80 (266)
T 2of3_A 2 ELLLS-DNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRS 80 (266)
T ss_dssp CCSBC-CSSHHHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCcee-cCccHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHH
Confidence 34444 4788999984 567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhCCChHHHHHHHHHHHHHHh
Q 000167 1205 IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 1284 (1972)
Q Consensus 1205 ~i~~lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~Gd~k~~vr~~v~~il~~~~ 1284 (1972)
+++++|++|+|+++||+|+|++|++++||+|..+|..|.+.+|+|++||+.+|||+|++|+||+||.||+.++.+++.++
T Consensus 81 ~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~ 160 (266)
T 2of3_A 81 LLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS 160 (266)
T ss_dssp HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchH---HHHHhhhcCCchHHHHHHHHHHHHHHHH
Q 000167 1285 NFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKI 1361 (1972)
Q Consensus 1285 ~v~~~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~k~l---~~ia~~i~drd~~VR~aAl~~l~~~y~~ 1361 (1972)
.+||++++|+|+++|++|||+|+|+||+++|+++|++||+. +.|++ +.|+++++|+|++||+||+||++++|.+
T Consensus 161 ~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 161 DVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996 67888 9999999999999999999999999999
Q ss_pred hCHHHHHHhhcCCHHHHHhHHHHHHhhh
Q 000167 1362 LGEDIWRYVGKLTDAQKSMLDDRFKWKV 1389 (1972)
Q Consensus 1362 ~G~~v~~~vg~ls~~~~s~l~er~kr~~ 1389 (1972)
+||.||+++|+|++++++||+|||||++
T Consensus 238 ~Gd~v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 238 EGDQMWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp HTTHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhcCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999974
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-34 Score=333.05 Aligned_cols=231 Identities=24% Similarity=0.435 Sum_probs=219.7
Q ss_pred CCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHH-Hh-cCCCCC--CCChHHHHHHHHHHh-cccCHHHHHH
Q 000167 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK-LA-STKRIA--PGDFTEVCRTLKKLI-TDVNIAVAVE 344 (1972)
Q Consensus 270 iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~-l~-~~~ki~--~~~y~~l~~~L~k~l-~D~N~~V~~~ 344 (1972)
.|+||++|||||++||| ++|++.+.++||++|++|++.|.. ++ +++++. .++|.++++.|++.+ +|+|+.|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~-~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLP-KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CchHhhcChhhhhhhCC-hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHH
Confidence 47899999999999999 699999999999999999999999 87 678888 689999999999999 6999999999
Q ss_pred HHHHHHHHHHHhh-hchh-hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC------CChHhHHHHHHHHhhcCC
Q 000167 345 AIQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC------LNLVDVVEDVKTSVKNKV 416 (1972)
Q Consensus 345 A~~~l~~La~~L~-~~f~-~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~------~~l~~il~~l~~~l~~Kn 416 (1972)
||+|++.||++++ +.|. +|+..++|.+|++++|+|+.|++++..|+++++.+ + .+++.+++.|+.+++|||
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~ 159 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKT 159 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999 99999999999999999999999999999999997 4 238999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCh--hHHHHhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHH
Q 000167 417 PLVRSLTLNWVTFCIETSSK--AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (1972)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~--~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~ 493 (1972)
|++|.+++.||.+++..++. ..+.+++ +.++|.+.++++|++++||++|.+|++++++++|++.+.+|++.||+.++
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKR 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHH
Confidence 99999999999999998875 5677899 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000167 494 NKLSEMIAG 502 (1972)
Q Consensus 494 kkI~e~~~~ 502 (1972)
+||++++++
T Consensus 240 ~ki~~~~~~ 248 (249)
T 2qk1_A 240 KKIEETVKT 248 (249)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999975
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=339.35 Aligned_cols=232 Identities=25% Similarity=0.367 Sum_probs=183.4
Q ss_pred CChHHhhhhhhcCCChhhhhcCCChHHHHHHHHHHHHHhhccCCC-----CchhHHhhhhhhHhhhcCCcHHHHHHHHHH
Q 000167 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDP-----KDNRIRELGPLFKKTVADSNAPVQDKALDA 75 (1972)
Q Consensus 1 m~~~~~~~~~~~~lpl~erl~~k~WK~R~~ayeel~~~~~~~~d~-----~~~~~~~~~~~~~k~v~DsN~~vqe~~lea 75 (1972)
|++|++ .||++|||+|||.||+||.|++||++|.+.|+..... ....|..+.+++++++.|+|+.||++|+++
T Consensus 1 m~~~e~--~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~ 78 (278)
T 4ffb_C 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVA 78 (278)
T ss_dssp ------------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcch--hhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 777442 4999999999999999999999999999999865322 122366778899999999999999999999
Q ss_pred HHHHHHHhchhh------hhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh-hhHHHHHHHHhhcCChhhHHH
Q 000167 76 LIAYLKAADADA------GRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV-DVFLDVMEKAIKNKVAKAVVP 147 (1972)
Q Consensus 76 l~~~v~~~~~~~------~~~~~~v~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~~-~~v~~~L~~~~~~KnpKv~~~ 147 (1972)
+..|++..+... ..++..++|.|++||++ +|+++|+.|.++++.++|...+ +.+++.|..++.|||||++.+
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~ 158 (278)
T 4ffb_C 79 LNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAA 158 (278)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHH
T ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHH
Confidence 999998865532 23467799999999987 7999999999999999998654 778899999999999999999
Q ss_pred HHHHHHHHHHHhCCCccChhH----HHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCch--hhHHHhhhChHHHHHHHH
Q 000167 148 AIDVMFQALSEFGAKIIPPKR----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP--VKTILFEKMRDTMKKELE 221 (1972)
Q Consensus 148 ~l~~l~~~l~~fG~~~~~~k~----il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~--l~~~l~~~Lk~~q~keLe 221 (1972)
|+.||.+++.+||.+++++++ +++.++++|+|+|++||++|+.+++++|+|+|+.. +...++++|||+|+++|+
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le 238 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHH
Confidence 999999999999999998765 67788999999999999999999999999999742 223445899999999999
Q ss_pred HHHHhccCCCCCC
Q 000167 222 VELVNVSGTARPT 234 (1972)
Q Consensus 222 ~~f~k~~~~~~P~ 234 (1972)
++|+++.+.++|.
T Consensus 239 ~~f~k~~~~~~~~ 251 (278)
T 4ffb_C 239 KLFAKVGDEPSSS 251 (278)
T ss_dssp HHHSCCCC-----
T ss_pred HHHHhcCCCCCCC
Confidence 9999998765443
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-24 Score=311.84 Aligned_cols=833 Identities=14% Similarity=0.144 Sum_probs=559.6
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCCCCch-hHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHH
Q 000167 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDN-RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (1972)
Q Consensus 15 pl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~-~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~ 93 (1972)
.+.+++.+.+...|.+|.++|.+.++...-..++ ....+...+.+++.|.|..++..|+.++..+++..+. .+...
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~ 86 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 86 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 3678899999999999999999988642111122 3445566677888999999999999999999877654 45667
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh------------hhhHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhC
Q 000167 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA------------VDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFG 160 (1972)
Q Consensus 94 v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~------------~~~v~~~L~~~~~-~KnpKv~~~~l~~l~~~l~~fG 160 (1972)
+++.|++......+.+|..|..++-.+++.-. ...++..|..++. +.++.++.+++.+|.+++..+|
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 88888876444678899999888887776522 3466777778887 6899999999999999999999
Q ss_pred CCccC-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhh
Q 000167 161 AKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRA 239 (1972)
Q Consensus 161 ~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs 239 (1972)
....+ ...+++.+.+.|.|.++.||..|...+..+....++.. +..+-+..+..|.. ... ... |.
T Consensus 167 ~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-----~~~~l~~l~~~L~~----~~~--~~~---r~ 232 (1230)
T 1u6g_C 167 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-----FVDLIEHLLSELSK----NDS--MST---TR 232 (1230)
T ss_dssp SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHH----TCS--SCS---CT
T ss_pred hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHHHHHHhcc----CCc--hhH---HH
Confidence 86554 46799999999999999999999999999998887642 12221222222211 111 111 11
Q ss_pred hhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcC-CCC
Q 000167 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRI 318 (1972)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki 318 (1972)
..-.-.. .- ....+ ..+.+| +..+- +.+...+.+.++..|..++..+..++.. +.-
T Consensus 233 ~a~~~l~-~l-~~~~~------------~~~~~~--------l~~l~-~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 233 TYIQCIA-AI-SRQAG------------HRIGEY--------LEKII-PLVVKFCNVDDDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp THHHHHH-HH-HHHSS------------GGGTTS--------CTTHH-HHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHH-HH-HHHhH------------HHHHHH--------HHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH
Confidence 1110000 00 00000 012222 11111 3455666778888999999988887742 211
Q ss_pred CCCChHHHHHHHHHHhc-------------------------------------ccCHHHHHHHHHHHHHHHHHhhhchh
Q 000167 319 APGDFTEVCRTLKKLIT-------------------------------------DVNIAVAVEAIQAIGNLARGLRTHFS 361 (1972)
Q Consensus 319 ~~~~y~~l~~~L~k~l~-------------------------------------D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (1972)
.......+++.+.+.+. |..-.|+..|+.+++.++...+..|.
T Consensus 290 ~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~ 369 (1230)
T 1u6g_C 290 VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369 (1230)
T ss_dssp CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH
Confidence 01112345555544332 12235788899999999997777799
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC-----------------------ChHhHHHHHHHHhhcCChH
Q 000167 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL-----------------------NLVDVVEDVKTSVKNKVPL 418 (1972)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~-----------------------~l~~il~~l~~~l~~Knp~ 418 (1972)
+|...++|.++..++|....||.++..++..++..... .++.+++.+...+++.+|.
T Consensus 370 ~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~ 449 (1230)
T 1u6g_C 370 EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVK 449 (1230)
T ss_dssp HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHH
Confidence 99999999999999999999999999999888864100 1234555555668999999
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHH
Q 000167 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (1972)
Q Consensus 419 vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~--~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI 496 (1972)
+|..++..+..++...+ ..+.++++.++|.+...|.|.++ +||..+..+++.+....|.+.+.++++.+
T Consensus 450 vr~~~~~~L~~l~~~~~-~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~l-------- 520 (1230)
T 1u6g_C 450 TRQCCFNMLTELVNVLP-GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL-------- 520 (1230)
T ss_dssp HHHHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTT--------
T ss_pred HHHHHHHHHHHHHHHch-hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHH--------
Confidence 99999999999888754 33556789999999999999985 89999888888777666654444433222
Q ss_pred HHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK 576 (1972)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~ 576 (1972)
T Consensus 521 -------------------------------------------------------------------------------- 520 (1230)
T 1u6g_C 521 -------------------------------------------------------------------------------- 520 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccc--------cchhHHHHHHHHhc
Q 000167 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--------LDQSVEILVRLVCM 648 (1972)
Q Consensus 577 ~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~--------~~~~~~~lv~~L~~ 648 (1972)
-+.++..+.+.+|+.|.+++..+..+++..+. ..++.+.++..+..
T Consensus 521 --------------------------lp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 574 (1230)
T 1u6g_C 521 --------------------------VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK 574 (1230)
T ss_dssp --------------------------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH
Confidence 12344556677888888888888888766432 22344444444321
Q ss_pred CCCC--ccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhc---ChhH----HH
Q 000167 649 LPGW--SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV---GPGF----IF 719 (1972)
Q Consensus 649 ~p~~--~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~---~~~~----vl 719 (1972)
.+ .|.+..|.+.++.++..++...+......+..+++.|.+.+.+...|..+..++..++... ..+. ++
T Consensus 575 --~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~ 652 (1230)
T 1u6g_C 575 --RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGV 652 (1230)
T ss_dssp --HHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHH
T ss_pred --HHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHH
Confidence 23 5778889999999999999876643345678888988888887667777777777766532 2233 34
Q ss_pred HHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHH---HhcCCCCCchhHHHHHHHHHHHHHHhhChhHHh
Q 000167 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC---KDTGLQSSAAATRNATIKLLGALHKFVGPDIKG 796 (1972)
Q Consensus 720 ~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l---~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~ 796 (1972)
..+...+ .+.++.+|..++.++..++..++. .++...+.+.+ ..+ +.+.|..++..+..++..|+...++.+..
T Consensus 653 ~~L~~~l-~~~~~~~r~~a~~al~~l~~~~~~-~~~~~~v~~~l~~ll~l-l~~~D~~~~~~~~~~L~~l~~~~~~~~~~ 729 (1230)
T 1u6g_C 653 PILASFL-RKNQRALKLGTLSALDILIKNYSD-SLTAAMIDAVLDELPPL-ISESDMHVSQMAISFLTTLAKVYPSSLSK 729 (1230)
T ss_dssp HHHHHHT-TSCCHHHHHHHHHHHHHHHHHCCT-TCCHHHHHHHHTTCGGG-SCTTCHHHHHHHHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHhcccc-cCCHHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHHHHhCchhHHH
Confidence 4444443 567899999999999999998874 34444444444 344 67888999999999999999887766655
Q ss_pred hhhcccHHHHHHHHH-------------HHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcC
Q 000167 797 FLADVKPALLSALDA-------------EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 863 (1972)
Q Consensus 797 ~L~~lkp~ll~~Le~-------------efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~ 863 (1972)
++..+-|.++..+.. -|..+...++ +. .....+.+.++..+.
T Consensus 730 ~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~------------------------~~-~~~~~ll~~l~~~~~ 784 (1230)
T 1u6g_C 730 ISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT------------------------NN-LGYMDLLRMLTGPVY 784 (1230)
T ss_dssp TTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCC------------------------TT-CSHHHHHHHHSTTTT
T ss_pred hHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCC------------------------CC-CCHHHHHHHHhcccc
Confidence 555555555443321 1111110000 00 001111122222211
Q ss_pred ---C--CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc--chHHHHHHHHHHHHHHHHHcChhhHhhhhh
Q 000167 864 ---S--PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1972)
Q Consensus 864 ---d--~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (1972)
+ ..|..|..+-..+..++.... +.. ++++..+...+.+ .+..+...++.+++.++.... +.+ ...
T Consensus 785 ~~~~~~~~~~~~~~~a~~i~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~--~~~-~~~ 856 (1230)
T 1u6g_C 785 SQSTALTHKQSYYSIAKCVAALTRACP----KEG-PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID--LSG-QLE 856 (1230)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHSC----CCS-HHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSC--CCS-CTH
T ss_pred CCCCccccchhhHHHHHHHHHHHHhcc----hhh-HHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCC--Ccc-ccc
Confidence 1 367778888788887776421 211 3444444444543 344556677777787755422 222 245
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC---CChhhh
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHL 1013 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~---~~~~~l 1013 (1972)
+.+.++..|.|....||.+|..||+.++. .+++.++|.+...+.+. +..|...+.-|.+++...+.. +....+
T Consensus 857 l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~-~~~~~~lp~ll~~l~~~---~~~~~~~l~al~e~i~~~~~~~~~~~~~~i 932 (1230)
T 1u6g_C 857 LKSVILEAFSSPSEEVKSAASYALGSISV-GNLPEYLPFVLQEITSQ---PKRQYLLLHSLKEIISSASVVGLKPYVENI 932 (1230)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHSSCSTTTHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHhHHHhc-cCHHHHHHHHHHHHhcc---chhhHHHHHHHHHHHhcCChhhHHhhHHHH
Confidence 78999999999999999999999999874 35678899999999754 567888888888888754321 122344
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
...++..+.|.+..+|..+.+|++.+....+
T Consensus 933 ~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~ 963 (1230)
T 1u6g_C 933 WALLLKHCECAEEGTRNVVAECLGKLTLIDP 963 (1230)
T ss_dssp HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG
T ss_pred HHHHHHHhcCcchhhHHHHHHHHhhhhccCh
Confidence 4457778888888999999999999987654
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=291.81 Aligned_cols=230 Identities=29% Similarity=0.470 Sum_probs=217.6
Q ss_pred CCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHH
Q 000167 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQA 348 (1972)
Q Consensus 271 D~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~ 348 (1972)
||||+++|+||+++++ ++|++.+.+++|++|++|+..|..++.+ +++...+|.++++.|.+++. |.|..|+..|+.|
T Consensus 2 d~~d~~~~~di~~~l~-~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMP-KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHhCCcccccccCC-HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 7899999999999999 6899999999999999999999998864 78877889999999999995 9999999999999
Q ss_pred HHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHH
Q 000167 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1972)
Q Consensus 349 l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~ 428 (1972)
++.|+.++++.|.+|+..++|.|+++++|+++.||+++..||.+++.. .+++.+++.|..+++++||++|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 789999999999999999999999999999
Q ss_pred HHHHhcChh-HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcC
Q 000167 429 FCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1972)
Q Consensus 429 ~~l~~~~~~-~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (1972)
.++..+.+. .+..+++.++|.+.++++|++++||++|.+|++.++.++|++.+.++++.||+.++++|++++++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a 234 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKA 234 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999888654 345788999999999999999999999999999999999998899999999999999999999874
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-25 Score=313.82 Aligned_cols=911 Identities=15% Similarity=0.137 Sum_probs=563.1
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhc----------------cCCCCch----------------------------hHH
Q 000167 16 WEDRLLHKNWKVRNEANIDLAALCDS----------------ITDPKDN----------------------------RIR 51 (1972)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~----------------~~d~~~~----------------------------~~~ 51 (1972)
+.+.+.+++|+.|..|...|...+.. ..+++.. .+.
T Consensus 53 Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~ 132 (1230)
T 1u6g_C 53 ILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK 132 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHH
Confidence 77778888999998888777655431 1122210 123
Q ss_pred hhhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh---hh
Q 000167 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA---VD 127 (1972)
Q Consensus 52 ~~~~~~~k~v~D-sN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~---~~ 127 (1972)
.+.+.+.+.+.| .|..++..+++++..+++..+.....|...+++.++...-...+.+|..|..++-.+++... .+
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~ 212 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV 212 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CT
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 334445566774 88999999999999999887665556777788887765333678999999999998887632 24
Q ss_pred hHHHHHHHHhhcCC-hhhHHHHHHHHHHHHHHhCCCccC-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhh
Q 000167 128 VFLDVMEKAIKNKV-AKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVK 205 (1972)
Q Consensus 128 ~v~~~L~~~~~~Kn-pKv~~~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~ 205 (1972)
.+++.|...+.+.+ +.++..++.++..+....|....+ +..+++.+...+.+.+..||+.+..++..+.+.+|++ +.
T Consensus 213 ~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~ 291 (1230)
T 1u6g_C 213 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VY 291 (1230)
T ss_dssp THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CH
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-HH
Confidence 56777777765543 578888899999988887763322 4679999999999999999999999999999999875 55
Q ss_pred HHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccC
Q 000167 206 TILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPL 285 (1972)
Q Consensus 206 ~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl 285 (1972)
+++ ..+-|..+ ..+.. .|. + ... .. + + .++.. +.+. .+++.+.+
T Consensus 292 ~~l-~~li~~ll-------~~l~~--d~~-~-~~~-~d----~---~-~~~~~--~~~~-~~~~~~~~------------ 335 (1230)
T 1u6g_C 292 PHV-STIINICL-------KYLTY--DPN-Y-NYD-DE----D---E-DENAM--DADG-GDDDDQGS------------ 335 (1230)
T ss_dssp HHH-HHHHHHHT-------TCCCC--C-----------------------------------------------------
T ss_pred HhH-HHHHHHHH-------HHhCC--CCC-C-CCc-cc----c---c-ccccc--cccc-cccchhhc------------
Confidence 544 33322221 11111 010 0 000 00 0 0 00000 0000 00000000
Q ss_pred cccchhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh------
Q 000167 286 EKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT------ 358 (1972)
Q Consensus 286 ~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~------ 358 (1972)
.+.|....+..|+.|..|++.|..++. .+......|..+++.|...+.|.+..|+..++.++..+...++.
T Consensus 336 --~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 413 (1230)
T 1u6g_C 336 --DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLC 413 (1230)
T ss_dssp -----------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-----
T ss_pred --ccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccccccc
Confidence 012233457889999999999999885 22211223556778888888899999999999999999887643
Q ss_pred -------------chhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC----CChHhHHHHHHHHhhcCCh--HH
Q 000167 359 -------------HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKVP--LV 419 (1972)
Q Consensus 359 -------------~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~----~~l~~il~~l~~~l~~Knp--~v 419 (1972)
.+.++...++|.++..+++....+|.++..++..++.... ..++.+++.|...++++++ .+
T Consensus 414 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v 493 (1230)
T 1u6g_C 414 DPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNL 493 (1230)
T ss_dssp -------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHH
T ss_pred CccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchH
Confidence 4567888999999999999999999999999999987611 2357889999999998875 99
Q ss_pred HHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc------hhHHHhHhhccHHHH
Q 000167 420 RSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM------RPLERSIEKLDDVRR 493 (1972)
Q Consensus 420 R~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge------~~~~~~l~~Ld~~~~ 493 (1972)
|.+++.++..++..+++..+.++++.++|.+..+++|.+..||..|..+++.+++.+|+ ..+.+|++.+-+.-.
T Consensus 494 ~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll 573 (1230)
T 1u6g_C 494 KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTI 573 (1230)
T ss_dssp HHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHH
Confidence 99999999999988887767788999999999999999999999999999999999987 235555555433322
Q ss_pred HHH-------------HHHH----hcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCC
Q 000167 494 NKL-------------SEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 556 (1972)
Q Consensus 494 kkI-------------~e~~----~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k 556 (1972)
..+ -.++ ...|..- . +. -+...+.- ..... .+..
T Consensus 574 ~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~---~--------------~~--~~~~l~~L-~~~l~--~e~~------- 624 (1230)
T 1u6g_C 574 KRLKAADIDQEVKERAISCMGQIICNLGDNL---G--------------SD--LPNTLQIF-LERLK--NEIT------- 624 (1230)
T ss_dssp HHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC---C--------------TH--HHHHHHHH-HHHTT--SSSH-------
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCchh---h--------------hh--HHHHHHHH-HHHhc--cchh-------
Confidence 111 0111 1100000 0 00 00000000 00000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccc
Q 000167 557 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 636 (1972)
Q Consensus 557 ~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~ 636 (1972)
+.+... ....-..+.. +..+ +.. +.. +-+.+...+.+.+|..|..++..|..++...+...
T Consensus 625 ----r~~~~~-al~~i~~~~~--------~~~~--~~~---~~~-i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~ 685 (1230)
T 1u6g_C 625 ----RLTTVK-ALTLIAGSPL--------KIDL--RPV---LGE-GVPILASFLRKNQRALKLGTLSALDILIKNYSDSL 685 (1230)
T ss_dssp ----HHHHHH-HHHHHTTCSS--------CCCC--HHH---HHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC
T ss_pred ----HHHHHH-HHHHHHhCcc--------ccch--HHH---HHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccC
Confidence 000000 0000000000 0001 111 111 22467788899999999999999999998854321
Q ss_pred hhHHHHHHHHhc-CCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhc--
Q 000167 637 QSVEILVRLVCM-LPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV-- 713 (1972)
Q Consensus 637 ~~~~~lv~~L~~-~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~-- 713 (1972)
..+.+..++.. .|.+.|.+..+...+++++..++...+.........+++.++..+.+..++..+.+++..+....
T Consensus 686 -~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 764 (1230)
T 1u6g_C 686 -TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764 (1230)
T ss_dssp -CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHh
Confidence 23445555532 25677889999999999999988654432223445666777766666554443433333222211
Q ss_pred --C----hhHHHHHHHHhh---------------------------------------hhCC----ChHHHHHHHHHHHH
Q 000167 714 --G----PGFIFERLYKIM---------------------------------------KDHK----NPKVLSEGILWMVS 744 (1972)
Q Consensus 714 --~----~~~vl~~l~~~l---------------------------------------~~~K----npKv~~e~l~~L~~ 744 (1972)
. ...+++.++..+ ..-+ ++.++.-++..+.+
T Consensus 765 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 844 (1230)
T 1u6g_C 765 TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGE 844 (1230)
T ss_dssp TCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 1 111222222110 0001 22222233333332
Q ss_pred HHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCC
Q 000167 745 AVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 824 (1972)
Q Consensus 745 ~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p 824 (1972)
+-...+... ...+++.+.++ +.+++..||.+|..+++.+... .+. .+-|.+++.|+.+ .+.++. .
T Consensus 845 ~g~~~~~~~--~~~l~~~~~~~-l~~~~~~Vr~aAa~aLg~l~~~---~~~----~~lp~ll~~l~~~-~~~~~~----~ 909 (1230)
T 1u6g_C 845 VGHHIDLSG--QLELKSVILEA-FSSPSEEVKSAASYALGSISVG---NLP----EYLPFVLQEITSQ-PKRQYL----L 909 (1230)
T ss_dssp HHHHSCCCS--CTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHH---THH----HHHHHHHHHHHSC-GGGHHH----H
T ss_pred hcccCCCcc--cccHHHHHHHH-hCCCCHHHHHHHHHHhHHHhcc---CHH----HHHHHHHHHHhcc-chhhHH----H
Confidence 211111111 23467777787 9999999999999999998732 122 2234555555421 000000 0
Q ss_pred CCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc
Q 000167 825 KKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904 (1972)
Q Consensus 825 ~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L 904 (1972)
...++.- ... .+..+.- .....|.+.|+..+++.+|..|..+.+.+..++... ..++++.|..++
T Consensus 910 l~al~e~--i~~--~~~~~~~---~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~--------~~~l~p~l~~~l 974 (1230)
T 1u6g_C 910 LHSLKEI--ISS--ASVVGLK---PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--------PETLLPRLKGYL 974 (1230)
T ss_dssp HHHHHHH--HHS--SCSTTTH---HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS--------GGGTHHHHTTTS
T ss_pred HHHHHHH--Hhc--CChhhHH---hhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccC--------hHHHHHHHHHHh
Confidence 0000000 000 0000110 112346667777888889999999999999887521 267889999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhc
Q 000167 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTD 982 (1972)
Q Consensus 905 ~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~ 982 (1972)
.|.+..++..++.++..+....+..+.+|+..+++.++..++|.+..||++|..+++.++.+.+ +...++.+.+.|.+
T Consensus 975 ~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~ 1054 (1230)
T 1u6g_C 975 ISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYN 1054 (1230)
T ss_dssp SSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHH
Confidence 9999999998998888888888888899999999999999999999999999999999998875 23334444444421
Q ss_pred ----CC----------------CChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 983 ----AK----------------LGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 983 ----~~----------------~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
++ .+-.+|..+...+...+......-++.+++..+...|.|. .|+|--+...+..++..
T Consensus 1055 ~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~ 1133 (1230)
T 1u6g_C 1055 ETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTL 1133 (1230)
T ss_dssp TTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHS
T ss_pred HhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccCch-HHHHHHHHHHHHHHHhc
Confidence 10 0125788888777777766544334555666677778773 77888888777777665
Q ss_pred cCh
Q 000167 1043 GGQ 1045 (1972)
Q Consensus 1043 ~G~ 1045 (1972)
-+.
T Consensus 1134 ~~~ 1136 (1230)
T 1u6g_C 1134 CPS 1136 (1230)
T ss_dssp CCH
T ss_pred CHH
Confidence 543
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-22 Score=278.12 Aligned_cols=771 Identities=12% Similarity=0.137 Sum_probs=537.6
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh-hhHHHH
Q 000167 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR-YAKEVC 95 (1972)
Q Consensus 17 ~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~-~~~~v~ 95 (1972)
.+...+.+-..|.+|.+.|.+ +. ..|.|..|...+..-..+.+..+...|.-.|-.++++.-..... ....|-
T Consensus 19 l~~~~s~d~~~r~~Ae~~L~~-~~-----~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik 92 (852)
T 4fdd_A 19 LKESQSPDTTIQRTVQQKLEQ-LN-----QYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIK 92 (852)
T ss_dssp HHHHTCSCHHHHHHHHHHHHH-HT-----TSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHHH-HH-----hCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHH
Confidence 344457788899999888874 32 34666555443333346778888888877777666542111111 122344
Q ss_pred HHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh---hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCc------cC
Q 000167 96 DAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV---DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI------IP 165 (1972)
Q Consensus 96 ~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~~---~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~------~~ 165 (1972)
..|++- ++ ..+.+|..+.+++-.++..+.+ ..+++.|...+.+.++.++.+++.+|..+++.++... -.
T Consensus 93 ~~ll~~-l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~ 171 (852)
T 4fdd_A 93 SECLNN-IGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP 171 (852)
T ss_dssp HHHHTT-TTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSC
T ss_pred HHHHHH-HcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcch
Confidence 444443 54 5678999998888888766532 3678888889999999999999999999999887631 12
Q ss_pred hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhh
Q 000167 166 PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKEL 245 (1972)
Q Consensus 166 ~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~ 245 (1972)
+..+++.+..+|.+.+..||..|...+..+....+. .+...+.
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-----~~~~~~~-------------------------------- 214 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-----ALMLHID-------------------------------- 214 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-----HHHTSHH--------------------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH-----HHHHHHH--------------------------------
Confidence 567899999999999999999988776543322110 0000000
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChH
Q 000167 246 GQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFT 324 (1972)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~ 324 (1972)
+++ +.+...+.+.++..|+.+++.|..++. .++.......
T Consensus 215 ----------------------------------~~l-----~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~ 255 (852)
T 4fdd_A 215 ----------------------------------SFI-----ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 255 (852)
T ss_dssp ----------------------------------HHH-----HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH
T ss_pred ----------------------------------HHH-----HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 000 123334556778889999999988874 4433333356
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhchhhhhhhHHHHHHHHh-----------cc-----------CcH
Q 000167 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRFLLPVLLEKL-----------KE-----------KKP 380 (1972)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~~~~~~llp~LL~kl-----------kd-----------kk~ 380 (1972)
.++..+.+.+.|....|+..|+.++..+++. .++.+.+|...++|.++..+ .| ..-
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 7888888999998999999999999998863 44557899999999999998 34 445
Q ss_pred HHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCh
Q 000167 381 TVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459 (1972)
Q Consensus 381 ~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~ 459 (1972)
.||.++..+++.+... +..-+..+++.+...+++.+|.+|..++..|..+.+.++. .+.++++.++|.+..++.|.++
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~ 414 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKA 414 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCH
Confidence 6899999999999876 2222456777777888899999999999999987766543 4557889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccc
Q 000167 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA 539 (1972)
Q Consensus 460 ~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~ 539 (1972)
.||.+|..+++.+...++......+
T Consensus 415 ~Vr~~a~~~l~~l~~~~~~~~~~~~------------------------------------------------------- 439 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWVVSQPPDTY------------------------------------------------------- 439 (852)
T ss_dssp HHHHHHHHHHHHTHHHHHHSCTTTT-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhccchHHHH-------------------------------------------------------
Confidence 9999999999877654432100000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHH
Q 000167 540 SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 619 (1972)
Q Consensus 540 s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl 619 (1972)
.++ +-+.++..|.+.+|..|.
T Consensus 440 ---------------------------------------------------~~~--------ll~~L~~~L~d~~~~vr~ 460 (852)
T 4fdd_A 440 ---------------------------------------------------LKP--------LMTELLKRILDSNKRVQE 460 (852)
T ss_dssp ---------------------------------------------------HHH--------HHHHHHHHHTCSSHHHHH
T ss_pred ---------------------------------------------------HHH--------HHHHHHHHHhCCCHHHHH
Confidence 000 113456777788999999
Q ss_pred HHHHHHHHHHHhcc-ccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC-C-chhhHHHHHHHHHhh---h
Q 000167 620 EAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-F-PKKCVVLCLLGISER---V 693 (1972)
Q Consensus 620 ~a~e~L~~~v~~~~-~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~-~-~~~~~~~il~~LveK---l 693 (1972)
.|...|..+++..+ ...++.+.++..|.. .+++.+.+....+++++..++...+. + ....+..++|.++++ +
T Consensus 461 ~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~--~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l 538 (852)
T 4fdd_A 461 AACSAFATLEEEACTELVPYLAYILDTLVF--AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNML 538 (852)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHH--HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhHhhHhHHHHHHHHHHH--HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhc
Confidence 99999998887743 233344444443321 12222333444566777777765432 2 234677788888853 3
Q ss_pred cc--hhhhHHHHHHHHHHHhhcChhHH--HHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHH-HhcCC
Q 000167 694 AD--IKTRAHAMKCLTTFSEAVGPGFI--FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC-KDTGL 768 (1972)
Q Consensus 694 gd--~K~r~~a~~~L~~l~e~~~~~~v--l~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l-~~~gL 768 (1972)
.| ...+ .+.+++..++...+..++ +..+++ .++..+...+... ..... ... +
T Consensus 539 ~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~------------~~~~~l~~~l~~~---------~~~~~~~~~-~ 595 (852)
T 4fdd_A 539 KDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQ------------RCVNLVQKTLAQA---------MLNNAQPDQ-Y 595 (852)
T ss_dssp CTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHH------------HHHHHHHHHHHHH---------HHHHHCTTT-S
T ss_pred ccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHH------------HHHHHHHHHHHHH---------HHhhcCCcc-c
Confidence 33 2343 677788888877765432 222222 2233333222111 00000 112 4
Q ss_pred CCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcc
Q 000167 769 QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRE 848 (1972)
Q Consensus 769 ~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprv 848 (1972)
+..+..+|..+..+++.+...+|..+.+|+.+
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~------------------------------------------------ 627 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVAR------------------------------------------------ 627 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHT------------------------------------------------
T ss_pred CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcC------------------------------------------------
Confidence 55677899999999999999999877766511
Q ss_pred cccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcCh
Q 000167 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1972)
Q Consensus 849 dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~ 928 (1972)
..+.+-++..+.|+++.+|..+...+..++......+.+. +.++++.|...|.+.+..++..|+.+++.++..+|.
T Consensus 628 ---~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 628 ---SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp ---CCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG
T ss_pred ---CcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH
Confidence 0023445666778889999999999999987665566665 378999999999888888999999999999999999
Q ss_pred hhHhhhhhHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000167 929 AVEKSSKGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1972)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~--k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~ 1000 (1972)
++.+|+..+++.++..+.+. ...+++.+..++..++..++ +..+++.+...|.+.. +.+.|..++..+...
T Consensus 704 ~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~-d~~e~~~a~~~l~~l 782 (852)
T 4fdd_A 704 EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTM 782 (852)
T ss_dssp GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSC-SSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHH
Confidence 99999999999999999875 45799999999999998853 4667777788886533 456799999998888
Q ss_pred hccCCCCCChhhhHHH---HHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHH
Q 000167 1001 LTGLSGFPDAAHLLKP---ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065 (1972)
Q Consensus 1001 l~~~~~~~~~~~ll~p---l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~ 1065 (1972)
+...+.. +...+.. .+....+..++.+..-...+..+-..+|.+....++..|+|..+..+..
T Consensus 783 i~~~p~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 783 ISVNPSG--VIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp HHHCGGG--TGGGHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHhChHh--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHH
Confidence 7766542 2222222 3445688899999999999999999999988999999999998877664
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=259.73 Aligned_cols=227 Identities=15% Similarity=0.186 Sum_probs=208.9
Q ss_pred CCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHH-HHHHccccCC--CCChhhHHHHHHhcc-ccchHHHHHHHH
Q 000167 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMATL 916 (1972)
Q Consensus 841 ~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~-ll~~a~~~I~--~~~~~eL~~~L~~~L-~DsN~~V~~~Al 916 (1972)
..|.++++||.++||++|.+.+.+++|++|++|++.|.. ++++ ++++. ...|++++..|++.+ +|+|..|+..|+
T Consensus 4 ~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 4 MASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp SCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hHhhcChhhhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 478999999999999999999999999999999999999 8875 36776 456899999999999 899999999999
Q ss_pred HHHHHHHHHcC-hhhH-hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc------C-chhhHHHHHHHHhcCCCCh
Q 000167 917 ITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKLGA 987 (1972)
Q Consensus 917 ~~l~~La~alg-~~~~-~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~------~-l~~ll~~l~~~L~~~~~~~ 987 (1972)
++++.|+..++ +.|. +|...++|.++.+++|+++.|++++..|+++|+.++ + ++.+++.|...|+++ +|
T Consensus 83 ~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~ 160 (249)
T 2qk1_A 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP 160 (249)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--Ch
Confidence 99999999999 9999 999999999999999999999999999999999999 7 889999999999987 79
Q ss_pred hHHHHHHHHHHHHhccCCCC-----CCh-hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHH
Q 000167 988 EGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (1972)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~-----~~~-~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~ 1061 (1972)
++|.+++.||.+++...+.. +.+ ..+++.+..+++|.+++||.+|.+||..++.++|++.|.+++..|++.+++
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHH
Confidence 99999999999999887642 234 455666999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 000167 1062 LILERIKLN 1070 (1972)
Q Consensus 1062 ~I~~~l~k~ 1070 (1972)
+|+++++++
T Consensus 241 ki~~~~~~~ 249 (249)
T 2qk1_A 241 KIEETVKTL 249 (249)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999863
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-21 Score=266.90 Aligned_cols=755 Identities=13% Similarity=0.093 Sum_probs=511.1
Q ss_pred hhhh-cCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcC--CcHHHHHHHHHHHHHHHHHhc---------
Q 000167 17 EDRL-LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD--SNAPVQDKALDALIAYLKAAD--------- 84 (1972)
Q Consensus 17 ~erl-~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~D--sN~~vqe~~leal~~~v~~~~--------- 84 (1972)
.+.+ .+.+-..|.+|-+.|.+. ... +.|.| ...+...+.+ .+..+...|...|-.+++..-
T Consensus 10 L~~~~~s~d~~~r~~Ae~~L~~~-~~~---~~~~~---~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~ 82 (861)
T 2bpt_A 10 LENSILSPDQNIRLTSETQLKKL-SND---NFLQF---AGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHH-HHH---CHHHH---HHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHcccCcCHHHHHHHHHHHHHH-Hhh---CHHHH---HHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHH
Confidence 3445 677888999999999774 321 12344 2234444444 367788877777766653210
Q ss_pred --hh-hh-hhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC-ChhhHHHHHHHHHHH
Q 000167 85 --AD-AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK-VAKAVVPAIDVMFQA 155 (1972)
Q Consensus 85 --~~-~~-~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~K-npKv~~~~l~~l~~~ 155 (1972)
.. .. .....+-..|++-+....+.+|..+..++-.++..+-+ ..+++.|...+.+. ++.++..++.++..+
T Consensus 83 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l 162 (861)
T 2bpt_A 83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162 (861)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred hHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 00 11 11234455566653335688888888887777665433 36778888888777 999999999999999
Q ss_pred HHHhCCCc--c--ChhHHHHhhhhhhcCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccC
Q 000167 156 LSEFGAKI--I--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG 229 (1972)
Q Consensus 156 l~~fG~~~--~--~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~ 229 (1972)
...++... + ....+++.+...+.+. +..||..|..++..+..|++.. + .. ......
T Consensus 163 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-----~-~~--~~~~~~---------- 224 (861)
T 2bpt_A 163 CESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-----M-ER--EGERNY---------- 224 (861)
T ss_dssp HHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-----H-TS--HHHHHH----------
T ss_pred HHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-----c-cC--hhHHHH----------
Confidence 99888642 1 2456888888889998 8999999998887776555421 1 00 000000
Q ss_pred CCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHH
Q 000167 230 TARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL 309 (1972)
Q Consensus 230 ~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L 309 (1972)
++ ..+...+.+.+|+.|..+++.|
T Consensus 225 ---------------------------------------------------ll-----~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 225 ---------------------------------------------------LM-----QVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp ---------------------------------------------------HH-----HHHHHHHTCSCHHHHHHHHHHH
T ss_pred ---------------------------------------------------HH-----HHHHHHhcCCCHHHHHHHHHHH
Confidence 00 0122234567899999999999
Q ss_pred HHHhc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh-----------------chhhhhhhHHHH
Q 000167 310 TKLAS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT-----------------HFSGSSRFLLPV 370 (1972)
Q Consensus 310 ~~l~~-~~ki~~~~y~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~-----------------~f~~~~~~llp~ 370 (1972)
..++. .+......+. .++..+...+.|.+..|+..|+.++..++..... .+.++...++|.
T Consensus 249 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 328 (861)
T 2bpt_A 249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN 328 (861)
T ss_dssp HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHH
Confidence 88874 3332222234 6777777888899999999999999999886421 234677899999
Q ss_pred HHHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000167 371 LLEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1972)
Q Consensus 371 LL~klkd-------kk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (1972)
++..+.+ ....+|.++..++..+... +...+..+++.+...+++.+|.+|..++..+..+...+.+..+.++
T Consensus 329 ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~ 408 (861)
T 2bpt_A 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY 408 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred HHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999974 3458999999999998875 2223566778888888899999999999999988766654556778
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhH-HHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCC
Q 000167 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (1972)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~-~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (1972)
++.++|.+...+.|.++.||.++..+++.+...++.... .++
T Consensus 409 l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~------------------------------------- 451 (861)
T 2bpt_A 409 VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH------------------------------------- 451 (861)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-------------------------------------
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-------------------------------------
Confidence 899999999999999999999999988888776653100 000
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhcc
Q 000167 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (1972)
Q Consensus 522 s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l 601 (1972)
.+++
T Consensus 452 ---------------------------------------------------------------------~~~~------- 455 (861)
T 2bpt_A 452 ---------------------------------------------------------------------LPGV------- 455 (861)
T ss_dssp ---------------------------------------------------------------------HHHH-------
T ss_pred ---------------------------------------------------------------------HHHH-------
Confidence 0001
Q ss_pred CcHHHHHhhhcCChHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHhcCCCC--ccchHHHHHHHHHHHHHHHHHc
Q 000167 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-----NLDQSVEILVRLVCMLPGW--SEKNVQVQQQVIEVINYLAATA 674 (1972)
Q Consensus 602 l~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~-----~~~~~~~~lv~~L~~~p~~--~DsN~qV~~~~Le~l~~l~~~~ 674 (1972)
-+.++..|.+. ++.|..+...|..+++..+ ...++.+.++..|.. .+ .|.+..|...+++++..++...
T Consensus 456 -l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~--~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 456 -VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIG--AANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp -HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHH--HHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH--HHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 12344555554 7888888888888777643 122344434433321 12 2555678888999999999876
Q ss_pred CCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCC
Q 000167 675 TKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL 754 (1972)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l 754 (1972)
+.-....+..++|.+++.+.+...-+ ....+. -.....+.++..++.+|..++..+|....
T Consensus 532 ~~~~~~~~~~l~~~l~~~l~~~~~~~---------~~i~~~----------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 592 (861)
T 2bpt_A 532 TDTVAETSASISTFVMDKLGQTMSVD---------ENQLTL----------EDAQSLQELQSNILTVLAAVIRKSPSSVE 592 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTSC---------GGGCCH----------HHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhh---------cccCCh----------hhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 54333455566666665554310000 000000 00012345677788888888887776322
Q ss_pred C-hhhHHHHHHhcCCCCCch-hHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 000167 755 K-LKDLIDFCKDTGLQSSAA-ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1972)
Q Consensus 755 ~-~k~li~~l~~~gL~~sn~-~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~ 832 (1972)
+ ...+++.+... +.+.+. .||..+..+++.+....|..+..|+..+-|.+++.+
T Consensus 593 ~~~~~l~~~l~~~-l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l----------------------- 648 (861)
T 2bpt_A 593 PVADMLMGLFFRL-LEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL----------------------- 648 (861)
T ss_dssp GGHHHHHHHHHHH-HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHH-HccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----------------------
Confidence 2 34566666666 777767 899999999999999999888877765555444433
Q ss_pred ccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccch--HH
Q 000167 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN--KN 910 (1972)
Q Consensus 833 ~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN--~~ 910 (1972)
.+.+|.+|..++..+..++......+.+. ..+++..|...+.|.+ ..
T Consensus 649 ------------------------------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~ 697 (861)
T 2bpt_A 649 ------------------------------NQVDSPVSITAVGFIADISNSLEEDFRRY-SDAMMNVLAQMISNPNARRE 697 (861)
T ss_dssp ------------------------------HCTTSHHHHHHHHHHHHHHHHTGGGGHHH-HHHHHHHHHHHHHCTTCCTT
T ss_pred ------------------------------ccccHHHHHHHHHHHHHHHHHhchhccch-HHHHHHHHHHHhCCccccHh
Confidence 33456678888888888887543333332 3678888888887765 78
Q ss_pred HHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC-----chhhHH
Q 000167 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH-----LDKMVP 974 (1972)
Q Consensus 911 V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-----------~~Vr~Aa~~aL~~i~~~~~-----l~~ll~ 974 (1972)
++..++.+++.++..+|..|.+|+..++|.++..+..+. ..+|.++..++..++..++ +..+++
T Consensus 698 vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~ 777 (861)
T 2bpt_A 698 LKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVG 777 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHH
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999999999999999999999999987432 4689999999999998877 444455
Q ss_pred HHHHHH----hcCC--CChhHHHHHHHHHHHHhccC-CCC--CChh-hhHHHHHhhcC---CCCHHHHHHHHHHHHHHHH
Q 000167 975 YVTTAL----TDAK--LGAEGRKDLFDWLSKQLTGL-SGF--PDAA-HLLKPASIAMT---DKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 975 ~l~~~L----~~~~--~~~~~R~~~l~~L~~~l~~~-~~~--~~~~-~ll~pl~~~L~---D~~~dVR~aA~~~l~~l~~ 1041 (1972)
.+...| .+.. ++..+|..++.++......+ +.. +.+. .++..+++++. +.+..|+..|.-++..+.+
T Consensus 778 ~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 778 TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 444443 3310 14679999999988877766 332 2334 45666777764 6778899999988887765
Q ss_pred Hc
Q 000167 1042 AG 1043 (1972)
Q Consensus 1042 ~~ 1043 (1972)
.+
T Consensus 858 ~~ 859 (861)
T 2bpt_A 858 QL 859 (861)
T ss_dssp HH
T ss_pred Hh
Confidence 33
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-21 Score=266.16 Aligned_cols=707 Identities=10% Similarity=0.082 Sum_probs=494.6
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhhhhh--hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccCh--h-HHHHh
Q 000167 98 IAAKCLTGRPKTVEKAQAVFMLWVELEAVD--VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--K-RILKM 172 (1972)
Q Consensus 98 LveK~l~~k~~~k~~a~~~ll~~~E~~~~~--~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~--k-~il~~ 172 (1972)
+++..++....+|..|.+-+..+-. .++ ..+-.++..+.+.++.++..|...|.+.+..+-. .++. + .+...
T Consensus 18 ~l~~~~s~d~~~r~~Ae~~L~~~~~--~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~-~~~~~~~~~ik~~ 94 (852)
T 4fdd_A 18 LLKESQSPDTTIQRTVQQKLEQLNQ--YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ-NFPNGVTDFIKSE 94 (852)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG-GCCHHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHh--CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHH
Confidence 3444466678889999887765532 233 2233334444678889999999999888764322 2332 2 35667
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhcccc
Q 000167 173 LPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISE 252 (1972)
Q Consensus 173 l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~ 252 (1972)
+...+.+.++.||..+..++.+|.++.+.+.. .
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p------------------------------------------ 127 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNW-----P------------------------------------------ 127 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----T------------------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----H------------------------------------------
Confidence 77788899999999888887777765432100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhc-CCCC-----CCCChHHH
Q 000167 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRI-----APGDFTEV 326 (1972)
Q Consensus 253 ~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki-----~~~~y~~l 326 (1972)
++ - +.+.+.+.+.+|..|..++..|..++. .+.. .......+
T Consensus 128 ---------------------------~l----l-~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~i 175 (852)
T 4fdd_A 128 ---------------------------DL----L-PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 175 (852)
T ss_dssp ---------------------------TH----H-HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHH
T ss_pred ---------------------------HH----H-HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHH
Confidence 00 0 234445566678888899988888763 2221 12235778
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChH
Q 000167 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLV 402 (1972)
Q Consensus 327 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~----~~~l~ 402 (1972)
++.|.+.++|.+..|+..|+.++..+.......+..+...+++.++..+.|....||..+..+|..++... ...+.
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~ 255 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 255 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 88888889999999999999999988876666677788899999999999999999999999999998751 12356
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHHHHh-----------cC-----------CCh
Q 000167 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICMECL-----------ND-----------GTP 459 (1972)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~k~l-----------~D-----------s~~ 459 (1972)
.+++.+...+++..+.+|..++.|+..+.+... +..+.+++..++|.+...+ .| .+.
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 788888888999999999999999988655321 2234466788899999888 34 344
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccc
Q 000167 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA 539 (1972)
Q Consensus 460 ~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~ 539 (1972)
.||.+|..+++.+....|+..+..+
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l------------------------------------------------------- 360 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHI------------------------------------------------------- 360 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHH-------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHH-------------------------------------------------------
Confidence 5677777777777766664322111
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHH
Q 000167 540 SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 619 (1972)
Q Consensus 540 s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl 619 (1972)
-+-+...+.|.+|+.|.
T Consensus 361 ---------------------------------------------------------------~~~l~~~l~~~~~~~R~ 377 (852)
T 4fdd_A 361 ---------------------------------------------------------------LPLLKELLFHHEWVVKE 377 (852)
T ss_dssp ---------------------------------------------------------------HHHHHHHHTCSSHHHHH
T ss_pred ---------------------------------------------------------------HHHHHHHhcCCCHHHHH
Confidence 12233456677999999
Q ss_pred HHHHHHHHHHHhccc-cchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC-CCchhhHHHHHHHHHhhhcc--
Q 000167 620 EAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGISERVAD-- 695 (1972)
Q Consensus 620 ~a~e~L~~~v~~~~~-~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~-~~~~~~~~~il~~LveKlgd-- 695 (1972)
+|+..|+.+.++... .....+.++..+. +.++|.+..|...++.++..++...+ ......+..+++.++..+.|
T Consensus 378 aa~~alg~i~~~~~~~~~~~l~~~l~~l~--~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMIPYLPELIPHLI--QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455 (852)
T ss_dssp HHHHHHHHTTTTTHHHHGGGHHHHHHHHH--HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence 999999988766332 1223444555543 25789999999999999998887543 22345677889999988876
Q ss_pred hhhhHHHHHHHHHHHhhcChh------HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHH--
Q 000167 696 IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCK-- 764 (1972)
Q Consensus 696 ~K~r~~a~~~L~~l~e~~~~~------~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~---~k~li~~l~-- 764 (1972)
.++|..|..+|..+++..+.. .+++.++..+ +....+...-++..+..++...|..... +..+++.+.
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~ 534 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 534 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 468999999999999876543 2344444443 3334444444555555555544532111 233444332
Q ss_pred -hcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCC
Q 000167 765 -DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843 (1972)
Q Consensus 765 -~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d 843 (1972)
.. +.+.++.+| .+.++++.+...+|..+.+|+..+-+.+++.+...+.+..... .. .+
T Consensus 535 ~~~-l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~---------~~----------~~ 593 (852)
T 4fdd_A 535 WNM-LKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN---------AQ----------PD 593 (852)
T ss_dssp HHH-SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHH---------HC----------TT
T ss_pred HHh-cccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cC----------Cc
Confidence 33 677788887 7899999999999999999998887877777776543210000 00 00
Q ss_pred CCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC-hhhHHHHHHhccccchHHHHHHHHHHHHHH
Q 000167 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAV 922 (1972)
Q Consensus 844 ~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~-~~eL~~~L~~~L~DsN~~V~~~Al~~l~~L 922 (1972)
.....+-..|..+++.+..++......+.+.. -..++..+...+.|.+..|+..|+.+++.+
T Consensus 594 -----------------~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l 656 (852)
T 4fdd_A 594 -----------------QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 656 (852)
T ss_dssp -----------------TSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -----------------ccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 00111223577788888888875434443320 046888899999999999999999999999
Q ss_pred HHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHH
Q 000167 923 ASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDW 996 (1972)
Q Consensus 923 a~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~ 996 (1972)
+..++..|.+|+..++|.+++.+.+....+|..|..+++.++.++| +..+++.+...|.++..+..++..++..
T Consensus 657 ~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~ 736 (852)
T 4fdd_A 657 TKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAIT 736 (852)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 9999999999999999999999998889999999999999998885 3556777777777654445677777777
Q ss_pred HHHHhccCCC--CCChhhhHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHcCh
Q 000167 997 LSKQLTGLSG--FPDAAHLLKPASIAMTD-KSSDVRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 997 L~~~l~~~~~--~~~~~~ll~pl~~~L~D-~~~dVR~aA~~~l~~l~~~~G~ 1045 (1972)
+.+.....+. .+++..++.+++..|.+ .+.+.|..|..+|-.++..-+.
T Consensus 737 igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 737 IGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 7766555433 24567777788888865 5566799999999999888655
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-22 Score=268.54 Aligned_cols=552 Identities=18% Similarity=0.185 Sum_probs=375.8
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
.+...+.+.+|+.|..|+..|..++.. +.+ ....++++.|...+ |.+..|+..++.+++.++..++.. .|...+
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~--~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~l 88 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHCL 88 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHH--hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHHH
Confidence 577789999999999999999887631 111 12356778887766 777788899999998877665542 577889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH----hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~----~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1972)
+|.+...+.+....||+++..+|..+... .+.. .+++.+....++.++.+|..++.++..+....+.. ..
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~--~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~~ 162 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VK 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----HH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----HH
Confidence 99998888899999999999999999875 3333 34566656667889999999999999877766543 24
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCC
Q 000167 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1972)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 523 (1972)
+.++|.+..++.|.++.||.+|.++++.+...+|.+.. .+.+-+ .+.+.+... .
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~l~~----~l~~~~~d~---------~---------- 216 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV---KSEIIP----MFSNLASDE---------Q---------- 216 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH---HHTHHH----HHHHHHTCS---------C----------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH---HHHHHH----HHHHHhcCC---------c----------
Confidence 78899999999999999999999999999998885321 111111 111111100 0
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000167 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1972)
Q Consensus 524 s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 603 (1972)
..++..+....+. .. ..++.++. ...+-
T Consensus 217 --------~~vr~~a~~~l~~--------------------------------l~--------~~~~~~~~----~~~~~ 244 (588)
T 1b3u_A 217 --------DSVRLLAVEACVN--------------------------------IA--------QLLPQEDL----EALVM 244 (588)
T ss_dssp --------HHHHTTHHHHHHH--------------------------------HH--------HHSCHHHH----HHHTH
T ss_pred --------HHHHHHHHHHHHH--------------------------------HH--------HhCCHHHH----HHHHH
Confidence 0011000000000 00 00001111 11222
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (1972)
+-+...+.+.+|+.|..+++.|..+....++. ....
T Consensus 245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--------------------------------------------~~~~ 280 (588)
T 1b3u_A 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--------------------------------------------ITKT 280 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--------------------------------------------HHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--------------------------------------------cchh
Confidence 34445555566666666666555544432210 0112
Q ss_pred HHHHHHHhhhcch--hhhHHHHHHHHHHHhhcChh--------HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCC
Q 000167 684 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 753 (1972)
Q Consensus 684 ~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~~~--------~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~ 753 (1972)
.+++.++.-+.|. .+|..+..+|..+++..+.+ .+++.+... .++.+|+||..++.+|..+...+|...
T Consensus 281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~ 359 (588)
T 1b3u_A 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN 359 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhHhH
Confidence 2333344333332 35555556666666555433 223333333 367899999999999988888777531
Q ss_pred CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Q 000167 754 LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES 833 (1972)
Q Consensus 754 l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~ 833 (1972)
....+++.+..+ +.+.++.||.+|...++.+...+|... +.
T Consensus 360 -~~~~l~p~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~----------------------------------- 400 (588)
T 1b3u_A 360 -TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--LS----------------------------------- 400 (588)
T ss_dssp -HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH--HH-----------------------------------
T ss_pred -HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHHHHhcCHHH--HH-----------------------------------
Confidence 134566777776 889999999999999988887766421 00
Q ss_pred cCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHH
Q 000167 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (1972)
Q Consensus 834 ~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~ 913 (1972)
..+.+.+...+.|.+|++|..+++.+..+......... ...+++.+...+.|.+..|+.
T Consensus 401 ------------------~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~Vr~ 459 (588)
T 1b3u_A 401 ------------------QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp ------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGGCSSHHHHH
T ss_pred ------------------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHHHhcCCcHHHHH
Confidence 01223455556788999999999999998864322211 157889999999999999999
Q ss_pred HHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhH
Q 000167 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEG 989 (1972)
Q Consensus 914 ~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l----~~ll~~l~~~L~~~~~~~~~ 989 (1972)
.|+.+++.++..+|..+ +...++|.+...+.|.+..+|.++..++..++..+|. ..++|.+...+.+. ++.+
T Consensus 460 ~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~--~~~V 535 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANV 535 (588)
T ss_dssp HHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHH
T ss_pred HHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC--CchH
Confidence 99999999999999864 4678899999888999999999999999999998874 45777777777766 6899
Q ss_pred HHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCCHHHHHHHHHHHHHH
Q 000167 990 RKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 990 R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
|..++..+.......+.. ...+.+.| +...++|.+.+||.+|..++..+
T Consensus 536 r~~a~~~l~~l~~~~~~~-~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 536 RFNVAKSLQKIGPILDNS-TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 999999998877655431 12245555 55667999999999999998765
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-20 Score=256.35 Aligned_cols=702 Identities=13% Similarity=0.136 Sum_probs=472.6
Q ss_pred hhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCC-cHHHHHHHHHHHHHHHHHhchh---hhhhhHH
Q 000167 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS-NAPVQDKALDALIAYLKAADAD---AGRYAKE 93 (1972)
Q Consensus 18 erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds-N~~vqe~~leal~~~v~~~~~~---~~~~~~~ 93 (1972)
+.|.+.+-+.|..+.+-+...+...... ..|..+.+.+...+.+. |+.+.+.++.++..+++..+.. ...+...
T Consensus 102 ~~l~~~~~~vr~~~~~~l~~i~~~~~p~--~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 179 (861)
T 2bpt_A 102 TALVSIEPRIANAAAQLIAAIADIELPH--GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNN 179 (861)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHGGG--TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHH
T ss_pred HHHCCCchHHHHHHHHHHHHHHHhhCcc--cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Confidence 3466777788888888777766542110 13555666677778888 9999999999999999876543 2445667
Q ss_pred HHHHHHHhhcC-C--ChhHHHHHHHHHHHHHhhh--h------hhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC
Q 000167 94 VCDAIAAKCLT-G--RPKTVEKAQAVFMLWVELE--A------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK 162 (1972)
Q Consensus 94 v~~~LveK~l~-~--k~~~k~~a~~~ll~~~E~~--~------~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~ 162 (1972)
+++.++.- +. . .+.+|..|..++..+++.- . ...+++.|...+.+.+++++..++.+|..++..++..
T Consensus 180 ll~~l~~~-l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 180 ILIAIVQG-AQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHH-HSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHh-hcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777654 44 4 6889999999988765431 1 1346777777788899999999999999999998864
Q ss_pred ccC-hh-HHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCc---ch
Q 000167 163 IIP-PK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR---KI 237 (1972)
Q Consensus 163 ~~~-~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R---~~ 237 (1972)
..+ +. .+++.+...+.+.+..||..|..++..+...... + . ... . +. + ..|.+ +.
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~-~-~~~-----------~--~~--~-~~~~~~~~~~ 318 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID--I-A-YEL-----------A--QF--P-QSPLQSYNFA 318 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH--H-H-HHH-----------H--HC--T-TCSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--h-h-hhh-----------h--hc--c-CCchhhHHHH
Confidence 322 34 6777778889999999999999988777765421 0 0 000 0 00 0 01111 11
Q ss_pred hhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCC
Q 000167 238 RAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR 317 (1972)
Q Consensus 238 rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~k 317 (1972)
+..-. ..-... -...... ++ | ..+.+|..|+.+...|..++..-
T Consensus 319 ~~~~~-~il~~l-l~~l~~~---------~~--d----------------------~~d~~~~~r~~a~~~L~~l~~~~- 362 (861)
T 2bpt_A 319 LSSIK-DVVPNL-LNLLTRQ---------NE--D----------------------PEDDDWNVSMSAGACLQLFAQNC- 362 (861)
T ss_dssp HHHHH-HHHHHH-HHHTTCC---------CC--C-----------------------CCCCCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHH-HHHHHH-HHHHHhc---------cc--c----------------------cccccCcHHHHHHHHHHHHHHHc-
Confidence 00000 000000 0000000 00 0 01245899999999998877421
Q ss_pred CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh-hchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000167 318 IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1972)
Q Consensus 318 i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~-~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (1972)
....+..+++.+...+.|.+..++..|+.+++.++.+.+ ..+.+|...++|.++..++|.++.||.++..++..+...
T Consensus 363 -~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 363 -GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp -GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -cHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 122356788888899999999999999999999998876 678899999999999999999999999999998888765
Q ss_pred -c-----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC---hhHHHHhhhhHHHHHHHHhc--CCChHHHHHH
Q 000167 397 -G-----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLN--DGTPEVRDAA 465 (1972)
Q Consensus 397 -~-----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~---~~~l~~~l~~l~p~l~k~l~--Ds~~~VR~aA 465 (1972)
+ ...+..+++.+..++++. +.+|..++..+..+.+.+. +..+.++++.+++.+.+++. |.++.||.++
T Consensus 442 ~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a 520 (861)
T 2bpt_A 442 VAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASA 520 (861)
T ss_dssp HGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHH
Confidence 1 134778999999999876 9999999999998887754 34566788999999999998 5558999999
Q ss_pred HHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCC
Q 000167 466 FSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGK 545 (1972)
Q Consensus 466 ~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~ 545 (1972)
.++++.+....|+. +.+++..+-+.-.+.+...+.-. .
T Consensus 521 ~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~---------------------------------------~-- 558 (861)
T 2bpt_A 521 FSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVD---------------------------------------E-- 558 (861)
T ss_dssp HHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSC---------------------------------------G--
T ss_pred HHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhh---------------------------------------c--
Confidence 99999999999975 56677665444333333321000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHH
Q 000167 546 RPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSL 625 (1972)
Q Consensus 546 ~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L 625 (1972)
...+.++-+ .....|..+++.|
T Consensus 559 -----------------------------------------~i~~~~~~~-----------------~~~~~~~~~~~~l 580 (861)
T 2bpt_A 559 -----------------------------------------NQLTLEDAQ-----------------SLQELQSNILTVL 580 (861)
T ss_dssp -----------------------------------------GGCCHHHHH-----------------HHHHHHHHHHHHH
T ss_pred -----------------------------------------ccCChhhHH-----------------HHHHHHHHHHHHH
Confidence 000100000 0111233444444
Q ss_pred HHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--h-hhhHHH
Q 000167 626 RQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--I-KTRAHA 702 (1972)
Q Consensus 626 ~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~-K~r~~a 702 (1972)
..++...+. -....+..+++.++.-+.+ . .++..+
T Consensus 581 ~~l~~~~~~------------------------------------------~~~~~~~~l~~~l~~~l~~~~~~~v~~~~ 618 (861)
T 2bpt_A 581 AAVIRKSPS------------------------------------------SVEPVADMLMGLFFRLLEKKDSAFIEDDV 618 (861)
T ss_dssp HHHHHHCGG------------------------------------------GTGGGHHHHHHHHHHHHHSTTGGGTHHHH
T ss_pred HHHHHHhhh------------------------------------------hhHHHHHHHHHHHHHHHccCCCCcHHHHH
Confidence 444433221 0011222333333333322 2 456667
Q ss_pred HHHHHHHHhhcChhH------HHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCc--h
Q 000167 703 MKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSA--A 773 (1972)
Q Consensus 703 ~~~L~~l~e~~~~~~------vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~sn--~ 773 (1972)
..++..+++..+.++ +++.++..+ .++++.++..++..+..++..+|....+ +..+++.+... +.+.+ +
T Consensus 619 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~ 696 (861)
T 2bpt_A 619 FYAISALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM-ISNPNARR 696 (861)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH-HHCTTCCT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHH-hCCccccH
Confidence 777777776655432 344444554 6789999999999999999888742111 34566666665 77665 8
Q ss_pred hHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCccccccc
Q 000167 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGK 853 (1972)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~ 853 (1972)
.||..+..+++.+...+|+.+.+|+..+-|.+++.++. ..+ + .
T Consensus 697 ~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~----~~~--~--------------------~----------- 739 (861)
T 2bpt_A 697 ELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNT----KPE--N--------------------G----------- 739 (861)
T ss_dssp THHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC----CCS--S--------------------S-----------
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc----CCC--C--------------------C-----------
Confidence 99999999999999999999999998887777665521 000 0 0
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHcc---ccCCCCChhhHHHHHHhccccc----hHHHHHHHHHHHHHHHHHc
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEAN---KRIQPAGTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAM 926 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~---~~I~~~~~~eL~~~L~~~L~Ds----N~~V~~~Al~~l~~La~al 926 (1972)
.++.. +..+.+|..+++.+..++...+ ..+.+. ..+++..|...+.|. +..++..|+.+++.|+..+
T Consensus 740 -d~d~~----~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~-~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 740 -TLEAL----DYQIKVLEAVLDAYVGIVAGLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp -SHHHH----HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred -ChHHH----HHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHc
Confidence 00100 1135789999999999997532 123332 367788888888775 7889999999999999999
Q ss_pred -ChhhHhhhh-hHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHhc
Q 000167 927 -GPAVEKSSK-GVLSDILKCLG---DNKKHMRECTLTVLDAWLAAV 967 (1972)
Q Consensus 927 -g~~~~~~~~-~llp~ll~~L~---D~k~~Vr~Aa~~aL~~i~~~~ 967 (1972)
|..|.+|.. .++|.+++.+. +....+++.|.=++..+...+
T Consensus 814 ~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 814 PDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp TTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999 89999999887 455678888877777765543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-19 Score=250.58 Aligned_cols=721 Identities=12% Similarity=0.077 Sum_probs=479.9
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcC--CChhHHHHHHHHHHHHH----------------h
Q 000167 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWV----------------E 122 (1972)
Q Consensus 61 v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~--~k~~~k~~a~~~ll~~~----------------E 122 (1972)
+.+.+..++..|.+.|..|-+.. ...++..|++-..+ ..+.+|..|..++-.++ +
T Consensus 10 ~~s~d~~~r~~A~~~L~~~~~~~-------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 10 TVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHhcC-------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 34566677777777776654321 12233333333222 25677777755544332 1
Q ss_pred hh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCC--ChhHHHHHHHHHHHHHHh
Q 000167 123 LE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRW 198 (1972)
Q Consensus 123 ~~--~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~ 198 (1972)
+. .-..+-+.|+.++.+.++++ ..+..++..+....+.. -....+++.+..++.+. +..||..+..++..+..+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcc-cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 21 12345566788888888899 88999998888766541 13457899999999999 999999999999888877
Q ss_pred hCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000167 199 IGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP 278 (1972)
Q Consensus 199 lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~ 278 (1972)
++++.+ ...-+..+.
T Consensus 161 ~~~~~~-----~~~~~~ll~------------------------------------------------------------ 175 (876)
T 1qgr_A 161 IDPEQL-----QDKSNEILT------------------------------------------------------------ 175 (876)
T ss_dssp SCHHHH-----GGGHHHHHH------------------------------------------------------------
T ss_pred cCHhhH-----HhHHHHHHH------------------------------------------------------------
Confidence 653211 110000000
Q ss_pred ccccccCcccchhhhhccC--ChHHHHHHHHHHHHHhcC--CCCCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Q 000167 279 VDILTPLEKSGFWEGVKAT--KWSERKDAVAELTKLAST--KRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353 (1972)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~--kWkeR~eaL~~L~~l~~~--~ki~~~~y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La 353 (1972)
.+...+.+. +|..|..|++.+..++.. ..+....+ ..+++.+...+.|.+..++..++.|+..++
T Consensus 176 ----------~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 176 ----------AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp ----------HHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ----------HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 111222222 567788888888776531 00111011 136777777778888899999999999999
Q ss_pred HHhhhchhhhhh-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------------------CCC-----hHhHHHH
Q 000167 354 RGLRTHFSGSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------------------CLN-----LVDVVED 407 (1972)
Q Consensus 354 ~~L~~~f~~~~~-~llp~LL~klkdkk~~V~~aa~~aL~al~~~~--------------------~~~-----l~~il~~ 407 (1972)
....+.|.+|.. .+++.++..+++....|+..+.+++..+.... +.. +..+++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 325 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHH
Confidence 999888999999 99999999999999999998888887776530 011 2345555
Q ss_pred HHHHhh-------cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchh
Q 000167 408 VKTSVK-------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1972)
Q Consensus 408 l~~~l~-------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~ 480 (1972)
++..+. +.+|.+|..++..|..+....+.. .++.++|.+...+.|.++.||.+|..+++.+....+.+.
T Consensus 326 ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD----IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG----GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh----hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHH
Confidence 555553 346777777777777666554422 246677777777777778888887777765543322111
Q ss_pred HHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCC
Q 000167 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 560 (1972)
Q Consensus 481 ~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~ 560 (1972)
+.++++
T Consensus 402 ~~~~~~-------------------------------------------------------------------------- 407 (876)
T 1qgr_A 402 LKPLVI-------------------------------------------------------------------------- 407 (876)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 111110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccc---cch
Q 000167 561 KPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQ 637 (1972)
Q Consensus 561 k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~---~~~ 637 (1972)
. +-+.++..|.+.+|..|..|+..|..+...... ...
T Consensus 408 ---------------------------------------~-~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 408 ---------------------------------------Q-AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp ---------------------------------------H-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred ---------------------------------------H-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 1 113456677888899999999999988877432 123
Q ss_pred hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC--------------CCchhhHHHHHHHHHhhhcch-----hh
Q 000167 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--------------KFPKKCVVLCLLGISERVADI-----KT 698 (1972)
Q Consensus 638 ~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~--------------~~~~~~~~~il~~LveKlgd~-----K~ 698 (1972)
..+.++..+.. .+.|. ..|...++.++..++..++ .....++..+++.|+..+.+. .+
T Consensus 448 ~l~~~l~~l~~--~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 448 YLAPLLQCLIE--GLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp THHHHHHHHHH--HTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTH
T ss_pred HHHHHHHHHHH--HHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhH
Confidence 34444443322 35564 7788889999998887643 122356788999998877653 56
Q ss_pred hHHHHHHHHHHHhhcChh------HHHHHHHHhhhh----------CCC----hHHHHHHHHHHHHHHHHhC-CCCC-Ch
Q 000167 699 RAHAMKCLTTFSEAVGPG------FIFERLYKIMKD----------HKN----PKVLSEGILWMVSAVEDFG-VSHL-KL 756 (1972)
Q Consensus 699 r~~a~~~L~~l~e~~~~~------~vl~~l~~~l~~----------~Kn----pKv~~e~l~~L~~~i~~fG-~~~l-~~ 756 (1972)
|..+.++|..++...+.+ .+++.++..+.. ..+ +.++..++.++..++..+| .... -+
T Consensus 525 r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 604 (876)
T 1qgr_A 525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS 604 (876)
T ss_dssp HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH
Confidence 888999999999877643 223333333211 111 5667788888888887766 2111 23
Q ss_pred hhHHHHHHhcCCCCCc--hhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcccccccc
Q 000167 757 KDLIDFCKDTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (1972)
Q Consensus 757 k~li~~l~~~gL~~sn--~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~ 834 (1972)
..+++.+... +.+.+ +.||..+..+++.+....|..+.+|+..+-|.+..
T Consensus 605 ~~l~~~l~~~-l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~--------------------------- 656 (876)
T 1qgr_A 605 DVVMASLLRM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGI--------------------------- 656 (876)
T ss_dssp HHHHHHHHHH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHH-HHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------------------------
Confidence 5677777776 77765 48999999999999988888777766544333333
Q ss_pred CCCCCCCCCCCCcccccccccHHHHHhcCCC-CHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc--chHHH
Q 000167 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNL 911 (1972)
Q Consensus 835 ~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~-~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D--sN~~V 911 (1972)
.+.+. +|.+|..++..+..++......+.+. ..+++..|...+.+ .+..+
T Consensus 657 --------------------------~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~ 709 (876)
T 1qgr_A 657 --------------------------GLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF-CDEVMQLLLENLGNENVHRSV 709 (876)
T ss_dssp --------------------------HHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHTCTTSCGGG
T ss_pred --------------------------HHcCcchHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHhCCccccHHh
Confidence 23333 67889999999999987544444443 37888888888865 46679
Q ss_pred HHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC------------
Q 000167 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------ 968 (1972)
Q Consensus 912 ~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-----------~~Vr~Aa~~aL~~i~~~~~------------ 968 (1972)
+..++.+++.++..+|..|.+|+..++|.++..+.++. ..+|..+..++..++..++
T Consensus 710 ~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~ 789 (876)
T 1qgr_A 710 KPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVML 789 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGG
T ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHH
Confidence 99999999999999999999999999999999997653 3799999999998887753
Q ss_pred chhhHHHHHHHH----hcCCCChhHHHHHHHHHHHHhccCCC-C--CC-hhhhHHHHHh-hcCCCCHHHHHHHHHHHHHH
Q 000167 969 LDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSG-F--PD-AAHLLKPASI-AMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 969 l~~ll~~l~~~L----~~~~~~~~~R~~~l~~L~~~l~~~~~-~--~~-~~~ll~pl~~-~L~D~~~dVR~aA~~~l~~l 1039 (1972)
+..+++.+...+ .++..+..+|..++..|.......+. . +. ...++.+++. ++.|.+++||.+|..+++.+
T Consensus 790 ~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 790 VQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp SGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 233556555555 33211467898888887776665543 1 11 2356777777 99999999999999999887
Q ss_pred HH
Q 000167 1040 LR 1041 (1972)
Q Consensus 1040 ~~ 1041 (1972)
.+
T Consensus 870 ~~ 871 (876)
T 1qgr_A 870 RK 871 (876)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=244.08 Aligned_cols=228 Identities=18% Similarity=0.259 Sum_probs=209.0
Q ss_pred CCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHH
Q 000167 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLG 920 (1972)
Q Consensus 842 ~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~-DsN~~V~~~Al~~l~ 920 (1972)
.|.+|++||..+|++.+++.+.|++|++|++|+..|..++..+ ..+....+.+++..|+.++. |.|..|+..|+.+++
T Consensus 4 ~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 4 MDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp HHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhCCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999864 34555557999999999995 999999999999999
Q ss_pred HHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000167 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1972)
Q Consensus 921 ~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~ 1000 (1972)
.|+..+|..|.+|+..++|.++.+++|+++.||++|..+|.+++..++++.++|.+...|+++ +|.+|.+++.||..+
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987 799999999999998
Q ss_pred hccCCCC----CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccC
Q 000167 1001 LTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (1972)
Q Consensus 1001 l~~~~~~----~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~~ 1072 (1972)
+..+... ..+..+++.+..+++|++++||++|..|++.++.++|++.+.+++..|++.++++|.++++++..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8876421 23455566699999999999999999999999999999999999999999999999999999764
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-19 Score=244.43 Aligned_cols=728 Identities=14% Similarity=0.105 Sum_probs=483.0
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcC--CcHHHHHHHHHHHHHHHHHhc--------h-
Q 000167 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD--SNAPVQDKALDALIAYLKAAD--------A- 85 (1972)
Q Consensus 17 ~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~D--sN~~vqe~~leal~~~v~~~~--------~- 85 (1972)
.+.+.+.+-..|.+|-+.|.+.-.. ..|. |...+-..+.+ .+..+...|..+|..++.... .
T Consensus 7 L~~~~s~d~~~r~~A~~~L~~~~~~----~~~~---~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 7 LEKTVSPDRLELEAAQKFLERAAVE----NLPT---FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhc----Chhh---HHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 3455677888999999998553221 1122 33334455545 468899999888888763210 0
Q ss_pred --hhh-hhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHH
Q 000167 86 --DAG-RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQA 155 (1972)
Q Consensus 86 --~~~-~~~~~v~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~l~~~ 155 (1972)
... .....+-..|++- +. ..+.+ ..+..++-.++..+.+ ..+++.|...+.+. ++.++..++.+|..+
T Consensus 80 w~~l~~~~~~~ik~~ll~~-l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHT-LGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHH-TTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHH-hCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 011 1122344445553 44 45556 6667776666655322 46788888888888 999999999999999
Q ss_pred HHHhCCCcc--ChhHHHHhhhhhhcCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCC
Q 000167 156 LSEFGAKII--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (1972)
Q Consensus 156 l~~fG~~~~--~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (1972)
+..++...+ ....+++.+...+.+. +..||..|..++..+..+++.. +... .....+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~-------~~~~~i----------- 218 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-FDKE-------SERHFI----------- 218 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH-HTSH-------HHHHHH-----------
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhH-------HHHHHH-----------
Confidence 987653221 2456788888888887 6899999999888877765531 1000 000000
Q ss_pred CCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHH
Q 000167 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK 311 (1972)
Q Consensus 232 ~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~ 311 (1972)
+ +.+.+.+.+.+|+.|..+++.|..
T Consensus 219 --------------------------------------------------l-----~~l~~~~~~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 219 --------------------------------------------------M-----QVVCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp --------------------------------------------------H-----HHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred --------------------------------------------------H-----HHHHHHcCCCCHHHHHHHHHHHHH
Confidence 0 001111234456778899999888
Q ss_pred Hhc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh------------------h--c-hhhhhhhHH
Q 000167 312 LAS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR------------------T--H-FSGSSRFLL 368 (1972)
Q Consensus 312 l~~-~~ki~~~~y~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~------------------~--~-f~~~~~~ll 368 (1972)
++. .++.....+. .++..+...+.|.+..|+..|+.++..+++... . . ..++...++
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 323 (876)
T 1qgr_A 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (876)
T ss_dssp HHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHh
Confidence 774 4433222234 677777777888888899999999998887531 1 1 224567889
Q ss_pred HHHHHHhc-------cCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000167 369 PVLLEKLK-------EKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1972)
Q Consensus 369 p~LL~klk-------dkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (1972)
|.++..+. |....+|.++..++..+... +..-++.+++.+...+++.+|.+|..++..+..+.....+..+.
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~ 403 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999885 34567999999999999876 21225567777778888999999999999998877766655566
Q ss_pred HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchh-HHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCC
Q 000167 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519 (1972)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~-~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~ 519 (1972)
++++.++|.+..++.|.++.||.+|..+++.+...++... ..+++..
T Consensus 404 ~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~-------------------------------- 451 (876)
T 1qgr_A 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP-------------------------------- 451 (876)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHH--------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHH--------------------------------
Confidence 7789999999999999999999999999998887765320 0001100
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhh
Q 000167 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLG 599 (1972)
Q Consensus 520 ~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~ 599 (1972)
+
T Consensus 452 --------------------------------------------------------------------------~----- 452 (876)
T 1qgr_A 452 --------------------------------------------------------------------------L----- 452 (876)
T ss_dssp --------------------------------------------------------------------------H-----
T ss_pred --------------------------------------------------------------------------H-----
Confidence 0
Q ss_pred ccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhcc---------------ccchhHHHHHHHHhcCCC-CccchHHHHHHH
Q 000167 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ---------------NLDQSVEILVRLVCMLPG-WSEKNVQVQQQV 663 (1972)
Q Consensus 600 ~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~---------------~~~~~~~~lv~~L~~~p~-~~DsN~qV~~~~ 663 (1972)
-+.+...|.+. ++.|..++..|..++...+ ...++.+.++..|...-. ..+.+..+...+
T Consensus 453 ---l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~ 528 (876)
T 1qgr_A 453 ---LQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSA 528 (876)
T ss_dssp ---HHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHH
T ss_pred ---HHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHH
Confidence 02233444442 5666666666666665532 122344444444321100 111123466788
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc-----------------hhhhHHHHHHHHHHHhhcC-hh------HHH
Q 000167 664 IEVINYLAATATKFPKKCVVLCLLGISERVAD-----------------IKTRAHAMKCLTTFSEAVG-PG------FIF 719 (1972)
Q Consensus 664 Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd-----------------~K~r~~a~~~L~~l~e~~~-~~------~vl 719 (1972)
++++..++...+.-....+..+++.+++.+.+ ..++..+..+|..++...+ .. .++
T Consensus 529 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~ 608 (876)
T 1qgr_A 529 YESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVM 608 (876)
T ss_dssp HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHH
T ss_pred HHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHH
Confidence 99999999877654556777888888887763 2246677888888888777 33 234
Q ss_pred HHHHHhhhhCCC--hHHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCC-chhHHHHHHHHHHHHHHhhChhHH
Q 000167 720 ERLYKIMKDHKN--PKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSS-AAATRNATIKLLGALHKFVGPDIK 795 (1972)
Q Consensus 720 ~~l~~~l~~~Kn--pKv~~e~l~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~s-n~~VR~aA~~ll~~Ly~~~G~~l~ 795 (1972)
+.++..+ .+.+ +.++..++.++..++..+|....+ +..+++.+... +.+. ++.||.+|..+++.|.+.+|+.+.
T Consensus 609 ~~l~~~l-~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 686 (876)
T 1qgr_A 609 ASLLRMF-QSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG-LKNYAEYQVCLAAVGLVGDLCRALQSNII 686 (876)
T ss_dssp HHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH-HHHCTTHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHH-HhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444443 3332 578999999999999887754322 45677777776 8776 899999999999999999998777
Q ss_pred hhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHH
Q 000167 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1972)
Q Consensus 796 ~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale 875 (1972)
+++..+-+.+++.+.. .+.+...|..++.
T Consensus 687 ~~~~~i~~~l~~~l~~---------------------------------------------------~~~~~~~~~~~~~ 715 (876)
T 1qgr_A 687 PFCDEVMQLLLENLGN---------------------------------------------------ENVHRSVKPQILS 715 (876)
T ss_dssp HHHHHHHHHHHHHHTC---------------------------------------------------TTSCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHhCC---------------------------------------------------ccccHHhhHHHHH
Confidence 7665544444433311 0012346677888
Q ss_pred HHHHHHHHccccCCCCChhhHHHHHHhccccc-----------hHHHHHHHHHHHHHHHHHcCh----------hhHhhh
Q 000167 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDS-----------NKNLVMATLITLGAVASAMGP----------AVEKSS 934 (1972)
Q Consensus 876 ~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~Ds-----------N~~V~~~Al~~l~~La~alg~----------~~~~~~ 934 (1972)
.+..++...+..+.+. +..+++.|...+.+. ...++..++.++..++..+|. .|.+|+
T Consensus 716 ~l~~i~~~~g~~~~~~-l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 794 (876)
T 1qgr_A 716 VFGDIALAIGGEFKKY-LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRV 794 (876)
T ss_dssp HHHHHHHHHGGGGGGG-HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGH
T ss_pred HHHHHHHHhchhHHHH-HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHH
Confidence 8888876443444443 366777777766543 136888889999999988763 578898
Q ss_pred hhHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc--------hhhHHHHHH-HHhcCCCChhHHHHHHHHHH
Q 000167 935 KGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL--------DKMVPYVTT-ALTDAKLGAEGRKDLFDWLS 998 (1972)
Q Consensus 935 ~~llp~ll~~L~D~--k~~Vr~Aa~~aL~~i~~~~~l--------~~ll~~l~~-~L~~~~~~~~~R~~~l~~L~ 998 (1972)
..+++.+...+.|. ...||.+|..||..++..+|- +.+++.+.. ++.++ ++.+|..+...+.
T Consensus 795 ~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~--~~~~r~~a~~a~~ 867 (876)
T 1qgr_A 795 EFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSK--TNKAKTLARWATK 867 (876)
T ss_dssp HHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcC--CHhHHHHHHHHHH
Confidence 88887777766777 689999999999999999864 234555666 77765 6888877665543
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-22 Score=229.01 Aligned_cols=217 Identities=19% Similarity=0.242 Sum_probs=192.7
Q ss_pred HHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHH
Q 000167 593 EIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 671 (1972)
Q Consensus 593 e~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~-~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~ 671 (1972)
++...+...+++++..+|+|++||.|++|++.|.+.+.+.. .....++.+++|+.. ++.|+|++|..++|+++..++
T Consensus 38 ~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~l--r~~d~N~~v~~~~L~~L~~l~ 115 (266)
T 2of3_A 38 QLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL--RFFETNPAALIKVLELCKVIV 115 (266)
T ss_dssp HHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHH--HTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHHH
Confidence 45567778899999999999999999999999999987632 333446788999864 678999999999999999988
Q ss_pred HHc----CCCchhhHHHHHHHHHhhhcchh--hhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHH
Q 000167 672 ATA----TKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSA 745 (1972)
Q Consensus 672 ~~~----~~~~~~~~~~il~~LveKlgd~K--~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~ 745 (1972)
..+ ..++...+..++|.|++|+||+| +|+.+.++|..+++.++|..++..++.++ .+||+|+|.+|+.|+..+
T Consensus 116 ~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 116 ELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQRSECLLVIEYY 194 (266)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred HHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 765 34677778999999999999986 89999999999999999999999999975 899999999999999999
Q ss_pred HHHhCCCCCChhhHH---HHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcC
Q 000167 746 VEDFGVSHLKLKDLI---DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1972)
Q Consensus 746 i~~fG~~~l~~k~li---~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~ 816 (1972)
++.||.. + ...+ +.+.++ ++|+|++||++|+++++++|+++|+.+..++++++|..++.|++.|...
T Consensus 195 i~~~G~~--~-~~~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 195 ITNAGIS--P-LKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHCSG--G-GGGGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCCC--c-cccccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 9999986 2 3355 777787 9999999999999999999999999999999999999999999999763
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-20 Score=244.57 Aligned_cols=555 Identities=14% Similarity=0.118 Sum_probs=405.4
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHH
Q 000167 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEV 94 (1972)
Q Consensus 15 pl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v 94 (1972)
.+.+.+.|.+|+.|..|...+........ .+..+..+.+.+...+ |.+..++..+.++|..|....+. ..+...+
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~~--~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~l 88 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALALG--VERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGG--PEYVHCL 88 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHSC--HHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTS--GGGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHhC--HHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCc--HHHHHHH
Confidence 46789999999999999999987765432 1223555666666666 78889999999988876655432 1244556
Q ss_pred HHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhhh----hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHH
Q 000167 95 CDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAVD----VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRI 169 (1972)
Q Consensus 95 ~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~~~----~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~i 169 (1972)
++.|. .++. ..+.+|+.|.+++..+++.-.++ .+++.+.....+.++.++..++.++..+...+|.. ..+.+
T Consensus 89 l~~L~-~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--~~~~l 165 (588)
T 1b3u_A 89 LPPLE-SLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--VKAEL 165 (588)
T ss_dssp HHHHH-HHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--HHHHH
T ss_pred HHHHH-HHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH--HHHHH
Confidence 66664 3444 57899999999999988764333 33444445556788999999999888776655532 14568
Q ss_pred HHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhc
Q 000167 170 LKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQEL 249 (1972)
Q Consensus 170 l~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a 249 (1972)
++.+..++.|.++.||..|...+..+...+|.+. ....+-
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~l~------------------------------------ 205 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN----VKSEII------------------------------------ 205 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH----HHHTHH------------------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHh----HHHHHH------------------------------------
Confidence 8888899999999999999999998888877421 000000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHH
Q 000167 250 ISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCR 328 (1972)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~-~y~~l~~ 328 (1972)
+.+...+.+.+|..|..|++.|..++..- .+. ....+++
T Consensus 206 --------------------------------------~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~ 245 (588)
T 1b3u_A 206 --------------------------------------PMFSNLASDEQDSVRLLAVEACVNIAQLL--PQEDLEALVMP 245 (588)
T ss_dssp --------------------------------------HHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CHHHHHHHTHH
T ss_pred --------------------------------------HHHHHHhcCCcHHHHHHHHHHHHHHHHhC--CHHHHHHHHHH
Confidence 12333345667888999999888876421 111 1345778
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC------ChH
Q 000167 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL------NLV 402 (1972)
Q Consensus 329 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~------~l~ 402 (1972)
.+...+.|.+..|+..|+.+++.++..++.. .+...++|.++..++|..+.||.++..++..+...... .++
T Consensus 246 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 8888888999999999999999999988764 35677899999999999999999999999999876111 245
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHH
Q 000167 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482 (1972)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~ 482 (1972)
.+++.+...+++.+|.+|..++.+|..+....+... ..+.++|.+..++.|.+++||.++..+++.+...+|...+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~- 399 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDN---TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL- 399 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH---HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHH-
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHH-
Confidence 688888888899999999999999888776655432 2467889999999999999999999999988887764210
Q ss_pred HhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000167 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 562 (1972)
Q Consensus 483 ~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~ 562 (1972)
. ...
T Consensus 400 --~-----------~~~--------------------------------------------------------------- 403 (588)
T 1b3u_A 400 --S-----------QSL--------------------------------------------------------------- 403 (588)
T ss_dssp --H-----------HHH---------------------------------------------------------------
T ss_pred --H-----------HHH---------------------------------------------------------------
Confidence 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHH
Q 000167 563 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEIL 642 (1972)
Q Consensus 563 g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~l 642 (1972)
-+.+...+.+.+|+.|..+++.+..+....+... ..+.+
T Consensus 404 ----------------------------------------lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l 442 (588)
T 1b3u_A 404 ----------------------------------------LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF-FDEKL 442 (588)
T ss_dssp ----------------------------------------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG-CCHHH
T ss_pred ----------------------------------------HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH-HHHHH
Confidence 0123344567899999999999998877643321 11233
Q ss_pred HHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcChhHHHH
Q 000167 643 VRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFE 720 (1972)
Q Consensus 643 v~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~~~vl~ 720 (1972)
+..+.. .+.|.+..|...++..+..++..++. ......++|.|+.-+.| ..+|..+..++..+++.++.+....
T Consensus 443 ~~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~ 518 (588)
T 1b3u_A 443 NSLCMA--WLVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTK 518 (588)
T ss_dssp HHHHHH--GGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 444332 46788889999999999998886542 12346778888765555 3579999999999999888765555
Q ss_pred HHHHhh---hhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 000167 721 RLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1972)
Q Consensus 721 ~l~~~l---~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~L 786 (1972)
.+++.+ ..+.++.||..++.+|..+...+|...+ ...+++.+..+ +.+.|+.||..|..++..+
T Consensus 519 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~p~l~~l-~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 519 HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL-QSEVKPILEKL-TQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH-HHHHHHHHHHH-TTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh-HHHHHHHHHHH-cCCCchhHHHHHHHHHHHh
Confidence 555443 3578899999999999999987765321 14577777777 8999999999999998765
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-23 Score=243.59 Aligned_cols=218 Identities=17% Similarity=0.216 Sum_probs=164.9
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHH------HHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC---
Q 000167 606 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI------LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK--- 676 (1972)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~------lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~--- 676 (1972)
+.++|.|++||+|++|+++|.+++..........+. +...+.+ .++|+|++|+..+++++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk--~l~DsN~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQ--YITDSNVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHH--HTTCSSHHHHHHHHHHHHHHHTTCC---C
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 668999999999999999999999874332111111 1222321 46899999999999999999986542
Q ss_pred ---CchhhHHHHHHHHHhh-hcchh--hhHHHHHHHHHHHhhcCh-hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHh
Q 000167 677 ---FPKKCVVLCLLGISER-VADIK--TRAHAMKCLTTFSEAVGP-GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF 749 (1972)
Q Consensus 677 ---~~~~~~~~il~~LveK-lgd~K--~r~~a~~~L~~l~e~~~~-~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~f 749 (1972)
+...++..++|.|++| +||.| ++..+.++|..+++...+ ..+++.++.++ ++||||++.+++.||..++.+|
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHh
Confidence 1234678899999999 68875 789999999999997665 56677777764 8999999999999999999999
Q ss_pred CCCCCChhhHH----HHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhH----HhhhhcccHHHHHHHHHHHhcCCCCCC
Q 000167 750 GVSHLKLKDLI----DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI----KGFLADVKPALLSALDAEYEKNPFEGT 821 (1972)
Q Consensus 750 G~~~l~~k~li----~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l----~~~L~~lkp~ll~~Le~efek~~~~~~ 821 (1972)
|...++++..+ +.+.++ ++|+|++||++|+.++++||+|+|+.+ ..|+++++|++++.|+++|+|+.++++
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~~~ 249 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDEPS 249 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC---
T ss_pred CCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCCCC
Confidence 99888876544 456676 999999999999999999999999865 367899999999999999999988766
Q ss_pred CCCCCc
Q 000167 822 VVPKKT 827 (1972)
Q Consensus 822 ~~p~r~ 827 (1972)
|+|.+.
T Consensus 250 ~~~~~~ 255 (278)
T 4ffb_C 250 SSKMLF 255 (278)
T ss_dssp ----CC
T ss_pred CCCcch
Confidence 666554
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.5e-11 Score=150.75 Aligned_cols=377 Identities=12% Similarity=0.069 Sum_probs=268.2
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHc----------
Q 000167 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---------- 674 (1972)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~---------- 674 (1972)
.++.++.+.+-..|.+|-+.|.++-.... ......++.++.. .+.+..|.+.+.-++..++...
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--~~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENL--PTFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 45677888899999999999987544211 1133455566542 2346778888888888876421
Q ss_pred --CCCchhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcChh----HHHHHHHHhhhhCC--ChHHHHHHHHHHHH
Q 000167 675 --TKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHK--NPKVLSEGILWMVS 744 (1972)
Q Consensus 675 --~~~~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~~----~vl~~l~~~l~~~K--npKv~~e~l~~L~~ 744 (1972)
..+.......+-..|++.+.+ .++ ..+..++..++....++ -+++.++..+ .+. ++.++..++.+|..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 234444445566667777766 357 77888888888775443 3566666665 455 89999999999999
Q ss_pred HHHHhCCCCC--ChhhHHHHHHhcCCCCC--chhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCC
Q 000167 745 AVEDFGVSHL--KLKDLIDFCKDTGLQSS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1972)
Q Consensus 745 ~i~~fG~~~l--~~k~li~~l~~~gL~~s--n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~ 820 (1972)
+++++....+ ....+++.+..+ +.+. ++.||.+|.++++.+..+++..+.. . .+
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~-------~-------~~------- 214 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDK-------E-------SE------- 214 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS-------H-------HH-------
T ss_pred HHHhCCchhhHhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh-------h-------HH-------
Confidence 9998732222 245677777776 8888 7999999999988764332211100 0 00
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChh-hHHHH
Q 000167 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGG 899 (1972)
Q Consensus 821 ~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~-eL~~~ 899 (1972)
...+.+.+...+.+.++.+|..+++.+..++......+.+. +. +++..
T Consensus 215 ------------------------------~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~ 263 (462)
T 1ibr_B 215 ------------------------------RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAI 263 (462)
T ss_dssp ------------------------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHH
T ss_pred ------------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 00012233344567789999999999999998654555554 36 88888
Q ss_pred HHhccccchHHHHHHHHHHHHHHHHHc---------------------ChhhHhhhhhHHHHHHHHhCCC-------cHH
Q 000167 900 LRGRLYDSNKNLVMATLITLGAVASAM---------------------GPAVEKSSKGVLSDILKCLGDN-------KKH 951 (1972)
Q Consensus 900 L~~~L~DsN~~V~~~Al~~l~~La~al---------------------g~~~~~~~~~llp~ll~~L~D~-------k~~ 951 (1972)
+...+.|.+..|+..|+..+..++... ..-+++|+..++|.++..+.+. ...
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888889999999999999999998753 2235567889999999998643 347
Q ss_pred HHHHHHHHHHHHHHhcCchhhH----HHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCC
Q 000167 952 MRECTLTVLDAWLAAVHLDKMV----PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDK 1024 (1972)
Q Consensus 952 Vr~Aa~~aL~~i~~~~~l~~ll----~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~ 1024 (1972)
+|.+|..+|..++..+| +.++ |.+...|.+. +|..|..++..+......... .+.+..++..++.+|.|.
T Consensus 344 ~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 4444 4555556655 799999999999877664432 133445666699999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCh
Q 000167 1025 SSDVRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 1025 ~~dVR~aA~~~l~~l~~~~G~ 1045 (1972)
++.||.+|..++..+...++.
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998876
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-11 Score=150.30 Aligned_cols=380 Identities=13% Similarity=0.088 Sum_probs=264.6
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCC--cHHHHHHHHHHHHHHHHHhch---------
Q 000167 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS--NAPVQDKALDALIAYLKAADA--------- 85 (1972)
Q Consensus 17 ~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds--N~~vqe~~leal~~~v~~~~~--------- 85 (1972)
.+.+.+.+-..|.+|-+.|.+ +... +.|.| ...+...+.++ +..+...|...|..+++....
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~-~~~~---~~~~~---~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLER-AAVE---NLPTF---LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHH-HHHH---HHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHH-HHhh---ChHHH---HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 345667888899999999877 4321 12334 33333444443 788999998888888754210
Q ss_pred --hhh-hhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHHH
Q 000167 86 --DAG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQAL 156 (1972)
Q Consensus 86 --~~~-~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~l~~~l 156 (1972)
... .....|-..|++.+....+.+ ..+..++-.++..+.+ ..+++.|...+.+. ++.++.+++.+|..+.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 011 112335555666543345566 6666666666655433 36788888888887 8999999999999999
Q ss_pred HHhCCCccC--hhHHHHhhhhhhcCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCC
Q 000167 157 SEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTAR 232 (1972)
Q Consensus 157 ~~fG~~~~~--~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~ 232 (1972)
+.+....+. ...+++.+..++.+. +..||.+|..++..+..++++ .. .. .. +.+
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-----~~-~~---~~-------~~~------ 216 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA-----NF-DK---ES-------ERH------ 216 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH-----HH-TS---HH-------HHH------
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-----hh-hh---hH-------HHH------
Confidence 887433322 356889999999998 799999998877665433321 11 00 00 000
Q ss_pred CCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHH
Q 000167 233 PTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312 (1972)
Q Consensus 233 P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l 312 (1972)
| ++ ..+.+.+.+.++..|..+++.|..+
T Consensus 217 ----------------------------------------~-------l~-----~~l~~~~~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 217 ----------------------------------------F-------IM-----QVVCEATQCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp ----------------------------------------H-------HH-----HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----------------------------------------H-------HH-----HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 0 00 0111123445667789999999888
Q ss_pred hc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh---------------------hhchhhhhhhHHH
Q 000167 313 AS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGL---------------------RTHFSGSSRFLLP 369 (1972)
Q Consensus 313 ~~-~~ki~~~~y~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L---------------------~~~f~~~~~~llp 369 (1972)
+. .++.....+. .++..+...+.|.+..|+..|+..+..++... ..-+.+|...++|
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 324 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccH
Confidence 73 4443333445 78888888888999999999999999998764 1224567789999
Q ss_pred HHHHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000167 370 VLLEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (1972)
Q Consensus 370 ~LL~klkd-------kk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (1972)
.+++.+.+ ....+|.++..+|..+... +..-+..+++.+...+++.+|++|..++..+..+.+.+....+..
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 404 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 99998854 3457899999999999886 112244567777788889999999999999998887665444556
Q ss_pred hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 442 ~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
+++.++|.+..++.|+++.||.+|+.+++.+...++.
T Consensus 405 ~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 7799999999999999999999999999999999886
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.23 E-value=8.9e-09 Score=135.90 Aligned_cols=479 Identities=13% Similarity=0.160 Sum_probs=291.5
Q ss_pred hhhhhhhHHHHHHHHhccCcHHHH-HHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000167 360 FSGSSRFLLPVLLEKLKEKKPTVA-ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1972)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~-~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (1972)
|..+.+.-+..+-+.|...+...+ +++...+..+. .| ...+..+..++..++++++.+|+-+..++..+....+
T Consensus 7 f~~~~~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~-~G-~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~--- 81 (591)
T 2vgl_B 7 FTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMT-VG-KDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP--- 81 (591)
T ss_dssp TCCCSSSHHHHHHHHTTSSCHHHHHHHHHHHHHHHH-TT-CCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH---
T ss_pred cccccCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH-CC-CChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc---
Confidence 433334445566666766665444 44444443333 22 4556778888888899999999888888877665421
Q ss_pred HHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCC
Q 000167 439 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQT 518 (1972)
Q Consensus 439 l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~ 518 (1972)
..+-.++..+.+.|+|+++.||..|..+++.+ +...+.+
T Consensus 82 --e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i----~~~~~~~----------------------------------- 120 (591)
T 2vgl_B 82 --DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI----RVDKITE----------------------------------- 120 (591)
T ss_dssp --HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC----CSGGGHH-----------------------------------
T ss_pred --hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC----ChHHHHH-----------------------------------
Confidence 12244677888899999999998887666432 1111110
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHh
Q 000167 519 SGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598 (1972)
Q Consensus 519 ~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~ 598 (1972)
T Consensus 121 -------------------------------------------------------------------------------- 120 (591)
T 2vgl_B 121 -------------------------------------------------------------------------------- 120 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCC-
Q 000167 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF- 677 (1972)
Q Consensus 599 ~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~- 677 (1972)
.+-+.+...|.|.++..|..|+..+..++....+.-.. ..++..+.. .+.|.|..|...++.++..+....+..
T Consensus 121 --~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~--lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 121 --YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-QGFLDSLRD--LIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp --HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHH--TTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred --HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-ccHHHHHHH--HhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 01134556677778888888888888877643322111 123333322 457888888888888888776643321
Q ss_pred chhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcC--hhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhC--C
Q 000167 678 PKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG--V 751 (1972)
Q Consensus 678 ~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~--~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG--~ 751 (1972)
........+..|+..+.+ +-.+-...++|..++.... ...+++.+... ..+.|+.|+.+|+..+..+....+ .
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~-l~~~~~~V~~ea~~~i~~l~~~~~~~~ 274 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPR-LSHANSAVVLSAVKVLMKFLELLPKDS 274 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTC-SCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHhhccCCCH
Confidence 011122334444444433 2233333333322221100 12344444444 368899999999988776543221 1
Q ss_pred CCCC--hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000167 752 SHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (1972)
Q Consensus 752 ~~l~--~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r 829 (1972)
..+. ...+...+..+ + +++++||..|...++.+.......+..+
T Consensus 275 ~~~~~~~~~~~~~L~~L-~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~-------------------------------- 320 (591)
T 2vgl_B 275 DYYNMLLKKLAPPLVTL-L-SGEPEVQYVALRNINLIVQKRPEILKQE-------------------------------- 320 (591)
T ss_dssp BSHHHHHHHTHHHHHHH-T-TSCHHHHHHHHHHHHHHHHHCCSTTTTC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHH-h-cCCccHHHHHHHHHHHHHHhChHHHHHH--------------------------------
Confidence 1111 12233333343 3 5889999999999888754321111000
Q ss_pred cccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchH
Q 000167 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909 (1972)
Q Consensus 830 ~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~ 909 (1972)
+. .++- ..+.+|.+|.++++.+..++.+ ....+++..|...+.|.+.
T Consensus 321 ------------------------~~-~~~~-~~~d~~~Ir~~al~~L~~l~~~-------~nv~~iv~~L~~~l~~~d~ 367 (591)
T 2vgl_B 321 ------------------------IK-VFFV-KYNDPIYVKLEKLDIMIRLASQ-------ANIAQVLAELKEYATEVDV 367 (591)
T ss_dssp ------------------------TT-TTSC-CTTSCHHHHHHHHHHHHHTCCS-------STHHHHHHHHHHHTTSSCH
T ss_pred ------------------------HH-hhee-ccCChHHHHHHHHHHHHHHCCh-------hhHHHHHHHHHHHHhcCCH
Confidence 00 1111 1233499999999888766532 2247788888888888888
Q ss_pred HHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCCh
Q 000167 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 987 (1972)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~~~~~ 987 (1972)
.++..++..|+.++... .+....+++.++..+.+....|+..+..++..++...+ ...+++.+...+.+-. .|
T Consensus 368 ~~r~~~v~aI~~la~~~----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~-~~ 442 (591)
T 2vgl_B 368 DFVRKAVRAIGRCAIKV----EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD-EP 442 (591)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC-SH
T ss_pred HHHHHHHHHHHHHHHhC----hhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc-CH
Confidence 89999999998888653 34456778888888999999999988899999888765 2456777777776432 47
Q ss_pred hHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000167 988 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~ 1045 (1972)
.+|..++ |+..-+... ..+....+..++..+.|.++.||.++..++..+....+.
T Consensus 443 ~~~~~~~-wilGey~~~--~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 443 DARAAMI-WIVGEYAER--IDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS 497 (591)
T ss_dssp HHHHHHH-HHHHTTCTT--CTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHH-HHHHccccc--ccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch
Confidence 7766554 543222211 123445666677788888999999998888888876654
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-08 Score=131.35 Aligned_cols=492 Identities=13% Similarity=0.151 Sum_probs=308.1
Q ss_pred chhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
++-+.+.+.+=.+|++++..+..+. .+. +...++..+.+.+.+.|..+...+...+..+++.- ...+..+
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~-----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~ 87 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGK-----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMA 87 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTC-----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHH
Confidence 4556677888888999999887654 333 23334445556788999988888888887776641 2235667
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (1972)
++.+.+-+.++++.+|..|..++..+.. ..-.+.+++.+..++.+.+|.||..++..+.++....+. .+.. ..++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~--~~~~ 162 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVED--QGFL 162 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHH--HHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hccc--ccHH
Confidence 7888888999999999776554443321 112345677788999999999999999999998875543 2211 3588
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhCch--------hHHHhHhhc---cHHHHHHHHHHHhcCCCCCCCCCCCCcc
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMR--------PLERSIEKL---DDVRRNKLSEMIAGSGGDVATGTSSARV 516 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~--------~~~~~l~~L---d~~~~kkI~e~~~~~~~~~~~~~~~~~~ 516 (1972)
+.+.++|+|.++.||.+|..+|+.+...-++. .+..++..| ++-.+-++-+.+....
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~------------ 230 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN------------ 230 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC------------
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC------------
Confidence 99999999999999999999998887654321 133333322 2222223333222110
Q ss_pred CCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 000167 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1972)
Q Consensus 517 ~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 596 (1972)
|. .+++...
T Consensus 231 ------------------------------~~-----------------------------------------~~~~~~~ 239 (591)
T 2vgl_B 231 ------------------------------PK-----------------------------------------DDREAQS 239 (591)
T ss_dssp ------------------------------CC-----------------------------------------SHHHHHH
T ss_pred ------------------------------CC-----------------------------------------ChHHHHH
Confidence 00 1122222
Q ss_pred HhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhc--c-cc-chhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHH
Q 000167 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV--Q-NL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 672 (1972)
Q Consensus 597 ~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~--~-~~-~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~ 672 (1972)
.+ +.+...|.|.++..|.+|+..+..+.... + +. ....+.+...|.. +.+++..|.-.++..+..++.
T Consensus 240 ~l-----~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~---L~~~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 240 IC-----ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT---LLSGEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp HH-----HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH---HTTSCHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH---HhcCCccHHHHHHHHHHHHHH
Confidence 11 34556788999999999999888664322 1 11 0011112221111 112344578889999999988
Q ss_pred HcCCCchhhHHHHHHHHHhhhcc-hhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCC
Q 000167 673 TATKFPKKCVVLCLLGISERVAD-IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (1972)
Q Consensus 673 ~~~~~~~~~~~~il~~LveKlgd-~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~ 751 (1972)
..+........ .++-...| ..+|..+.++|..++.....+.++.++..++ .+.++.++.+++.++..+...|..
T Consensus 312 ~~p~~~~~~~~----~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l-~~~d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 312 KRPEILKQEIK----VFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYA-TEVDVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HCCSTTTTCTT----TTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred hChHHHHHHHH----hheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhChh
Confidence 76654322221 11222233 3468888888888887777777888888876 567899999999999988876532
Q ss_pred CCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 000167 752 SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (1972)
Q Consensus 752 ~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~ 831 (1972)
....+++.+.++ +.+.+..|+..++..+..+.+..... .
T Consensus 387 ---~~~~~v~~Ll~l-l~~~~~~v~~e~i~~l~~ii~~~p~~--------~----------------------------- 425 (591)
T 2vgl_B 387 ---SAERCVSTLLDL-IQTKVNYVVQEAIVVIRDIFRKYPNK--------Y----------------------------- 425 (591)
T ss_dssp ---HHHHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHSCSS--------C-----------------------------
T ss_pred ---HHHHHHHHHHHH-HcccchHHHHHHHHHHHHHHHHCcch--------H-----------------------------
Confidence 234577777777 88888888888877666554322100 0
Q ss_pred cccCCCCCCCCCCCCcccccccccHHHHHhcCC-CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHH
Q 000167 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN 910 (1972)
Q Consensus 832 ~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d-~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~ 910 (1972)
..+...+.+.+.+ .....|..++-.+++.. ..+. + ..+++..|.+++.+.+..
T Consensus 426 --------------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~----~~~~-~-~~~~l~~l~~~~~~~~~~ 479 (591)
T 2vgl_B 426 --------------------ESIIATLCENLDSLDEPDARAAMIWIVGEYA----ERID-N-ADELLESFLEGFHDESTQ 479 (591)
T ss_dssp --------------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC----TTCT-T-HHHHHHHHSTTCSSSCHH
T ss_pred --------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHccc----cccc-C-HHHHHHHHHHhhccCCHH
Confidence 0011233333432 34555666665555432 2222 2 367888888888888888
Q ss_pred HHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHh-CC-CcHHHHHHHHHHHH
Q 000167 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GD-NKKHMRECTLTVLD 961 (1972)
Q Consensus 911 V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L-~D-~k~~Vr~Aa~~aL~ 961 (1972)
|+..++.++..+....... ....+..+++.+ .| ....||+-|...+.
T Consensus 480 vr~~~l~a~~Kl~~~~p~~----~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 480 VQLTLLTAIVKLFLKKPSE----TQELVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHHHHHHHHHTTCCST----THHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCchH----HHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 9999898888887644322 124555566554 45 55678877655443
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=154.21 Aligned_cols=195 Identities=16% Similarity=0.203 Sum_probs=167.1
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh--hhchhhhhhh
Q 000167 290 FWEGVKATKWSERKDAVAELTKLASTKR-IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSRF 366 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~k-i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L--~~~f~~~~~~ 366 (1972)
.++++...+-.+|+++...+..++.+.. .....+ .++..|++.+.|.+.. ..|+.+++.||... ...++||+-.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 4455655556789999999998775332 222233 7999999999988766 89999999999655 4589999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000167 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1972)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (1972)
++|.+|+.++||...|++|+..|+++++.. +...+..++|.|+.+|++. .|+.|.+++.++..+.... +..+...++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~ 174 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMP 174 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhcc
Confidence 999999999999999999999999999987 2234578899999999865 5999999999999998877 567788899
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhc
Q 000167 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1972)
Q Consensus 445 ~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~L 488 (1972)
+++|.+..++.|..++|.++|.+++..++.+++++++.++++.|
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~ 218 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSL 218 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHH
Confidence 99999999999999999999999999999999999999999876
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5.7e-09 Score=132.43 Aligned_cols=391 Identities=11% Similarity=0.050 Sum_probs=263.2
Q ss_pred hhhhcCC-----ChhhhhcCCChHHHHHHHHHHHHHhhccCCCC-chhHH--hhhhhhHhhhcCC-cHHHHHHHHHHHHH
Q 000167 8 LKEAKKL-----PWEDRLLHKNWKVRNEANIDLAALCDSITDPK-DNRIR--ELGPLFKKTVADS-NAPVQDKALDALIA 78 (1972)
Q Consensus 8 ~~~~~~l-----pl~erl~~k~WK~R~~ayeel~~~~~~~~d~~-~~~~~--~~~~~~~k~v~Ds-N~~vqe~~leal~~ 78 (1972)
..+|... ++.+.+.+.+...|..|...|.+.+....++. ...+. ...+.+.+.+.+. |..+|..++.+|..
T Consensus 12 ~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~ 91 (450)
T 2jdq_A 12 NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTN 91 (450)
T ss_dssp ----------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3466655 36788999999999999999999875322221 11121 2345556677777 99999999999988
Q ss_pred HHHHhchhhhhhh-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh--h-----hhHHHHHHHHhhc-CChhhHHHHH
Q 000167 79 YLKAADADAGRYA-KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V-----DVFLDVMEKAIKN-KVAKAVVPAI 149 (1972)
Q Consensus 79 ~v~~~~~~~~~~~-~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~--~-----~~v~~~L~~~~~~-KnpKv~~~~l 149 (1972)
+...........+ ..+++.|++-+-+..+.+|+.|..++..+.+... . ..+++.|...+.+ .++.++..++
T Consensus 92 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 92 IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 8754322111111 3577888776434688999999999888876421 1 2456777777774 7899999999
Q ss_pred HHHHHHHHHhCCC--ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhc
Q 000167 150 DVMFQALSEFGAK--IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV 227 (1972)
Q Consensus 150 ~~l~~~l~~fG~~--~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~ 227 (1972)
.+|..+....+.. ..-+..+++.|..++.+.|..||..+..++..+..... . . .+.+ .
T Consensus 172 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-----~-~--------~~~~---~--- 231 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN-----D-K--------IQAV---I--- 231 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH-----H-H--------HHHH---H---
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc-----H-H--------HHHH---H---
Confidence 9998887543221 11236789999999999999999988766554432110 0 0 0000 0
Q ss_pred cCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHH
Q 000167 228 SGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVA 307 (1972)
Q Consensus 228 ~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~ 307 (1972)
. . + + + +.+...+.+.+|..|..|+.
T Consensus 232 ------------------------~-~--~-----------------------~---i--~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 232 ------------------------D-A--G-----------------------V---C--RRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp ------------------------H-T--T-----------------------T---H--HHHHHHTTCSCHHHHHHHHH
T ss_pred ------------------------H-c--C-----------------------c---H--HHHHHHHCCCchhHHHHHHH
Confidence 0 0 0 0 0 23445566788999999999
Q ss_pred HHHHHhcCCCCCCCC-h-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh-hhHHHHHHHHhccCcHHHHH
Q 000167 308 ELTKLASTKRIAPGD-F-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAE 384 (1972)
Q Consensus 308 ~L~~l~~~~ki~~~~-y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~llp~LL~klkdkk~~V~~ 384 (1972)
.|..++.+..-.... + ..+++.|...+.+.+..++..|+.+|+.|+.+-........ ..++|.++..+.+..+.|+.
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~ 336 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 336 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 999887532100000 0 13778888889988999999999999999865433333333 37899999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH------HHHhhhhH-----H
Q 000167 385 SLTQTLQAMHKAGC-LNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA------VLKVHKDY-----V 447 (1972)
Q Consensus 385 aa~~aL~al~~~~~-~~l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~------l~~~l~~l-----~ 447 (1972)
.+..+|..+...+. ... ..+++.|...++++++.+|..++..|..++...+... +.++...+ +
T Consensus 337 ~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 416 (450)
T 2jdq_A 337 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 416 (450)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcH
Confidence 99999999876410 011 2377888899999999999999999998886543211 11233333 5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
+.+...+++.+.+||+.|..++..+.
T Consensus 417 ~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 417 DKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 67788889999999999988877554
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-08 Score=132.76 Aligned_cols=382 Identities=10% Similarity=0.055 Sum_probs=263.5
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhH--HhhhhhhHhhhcCC-cHHHHHHHHHHHHHHHHHhchhhhhhh-
Q 000167 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRI--RELGPLFKKTVADS-NAPVQDKALDALIAYLKAADADAGRYA- 91 (1972)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~--~~~~~~~~k~v~Ds-N~~vqe~~leal~~~v~~~~~~~~~~~- 91 (1972)
+.+.|.+.+|..|..|...|.+.+....++.-..+ ....+.+.+++.+. |..+|..++.+|..+...... ....+
T Consensus 92 lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~ 170 (530)
T 1wa5_B 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVV 170 (530)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 46778899999999999999998764322211111 12345566778887 999999999999877653221 11221
Q ss_pred -HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh--hh-----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC-
Q 000167 92 -KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE--AV-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK- 162 (1972)
Q Consensus 92 -~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~--~~-----~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~- 162 (1972)
...++.|+.-+-...+.+|+.|..++..++... .. ..+++.|...+.+.++.++..++.+|..+....+..
T Consensus 171 ~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 245677776533368899999999988887542 11 245677788888889999999999998876543221
Q ss_pred -ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhh
Q 000167 163 -IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241 (1972)
Q Consensus 163 -~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~ 241 (1972)
..-...+++.|..++.+.|..||..|..++..|.....+ ..+.+ ++
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~--------------~~~~~---~~---------------- 297 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE--------------AIQAV---ID---------------- 297 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH--------------HHHHH---HH----------------
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH--------------HHHHH---Hh----------------
Confidence 112356899999999999999999988877666532110 00000 00
Q ss_pred hHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCC
Q 000167 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 321 (1972)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~ 321 (1972)
. + + + +.+...+.+.+|..|..|+..|..++.+..-...
T Consensus 298 ----------~----~-----------------------~---v--~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 335 (530)
T 1wa5_B 298 ----------V----R-----------------------I---P--KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335 (530)
T ss_dssp ----------T----T-----------------------C---H--HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ----------c----C-----------------------c---H--HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHH
Confidence 0 0 0 0 2344556778899999999999988753210000
Q ss_pred C-h-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh-hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC
Q 000167 322 D-F-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1972)
Q Consensus 322 ~-y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~ 398 (1972)
. + ..+++.|...+.+.+..++..|+.+|+.|+.+-......++ ..++|.|+..+.+....|+..+..+|..+... .
T Consensus 336 ~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~ 414 (530)
T 1wa5_B 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG-G 414 (530)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-C
Confidence 0 0 14677888899988999999999999999875433333333 36889999999999999999999999999875 2
Q ss_pred CC----h-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---------HHHHhh--hhHHHHHHHHhcCCC
Q 000167 399 LN----L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---------AVLKVH--KDYVPICMECLNDGT 458 (1972)
Q Consensus 399 ~~----l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---------~l~~~l--~~l~p~l~k~l~Ds~ 458 (1972)
.+ . ..+++.|...+.+.++.++..++..|..++...+.. .+...+ ...++.|..+++|.+
T Consensus 415 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~ 494 (530)
T 1wa5_B 415 LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 494 (530)
T ss_dssp TTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCC
Confidence 21 0 136788888999999999999999999988754321 111111 124778888899999
Q ss_pred hHHHHHHHHHHHHHHH
Q 000167 459 PEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 459 ~~VR~aA~~~l~~l~~ 474 (1972)
++|++.|..++..++.
T Consensus 495 ~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 495 DKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999988887765543
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-06 Score=120.35 Aligned_cols=699 Identities=11% Similarity=0.087 Sum_probs=372.0
Q ss_pred cCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCCccCh------hH-HHHhhh
Q 000167 103 LTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAKIIPP------KR-ILKMLP 174 (1972)
Q Consensus 103 l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~-~~KnpKv~~~~l~~l~~~l~~fG~~~~~~------k~-il~~l~ 174 (1972)
+++.+..|..|.+.|..+-+ +|+ .+..+..-+ .+.++.++..|...|.+.++..- ..++. |. ++..+.
T Consensus 17 ~~~d~~~r~~A~~~L~~~~~--~p~-~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w-~~l~~~~~~~ir~~ll~~l~ 92 (971)
T 2x1g_F 17 YRSNSQNQAITHEWLTDAEA--SPQ-AWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHW-HEVPPENREELKQKILESIV 92 (971)
T ss_dssp HTSTTTC----CHHHHHTTT--STH-HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCG-GGCCGGGHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHc--CHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccH-hhCCHHHHHHHHHHHHHHHH
Confidence 34455677778777665432 232 222222222 35788999999999999887532 23432 22 444444
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCC
Q 000167 175 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDV 254 (1972)
Q Consensus 175 ~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~ 254 (1972)
..- ...+.||.....++++|.++..+ .-.. + +.+|-..+..-. .|.
T Consensus 93 ~~~-~~~~~vr~kl~~~la~i~~~~~p-~Wp~-~--------l~~l~~~~~~~~---~~~-------------------- 138 (971)
T 2x1g_F 93 RFA-GGPKIVLNRLCISLGAYIVHMLG-EWPG-A--------IEEVINTFQNQR---MPN-------------------- 138 (971)
T ss_dssp HHT-TSCHHHHHHHHHHHHHHHHHTTC-C---------------HHHHHHHHTC--------------------------
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHHccc-cccH-H--------HHHHHHHHhccc---ccc--------------------
Confidence 443 23689999999999999888764 1111 1 122222221100 000
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 000167 255 GPGPSEESTADVPPEID-EYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKL 333 (1972)
Q Consensus 255 ~~~~~~~~~~~~~~~iD-~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~ 333 (1972)
++ +-...-...|+..++ ++.+.. . ...|+..+.. .+.. ....++..+.+.
T Consensus 139 ---------------~~~~~~~~~~l~iL~~l~-EEi~~~-~---~~~~r~~~~~--~l~~-------~~~~vl~ll~~~ 189 (971)
T 2x1g_F 139 ---------------VSADVQLWIMLEVLTAIP-EEAQVI-H---TSVKRVVLRA--EIAK-------RVQLVIHTVERY 189 (971)
T ss_dssp ----------------CHHHHHHHHHHHHHHHH-HHHHHC-C---CSSCHHHHHH--HHHT-------THHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHhH-HHHhcc-C---cHHHHHHHHH--HHHH-------HHHHHHHHHHHH
Confidence 00 000000123444443 222211 1 1123322221 1111 245566666666
Q ss_pred hcc--cC------HHHHHHHHHHHHHHHH--HhhhchhhhhhhHHHHHHHHhc----------------cCcHHHHHHHH
Q 000167 334 ITD--VN------IAVAVEAIQAIGNLAR--GLRTHFSGSSRFLLPVLLEKLK----------------EKKPTVAESLT 387 (1972)
Q Consensus 334 l~D--~N------~~V~~~A~~~l~~La~--~L~~~f~~~~~~llp~LL~klk----------------dkk~~V~~aa~ 387 (1972)
+.+ .+ ..+...+++|+..... .+... ....+++.++. +. +..+.+++++.
T Consensus 190 l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 265 (971)
T 2x1g_F 190 LKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCL 265 (971)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHH
T ss_pred HhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHH
Confidence 652 21 2688889999998877 34333 44567777776 51 25678999999
Q ss_pred HHHHHHHHhcC-----CChHhHHHHHHH-------HhhcCCh---HHHHHHHHHHHHHHHhcChhH----------HHHh
Q 000167 388 QTLQAMHKAGC-----LNLVDVVEDVKT-------SVKNKVP---LVRSLTLNWVTFCIETSSKAA----------VLKV 442 (1972)
Q Consensus 388 ~aL~al~~~~~-----~~l~~il~~l~~-------~l~~Knp---~vR~~~l~~L~~~l~~~~~~~----------l~~~ 442 (1972)
+|+..++.... ..+..+++.+.. +++++.. ......+.++..+.+.+.... ....
T Consensus 266 ~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (971)
T 2x1g_F 266 KTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSIL 345 (971)
T ss_dssp HHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHH
Confidence 99999987411 012334444433 2233343 666677777777665543211 1245
Q ss_pred hhhHHHHHHHHhcC-----CChHHHHHHHHHHHHHHH-HhCc------h----hHHHhHhhccHHHHHHHHHHHhcCCCC
Q 000167 443 HKDYVPICMECLND-----GTPEVRDAAFSVLAAIAK-SVGM------R----PLERSIEKLDDVRRNKLSEMIAGSGGD 506 (1972)
Q Consensus 443 l~~l~p~l~k~l~D-----s~~~VR~aA~~~l~~l~~-~~ge------~----~~~~~l~~Ld~~~~kkI~e~~~~~~~~ 506 (1972)
+..+++.+..++.. .+.+|+..+.+....+.. .... . .+.+++..| +..++.+..-
T Consensus 346 l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-------l~~l~~~~~~- 417 (971)
T 2x1g_F 346 VHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHL-------TRILVRKSEQ- 417 (971)
T ss_dssp HHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH-------HHHHHHHTSC-
T ss_pred HHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH-------HHHHHHHhcC-
Confidence 67788888887743 578898888888777766 3210 1 112222222 2222222100
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 507 VATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP 586 (1972)
Q Consensus 507 ~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~ 586 (1972)
|.. ++..
T Consensus 418 ----------------------------------------p~~--------------------------------~~~~- 424 (971)
T 2x1g_F 418 ----------------------------------------PDE--------------------------------KSLA- 424 (971)
T ss_dssp ----------------------------------------CCT--------------------------------TTTS-
T ss_pred ----------------------------------------CCc--------------------------------cccc-
Confidence 000 0000
Q ss_pred CCCCHHHHH-------------HHhhccCc--------HHHHHhhhc-----CChHHHHHHHHHHHHHHHhccc-cchhH
Q 000167 587 SEMSLEEIE-------------SRLGSLIP--------ADTVGQLKS-----AVWKERLEAISSLRQQVEAVQN-LDQSV 639 (1972)
Q Consensus 587 ~~~s~ee~e-------------~~~~~ll~--------~~l~~~L~s-----~~Wk~Rl~a~e~L~~~v~~~~~-~~~~~ 639 (1972)
..+.+|-+ ..+..+++ +-+...|.+ .+|+.|.+|+-.+..+.++... .....
T Consensus 425 -~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l 503 (971)
T 2x1g_F 425 -KWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQI 503 (971)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHH
T ss_pred -ccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 00111100 00111222 122233333 7999999999999988666332 12233
Q ss_pred HHHHHHHhcCCCCc--cchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhH
Q 000167 640 EILVRLVCMLPGWS--EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGF 717 (1972)
Q Consensus 640 ~~lv~~L~~~p~~~--DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~ 717 (1972)
+.++..+. .+. |.+..|...++.++..+.+-..... ..+..+++.|+..+ |++++..|..++..+++.++..
T Consensus 504 ~~l~~~l~---~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~~~v~~~A~~al~~l~~~~~~~- 577 (971)
T 2x1g_F 504 PRLMRVLA---EIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-NSSMSAQATLGLKELCRDCQLQ- 577 (971)
T ss_dssp HHHHHHHH---HSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHHHHH---hcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHh-
Confidence 44555443 333 5688999999999988887544322 45667777777766 4667788888888887665321
Q ss_pred HHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCC--CchhHHHHHHHHHHHHHHhhC-hhH
Q 000167 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDI 794 (1972)
Q Consensus 718 vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~--sn~~VR~aA~~ll~~Ly~~~G-~~l 794 (1972)
+.+++ ..++..+..+ +.. .+..+|..+.++++.+...++ ...
T Consensus 578 ----l~p~~------------------------------~~ll~~l~~~-l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 578 ----LKPYA------------------------------DPLLNACHAS-LNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp ----HHHHH------------------------------HHHHHHHHHH-HHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred ----ccccH------------------------------HHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 11111 1222222222 222 345788888999999987766 446
Q ss_pred HhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHH
Q 000167 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESI 874 (1972)
Q Consensus 795 ~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eal 874 (1972)
..++..+-+.+++.++.-.+.... .++ +-....+.+
T Consensus 623 ~~~~~~ll~~l~~~l~~~~~~~~~------------------------------------~~~--------~~~~~~~~l 658 (971)
T 2x1g_F 623 PKYLDIIVSPCFEELQAICQADSK------------------------------------TPA--------ARIRTIFRL 658 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---------------------------------------CHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC------------------------------------Chh--------hHHHHHHHH
Confidence 667766666666655543211000 000 001122344
Q ss_pred HHHHHHHHHccccCC--------CC----ChhhHHHHHHhccccc--hHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHH
Q 000167 875 EAVNKILEEANKRIQ--------PA----GTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (1972)
Q Consensus 875 e~l~~ll~~a~~~I~--------~~----~~~eL~~~L~~~L~Ds--N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (1972)
+.+..++..-...+. +. ...++++.+...+.+. +..+...++.+++.++..+|..|.+|+..+++.
T Consensus 659 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~ 738 (971)
T 2x1g_F 659 NMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLF 738 (971)
T ss_dssp HHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHH
T ss_pred HHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHH
Confidence 444444442211111 11 1355666666666432 457899999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------hhHHHH----HHHHhcC-----CCChhHHHHHHHHHHHHhcc
Q 000167 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLD--------KMVPYV----TTALTDA-----KLGAEGRKDLFDWLSKQLTG 1003 (1972)
Q Consensus 941 ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~--------~ll~~l----~~~L~~~-----~~~~~~R~~~l~~L~~~l~~ 1003 (1972)
++..+..... ..+...+..++...|-+ .++..+ ...|... ..+|+++.+.+.++...+..
T Consensus 739 l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~ 815 (971)
T 2x1g_F 739 IVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKK 815 (971)
T ss_dssp HHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHh
Confidence 9988876432 34677777887776643 222221 2222211 11588999999999998887
Q ss_pred CCC----CCC-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 1004 LSG----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 1004 ~~~----~~~-~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
.+. ++. +..++...+.+|.-.+.++.+++..++..++..
T Consensus 816 ~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 816 IPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred CcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 664 233 444445566677666666777887788776665
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.04 E-value=7.6e-09 Score=131.27 Aligned_cols=377 Identities=12% Similarity=0.084 Sum_probs=251.5
Q ss_pred cHHHHHhhhcCChHHHHHHHHHHHHHHHh-ccc-cc------hhHHHHHHHHhcCCCCccc-hHHHHHHHHHHHHHHHHH
Q 000167 603 PADTVGQLKSAVWKERLEAISSLRQQVEA-VQN-LD------QSVEILVRLVCMLPGWSEK-NVQVQQQVIEVINYLAAT 673 (1972)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~-~~~-~~------~~~~~lv~~L~~~p~~~Ds-N~qV~~~~Le~l~~l~~~ 673 (1972)
-+.+++.|.+.+...|..|+..|..++.. ..+ .. ...+.++..| ++. +..|+..++.++..++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L------~~~~~~~v~~~a~~~L~~l~~~ 95 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFL------KRKENCTLQFESAWVLTNIASG 95 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHH------TCTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHH------CCCCCHHHHHHHHHHHHHHhcC
Confidence 36788899999999999999999998753 111 11 1234445444 333 778889999999887752
Q ss_pred cCCCchhhH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh-------hHHHHHHHHhhhhCCChHHHHHHHHHHH
Q 000167 674 ATKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNPKVLSEGILWMV 743 (1972)
Q Consensus 674 ~~~~~~~~~-~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~-------~~vl~~l~~~l~~~KnpKv~~e~l~~L~ 743 (1972)
........+ ..++|.|+..+.+ ..+|..|..+|..++..... .-+++.++..+....++.++..++..|.
T Consensus 96 ~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 96 NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175 (450)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 111111111 2467888887765 56899999999998864311 1235566666543578999999999999
Q ss_pred HHHHHhCCC--CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCC
Q 000167 744 SAVEDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT 821 (1972)
Q Consensus 744 ~~i~~fG~~--~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~ 821 (1972)
.+....+.. ..-+..+++.+..+ +.+.++.||..|..++..|-.... .....+ -+
T Consensus 176 ~l~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~------------~~~~~~----~~------ 232 (450)
T 2jdq_A 176 NLCRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPN------------DKIQAV----ID------ 232 (450)
T ss_dssp HHHCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSH------------HHHHHH----HH------
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCc------------HHHHHH----HH------
Confidence 888543121 11135678888887 999999999999988877743211 000000 00
Q ss_pred CCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHH
Q 000167 822 VVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (1972)
Q Consensus 822 ~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~ 901 (1972)
..+.+.++..+.+.+|.+|..++..+..+..........-.-..+++.|.
T Consensus 233 ------------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 282 (450)
T 2jdq_A 233 ------------------------------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLL 282 (450)
T ss_dssp ------------------------------TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred ------------------------------cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHH
Confidence 00234677788889999999999999988753111000000024778888
Q ss_pred hccccchHHHHHHHHHHHHHHHHHcChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhh
Q 000167 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKM 972 (1972)
Q Consensus 902 ~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l--------~~l 972 (1972)
..+.+.+..++..|+.+|+.|+..-........ ..++|.++..+.+..+.||..|..+|..++..... ..+
T Consensus 283 ~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~ 362 (450)
T 2jdq_A 283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362 (450)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence 889999999999999999998753222233333 37899999999999999999999999999876321 237
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC--------CCChhhhH------HHHHhhcCCCCHHHHHHHHHHHHH
Q 000167 973 VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAHLL------KPASIAMTDKSSDVRKAAEACIVE 1038 (1972)
Q Consensus 973 l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--------~~~~~~ll------~pl~~~L~D~~~dVR~aA~~~l~~ 1038 (1972)
+|.+...|.++ ++.+|..++..|...+..... ...+...+ ..+...+.+.+.+||+.|..++..
T Consensus 363 i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 440 (450)
T 2jdq_A 363 IKPLCDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440 (450)
T ss_dssp HHHHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 77888888865 688998888777655542211 01111122 224555678888999988888776
Q ss_pred HH
Q 000167 1039 IL 1040 (1972)
Q Consensus 1039 l~ 1040 (1972)
+.
T Consensus 441 ~~ 442 (450)
T 2jdq_A 441 YF 442 (450)
T ss_dssp HH
T ss_pred HC
Confidence 65
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.02 E-value=6.2e-05 Score=105.17 Aligned_cols=354 Identities=12% Similarity=0.130 Sum_probs=200.7
Q ss_pred hcCChHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 000167 611 KSAVWKERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGI 689 (1972)
Q Consensus 611 ~s~~Wk~Rl~a~e~L~~~v~~~~~-~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~L 689 (1972)
.+.+|+.|.+++-.++.+.++... .......++..+ +++.+.+..|...++.++..+.+.... ....+..+++.|
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l---~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~~l 534 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI---PRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLPLV 534 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG---GGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence 346899999999999988776432 222334444443 356656777888777777666543211 012333344444
Q ss_pred HhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCC
Q 000167 690 SERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGL 768 (1972)
Q Consensus 690 veKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~-~k~li~~l~~~gL 768 (1972)
+..+.+ |+|+..++..|..+++..+..-.+ +..++..+..+ +
T Consensus 535 ~~~l~~------------------------------------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~-l 577 (963)
T 2x19_B 535 LHALGN------------------------------------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV-L 577 (963)
T ss_dssp HHHTTC------------------------------------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH-H
T ss_pred HHHhCC------------------------------------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-h
Confidence 444444 445555555555544443321111 23444444443 3
Q ss_pred CC--CchhHHHHHHHHHHHHHHhhC-hhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 000167 769 QS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (1972)
Q Consensus 769 ~~--sn~~VR~aA~~ll~~Ly~~~G-~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~l 845 (1972)
.. -+..+|....++++.+...+| .....|+..+-+.+...++.-.... .
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-----~----------------------- 629 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI-----P----------------------- 629 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC-----S-----------------------
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC-----C-----------------------
Confidence 32 346788888888888887776 5566677666555555554432100 0
Q ss_pred CcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCC-----------------CC----ChhhHHHHHHhcc
Q 000167 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ-----------------PA----GTGELFGGLRGRL 904 (1972)
Q Consensus 846 prvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~-----------------~~----~~~eL~~~L~~~L 904 (1972)
.++. -+.+...++.+..++........ .. .+..+++.+...+
T Consensus 630 ---------~~~~--------~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 692 (963)
T 2x19_B 630 ---------NPSN--------KLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL 692 (963)
T ss_dssp ---------CHHH--------HHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CHHH--------HHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 0000 01122333344444332111110 00 1233444444433
Q ss_pred cc--chHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------hhHH
Q 000167 905 YD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD--------KMVP 974 (1972)
Q Consensus 905 ~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~--------~ll~ 974 (1972)
.. .+..+...++.+++.++..+|..|.+|+..+++.++..+..... ......+..++...+.+ .++.
T Consensus 693 ~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~ 769 (963)
T 2x19_B 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFL 769 (963)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHH
T ss_pred HhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 21 24578899999999999999999999999999988887754221 23445566666633221 2222
Q ss_pred HHHH----HHh-cCCCChhHHHHHHHHHHHHhccCCC----CCC-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 975 YVTT----ALT-DAKLGAEGRKDLFDWLSKQLTGLSG----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 975 ~l~~----~L~-~~~~~~~~R~~~l~~L~~~l~~~~~----~~~-~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
.+.. .+. +-...|+++...+.++...+...+. .+. +..++..+..++.+.+.+|-+++..++..+....+
T Consensus 770 ~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 770 LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 2222 222 2111589999999999988877654 233 45555567778899999999999999998887765
Q ss_pred -hhHHHHHhc
Q 000167 1045 -QETIEKNLK 1053 (1972)
Q Consensus 1045 -~~~~~~~l~ 1053 (1972)
...+..++.
T Consensus 850 ~~~~~~~~~~ 859 (963)
T 2x19_B 850 EVESVGKVVQ 859 (963)
T ss_dssp SSCHHHHHTT
T ss_pred ChHHHHHHHH
Confidence 334444443
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.6e-09 Score=135.40 Aligned_cols=378 Identities=13% Similarity=0.083 Sum_probs=252.0
Q ss_pred cHHHHHhhhcCChHHHHHHHHHHHHHHHhcccc--c-----hhHHHHHHHHhcCCCCccc-hHHHHHHHHHHHHHHHHHc
Q 000167 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--D-----QSVEILVRLVCMLPGWSEK-NVQVQQQVIEVINYLAATA 674 (1972)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~--~-----~~~~~lv~~L~~~p~~~Ds-N~qV~~~~Le~l~~l~~~~ 674 (1972)
-+.+++.|.+.++..|..|+..|..++...... . .....++.+ +.+. +..|+..++.+|..++...
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~------L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF------MRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHT------TSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHH------hCCCCCHHHHHHHHHHHHHHhCCC
Confidence 367889999999999999999999887643111 1 112233333 3444 7888888888888776521
Q ss_pred CCCchhhH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh--h-----HHHHHHHHhhhhCCChHHHHHHHHHHHH
Q 000167 675 TKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--G-----FIFERLYKIMKDHKNPKVLSEGILWMVS 744 (1972)
Q Consensus 675 ~~~~~~~~-~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~--~-----~vl~~l~~~l~~~KnpKv~~e~l~~L~~ 744 (1972)
+......+ ..+++.|+..+.+ ..++..|..+|..++..... . -+++.++..+ .+.++.++..++..|..
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 11111111 2356777776654 57899999999999864211 1 2355566654 45889999999999988
Q ss_pred HHHHhCCCC--CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCC
Q 000167 745 AVEDFGVSH--LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1972)
Q Consensus 745 ~i~~fG~~~--l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~ 822 (1972)
+....+... .-...+++.+..+ +.+.++.||..|..+|+.|..... .....+ ++ .
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~------------~~~~~~---~~-~------ 298 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGPQ------------EAIQAV---ID-V------ 298 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSCH------------HHHHHH---HH-T------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCH------------HHHHHH---Hh-c------
Confidence 875431211 1134577778888 999999999999999988753211 111111 00 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHh
Q 000167 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1972)
Q Consensus 823 ~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~ 902 (1972)
.+.+.++..+.+.+|.+|..|+..|..++.........-.-..+++.|..
T Consensus 299 ------------------------------~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 299 ------------------------------RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp ------------------------------TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred ------------------------------CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 02356777788899999999999999887421100000001247788888
Q ss_pred ccccchHHHHHHHHHHHHHHHHHcChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----------hh
Q 000167 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DK 971 (1972)
Q Consensus 903 ~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l----------~~ 971 (1972)
.|.+.+..++..|+.+|+.|+..-......++ ..++|.++..|.+....||..|..+|..++...+. ..
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 99999999999999999998753222233333 35889999999999999999999999999876432 23
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC--------CCChhh------hHHHHHhhcCCCCHHHHHHHHHHHH
Q 000167 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIV 1037 (1972)
Q Consensus 972 ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--------~~~~~~------ll~pl~~~L~D~~~dVR~aA~~~l~ 1037 (1972)
+++.|...|.+. ++.+|..++..|...+..... ...... .+..|...+.|.+.+|++.|..++.
T Consensus 429 ~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 429 CIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp CHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677888888865 688998888887766543211 011111 2334666778999999999988887
Q ss_pred HHHHH
Q 000167 1038 EILRA 1042 (1972)
Q Consensus 1038 ~l~~~ 1042 (1972)
.+...
T Consensus 507 ~~~~~ 511 (530)
T 1wa5_B 507 TYFGE 511 (530)
T ss_dssp HHSSS
T ss_pred HHCCc
Confidence 66544
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-06 Score=116.07 Aligned_cols=461 Identities=11% Similarity=0.046 Sum_probs=257.7
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
......+.+++..+.+++...|+-...++..++... +. .+-.++..+.+-|.|+++.||..|..+|+.+. .
T Consensus 66 ~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e----~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~ 136 (618)
T 1w63_A 66 YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDER-QD----VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG----S 136 (618)
T ss_dssp CCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HH----HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----C
T ss_pred CCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cH----HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----C
Confidence 345667788888888999999988777776655432 21 23457788999999999999999988887654 2
Q ss_pred hhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCC
Q 000167 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (1972)
Q Consensus 479 ~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~ 558 (1972)
..+ ++.+
T Consensus 137 ~~~---~~~l---------------------------------------------------------------------- 143 (618)
T 1w63_A 137 SEM---CRDL---------------------------------------------------------------------- 143 (618)
T ss_dssp HHH---HHHH----------------------------------------------------------------------
T ss_pred HHH---HHHH----------------------------------------------------------------------
Confidence 211 1110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchh
Q 000167 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS 638 (1972)
Q Consensus 559 ~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~ 638 (1972)
-+.+...|.|.+.-.|..|+..+..++....+.
T Consensus 144 --------------------------------------------~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~--- 176 (618)
T 1w63_A 144 --------------------------------------------AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL--- 176 (618)
T ss_dssp --------------------------------------------HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG---
T ss_pred --------------------------------------------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH---
Confidence 022334455556666666666666666542221
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc-----------------chhhhHH
Q 000167 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA-----------------DIKTRAH 701 (1972)
Q Consensus 639 ~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg-----------------d~K~r~~ 701 (1972)
.+.++..+. ..+.|.|..|+..++.++..+....+.. ...+..++|.++..+. ++-.+..
T Consensus 177 v~~~~~~l~--~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 177 MEMFLPATK--NLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp GGGGGGGTT--TSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred HHHHHHHHH--HHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 111111111 2456777777777776666554321110 0122233444443322 2333444
Q ss_pred HHHHHHHHHhhcChh------HHHHHHHHhh--hhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCch
Q 000167 702 AMKCLTTFSEAVGPG------FIFERLYKIM--KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773 (1972)
Q Consensus 702 a~~~L~~l~e~~~~~------~vl~~l~~~l--~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~ 773 (1972)
+.++|..++... ++ -++.+++... .++.++-|..+++..+..+ +...--....+..+..+ +.+.++
T Consensus 254 il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~~~~l~~~a~~~L~~~-L~~~d~ 327 (618)
T 1w63_A 254 ILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KSESGLRVLAINILGRF-LLNNDK 327 (618)
T ss_dssp HHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHH-HTCSST
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHH-HhCCCC
Confidence 555555554321 11 1333333321 1233456777777666442 21100011244556666 788899
Q ss_pred hHHHHHHHHHHHHHHhhChhHHhhh-------hcccHHHH-HHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 000167 774 ATRNATIKLLGALHKFVGPDIKGFL-------ADVKPALL-SALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (1972)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L-------~~lkp~ll-~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~l 845 (1972)
+||..|...++.+....+..+..++ .+-.+.+. ..++- +-++..
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alel-L~~l~~--------------------------- 379 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMEL-SFALVN--------------------------- 379 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHH-HHHHCC---------------------------
T ss_pred chHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHH-HHHHcc---------------------------
Confidence 9999999999988765433232222 11111111 11111 111100
Q ss_pred CcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Q 000167 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 925 (1972)
Q Consensus 846 prvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~a 925 (1972)
...+ ..+..+++.-+.+.+-..|.+++..+..++. +..+. +...++.|.+.|.+.+..+...++..+..+...
T Consensus 380 -~~nv-~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~----k~~~~-~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~ 452 (618)
T 1w63_A 380 -GNNI-RGMMKELLYFLDSCEPEFKADCASGIFLAAE----KYAPS-KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN 452 (618)
T ss_dssp -SSST-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----SSCCC-HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH
T ss_pred -cccH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HhCcc-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence 0001 1234567666777788889999999988875 22233 467778888888777666766677777777654
Q ss_pred cChhhHhhhhhHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHhcC-------------chhhHHHHHHHHhcCCCChhHH
Q 000167 926 MGPAVEKSSKGVLSDILKCLGD--NKKHMRECTLTVLDAWLAAVH-------------LDKMVPYVTTALTDAKLGAEGR 990 (1972)
Q Consensus 926 lg~~~~~~~~~llp~ll~~L~D--~k~~Vr~Aa~~aL~~i~~~~~-------------l~~ll~~l~~~L~~~~~~~~~R 990 (1972)
- ++... ..+..++..+.+ ....+..++.-+++.+...+. ...+++.+...+++...++.+|
T Consensus 453 ~-p~l~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr 528 (618)
T 1w63_A 453 S-VEMHA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTR 528 (618)
T ss_dssp S-CSTHH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHH
T ss_pred C-hhHHH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 2 23322 234455555443 223344567788888876541 2235555555554212268899
Q ss_pred HHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCCHHHHHHHHHHHHHH
Q 000167 991 KDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
..++..+.+++...+. ..+.+.. +-.+..|.+.|||..|...+.-+
T Consensus 529 ~~~lta~~Kl~~~~~~---~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 529 GYALTAIMKLSTRFTC---TVNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp HHHHHHHHHHHTTCSS---CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc---hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999888776542 2444555 44467899999999999866554
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.97 E-value=0.00033 Score=97.76 Aligned_cols=594 Identities=12% Similarity=0.079 Sum_probs=319.1
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhch----hhhhhhHHHH
Q 000167 296 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHF----SGSSRFLLPV 370 (1972)
Q Consensus 296 s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f----~~~~~~llp~ 370 (1972)
+.+=..|++|-+.|..+-+.| ++-.+ +..++. +.+..|+..|+.++....+.--..+ ..+++..+-.
T Consensus 36 ~~~~~~r~~A~~~L~~~~~~p-----~~~~~---~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~ 107 (963)
T 2x19_B 36 DPNIENKNLAQKWLMQAQVSP-----QAWHF---SWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFT 107 (963)
T ss_dssp CCCHHHHHHHHHHHHHHHHST-----THHHH---HHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCH-----HHHHH---HHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHH
Confidence 467788999999898876654 22222 223343 6678889999999988776432223 2333333333
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhc-CCChHhHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHhcC---------
Q 000167 371 LLEKLKEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKN-----KVPLVRSLTLNWVTFCIETSS--------- 435 (1972)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~~-~~~l~~il~~l~~~l~~-----Knp~vR~~~l~~L~~~l~~~~--------- 435 (1972)
++.......+.|+..+..++..++.+. ...-..++++|...+++ .++..+...+.+|..+.+...
T Consensus 108 ~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r 187 (963)
T 2x19_B 108 QITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRK 187 (963)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC-----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHH
Confidence 333333335889999999999999871 12345789999988865 266677888888887664320
Q ss_pred ---hhHHHHhhhhHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHhCchhH--HHhHhhc----c-----HHHHHHHHHH
Q 000167 436 ---KAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPL--ERSIEKL----D-----DVRRNKLSEM 499 (1972)
Q Consensus 436 ---~~~l~~~l~~l~p~l~k~l~Ds~~--~VR~aA~~~l~~l~~~~ge~~~--~~~l~~L----d-----~~~~kkI~e~ 499 (1972)
+..+...++.+++.+..++.+... .++.++.+|+..+.. +|.... .++++.+ + ....+-+.+.
T Consensus 188 ~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i 266 (963)
T 2x19_B 188 GLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNA 266 (963)
T ss_dssp ----CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 112234567788888888876543 489999999977666 554211 2222211 0 0000011111
Q ss_pred HhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 500 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTE 579 (1972)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~ 579 (1972)
+.+ ..++
T Consensus 267 ~~~------------------------------------------~~~~------------------------------- 273 (963)
T 2x19_B 267 ISQ------------------------------------------PDAQ------------------------------- 273 (963)
T ss_dssp HTC------------------------------------------TTGG-------------------------------
T ss_pred Hcc------------------------------------------cccc-------------------------------
Confidence 100 0000
Q ss_pred CCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHh----c-------cccchhHHHHHHHHhc
Q 000167 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA----V-------QNLDQSVEILVRLVCM 648 (1972)
Q Consensus 580 ~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~----~-------~~~~~~~~~lv~~L~~ 648 (1972)
...-....+-..+..++ +.+...+...+......-.+-+..+.+. . +......+.++.+. .
T Consensus 274 ------~~~~~~~~l~~~~~~~~-~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~-~ 345 (963)
T 2x19_B 274 ------RYVNTLLKLIPLVLGLQ-EQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCT-G 345 (963)
T ss_dssp ------GCHHHHHHHHHHHHTTH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-T
T ss_pred ------cCHHHHHHHHHHHHhhH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHH-c
Confidence 00000001111111110 1111122222221111112222222111 0 00001122333322 2
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHcCCC-----------chhhHHHHHHHHHhhhcc------------h-----hhhH
Q 000167 649 LPGWSEKNVQVQQQVIEVINYLAATATKF-----------PKKCVVLCLLGISERVAD------------I-----KTRA 700 (1972)
Q Consensus 649 ~p~~~DsN~qV~~~~Le~l~~l~~~~~~~-----------~~~~~~~il~~LveKlgd------------~-----K~r~ 700 (1972)
.|+.-+.+..|...++++|..+++....+ -...+..+++.++.++.- . ..|.
T Consensus 346 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~ 425 (963)
T 2x19_B 346 IPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRV 425 (963)
T ss_dssp CSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHH
Confidence 34321122234667777877777632211 123444556666666521 0 1356
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHhh---h----hCCChHHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCc
Q 000167 701 HAMKCLTTFSEAVGPGFIFERLYKIM---K----DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSA 772 (1972)
Q Consensus 701 ~a~~~L~~l~e~~~~~~vl~~l~~~l---~----~~KnpKv~~e~l~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~sn 772 (1972)
.+.++|..++...+. .+++.++..+ . .+.+|+.+.+++.++..+.+......-+ +..+++.+.. +.+.+
T Consensus 426 ~~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~--l~~~~ 502 (963)
T 2x19_B 426 DISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR--ISISN 502 (963)
T ss_dssp HHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG--SCCCS
T ss_pred HHHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--CCCCc
Confidence 777888888877663 3344333322 2 4568999999998888877644322111 3445665553 55578
Q ss_pred hhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccc
Q 000167 773 AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 852 (1972)
Q Consensus 773 ~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~ 852 (1972)
+.||..+..+++.+..+++..- .|+..+
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~~-~~l~~v--------------------------------------------------- 530 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADHP-VMINSV--------------------------------------------------- 530 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCH-HHHTTT---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCH-HHHHHH---------------------------------------------------
Confidence 9999999999998887664321 222221
Q ss_pred cccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc--cchHHHHHHHHHHHHHHHHHcC-hh
Q 000167 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMG-PA 929 (1972)
Q Consensus 853 ~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~--DsN~~V~~~Al~~l~~La~alg-~~ 929 (1972)
.+.++..+.+ -.+|..|...+..++..+...+.|. +.+++..|...+. +.........+++++.++.+++ ..
T Consensus 531 --l~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~ 605 (963)
T 2x19_B 531 --LPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE 605 (963)
T ss_dssp --HHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred --HHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 2234444433 4567788888999998776667776 4888888877765 3455678888999999998887 67
Q ss_pred hHhhhhhHHHHHHHHhCC-----CcHHHH---HHHHHHHHHHHHhcCchhhHHHHHHHH--hcCCCChhHHHHHHHHHHH
Q 000167 930 VEKSSKGVLSDILKCLGD-----NKKHMR---ECTLTVLDAWLAAVHLDKMVPYVTTAL--TDAKLGAEGRKDLFDWLSK 999 (1972)
Q Consensus 930 ~~~~~~~llp~ll~~L~D-----~k~~Vr---~Aa~~aL~~i~~~~~l~~ll~~l~~~L--~~~~~~~~~R~~~l~~L~~ 999 (1972)
+.+|+..++++++..+.. ..+..+ .....||..++..++...- ..+.+.- ...+ .+..+..+......
T Consensus 606 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 683 (963)
T 2x19_B 606 ILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH-EDDHEGPELRKLP-VPQGPNPVVVVLQQ 683 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC-C----------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc-cccccccccccCC-CCCCCCchHHHHHH
Confidence 889999999999877642 233333 3556666677776652100 0000000 0000 00001111112221
Q ss_pred HhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000167 1000 QLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1972)
Q Consensus 1000 ~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~ 1053 (1972)
+.+.+.-++.... .+.+|++.+..++..+...+|... .+++.
T Consensus 684 ----------~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~-~~~l~ 725 (963)
T 2x19_B 684 ----------VFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDF-APMVP 725 (963)
T ss_dssp ----------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTT-GGGHH
T ss_pred ----------HHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhcccc-cccHH
Confidence 1223333333333 355899999999999999998653 45553
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.97 E-value=8.8e-08 Score=124.60 Aligned_cols=385 Identities=11% Similarity=0.044 Sum_probs=261.4
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhH--HhhhhhhHhhhcCCc-HHHHHHHHHHHHHHHHHhchhhhhhh-
Q 000167 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRI--RELGPLFKKTVADSN-APVQDKALDALIAYLKAADADAGRYA- 91 (1972)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~--~~~~~~~~k~v~DsN-~~vqe~~leal~~~v~~~~~~~~~~~- 91 (1972)
|.+.|.+.+|..|..|...|.+.+....++.-..+ ....+.+.+++.+.+ ..+|..++.+|..+...........+
T Consensus 79 lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~ 158 (528)
T 4b8j_A 79 MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVID 158 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 56788899999999999999998765321211111 123455567777776 99999999999888764322111111
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh--h-----hhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCC-
Q 000167 92 KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V-----DVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAK- 162 (1972)
Q Consensus 92 ~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~--~-----~~v~~~L~~~~-~~KnpKv~~~~l~~l~~~l~~fG~~- 162 (1972)
...++.|+.-+-+..+.+++.|..++..++.... . ..++..|+..+ .+.++.++..++.+|..+.......
T Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~ 238 (528)
T 4b8j_A 159 HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 238 (528)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC
T ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 2477888876333688999999998888875321 1 13456677777 6788999999999998876643221
Q ss_pred ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhh
Q 000167 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (1972)
Q Consensus 163 ~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (1972)
..-...+++.|..++.+.|..||..|..++..+... .+ . . .+.+ +
T Consensus 239 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~---~-~--------~~~~---~------------------ 283 (528)
T 4b8j_A 239 FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TN---D-K--------IQAV---I------------------ 283 (528)
T ss_dssp HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CH---H-H--------HHHH---H------------------
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CH---H-H--------HHHH---H------------------
Confidence 112356899999999999999999987776655421 11 0 0 0000 0
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC
Q 000167 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 322 (1972)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~ 322 (1972)
. .+ + . +.+...+.+.+|..|..|+..|..++.+..-....
T Consensus 284 ---------~---~g-----------------------~----v-~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 323 (528)
T 4b8j_A 284 ---------E---AG-----------------------V----C-PRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC 323 (528)
T ss_dssp ---------H---TT-----------------------C----H-HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred ---------H---cC-----------------------H----H-HHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 00 0 0 23555567778899999999999887532100000
Q ss_pred --hHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHhhhchhhh-hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC
Q 000167 323 --FTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1972)
Q Consensus 323 --y~~l~~~L~k~l~D~-N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~ 398 (1972)
-..+++.|...+.+. +..+...|+.+|+.|+.+-....... -..++|.|+..+.+....++..+..+|..+...+.
T Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~ 403 (528)
T 4b8j_A 324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS 403 (528)
T ss_dssp HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC
Confidence 023677888888877 99999999999999997533322222 23678999999999999999999999999887511
Q ss_pred CC----h--HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---------HHHHhhh--hHHHHHHHHhcCCChHH
Q 000167 399 LN----L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---------AVLKVHK--DYVPICMECLNDGTPEV 461 (1972)
Q Consensus 399 ~~----l--~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---------~l~~~l~--~l~p~l~k~l~Ds~~~V 461 (1972)
.. + ..+++.|...+.+.++.++..++..|..++...... .+...+. ..+..+..+.++.+++|
T Consensus 404 ~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v 483 (528)
T 4b8j_A 404 HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEI 483 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHH
Confidence 00 1 246788889999999999999999999988643220 1111222 23567888899999999
Q ss_pred HHHHHHHHHHHHHH
Q 000167 462 RDAAFSVLAAIAKS 475 (1972)
Q Consensus 462 R~aA~~~l~~l~~~ 475 (1972)
++.|...+..++..
T Consensus 484 ~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 484 YEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHCCC
Confidence 99999988766543
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.5e-05 Score=103.40 Aligned_cols=574 Identities=11% Similarity=0.083 Sum_probs=305.2
Q ss_pred cCChHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcc---cCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHH
Q 000167 296 ATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITD---VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (1972)
Q Consensus 296 s~kWkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~D---~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (1972)
+.+=..|.-|+..|+..+.. ..+.+.+...+-..|...+.. ....|+...+.++..|++.... .+..+++.
T Consensus 51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p----~Wp~~l~~ 126 (971)
T 2x1g_F 51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG----EWPGAIEE 126 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC----C------H
T ss_pred CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc----cccHHHHH
Confidence 34556788899888886632 345555665666666555542 2577888889999999987544 46778899
Q ss_pred HHHHhccC------cHHHHHHHHHHHHHHHHh----------------cCCChHhHHHHHHHHhhc-CCh-------HHH
Q 000167 371 LLEKLKEK------KPTVAESLTQTLQAMHKA----------------GCLNLVDVVEDVKTSVKN-KVP-------LVR 420 (1972)
Q Consensus 371 LL~klkdk------k~~V~~aa~~aL~al~~~----------------~~~~l~~il~~l~~~l~~-Knp-------~vR 420 (1972)
++..++.. ....++.+...|..+..- -...++.+++.+...+++ .++ .++
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~ 206 (971)
T 2x1g_F 127 VINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNM 206 (971)
T ss_dssp HHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHH
Confidence 99888664 566777777777776631 012344555555555542 222 788
Q ss_pred HHHHHHHHHHHHh--cChhHHHHhhhhHHHHHHHHh----------------cCCChHHHHHHHHHHHHHHHHhCchhHH
Q 000167 421 SLTLNWVTFCIET--SSKAAVLKVHKDYVPICMECL----------------NDGTPEVRDAAFSVLAAIAKSVGMRPLE 482 (1972)
Q Consensus 421 ~~~l~~L~~~l~~--~~~~~l~~~l~~l~p~l~k~l----------------~Ds~~~VR~aA~~~l~~l~~~~ge~~~~ 482 (1972)
..++..+..++.. .+.. ....+++.+.. | .+.++++|++|.+|+..+..........
T Consensus 207 ~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~ 281 (971)
T 2x1g_F 207 NRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYP 281 (971)
T ss_dssp HHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCH
T ss_pred HHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccH
Confidence 8888888877773 3333 22455665655 3 2357899999999999998752211112
Q ss_pred HhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000167 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 562 (1972)
Q Consensus 483 ~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~ 562 (1972)
+++..+-+.-......+..... .
T Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~--------------------------------------~------------------- 304 (971)
T 2x1g_F 282 KTAFVLIKMFLDSLSEITKTEW--------------------------------------K------------------- 304 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS--------------------------------------S-------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHh--------------------------------------c-------------------
Confidence 2222221111110000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHh-----ccccch
Q 000167 563 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-----VQNLDQ 637 (1972)
Q Consensus 563 g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~-----~~~~~~ 637 (1972)
+|. +. ++.-..+. .+...+... |.. .+.+.+.. .+....
T Consensus 305 -------------------~d~-~~----~~~~~~l~-----~l~~~~~~~-~~~------~~~~~~~~~~~~~~~~l~~ 348 (971)
T 2x1g_F 305 -------------------REN-DN----EDIIVHIY-----MLFVSSVER-HST------LLLSGITSADPELSILVHR 348 (971)
T ss_dssp -------------------SSC-SC----SHHHHHHH-----HHHHHHHHH-THH------HHHHHHHTCCHHHHHHHHH
T ss_pred -------------------ccc-cc----hHHHHHHH-----HHHHHHHHH-HHH------HHHHHhccCcccccHHHHH
Confidence 000 00 01111110 111111110 000 00000000 000011
Q ss_pred hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC------------CchhhHHHHHHHHHhhhc----------c
Q 000167 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK------------FPKKCVVLCLLGISERVA----------D 695 (1972)
Q Consensus 638 ~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~------------~~~~~~~~il~~LveKlg----------d 695 (1972)
..+.++.+.. .||+...+..|...++++|..+++.... ..+..+..+++.++.++. |
T Consensus 349 ~l~~ll~~~~-~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d 427 (971)
T 2x1g_F 349 IVQEILHCTD-KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWS 427 (971)
T ss_dssp HHHHHHHHHH-CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSC
T ss_pred HHHHHHHHHc-CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccC
Confidence 2334444332 4665544556788888888887762210 113456677777777762 1
Q ss_pred -------hhhhHHHHHHHHHHHhhcChhHHHHHHHHhhh---h-----CCChHHHHHHHHHHHHHHHHhCCCC-CChhhH
Q 000167 696 -------IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK---D-----HKNPKVLSEGILWMVSAVEDFGVSH-LKLKDL 759 (1972)
Q Consensus 696 -------~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~---~-----~KnpKv~~e~l~~L~~~i~~fG~~~-l~~k~l 759 (1972)
...|..+.++|..++...+ +.+++.++..+. . ..+|+.+.+++..+..+.+...... -.+..+
T Consensus 428 ~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l 506 (971)
T 2x1g_F 428 SDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRL 506 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 0246778889999888776 445555554331 2 2689999999988887765333211 124456
Q ss_pred HHHHHhcCC-CCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCC
Q 000167 760 IDFCKDTGL-QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 838 (1972)
Q Consensus 760 i~~l~~~gL-~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~ 838 (1972)
++.+..+ . .+.++.||..|..+++.+..+++... .|+..+-|.++..++
T Consensus 507 ~~~l~~l-~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l~---------------------------- 556 (971)
T 2x1g_F 507 MRVLAEI-PYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGLN---------------------------- 556 (971)
T ss_dssp HHHHHHS-CTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHhc-CccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhC----------------------------
Confidence 6655543 3 24689999999999999998887543 344444444444431
Q ss_pred CCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc--chHHHHHHHH
Q 000167 839 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATL 916 (1972)
Q Consensus 839 ~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D--sN~~V~~~Al 916 (1972)
.+++..|...+..+++.+...+.|. +.+++..|...+.. .........+
T Consensus 557 ----------------------------~~v~~~A~~al~~l~~~~~~~l~p~-~~~ll~~l~~~l~~~~~~~~~~~~~~ 607 (971)
T 2x1g_F 557 ----------------------------SSMSAQATLGLKELCRDCQLQLKPY-ADPLLNACHASLNTGRMKNSDSVRLM 607 (971)
T ss_dssp ----------------------------SSCHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 1234455556666666544444444 36777777776654 3456778889
Q ss_pred HHHHHHHHHcC-hhhHhhhhhHHHHHHHHhC----CC--cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhH
Q 000167 917 ITLGAVASAMG-PAVEKSSKGVLSDILKCLG----DN--KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEG 989 (1972)
Q Consensus 917 ~~l~~La~alg-~~~~~~~~~llp~ll~~L~----D~--k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~ 989 (1972)
++++.++.+++ ..+.+|+..++++++..+. .. ...-+.....+++.+.. +...+.... .. .
T Consensus 608 ~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~----------~~~~l~~~~-~~-~ 675 (971)
T 2x1g_F 608 FSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST----------LFSSLNTDV-DE-Q 675 (971)
T ss_dssp HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH----------HHHHHTC-------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------HHhhcCCCc-Cc-c
Confidence 99999998876 5577888888888887654 11 22233333444443321 112222110 00 0
Q ss_pred HHHH--HHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000167 990 RKDL--FDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1972)
Q Consensus 990 R~~~--l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1972)
+.+. -.-+..++ ..+.+.+.-++.... .+.+|.+.+..++..++..+|.+ +.+++
T Consensus 676 ~~~~~~~~~~~~~~------~~i~~~l~~~l~~~~-~~~~v~e~~~~~~~~~~~~~~~~-~~p~l 732 (971)
T 2x1g_F 676 ATDQPIVQPVLLVM------QRTMPIFKRIAEMWV-EEIDVLEAACSAMKHAITNLRSS-FQPML 732 (971)
T ss_dssp --------CCHHHH------HTTHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHC---CTHH
T ss_pred cccccCCCchHHHH------HHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhhhhh-ccccH
Confidence 0000 00000001 123444444444332 46789999999999999988875 56664
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-08 Score=131.51 Aligned_cols=379 Identities=12% Similarity=0.078 Sum_probs=253.7
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhcc-cc-c-----hhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NL-D-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~-~~-~-----~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (1972)
+.+++.|.+.++..|..|+..|..++.... +. . ...+.++.+|. .+.+..++..++.+|..++...+.
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~-----~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT-----REDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC-----CCCCHHHHHHHHHHHHHHhCCCHH
Confidence 678899999999999999999998876532 11 1 12345565553 122378888899999888763211
Q ss_pred CchhhH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh--hH-----HHHHHHHhhhhCCChHHHHHHHHHHHHHH
Q 000167 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1972)
Q Consensus 677 ~~~~~~-~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~--~~-----vl~~l~~~l~~~KnpKv~~e~l~~L~~~i 746 (1972)
.....+ ..+++.|+.-+.+ ..++..|..+|..++..... .. ++..++..+..+.++.++..++..|..+.
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111111 1367888887765 46899999999999864221 11 35566666546789999999999999887
Q ss_pred HHhCCCC-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCC
Q 000167 747 EDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPK 825 (1972)
Q Consensus 747 ~~fG~~~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~ 825 (1972)
....... .-...+++.+..+ +.+.++.||..|..+++.|-....... +.+- .
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~------------~~~~----~---------- 284 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDKI------------QAVI----E---------- 284 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHHH------------HHHH----H----------
T ss_pred cCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHH------------HHHH----H----------
Confidence 6432111 1135678888888 999999999999998887743211101 0000 0
Q ss_pred CccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc
Q 000167 826 KTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (1972)
Q Consensus 826 r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~ 905 (1972)
..+.+.++..+.+.+|.+|..|+..|..++.........-.-..++..|...|.
T Consensus 285 --------------------------~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 285 --------------------------AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp --------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred --------------------------cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc
Confidence 002356778888899999999999999887521100000000346778888888
Q ss_pred cc-hHHHHHHHHHHHHHHHHHcChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhHHH
Q 000167 906 DS-NKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPY 975 (1972)
Q Consensus 906 Ds-N~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l--------~~ll~~ 975 (1972)
+. +..++..|+.+|+.|+..-........ ..++|.++..|.+....++..|..+|..++...+. ..+++.
T Consensus 339 ~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 418 (528)
T 4b8j_A 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 418 (528)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 87 899999999999999863222222222 36789999999999999999999999999887431 246778
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHhccCCC--------CCChhh------hHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 976 VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 976 l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--------~~~~~~------ll~pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
+...|.+. ++.++..++..|...+..... ...+.. .+..+.....+.+.+|++.|..++..+..
T Consensus 419 L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 419 LCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 88888875 688888888777766542211 001111 13346667789999999999998887654
Q ss_pred H
Q 000167 1042 A 1042 (1972)
Q Consensus 1042 ~ 1042 (1972)
.
T Consensus 497 ~ 497 (528)
T 4b8j_A 497 D 497 (528)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-06 Score=114.38 Aligned_cols=341 Identities=11% Similarity=0.091 Sum_probs=183.2
Q ss_pred HHHHHHHHhhccCCC--CchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcC-CCh
Q 000167 31 ANIDLAALCDSITDP--KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRP 107 (1972)
Q Consensus 31 ayeel~~~~~~~~d~--~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~-~k~ 107 (1972)
++.++++.+++.... .......-..-+++-+.+.+....-.++.-+..+.-. |.+....+.+++ |++. .+-
T Consensus 11 ~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~-G~d~~~~~~~vi-----k~~~s~~~ 84 (618)
T 1w63_A 11 RLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHML-GYPAHFGQLECL-----KLIASQKF 84 (618)
T ss_dssp CHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHT-TCCCGGGHHHHH-----HHHHSSSH
T ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHc-CCCCcchHHHHH-----HHHcCCch
Confidence 356777777653210 0011122233445556665555555555555544333 333333333444 3333 466
Q ss_pred hHHHHHHHHHHHHHhhhhhh---hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCCChhH
Q 000167 108 KTVEKAQAVFMLWVELEAVD---VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNV 184 (1972)
Q Consensus 108 ~~k~~a~~~ll~~~E~~~~~---~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~V 184 (1972)
..|..+--.+..|.+. +++ -++..|.+.+.++||-++..++.+|..+ |...+ ...+++.+.++|.|+++.|
T Consensus 85 ~~Krl~Yl~~~~~~~~-~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~~~~-~~~l~~~l~~~L~~~~~~V 158 (618)
T 1w63_A 85 TDKRIGYLGAMLLLDE-RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCM----GSSEM-CRDLAGEVEKLLKTSNSYL 158 (618)
T ss_dssp HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHH----CCHHH-HHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhc----CCHHH-HHHHHHHHHHHHcCCCHHH
Confidence 6777665455555532 344 3567888899999999999999998765 32111 3567899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCC
Q 000167 185 RASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTA 264 (1972)
Q Consensus 185 R~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~ 264 (1972)
|..|..++..+|+...+ .+.. +++.+
T Consensus 159 Rk~A~~al~~l~~~~p~-~v~~-~~~~l---------------------------------------------------- 184 (618)
T 1w63_A 159 RKKAALCAVHVIRKVPE-LMEM-FLPAT---------------------------------------------------- 184 (618)
T ss_dssp HHHHHHHHHHHHHHCGG-GGGG-GGGGT----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHChH-HHHH-HHHHH----------------------------------------------------
Confidence 99999999999986532 2211 11100
Q ss_pred CCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcC-CCC---CCCChHHHHHHHHHHhc-----
Q 000167 265 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRI---APGDFTEVCRTLKKLIT----- 335 (1972)
Q Consensus 265 ~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki---~~~~y~~l~~~L~k~l~----- 335 (1972)
.+.+.+.+-..+..|+..|..+... |.. ...-...++..|...+.
T Consensus 185 --------------------------~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~ 238 (618)
T 1w63_A 185 --------------------------KNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSP 238 (618)
T ss_dssp --------------------------TTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCT
T ss_pred --------------------------HHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 0111222222233333333333210 100 00011123333333211
Q ss_pred ------ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHh---ccCcHHHHHHHHHHHHHHHHhcCCCh---Hh
Q 000167 336 ------DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL---KEKKPTVAESLTQTLQAMHKAGCLNL---VD 403 (1972)
Q Consensus 336 ------D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl---kdkk~~V~~aa~~aL~al~~~~~~~l---~~ 403 (1972)
..+.-+....+++++.++..- +........+++.++... +.....|+ .+|+.+++.- .... ..
T Consensus 239 ~~~~~~~~~~~~q~~il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~---~ea~~~i~~l-~~~~~l~~~ 313 (618)
T 1w63_A 239 EHDVSGISDPFLQVRILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAIL---YETVLTIMDI-KSESGLRVL 313 (618)
T ss_dssp TTCSSSSSCHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHH---HHHHHHHHHS-CCCHHHHHH
T ss_pred cccccCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhc-CCCHHHHHH
Confidence 124444444556666555321 111112223444444432 12222333 3344444432 1111 13
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 404 il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
.++.+...+.++++.+|..++.+|..+....+. .+....+.+..|+.|.+..||..|.+++..+.
T Consensus 314 a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-----~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~ 378 (618)
T 1w63_A 314 AINILGRFLLNNDKNIRYVALTSLLKTVQTDHN-----AVQRHRSTIVDCLKDLDVSIKRRAMELSFALV 378 (618)
T ss_dssp HHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-----HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-----HHHHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 456666778889999999999999988765432 23556778899999999999999888776543
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.89 E-value=0.00016 Score=101.00 Aligned_cols=328 Identities=9% Similarity=0.075 Sum_probs=184.5
Q ss_pred CChHHHHHHHHHHHHHHHhcc----ccc------hhHHHHHHHHhcCCCCccc---hHHHHHHHHHHHHHHHHHcCCCch
Q 000167 613 AVWKERLEAISSLRQQVEAVQ----NLD------QSVEILVRLVCMLPGWSEK---NVQVQQQVIEVINYLAATATKFPK 679 (1972)
Q Consensus 613 ~~Wk~Rl~a~e~L~~~v~~~~----~~~------~~~~~lv~~L~~~p~~~Ds---N~qV~~~~Le~l~~l~~~~~~~~~ 679 (1972)
.+|+.|.+|+..++.+..+.. ... ...+.+...+ .|.+.|. +..|...++.++..+.+. +.+
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v--~p~l~~~~~~~p~vr~~a~~~lg~~~~~---~~~ 491 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI--APDLTSNNIPHIILRVDAIKYIYTFRNQ---LTK 491 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT--HHHHHCSSCSCHHHHHHHHHHHHHTGGG---SCH
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh--HHHhcCCCCCCceehHHHHHHHHHHHhh---CCH
Confidence 479999999999998865421 010 1112222222 1345555 889999999998877764 345
Q ss_pred hhHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhcC----------h-------hHHHHHHHHhhhhCC---ChH--HH
Q 000167 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVG----------P-------GFIFERLYKIMKDHK---NPK--VL 735 (1972)
Q Consensus 680 ~~~~~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~----------~-------~~vl~~l~~~l~~~K---npK--v~ 735 (1972)
..+..+++.++..+.|. .++..|..+|..+++... . ..+++.++..+ +.. .++ ..
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll-~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI-LKHGSSPEKLAEN 570 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH-HTTCCCHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH-HhccCCCCccccc
Confidence 67888999999988884 578999999999988421 1 22444444443 221 123 34
Q ss_pred HHHHHHHHHHHHHhCCCCCC-hhhHHH----HHHhcCCCCCchhHHHHHHHHHHHHHHhhChh-HHhhhhcccHHHHHHH
Q 000167 736 SEGILWMVSAVEDFGVSHLK-LKDLID----FCKDTGLQSSAAATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSAL 809 (1972)
Q Consensus 736 ~e~l~~L~~~i~~fG~~~l~-~k~li~----~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~-l~~~L~~lkp~ll~~L 809 (1972)
...+..|..++..++....+ ...+++ .+....-+..++..+....++++.+.+..|+. +..+.+.+-|.+...+
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL 650 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 56677788888777654332 223333 33332013457788888999999998887754 3344455555555544
Q ss_pred HHHHhcCCCCCCCCCC---CccccccccCCCCCCCCCCCCcccccccccHHHH--HhcCCCCHHHHHHHHHHHHHHHHHc
Q 000167 810 DAEYEKNPFEGTVVPK---KTVRASESTSSVSSGGSDGLPREDISGKFTPTLV--KSLESPDWKVRLESIEAVNKILEEA 884 (1972)
Q Consensus 810 e~efek~~~~~~~~p~---r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll--~~l~d~~Wk~R~eale~l~~ll~~a 884 (1972)
+....... +.... .-.... +.++. ....+-+-++ ..+....|- -..+..+...+...
T Consensus 651 ~~~~~~~~---~~~~~i~~~l~~~~-----------~~~~~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~~~~~~ 712 (960)
T 1wa5_C 651 SEDIQEFI---PYVFQIIAFVVEQS-----------ATIPE--SIKPLAQPLLAPNVWELKGNI--PAVTRLLKSFIKTD 712 (960)
T ss_dssp HTTCTTTH---HHHHHHHHHHHHHC-----------SSCCT--TTGGGHHHHTSGGGGCCTTTH--HHHHHHHHHHHHHH
T ss_pred HhhhHhhH---HHHHHHHHHHHHhc-----------cCCCH--HHHHHHHHHcCHHHhcCCCCc--hhHHHHHHHHHHhC
Confidence 32110000 00000 000000 00000 0111112222 222222221 13444555555433
Q ss_pred cccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChh-hHhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHHH
Q 000167 885 NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDA 962 (1972)
Q Consensus 885 ~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~-~~~~~~~llp~ll~~L~D~k-~~Vr~Aa~~aL~~ 962 (1972)
...+.. ...++..+...+.+.+. ...|+.+++.++..++.. |.+|+..+++.++..+...+ ..++.+....+..
T Consensus 713 ~~~~~~--~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~ 788 (960)
T 1wa5_C 713 SSIFPD--LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGL 788 (960)
T ss_dssp GGGCSC--SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHH
T ss_pred hHHHHH--HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHH
Confidence 223332 24466666666655432 378899999999999999 99999999999999987664 4455454444444
Q ss_pred HHHhcC
Q 000167 963 WLAAVH 968 (1972)
Q Consensus 963 i~~~~~ 968 (1972)
++-..+
T Consensus 789 ~~~~~~ 794 (960)
T 1wa5_C 789 ISNKLG 794 (960)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 443334
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-06 Score=119.10 Aligned_cols=492 Identities=12% Similarity=0.071 Sum_probs=286.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (1972)
+|.++..++.....++.++...+...-.. +. ....++.|...|.+.++.+|..++..|..+.............+.++
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~-~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA-EL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH-HH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 67778888887777777766666544221 11 14578888888899999999999999887654321111111124678
Q ss_pred HHHHHHhcCC-ChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCC
Q 000167 448 PICMECLNDG-TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSV 526 (1972)
Q Consensus 448 p~l~k~l~Ds-~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~ 526 (1972)
+.|+..|.+. ++++|..|..+|..+... .. . +..|.+ . +
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~---~~----------~-~~~i~~---~-g---------------------- 234 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHH---RE----------G-LLAIFK---S-G---------------------- 234 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTS---HH----------H-HHHHHH---T-T----------------------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCC---ch----------h-HHHHHH---c-C----------------------
Confidence 8899888644 999999999998765432 10 0 111111 0 0
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHH
Q 000167 527 EASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADT 606 (1972)
Q Consensus 527 ~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l 606 (1972)
.-+.+
T Consensus 235 ---------------------------------------------------------------------------~I~~L 239 (780)
T 2z6g_A 235 ---------------------------------------------------------------------------GIPAL 239 (780)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------CHHHH
Confidence 00234
Q ss_pred HHhhhcCChHHHHHHHHHHHHHHHhccccc------hhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchh
Q 000167 607 VGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (1972)
Q Consensus 607 ~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~ 680 (1972)
+..|.+.+...|..|+..|..+........ .....++.+ +++.|..|...+++++..++..+......
T Consensus 240 v~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l------L~~~~~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 240 VNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL------LNKTNVKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG------GGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH------HhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 556666677778888888887765532211 112334443 34567778888888877665321100000
Q ss_pred -hHHHHHHHHHhhhcc---hhhhHHHHHHHHHHHhhcCh--h----HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhC
Q 000167 681 -CVVLCLLGISERVAD---IKTRAHAMKCLTTFSEAVGP--G----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750 (1972)
Q Consensus 681 -~~~~il~~LveKlgd---~K~r~~a~~~L~~l~e~~~~--~----~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG 750 (1972)
.-...++.|+.-+.+ ...+..+..+|..++..... . -++..++..+ .+.++.++..++..|..+.....
T Consensus 314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~ 392 (780)
T 2z6g_A 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT 392 (780)
T ss_dssp HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhccch
Confidence 001234555554443 23456667777777743211 1 1245555554 56688999999988888876443
Q ss_pred CCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000167 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (1972)
Q Consensus 751 ~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~ 830 (1972)
. ......+++.+..+ +.+.++.||..|..+|+.|-... +..+..+ -+..
T Consensus 393 ~-~~~~~~~i~~Lv~l-L~~~d~~vr~~A~~aL~~L~~~~-~~~~~~i---------------~~~g------------- 441 (780)
T 2z6g_A 393 K-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCNN-YKNKMMV---------------CQVG------------- 441 (780)
T ss_dssp T-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSC-HHHHHHH---------------HTTT-------------
T ss_pred h-hhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCC-HHHHHHH---------------HHCC-------------
Confidence 2 22346788888888 99999999999999998774321 1111111 0000
Q ss_pred ccccCCCCCCCCCCCCcccccccccHHHHHhcCC-CCH-HHHHHHHHHHHHHHHHcc------ccCCCCChhhHHHHHHh
Q 000167 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDW-KVRLESIEAVNKILEEAN------KRIQPAGTGELFGGLRG 902 (1972)
Q Consensus 831 ~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d-~~W-k~R~eale~l~~ll~~a~------~~I~~~~~~eL~~~L~~ 902 (1972)
..+.|+..+.+ .+| .+|..|+..|..|..... ..+.. ...+..|..
T Consensus 442 -----------------------~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~---~~~l~~L~~ 495 (780)
T 2z6g_A 442 -----------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL---HYGLPVVVK 495 (780)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH---TTCHHHHHH
T ss_pred -----------------------CHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH---cCCHHHHHH
Confidence 01223333332 233 677788877776642100 00000 234677777
Q ss_pred ccccchH-HHHHHHHHHHHHHHHHcChhhHhhh--hhHHHHHHHHhCCCc----------------------HHHHHHHH
Q 000167 903 RLYDSNK-NLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNK----------------------KHMRECTL 957 (1972)
Q Consensus 903 ~L~DsN~-~V~~~Al~~l~~La~alg~~~~~~~--~~llp~ll~~L~D~k----------------------~~Vr~Aa~ 957 (1972)
.|.+.+. .++..|+.+|+.|+. +......+ ..++|.++..|.+.. ..++.++.
T Consensus 496 lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~ 573 (780)
T 2z6g_A 496 LLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACT 573 (780)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHH
Confidence 8876654 899999999999974 33222221 246788887775532 34666777
Q ss_pred HHHHHHHHh------cCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC-CCh--hhhHHHHHhhcCCCCHHH
Q 000167 958 TVLDAWLAA------VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAMTDKSSDV 1028 (1972)
Q Consensus 958 ~aL~~i~~~------~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~-~~~--~~ll~pl~~~L~D~~~dV 1028 (1972)
.||..+... +.-..+++.|...|.+. ++.++..++..|...... +.. ..+ ...+.+|...+.|.+.+|
T Consensus 574 ~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~V 650 (780)
T 2z6g_A 574 GALHILARDIHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGV 650 (780)
T ss_dssp HHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--CHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 777765421 00133577888888876 688888888777655421 110 011 124566888899999999
Q ss_pred HHHHHHHHHHHHHHcCh
Q 000167 1029 RKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 1029 R~aA~~~l~~l~~~~G~ 1045 (1972)
|.+|..+|..+...-+.
T Consensus 651 r~~A~~aL~~l~~~~~~ 667 (780)
T 2z6g_A 651 ATYAAAVLFRMSEDKPQ 667 (780)
T ss_dssp HHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHcCChH
Confidence 99999999988876553
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.9e-06 Score=115.39 Aligned_cols=518 Identities=13% Similarity=0.069 Sum_probs=297.0
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhh-hhhhH
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFL 367 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~l 367 (1972)
.+...+.+.+...|..++..++.+.. ..+ -...++.|.+.+.+.+..|+..|+.+|..|+..-.....- ....+
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~~-~~i----~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQDD-AEL----ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhhH-HHH----HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 57777888888888888887765421 111 1456777888888889999999999999998743221111 12468
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHHHHHhc----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000167 368 LPVLLEKLKEK-KPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1972)
Q Consensus 368 lp~LL~klkdk-k~~V~~aa~~aL~al~~~~----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (1972)
++.|+..+++. ...++..+..+|..+.... ...-..+++.|...+++.++.+|..++..|..+........ ...
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MAV 272 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH-HHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH-HHH
Confidence 99999998754 7889999989998865320 00012467888899999999999999999999876543221 111
Q ss_pred -hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCC
Q 000167 443 -HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (1972)
Q Consensus 443 -l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (1972)
-...+|.++++|.+.+..||..+..++..+.. +.......+-.-+. ...+...+...
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~--i~~Lv~lL~~~------------------ 330 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGG--PQALVNIMRTY------------------ 330 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTH--HHHHHHHHTTC------------------
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCC--HHHHHHHHhcC------------------
Confidence 14688999999999999999999999986652 32211111100000 00111111000
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhcc
Q 000167 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (1972)
Q Consensus 522 s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l 601 (1972)
+.+.....+
T Consensus 331 --------------------------------------------------------------------~~~~~~~~a--- 339 (780)
T 2z6g_A 331 --------------------------------------------------------------------TYEKLLWTT--- 339 (780)
T ss_dssp --------------------------------------------------------------------CCHHHHHHH---
T ss_pred --------------------------------------------------------------------CHHHHHHHH---
Confidence 000000000
Q ss_pred CcHHHHHhhhc-CChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchh
Q 000167 602 IPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (1972)
Q Consensus 602 l~~~l~~~L~s-~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~ 680 (1972)
..++..|.. ...+.. ++.. .....++.+ +.+.+..+...++.++..++.......
T Consensus 340 --~~aL~~Ls~~~~~~~~---------i~~~-----g~l~~Ll~l------L~~~~~~~~~~a~~~L~~L~~~~~~~~-- 395 (780)
T 2z6g_A 340 --SRVLKVLSVCSSNKPA---------IVEA-----GGMQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE-- 395 (780)
T ss_dssp --HHHHHHHHTSTTHHHH---------HHHT-----THHHHHGGG------TTCSCHHHHHHHHHHHHHHHTTCTTCS--
T ss_pred --HHHHHHhhcChHHHHH---------HHHh-----chHHHHHHH------HcCCchHHHHHHHHHHHHHhccchhhh--
Confidence 001111111 111100 0000 012223322 345566777888888888876443321
Q ss_pred hHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh-------hHHHHHHHHhhhhCCC-hHHHHHHHHHHHHHHHHhC
Q 000167 681 CVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKN-PKVLSEGILWMVSAVEDFG 750 (1972)
Q Consensus 681 ~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~-------~~vl~~l~~~l~~~Kn-pKv~~e~l~~L~~~i~~fG 750 (1972)
....+++.|+..+.+ ..++..|..+|..++..... .-.+..++..+....+ ..++..++..|..+....+
T Consensus 396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 234577888877654 56788888888887653211 1245666666544333 4889888888887642111
Q ss_pred CC-----CCChhhHHHHHHhcCCCCCch-hHHHHHHHHHHHHHHhhChhHHhhh--hcccHHHHHHHHHHHhcCCCCCCC
Q 000167 751 VS-----HLKLKDLIDFCKDTGLQSSAA-ATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTV 822 (1972)
Q Consensus 751 ~~-----~l~~k~li~~l~~~gL~~sn~-~VR~aA~~ll~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~efek~~~~~~~ 822 (1972)
.. .+-....++.+..+ |.+.+. .||.+|..+|+.|.. ++.....+ .++-|.+.+.+......++.+..-
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~l-L~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~ 552 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhh
Confidence 10 00001235556666 777775 999999999999864 44333333 345677777776543222110000
Q ss_pred CCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHc-c-ccCCCCChhhHHHHH
Q 000167 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-N-KRIQPAGTGELFGGL 900 (1972)
Q Consensus 823 ~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a-~-~~I~~~~~~eL~~~L 900 (1972)
+ .+... +.. +.....++..++..|..+.... + ..+.. ...+..|
T Consensus 553 a----------------l~nq~---------~~~------~~~~~~v~~~a~~aL~~La~~~~~~~~l~~---~~~i~~L 598 (780)
T 2z6g_A 553 G----------------GTQQQ---------FVE------GVRMEEIVEACTGALHILARDIHNRIVIRG---LNTIPLF 598 (780)
T ss_dssp ---------------------C---------CST------TCCHHHHHHHHHHHHHHHTTSHHHHHHHHH---TCCHHHH
T ss_pred c----------------cccch---------hhc------ccChHHHHHHHHHHHHHHhcChhhHHHHHH---CCcHHHH
Confidence 0 00000 000 0011234555566665543210 0 00111 3357788
Q ss_pred HhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh--HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000167 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 901 ~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
...|.+.+..|+..|+.++..++. .+.....+.. .++.++..+.+.+..||..|..+|..+....+
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 889999999999999999988862 2333333333 67888999999999999999999999887654
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.8e-05 Score=99.62 Aligned_cols=610 Identities=14% Similarity=0.111 Sum_probs=361.4
Q ss_pred ccCChHHHHHHHHHHHHHhcC----CCCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhhhchhhh-hhhHH
Q 000167 295 KATKWSERKDAVAELTKLAST----KRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLL 368 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~----~ki~~~~y~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ll 368 (1972)
.+.+-..|..|+..|.=|+.. .+|... +-+..|.+.+.+ .|.-++..|++++..||++=+..-... -..=+
T Consensus 18 ~~~~~~~~~~a~~nl~vl~re~aga~~i~~~---~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~ 94 (810)
T 3now_A 18 LATPIDKRRAAANNLVVLAKEQTGAELLYKD---HCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGV 94 (810)
T ss_dssp SCCSSHHHHHHHHHHHHHSSCHHHHHHHHHT---THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred cccCHHHHHHHHhhceeeeccccchHHHHhC---chHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCH
Confidence 455666778888888776631 122221 124566667774 889999999999999998754332222 22335
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHh--cC-----------------CChHhHHHHHHHHhhcCC--hHHHHHHHHHH
Q 000167 369 PVLLEKLKEKKPTVAESLTQTLQAMHKA--GC-----------------LNLVDVVEDVKTSVKNKV--PLVRSLTLNWV 427 (1972)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~--~~-----------------~~l~~il~~l~~~l~~Kn--p~vR~~~l~~L 427 (1972)
|.++..+.-+...+..++..++..++.. +. ..++.++..++..+.+++ ...|-.+++.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~ 174 (810)
T 3now_A 95 PWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELI 174 (810)
T ss_dssp HHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHH
Confidence 6677777778888888888888888865 11 113445666667777655 79999999999
Q ss_pred HHHHHhcChh---HH-H-HhhhhHHHHHHHHhcCC--------ChHHHHHHHHHHHHHHHHhCchhH-HHhHhhccHHHH
Q 000167 428 TFCIETSSKA---AV-L-KVHKDYVPICMECLNDG--------TPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRR 493 (1972)
Q Consensus 428 ~~~l~~~~~~---~l-~-~~l~~l~p~l~k~l~Ds--------~~~VR~aA~~~l~~l~~~~ge~~~-~~~l~~Ld~~~~ 493 (1972)
.+.+.+.... .+ . ..++.++.+... +.+. .+++|..+.-|+..++.-.+.+.- +.|-
T Consensus 175 ~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~-~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-------- 245 (810)
T 3now_A 175 TRNVHYTALEWAERLVEIRGLCRLLDVCSE-LEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFT-------- 245 (810)
T ss_dssp HHHTTCTTTTHHHHHHHTTHHHHHHHHHTC-CSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHH--------
T ss_pred HHhCCccccccccchhhHhhHHHHHHHHhc-CccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHH--------
Confidence 9888554311 11 1 233444433222 2333 678999999999999988884321 1222
Q ss_pred HHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCccccccc-ccccc-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 494 NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK-SAASM-LSGKRPVSAAPASKKGGPVKPSAKKDGSGK 571 (1972)
Q Consensus 494 kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~-~~~s~-~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~ 571 (1972)
+.+.+++...-. .+. ....++. ++.+. ++ |
T Consensus 246 ~~~~~~~~~~~~-----~~~----------------~~~~~~a~~alt~i~~-------------------g-------- 277 (810)
T 3now_A 246 DQIDEYIKDKLL-----APD----------------MESKVRVTVAITALLN-------------------G-------- 277 (810)
T ss_dssp HHHHHHHHHHHS-----SCC----------------HHHHHHHHHHHHHHHS-------------------S--------
T ss_pred HHHHHHHHHHhc-----cCC----------------hHhHHHHHHHHHHHhc-------------------C--------
Confidence 223333321000 000 0000000 00000 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHh-hccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCC
Q 000167 572 QETSKLTEAPEDVEPSEMSLEEIESRL-GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP 650 (1972)
Q Consensus 572 ~~~s~~~~~~~~~~~~~~s~ee~e~~~-~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p 650 (1972)
..+...... .+-+-+.++..+.|.+-..+..|++.|..........+...+.-+.+|..
T Consensus 278 ------------------~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~-- 337 (810)
T 3now_A 278 ------------------PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKR-- 337 (810)
T ss_dssp ------------------SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHH--
T ss_pred ------------------CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHH--
Confidence 011111111 11122677889999999999999999987644321111011111133321
Q ss_pred CCccchHHHHHHHHHHHHHHHHHc------CCCchhhHHHHHHHHHhhhcch----hhhHHHHHHHHHHHhhcC------
Q 000167 651 GWSEKNVQVQQQVIEVINYLAATA------TKFPKKCVVLCLLGISERVADI----KTRAHAMKCLTTFSEAVG------ 714 (1972)
Q Consensus 651 ~~~DsN~qV~~~~Le~l~~l~~~~------~~~~~~~~~~il~~LveKlgd~----K~r~~a~~~L~~l~e~~~------ 714 (1972)
.++..+..+...++-+|..+.... ..|....+..+++.++.-+.+. ..+..|.++|..++....
T Consensus 338 Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv 417 (810)
T 3now_A 338 LYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLI 417 (810)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 234455566677777777776321 2244344566677777666544 478888888888864321
Q ss_pred -hhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCC---------------CCC----------hh---------hH
Q 000167 715 -PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---------------HLK----------LK---------DL 759 (1972)
Q Consensus 715 -~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~---------------~l~----------~k---------~l 759 (1972)
-.-+++.|+..+ ++.++.++.+++..|.++...+-.. .++ ++ ..
T Consensus 418 ~d~g~Ip~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGa 496 (810)
T 3now_A 418 EDKASIHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGI 496 (810)
T ss_dssp HCHHHHHHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTH
T ss_pred HccchHHHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcC
Confidence 122456666665 5678999999999999998743100 000 11 24
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCC
Q 000167 760 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (1972)
Q Consensus 760 i~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~ 839 (1972)
++.+..+ +.+.++.||..|..++..|-. .+..+..+ -+ .+
T Consensus 497 Vp~LV~L-L~s~s~~vqe~Aa~aL~NLA~--d~~~r~~V-----------v~-------~G------------------- 536 (810)
T 3now_A 497 TTALCAL-AKTESHNSQELIARVLNAVCG--LKELRGKV-----------VQ-------EG------------------- 536 (810)
T ss_dssp HHHHHHH-HTCCCHHHHHHHHHHHHHHHT--SHHHHHHH-----------HH-------TT-------------------
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHHcC--CHHHHHHH-----------HH-------CC-------------------
Confidence 5556666 888889999999988877742 11222211 00 00
Q ss_pred CCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC--hhhHHHHHHhccc-cchHHHHHHHH
Q 000167 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG--TGELFGGLRGRLY-DSNKNLVMATL 916 (1972)
Q Consensus 840 ~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~--~~eL~~~L~~~L~-DsN~~V~~~Al 916 (1972)
..+.|+..+.+.....|..|...|..++...++.+.... ..+.++.|...|. |.+......|+
T Consensus 537 --------------aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl 602 (810)
T 3now_A 537 --------------GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602 (810)
T ss_dssp --------------HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHH
T ss_pred --------------CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHH
Confidence 112355555556667889999999998875433321111 1346778888775 33434456788
Q ss_pred HHHHHHHHHcChhhHhhhh-hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----c--hhhHHHHHHHHhcCCCChh
Q 000167 917 ITLGAVASAMGPAVEKSSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----L--DKMVPYVTTALTDAKLGAE 988 (1972)
Q Consensus 917 ~~l~~La~alg~~~~~~~~-~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-----l--~~ll~~l~~~L~~~~~~~~ 988 (1972)
.+|..|+..-...-...++ ..+|.++..+.+.+..|+.+|..++..++..-. . ...++.+...+.+. +..
T Consensus 603 ~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~--d~~ 680 (810)
T 3now_A 603 MALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE--DEE 680 (810)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS--SHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC--CHH
Confidence 8888887542111112222 478999999999999999999999998874311 1 24567777777765 577
Q ss_pred HHHHHHHHHHHHhccCCC-CCCh---hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 989 GRKDLFDWLSKQLTGLSG-FPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~-~~~~---~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
+|.+++..|...-...+. ...+ ...+.+|+..|.+.+.+||+.|..++..+..
T Consensus 681 vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 681 TATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 888887666544332221 0111 2466778899999999999999999988765
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-05 Score=105.69 Aligned_cols=487 Identities=13% Similarity=0.066 Sum_probs=282.9
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhc--C--C
Q 000167 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAG--C--L 399 (1972)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdk-k~~V~~aa~~aL~al~~~~--~--~ 399 (1972)
.++.|...+.+.+..++..|+.+|+.|+..-.....-. ...+++.|+..+.+. ...++..+..+|..+.... . .
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 35566667778899999999999999997553221111 236789999999765 7888888888888765320 0 0
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 400 ~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
.-..+++.+...+++.++.++..++..|..+....... .... -...+|.|+++|.+.++.++..+..+|+.+.. +.
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~-~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~ 171 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GN 171 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH-HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TC
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh-HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh--cC
Confidence 00146788889999999999999999999987654322 1112 25689999999999999999999999987764 32
Q ss_pred hhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCC
Q 000167 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (1972)
Q Consensus 479 ~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~ 558 (1972)
......+-.... ...+.+.+...
T Consensus 172 ~~~~~~i~~~g~--v~~Lv~lL~~~------------------------------------------------------- 194 (644)
T 2z6h_A 172 QESKLIILASGG--PQALVNIMRTY------------------------------------------------------- 194 (644)
T ss_dssp HHHHHHHHHTTH--HHHHHHHHTTC-------------------------------------------------------
T ss_pred cHHHHHHHHcCC--hHHHHHHHHcC-------------------------------------------------------
Confidence 211111111000 00111111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchh
Q 000167 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS 638 (1972)
Q Consensus 559 ~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~ 638 (1972)
+.+++...+ ..++..|... -..|.. +++. ..
T Consensus 195 -------------------------------~~~~~~~~a-----~~~L~nLs~~-~~~~~~-------l~~~-----g~ 225 (644)
T 2z6h_A 195 -------------------------------TYEKLLWTT-----SRVLKVLSVC-SSNKPA-------IVEA-----GG 225 (644)
T ss_dssp -------------------------------CCHHHHHHH-----HHHHHHHTTC-TTHHHH-------HHHT-----TH
T ss_pred -------------------------------ChHHHHHHH-----HHHHHHHhcC-cccHHH-------HHHC-----CC
Confidence 001110000 0111111110 001100 0000 01
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh-
Q 000167 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP- 715 (1972)
Q Consensus 639 ~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~- 715 (1972)
.+.++.+ +.+.+..+...++.+|..+....+.. .....+++.|+.-+.+ ..++..+..+|..++.....
T Consensus 226 l~~L~~l------l~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~ 297 (644)
T 2z6h_A 226 MQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 297 (644)
T ss_dssp HHHHHTT------TTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHH------HhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 2233332 34456778888888888877643322 1234577777776654 56788888888888763211
Q ss_pred ------hHHHHHHHHhhhhCC-ChHHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCCc-hhHHHHHHHH
Q 000167 716 ------GFIFERLYKIMKDHK-NPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSA-AATRNATIKL 782 (1972)
Q Consensus 716 ------~~vl~~l~~~l~~~K-npKv~~e~l~~L~~~i~~fG~~~-----l~~k~li~~l~~~gL~~sn-~~VR~aA~~l 782 (1972)
.-+++.++..+.... .+.++..++..|..+....+... +--...++.+..+ |.+.+ +.||.+|..+
T Consensus 298 ~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l-L~~~~~~~v~~~a~~~ 376 (644)
T 2z6h_A 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGL 376 (644)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT-TSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH-hCccCchHHHHHHHHH
Confidence 114566666654333 48999999998888753211100 0001356667777 88775 7999999999
Q ss_pred HHHHHHhhChhHHhhh--hcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHH
Q 000167 783 LGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (1972)
Q Consensus 783 l~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~ 860 (1972)
++.|.. ++.....+ .+.-|.+.+.+.....+++.+..-+ . +.+. +..
T Consensus 377 L~nLa~--~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~a----------l------~n~~-----~~~-------- 425 (644)
T 2z6h_A 377 IRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG----------G------TQQQ-----FVE-------- 425 (644)
T ss_dssp HHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-------------------------------CC--------
T ss_pred HHHHcc--CHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhc----------c------ccch-----hcc--------
Confidence 988864 33322222 4566777777776544443211000 0 0000 000
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh--h
Q 000167 861 SLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--G 936 (1972)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~ll~~a~--~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~--~ 936 (1972)
+..+..++..++..|..+..... ..+. -...+..|...|.+.+..++..|+.++..++.. +.....+. .
T Consensus 426 --~~~~~~v~~~a~~aL~~La~~~~~~~~l~---~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g 498 (644)
T 2z6h_A 426 --GVRMEEIVEGCTGALHILARDVHNRIVIR---GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEG 498 (644)
T ss_dssp --SSCHHHHHHHHHHHHHHHTTSHHHHHHHH---HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTT
T ss_pred --cccHHHHHHHHHHHHHHHhcCHHHHHHHH---hCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcC
Confidence 00123445556666665543110 0010 134667888888899999999999998888742 22332222 2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.++.+...+.+.++.||.+|..+|..+....+
T Consensus 499 ~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 499 ATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred ChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 46788899999999999999999988866553
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.63 E-value=9.7e-08 Score=128.85 Aligned_cols=194 Identities=18% Similarity=0.225 Sum_probs=154.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHc--ChhhHhhh
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM--GPAVEKSS 934 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~al--g~~~~~~~ 934 (1972)
++++.+...+-..|+++...+..++.+. .....-. ..++..|++.+.|.+.. ..|+..++.||... ++.+++|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGN-IIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSS-CSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhcc-ccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 4556666555667888888888887531 1111112 46889999999887655 89999999999655 45899999
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc---hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC-CCh
Q 000167 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL---DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA 1010 (1972)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l---~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~-~~~ 1010 (1972)
-.++|.++..++|+.+.||+||..++++++..++. ..++|.|..+|.+.. .|+.|..+|..+.......+.. ...
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~~~~~~~~~ 172 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETN-KWQEKIAILAAFSAMVDAAKDQVALR 172 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 99999999999999999999999999999999974 568999999998654 5999999999998877655321 122
Q ss_pred hhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000167 1011 AHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1972)
Q Consensus 1011 ~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1972)
.+.+.| +..|+.|..++|.++|.++|..++.++++..+.++++.|
T Consensus 173 ~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~ 218 (986)
T 2iw3_A 173 MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSL 218 (986)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHH
T ss_pred ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHH
Confidence 334445 777999999999999999999999999999999887543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-05 Score=101.52 Aligned_cols=482 Identities=13% Similarity=0.072 Sum_probs=269.6
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhc--C--C
Q 000167 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAG--C--L 399 (1972)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdk-k~~V~~aa~~aL~al~~~~--~--~ 399 (1972)
.++.|.+.+.+.+..++..|+.++..|+..-.....-. ....++.++..+... ...++..+..+|..+.... . .
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 56677777888899999999999999986432211111 135788999988754 7888888888888764320 0 0
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 400 ~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
.-...++.+...+++.++.++..++..|..+....+... ... -...+|.+++.+.+.++++|..+..++..+.. +.
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~--~~ 174 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GN 174 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH-HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TC
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH-HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh--CC
Confidence 011367888889999999999999999998776543211 111 24678999999999999999999999986653 32
Q ss_pred hhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCC
Q 000167 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (1972)
Q Consensus 479 ~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~ 558 (1972)
......+-.-+. ...+.+.+...
T Consensus 175 ~~~~~~i~~~~~--i~~L~~ll~~~------------------------------------------------------- 197 (529)
T 1jdh_A 175 QESKLIILASGG--PQALVNIMRTY------------------------------------------------------- 197 (529)
T ss_dssp HHHHHHHHHTTH--HHHHHHHHHHC-------------------------------------------------------
T ss_pred HHHHHHHHHCCC--HHHHHHHHHhC-------------------------------------------------------
Confidence 211111111000 00111111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchh
Q 000167 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS 638 (1972)
Q Consensus 559 ~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~ 638 (1972)
+.++....+ ..++..|.... ..|.. +++. ..
T Consensus 198 -------------------------------~~~~~~~~a-----~~~L~~l~~~~-~~~~~-------~~~~-----g~ 228 (529)
T 1jdh_A 198 -------------------------------TYEKLLWTT-----SRVLKVLSVCS-SNKPA-------IVEA-----GG 228 (529)
T ss_dssp -------------------------------CCHHHHHHH-----HHHHHHHTTST-THHHH-------HHHT-----TH
T ss_pred -------------------------------ChHHHHHHH-----HHHHHHHhcCc-ccHHH-------HHHC-----CC
Confidence 000000000 00111111100 00000 0000 01
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcC--
Q 000167 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG-- 714 (1972)
Q Consensus 639 ~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~-- 714 (1972)
.+.++.+ +.+.+..+...++.++..+....+... ....++|.|+.-+.+ ..++..+..+|..++....
T Consensus 229 ~~~L~~l------l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 300 (529)
T 1jdh_A 229 MQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300 (529)
T ss_dssp HHHHHTT------TTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHH------HhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 2223332 345567788888888888776433221 234567777776654 4678888888888765321
Q ss_pred h-----hHHHHHHHHhhhh-CCChHHHHHHHHHHHHHHHHhCCC-----CCChhhHHHHHHhcCCCCCc-hhHHHHHHHH
Q 000167 715 P-----GFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSA-AATRNATIKL 782 (1972)
Q Consensus 715 ~-----~~vl~~l~~~l~~-~KnpKv~~e~l~~L~~~i~~fG~~-----~l~~k~li~~l~~~gL~~sn-~~VR~aA~~l 782 (1972)
- .-+++.++..+.. ..++.++..++..|..+....+.. .+--...++.+..+ +.+.+ +.||..|..+
T Consensus 301 ~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l-L~~~~~~~v~~~a~~~ 379 (529)
T 1jdh_A 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGL 379 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH-hccccchHHHHHHHHH
Confidence 0 1245566666543 345899999999988775321110 00001235556666 78776 5999999998
Q ss_pred HHHHHHhhChhHHhhh--hcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHH
Q 000167 783 LGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (1972)
Q Consensus 783 l~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~ 860 (1972)
++.+-. ++.-...+ .++-|.+.+.+.....+++.+..-+ +... .+.....
T Consensus 380 l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~----l~n~-----------------~~~~~~~----- 431 (529)
T 1jdh_A 380 IRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG----GTQQ-----------------QFVEGVR----- 431 (529)
T ss_dssp HHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC--------------------------------CBTTBC-----
T ss_pred HHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcc----cCch-----------------hhhcccc-----
Confidence 888864 33333333 3556777777766544433211000 0000 0000000
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hh
Q 000167 861 SLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KG 936 (1972)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~ll~~a~--~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~ 936 (1972)
.-..+..++..+..++.... ..+.. ...+..|...+.|.+..++..|+.++..++.. +.....+ ..
T Consensus 432 -----~~~i~~~~~~al~~L~~~~~~~~~l~~---~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~ 501 (529)
T 1jdh_A 432 -----MEEIVEGCTGALHILARDVHNRIVIRG---LNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEG 501 (529)
T ss_dssp -----HHHHHHHHHHHHHHHTTSHHHHHHHHH---TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHHHhcCchHHHHHhc---cCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcC
Confidence 11223344444444432100 00111 23567788888999999999999888887621 2222222 13
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAW 963 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i 963 (1972)
.++.+...+.+.++.|+..|..+|..+
T Consensus 502 ~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 502 ATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 567788888888899999888887654
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.8e-05 Score=99.89 Aligned_cols=460 Identities=12% Similarity=0.057 Sum_probs=272.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhCchhHH
Q 000167 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG-TPEVRDAAFSVLAAIAKSVGMRPLE 482 (1972)
Q Consensus 404 il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds-~~~VR~aA~~~l~~l~~~~ge~~~~ 482 (1972)
.++.+...|++.++.+|..++..|..+..........-....+++.+++.|.++ ++++|..|..+|..+.. +..
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~---~~~-- 89 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH---HRE-- 89 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT---SHH--
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---Chh--
Confidence 567777777888889998888888876554321110011235788888888765 89999999888864432 110
Q ss_pred HhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000167 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 562 (1972)
Q Consensus 483 ~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~ 562 (1972)
.+..+ .+. +
T Consensus 90 ---------~~~~i---~~~-g---------------------------------------------------------- 98 (644)
T 2z6h_A 90 ---------GLLAI---FKS-G---------------------------------------------------------- 98 (644)
T ss_dssp ---------HHHHH---HTT-T----------------------------------------------------------
T ss_pred ---------hHHHH---HHc-C----------------------------------------------------------
Confidence 01111 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccc------
Q 000167 563 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------ 636 (1972)
Q Consensus 563 g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------ 636 (1972)
.-+.++..|.+.+...|..|+..|..+........
T Consensus 99 ---------------------------------------~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~ 139 (644)
T 2z6h_A 99 ---------------------------------------GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 139 (644)
T ss_dssp ---------------------------------------HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred ---------------------------------------CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHC
Confidence 01245566777778888888888887776532211
Q ss_pred hhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchh-hHHHHHHHHHhhhcch---hhhHHHHHHHHHHHhh
Q 000167 637 QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK-CVVLCLLGISERVADI---KTRAHAMKCLTTFSEA 712 (1972)
Q Consensus 637 ~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~-~~~~il~~LveKlgd~---K~r~~a~~~L~~l~e~ 712 (1972)
...+.++.+| ++.|.++...++.+|..++......... .-...++.|+.-+.+. +.+..+..+|..++..
T Consensus 140 g~i~~Lv~lL------~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 140 GGLQKMVALL------NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp THHHHHHHGG------GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHH------CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 1233444444 3446678887778887776421110000 0012355555555442 4556666677666532
Q ss_pred cCh------hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 000167 713 VGP------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1972)
Q Consensus 713 ~~~------~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~L 786 (1972)
... .-++..+++.+ .+.++.++..++..|..+.... ........+++.+..+ +.+.++.||..|..+|..|
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~i~~Lv~l-L~~~d~~v~~~a~~aL~~L 290 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAA-TKQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNL 290 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGC-TTCCSCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcc-hhhhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHH
Confidence 111 11345555554 5668999999999888886543 2223356788888888 9999999999999999888
Q ss_pred HHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCC--
Q 000167 787 HKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-- 864 (1972)
Q Consensus 787 y~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d-- 864 (1972)
... ++..+..+ . +. + ..+.|+..+.+
T Consensus 291 ~~~-~~~~~~~v-----------~----~~-g-----------------------------------~v~~Lv~lL~~~~ 318 (644)
T 2z6h_A 291 TCN-NYKNKMMV-----------C----QV-G-----------------------------------GIEALVRTVLRAG 318 (644)
T ss_dssp HTT-CHHHHHHH-----------H----HT-T-----------------------------------HHHHHHHHHHHHT
T ss_pred HcC-CHHHHHHH-----------H----Hc-C-----------------------------------CHHHHHHHHHccC
Confidence 542 11111111 0 00 0 01223333332
Q ss_pred CCHHHHHHHHHHHHHHHHHcc--ccCCCCC-hhhHHHHHHhccccch-HHHHHHHHHHHHHHHHHcChhhHh-h-hhhHH
Q 000167 865 PDWKVRLESIEAVNKILEEAN--KRIQPAG-TGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEK-S-SKGVL 938 (1972)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~--~~I~~~~-~~eL~~~L~~~L~DsN-~~V~~~Al~~l~~La~alg~~~~~-~-~~~ll 938 (1972)
..+.+|..|+..|..+..... ...+... -...+..|...|.+.+ ..++..|+.+++.|+.. ....+ . -..++
T Consensus 319 ~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i 396 (644)
T 2z6h_A 319 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAI 396 (644)
T ss_dssp TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHH
T ss_pred CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCH
Confidence 237888888888887753100 0000000 0235677888887664 68999999999988742 22112 1 13477
Q ss_pred HHHHHHhCCC----------------------cHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHH
Q 000167 939 SDILKCLGDN----------------------KKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGR 990 (1972)
Q Consensus 939 p~ll~~L~D~----------------------k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R 990 (1972)
|.++..|.+. ...|+.++..+|..++.... -...++.+...|.+. ++.++
T Consensus 397 ~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~ 474 (644)
T 2z6h_A 397 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQ 474 (644)
T ss_dssp HHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCS--CHHHH
T ss_pred HHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCC--CHHHH
Confidence 7777777653 34567777777775543211 123577788888865 57788
Q ss_pred HHHHHHHHHHhccCCCCCC-h--hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 991 KDLFDWLSKQLTGLSGFPD-A--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~-~--~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
..++..|...... +.... + ...+.++..++.|.+++||.+|..+|..+...-+
T Consensus 475 ~~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 475 RVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 8887776654421 11000 0 1234568888999999999999999988766554
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00031 Score=98.04 Aligned_cols=334 Identities=12% Similarity=0.102 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc--------chhhhHHHHHHHHHHHhhc-----C---------h
Q 000167 658 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA--------DIKTRAHAMKCLTTFSEAV-----G---------P 715 (1972)
Q Consensus 658 qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg--------d~K~r~~a~~~L~~l~e~~-----~---------~ 715 (1972)
.+...+.+++..++... .+..+..+++.+-..+. |-+.|+.|.-++.++++.. + .
T Consensus 376 s~R~aa~~~L~~l~~~~---~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKN---EVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred CcHHHHHHHHHHHHHHc---chhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 34556667777777653 23445555555544443 2367899998999998642 1 1
Q ss_pred -hHHHHHHHHhhhhCC---ChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhC
Q 000167 716 -GFIFERLYKIMKDHK---NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1972)
Q Consensus 716 -~~vl~~l~~~l~~~K---npKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G 791 (1972)
.++...+++.+ .+. +|.+|..++..+.+..+.+.. -....+++.+... +.++++.||.+|..++..+.....
T Consensus 453 ~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~~~--~~l~~~l~~l~~~-L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 453 VDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQLTK--AQLIELMPILATF-LQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGSCH--HHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhCCH--HHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhccc
Confidence 12334456655 344 899999999999887765421 1245677777675 899999999999999988765322
Q ss_pred -----------hhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHH
Q 000167 792 -----------PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (1972)
Q Consensus 792 -----------~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~ 860 (1972)
..+.+|+.. +++.|-.-+++... .+ ..
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~----ll~~L~~ll~~~~~-~~----------------------------------~~--- 566 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEI----LLKNLIALILKHGS-SP----------------------------------EK--- 566 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHH----HHHHHHHHHHTTCC-CH----------------------------------HH---
T ss_pred ccccccccccHHHhhhhHHH----HHHHHHHHHHhccC-CC----------------------------------Cc---
Confidence 223444433 33333333333210 00 00
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc-----ccchHHHHHHHHHHHHHHHHHcCh-hhHhhh
Q 000167 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMATLITLGAVASAMGP-AVEKSS 934 (1972)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L-----~DsN~~V~~~Al~~l~~La~alg~-~~~~~~ 934 (1972)
-.+...+++.+..++......+.|. +..++..|...+ +..|+.+....+++++.++.+.++ .+.++.
T Consensus 567 ------~~~~e~l~~al~~vv~~~~~~~~p~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 639 (960)
T 1wa5_C 567 ------LAENEFLMRSIFRVLQTSEDSIQPL-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV 639 (960)
T ss_dssp ------HTSCHHHHHHHHHHHHHHTTTTGGG-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred ------ccccHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 0001245556766666544556663 466666666554 234777777889999999998665 477888
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-C----chhhHHHHH--HHHhcCCCChhHHHHHHHHHHHHhccCCC-
Q 000167 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-H----LDKMVPYVT--TALTDAKLGAEGRKDLFDWLSKQLTGLSG- 1006 (1972)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~-~----l~~ll~~l~--~~L~~~~~~~~~R~~~l~~L~~~l~~~~~- 1006 (1972)
..++|.+...|..........+...+..++... + +..++|.+. ..++... .-..++..|..++...+.
T Consensus 640 ~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~ 715 (960)
T 1wa5_C 640 DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG----NIPAVTRLLKSFIKTDSSI 715 (960)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT----THHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCC----CchhHHHHHHHHHHhChHH
Confidence 899999998887666667888888888887764 2 234555444 3333221 112344444443322111
Q ss_pred CCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000167 1007 FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1972)
Q Consensus 1007 ~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~ 1053 (1972)
...+..++.-+..++.++.. +..|..++..+...+|...+.+++.
T Consensus 716 ~~~~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~ 760 (960)
T 1wa5_C 716 FPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIK 760 (960)
T ss_dssp CSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHH
Confidence 00012223334456667664 3788999999999999876777763
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-05 Score=104.89 Aligned_cols=375 Identities=11% Similarity=0.116 Sum_probs=232.7
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhcc--ccch-----hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ--NLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~--~~~~-----~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (1972)
+++++.+.|.+-..++.|+..+.+++.... +.+. ....|+++|. .+.|..++..+..+|..++.....
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~-----~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHcCCHH
Confidence 678999999999999999999998875422 1111 1344555553 345678888888888888753211
Q ss_pred CchhhH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcC--hhH-----HHHHHHHhhhhCC----ChHHHHHHHHHH
Q 000167 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGF-----IFERLYKIMKDHK----NPKVLSEGILWM 742 (1972)
Q Consensus 677 ~~~~~~-~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~--~~~-----vl~~l~~~l~~~K----npKv~~e~l~~L 742 (1972)
.....+ .-++|.|+.-+.+ ..++..|..+|..++.... -+. ++..++..+.... ...+...++..+
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 111111 1367888876665 4688889889988875321 111 1334444432211 222333444444
Q ss_pred HHHHHHhCCC-C-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCC
Q 000167 743 VSAVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1972)
Q Consensus 743 ~~~i~~fG~~-~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~ 820 (1972)
+.+...-... . ..+..+++.+..+ +.+.++.|+..|..++..+..... .....+. .
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~~~~------------~~~~~v~----~----- 291 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPN------------ERIEMVV----K----- 291 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCH------------HHHHHHH----T-----
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhhhhh------------hhHHHHH----h-----
Confidence 4443311111 1 1235678888888 999999999999888776643211 0000000 0
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC-hhhHHHH
Q 000167 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 899 (1972)
Q Consensus 821 ~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~-~~eL~~~ 899 (1972)
..+.+.|+..+.+.++.++..++..|..++... ....... -...+..
T Consensus 292 -------------------------------~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 292 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 339 (529)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------ccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHH
Confidence 002345777788899999999999999887421 1000000 0234566
Q ss_pred HHhccccchHHHHHHHHHHHHHHHHHcChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------
Q 000167 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 970 (1972)
Q Consensus 900 L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~-------- 970 (1972)
|...|.+.+..++..|+.+|+.|+..-....... -..++|.++..+.+....++..|..+|..++.....+
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 7777888899999999999999875322222222 2358999999999999999999999999888765422
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccC---CCCCChhhh------HHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL---SGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 971 ~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~---~~~~~~~~l------l~pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
.+++.|...|..+ ++.++..++..|...+... +....+... +.-|-....+.|.+|++.|...+..+
T Consensus 420 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 420 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2577788888865 6888888887776655322 211111111 12233345788999999998877665
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.49 E-value=7.7e-06 Score=105.87 Aligned_cols=375 Identities=11% Similarity=0.104 Sum_probs=232.0
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhcc--ccch-----hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ--NLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~--~~~~-----~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (1972)
+++++.|.|.+-..++.|+..+.+++.... +.+. ....|+++|. .+.|..++..+.-+|..++...+.
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~-----~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCHH
Confidence 788999999999999999999998875522 1111 1234455542 245677888888888888753211
Q ss_pred CchhhHH-HHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh--hH-----HHHHHHHhhhhC----CChHHHHHHHHHH
Q 000167 677 FPKKCVV-LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDH----KNPKVLSEGILWM 742 (1972)
Q Consensus 677 ~~~~~~~-~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~--~~-----vl~~l~~~l~~~----KnpKv~~e~l~~L 742 (1972)
.....+. -.+|.|+.-+.+ ..++..|..+|..++..... +. .+..++..+... ....+...++..+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 1111111 267888887765 46899999999888753211 11 133344443211 1223344455555
Q ss_pred HHHHHHhCCC-C-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCC
Q 000167 743 VSAVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1972)
Q Consensus 743 ~~~i~~fG~~-~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~ 820 (1972)
+.+...-... . ..+..+++.+..+ +.+.++.|+..|..++..|.... +...+.+ ..
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~A~~aL~~L~~~~------------~~~~~~i----~~----- 272 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGP------------NERIEMV----VK----- 272 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSC------------HHHHHHH----HT-----
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHHhhch------------hhhHHHH----Hh-----
Confidence 5544321111 1 1235678888888 99999999999988887664211 1100100 00
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC-hhhHHHH
Q 000167 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 899 (1972)
Q Consensus 821 ~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~-~~eL~~~ 899 (1972)
..+.+.++..+.+.++.++..++..+..++... ....... -...+..
T Consensus 273 -------------------------------~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~ 320 (510)
T 3ul1_B 273 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 320 (510)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------cccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchHH
Confidence 002346777788899999999999998886421 0000000 0224455
Q ss_pred HHhccccchHHHHHHHHHHHHHHHHHcChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------h
Q 000167 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------D 970 (1972)
Q Consensus 900 L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l--------~ 970 (1972)
|...|.+.+..++..|+.+|+.|+..-....... -..++|.++..+.+....||..|..+|..+...... .
T Consensus 321 L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~ 400 (510)
T 3ul1_B 321 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 400 (510)
T ss_dssp CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHC
Confidence 6677788899999999999999874322222222 235889999999999999999999999988876542 2
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccC---CCCCChhhh------HHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL---SGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 971 ~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~---~~~~~~~~l------l~pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
.+++.|...|.++ ++.++..++..|...+... +....+..+ +.-|-....+.|.+|++.|...+..+
T Consensus 401 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 401 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3567788888865 6888888887776655422 211111111 11233344778899999888777655
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00014 Score=94.07 Aligned_cols=368 Identities=13% Similarity=0.047 Sum_probs=207.7
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHHhccccc------hhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCc
Q 000167 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFP 678 (1972)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~ 678 (1972)
.++..|.+.+...|..|+..|..+........ ...+.++.++ .+.+.++...+..++..++.......
T Consensus 105 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll------~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL------NKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG------GCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHH------hcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 34455666666777778877777665422210 1123344433 45567777777777776654211000
Q ss_pred hhhH-HHHHHHHHhhhcc---hhhhHHHHHHHHHHHhhcCh------hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHH
Q 000167 679 KKCV-VLCLLGISERVAD---IKTRAHAMKCLTTFSEAVGP------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (1972)
Q Consensus 679 ~~~~-~~il~~LveKlgd---~K~r~~a~~~L~~l~e~~~~------~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~ 748 (1972)
.... ...++.++.-+.+ ...+..+..+|..++..-.. .-+++.++..+ .+.++.++..++..|..+...
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhcC
Confidence 0000 1234455544433 23455566666666532111 12345555554 566899999999888888764
Q ss_pred hCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000167 749 FGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (1972)
Q Consensus 749 fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~ 828 (1972)
... ......+++.+..+ +.+.++.||..|..+++.|... ++.....+ . +..
T Consensus 258 ~~~-~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~-----------~----~~~----------- 308 (529)
T 1jdh_A 258 ATK-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCN-NYKNKMMV-----------C----QVG----------- 308 (529)
T ss_dssp CTT-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTT-CHHHHHHH-----------H----HTT-----------
T ss_pred Chh-hHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH-----------H----HcC-----------
Confidence 322 22346788888888 9999999999999998888432 11111111 0 000
Q ss_pred ccccccCCCCCCCCCCCCcccccccccHHHHHhcC--CCCHHHHHHHHHHHHHHHHHccccC---CCCC-hhhHHHHHHh
Q 000167 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE--SPDWKVRLESIEAVNKILEEANKRI---QPAG-TGELFGGLRG 902 (1972)
Q Consensus 829 r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~--d~~Wk~R~eale~l~~ll~~a~~~I---~~~~-~~eL~~~L~~ 902 (1972)
..+.++..+. +.+|..|..|+..|..+.... ... .... -...++.|..
T Consensus 309 -------------------------~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~i~~~~~i~~L~~ 362 (529)
T 1jdh_A 309 -------------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRH-QEAEMAQNAVRLHYGLPVVVK 362 (529)
T ss_dssp -------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS-TTHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHcCChhHHHH
Confidence 0122333332 235888888888888775310 000 0000 0134677888
Q ss_pred ccccch-HHHHHHHHHHHHHHHHHcChhhHh-hh-hhHHHHHHHHhCCCcHHHHHHHH----------------------
Q 000167 903 RLYDSN-KNLVMATLITLGAVASAMGPAVEK-SS-KGVLSDILKCLGDNKKHMRECTL---------------------- 957 (1972)
Q Consensus 903 ~L~DsN-~~V~~~Al~~l~~La~alg~~~~~-~~-~~llp~ll~~L~D~k~~Vr~Aa~---------------------- 957 (1972)
.|.+.+ ..++..++.+++.++. +..... +. ..++|.++..+.+....+|..|.
T Consensus 363 lL~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~ 440 (529)
T 1jdh_A 363 LLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 440 (529)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHH
T ss_pred HhccccchHHHHHHHHHHHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHH
Confidence 887766 5899999999998874 332222 22 25789999988876666665433
Q ss_pred HHHHHHHHhc------CchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC-Ch--hhhHHHHHhhcCCCCHHH
Q 000167 958 TVLDAWLAAV------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DA--AHLLKPASIAMTDKSSDV 1028 (1972)
Q Consensus 958 ~aL~~i~~~~------~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~-~~--~~ll~pl~~~L~D~~~dV 1028 (1972)
.++..+.... .-...++.+...+.++ ++.++..+...|..... .+... .+ ...+.++...+.|.+.+|
T Consensus 441 ~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~--~~~v~~~a~~~l~~l~~-~~~~~~~i~~~~~~~~L~~l~~~~~~~v 517 (529)
T 1jdh_A 441 GALHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGV 517 (529)
T ss_dssp HHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSSHHH
T ss_pred HHHHHHhcCchHHHHHhccCCccHHHHHHcCC--chHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHhcCCCHHH
Confidence 3333322110 0123457777888766 57788777766655332 11100 00 123456888899999999
Q ss_pred HHHHHHHHHHH
Q 000167 1029 RKAAEACIVEI 1039 (1972)
Q Consensus 1029 R~aA~~~l~~l 1039 (1972)
|+.|..+|..+
T Consensus 518 ~~~a~~aL~~l 528 (529)
T 1jdh_A 518 ATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999888654
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-05 Score=102.93 Aligned_cols=380 Identities=12% Similarity=0.123 Sum_probs=237.9
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCCCCCCC-Ch--HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhh
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DF--TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~-~y--~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (1972)
++..+.+.+.+-..+.+|+..++++++..+-.+- .. ..+++.|...++ +.+..+...|+.+|..||.+-...-...
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4677888999999999999999998853322220 00 136778888887 6678899999999999997543222222
Q ss_pred hh-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHhhcCC-----hHHHHHHHHHHHHHH
Q 000167 364 SR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKV-----PLVRSLTLNWVTFCI 431 (1972)
Q Consensus 364 ~~-~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~------~il~~l~~~l~~Kn-----p~vR~~~l~~L~~~l 431 (1972)
+. ..+|.|+..+++....|++.+..||..+... +.... ..++.+...+...+ ..+...++..+..+.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d-~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 22 4799999999999999999999999988754 11111 23566666666433 233444444444433
Q ss_pred HhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000167 432 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511 (1972)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~ 511 (1972)
.......-......++|.|.+++.+.+++|+..|..++..+... .. .....+ ... |
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~~-----------~~~~~i---~~~-g------- 274 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PN-----------ERIEMV---VKK-G------- 274 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CH-----------HHHHHH---HTT-T-------
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--hh-----------hhHHHH---Hhc-c-------
Confidence 32211111123467899999999999999999988887655421 11 001111 000 0
Q ss_pred CCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 000167 512 SSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL 591 (1972)
Q Consensus 512 ~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ 591 (1972)
T Consensus 275 -------------------------------------------------------------------------------- 274 (510)
T 3ul1_B 275 -------------------------------------------------------------------------------- 274 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHH--HHhc-CCCCccchHHHHHHHHHHHH
Q 000167 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR--LVCM-LPGWSEKNVQVQQQVIEVIN 668 (1972)
Q Consensus 592 ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~--~L~~-~p~~~DsN~qV~~~~Le~l~ 668 (1972)
+.+.++..|.+.++..+..++..|..++...+. ....++. .+.. ...+.+.+..|...++-+|.
T Consensus 275 ----------~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~---~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 275 ----------VVPQLVKLLGATELPIVTPALRAIGNIVTGTDE---QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp ----------CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH---HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred ----------cchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH---HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 013456677888888888888888877544221 1222222 1100 01345677788888888887
Q ss_pred HHHHHcCCCchhhH-HHHHHHHHhhhc--chhhhHHHHHHHHHHHhhcChhH--------HHHHHHHhhhhCCChHHHHH
Q 000167 669 YLAATATKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKVLSE 737 (1972)
Q Consensus 669 ~l~~~~~~~~~~~~-~~il~~LveKlg--d~K~r~~a~~~L~~l~e~~~~~~--------vl~~l~~~l~~~KnpKv~~e 737 (1972)
.++........... ..++|.|+.-+. +.+++..|.-+|..++....++. ++..|+..+ ..++++++..
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d~~i~~~ 420 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQV 420 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCCHHHHHH
Confidence 76542111000011 136677777664 45788888888888887655443 244555554 7889999999
Q ss_pred HHHHHHHHHHHhCCCC-C-Chh------hHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000167 738 GILWMVSAVEDFGVSH-L-KLK------DLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1972)
Q Consensus 738 ~l~~L~~~i~~fG~~~-l-~~k------~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (1972)
++..|..++....... . ... ..++.+..+ ..|.|..|++.|..++...|
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 9999998886322111 0 111 124455666 78899999999999876554
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.43 E-value=3.6e-05 Score=100.10 Aligned_cols=377 Identities=13% Similarity=0.132 Sum_probs=234.6
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhh
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~---y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (1972)
+++...+.+.+-..+.+|+..++++++..+-.+-+ -..+++.|...+. +.+..+...|+.+|..||.+-...-...
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 36778889999999999999999987533222210 1246778888887 6778899999999999997543222222
Q ss_pred -hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHhhcCC-----hHHHHHHHHHHHHHH
Q 000167 364 -SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKV-----PLVRSLTLNWVTFCI 431 (1972)
Q Consensus 364 -~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~------~il~~l~~~l~~Kn-----p~vR~~~l~~L~~~l 431 (1972)
-...+|.|+..+......|++.+..||..+... +.... ..++.+...+...+ ..+...++..+..+.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 224789999999999999999999999988753 11111 23566666665433 233444444444433
Q ss_pred HhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000167 432 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511 (1972)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~ 511 (1972)
.......-......++|.|.+++.+.+++|+..|..+|..+... .. .....+ +.. |
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~~-----------~~~~~v---~~~-g------- 293 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PN-----------ERIEMV---VKK-G------- 293 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CH-----------HHHHHH---HTT-T-------
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--hh-----------hhHHHH---Hhc-c-------
Confidence 32221111123467899999999999999999888777655421 11 000111 000 0
Q ss_pred CCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 000167 512 SSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL 591 (1972)
Q Consensus 512 ~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ 591 (1972)
T Consensus 294 -------------------------------------------------------------------------------- 293 (529)
T 3tpo_A 294 -------------------------------------------------------------------------------- 293 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccc------hhHHHHHHHHhcCCCCccchHHHHHHHHH
Q 000167 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIE 665 (1972)
Q Consensus 592 ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~lv~~L~~~p~~~DsN~qV~~~~Le 665 (1972)
+.+-++..|.+.++..+..++..|..++.+.+... .....++.+| .+.+..|...++-
T Consensus 294 ----------~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL------~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 294 ----------VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL------TNPKTNIQKEATW 357 (529)
T ss_dssp ----------CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT------TCSSHHHHHHHHH
T ss_pred ----------chHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH------cCCCHHHHHHHHH
Confidence 01345567777888888888888877654321110 0112333333 4556678888888
Q ss_pred HHHHHHHHcCCCchhhH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcChhH--------HHHHHHHhhhhCCChHH
Q 000167 666 VINYLAATATKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKV 734 (1972)
Q Consensus 666 ~l~~l~~~~~~~~~~~~-~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~~~--------vl~~l~~~l~~~KnpKv 734 (1972)
+|..++........... ..++|.|+.-+.+ .+++..|.-+|..++....++. ++..|+..+ ..+++++
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL-~~~d~~i 436 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKI 436 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCSCHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh-cCCCHHH
Confidence 88777642111110011 1366777776654 5688888888888877655543 244555554 6889999
Q ss_pred HHHHHHHHHHHHHHhCCCC-C-ChhhH------HHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000167 735 LSEGILWMVSAVEDFGVSH-L-KLKDL------IDFCKDTGLQSSAAATRNATIKLLGALH 787 (1972)
Q Consensus 735 ~~e~l~~L~~~i~~fG~~~-l-~~k~l------i~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (1972)
+..++..|..++....... . .+..+ ++.+..+ ..|.|..|++.|..++-..|
T Consensus 437 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 437 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 9999999988876321110 0 11112 3445666 78999999999988875544
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.40 E-value=0.0049 Score=86.79 Aligned_cols=694 Identities=10% Similarity=0.077 Sum_probs=334.8
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccCh--h-HHHHhhh
Q 000167 98 IAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--K-RILKMLP 174 (1972)
Q Consensus 98 LveK~l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~--k-~il~~l~ 174 (1972)
++...+++....|..|.+.|..+-+....-..+..++. .+.++.++..|...|.+.+...-. .++. + .|-..+.
T Consensus 21 ~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~--~s~~~~vr~~aa~~Lk~~i~~~W~-~l~~~~~~~ir~~ll 97 (1049)
T 3m1i_C 21 VVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQ--FSTNPQSKFIALSILDKLITRKWK-LLPNDHRIGIRNFVV 97 (1049)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHH--HCSCHHHHHHHHHHHHHHHHHTGG-GSCHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHhhCc-cCCHHHHHHHHHHHH
Confidence 33444555556788888888777543222122333332 256899999999999998875332 2442 1 1333344
Q ss_pred hhhcC----C-----ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhh
Q 000167 175 ELFDH----Q-----DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKEL 245 (1972)
Q Consensus 175 ~ll~~----~-----d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~ 245 (1972)
.++.+ . ++.||.....++.+|.++..++.- +.+ +.+|-..+. .+ +. .. +.
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-p~l--------l~~L~~~~~---~~--~~-----~~--~~ 156 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-PEF--------IPELIGSSS---SS--VN-----VC--EN 156 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-TTH--------HHHHHHHHT---TC--HH-----HH--HH
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-hHH--------HHHHHHHHc---cC--hH-----HH--HH
Confidence 43332 1 578999999999999888654211 111 122212111 00 00 00 00
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCCh--HHHHHHHH-HHHHHhcCCCCCCCC
Q 000167 246 GQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKW--SERKDAVA-ELTKLASTKRIAPGD 322 (1972)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kW--keR~eaL~-~L~~l~~~~ki~~~~ 322 (1972)
...++..++ +++.+ . +..| ..|..-++ .++. .
T Consensus 157 --------------------------------~l~~L~~l~-eev~~-~-~~~~~~~~r~~~lk~~l~~----------~ 191 (1049)
T 3m1i_C 157 --------------------------------NMIVLKLLS-EEVFD-F-SAEQMTQAKALHLKNSMSK----------E 191 (1049)
T ss_dssp --------------------------------HHHHHHHHH-HHHHT-S-CTTTSCHHHHHHHHHHHHH----------H
T ss_pred --------------------------------HHHHHHHHH-HHHHH-h-cchhhhhHHHHHHHHHHHH----------H
Confidence 000111111 11100 0 0000 11222221 1111 1
Q ss_pred hHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-
Q 000167 323 FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN- 400 (1972)
Q Consensus 323 y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~- 400 (1972)
+..++..+...+. ..+..++..+++|+..+..-....+ -.-..+++.+++.+- ..+.++.++.+|+..++......
T Consensus 192 ~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~ 269 (1049)
T 3m1i_C 192 FEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY-IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQD 269 (1049)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcc
Confidence 4456666667776 4466788888888877654222111 011235666664443 26788999999999998752111
Q ss_pred -------hHhHHHHHHHHhhc------------------CChHHHHHHHHHHHHHHHhcCh-----hHHHHhhhhHHHHH
Q 000167 401 -------LVDVVEDVKTSVKN------------------KVPLVRSLTLNWVTFCIETSSK-----AAVLKVHKDYVPIC 450 (1972)
Q Consensus 401 -------l~~il~~l~~~l~~------------------Knp~vR~~~l~~L~~~l~~~~~-----~~l~~~l~~l~p~l 450 (1972)
+..+++.++..++. .........+.++..+++.+.. ..+...+..+++.+
T Consensus 270 ~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 349 (1049)
T 3m1i_C 270 NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence 11222333332211 1233334455555544433211 11234567788889
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHh----C-chhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCC
Q 000167 451 MECLNDGTPEVRDAAFSVLAAIAKSV----G-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 525 (1972)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~l~~~~----g-e~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~ 525 (1972)
..+....+.+|+..+.+-...+...+ . ...+.+++..| +.-++.+..-
T Consensus 350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~L-------v~~ll~~m~~-------------------- 402 (1049)
T 3m1i_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQL-------RLVIIENMVR-------------------- 402 (1049)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHH-------HHHHHHTCCC--------------------
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH-------HHHHHHhcCC--------------------
Confidence 99888889999999988777776632 1 12233343333 2223332100
Q ss_pred CCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH---------HHH
Q 000167 526 VEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE---------IES 596 (1972)
Q Consensus 526 ~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee---------~e~ 596 (1972)
|+... -. . .++.+++.+..-..|+ +-.
T Consensus 403 ~ed~~--~~-~-----------------------------------------dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 403 PEEVL--VV-E-----------------------------------------NDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp CTTCC--EE-E-----------------------------------------CTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred Cccee--ee-e-----------------------------------------CCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 00000 00 0 0000001011111111 111
Q ss_pred HhhccCcHH--------HHHhhh--cCChHHHHHHHHHHHHHHHhcccc-c-hhHHHHHHHHhcCCCC---ccchHHHHH
Q 000167 597 RLGSLIPAD--------TVGQLK--SAVWKERLEAISSLRQQVEAVQNL-D-QSVEILVRLVCMLPGW---SEKNVQVQQ 661 (1972)
Q Consensus 597 ~~~~ll~~~--------l~~~L~--s~~Wk~Rl~a~e~L~~~v~~~~~~-~-~~~~~lv~~L~~~p~~---~DsN~qV~~ 661 (1972)
.+..+.+.+ +...+. +.+|+.|.+++-.++.+....... . .....++..|...|.+ +|.++.|..
T Consensus 439 ~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~ 518 (1049)
T 3m1i_C 439 YLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVAS 518 (1049)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHH
Confidence 122223322 222333 478999999999999765443221 1 1133444444322333 245666665
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcChhHH----------HHHHHHhh---
Q 000167 662 QVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFI----------FERLYKIM--- 726 (1972)
Q Consensus 662 ~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~~~v----------l~~l~~~l--- 726 (1972)
..+.++..+.+-... ....+..+++.+++.+.| .+++..|..+|..+++.++...+ ++.++..+
T Consensus 519 ~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~ 597 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKT 597 (1049)
T ss_dssp HHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 677777665542211 234677888888888887 57899999999999998765433 55555543
Q ss_pred hhCCChHHHHHHHHHHHHHHHHhCC-CCC-C-hh----hHHHHHHhcCCC----C----Cchh-HHH--HHHHHHHHHHH
Q 000167 727 KDHKNPKVLSEGILWMVSAVEDFGV-SHL-K-LK----DLIDFCKDTGLQ----S----SAAA-TRN--ATIKLLGALHK 788 (1972)
Q Consensus 727 ~~~KnpKv~~e~l~~L~~~i~~fG~-~~l-~-~k----~li~~l~~~gL~----~----sn~~-VR~--aA~~ll~~Ly~ 788 (1972)
...-.++......+.+..++...|. ... + +. .++..+... +. + .+++ ++. ...+++..+..
T Consensus 598 ~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~ 676 (1049)
T 3m1i_C 598 TADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI-VEQSTANPTLLLDSETVKIIANIIKTNVAVCT 676 (1049)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHH-HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhchhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 2233445555666777777765541 000 0 11 122111111 11 0 0222 222 22345566667
Q ss_pred hhChhHHhhhhcccHHHHHHHHHH---HhcC-CCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCC
Q 000167 789 FVGPDIKGFLADVKPALLSALDAE---YEKN-PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES 864 (1972)
Q Consensus 789 ~~G~~l~~~L~~lkp~ll~~Le~e---fek~-~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d 864 (1972)
.+|..+.+++..+-+..+..+..- ++.. ...+++. . ..|.+.....+.+.+++.+.
T Consensus 677 ~l~~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~-~------------------~~p~~~~~~~~~~~l~~ll~- 736 (1049)
T 3m1i_C 677 SMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIA-T------------------KTPKVRGLRTIKKEILKLVE- 736 (1049)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG-G------------------GSHHHHHHHHHHHHHHHHHH-
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchh-h------------------hhHHHHHHHHHHHHHHHHHH-
Confidence 778877776654433333222211 1100 0000000 0 00000000111111111100
Q ss_pred CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc--chHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHH
Q 000167 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (1972)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll 942 (1972)
.|..+...++. ++ .+- ..+++..+...+.. +.... ..++.+++.++..+|..+.+|+..++..++
T Consensus 737 -~~~~~~~~l~~---~~-------~~~-~~~~l~~ll~~~~~~~~~~~~-~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~ 803 (1049)
T 3m1i_C 737 -TYISKARNLDD---VV-------KVL-VEPLLNAVLEDYMNNVPDARD-AEVLNCMTTVVEKVGHMIPQGVILILQSVF 803 (1049)
T ss_dssp -HHHHHCSCHHH---HH-------HHT-HHHHHHHHHHHHHHSCGGGCC-THHHHHHHHHHHHHGGGCHHHHHHHHHHHH
T ss_pred -HHHHhCCCHHH---HH-------HHH-HHHHHHHHHHHHHhCCccccc-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 01111111110 00 000 12333333222211 11111 457899999999999889999998888888
Q ss_pred HHh-----C--CCcHHHHHHHHHHHHHHHHhcC
Q 000167 943 KCL-----G--DNKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 943 ~~L-----~--D~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+. + +..+.+|......+..++.++.
T Consensus 804 ~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~ 836 (1049)
T 3m1i_C 804 ECTLDMINKDFTEYPEHRVEFYKLLKVINEKSF 836 (1049)
T ss_dssp HHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCH
Confidence 774 3 4678899999999999998875
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00024 Score=93.89 Aligned_cols=158 Identities=11% Similarity=0.093 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhccCCC--CchhHHhhhhhhHhhhc-CC--cHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcC
Q 000167 30 EANIDLAALCDSITDP--KDNRIRELGPLFKKTVA-DS--NAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT 104 (1972)
Q Consensus 30 ~ayeel~~~~~~~~d~--~~~~~~~~~~~~~k~v~-Ds--N~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~ 104 (1972)
-++.++++.+++.... ......+-..-+++-+. |+ +......++.-+..+.- .|.+....+.++ + |++.
T Consensus 11 ~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~-~G~d~s~~~~~v----v-kl~~ 84 (621)
T 2vgl_A 11 RGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFL-LGHDIDFGHMEA----V-NLLS 84 (621)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHH-HSCCCCSCHHHH----H-HGGG
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCCCchhHHHH----H-HHhc
Confidence 3677888887764211 11112222344555555 43 55555666666554433 344333222233 3 3555
Q ss_pred -CChhHHHHHHHHHHHHHhhhhhh---hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhh--c
Q 000167 105 -GRPKTVEKAQAVFMLWVELEAVD---VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF--D 178 (1972)
Q Consensus 105 -~k~~~k~~a~~~ll~~~E~~~~~---~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll--~ 178 (1972)
.+...|..+--.+..|.+. +++ -++..+.+.+.+.||-++..++.+|..+ +... =...+++.+.+++ .
T Consensus 85 s~~~~~Krl~YL~l~~~~~~-~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i----~~~e-~~~~l~~~v~~~l~~~ 158 (621)
T 2vgl_A 85 SNRYTEKQIGYLFISVLVNS-NSELIRLINNAIKNDLASRNPTFMGLALHCIANV----GSRE-MAEAFAGEIPKILVAG 158 (621)
T ss_dssp CSCHHHHHHHHHHHHHSCCC-CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH----CCHH-HHHHHTTHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHHccC-CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc----CCHH-HHHHHHHHHHHHHhCC
Confidence 4677777665555555443 344 3456778899999999999999999765 3211 1356889999999 9
Q ss_pred CCChhHHHHHHHHHHHHHHhh
Q 000167 179 HQDQNVRASSKGLTLELCRWI 199 (1972)
Q Consensus 179 ~~d~~VR~~a~~l~~ely~~l 199 (1972)
|+++.||+.|..++..+|+..
T Consensus 159 d~~~~VRK~A~~al~kl~~~~ 179 (621)
T 2vgl_A 159 DTMDSVKQSAALCLLRLYRTS 179 (621)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999844
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.4e-06 Score=94.56 Aligned_cols=179 Identities=18% Similarity=0.163 Sum_probs=135.0
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
+.+...+.+.+|..|..|+..|..+.. .+.++.|...+.|.+..|+..|+.+++.+.. ...
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~ 82 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 82 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 356777889999999999999988743 2467778888999999999999999988742 356
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (1972)
++.|++.+++..+.||.++..+|..+- -...++.|...+++.++.+|..++..|..+- . +..+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-------~~~~ 145 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIG------DERAVEPLIKALKDEDWFVRIAAAFALGEIG----D-------ERAV 145 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C-------HHHH
Confidence 788999999999999998888776552 2457788889999999999999998887741 1 3467
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhc
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~ 502 (1972)
+.|..+++|.++.||.+|..+|+.+..--.-..+..++.+=++.-+....+.+..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8899999999999999999999876321111123333443355555555555544
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00061 Score=90.01 Aligned_cols=178 Identities=10% Similarity=0.073 Sum_probs=112.2
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh
Q 000167 856 PTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1972)
Q Consensus 856 ~~ll~~l~-d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (1972)
..++..+. |.+-.+|..+++.+..++++. ...+++..|...+.+.+..++..++..|+.+|....+.++.|+
T Consensus 371 ~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~-------Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v 443 (621)
T 2vgl_A 371 ETVINALKTERDVSVRQRAVDLLYAMCDRS-------NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYV 443 (621)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHH
T ss_pred HHHHHHhccCCCHhHHHHHHHHHHHHcChh-------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 35666677 888889999999999887643 2578888888888888888999999999999987766666665
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-c-hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc-CCCCCC--
Q 000167 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L-DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG-LSGFPD-- 1009 (1972)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-l-~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~-~~~~~~-- 1009 (1972)
..++ +.+.+....+.+.+...+..++...+ + ...+..+.+.+.+.... ..=..+..|+..-+.. ....+.
T Consensus 444 ~~Ll----~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~-~~li~~~~wilGEy~~~~~~~~~~~ 518 (621)
T 2vgl_A 444 DTIL----NLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACH-ENLVKVGGYILGEFGNLIAGDPRSS 518 (621)
T ss_dssp HHHH----HHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHHHHTHHHHSSTTSC
T ss_pred HHHH----HHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccch-HHHHHHHHHHhcchHHHhcccCCCC
Confidence 5444 33333333455555555665555443 2 22445566777754311 1111233465322211 111111
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000167 1010 AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 1010 ~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~ 1045 (1972)
..+.+..+...+.+.+..||..+-.++..+....++
T Consensus 519 p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~ 554 (621)
T 2vgl_A 519 PLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE 554 (621)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH
Confidence 123455577778888999999998888888776643
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.3e-06 Score=93.08 Aligned_cols=149 Identities=20% Similarity=0.192 Sum_probs=123.3
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
+.+.+.+.+.+|..|..|+..|..+.. ...+..|...+.|.+..|+..|+.+++.+.. ...
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~ 77 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 77 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 467888999999999999999987643 2356777788899999999999999987642 256
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (1972)
++.|++.+.+..+.||.++..+|..+- -...++.+...+++.++.+|..++..|..+- -+..+
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~ 140 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIG------DERAVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAV 140 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----------CGGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CHHHH
Confidence 889999999999999998888876552 2457888889999999999999998887641 14567
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
+.|..++.|.++.||.+|..+|+.+
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999876
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.6e-06 Score=92.12 Aligned_cols=182 Identities=20% Similarity=0.176 Sum_probs=136.4
Q ss_pred cHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh
Q 000167 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1972)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (1972)
.+.++..+.|.+|.+|..|+..+..+-. .+.+..|...|.|.+..|+..|+.+++.+..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------- 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 4578888999999999999999886521 4677888888999999999999998887631
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhH
Q 000167 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014 (1972)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll 1014 (1972)
...++.++..|.|..+.||.+|..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....+
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~~ 145 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DERAV 145 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-C-------CGGGH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHhCC--CHHHHHHHHHHHHHc-C-------CHHHH
Confidence 34678889999999999999999998766 4456788899999876 689999999988764 1 12355
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhcc
Q 000167 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (1972)
Q Consensus 1015 ~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~ 1071 (1972)
..+...+.|.++.||.+|..+|..+...-..+.+...+.+=++..+......|.+.+
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 668888999999999999999987732111123444444445555555556665543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-05 Score=90.79 Aligned_cols=177 Identities=21% Similarity=0.198 Sum_probs=134.4
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
..+.+++.+.+.+|.+|..|+..+..+-. .+.+..|...|.|.+..++..|+..++.+. .
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----~----- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D----- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-----
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C-----
Confidence 45678999999999999999999986521 356778888889999999999999888763 1
Q ss_pred hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhh
Q 000167 934 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013 (1972)
Q Consensus 934 ~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~l 1013 (1972)
...++.++..|.|..+.||.+|..+|..+ +-...++.+...|.++ ++.+|..++..|...- ....
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~--------~~~~ 139 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEIG--------DERA 139 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHT--------CGGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC--------CHHH
Confidence 24578889999999999999999998775 4456788889999876 6999999998887641 1345
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhH----HHHHhccCChHHHHHHHHHHhh
Q 000167 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQET----IEKNLKDIQGPALALILERIKL 1069 (1972)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~----~~~~l~~L~~~~~~~I~~~l~k 1069 (1972)
+..+...+.|.++.||..|..+|..+ |... +...+.+=++..+......+.+
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh----CchhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56688899999999999999999877 4332 3333333344444444455544
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.29 E-value=5.3e-05 Score=89.59 Aligned_cols=93 Identities=12% Similarity=0.032 Sum_probs=64.3
Q ss_pred HHHHHhhhcch--hhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 000167 686 LLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1972)
Q Consensus 686 l~~LveKlgd~--K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l 763 (1972)
++.|+..+.|. .+|..|..+|..+. ...+++.+...+ .+.++.+|..++..|.. +|...-.+..+++.+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~----l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEFC-SDKNYIRRDIGAFILGQ----IKICKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHHH-TCSSHHHHHHHHHHHHH----SCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----CchHHHHHHHHH-cCCCHHHHHHHHHHHHH----hccccccchHHHHHH
Confidence 46666666653 56777777776654 334667777765 68899999988877654 443222345566666
Q ss_pred H-hcCCCCCchhHHHHHHHHHHHHHH
Q 000167 764 K-DTGLQSSAAATRNATIKLLGALHK 788 (1972)
Q Consensus 764 ~-~~gL~~sn~~VR~aA~~ll~~Ly~ 788 (1972)
. .+ +.+.++.||..|...|+.+..
T Consensus 96 ~~~~-~~d~~~~vr~~a~~aL~~l~~ 120 (280)
T 1oyz_A 96 NNMA-LNDKSACVRATAIESTAQRCK 120 (280)
T ss_dssp HHHH-HHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-hcCCCHHHHHHHHHHHHHHhc
Confidence 5 34 788999999999999998864
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.29 E-value=0.063 Score=75.51 Aligned_cols=494 Identities=10% Similarity=0.050 Sum_probs=258.6
Q ss_pred CChHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcc----c-----CHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 000167 297 TKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITD----V-----NIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (1972)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~D----~-----N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (1972)
.+=..|.-|+..|+..+.. ..+.+.+...|-..|...+.+ . +..|+...+.++..|++..-+ ..++
T Consensus 61 ~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p---~~Wp 137 (1049)
T 3m1i_C 61 TNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---QNWP 137 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT---TTCT
T ss_pred CCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc---ccch
Confidence 3455677777777775531 233333344444444444431 1 467788888899888876432 4567
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCC-------------------ChHhHHHHHHHHhh-cCChHHHHHHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCL-------------------NLVDVVEDVKTSVK-NKVPLVRSLTL 424 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~-------------------~l~~il~~l~~~l~-~Knp~vR~~~l 424 (1972)
.+++.|+..++ .....++.+..+|..+..- ... .+..+++.+...++ +.++.++..++
T Consensus 138 ~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL 216 (1049)
T 3m1i_C 138 EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATL 216 (1049)
T ss_dssp THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 88999999886 5556677777777776642 000 12234444455554 45688999999
Q ss_pred HHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh-Cch--hHHHhHhhccHHHHHHHHH-HH
Q 000167 425 NWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV-GMR--PLERSIEKLDDVRRNKLSE-MI 500 (1972)
Q Consensus 425 ~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~-ge~--~~~~~l~~Ld~~~~kkI~e-~~ 500 (1972)
..+..++.-.+...+. -..+++.+...+. .++++|.+|.+||..++..- +.. .+...+..+-+.-...+.+ .+
T Consensus 217 ~~l~~~l~wi~~~~~~--~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~ 293 (1049)
T 3m1i_C 217 ESLLRYLHWIPYRYIY--ETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1049)
T ss_dssp HHHHHHTTTSCTHHHH--SSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhCCHHHHh--hhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhC
Confidence 9888877644433221 1456666663222 37999999999999988651 221 0111111111111111111 00
Q ss_pred hcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 501 AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEA 580 (1972)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~ 580 (1972)
.. .. . . .... . .
T Consensus 294 p~-------~~------------------~---l-~~~~---~-----------------------------------~- 305 (1049)
T 3m1i_C 294 PV-------TA------------------D---L-KATY---A-----------------------------------N- 305 (1049)
T ss_dssp CT-------TS------------------C---H-HHHH---H-----------------------------------H-
T ss_pred CC-------cc------------------c---H-HHHh---c-----------------------------------c-
Confidence 00 00 0 0 0000 0 0
Q ss_pred CCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHH
Q 000167 581 PEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660 (1972)
Q Consensus 581 ~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~ 660 (1972)
... ..++.-..+..++. . -++.....+...+........++.++..... ..+..|.
T Consensus 306 -----~~~-~d~~~~~~l~~~~~-----~-----------~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~--~~d~~v~ 361 (1049)
T 3m1i_C 306 -----ANG-NDQSFLQDLAMFLT-----T-----------YLARNRALLESDESLRELLLNAHQYLIQLSK--IEERELF 361 (1049)
T ss_dssp -----TCT-THHHHHHHHHHHHH-----H-----------HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHT--SSCHHHH
T ss_pred -----CCc-chHHHHHHHHHHHH-----H-----------HHHHHHHHHcCChhhHHHHHHHHHHHHHHHc--CCcHHHH
Confidence 000 01111111111110 0 0001111111110011112222332211001 1244577
Q ss_pred HHHHHHHHHHHHHc---C---CCchhhHHHHHHHHHhhhcc----------h--------------hhhHHHHHHHHHHH
Q 000167 661 QQVIEVINYLAATA---T---KFPKKCVVLCLLGISERVAD----------I--------------KTRAHAMKCLTTFS 710 (1972)
Q Consensus 661 ~~~Le~l~~l~~~~---~---~~~~~~~~~il~~LveKlgd----------~--------------K~r~~a~~~L~~l~ 710 (1972)
..++++|..+++.. + ..-+..+..+++.++.++.- . -.+..+.++|..++
T Consensus 362 ~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~ 441 (1049)
T 3m1i_C 362 KTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLT 441 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHH
Confidence 78888888887721 1 22345666777777777621 0 11346778888888
Q ss_pred hhcChhHHHHHHHHhhh---h--CCChHHHHHHHHHHHHHHHHhCCCCC-C-hhhHHHHHHhcCCC-----CCchhHHHH
Q 000167 711 EAVGPGFIFERLYKIMK---D--HKNPKVLSEGILWMVSAVEDFGVSHL-K-LKDLIDFCKDTGLQ-----SSAAATRNA 778 (1972)
Q Consensus 711 e~~~~~~vl~~l~~~l~---~--~KnpKv~~e~l~~L~~~i~~fG~~~l-~-~k~li~~l~~~gL~-----~sn~~VR~a 778 (1972)
... +..++..+++.+. . +.+|+.+.+++..+..+....+...- . +..+++.+..+ .. +..+.||..
T Consensus 442 ~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l-~~~~~~~~~~~~v~~~ 519 (1049)
T 3m1i_C 442 HLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL-TVKKRGKDNKAVVASD 519 (1049)
T ss_dssp HHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH-TTSSCSHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH-HhhhccccchHHHHHH
Confidence 544 4445555554431 1 46899999888888765432221100 1 23345554443 22 234556656
Q ss_pred HHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHH
Q 000167 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 858 (1972)
Q Consensus 779 A~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~l 858 (1972)
+..+++.+..|.... |..+ . .+.+.+
T Consensus 520 ~~~~lgry~~~~~~~---------~~~l---~------------------------------------------~vl~~l 545 (1049)
T 3m1i_C 520 IMYVVGQYPRFLKAH---------WNFL---R------------------------------------------TVILKL 545 (1049)
T ss_dssp HHHHHHHCHHHHHHC---------HHHH---H------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhH---------HHHH---H------------------------------------------HHHHHH
Confidence 777777665554321 1100 0 012345
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHccccCC--------CCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcCh--
Q 000167 859 VKSLESPDWKVRLESIEAVNKILEEANKRIQ--------PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP-- 928 (1972)
Q Consensus 859 l~~l~d~~Wk~R~eale~l~~ll~~a~~~I~--------~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~-- 928 (1972)
+..+.+.+-.+|..|...+..++..+...+. |. +.+++..|...+.+....-....+++++.++.+.+.
T Consensus 546 l~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~-~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~ 624 (1049)
T 3m1i_C 546 FEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF-IQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1049)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH-HHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHH
Confidence 5566677788899999999999987644432 22 467777666666553333345667888999988883
Q ss_pred hhHhhhhhHHHHHHHHhC
Q 000167 929 AVEKSSKGVLSDILKCLG 946 (1972)
Q Consensus 929 ~~~~~~~~llp~ll~~L~ 946 (1972)
...+|+..+++.++..+.
T Consensus 625 ~~~~~~~~l~~~~~~~~~ 642 (1049)
T 3m1i_C 625 ERNRLLSDLMQLPNMAWD 642 (1049)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 477899999988876654
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00016 Score=96.75 Aligned_cols=378 Identities=12% Similarity=0.094 Sum_probs=239.4
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchh-----hhhh
Q 000167 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADAD-----AGRY 90 (1972)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~-----~~~~ 90 (1972)
+..-+.|.+=..+..|++.+....... +.-+-......+++..++...|..++..++-+|..+-...+.+ +...
T Consensus 295 li~Ll~s~~~~~q~~A~~al~~aa~~~-~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 295 ILAMATTDDELQQRVACECLIAASSKK-DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTTSH-HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCc-HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhc
Confidence 456677888888999999888865320 0001111223577888899999999998877776654322111 1111
Q ss_pred -hHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhC
Q 000167 91 -AKEVCDAIAAKCLTG--RPKTVEKAQAVFMLWVELEA-------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG 160 (1972)
Q Consensus 91 -~~~v~~~LveK~l~~--k~~~k~~a~~~ll~~~E~~~-------~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG 160 (1972)
...+++.++.-..+. .+..+..|.+.|.-+..-.. -..++..|...+++.++.++.+++.+|.++...+-
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence 234555555443333 67889999998776653321 13566777778888999999999999999877331
Q ss_pred CC-ccC------------------------hh---------HHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhH
Q 000167 161 AK-IIP------------------------PK---------RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT 206 (1972)
Q Consensus 161 ~~-~~~------------------------~k---------~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~ 206 (1972)
.. .++ .+ ..++.|..++.+.++.||+.|..++..|. |....+.
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA---~d~~~r~ 530 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC---GLKELRG 530 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH---TSHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc---CCHHHHH
Confidence 11 000 01 14566666666666677666666655553 2210111
Q ss_pred HHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCc
Q 000167 207 ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLE 286 (1972)
Q Consensus 207 ~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~ 286 (1972)
.+. . .+ -++
T Consensus 531 ~Vv------------------------------------------~---~G--------------------------aip 539 (810)
T 3now_A 531 KVV------------------------------------------Q---EG--------------------------GVK 539 (810)
T ss_dssp HHH------------------------------------------H---TT--------------------------HHH
T ss_pred HHH------------------------------------------H---CC--------------------------CHH
Confidence 110 0 00 001
Q ss_pred ccchhhhhccCChHHHHHHHHHHHHHhc--CCCCCCCC--hHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHH---hhh
Q 000167 287 KSGFWEGVKATKWSERKDAVAELTKLAS--TKRIAPGD--FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARG---LRT 358 (1972)
Q Consensus 287 ~~~f~~~l~s~kWkeR~eaL~~L~~l~~--~~ki~~~~--y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~---L~~ 358 (1972)
-+...+.+..-.-|+.|...|..|+. .|...-.. ..+.++.|...+. |.+......|+.+|..|+.+ .+.
T Consensus 540 --~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 540 --ALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp --HHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred --HHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 23333444455667888888888763 33321111 1346777777777 55655667899999999864 222
Q ss_pred chhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000167 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1972)
Q Consensus 359 ~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~ 432 (1972)
.+-. ...+|.|...+.+.+..|+.++..++..++.+ .... ...++.+...+++.+..+|.+++..|..+..
T Consensus 618 ~Ii~--aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 618 RIIK--EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHH--TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 2211 24689999999999999999999999988753 0001 1356777778889999999999988888765
Q ss_pred hcChhHHHHhh--hhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 433 TSSKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 433 ~~~~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.++ ......+ ...+|.|+.+|.+.+.++|..|..++..+..
T Consensus 695 ~s~-~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 695 VSV-KCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HCH-HHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred CCH-HHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 432 2222333 3588999999999999999999999988875
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.4e-05 Score=88.08 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=136.0
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCC-CCCCCC-hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTK-RIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 365 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~-ki~~~~-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 365 (1972)
-+...+.+.++..|.+|+..|..++... .....- -..+++.|.+.+.+.+..++..|+.+|+.|+.+-...-... -.
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 4666678999999999999999988432 100000 01367788888998899999999999999985332211111 23
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-----hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~-----l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (1972)
..+|.|+..+.+..+.++..+..+|..+....... -..+++.+...+++.++.+|..++..|..+....+.. ..
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~ 174 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-KQ 174 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-HH
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH-HH
Confidence 57899999999999999999999998886430000 1236788889999999999999999999877643222 11
Q ss_pred Hh-hhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 441 KV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 441 ~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
.. -...++.|.+++.+.+++||..|..+|..+.
T Consensus 175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 11 2357899999999999999999999998764
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0001 Score=87.12 Aligned_cols=162 Identities=15% Similarity=0.044 Sum_probs=122.8
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH-HhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k-~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
.+...+.+.+|..|..|+..|..+... ......+++.|.. .++|.+..|+..|+.+++.++.+.. .+...+
T Consensus 58 ~L~~~l~d~~~~vR~~A~~aL~~l~~~----~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~ 129 (280)
T 1oyz_A 58 LAIEFCSDKNYIRRDIGAFILGQIKIC----KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKI 129 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHSCCC----TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHH
Confidence 355667888999999999988776432 1234566777764 4569999999999999999876432 345578
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (1972)
++.++..+.+..+.||.++..+|..+. -...++.+...+++.++.+|..++..|..+ ... -+.++
T Consensus 130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~~--------~~~~~ 194 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRATAFAISVIN------DKATIPLLINLLKDPNGDVRNWAAFAININ-KYD--------NSDIR 194 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHHHHHHHHHHHH-TCC--------CHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhh-ccC--------cHHHH
Confidence 899999999999999988877776442 234778888889999999999998888664 211 14567
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
+.+.+++.|.++.||..|..+|+.+.
T Consensus 195 ~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 195 DCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999997654
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.4e-05 Score=88.54 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=137.0
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCC-C-CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh-
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTK-R-IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS- 364 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~-k-i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~- 364 (1972)
+.|++.+.+.+...|..|+..|..++... . ...---..+++.|.+.+.+.+..+...|+.+|+.|+.+-...-...+
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 46888899999999999999998765321 0 00000013667888889988899999999999999864322212222
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000167 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1972)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l-------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1972)
...+|.|+..+++....++..+..+|..+... ... ..+++.|...+++.++.+|..++..|..+.... ..
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~ 171 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE 171 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence 24899999999999999999999999888653 111 136788999999999999999999998865433 22
Q ss_pred HHHHh-hhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 438 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 438 ~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
..... -..++|.|+..+.+.+++||..|..+|+.+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 22211 2568899999999999999999999998886
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.1 Score=72.38 Aligned_cols=287 Identities=16% Similarity=0.168 Sum_probs=161.8
Q ss_pred hhhHHHHHHHHHHHhhcCh------------hHHHHHHHHhh----hhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHH
Q 000167 697 KTRAHAMKCLTTFSEAVGP------------GFIFERLYKIM----KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 760 (1972)
Q Consensus 697 K~r~~a~~~L~~l~e~~~~------------~~vl~~l~~~l----~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li 760 (1972)
+..+++.-+|.+++|.+.. ..+++-+...+ ....+|+|+..+++.+.+.-+-|....--+.+++
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L 537 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALI 537 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 3578888888899887542 13443333322 2267899999999999888777765433456777
Q ss_pred HHHHh-cCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCC
Q 000167 761 DFCKD-TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (1972)
Q Consensus 761 ~~l~~-~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~ 839 (1972)
..+.. .|+.++++.||.+|..++..+-+..++.+.+|++ .+++.+..-+.... + |...
T Consensus 538 ~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~----~il~~l~~lL~~~~-~----~~~~------------ 596 (980)
T 3ibv_A 538 EYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTE----SSLAMLGDLLNISV-S----PVTD------------ 596 (980)
T ss_dssp HHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHH----HHHHHTTGGGCCCC-C----CCCC------------
T ss_pred HHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHH----HHHHHHHHhhcCcC-C----CCCc------------
Confidence 77655 2488999999999999999998887766655543 34444444332110 0 0000
Q ss_pred CCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHcccc--CCCCChhhHHHHHH----hcccc-----ch
Q 000167 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR--IQPAGTGELFGGLR----GRLYD-----SN 908 (1972)
Q Consensus 840 ~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~--I~~~~~~eL~~~L~----~~L~D-----sN 908 (1972)
.|. | ..+.+++. ++.....+..-.+.++.++...... -+...+..++..|. ..+.. .+
T Consensus 597 --~~~-~-----~~~~~~~~---~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~ 665 (980)
T 3ibv_A 597 --MDA-P-----VPTLNSSI---RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALEN 665 (980)
T ss_dssp ----C-S-----SCCHHHHH---HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CH
T ss_pred --ccc-c-----ccchhhhc---ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccH
Confidence 000 0 00011111 1224455566666777666532100 00011223333322 22211 11
Q ss_pred HHHHHHHHHHHHHHHHHcChh------hHhhhhhHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHH
Q 000167 909 KNLVMATLITLGAVASAMGPA------VEKSSKGVLSDILKCLG--DNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTT 978 (1972)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~------~~~~~~~llp~ll~~L~--D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~ 978 (1972)
..-....+.+++.++++.... +......+++.++..|. .+...||+++..++..++..+| +..++|.+.+
T Consensus 666 ~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~ 745 (980)
T 3ibv_A 666 IISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLIS 745 (980)
T ss_dssp HHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHH
Confidence 112234466778888776321 44455667777766565 4668899999999999999987 4556776666
Q ss_pred HHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHH
Q 000167 979 ALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKP 1016 (1972)
Q Consensus 979 ~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~p 1016 (1972)
.|-.. +.+..=.+.+..+...+...+.. +.+..++.|
T Consensus 746 ~ll~~-~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~ 784 (980)
T 3ibv_A 746 ILLNS-IDMNELVDVLSFISQLIHIYKDNMMEITNRMLPT 784 (980)
T ss_dssp HHHHH-CCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHH
T ss_pred HHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65421 12333456666666666666543 223444444
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00046 Score=73.17 Aligned_cols=198 Identities=20% Similarity=0.311 Sum_probs=145.6
Q ss_pred hhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHH
Q 000167 292 EGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (1972)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (1972)
.-+.+.-|..++.|+.-+..++..- +.-|..++..|.-.+. +..+..-.+-...+|.+|..=. ..++.++|.
T Consensus 39 ~~LDDDlwtV~kNAl~vi~~i~~~~---~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P----e~v~~vVp~ 111 (253)
T 2db0_A 39 ELLDDDLWTVVKNAISIIMVIAKTR---EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP----ELVKSMIPV 111 (253)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTC---GGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHH
T ss_pred HHhccHHHHHHHhHHHHHHHHHHHh---HHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----HHHHhhHHH
Confidence 3457889999999999998887521 2346667777766666 7777776666788888776321 347789999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000167 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1972)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (1972)
++..+.-..+.++-...-+|..++..+...+..++.+|..-+.+||-.=|..+++|+..+=+++ .++...++|-+
T Consensus 112 lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-----~~yv~PfLprL 186 (253)
T 2db0_A 112 LFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-----FKYVNPFLPRI 186 (253)
T ss_dssp HHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-----HHHHGGGHHHH
T ss_pred HHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-----ccccCcchHHH
Confidence 9999877777788888888999887634446788999999999999999999999987643322 24567788999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHhCc--hhHHHhHhhcc---HHHHHHHHHHHh
Q 000167 451 MECLNDGTPEVRDAAFSVLAAIAKSVGM--RPLERSIEKLD---DVRRNKLSEMIA 501 (1972)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~l~~~~ge--~~~~~~l~~Ld---~~~~kkI~e~~~ 501 (1972)
..+|.|.|.-||..|.++|+.+...-.. +.+..-+..++ +.-++++++.+.
T Consensus 187 ~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 187 INLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred HHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999999988854331 12333334443 345666766654
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00037 Score=80.30 Aligned_cols=189 Identities=17% Similarity=0.123 Sum_probs=139.6
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcC-CCCCCCC-hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 365 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki~~~~-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 365 (1972)
.+...+.+.+...|..++..|..++.. +.....- -...++.|...+.+.+..++..|+.+++.|+..-....... -.
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 127 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 127 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 455667788899999999999998753 2110000 01357788888888899999999999999985322111111 23
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1972)
..+|.|++.+++..+.++..+..+|..+... .... ..+++.+...+.+.++.+|..++..|..+.... +...
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 205 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAI 205 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHH
Confidence 5799999999999999999999999888653 1000 137788999999999999999999998876532 2222
Q ss_pred HHh-hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCch
Q 000167 440 LKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1972)
Q Consensus 440 ~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~ 479 (1972)
... -..+++.+...+.+.+++||..|..+|+.+....+..
T Consensus 206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 221 2457899999999999999999999999999876654
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.1 Score=72.32 Aligned_cols=611 Identities=10% Similarity=0.055 Sum_probs=308.2
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccc---CHHHHHHHHHHHHHHHHHhhhc----hhhhhhhHHH
Q 000167 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDV---NIAVAVEAIQAIGNLARGLRTH----FSGSSRFLLP 369 (1972)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~---N~~V~~~A~~~l~~La~~L~~~----f~~~~~~llp 369 (1972)
.+-..|++|.+-|..+-+.|. . ......++.+. +..+..-|++++....+.+... -..+++..+-
T Consensus 20 sd~~~r~~A~~~L~~~q~sp~-----a---w~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll 91 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSSST-----G---WKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVW 91 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHSTT-----H---HHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcChh-----H---HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHH
Confidence 467889999998888766542 2 22333344432 7889999999999988866554 3444554444
Q ss_pred HHHHHhc--cCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHhcC----------
Q 000167 370 VLLEKLK--EKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVP-LVRSLTLNWVTFCIETSS---------- 435 (1972)
Q Consensus 370 ~LL~klk--dkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp-~vR~~~l~~L~~~l~~~~---------- 435 (1972)
.++.... ...+.|+..+..++..++.+ ....-..+++++...++..++ ..-...+.+|..+-+...
T Consensus 92 ~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~ 171 (980)
T 3ibv_A 92 SYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQ 171 (980)
T ss_dssp HHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHH
Confidence 4555543 34578999999999999987 123345788888888876554 222222333321112210
Q ss_pred -------hhHHHH-hhhhHHHHHHH----HhcCCChHHHHHHHHHHHHHHHHhCchh------HHHhHhhc-cHHHHHHH
Q 000167 436 -------KAAVLK-VHKDYVPICME----CLNDGTPEVRDAAFSVLAAIAKSVGMRP------LERSIEKL-DDVRRNKL 496 (1972)
Q Consensus 436 -------~~~l~~-~l~~l~p~l~k----~l~Ds~~~VR~aA~~~l~~l~~~~ge~~------~~~~l~~L-d~~~~kkI 496 (1972)
+..+.. .++.+.+.+.. +.+..+++++..+.+|+..+..-+.-.. +.-++.-| ++.-+..-
T Consensus 172 ~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~~~~r~~A 251 (980)
T 3ibv_A 172 IQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQIEELRCAA 251 (980)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTSHHHHHHH
T ss_pred HhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCChHHHHHH
Confidence 001111 12333444444 4444788999898888888876443211 11122222 11112211
Q ss_pred HHH----HhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 497 SEM----IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQ 572 (1972)
Q Consensus 497 ~e~----~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~ 572 (1972)
-++ +.+... + . .+..-..... -.+. -
T Consensus 252 ~ecL~ei~~k~~~--------------------~---~---~k~~li~~l~-L~~~--------------------~--- 281 (980)
T 3ibv_A 252 CETMTEIVNKKMK--------------------P---L---EKLNLLNILN-LNLF--------------------F--- 281 (980)
T ss_dssp HHHHHHHHHSCCC--------------------H---H---HHHHHHHHHH-HHHH--------------------H---
T ss_pred HHHHHHHHHcCCC--------------------h---h---hHHHHHHHHh-HHHH--------------------H---
Confidence 222 111100 0 0 0000000000 0000 0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHhhcc---CcHHHHHhhhcCC-h---HHHHHHHHHHHHHHHhccccchhHHHHHHH
Q 000167 573 ETSKLTEAPEDVEPSEMSLEEIESRLGSL---IPADTVGQLKSAV-W---KERLEAISSLRQQVEAVQNLDQSVEILVRL 645 (1972)
Q Consensus 573 ~~s~~~~~~~~~~~~~~s~ee~e~~~~~l---l~~~l~~~L~s~~-W---k~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~ 645 (1972)
..... ..-. .|....+..+ ++.+++.. .+.. | ..+..+...+. ...+.+++.
T Consensus 282 --~~l~~-------~~~D-~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~----------~ll~~lL~~ 340 (980)
T 3ibv_A 282 --SKSQE-------QSTD-PNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLY----------NLFPYLIRY 340 (980)
T ss_dssp --CC------------CC-HHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHH----------HTHHHHHHH
T ss_pred --HHHhc-------cccc-HHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHH----------HHHHHHHHH
Confidence 00000 0000 1111111111 12222222 1111 1 11111222221 123334444
Q ss_pred HhcCCCCccchHHHHHHHHHHHHHHHHHc---CC---Cc---hhhHHHHHHHHHhhhcc-------h-----------hh
Q 000167 646 VCMLPGWSEKNVQVQQQVIEVINYLAATA---TK---FP---KKCVVLCLLGISERVAD-------I-----------KT 698 (1972)
Q Consensus 646 L~~~p~~~DsN~qV~~~~Le~l~~l~~~~---~~---~~---~~~~~~il~~LveKlgd-------~-----------K~ 698 (1972)
+.. ...-|...++++|..++... +. .. +..+..+++.++.|+.= . -.
T Consensus 341 ~~~------~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~ 414 (980)
T 3ibv_A 341 LSD------DYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEM 414 (980)
T ss_dssp HTC------SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHH
T ss_pred hCC------CchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHH
Confidence 332 12355666777777666432 11 11 23455566666666531 0 13
Q ss_pred hHHHHHHHHHHHhhcChhHHHH----HHHHhhh------hCCChHHHHHHHHHHHHHHHHhCCCC-------CChhhHHH
Q 000167 699 RAHAMKCLTTFSEAVGPGFIFE----RLYKIMK------DHKNPKVLSEGILWMVSAVEDFGVSH-------LKLKDLID 761 (1972)
Q Consensus 699 r~~a~~~L~~l~e~~~~~~vl~----~l~~~l~------~~KnpKv~~e~l~~L~~~i~~fG~~~-------l~~k~li~ 761 (1972)
|.... .|...+...+++.++. .+...+. .+.+|+.+..++-.|..+-+.....+ -.+..+++
T Consensus 415 Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ 493 (980)
T 3ibv_A 415 RKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQ 493 (980)
T ss_dssp HHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHH
T ss_pred HHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHH
Confidence 55555 7777888888888877 3333221 13468888888888776655322101 01234666
Q ss_pred HHHhcCCC-----CCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCC
Q 000167 762 FCKDTGLQ-----SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1972)
Q Consensus 762 ~l~~~gL~-----~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s 836 (1972)
++..+ +. +.+|.||..+..+++..+.|+...- .|+ |.
T Consensus 494 ll~~l-l~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-~~l----~~-------------------------------- 535 (980)
T 3ibv_A 494 ILALV-TTSQVCRHPHPLVQLLYMEILVRYASFFDYES-AAI----PA-------------------------------- 535 (980)
T ss_dssp HHHHH-HHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-TTH----HH--------------------------------
T ss_pred HHHHH-HhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-hhH----HH--------------------------------
Confidence 66554 43 7889999999999999988874210 011 11
Q ss_pred CCCCCCCCCCcccccccccHHHHH--hcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc----ch--
Q 000167 837 VSSGGSDGLPREDISGKFTPTLVK--SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD----SN-- 908 (1972)
Q Consensus 837 ~~~~~~d~lprvdIs~~l~~~ll~--~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D----sN-- 908 (1972)
+...++. ++.+.+-++|..|...+..+++.+.+.+.+. ..+++..|...|.- .+
T Consensus 536 -----------------~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~-~~~il~~l~~lL~~~~~~~~~~ 597 (980)
T 3ibv_A 536 -----------------LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNY-TESSLAMLGDLLNISVSPVTDM 597 (980)
T ss_dssp -----------------HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSS-HHHHHHHTTGGGCCCCCCCCC-
T ss_pred -----------------HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhH-HHHHHHHHHHhhcCcCCCCCcc
Confidence 1122334 4555666678888889999999887777665 47788888776641 00
Q ss_pred ---------------HHHHHHHHHHHHHHHHHcCh---hhHhhhhhHHHHHHHHhC----CCc----HH-HHHHHHHHHH
Q 000167 909 ---------------KNLVMATLITLGAVASAMGP---AVEKSSKGVLSDILKCLG----DNK----KH-MRECTLTVLD 961 (1972)
Q Consensus 909 ---------------~~V~~~Al~~l~~La~alg~---~~~~~~~~llp~ll~~L~----D~k----~~-Vr~Aa~~aL~ 961 (1972)
.+-...-.+++|.|+..++. .-..|+..++++++..+. ..+ .. -......+++
T Consensus 598 ~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~ 677 (980)
T 3ibv_A 598 DAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIG 677 (980)
T ss_dssp -CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHH
T ss_pred cccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence 11233356778888877764 234688888888776653 111 11 1123345556
Q ss_pred HHHHhcC------------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcC-C-CCHH
Q 000167 962 AWLAAVH------------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT-D-KSSD 1027 (1972)
Q Consensus 962 ~i~~~~~------------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~-D-~~~d 1027 (1972)
.+++-.. +..+++.+...|..=..+..+|..+...+.+.+...+. ++.+.+.+++..|- + ...+
T Consensus 678 ~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~--~~~p~lp~~i~~ll~~~~~~e 755 (980)
T 3ibv_A 678 NFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGP--DMLPKVPQLISILLNSIDMNE 755 (980)
T ss_dssp HHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHH--HHTTTHHHHHHHHHHHCCTTT
T ss_pred HHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH--hHHHHHHHHHHHHHhcCCHHH
Confidence 6655431 11233344444442111467888888888877765543 24444555444332 2 1222
Q ss_pred HHHHHHHHHHHHHHHcChhHHHHHhc
Q 000167 1028 VRKAAEACIVEILRAGGQETIEKNLK 1053 (1972)
Q Consensus 1028 VR~aA~~~l~~l~~~~G~~~~~~~l~ 1053 (1972)
.. ..-..++.++..+|.+ +.+.+.
T Consensus 756 ~~-~fL~l~~qli~~f~~~-~~~~l~ 779 (980)
T 3ibv_A 756 LV-DVLSFISQLIHIYKDN-MMEITN 779 (980)
T ss_dssp HH-HHHHHHHHHHHHTTTT-SHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHH-HHHHHH
Confidence 22 2234556666667766 444443
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=97.83 E-value=0.086 Score=73.23 Aligned_cols=198 Identities=11% Similarity=0.055 Sum_probs=140.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHhhhc-hhhhhhhHHHHHHHH
Q 000167 298 KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD--VNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEK 374 (1972)
Q Consensus 298 kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D--~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp~LL~k 374 (1972)
.|+.=++.|..+..+... .-..-++..|.+.+.+ .+=.....++-|+|.++.++... ..+++..++|.|+..
T Consensus 429 ~f~~~Rd~L~~l~~l~~~-----~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l 503 (1023)
T 4hat_C 429 LYKSEREVLVYLTHLNVI-----DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL 503 (1023)
T ss_dssp HHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHH-----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHh
Confidence 354334666555554321 1122344555555653 56778888999999999998765 679999999999988
Q ss_pred hc-----cCcHHHHHHHHHHHHHHHHh---cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH-------
Q 000167 375 LK-----EKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV------- 439 (1972)
Q Consensus 375 lk-----dkk~~V~~aa~~aL~al~~~---~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l------- 439 (1972)
+. |.|..|++.+.-++...... ....+..++..++.++...+|.+...++..+..+.+.+.....
T Consensus 504 ~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~ 583 (1023)
T 4hat_C 504 CVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1023)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred hhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 75 46777776665555442221 1123667888888999888999999999999988887765422
Q ss_pred HHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchh-HHHhHhhccHHHHHHHHHHH
Q 000167 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMI 500 (1972)
Q Consensus 440 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~-~~~~l~~Ld~~~~kkI~e~~ 500 (1972)
.+++..++..+..++++-.+.-+....++++.+....+... ...++..|-+.-..+..+.+
T Consensus 584 ~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~ 645 (1023)
T 4hat_C 584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIV 645 (1023)
T ss_dssp SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHH
Confidence 35778888889999999999999999999999999998654 55577666554444555544
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00016 Score=83.39 Aligned_cols=184 Identities=20% Similarity=0.170 Sum_probs=136.4
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 365 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 365 (1972)
.+...+.+.++..|..|+..|..++....-....+ ..+++.|.+.+.+.+..+...|+.+++.|+..-...-... -.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 85 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 85 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence 46677888889999999999999885331000000 1467888889998889999999999999986421111111 22
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1972)
..+|.++..+++....++..+..+|..+... .... ..+++.|...+++.++.+|..++..|..+.... +...
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~ 163 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAI 163 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHH
Confidence 5799999999999999999999999988742 1010 146888899999999999999999999865533 2211
Q ss_pred HH-hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 440 LK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 440 ~~-~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.. .-..++|.++.++.+.+++||..|..+++.+..
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 11 125588999999999999999999999988874
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=97.78 E-value=6.2e-05 Score=87.31 Aligned_cols=184 Identities=12% Similarity=0.095 Sum_probs=135.7
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcC-CCCCCCC-hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 365 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki~~~~-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 365 (1972)
.+...+.+.++..|..|+..|..++.. +.....- -...++.|...+.+.+..++..|+.+|+.|+..-....... -.
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC
Confidence 466667788899999999999998752 2110000 01367788888998899999999999999986543331222 23
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-h-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~-l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1972)
..+|.|+..+.+....|+..+..+|..+... ... . ..+++.+...+++.++.+|..++..|..+... .+...
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~ 215 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQK 215 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS-CHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC-CHHHH
Confidence 5899999999999999999999999888653 100 0 24578888999999999999999999987643 22222
Q ss_pred HHhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 440 ~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.... ..+++.+..++.+.+++||..|..+|+.+..
T Consensus 216 ~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 2222 3488999999999999999999999986643
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=97.73 E-value=7.5e-05 Score=84.03 Aligned_cols=184 Identities=17% Similarity=0.215 Sum_probs=131.7
Q ss_pred cHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh
Q 000167 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1972)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (1972)
.+-|...+.+.++.+|.+|+..|..+..........-.-...++.|...|.+.+..++..|+.+|+.|+..-........
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 45677888999999999999999998742110000000024678888889999999999999999998743211112222
Q ss_pred -hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000167 935 -KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1972)
Q Consensus 935 -~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1972)
...+|.++..|.+.+..+|..|..+|..+..... -..+++.+...|.+. ++.+|..++..|.......+.
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHH
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCcH
Confidence 3478999999999999999999999998875321 133678888888876 688999998888766543221
Q ss_pred CC-Ch--hhhHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000167 1007 FP-DA--AHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 1007 ~~-~~--~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1972)
.. .+ ...+..+...+.+.+.+||+.|..+|..+.
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 10 01 124556888899999999999999998764
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0059 Score=64.88 Aligned_cols=167 Identities=14% Similarity=0.179 Sum_probs=116.4
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHh----ccccchHHHHHHHHHHHHHHHHHcChh
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG----RLYDSNKNLVMATLITLGAVASAMGPA 929 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~----~L~DsN~~V~~~Al~~l~~La~alg~~ 929 (1972)
+.++++..+.|.-|.+|++|+.-+-.++.+ +.++...+.. .+.-+ +|+-.-++++.++|.-
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~---------~~el~epl~~kL~vm~~ks------EaIpltqeIa~a~G~l 97 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKT---------REDLYEPMLKKLFSLLKKS------EAIPLTQEIAKAFGQM 97 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---------CGGGHHHHHHHHHHHHHHC------CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHH---------hHHHHHHHHHHHHHHHhhc------ccCchHHHHHHHHhHH
Confidence 556778889999999999999998888753 2444433332 22111 2233334445544432
Q ss_pred --hH-hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccC
Q 000167 930 --VE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1972)
Q Consensus 930 --~~-~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~ 1004 (1972)
.. ..++.++|.++..+.-..+.+|--..-+|..++...+ +..++..+...+.++ +-.-|..+|+|+.. .
T Consensus 98 a~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltsk--d~~Dkl~aLnFi~a----l 171 (253)
T 2db0_A 98 AKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSK--NREDKLTALNFIEA----M 171 (253)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS--SHHHHHHHHHHHHT----C
T ss_pred HHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHH----H
Confidence 22 3577899999999877777788888888999988875 455666777777766 56678899988863 2
Q ss_pred CCC--CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 1005 SGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1005 ~~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
+.. ..+.+.++-++..|.|++.-||..|.++|..+..
T Consensus 172 Gen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 172 GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLAT 210 (253)
T ss_dssp CTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred hccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHH
Confidence 221 1345666669999999999999999999987653
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0012 Score=78.66 Aligned_cols=173 Identities=14% Similarity=0.114 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHH-HhcccCHHHHHHHHHHHHHHHHHhhhchhhhh--hhHHHHHHHH
Q 000167 300 SERKDAVAELTKLASTKRIAPGDF--TEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEK 374 (1972)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y--~~l~~~L~k-~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~k 374 (1972)
.+|..|++.|..++...... .++ ...++.|.. .+.+.+..|+..|+.+|+.++.+-. ....++ ...+|.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna-~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHH-HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhH-HHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHH
Confidence 46888888888877532100 011 123456666 8888899999999999999996421 112221 2588999999
Q ss_pred hc-cCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHH
Q 000167 375 LK-EKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYV 447 (1972)
Q Consensus 375 lk-dkk~~V~~aa~~aL~al~~~~~~~l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~ 447 (1972)
++ +.+..|+..+.-||..++.+..... ...++.|...|++.++.+|..++..|..+....+ ....... .-++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcCCH
Confidence 98 4588999999999999886410111 1356788888999999999999999998776532 2222222 4588
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 475 (1972)
|.|+.+|...++.||+.|..+++.+...
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999865
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0027 Score=70.62 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=139.9
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (1972)
++.+-+.+++=+.-..|++.|..|+.+-.+.+.+|.-+..+|+..+++.|-.+...|+..++.+ ......+.++
T Consensus 79 ~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~ 152 (265)
T 3b2a_A 79 VFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVR 152 (265)
T ss_dssp HHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHH
Confidence 5666667777777778999999998777788889999999999999999998988888888777 2333456677
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000167 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1972)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~--~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1972)
..++..++.++..|..++..++..+..++ ...+..|+..|..-+++++|.++.-++..+.+++...-+..+...+..+
T Consensus 153 ~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~ 232 (265)
T 3b2a_A 153 TYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKI 232 (265)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHH
Confidence 77777778999999999999999998761 1337899999999999999999999999999988764333333333444
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHHHH
Q 000167 447 VPICMECL-NDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 447 ~p~l~k~l-~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
...+.... -...|.+|+.|+.....+-.
T Consensus 233 ~~~v~~l~~~~~~~~~~~ka~~v~~~le~ 261 (265)
T 3b2a_A 233 SRIVDGLVYREGAPIIRLKAKKVSDLIDS 261 (265)
T ss_dssp HHHHHHGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHH
Confidence 44444444 68899999999877655543
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0055 Score=68.15 Aligned_cols=181 Identities=13% Similarity=0.138 Sum_probs=142.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (1972)
.++..+.|+|-.++..++..+++++..+++......+.++++.+...+.+.|-.|...|++|++.|.....-.=+.| .-
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y-~K 115 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF-LK 115 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH-HH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH-HH
Confidence 46677899999999999999999998754444443468899999999999999999999999999987765443343 45
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHH
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (1972)
+..++.....+++..++..+...++.+ ..+. ...+...+...+.++ +++++...+..+.........+..+..++.
T Consensus 116 l~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i~~~I~~ 192 (265)
T 3b2a_A 116 AAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGHLTLILD 192 (265)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCCGGGTTT
T ss_pred HHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 677888888899999999999999998 4444 577888888888655 799999999998876554443444566666
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 1016 PASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
-+...|...++.+++-|-.++..+..
T Consensus 193 eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 193 EIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp THHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 67778888899999999887776643
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.003 Score=77.70 Aligned_cols=150 Identities=11% Similarity=0.057 Sum_probs=102.3
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
+.+...+-+.+|..|..|.-.|+.+++......+-. ...|. -.|++++..||- .+|.-|+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~~N~---DLAvRLLCVLAL---DRFGDYV--- 236 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IRVDS---KLFSKIYEILVT---DKFNDFV--- 236 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CCCCT---THHHHHHHHHHH---BCCBBCS---
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------ccccH---HHHHHHHHHHHh---ccccccc---
Confidence 345566789999999999999999884221111100 22232 445555555542 2333332
Q ss_pred HHHHHHHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000167 368 LPVLLEKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1972)
Q Consensus 368 lp~LL~klkd-kk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1972)
.| -...|||.+.++|.++ .+-... -.++..+...+.+..|++|.+.+.-|..+ ...+.. ++.+
T Consensus 237 --------SDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~V 300 (800)
T 3oc3_A 237 --------DDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGL 300 (800)
T ss_dssp --------SSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHH
T ss_pred --------cCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHH
Confidence 22 2457999999999999 662222 35666666667889999999988887765 222222 6889
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 447 VPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 447 ~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
+++++.+|.|.+.+||..|+++|.-+.
T Consensus 301 v~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 301 CRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 999999999999999999999997766
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.4 Score=62.07 Aligned_cols=374 Identities=13% Similarity=0.045 Sum_probs=203.3
Q ss_pred hhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh-h-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hhh---
Q 000167 55 PLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-A-KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---EAV--- 126 (1972)
Q Consensus 55 ~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~-~-~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~---~~~--- 126 (1972)
+.+-+++...|..+|..|..+|..+...... .... + ...+|.||+-.-...+.+++.|..+|..+... +.-
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 3445667888999999999988766543222 1111 1 24678999874346899999999988888753 111
Q ss_pred --hhHHHHHHHHhhc-CChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhh------------------cCCChhHH
Q 000167 127 --DVFLDVMEKAIKN-KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF------------------DHQDQNVR 185 (1972)
Q Consensus 127 --~~v~~~L~~~~~~-KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll------------------~~~d~~VR 185 (1972)
...++.|+..+.+ ..+.++..+..+|..+-...-.+..=++.-++.|..++ ...|..|+
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 2346666777765 56777777776666543311111100122344555543 22367999
Q ss_pred HHHHHHHHHHHHhhCCchhhHHHh--hhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhh---hhhccccCCCCCCCC
Q 000167 186 ASSKGLTLELCRWIGKDPVKTILF--EKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKEL---GQELISEDVGPGPSE 260 (1972)
Q Consensus 186 ~~a~~l~~ely~~lG~~~l~~~l~--~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~---~~~a~~~~~~~~~~~ 260 (1972)
..|..++..|-..- ++ .+..+. ..+-+..+.-|....++.. +.........-.. ......+..
T Consensus 210 ~nAa~~L~NLs~~~-~~-~R~~i~~~~Gli~~LV~~L~~~~~~~~----~~~~~~enav~aL~NLs~~~~~e~~------ 277 (584)
T 3l6x_A 210 TNTAGCLRNVSSER-SE-ARRKLRECDGLVDALIFIVQAEIGQKD----SDSKLVENCVCLLRNLSYQVHREIP------ 277 (584)
T ss_dssp HHHHHHHHHHTSSC-HH-HHHHHHHSTTHHHHHHHHHHHHHHTTC----CSCHHHHHHHHHHHHHHTTHHHHST------
T ss_pred HHHHHHHHHHhcCC-HH-HHHHHHHcCCcHHHHHHHHHHhhcccC----ccHHHHHHHHHHHHHhhcccccccc------
Confidence 99988887775321 11 112221 2333344444433322211 1000000000000 000000000
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHHhc-ccC
Q 000167 261 ESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR-IAPGDFTEVCRTLKKLIT-DVN 338 (1972)
Q Consensus 261 ~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~k-i~~~~y~~l~~~L~k~l~-D~N 338 (1972)
..+.| .+. .+ . +........++ +..---..+++.|..++. ..+
T Consensus 278 --------~~~~~--~~~------~~-~------------------~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~ 322 (584)
T 3l6x_A 278 --------QAERY--QEA------AP-N------------------VANNTGTSPARGYELLFQPEVVRIYISLLKESKT 322 (584)
T ss_dssp --------TCCC-----------------------------------------CCCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred --------chhhh--hhh------cc-c------------------ccccccccCchhHHHHhcccHHHHHHHHHccCCC
Confidence 00001 000 00 0 00000111111 100001256677778886 457
Q ss_pred HHHHHHHHHHHHHHHHHhh---hchhhhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH-----hHHHHH
Q 000167 339 IAVAVEAIQAIGNLARGLR---THFSGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-----DVVEDV 408 (1972)
Q Consensus 339 ~~V~~~A~~~l~~La~~L~---~~f~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~-----~il~~l 408 (1972)
..+...|+.+|..|+.+-. ..+...+ ...+|.|++.+......|+.++..||..+... .... .+++.+
T Consensus 323 ~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~~I~~g~ip~L 400 (584)
T 3l6x_A 323 PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD--ARNKELIGKHAIPNL 400 (584)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hhHHHHHHhCCHHHH
Confidence 8899999999999986421 1222222 35699999999999999999999999999875 2222 356777
Q ss_pred HHHhhcC--------ChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHhC
Q 000167 409 KTSVKNK--------VPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG--TPEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 409 ~~~l~~K--------np~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds--~~~VR~aA~~~l~~l~~~~g 477 (1972)
...|.+. +..+...++..|..++...+.. ..... ...+|.|+.++.+. .+.++++|..+|..+ +.
T Consensus 401 V~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~-~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl---~~ 476 (584)
T 3l6x_A 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA-AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI---WG 476 (584)
T ss_dssp HHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH---HT
T ss_pred HHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH---Hc
Confidence 7777654 3567778888887766543322 11111 45789999999876 788888887777655 44
Q ss_pred chhHH
Q 000167 478 MRPLE 482 (1972)
Q Consensus 478 e~~~~ 482 (1972)
.+.+.
T Consensus 477 ~~elr 481 (584)
T 3l6x_A 477 YKELR 481 (584)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 54443
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0073 Score=71.92 Aligned_cols=169 Identities=13% Similarity=0.124 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHh-ccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHHHHH
Q 000167 868 KVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDIL 942 (1972)
Q Consensus 868 k~R~eale~l~~ll~~a~--~~I~~~~~~eL~~~L~~-~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp~ll 942 (1972)
..|..|++.|..++..-. ..+.. .| .+..|.. .|...+..|+..|+.+|+.++.. .+.....+ ...+|.++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~--~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQ--LS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHH--TT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHH--cC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHH
Confidence 468889999998885210 11111 13 3456666 88889999999999999999853 22233332 25889999
Q ss_pred HHhC-CCcHHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC-CCh--h
Q 000167 943 KCLG-DNKKHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA--A 1011 (1972)
Q Consensus 943 ~~L~-D~k~~Vr~Aa~~aL~~i~~~~~--l-----~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~-~~~--~ 1011 (1972)
..|. +.+..+|..|.-||..++.... . ...+|.|...|.++ ++.++..++..|.......+.. ..+ .
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv~~ 208 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCSM 208 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence 9998 4578899999999999886432 1 23677888888876 6889998887776655442211 011 2
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 1012 ~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
..+++++..|.+.+.+||..|..+|..+...
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 3566799999999999999999999988865
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00022 Score=74.16 Aligned_cols=119 Identities=15% Similarity=0.069 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH
Q 000167 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404 (1972)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~i 404 (1972)
.-...|...++|.+..++..|+.+++.+.. + -++.|++.++|..+.||..+..+|..+ .-...
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-------~----~~~~L~~~L~d~~~~vR~~A~~aL~~~------~~~~a 74 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD-------E----AFEPLLESLSNEDWRIRGAAAWIIGNF------QDERA 74 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS-------T----THHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-------h----HHHHHHHHHcCCCHHHHHHHHHHHHhc------CCHHH
Confidence 445566777888887788888777764421 1 158899999999999998877766543 22567
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 000167 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1972)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1972)
++.+...+++.+|.||..++..|..+- -+..++.|.+.+.|.++.||.+|..+|+.
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~-----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHC-----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 888889999999999999998887641 13457889999999999999999998864
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.29 Score=64.63 Aligned_cols=362 Identities=12% Similarity=0.081 Sum_probs=197.1
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhccccc----hhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCch
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~----~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (1972)
+.+...+.+ -..|.-|.-.|.++....+... .-.+.+.++|.. .....+..+++.|.++--. +..-.
T Consensus 299 ~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~------~~~~~~~~AvEgLaYLSl~-~~VKe 369 (778)
T 3opb_A 299 QLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISR------RIVPKVEMSVEALAYLSLK-ASVKI 369 (778)
T ss_dssp HHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTT------CCHHHHHHHHHHHHHHTTS-SHHHH
T ss_pred HHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHhCC-HHHHH
Confidence 444555544 2667777778877765532211 123445555532 1112367777777765421 21111
Q ss_pred h--hHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcC--h-----hHHHHHHHHhhhhCCChHHHH---------HHHHH
Q 000167 680 K--CVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG--P-----GFIFERLYKIMKDHKNPKVLS---------EGILW 741 (1972)
Q Consensus 680 ~--~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~--~-----~~vl~~l~~~l~~~KnpKv~~---------e~l~~ 741 (1972)
. .-..++..|++-+.+.........++..+...+. + +.-+.+|.+++ +++.|+... +...+
T Consensus 370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A-~~~~p~~~~~d~~~~~~~~v~~~ 448 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXX-XXXXPAADKVGAEKAAKEDILLF 448 (778)
T ss_dssp HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------------CCTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhc-cccCcccCcccccccchHHHHHH
Confidence 1 1134566666666542223344444544444221 1 12345555554 222333221 11111
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhh--hcccHHHHHHHHHHHhcCCCC
Q 000167 742 MVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFE 819 (1972)
Q Consensus 742 L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~efek~~~~ 819 (1972)
-..++-+. .+++.+..+ +.+.++.+|..|.+++..|-.. +..+..+ .+--
T Consensus 449 ~~~~l~ea--------GvIp~Lv~L-l~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal----------------- 500 (778)
T 3opb_A 449 NEKYILRT--------ELISFLKRE-MHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAV----------------- 500 (778)
T ss_dssp HHHHTTTT--------THHHHHHHH-GGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHH-----------------
T ss_pred HHHHHHHC--------cCHHHHHHH-HcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCH-----------------
Confidence 22222222 356666677 8888999999999998888422 2233222 1111
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCH---HHHHHHHHHHHHHHHHccccCCC--CChh
Q 000167 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDW---KVRLESIEAVNKILEEANKRIQP--AGTG 894 (1972)
Q Consensus 820 ~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~W---k~R~eale~l~~ll~~a~~~I~~--~~~~ 894 (1972)
+.++..+.+..- ..|..|...|..++...++.+.. ....
T Consensus 501 ------------------------------------~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~ 544 (778)
T 3opb_A 501 ------------------------------------KIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSAL 544 (778)
T ss_dssp ------------------------------------HHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST
T ss_pred ------------------------------------HHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccc
Confidence 123333322221 36888999999988654433311 1113
Q ss_pred hHHHHHHhccc-cchH-------------HHHHHHHHHHHHHHHHcCh---hhH-hhhh--hHHHHHHHHhCCCcHHHHH
Q 000167 895 ELFGGLRGRLY-DSNK-------------NLVMATLITLGAVASAMGP---AVE-KSSK--GVLSDILKCLGDNKKHMRE 954 (1972)
Q Consensus 895 eL~~~L~~~L~-DsN~-------------~V~~~Al~~l~~La~alg~---~~~-~~~~--~llp~ll~~L~D~k~~Vr~ 954 (1972)
+.++.|...|. +... .-...|+.+|+.||..-+. +.. ..+. ..+|.+...+.+.+..||.
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vrr 624 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHH
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHH
Confidence 67888888886 2221 1266889999999875432 332 2444 4789999999999999999
Q ss_pred HHHHHHHHHHHhcC-c-hhh-----------HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC----CChhhhHHHH
Q 000167 955 CTLTVLDAWLAAVH-L-DKM-----------VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPA 1017 (1972)
Q Consensus 955 Aa~~aL~~i~~~~~-l-~~l-----------l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl 1017 (1972)
+|..++..++.+.. + ..+ ++.+...+... +...|..+...|+..-...+.. -.....+.++
T Consensus 625 AA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~L 702 (778)
T 3opb_A 625 STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTIPLIAKELLTKKELIENA 702 (778)
T ss_dssp HHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHH
Confidence 99999999996542 2 233 44566666654 6888888886666432222210 1112455667
Q ss_pred HhhcCC--CCHHHHHHHHHHHHHHHH
Q 000167 1018 SIAMTD--KSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1018 ~~~L~D--~~~dVR~aA~~~l~~l~~ 1041 (1972)
+..|.| .+.++|..+..++.-+..
T Consensus 703 l~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 703 IQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 778888 899999999999998886
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=7.1 Score=55.35 Aligned_cols=378 Identities=12% Similarity=0.031 Sum_probs=192.0
Q ss_pred HHHHHHhhhcchhhhHHHHHHHHHHHhhcC-hh-------HH----HHHHHHhhhhCC--C-hHHHHHHHHHHHHHHHHh
Q 000167 685 CLLGISERVADIKTRAHAMKCLTTFSEAVG-PG-------FI----FERLYKIMKDHK--N-PKVLSEGILWMVSAVEDF 749 (1972)
Q Consensus 685 il~~LveKlgd~K~r~~a~~~L~~l~e~~~-~~-------~v----l~~l~~~l~~~K--n-pKv~~e~l~~L~~~i~~f 749 (1972)
+++.++.-+.++.+|..|.+||..++.... ++ .+ +..++..+.... . ...-.+.+..+++++..+
T Consensus 250 ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~l 329 (1204)
T 3a6p_A 250 LLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCAL 329 (1204)
T ss_dssp HHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHH
Confidence 666667667788899999999999987432 11 00 123333321010 0 122233344444444444
Q ss_pred C-------------CCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcC
Q 000167 750 G-------------VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1972)
Q Consensus 750 G-------------~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~ 816 (1972)
| ...-.+..+++.+..+ +.|.+..|-..+...-..+.+.........+...-+.++..+...+.|.
T Consensus 330 g~~l~~l~~~~~~~~~~~~l~~~l~~lL~~-t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~ 408 (1204)
T 3a6p_A 330 GNQLCALLGADSDVETPSNFGKYLESFLAF-TTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKM 408 (1204)
T ss_dssp HHHHHHHHHTCSSCCCCTTHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhccccccChhHHHHHHHHHHHH-HhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 3 1122456788888887 8888877777777665555554321111122233344444444446777
Q ss_pred CCCCCCC-CCCccccccccCCCCCCCC-------------CC------CCcccccccccHHHHHhcC-------------
Q 000167 817 PFEGTVV-PKKTVRASESTSSVSSGGS-------------DG------LPREDISGKFTPTLVKSLE------------- 863 (1972)
Q Consensus 817 ~~~~~~~-p~r~~r~~~~~~s~~~~~~-------------d~------lprvdIs~~l~~~ll~~l~------------- 863 (1972)
.+..... |....- ..+. ++..+ +. +-+.+....+.+-+...+.
T Consensus 409 ~yp~~~~~~~~~~~-~~D~---d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~ 484 (1204)
T 3a6p_A 409 GFPSKTDSPSCEYS-RFDF---DSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSA 484 (1204)
T ss_dssp CCSSCCSSTHHHHH-HHHC---SSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------
T ss_pred cCccccCCcchhhh-hccc---CCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 5521000 000000 0000 00000 00 0000000000011111111
Q ss_pred ------------CCCHHHHHHHHHHHHHHHHHccccC-CCCChhhHHHHHHhcc---ccchHHHHHHHHHHHHHHHHHcC
Q 000167 864 ------------SPDWKVRLESIEAVNKILEEANKRI-QPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMG 927 (1972)
Q Consensus 864 ------------d~~Wk~R~eale~l~~ll~~a~~~I-~~~~~~eL~~~L~~~L---~DsN~~V~~~Al~~l~~La~alg 927 (1972)
+..|..+......++.++.+..... .+.....++..|...+ +..+..++..++.+++.+..-+.
T Consensus 485 ~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~ 564 (1204)
T 3a6p_A 485 VGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVT 564 (1204)
T ss_dssp ------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGG
T ss_pred cccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHh
Confidence 2357777776666666665431112 1222112333333332 34566788888999988776543
Q ss_pred hhhHhhhhhHHHHHHHHhCC------------CcHHHHHHHHHHHHHHHHhcC--chhhHH----HHHHHHhcCC-CChh
Q 000167 928 PAVEKSSKGVLSDILKCLGD------------NKKHMRECTLTVLDAWLAAVH--LDKMVP----YVTTALTDAK-LGAE 988 (1972)
Q Consensus 928 ~~~~~~~~~llp~ll~~L~D------------~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~----~l~~~L~~~~-~~~~ 988 (1972)
. -..|+..++..++..+.+ ..+.||.+|..++..++..++ +-..++ .+...+.... .+..
T Consensus 565 ~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~ 643 (1204)
T 3a6p_A 565 Y-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQM 643 (1204)
T ss_dssp T-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHH
T ss_pred c-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHH
Confidence 2 135677777888877766 456899999999999999985 333334 3334444333 3455
Q ss_pred HHHHHHHHHHHHhccCCC---CCC-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHH--H-
Q 000167 989 GRKDLFDWLSKQLTGLSG---FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL--A- 1061 (1972)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~---~~~-~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~--~- 1061 (1972)
.+..+...+.-.-...+. ... +..++.|++..+.+ ++++. +..-...|+..+|-+....+....++..+ .
T Consensus 644 e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~--~~~~~-~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~ 720 (1204)
T 3a6p_A 644 EKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS--QDMHR-VLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRAR 720 (1204)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC--HHHHH-HHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc--HHHHH-hhcCHHHHHHHhCCCCCcccccccchhhhhHHH
Confidence 566666665433111122 122 45677787777754 44555 33444678888887665555544554322 3
Q ss_pred ------HHHHHHhhcc
Q 000167 1062 ------LILERIKLNG 1071 (1972)
Q Consensus 1062 ------~I~~~l~k~~ 1071 (1972)
.+...+++.+
T Consensus 721 l~~~~~~l~~~l~r~~ 736 (1204)
T 3a6p_A 721 MSFCVYSILGVVKRTC 736 (1204)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5667777753
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.051 Score=65.87 Aligned_cols=281 Identities=10% Similarity=0.066 Sum_probs=128.4
Q ss_pred CCCchhhHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhcChh--HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhC
Q 000167 675 TKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG--FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750 (1972)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~~~--~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG 750 (1972)
..|+...+..+.+.++.-+... ..|....-.+..++.. ..+ .+.+.+.+-+ +++||-+|.-++..|+.+...
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~-- 134 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDM-TGKEDSYRGPAVRALCQITDS-- 134 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHH-HSSCHHHHHHHHHHHHHHCCT--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhc-CCCcHhHHHHHHHHHhcCCCH--
Confidence 4577666677777777666553 3566666666666554 222 3467777775 799999999999999888631
Q ss_pred CCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000167 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (1972)
Q Consensus 751 ~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~ 830 (1972)
. =+..+...++.+ +.|.||.||.+|.-+...||....+-++.|++.
T Consensus 135 --~-m~~~l~~~lk~~-L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~------------------------------ 180 (355)
T 3tjz_B 135 --T-MLQAIERYMKQA-IVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNE------------------------------ 180 (355)
T ss_dssp --T-THHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHH------------------------------
T ss_pred --H-HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHH------------------------------
Confidence 1 145788889997 999999999999998877775543333333221
Q ss_pred ccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhc-cccchH
Q 000167 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNK 909 (1972)
Q Consensus 831 ~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~-L~DsN~ 909 (1972)
+.+.+.|.|--+-..|+..+..+... + ...+..++..|... +.+ .
T Consensus 181 ---------------------------l~~ll~d~n~~V~~~Al~lL~ei~~~-d----~~a~~kLv~~l~~~~l~~--~ 226 (355)
T 3tjz_B 181 ---------------------------AQEAASSDNIMVQYHALGLLYHVRKN-D----RLAVSKMISKFTRHGLKS--P 226 (355)
T ss_dssp ---------------------------HHHHTTCSSHHHHHHHHHHHHHHHTT-C----HHHHHHHHHHHHSSCCSC--H
T ss_pred ---------------------------HHHHhcCCCccHHHHHHHHHHHHHhh-c----hHHHHHHHHHHhcCCCcC--h
Confidence 22222333333333344444443321 0 00012222222221 111 1
Q ss_pred HHHHHHHHHHHHHHHHcChhh-HhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCC
Q 000167 910 NLVMATLITLGAVASAMGPAV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLG 986 (1972)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~-~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~~~~ 986 (1972)
-.. +.+|..+. .+++.= ......++..+...|..+...|.=.|..++-.+-.... +......+...|.++ +
T Consensus 227 ~~q---~~llr~l~-~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~--d 300 (355)
T 3tjz_B 227 FAY---CMMIRVAS-RQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSP--K 300 (355)
T ss_dssp HHH---HHHHHHHT-CC-----------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSS--S
T ss_pred HHH---HHHHHHHH-HhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCC--C
Confidence 111 12222221 222221 22345566677777888888888777777777654211 222344555667665 4
Q ss_pred hhHHHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCCHHHHHHHHHHH
Q 000167 987 AEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACI 1036 (1972)
Q Consensus 987 ~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l 1036 (1972)
+.+|.-++..|.......+. ....+.. +..|+.|.|..++-.|.-.|
T Consensus 301 ~niryvaLr~L~~l~~~~P~---~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 301 AALRYAAVRTLNKVAMKHPS---AVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp SSSHHHHHHCC----------------------------------------
T ss_pred chHHHHHHHHHHHHHHHCcH---HHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 67899999988877665543 3333444 88899999988877765443
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.41 Score=61.89 Aligned_cols=372 Identities=10% Similarity=0.056 Sum_probs=192.3
Q ss_pred hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhc
Q 000167 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVAD--IKTRAHAMKCLTTFSEAV 713 (1972)
Q Consensus 638 ~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~ 713 (1972)
..+.++.+|. ..+..++..+...|..++.... -.+..+ .-.||.||..|.. ..++..|..+|..++...
T Consensus 49 ~i~~LV~~L~------s~~~~~q~~Aa~~L~~La~~~~-~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 49 ELPEVIAMLG------FRLDAVKSNAAAYLQHLCYRND-KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred cHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 3566777663 2345667777777777664211 111122 1357888887755 467888888998887531
Q ss_pred Chh--------HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCC-CC---ChhhHHHHHH--hcCC-----------
Q 000167 714 GPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HL---KLKDLIDFCK--DTGL----------- 768 (1972)
Q Consensus 714 ~~~--------~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~-~l---~~k~li~~l~--~~gL----------- 768 (1972)
+.+ -.++.|+..+....++.++..+...|..+-..-... .+ -+..|+..+. ..|.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccc
Confidence 111 135666666644467777776665555543210000 00 1233444331 0011
Q ss_pred CCCchhHHHHHHHHHHHHHHhhChhHHhhh---hcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 000167 769 QSSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (1972)
Q Consensus 769 ~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L---~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~l 845 (1972)
...+..|+..|..+|..|-.. ++..+..+ +++.+.++..|.....+..... +.+...
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~-----~~~ena-------------- 261 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSDS-----KLVENC-------------- 261 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSC-----HHHHHH--------------
T ss_pred ccccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccH-----HHHHHH--------------
Confidence 233578999999988888532 22222222 4566777777766543321100 000000
Q ss_pred CcccccccccHHHHHhcC-CCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHH
Q 000167 846 PREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVA 923 (1972)
Q Consensus 846 prvdIs~~l~~~ll~~l~-d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D-sN~~V~~~Al~~l~~La 923 (1972)
+-+...|.-..-.... ...|...... +....... ..+.+..-.-..++..|...|.+ .+..+...|+.+|..|+
T Consensus 262 --v~aL~NLs~~~~~e~~~~~~~~~~~~~-~~~~~~~~-~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ 337 (584)
T 3l6x_A 262 --VCLLRNLSYQVHREIPQAERYQEAAPN-VANNTGTS-PARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337 (584)
T ss_dssp --HHHHHHHHTTHHHHSTTCCC---------------C-CCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHhhccccccccchhhhhhhccc-cccccccc-CchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 0000000000000000 0000000000 00000000 01111100002455666777754 47788899999999997
Q ss_pred HHcCh---hhHhhh--hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch-----hhHHHHHHHHhcCC------CCh
Q 000167 924 SAMGP---AVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-----KMVPYVTTALTDAK------LGA 987 (1972)
Q Consensus 924 ~alg~---~~~~~~--~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~-----~ll~~l~~~L~~~~------~~~ 987 (1972)
..-+. .+...+ ...+|.|+..|......|+.+|..+|..+....... ..+|.|...|.+.. .+.
T Consensus 338 ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~ 417 (584)
T 3l6x_A 338 AGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSE 417 (584)
T ss_dssp SSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCH
T ss_pred cCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchH
Confidence 54322 222233 356999999999999999999999999998766533 35566777776542 123
Q ss_pred hHHHHHHHHHHHHhccCCCCC-Ch--hhhHHHHHhhcCCC--CHHHHHHHHHHHHHHH
Q 000167 988 EGRKDLFDWLSKQLTGLSGFP-DA--AHLLKPASIAMTDK--SSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~~-~~--~~ll~pl~~~L~D~--~~dVR~aA~~~l~~l~ 1040 (1972)
++...++..|...+...+... .+ ...+.+|+..+.+. ...++++|..+|..+.
T Consensus 418 ~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 418 DTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 556667777765554322111 11 23456688888765 7888888887776554
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.34 Score=61.25 Aligned_cols=387 Identities=11% Similarity=-0.001 Sum_probs=204.1
Q ss_pred hHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh--hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh-h-hhh-----
Q 000167 57 FKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL-E-AVD----- 127 (1972)
Q Consensus 57 ~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~--~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~-~-~~~----- 127 (1972)
+-+++...|..+|..|+.+|..+...... .... -...+|.||+-+-+..+.++..|..++..+.-. + .-.
T Consensus 7 lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~ 85 (457)
T 1xm9_A 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85 (457)
T ss_dssp HHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 44567777889999999999887643221 1111 234688888763336788999998888877743 1 112
Q ss_pred hHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhh--------cC--------CChhHHHHHHH
Q 000167 128 VFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF--------DH--------QDQNVRASSKG 190 (1972)
Q Consensus 128 ~v~~~L~~~~~-~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll--------~~--------~d~~VR~~a~~ 190 (1972)
..++.|...+. +.+++++..++.+|.++-..-..+..=++..++.|..++ .+ .+..|...|..
T Consensus 86 G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~ 165 (457)
T 1xm9_A 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATG 165 (457)
T ss_dssp TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHH
T ss_pred CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHH
Confidence 33567777787 789999999999998876531111100125778888888 22 34556667777
Q ss_pred HHHHHHHhhCCchhhHHHhh--hChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhh-hh--ccccCCCCCCCCCCCCC
Q 000167 191 LTLELCRWIGKDPVKTILFE--KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELG-QE--LISEDVGPGPSEESTAD 265 (1972)
Q Consensus 191 l~~ely~~lG~~~l~~~l~~--~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~-~~--a~~~~~~~~~~~~~~~~ 265 (1972)
++..|... ++ .+..+.+ +.-|..+..|......... ..+. ......... -. ...+.. .+
T Consensus 166 aL~nLs~~--~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~---~~~~-~e~a~~~L~nLs~~~~~~~~-~~-------- 229 (457)
T 1xm9_A 166 CLRNLSSA--DA-GRQTMRNYSGLIDSLMAYVQNCVAASRC---DDKS-VENCMCVLHNLSYRLDAEVP-TR-------- 229 (457)
T ss_dssp HHHHHTTS--HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCT---TCTT-HHHHHHHHHHHTTTHHHHSC-CH--------
T ss_pred HHHHHccC--HH-HHHHHHHcCCCHHHHHHHHHhhccccCC---chHH-HHHHHHHHHhcccchhccCc-ch--------
Confidence 77766653 22 2233321 3333344444332211100 0000 000000000 00 000000 00
Q ss_pred CCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHh---cCCCC-CCCChHHHHHHHHHHhc-ccCHH
Q 000167 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA---STKRI-APGDFTEVCRTLKKLIT-DVNIA 340 (1972)
Q Consensus 266 ~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~---~~~ki-~~~~y~~l~~~L~k~l~-D~N~~ 340 (1972)
.....+ .......... .. ..| .....+. +..+.+ + .+. ..++- ..--..++++.|...+. ..+..
T Consensus 230 -~~~~~~-~~~~~~~~~~-~~-~~~-~~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 230 -YRQLEY-NARNAYTEKS-ST-GCF-SNKSDKM---MNNNYD-C-PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp -HHHHHH-TC------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred -hhhccc-cccccccccc-cc-chh-hccchhh---hhcccc-C-CccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 000000 0000000000 00 111 1111100 000000 0 000 00100 00002356677777777 55678
Q ss_pred HHHHHHHHHHHHHHHhhh---ch-hhhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHH
Q 000167 341 VAVEAIQAIGNLARGLRT---HF-SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVK 409 (1972)
Q Consensus 341 V~~~A~~~l~~La~~L~~---~f-~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l-----~~il~~l~ 409 (1972)
+...|+-+|..|+.+-.. .. ...+ ...+|.|++.+......|+..+..+|..+... ... ..+++.++
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv 377 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVT 377 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHH
Confidence 888889999999865332 11 1112 35789999999999999999999999988754 122 23567777
Q ss_pred HHhhcCCh------HHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Q 000167 410 TSVKNKVP------LVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG-TPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 410 ~~l~~Knp------~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds-~~~VR~aA~~~l~~l~ 473 (1972)
.-|.+.++ .+...++..|..++...+.. ..... ...++.|..++... +.+|+..|...|..++
T Consensus 378 ~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~-~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 77776543 56678888888877654432 11111 24678888888888 8999998888776443
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.066 Score=64.94 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=129.2
Q ss_pred CCCCCCCcccccccCcccchhhhhcc--CChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHH
Q 000167 271 DEYELVDPVDILTPLEKSGFWEGVKA--TKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347 (1972)
Q Consensus 271 D~~dl~~~vdIl~kl~~~~f~~~l~s--~kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~ 347 (1972)
.||.-.|...|+... ..| .+ .+-+.+++++..+..+. .+..+....-..++..+.|++...|..+....--
T Consensus 17 ~p~~~~~k~~v~qe~--r~f----n~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYL 90 (355)
T 3tjz_B 17 NPFQHLEKSAVLQEA--RVF----NETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYL 90 (355)
T ss_dssp ---CCCCHHHHHHHG--GGT----TSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHH
T ss_pred CccccchHHHHHHHH--HHh----cCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 456555555555432 123 33 24445566888877655 4533332334567778888998888877777766
Q ss_pred HHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHH
Q 000167 348 AIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1972)
Q Consensus 348 ~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L 427 (1972)
.+..+++. ...+-.+...+.+=+.++++.+|-.|..+|..+... .-++.+.+.+..++.|++|-||..++-..
T Consensus 91 yl~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVRk~A~l~~ 163 (355)
T 3tjz_B 91 TIKEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVSSSALVSS 163 (355)
T ss_dssp HHHHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 66666554 344568899999999999999998776666666432 44678888899999999999999998888
Q ss_pred HHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 428 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 428 ~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.+++...+ . .++.++..+..++.|+++.|-..|..++..+.+
T Consensus 164 ~kL~~~~p-e----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 164 LHLLKCSF-D----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHTTTCH-H----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhccCH-H----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 87765432 2 236788899999999999998777776666653
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=1 Score=59.47 Aligned_cols=376 Identities=10% Similarity=0.084 Sum_probs=204.5
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh---h
Q 000167 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY---A 91 (1972)
Q Consensus 15 pl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~---~ 91 (1972)
||.+.+... =..|.-|.--|.++...... ......+....+.+++.+.....+.-++|.|..+ ..-.. .... -
T Consensus 299 ~~L~~~l~~-~~ir~lAavvL~KL~~~~~~-~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~~~-VKe~L~~d 374 (778)
T 3opb_A 299 QLLERSLNV-EDVQIYSALVLVKTWSFTKL-TCINLKQLSEIFINAISRRIVPKVEMSVEALAYL-SLKAS-VKIMIRSN 374 (778)
T ss_dssp HHHHHHTTS-GGGHHHHHHHHHHHTGGGTC-TTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH-TTSSH-HHHHHHHC
T ss_pred HHHHHHhcc-HHHHHHHHHHHHHHhcCCCC-CcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-hCCHH-HHHHHHhC
Confidence 333444332 36788888888887654322 2223455677788888887767799999987544 33221 1111 1
Q ss_pred HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh-h------hhHHHHHHHHhhcCChhhHHHHHHHHH-HHHHHhCCC
Q 000167 92 KEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA-V------DVFLDVMEKAIKNKVAKAVVPAIDVMF-QALSEFGAK 162 (1972)
Q Consensus 92 ~~v~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~-~------~~v~~~L~~~~~~KnpKv~~~~l~~l~-~~l~~fG~~ 162 (1972)
...+..|++-+-. .+. .....++..+.-+.. . +.=+..|.+..+++.|+.-...-.... +-+.+|-.+
T Consensus 375 ~~~L~~Lv~llk~~~d~---s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~ 451 (778)
T 3opb_A 375 ESFTEILLTMIKSQKMT---HCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEK 451 (778)
T ss_dssp HHHHHHHHHHHTTTCCT---THHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHH
Confidence 3345666655321 122 233444444443311 1 112333433333334432110000000 011222221
Q ss_pred ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhh
Q 000167 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (1972)
Q Consensus 163 ~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (1972)
.+-=..+++.|..++.+.++++|+.|..++..|-.. ...+..+.+ +-.+...+
T Consensus 452 ~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d---~~~R~~lvq------qGal~~LL------------------ 504 (778)
T 3opb_A 452 YILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS---KNFIPQLAQ------QGAVKIIL------------------ 504 (778)
T ss_dssp HTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS---GGGHHHHHH------TTHHHHHH------------------
T ss_pred HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHH------CCCHHHHH------------------
Confidence 111123677888899999999999988877766422 112222210 00000000
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccC-Ch--HHHHHHHHHHHHHh--cCCC
Q 000167 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKAT-KW--SERKDAVAELTKLA--STKR 317 (1972)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~-kW--keR~eaL~~L~~l~--~~~k 317 (1972)
..+.+. .. .-|..|+..|..++ .+|.
T Consensus 505 -------------------------------------------------~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 505 -------------------------------------------------EYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp -------------------------------------------------HHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred -------------------------------------------------HHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 000000 00 23677888887765 2333
Q ss_pred CCC-C-ChHHHHHHHHHHhc-ccCH-------------HHHHHHHHHHHHHHHHhh---hch-hhhhh--hHHHHHHHHh
Q 000167 318 IAP-G-DFTEVCRTLKKLIT-DVNI-------------AVAVEAIQAIGNLARGLR---THF-SGSSR--FLLPVLLEKL 375 (1972)
Q Consensus 318 i~~-~-~y~~l~~~L~k~l~-D~N~-------------~V~~~A~~~l~~La~~L~---~~f-~~~~~--~llp~LL~kl 375 (1972)
+.- + ...+.++.|...+. +... .-...|+.+|..||..=. .+. ...+. ..+|.|.+.+
T Consensus 536 ~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL 615 (778)
T 3opb_A 536 LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM 615 (778)
T ss_dssp HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGG
T ss_pred HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHH
Confidence 211 1 11257777777776 3332 226789999999997531 111 12333 4789999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCh-HhH-----------HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000167 376 KEKKPTVAESLTQTLQAMHKAGCLNL-VDV-----------VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1972)
Q Consensus 376 kdkk~~V~~aa~~aL~al~~~~~~~l-~~i-----------l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1972)
.+.+..|+.++.+++..++.+ .... ..+ ++.+..-+...+..+|.+++.+|+.+-...+. .....+
T Consensus 616 ~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~-ia~~ll 693 (778)
T 3opb_A 616 LDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL-IAKELL 693 (778)
T ss_dssp GCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHT
T ss_pred hCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH-HHHHHH
Confidence 999999999999999999865 1111 122 55677778899999999999888876443332 112222
Q ss_pred --hhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHH
Q 000167 444 --KDYVPICMECLND--GTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 444 --~~l~p~l~k~l~D--s~~~VR~aA~~~l~~l~~~ 475 (1972)
...+..++..+.| .++++|..+..++..+...
T Consensus 694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 3577888899999 8999999999999998864
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=95.72 E-value=12 Score=52.07 Aligned_cols=177 Identities=7% Similarity=0.009 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc-----cchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHH
Q 000167 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-----DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (1972)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~-----DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp 939 (1972)
.+|+.|..++-.++.|..+.........+.++++.|...+. |.+..|+..++-++|..+.-+..+ ..|++.++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 58999999999999987421111001113456666665554 455556667889999888766433 457889999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHh
Q 000167 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI 1019 (1972)
Q Consensus 940 ~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~ 1019 (1972)
.++..+.|+++.|..+|..|+..+++.|+-. +.....++ ..+.+..++.-+..
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~---------l~~~~~~e------------------~~p~~~~il~~l~~ 596 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYH---------FVIQQPRE------------------SEPFIQTIIRDIQK 596 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTHH---------HHSCCTTC------------------SSCHHHHHHHTHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH---------hhccCCCC------------------CchhHHHHHHHHHH
Confidence 9999999999999999999999999887611 11000000 01112222222344
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHcChhH-HHHHhccCChHHHHHHHHHHhh
Q 000167 1020 AMTDKSSDVRKAAEACIVEILRAGGQET-IEKNLKDIQGPALALILERIKL 1069 (1972)
Q Consensus 1020 ~L~D~~~dVR~aA~~~l~~l~~~~G~~~-~~~~l~~L~~~~~~~I~~~l~k 1069 (1972)
++.+-...-+..+.+++..++...+.+. ...++..|=+.-...++..+++
T Consensus 597 ~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~ 647 (1023)
T 4hat_C 597 TTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQ 647 (1023)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455566777888899999998888654 5556666655555555555543
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=13 Score=52.61 Aligned_cols=187 Identities=13% Similarity=0.029 Sum_probs=105.3
Q ss_pred ChHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhc-c------cCHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 000167 298 KWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT-D------VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1972)
Q Consensus 298 kWkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~-D------~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (1972)
+=..|.-|+..|+..+.. ..+...+...|-..|...+. . ....|+...+.++..|++.- |-..+..++
T Consensus 60 ~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d---~p~~Wp~ll 136 (1204)
T 3a6p_A 60 VAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKRE---WPQHWPDML 136 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH---STTTCTTHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHh---CcccchHHH
Confidence 334566666666665421 22333333334444444433 1 45778888889998888763 334567888
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHh-cC-----------------CChHhHHHHHHHHhhc----------------
Q 000167 369 PVLLEKLKEKKPTVAESLTQTLQAMHKA-GC-----------------LNLVDVVEDVKTSVKN---------------- 414 (1972)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~-~~-----------------~~l~~il~~l~~~l~~---------------- 414 (1972)
+.|+..+.. ....++.+..+|..+..- .. ..+..|++.+...+++
T Consensus 137 ~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~ 215 (1204)
T 3a6p_A 137 IELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQES 215 (1204)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchh
Confidence 888887755 455677777777777542 00 0122344444444432
Q ss_pred ---CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc-hhHHHhHhhccH
Q 000167 415 ---KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM-RPLERSIEKLDD 490 (1972)
Q Consensus 415 ---Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge-~~~~~~l~~Ld~ 490 (1972)
.++.++..++..+..++.-.+...+...-..+++.+..++.| +++|.+|.+||..++..-.. ....+++.-+.+
T Consensus 216 ~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~ 293 (1204)
T 3a6p_A 216 KAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGD 293 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSH
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhh
Confidence 123455566665555444223222211112478888888874 78999999999999875432 223345555543
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.37 Score=60.95 Aligned_cols=267 Identities=13% Similarity=0.105 Sum_probs=159.3
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCc----cChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhh
Q 000167 130 LDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI----IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVK 205 (1972)
Q Consensus 130 ~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~----~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~ 205 (1972)
++.|...+.+.++.++..++.+|..+. ++... +--...+|.|..++.+.++.|+..|...+..|... .++ .+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~--~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~-~k 79 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTC--FQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STT-NK 79 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHT--SSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHH-HH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHH--cCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHH-HH
Confidence 456667777888899998888888764 23211 10123688999999999999999988777666542 111 11
Q ss_pred HHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccC
Q 000167 206 TILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPL 285 (1972)
Q Consensus 206 ~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl 285 (1972)
..+. + .++ +
T Consensus 80 ~~i~------------------------------------------~---~G~-----------i--------------- 88 (457)
T 1xm9_A 80 LETR------------------------------------------R---QNG-----------I--------------- 88 (457)
T ss_dssp HHHH------------------------------------------H---TTC-----------H---------------
T ss_pred HHHH------------------------------------------H---cCC-----------H---------------
Confidence 1110 0 000 0
Q ss_pred cccchhhhhc-cCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh--------cc--------cCHHHHHHHHHH
Q 000167 286 EKSGFWEGVK-ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI--------TD--------VNIAVAVEAIQA 348 (1972)
Q Consensus 286 ~~~~f~~~l~-s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l--------~D--------~N~~V~~~A~~~ 348 (1972)
+-|.+.+. +.+-..+..|...|..|+..+.....-....++.|.+.+ .+ ....+...|+.+
T Consensus 89 --~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~a 166 (457)
T 1xm9_A 89 --REAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGC 166 (457)
T ss_dssp --HHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHH
T ss_pred --HHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHH
Confidence 12444444 445566777777777776543211100114555566666 21 345677799999
Q ss_pred HHHHHHHhhhchhhhhh--hHHHHHHHHhcc------CcHHHHHHHHHHHHHHHHh------------------------
Q 000167 349 IGNLARGLRTHFSGSSR--FLLPVLLEKLKE------KKPTVAESLTQTLQAMHKA------------------------ 396 (1972)
Q Consensus 349 l~~La~~L~~~f~~~~~--~llp~LL~klkd------kk~~V~~aa~~aL~al~~~------------------------ 396 (1972)
|..|+.. ......... .++|.|+..+.. ....+++.+..+|..+...
T Consensus 167 L~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (457)
T 1xm9_A 167 LRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS 245 (457)
T ss_dssp HHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--------
T ss_pred HHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccccccc
Confidence 9999875 332333332 578888877764 2223455554445443200
Q ss_pred --cCC------------------------Ch-----HhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChh--HH-HH
Q 000167 397 --GCL------------------------NL-----VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKA--AV-LK 441 (1972)
Q Consensus 397 --~~~------------------------~l-----~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~--~l-~~ 441 (1972)
+|. .. ..+++.+...|. ++++.+++.++..|..+.....+. .. ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~ 325 (457)
T 1xm9_A 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQL 325 (457)
T ss_dssp --------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHH
T ss_pred ccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHH
Confidence 000 00 234566666666 567999999998888866543221 12 11
Q ss_pred hh--hhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 442 VH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 442 ~l--~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.+ ...+|.|+++|.+.+.+||..|..++..+..
T Consensus 326 ~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 326 IGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp HHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 22 3578999999999999999999999988865
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=95.49 E-value=3.1 Score=55.35 Aligned_cols=90 Identities=21% Similarity=0.197 Sum_probs=62.2
Q ss_pred hhhhcCCChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHH---hhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhc
Q 000167 8 LKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR---ELGPLFKKTVADSNAPVQDKALDALIAYLKAAD 84 (1972)
Q Consensus 8 ~~~~~~lpl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~---~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~ 84 (1972)
+.+=.=+|+.++|+|.+.+.|..|...|...+... .....+. -+..++.+.+.|+|..|++.|..||..+....+
T Consensus 31 ~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 31 LREDKILPVLKDLKSPDAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred cchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 44456689999999999999999999999887421 1111111 123456778999999999999999988876654
Q ss_pred hhhhhh--hHHHHHHHH
Q 000167 85 ADAGRY--AKEVCDAIA 99 (1972)
Q Consensus 85 ~~~~~~--~~~v~~~Lv 99 (1972)
.++..+ ..+|++.|.
T Consensus 109 ~d~~~~l~~~~il~~L~ 125 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIE 125 (684)
T ss_dssp HHHHHHHHHTTHHHHHH
T ss_pred chHHHHHHHcChHHHHH
Confidence 443332 234555543
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.11 Score=64.36 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=96.2
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
+...|...+-|.+|.+|-.|.-.|++++...... . + +....|. -.|+++|..++
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G--A---G--------R~~~~N~---DLAvRLLCVLA---------- 228 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG--G---D--------IQIRVDS---KLFSKIYEILV---------- 228 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------------CCCCCCT---THHHHHHHHHH----------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC--C---c--------eeccccH---HHHHHHHHHHH----------
Confidence 6778889999999999999999999999853210 0 1 1122233 34444444443
Q ss_pred hhhHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHhcCch-hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC
Q 000167 934 SKGVLSDILKCLGD-----NKKHMRECTLTVLDAWLAAVHLD-KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1972)
Q Consensus 934 ~~~llp~ll~~L~D-----~k~~Vr~Aa~~aL~~i~~~~~l~-~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~ 1007 (1972)
+.+++| .-.+||+.|.++|.++ .+++-+ .++..+...+..+ .|++|.+.+--|... ...-
T Consensus 229 --------LDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~~IL~qLV~~l~~~--~WEVRHGGLLGLKYL-~DLL-- 294 (800)
T 3oc3_A 229 --------TDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPNDIIEQLVGFLDSG--DWQVQFSGLIALGYL-KEFV-- 294 (800)
T ss_dssp --------HBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSCCHHHHHTTGGGCS--CHHHHHHHHHHHHHT-GGGC--
T ss_pred --------hccccccccCeeeeehHHHHHHHHHHH-HhCChhHHHHHHHHhhcCCC--CeeehhhhHHHHHHH-HHHH--
Confidence 334444 3468999999999999 776533 1222222333433 699999887777644 2211
Q ss_pred CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000167 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1972)
..+...+..++.+|.|.+.|||..|+++|.-+.
T Consensus 295 ~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 295 EDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp CCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 124444555888999999999999999886655
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.28 E-value=1.3 Score=59.58 Aligned_cols=256 Identities=17% Similarity=0.117 Sum_probs=157.3
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChh--HHhhh----hcccHH
Q 000167 731 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD--IKGFL----ADVKPA 804 (1972)
Q Consensus 731 npKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~--l~~~L----~~lkp~ 804 (1972)
++.++.+++..|.-+.- |... ..+++.+... +.+.++.+|..|.-.+|-+|.-.|+. +...+ ++....
T Consensus 450 ~~~ir~gAaLGLGla~~--GS~~---eev~e~L~~~-L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~ 523 (963)
T 4ady_A 450 VDVLLHGASLGIGLAAM--GSAN---IEVYEALKEV-LYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGN 523 (963)
T ss_dssp HHHHHHHHHHHHHHHST--TCCC---HHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHH
T ss_pred cHHHHHHHHHHHHHHhc--CCCC---HHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHH
Confidence 37788787776655432 3321 3566777776 77777888999999999988655532 11111 111111
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhc-CCCCHHHHHHHHHHHHHHHHH
Q 000167 805 LLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL-ESPDWKVRLESIEAVNKILEE 883 (1972)
Q Consensus 805 ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l-~d~~Wk~R~eale~l~~ll~~ 883 (1972)
+...+---+..+- +.+.+ ..+.+++.+ .+.+|-.|..++-.+.-.
T Consensus 524 vrR~aalgLGll~---------------------------~g~~e----~~~~li~~L~~~~dp~vRygaa~alglA--- 569 (963)
T 4ady_A 524 ITRGLAVGLALIN---------------------------YGRQE----LADDLITKMLASDESLLRYGGAFTIALA--- 569 (963)
T ss_dssp HHHHHHHHHHHHT---------------------------TTCGG----GGHHHHHHHHHCSCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhh---------------------------CCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHH---
Confidence 1111100000000 00011 123444444 467899999887766522
Q ss_pred ccccCCCCChhhHHHHHHh-ccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHh-CCCcHHHHHHHHHHHH
Q 000167 884 ANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLD 961 (1972)
Q Consensus 884 a~~~I~~~~~~eL~~~L~~-~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L-~D~k~~Vr~Aa~~aL~ 961 (1972)
.....+ ...++.|.. ..+|.+..|++.|+..|+.|+ +|.. ..++.++..| .+.++.||..|.-||.
T Consensus 570 ---yaGTGn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~--~g~~------e~v~rlv~~L~~~~d~~VR~gAalALG 637 (963)
T 4ady_A 570 ---YAGTGN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVL--LRDY------TTVPRIVQLLSKSHNAHVRCGTAFALG 637 (963)
T ss_dssp ---TTTSCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--SSSC------SSHHHHTTTGGGCSCHHHHHHHHHHHH
T ss_pred ---hcCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhc--cCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222222 445553433 447888889998888887763 4432 2255555544 4678999999999999
Q ss_pred HHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC--CCChhhhHHHHHhhcCC--CCHHHHHHHHHHHH
Q 000167 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTD--KSSDVRKAAEACIV 1037 (1972)
Q Consensus 962 ~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~L~D--~~~dVR~aA~~~l~ 1037 (1972)
.+....+...+++.|...+.+. +..+|+.++.-|......... .+.+..++.-+.+.+.| .++.+|-.++-+.+
T Consensus 638 li~aGn~~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 638 IACAGKGLQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp HHTSSSCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 8876677778888777777765 689999999999877655443 24566667767777776 45778988888877
Q ss_pred HHH
Q 000167 1038 EIL 1040 (1972)
Q Consensus 1038 ~l~ 1040 (1972)
.+.
T Consensus 716 ll~ 718 (963)
T 4ady_A 716 IMN 718 (963)
T ss_dssp HHT
T ss_pred HHh
Confidence 665
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.021 Score=59.02 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=62.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (1972)
+.|++.+.|.+|.+|..|+..+..+- . .+.+..|...+.|.+..|+..|+..++.+. -.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~--------~---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~ 103 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQ--------D---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GE 103 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGC--------S---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC--------C---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cH
Confidence 56777788888888888888776431 1 445677777778888888888888877663 13
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000167 936 GVLSDILKCLGDNKKHMRECTLTVLD 961 (1972)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~Aa~~aL~ 961 (1972)
..++.++..+.|..+.||.+|..+|.
T Consensus 104 ~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 104 RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45777888888888888888877764
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=94.80 E-value=1.6 Score=60.21 Aligned_cols=397 Identities=9% Similarity=0.028 Sum_probs=207.9
Q ss_pred hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchh-hh--hhhHHHHHHHHHhhcC-C-ChhHHHHHHHHHHHHHhhhhh--
Q 000167 54 GPLFKKTVADSNAPVQDKALDALIAYLKAADAD-AG--RYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWVELEAV-- 126 (1972)
Q Consensus 54 ~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~-~~--~~~~~v~~~LveK~l~-~-k~~~k~~a~~~ll~~~E~~~~-- 126 (1972)
.+.+..++.|+.-.-|..|.|.+..++...... +. ...-+++..++.++|. + .+.+...=..|+-...+.-+|
T Consensus 510 ~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR 589 (997)
T 1vsy_5 510 FELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRR 589 (997)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhh
Confidence 455667889999999999999998887665331 21 2245577778888886 3 555554323333333332233
Q ss_pred -hhHHHHHHH--H---hhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhC
Q 000167 127 -DVFLDVMEK--A---IKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (1972)
Q Consensus 127 -~~v~~~L~~--~---~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (1972)
..+++.|.. . ....+.=..+.-+..|..++.+.|-+.-..++++..+. ++|+-++||++.-.++..++...-
T Consensus 590 ~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~ 667 (997)
T 1vsy_5 590 SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQS 667 (997)
T ss_dssp CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhc
Confidence 455665522 1 11223334556788888999999987555788887777 999999999999999998887762
Q ss_pred Cch---hhHHHh-------------hhChHHHHHHHHHHHHhcc---CC---CCCCcchhhhhhHhhhhhc----cccCC
Q 000167 201 KDP---VKTILF-------------EKMRDTMKKELEVELVNVS---GT---ARPTRKIRAEQDKELGQEL----ISEDV 254 (1972)
Q Consensus 201 ~~~---l~~~l~-------------~~Lk~~q~keLe~~f~k~~---~~---~~P~R~~rs~~~~~~~~~a----~~~~~ 254 (1972)
-.. +...+- ...++....-+.+.|++++ +. ..|.-..++....-. .+. .+. .
T Consensus 668 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~-kTvl~wl~~~-l 745 (997)
T 1vsy_5 668 NPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRT-STIFYWIKEM-A 745 (997)
T ss_dssp CCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHH-HHHHHHHHHH-S
T ss_pred ccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHH-HHHHHHHHHH-h
Confidence 100 110000 0000111111222222221 00 000000000000000 000 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHH--HHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 000167 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKD--AVAELTKLASTKRIAPGDFTEVCRTLKK 332 (1972)
Q Consensus 255 ~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~e--aL~~L~~l~~~~ki~~~~y~~l~~~L~k 332 (1972)
+.+. ...+-| +++.. ++ | .+....+.++=.+-.. +.-.+..+...+ +.+.....++.+|..
T Consensus 746 ~~~~--------~~~l~~--~~~~~-ll---P--~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~-~~~~~~~~~l~~l~~ 808 (997)
T 1vsy_5 746 RGPN--------KVLLVP--YLVDY-VL---P--FLIGLVKHKDVCALASLDPVRLYAGLGYMP-IRKNHVAAIVDYVCS 808 (997)
T ss_dssp SGGG--------HHHHHH--HHTTT-TT---T--TTCTTSSCSHHHHHTTCCSHHHHHHTSSSC-CCHHHHHHHHHHSSC
T ss_pred cCCC--------ccchhh--hhHHH-HH---H--HHHHHhhcCcHHHHHhhHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 0000 000000 00000 11 1 1211112221111000 111122222222 222333456666666
Q ss_pred Hhc-ccCHHHHHHHHHHHHHHHHHhhhch--h-hhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCC-ChHhHHH
Q 000167 333 LIT-DVNIAVAVEAIQAIGNLARGLRTHF--S-GSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCL-NLVDVVE 406 (1972)
Q Consensus 333 ~l~-D~N~~V~~~A~~~l~~La~~L~~~f--~-~~~~~llp~LL~klkdkk-~~V~~aa~~aL~al~~~~~~-~l~~il~ 406 (1972)
... +.+= .+..++..++.+.- +.-| . .....++..++..+.|+. ..||+.|..+|..++. |. ....+-
T Consensus 809 ~~~~s~sW-~R~~~L~~lq~~~f--~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~--c~~~~~~~~- 882 (997)
T 1vsy_5 809 SNVALSSN-QTKLQLAFIQHFLS--AELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVH--NWKEEQPLL- 882 (997)
T ss_dssp TTTTSCSS-SHHHHHHHHHHHHH--HHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHH--SCCSHHHHH-
T ss_pred HHhcCCcH-HHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--cCCchhhHH-
Confidence 555 4454 55555666555542 2222 1 223567888888899999 9999999999999986 55 433333
Q ss_pred HHHHHhhcCC----------------hHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHHhcCCChHHHHHHHHHH
Q 000167 407 DVKTSVKNKV----------------PLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1972)
Q Consensus 407 ~l~~~l~~Kn----------------p~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 469 (1972)
++...+..+- -..|-++..-|..++...|-.. ..+.++.++..|....+|+.+ |+..+.+++
T Consensus 883 ~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tl 961 (997)
T 1vsy_5 883 SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTI 961 (997)
T ss_dssp HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHH
T ss_pred HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHH
Confidence 3333333221 1355666777777777665332 235568888888888899766 999999999
Q ss_pred HHHHHHhCc
Q 000167 470 AAIAKSVGM 478 (1972)
Q Consensus 470 ~~l~~~~ge 478 (1972)
+.|.+.--+
T Consensus 962 seFkrTH~D 970 (997)
T 1vsy_5 962 SEFKKVRAD 970 (997)
T ss_dssp HHHHHHTST
T ss_pred HHHHhccch
Confidence 999987654
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.26 Score=60.12 Aligned_cols=189 Identities=9% Similarity=0.002 Sum_probs=128.6
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CC--hHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhchhhh-
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GD--FTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~--y~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (1972)
.+...+.+.+-..+..|.-.|..|+.+..-.. .. -...++.|.+.+ ...+..+...|+.++..|+..-...-...
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~ 210 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 210 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHH
Confidence 46666777777888999999988875311000 00 012456666654 45567788899999999987332211222
Q ss_pred -hhhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000167 364 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 430 (1972)
Q Consensus 364 -~~~llp~LL~klkdkk~----~V~~aa~~aL~al~~~--~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~ 430 (1972)
....+|.|++.+...+. .+++.+..+|..+..+ ++... ...++.+...|.+.+..++.+++..|..+
T Consensus 211 ~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290 (354)
T ss_dssp HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24689999999987654 4788888888887752 01010 12578888899999999999999999886
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
... ......... .-.+|.|+.+|.+.++.+|+.|..+|..+...-++
T Consensus 291 a~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 291 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred hCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 532 222222222 34789999999999999999999999988865443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.79 E-value=3.4 Score=55.80 Aligned_cols=157 Identities=14% Similarity=0.163 Sum_probs=95.2
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 000167 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~L 371 (1972)
..++|. +..|+-.|.-|-. ++..+.+..|.+.+. ..+..+...|+-.||.+..|.+.. .+..|
T Consensus 369 k~~~~~-k~sA~aSLGlIh~------g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-------~~~lL 434 (963)
T 4ady_A 369 KAQNWA-KFTATASLGVIHK------GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-------TTDYL 434 (963)
T ss_dssp HCCTHH-HHHHHHHHHHHTS------SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-------HHHHH
T ss_pred ccchHH-HHHHHHHhhhhcc------CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-------HHHHH
Confidence 356775 3455555544432 223345667777775 456788999999999998877642 33444
Q ss_pred HHHhccCc--------HHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000167 372 LEKLKEKK--------PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1972)
Q Consensus 372 L~klkdkk--------~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1972)
.+.+.+.+ ..++.++.-+|--++.. +.=+++++.|...+.+.++.++..+..-|..++-.+..... +
T Consensus 435 ~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G--S~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---i 509 (963)
T 4ady_A 435 KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG--SANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---I 509 (963)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---H
T ss_pred HHHHcCccccccccccHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---H
Confidence 44444333 56676665565554432 33467888888888877777777666666665544332211 2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
..++.. +++|.+..||..+..+|+.++
T Consensus 510 ~~LL~~---~~e~~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 510 HDMFTY---SQETQHGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHHH---HHHCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHH---HhccCcHHHHHHHHHHHHhhh
Confidence 333333 335667788888888887663
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.61 Score=58.72 Aligned_cols=187 Identities=9% Similarity=0.006 Sum_probs=127.1
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CC--hHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhchhhh-
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GD--FTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~--y~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (1972)
.+...+.+.+=..+..|.-.|..|+.+..-.. .. -...++.|.+.+ ...+..+...|+.++..|+..-...-...
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45666777777788888888888864310000 00 012455666654 45577889999999999998432211222
Q ss_pred -hhhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCC-h-----HhHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000167 364 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 430 (1972)
Q Consensus 364 -~~~llp~LL~klkdkk~----~V~~aa~~aL~al~~~--~~~~-l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~ 430 (1972)
....+|.|+..+...+. .+++.+..+|..+..+ ++.. - ...++.+...|.+.+..++.+++..|..+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24689999999877654 3788888888887752 1111 0 12567888889999999999999999887
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 000167 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1972)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 476 (1972)
... .+....... .-.+|.|+.+|...++.+|+.|..+|..+...-
T Consensus 407 a~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 407 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 533 222222222 347899999999999999999999999887643
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=93.50 E-value=6.5 Score=54.54 Aligned_cols=150 Identities=13% Similarity=0.205 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCC-----------------CcH------HHHHHHHHHHHHHHHhcC
Q 000167 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD-----------------NKK------HMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 912 ~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D-----------------~k~------~Vr~Aa~~aL~~i~~~~~ 968 (1972)
...-+++...+|.++|..|.+++..+.+.+++.++- +.+ .||.+....+.+++.+..
T Consensus 690 l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~ 769 (1073)
T 3gjx_A 690 LGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSN 769 (1073)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344567778899999999999999999988866531 112 245555566666666543
Q ss_pred -----chhhHHHHHHHH-h--cCCCChhHH-HHHHHHHHHHhccCCC--CCChhhhHHHHHhh----cC---CCCHHHHH
Q 000167 969 -----LDKMVPYVTTAL-T--DAKLGAEGR-KDLFDWLSKQLTGLSG--FPDAAHLLKPASIA----MT---DKSSDVRK 1030 (1972)
Q Consensus 969 -----l~~ll~~l~~~L-~--~~~~~~~~R-~~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~----L~---D~~~dVR~ 1030 (1972)
...++|.+.+.+ . ..+ .|..| .++|..++..+.+.+. .+.+..++..++.| ++ +..+|.|.
T Consensus 770 ~~~~v~~~~i~pl~~~vl~dY~~~-~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~ 848 (1073)
T 3gjx_A 770 DPQMVAENFVPPLLDAVLIDYQRN-VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRT 848 (1073)
T ss_dssp CHHHHHHHTSHHHHHHTHHHHHHS-CGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHhcC-CcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHH
Confidence 234555555443 1 112 46666 6777777776666554 23444444444443 43 67899999
Q ss_pred HHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHH
Q 000167 1031 AAEACIVEILRAGGQETIEKNLKDIQGPALALILERI 1067 (1972)
Q Consensus 1031 aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l 1067 (1972)
.-.+.+.++..+.-. .+-.|++...+.+.+.+
T Consensus 849 ~ff~ll~~~~~~~f~-----~l~~l~~~~~~~~i~~i 880 (1073)
T 3gjx_A 849 NFFLLLQAVNSHCFP-----AFLAIPPAQFKLVLDSI 880 (1073)
T ss_dssp HHHHHHHHHHHHCGG-----GTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH-----HHHcCCHHHHHHHHHHH
Confidence 999999998877332 34457777666666554
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.6 Score=56.84 Aligned_cols=172 Identities=11% Similarity=0.060 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCC--CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh--hhHHHHHHHHh
Q 000167 301 ERKDAVAELTKLASTKR-IAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEKL 375 (1972)
Q Consensus 301 eR~eaL~~L~~l~~~~k-i~~--~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~kl 375 (1972)
.|.+|...|..|+.+.. ... ..++.+++.|...+...+..+...|+.+|..|+.+-.......+ ...+|.|++.+
T Consensus 100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL 179 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHH
Confidence 47788888888874321 100 11345678888889888888999999999999864111111111 24688999874
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC-------hHhHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000167 376 -KEKKPTVAESLTQTLQAMHKAGCLN-------LVDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 441 (1972)
Q Consensus 376 -kdkk~~V~~aa~~aL~al~~~~~~~-------l~~il~~l~~~l~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 441 (1972)
+.....+++.+..+|..+... +.. -...++.|...+.+.++ .++..++..|..+-.. ........
T Consensus 180 ~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 258 (354)
T 3nmw_A 180 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258 (354)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 556778888888888877652 111 12456777788876654 4888877777654331 12222222
Q ss_pred hh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 442 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
.. ...+|.|+..|.+.+.+|++.|..+|+.+.
T Consensus 259 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 22 337899999999999999999998888775
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.33 E-value=8.2 Score=44.42 Aligned_cols=127 Identities=12% Similarity=0.164 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCc
Q 000167 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1972)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (1972)
.+|.+.|.+++.++-+. .+.-|.++++.+.....|.+..|+...+..|+..+.. + ..++..+++.|...+.|..
T Consensus 30 ~~kl~~L~qa~el~~~~--dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k-~~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS--CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV---K-VELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcc--CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 68999999999976322 2456788999888877799999999888888887732 2 3578889999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----cC--CC----hH-------hHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000167 380 PTVAESLTQTLQAMHKA----GC--LN----LV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1972)
Q Consensus 380 ~~V~~aa~~aL~al~~~----~~--~~----l~-------~il~~l~~~l~~Knp~vR~~~l~~L~~~l~ 432 (1972)
+.|...+..|...++.. -| .+ .. .+-..|+.-+++.|..+|..|+.|+.+++.
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 99998888888887764 11 11 12 233456666788999999999999999885
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.65 Score=58.49 Aligned_cols=172 Identities=11% Similarity=0.062 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhcCCCCCC---CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh--hhHHHHHHHHh
Q 000167 301 ERKDAVAELTKLASTKRIAP---GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEKL 375 (1972)
Q Consensus 301 eR~eaL~~L~~l~~~~ki~~---~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~kl 375 (1972)
.+.+|...|..|+.+..-.. ..++..++.|...+...+..+...|+.+|..|+.+-.......+ ...+|.|++.+
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lL 295 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHH
Confidence 36788888888874321000 11345678888889888888999999999999763111111121 25689999974
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC-------hHhHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000167 376 -KEKKPTVAESLTQTLQAMHKAGCLN-------LVDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 441 (1972)
Q Consensus 376 -kdkk~~V~~aa~~aL~al~~~~~~~-------l~~il~~l~~~l~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 441 (1972)
......+++.+..+|..+..+ +.. -...++.|...|.+... .++..++..|..+-.. ........
T Consensus 296 l~s~~~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 296 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 556778888888888888763 211 12356777777876554 4888887777664431 22222222
Q ss_pred hh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 442 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
.. ...+|.|+..|.+.+.+|++.|..+|+.+.
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 22 347899999999999999999999988775
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=92.78 E-value=3.6 Score=53.05 Aligned_cols=309 Identities=14% Similarity=0.175 Sum_probs=172.0
Q ss_pred hhhHHHHHHHHHhhhcchh---hhHHHHHHHHHHHhhcChhHH---HHHHHHhhhh-CCChHHHHHHHHHHHHHHHHhCC
Q 000167 679 KKCVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGV 751 (1972)
Q Consensus 679 ~~~~~~il~~LveKlgd~K---~r~~a~~~L~~l~e~~~~~~v---l~~l~~~l~~-~KnpKv~~e~l~~L~~~i~~fG~ 751 (1972)
++.+...++.|++++.+.- -|..|...|..++..+..... +..++..+.+ ..+..+...+|+.|..++..-+.
T Consensus 16 ~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp --CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred CCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 3567788899999988754 377777788888766543322 4444554433 35677777788887776542111
Q ss_pred C--------CC-C-----------hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHH
Q 000167 752 S--------HL-K-----------LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDA 811 (1972)
Q Consensus 752 ~--------~l-~-----------~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ 811 (1972)
. .. + -..-+..+..+ |+..+-.||-.++++|..|-..-+...+.. |-.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l-L~~~df~vR~~alqlL~~L~~~r~~~~Q~~-----------Il~ 163 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL-LEEFDFHVRWPGVKLLTSLLKQLGPQVQQI-----------ILV 163 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHSHHHHHHH-----------HHH
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHH-hcCccHHHHHHHHHHHHHHHhcCcHHHHHH-----------HHh
Confidence 0 00 0 02235556677 899999999999999999876544333322 111
Q ss_pred HHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCC
Q 000167 812 EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891 (1972)
Q Consensus 812 efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~ 891 (1972)
.+. . .+.|+..+.|..-.+|.||+-.|..+... |..|+.-
T Consensus 164 ----~p~------------------------------g-----i~~Lv~lL~d~rE~iRneallLL~~Lt~~-n~~iQkl 203 (651)
T 3grl_A 164 ----SPM------------------------------G-----VSRLMDLLADSREVIRNDGVLLLQALTRS-NGAIQKI 203 (651)
T ss_dssp ----STT------------------------------H-----HHHHHGGGGCSSHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred ----Ccc------------------------------c-----HHHHHHHHhCchHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 000 0 14678888999999999999999988864 3444321
Q ss_pred -ChhhHHHHHHhccccc----hHHHHHHHHHHHHHHHHHcChhhHhhhh--hHHHHHHHHhCCCcH-------HHHH--H
Q 000167 892 -GTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKK-------HMRE--C 955 (1972)
Q Consensus 892 -~~~eL~~~L~~~L~Ds----N~~V~~~Al~~l~~La~alg~~~~~~~~--~llp~ll~~L~D~k~-------~Vr~--A 955 (1972)
.|...++.|...+... ...|+.-++.++..|...=..+ ..|.. ..+|.+...|..... .++. .
T Consensus 204 VAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN-Q~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~ 282 (651)
T 3grl_A 204 VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN-QNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHL 282 (651)
T ss_dssp HHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHH
Confidence 1233344444433222 3467888888888887542111 11111 133333333331111 1111 1
Q ss_pred HHHHHHHHHHhcCc-------------hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCC-----------hh
Q 000167 956 TLTVLDAWLAAVHL-------------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-----------AA 1011 (1972)
Q Consensus 956 a~~aL~~i~~~~~l-------------~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~-----------~~ 1011 (1972)
+..++..++...+. ..+++.+...+-.......+|.+++..++..+...+...+ ..
T Consensus 283 ~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~ 362 (651)
T 3grl_A 283 MLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPR 362 (651)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCE
T ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCc
Confidence 23333333222110 1134555666655544567899999988887765432100 01
Q ss_pred h-hHHHHHhhcCCC-CHHHHHHHHHHHHHHH
Q 000167 1012 H-LLKPASIAMTDK-SSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 1012 ~-ll~pl~~~L~D~-~~dVR~aA~~~l~~l~ 1040 (1972)
+ ++..+...+++. .-++|-+|..|+..++
T Consensus 363 p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 363 PAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp EHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 1 222234445554 4689999999998776
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.036 Score=63.79 Aligned_cols=186 Identities=12% Similarity=0.063 Sum_probs=110.6
Q ss_pred HHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhccc
Q 000167 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802 (1972)
Q Consensus 723 ~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lk 802 (1972)
+..+..+.+|.||..+...+ + ...+..+ +.|.++.||..|...+. .+.+..++.|-.
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l-------~---------~~~l~~L-~~D~~~~VR~~aA~~L~------~~~L~~ll~D~d 111 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS-------P---------VEALTPL-IRDSDEVVRRAVAYRLP------REQLSALMFDED 111 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------C---------GGGGGGG-TTCSSHHHHHHHHTTSC------SGGGGGTTTCSC
T ss_pred HHHHhcCCCHHHHHHHHHhC-------C---------HHHHHHH-ccCcCHHHHHHHHHHCC------HHHHHHHHcCCC
Confidence 33445788899998877643 1 1125566 89999999998886421 122333333333
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccH-HHHHhcCCCCHHHHHHHHHHHHHHH
Q 000167 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTP-TLVKSLESPDWKVRLESIEAVNKIL 881 (1972)
Q Consensus 803 p~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~-~ll~~l~d~~Wk~R~eale~l~~ll 881 (1972)
+......-.. ++. .+...+.|.+|.+|..+...+
T Consensus 112 ~~VR~~aA~~-----------------------------------------l~~~~L~~L~~D~d~~VR~~aA~~l---- 146 (244)
T 1lrv_A 112 REVRITVADR-----------------------------------------LPLEQLEQMAADRDYLVRAYVVQRI---- 146 (244)
T ss_dssp HHHHHHHHHH-----------------------------------------SCTGGGGGGTTCSSHHHHHHHHHHS----
T ss_pred HHHHHHHHHh-----------------------------------------CCHHHHHHHHcCCCHHHHHHHHHhc----
Confidence 3332222221 011 122346788899998877631
Q ss_pred HHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000167 882 EEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961 (1972)
Q Consensus 882 ~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~ 961 (1972)
. .+ .|...++|.+..|+..++.. ++. +.+...++|....||.++...+
T Consensus 147 -------~----~~---~l~~l~~D~d~~VR~~aa~~-------l~~----------~ll~~ll~D~d~~VR~aaa~~l- 194 (244)
T 1lrv_A 147 -------P----PG---RLFRFMRDEDRQVRKLVAKR-------LPE----------ESLGLMTQDPEPEVRRIVASRL- 194 (244)
T ss_dssp -------C----GG---GGGGTTTCSCHHHHHHHHHH-------SCG----------GGGGGSTTCSSHHHHHHHHHHC-
T ss_pred -------C----HH---HHHHHHcCCCHHHHHHHHHc-------CCH----------HHHHHHHcCCCHHHHHHHHHhC-
Confidence 1 11 23455688888888876553 221 2233566899999998887652
Q ss_pred HHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000167 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (1972)
Q Consensus 962 ~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l 1036 (1972)
+. +.+...+.++ +|++|..+...+. .+.+..|.|.++.||.+|.+.|
T Consensus 195 ------~~----~~L~~Ll~D~--d~~VR~~aa~~l~----------------~~~L~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 ------RG----DDLLELLHDP--DWTVRLAAVEHAS----------------LEALRELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp ------CG----GGGGGGGGCS--SHHHHHHHHHHSC----------------HHHHHHCCCCCHHHHHHHHCCC
T ss_pred ------CH----HHHHHHHcCC--CHHHHHHHHHcCC----------------HHHHHHccCCCHHHHHHHHHHh
Confidence 32 2344446666 6889988877642 1333445999999999887654
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=92.41 E-value=1.2 Score=46.98 Aligned_cols=111 Identities=14% Similarity=0.229 Sum_probs=81.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||.. .-.|..++... +....+.+.+|+++|+..|.+++..||.++..++...|..|...+ +.|+.
T Consensus 14 l~~~dw~~----~leicD~I~~~-----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (148)
T 1mhq_A 14 MSEQDWSA----IQNFCEQVNTD-----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (148)
T ss_dssp CSSCCHHH----HHHHHHHHHHS-----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 45678974 33455555431 222478999999999999999999999999999999999996543 56888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000167 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1972)
Q Consensus 940 ~ll~~L~D------~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~ 981 (1972)
.+.+.+.+ ....|++-+...+..|....+-..-+..+...|+
T Consensus 85 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (148)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 88877764 3678999999999999988753222333334443
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=92.35 E-value=0.91 Score=48.74 Aligned_cols=98 Identities=12% Similarity=0.296 Sum_probs=74.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||..=. +|..++.. .+....+.+.+|+++|+..|.+++..||.++..+++..|..|...+ +.|+.
T Consensus 28 ~~~~Dw~~~l----eicD~I~~-----~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~ 98 (163)
T 1x5b_A 28 NTTEDWSLIM----DICDKVGS-----TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFAT 98 (163)
T ss_dssp CSSCCHHHHH----HHHHHHHH-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHH
T ss_pred CCCcCHHHHH----HHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 3456898533 35555542 1223478999999999999999999999999999999999987433 34666
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+...+.. ..+.|++-+...+..|....+
T Consensus 99 el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 99 EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 66665554 557899999999999999875
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=92.13 E-value=23 Score=49.17 Aligned_cols=175 Identities=13% Similarity=0.094 Sum_probs=119.2
Q ss_pred HHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhchh-hhhhhHHHHHHHHhccC-----cHHHHHHHHHHHHH---HH
Q 000167 326 VCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLKEK-----KPTVAESLTQTLQA---MH 394 (1972)
Q Consensus 326 l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klkdk-----k~~V~~aa~~aL~a---l~ 394 (1972)
++..|.+.+. ..+-.....+|=++|.++..+....+ ++...+++.|+..+..+ |+.++....=.+.. |.
T Consensus 478 ~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl 557 (1073)
T 3gjx_A 478 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL 557 (1073)
T ss_dssp HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence 4455555555 33466778889999999977776544 78889999998776333 55555443323322 32
Q ss_pred HhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH-------HHHhhhhHHHHHHHHhcCCChHHHHHHHH
Q 000167 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA-------VLKVHKDYVPICMECLNDGTPEVRDAAFS 467 (1972)
Q Consensus 395 ~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~-------l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~ 467 (1972)
.....-+..++..|+..+.+.++.|...++..+..+.+.|...- ..+++..++..+..+..+=.++-.-.-.+
T Consensus 558 ~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lye 637 (1073)
T 3gjx_A 558 RAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYE 637 (1073)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 22112366788888899999999999999999988888776542 12466777777778888888888888899
Q ss_pred HHHHHHHHhCchh-HHHhHhhccHHHHHHHHHHH
Q 000167 468 VLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMI 500 (1972)
Q Consensus 468 ~l~~l~~~~ge~~-~~~~l~~Ld~~~~kkI~e~~ 500 (1972)
+++.+....|... ...++..|=+.--.+..+.+
T Consensus 638 av~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~ 671 (1073)
T 3gjx_A 638 AVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSII 671 (1073)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998654 35566655443334444444
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=1.7 Score=45.90 Aligned_cols=98 Identities=15% Similarity=0.255 Sum_probs=76.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (1972)
+.+.||.. +-+|..++.. .+....+.+.+|++||+..|.+++..||.++..+++..|..|... .+.|+.
T Consensus 24 l~~~dw~~----ileicD~I~~-----~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 24 NKELDWAS----INGFCEQLNE-----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CSSCCHHH----HHHHHHHGGG-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHC-----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 45568983 3334444432 223347899999999999999999999999999999999998643 456888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D------~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+.+.+.+ ....|++-+...+..|....+
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 88888865 457899999999999999875
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=91.67 E-value=0.7 Score=48.31 Aligned_cols=98 Identities=16% Similarity=0.305 Sum_probs=75.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||.. +-+|..++.. .+..-.+.+.+|+++|+..|.++...||.++..+++..|..|...+ +.|+.
T Consensus 18 l~~~dw~~----ileicD~I~~-----~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 18 NTAEDWGL----ILDICDKVGQ-----SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSSCCHHH----HHHHHHHHTT-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHC-----CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 45678984 3334444431 2223478999999999999999999999999999999999987543 55666
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+...+....+.|++-+...+..|.....
T Consensus 89 el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 89 EVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 66666655778899999999999998765
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=9.7 Score=46.34 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCc
Q 000167 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1972)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (1972)
.+|.+.|.+++.|+-+. .+.-|.++++.+.....|.+..|+...+..|++.+.. + ..++..+++.|...+.|..
T Consensus 40 ~~Kl~~L~q~~EL~l~~--dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK--DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRDEN 113 (386)
T ss_dssp THHHHHHHHHHHHHHTT--CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 58999999999975221 2345667788887777799999999999999888753 2 2457888889999999999
Q ss_pred HHHHHHHHHHHHHHHHh------cCCC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000167 380 PTVAESLTQTLQAMHKA------GCLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1972)
Q Consensus 380 ~~V~~aa~~aL~al~~~------~~~~-----------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~ 432 (1972)
+.|...+..|...++.. .+.. +..+-..|+..+++.|..+|..|+.|+.+++.
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 99988888888777743 0111 12344566677788999999999999999885
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=0.61 Score=49.20 Aligned_cols=77 Identities=12% Similarity=0.162 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCc---cChhHHHHhhhhhhcC------CChhHHHHHHHHHHHH
Q 000167 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLEL 195 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~---~~~k~il~~l~~ll~~------~d~~VR~~a~~l~~el 195 (1972)
.+..++..|.+.+.|+||+++.-+|..|-.++++=|... |.-+.|+..|.+++.. .+..||+....++.+-
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 466788889999999999999999999999999888632 4457899999999964 6899999999988877
Q ss_pred HHhhCC
Q 000167 196 CRWIGK 201 (1972)
Q Consensus 196 y~~lG~ 201 (1972)
+...+.
T Consensus 125 ~~~f~~ 130 (149)
T 3g2s_A 125 TVGLPE 130 (149)
T ss_dssp HHHCTT
T ss_pred HHHhCC
Confidence 766654
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=89.93 E-value=75 Score=43.74 Aligned_cols=423 Identities=16% Similarity=0.109 Sum_probs=218.2
Q ss_pred CChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcCh----hhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHH
Q 000167 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP----AVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLA 965 (1972)
Q Consensus 891 ~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~----~~~~~~~~llp~ll~~L~-D~k~~Vr~Aa~~aL~~i~~ 965 (1972)
..+.++...+...+.|+.+.-...|.++++.|..+... ..+..-.-+.|.+-+.+. +-.+.....=..|+..+..
T Consensus 504 ~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~ 583 (997)
T 1vsy_5 504 LNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPA 583 (997)
T ss_dssp CCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhc
Confidence 33567777777777888888888888988888765432 233444556677777777 4555555555556666666
Q ss_pred hcCchhhHHHHHHHHhc----------CCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHH
Q 000167 966 AVHLDKMVPYVTTALTD----------AKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1972)
Q Consensus 966 ~~~l~~ll~~l~~~L~~----------~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~ 1035 (1972)
...+.++- .|.+.|.+ ..+....|..++..+...+. +. .++...++..+. ++.....||++....
T Consensus 584 ~~DprR~~-~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~-wr-~~~~~~~l~~~~--l~h~y~~VRe~Ig~~ 658 (997)
T 1vsy_5 584 VVDLRRSK-TFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSME-FR-APDVGKLFDELV--FDHPYDQVRQAVAKL 658 (997)
T ss_dssp HSCGGGCH-HHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHT-TS-SCCCHHHHHHCC--SCCSCHHHHHHHHHH
T ss_pred CCChhhhH-HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhc-cc-cccHHHHHHHHH--hCCChHHHHHHHHHH
Confidence 66655543 34443310 11112246666666544443 22 223445555444 888999999999999
Q ss_pred HHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCcCCCCCCC
Q 000167 1036 IVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGN----RAISSRVIPTK 1111 (1972)
Q Consensus 1036 l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~ 1111 (1972)
|..+...--. .... .....++...++.+... .+.. ..+........ +-..-+... .
T Consensus 659 L~~i~~~~~~-------~~~~-~~~~~l~~~~~~~~~~~---~~~~--------~~~~~~~~~i~~~f~~l~~~~~~~-~ 718 (997)
T 1vsy_5 659 LTTLVQNQSN-------PSIS-DPTTLLEAERNDPDGLG---LPLK--------SVPEKVDAYIKKQFEIIKNLEDSV-V 718 (997)
T ss_dssp HHHHHHTSCC-------CCBS-CHHHHHHHHHSCSSSSC---CCSS--------CCCHHHHHHHHHHHHHHTGGGGTT-S
T ss_pred HHHHHHhhcc-------cCCC-CHHHHHHhhcccccccc---Cccc--------cCcchHHHHHHHHHHHHHHhhhcc-c
Confidence 8877765410 1111 11122222111100000 0000 00000000000 000000000 0
Q ss_pred CCCCCcccccchhhhhhhhccccCCCChHHhhhhhcccccccCCChhhHHHHHHHHHHhhhHHHHHhhcC-ccHHH--HH
Q 000167 1112 GARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLS-TDFKK--QV 1188 (1972)
Q Consensus 1112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~-~d~k~--~~ 1188 (1972)
.-.+ +.. ...+..+.-.-+++|-...-..-.. .++.++++.-++-.+++ .+.++ .+
T Consensus 719 ~~~~-------------~~~----~~s~y~~~~kTvl~wl~~~l~~~~~----~~l~~~~~~~llP~ll~l~~~~d~~eL 777 (997)
T 1vsy_5 719 GLNP-------------QQF----IKTDYFYRTSTIFYWIKEMARGPNK----VLLVPYLVDYVLPFLIGLVKHKDVCAL 777 (997)
T ss_dssp SCCS-------------TTT----TTSHHHHHHHHHHHHHHHHSSGGGH----HHHHHHHTTTTTTTTCTTSSCSHHHHH
T ss_pred ccCc-------------ccc----chHHHHHHHHHHHHHHHHHhcCCCc----cchhhhhHHHHHHHHHHHhhcCcHHHH
Confidence 0000 000 0001111111123443322111110 11222222223333333 11111 12
Q ss_pred HHH--HHHHHhcCcchhhHHHHHHHHHHHHHHhhc-CcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhh
Q 000167 1189 DGL--EMLQKALPSIRKDIIEVLDILLRWFVLQFC-KSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1265 (1972)
Q Consensus 1189 ~al--~~L~~~l~~~~~~~i~~lDlllk~~~lr~~-dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~ 1265 (1972)
+.+ ..+-..+....- .-..+|.++.-+.--.. ++|. +=..+|.|++.++= .+-+.|++.+-..++-.++.-+
T Consensus 778 ~~~~a~~~l~~ls~~~~-~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f---~n~f~l~~~~~~~i~~~v~~~L 852 (997)
T 1vsy_5 778 ASLDPVRLYAGLGYMPI-RKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLS---AELLQLTEEEKNKILEFVVSNL 852 (997)
T ss_dssp TTCCSHHHHHHTSSSCC-CHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHH---HHTTTSCTTHHHHTHHHHTTTT
T ss_pred HhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHH---HHHHHcCHHHHHHHHHHHHHHh
Confidence 211 111222222110 01224445544422122 4566 77788888876543 4457788888888888888889
Q ss_pred CCCh-HHHHHHHHHHHHHHhhcC-CccccHHHH---Hhhh-c-----------CCChhhHHHHHHHHHHHHHhhCCCccc
Q 000167 1266 GHNI-EKVREKMRELTKQIVNFY-SATKTLPYI---LEGL-R-----------SKNNRTRIECVDLVGFLIDHHGAEISG 1328 (1972)
Q Consensus 1266 Gd~k-~~vr~~v~~il~~~~~v~-~~skvf~~l---~~gl-~-----------sKN~r~R~ecl~~l~~li~~~G~~~~~ 1328 (1972)
+|+. -.||+....+|-.+.... +...+-.++ .+.+ + +|+-++|-.++--|+.+|..|...++-
T Consensus 853 ~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~ 932 (997)
T 1vsy_5 853 YNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPL 932 (997)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSC
T ss_pred cCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 9999 999999999998887766 533333332 2233 2 233368899999999999999998743
Q ss_pred c---cchHHHHHhhhcCCchHHHHHHHHHHHHHHHHhCHH
Q 000167 1329 Q---LKSLQIVASLTAERDGEIRKAALNTLATGYKILGED 1365 (1972)
Q Consensus 1329 ~---~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~ 1365 (1972)
| +..|..+|.+..|..+ |++.+-.||.+=.+-.-|.
T Consensus 933 P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~ 971 (997)
T 1vsy_5 933 PPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADT 971 (997)
T ss_dssp CTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTT
T ss_pred CcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchh
Confidence 3 3567899999999665 9999999999866655443
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=89.83 E-value=2.1 Score=46.21 Aligned_cols=110 Identities=14% Similarity=0.221 Sum_probs=81.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHHH
Q 000167 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSD 940 (1972)
Q Consensus 863 ~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp~ 940 (1972)
.+.||.. +-+|..++... +....+.+.+|+++|+..|.+++..||.++..+++..|..|... .+.|+..
T Consensus 27 ~~~Dw~~----ileicD~I~~~-----~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~e 97 (171)
T 1juq_A 27 RQEDWEY----IIGFCDQINKE-----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE 97 (171)
T ss_dssp SSCCHHH----HHHHHHHHHHS-----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred CCcCHHH----HHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 4568974 33455555431 22347899999999999999999999999999999999998753 3457778
Q ss_pred HHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000167 941 ILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1972)
Q Consensus 941 ll~~L~D------~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~ 981 (1972)
++..+.. ....|++-+...+..|....+-..-+..+...|+
T Consensus 98 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 98 LIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 8877763 3578999999999999998764333333444443
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.15 E-value=28 Score=40.00 Aligned_cols=151 Identities=12% Similarity=0.092 Sum_probs=105.3
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh
Q 000167 857 TLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1972)
Q Consensus 857 ~ll~~l~d-~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (1972)
+++..... .+ .+|.+.|.++++++-.. .|..|.++++.+.....|.+..|+......|.+.+.. -..++.
T Consensus 19 ~lln~A~~~~~-~~kl~~L~qa~el~~~~----dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~----k~~l~~ 89 (257)
T 3gs3_A 19 DWCNELVIASP-STKCELLAKVQETVLGS----CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----KVELLP 89 (257)
T ss_dssp HHHHHHTTCCH-HHHHHHHHHHHHHHTTT----TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHH
T ss_pred HHHHHhhhcCc-HHHHHHHHHHHHHHHcc----CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 45544433 34 68999999999977532 3456788888888877899999999998888888733 235778
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-cCCCChhHHHHHHHHHHHHhccCCCCCChhhhH
Q 000167 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014 (1972)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~-~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll 1014 (1972)
.+++.+...+.|..+.|...++.|...++. .++..+. ++. .+..-..+|.|+.. +
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~---------~~l~~i~~~~~-~~~~~~~~W~~m~~--------------l 145 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGSIYK---------NGLQYLCSLME-PGDSAEQAWNILSL--------------I 145 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH---------HHHHHHTTSSS-CCHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---------HHHHHHhcCCC-CcchHHHHHHHHHH--------------H
Confidence 888999999999999999998888877654 3344433 332 22234678888764 2
Q ss_pred HH-HHhhcCCCCHHHHHHHHHHHHHHH
Q 000167 1015 KP-ASIAMTDKSSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 1015 ~p-l~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1972)
+- ++..+...+..||-.+.+.+..++
T Consensus 146 K~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 146 KAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 22 444566778889988877665544
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=88.10 E-value=1.2 Score=46.59 Aligned_cols=77 Identities=12% Similarity=0.158 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC---ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCC
Q 000167 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 201 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~---~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~ 201 (1972)
++..++..|.+.+.|+||.++.-+|..|-.++++=|.. .+.-+.|+..+.+++...++.||+....++.+-+...+.
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 46677888889999999999999999999999987763 234477898899999889999999999998877766654
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=87.63 E-value=0.91 Score=49.12 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=63.3
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC---ccChhHHHHhhhhhhc------CCChhHHHHHHHHHHHH
Q 000167 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFD------HQDQNVRASSKGLTLEL 195 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~---~~~~k~il~~l~~ll~------~~d~~VR~~a~~l~~el 195 (1972)
++..++..|.+.+.|+||+++.-+|..|-.++++=|.. .|.-+.|+..|.+++. ..+..||+.+..++.+-
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999986652 2344789999999986 35789999999998887
Q ss_pred HHhhCC
Q 000167 196 CRWIGK 201 (1972)
Q Consensus 196 y~~lG~ 201 (1972)
+...+.
T Consensus 127 ~~~f~~ 132 (171)
T 1juq_A 127 TMALPE 132 (171)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 777654
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=86.51 E-value=1.9 Score=45.40 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=62.9
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCc---cChhHHHHhhhhhhcC------CChhHHHHHHHHHHHH
Q 000167 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLEL 195 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~---~~~k~il~~l~~ll~~------~d~~VR~~a~~l~~el 195 (1972)
++..++..|.+.+.|+||+++.-+|..|-.++++=|... +.=+.|+..|.+++.. .+..||+....++.+-
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 466778888899999999999999999999999977632 3447899999999874 5889999988887776
Q ss_pred HHhhCC
Q 000167 196 CRWIGK 201 (1972)
Q Consensus 196 y~~lG~ 201 (1972)
+...+.
T Consensus 115 ~~~f~~ 120 (148)
T 1mhq_A 115 TVWFPE 120 (148)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 666543
|
| >1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=86.40 E-value=3.7 Score=43.72 Aligned_cols=98 Identities=17% Similarity=0.379 Sum_probs=73.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~-DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~ll 938 (1972)
+.+.||..=. +|..++.. .+....+.+.+|+++|+ ..|.+++..||.++..+++..|..|...+ +.|+
T Consensus 29 l~~~Dw~~~l----eicD~I~~-----~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl 99 (157)
T 1elk_A 29 LQSEDWALNM----EICDIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 99 (157)
T ss_dssp CSSCCHHHHH----HHHHHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCcCHHHHH----HHHHHHhC-----CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHH
Confidence 3456898533 34455542 12234889999999997 68999999999999999999999997633 3477
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcC
Q 000167 939 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 939 p~-ll~~L~D---~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.. +++.+.. ....|++-+...+..|....+
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 76 5666643 345799999999999998875
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=86.36 E-value=20 Score=43.60 Aligned_cols=142 Identities=8% Similarity=0.091 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCC
Q 000167 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947 (1972)
Q Consensus 868 k~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D 947 (1972)
.++.+.|..+++++-.. .|..+.+++..+...-.|.+..|+...+.+|.+.+.. -..++..+++.+...|.|
T Consensus 40 ~~Kl~~L~q~~EL~l~~----dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d 111 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK----DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRD 111 (386)
T ss_dssp THHHHHHHHHHHHHHTT----CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcC
Confidence 47999999999987532 4456788888888888899999999999999888753 234567888888889999
Q ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-cCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCH
Q 000167 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSS 1026 (1972)
Q Consensus 948 ~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~-~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~ 1026 (1972)
..+.|...++.|...++ |.++..+. ++. ....-..+|.|+... +. -++..+...+.
T Consensus 112 ~d~~V~K~~I~~~tslY---------pl~f~~i~~~~~-~~~~~e~~W~~m~~l----------K~---~Il~~~ds~n~ 168 (386)
T 3o2t_A 112 ENVNVVKKAILTMTQLY---------KVALQWMVKSRV-ISELQEACWDMVSAM----------AG---DIILLLDSDND 168 (386)
T ss_dssp SSHHHHHHHHHHHHHHH---------HHHHHHHHHC-C-CCHHHHHHHHHHHHH----------HH---HHHHGGGCSSH
T ss_pred CCHHHHHHHHHHHHHHH---------HHHHHHHhcCCC-cchhHHHHHHHHHHH----------HH---HHHHHhccCCc
Confidence 99999999888887764 33333433 331 223346788888642 11 14444666788
Q ss_pred HHHHHHHHHHHHHH
Q 000167 1027 DVRKAAEACIVEIL 1040 (1972)
Q Consensus 1027 dVR~aA~~~l~~l~ 1040 (1972)
.||-.+.+.+..++
T Consensus 169 GVrl~aiKFle~VI 182 (386)
T 3o2t_A 169 GIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 89988877665544
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=86.24 E-value=4.8 Score=43.11 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=60.2
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHh
Q 000167 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND-GTPEVRDAAFSVLAAIAKSV 476 (1972)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~D-s~~~VR~aA~~~l~~l~~~~ 476 (1972)
.+..+.+..|..-++++||.+...+|..|..|+.+|++..-..+ -+.++..+++.+.. .++.||+...+.+......+
T Consensus 48 ~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 48 NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 34455556666678899999999999999999999986532111 14455556666654 77899999999998888888
Q ss_pred Cch
Q 000167 477 GMR 479 (1972)
Q Consensus 477 ge~ 479 (1972)
+..
T Consensus 128 ~~~ 130 (163)
T 1x5b_A 128 QKD 130 (163)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=85.61 E-value=6.2 Score=44.64 Aligned_cols=98 Identities=16% Similarity=0.328 Sum_probs=70.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (1972)
+.+.||..= -+|-.++.. .+..-.+.+.+|+++|+..|.+++..||.++..+++..|..|... .+.|+.
T Consensus 21 ~~~~dw~~i----leicD~I~~-----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 21 LLETDWESI----LQICDLIRQ-----GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp CSSCCHHHH----HHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred CCCcCHHHH----HHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 345689843 335555542 122248899999999999999999999999999999999987643 234554
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+.+.++. ....|++-+...+..|.....
T Consensus 92 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 92 ELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 44444432 446789999899989887764
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=83.52 E-value=7.1 Score=44.02 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=104.4
Q ss_pred hhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHhcCchhh
Q 000167 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK-CLGDNKKHMRECTLTVLDAWLAAVHLDKM 972 (1972)
Q Consensus 894 ~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~-~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~l 972 (1972)
.+++........|..-.|+..|+.+|+.+ . ....+++.+.. .-.|..=.||+.+..++..++...+++..
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~ 140 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKA 140 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHH
Confidence 55666555666666678888898877765 1 23556777776 55677778999999999999987788888
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHH
Q 000167 973 VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPAS-IAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (1972)
Q Consensus 973 l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~-~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~ 1051 (1972)
++.+..-+.++ |+.+|..+...+.. +...+........+.|++ ....|++.-||++..-.|..+.+.-+ +.+..+
T Consensus 141 l~~~~~W~~d~--n~~VRR~Ase~~rp-W~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P-d~V~~~ 216 (240)
T 3l9t_A 141 LPIIDEWLKSS--NLHTRRAATEGLRI-WTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP-DLVKIE 216 (240)
T ss_dssp HHHHHHHHHCS--SHHHHHHHHHHTCS-GGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHhhHH-HhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH-HHHHHH
Confidence 88888888877 68899888877643 222222222344555644 46699999999999999888766543 455666
Q ss_pred hcc
Q 000167 1052 LKD 1054 (1972)
Q Consensus 1052 l~~ 1054 (1972)
+..
T Consensus 217 ~~~ 219 (240)
T 3l9t_A 217 LKN 219 (240)
T ss_dssp HHT
T ss_pred HHH
Confidence 644
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.49 E-value=10 Score=43.05 Aligned_cols=144 Identities=9% Similarity=-0.028 Sum_probs=95.0
Q ss_pred HHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhchhh-hhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh--
Q 000167 327 CRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-- 401 (1972)
Q Consensus 327 ~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l-- 401 (1972)
++.|.+.+. |....+...|+.++..|+.+-...-.. .-...+|.|+..++.....+++.+..||..+... +..-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~-~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE-DNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHH
Confidence 344555666 433378888888999988653221111 1224679999999999999999999999998752 1000
Q ss_pred ----HhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHHHHh-------cC---------CCh
Q 000167 402 ----VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICMECL-------ND---------GTP 459 (1972)
Q Consensus 402 ----~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~k~l-------~D---------s~~ 459 (1972)
...+|.|...|. ++++.++..+...|..+-.... +.. ..+.-+|.|+..+ .| .++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~---i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL---MITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH---HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH---HHhccHHHHHHHHhccccCCcccccccccccchH
Confidence 125677888887 5789999998877766533221 222 2334566666543 12 367
Q ss_pred HHHHHHHHHHHHHHH
Q 000167 460 EVRDAAFSVLAAIAK 474 (1972)
Q Consensus 460 ~VR~aA~~~l~~l~~ 474 (1972)
+|+..|..||..+..
T Consensus 166 ~v~~na~~~L~nLss 180 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987754
|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 | Back alignment and structure |
|---|
Probab=83.30 E-value=4.6 Score=45.47 Aligned_cols=98 Identities=16% Similarity=0.311 Sum_probs=71.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||..-.+ |-+++.. .+....+.+.+|+++|+..|.+++..||.++..++...|..|...+ +.|+.
T Consensus 18 ~~~~dw~~~le----icd~i~~-----~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~ 88 (220)
T 1dvp_A 18 RLEPDWPSILL----ICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (220)
T ss_dssp CSSCCHHHHHH----HHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCcCHHHHHH----HHHhhcC-----CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHH
Confidence 34578985433 5555542 1223489999999999999999999999999999999999886432 33555
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+...+++ ....|++.+...+..|.....
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 89 MFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 55554443 446799999999999987754
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=81.74 E-value=7.1 Score=48.30 Aligned_cols=129 Identities=14% Similarity=0.177 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH
Q 000167 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV 402 (1972)
Q Consensus 323 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~ 402 (1972)
-.+.+.++..++.|..+.|+..|++-|-.+|+. .++.-+.-.|...+..-.+.-.+.+..+|..++.. ...
T Consensus 63 ~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~---Dpk 133 (507)
T 3u0r_A 63 ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM---DAK 133 (507)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc---ChH
Confidence 346778888889999999999999999888876 34667777777778777888899999999999985 334
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCCChH
Q 000167 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPE 460 (1972)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~ 460 (1972)
..+..++..+.+....+|..++.||..-+...++..+.+-+ .-++..+.+.|.|-..+
T Consensus 134 ~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~ 192 (507)
T 3u0r_A 134 GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGE 192 (507)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHH
Confidence 44555554444457899999999999888776665444322 33666777888766553
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=80.78 E-value=11 Score=42.38 Aligned_cols=150 Identities=12% Similarity=0.061 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH-HhccCcHHHHHHHHHHHHHHHHhcCCCh
Q 000167 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE-KLKEKKPTVAESLTQTLQAMHKAGCLNL 401 (1972)
Q Consensus 323 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~-klkdkk~~V~~aa~~aL~al~~~~~~~l 401 (1972)
..+++.....+..|..-.|+..|+.+|+.+ . ....+++.|-. -..|+.=.|++.+..++..++.. ..+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~--~~p 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKK--IEY 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHh--cCH
Confidence 456666666777766678999999977766 2 23567777776 45788889999999999998863 345
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhH
Q 000167 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1972)
Q Consensus 402 ~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~ 481 (1972)
+.+++.+..=+++.|+.||+.+...+.- ....+ .+......++|.|....+|+..-||++-.-.|.-+.+.-++- +
T Consensus 138 e~~l~~~~~W~~d~n~~VRR~Ase~~rp-W~~~~--~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~-V 213 (240)
T 3l9t_A 138 KKALPIIDEWLKSSNLHTRRAATEGLRI-WTNRP--YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL-V 213 (240)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHTCS-GGGST--TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH-H
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhHH-Hhccc--hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH-H
Confidence 6677777777889999999988776542 11111 112233668899999999999999999999998888877764 4
Q ss_pred HHhHhh
Q 000167 482 ERSIEK 487 (1972)
Q Consensus 482 ~~~l~~ 487 (1972)
..++..
T Consensus 214 ~~~~~~ 219 (240)
T 3l9t_A 214 KIELKN 219 (240)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 455553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1972 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-15 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 8e-14 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-09 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-07 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 1e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 8e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.001 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 4e-05 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 4e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 0.001 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.2 bits (196), Expect = 2e-15
Identities = 153/1079 (14%), Positives = 314/1079 (29%), Gaps = 102/1079 (9%)
Query: 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 381
+V + + KL+ D N V A++ +G L ++ + ++ L + K
Sbjct: 42 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQ 98
Query: 382 VAESLTQTLQAM------HKAGCLNLVDVVEDV-----KTSVKNKVPLVRSLTLNWVTFC 430
+ + + L+ + +G +V + + K + V+ L+ +
Sbjct: 99 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 158
Query: 431 IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ ++ H + + L VR L + S G IE L
Sbjct: 159 LSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLS 217
Query: 491 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550
S + S G + + F +
Sbjct: 218 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 277
Query: 551 APASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVG 608
+ + V P + K T +D + E +++ D
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 609 QLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
WK R A L V + L + + + + E+NV+ +V
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKA-----DVF 392
Query: 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
+ + + LC E+ T + I + L+K MK
Sbjct: 393 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ--SQVPN---------IVKALHKQMK 441
Query: 728 DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGL--QSSAAATRNATIKLLGA 785
+ K+ K + V + + ++ L +SS++ + + L
Sbjct: 442 E-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 500
Query: 786 LHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 501 ILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 560
Query: 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
+ +K L++ D E E + + + +L L+ L
Sbjct: 561 YIK-----DLFTCTIKRLKAADI--DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL 613
Query: 905 -YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLDA 962
N+ + T+ L +A + + G IL N++ ++ TL+ LD
Sbjct: 614 ERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDI 673
Query: 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT 1022
+ + D + +L L D S +T
Sbjct: 674 LIKNYSDSLT------------------AAMIDAVLDELPPLISESDMHVSQMAISF-LT 714
Query: 1023 DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSK 1082
+ + IL L+ A+ + + + G + + +
Sbjct: 715 TLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR 774
Query: 1083 SSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDR 1142
+ S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 775 MLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTDS 830
Query: 1143 ERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR 1202
R+ + + E+ + + + +L +L E ++
Sbjct: 831 IRL---------LALLSLGEVGHHIDLSGQLELKSVIL-----------EAFSSPSEEVK 870
Query: 1203 KDIIEVLDILLRW-------FVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAA 1255
L + FVLQ S +L L E+ + G +
Sbjct: 871 SAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG---LKPYVE 927
Query: 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLV 1315
L++ E R + E ++ T LP + L S ++ R V V
Sbjct: 928 NIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAV 986
Query: 1316 GFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
F I H I LK+ + D +R+ AL T + I + +
Sbjct: 987 KFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (182), Expect = 8e-14
Identities = 135/1055 (12%), Positives = 295/1055 (27%), Gaps = 111/1055 (10%)
Query: 18 DRLLHKNWKVRNEANIDL-AALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
+++ + R A DL L D+ R++ + K + D N VQ+ A+ L
Sbjct: 10 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 69
Query: 77 IA-YLKAADADAGRYAKEVCDA----------IAAKCLTGRPKTVEKAQAVFMLWVELEA 125
K + +C I++ L + A + L +
Sbjct: 70 GPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-- 127
Query: 126 VDVFLDVMEKAIKNKVAKAV-VPAIDVMFQALSEFGAKIIPP-KRILKMLPELFDHQDQN 183
+ AI + +V + A+D+M LS G ++ IL L
Sbjct: 128 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLA 187
Query: 184 VRASSKGLTLELCRWIGKDPVKTILFEKMRD-TMKKELEVELVNVSGTARPTRKIRAEQD 242
VR + L G ++ + + + + + A +R+
Sbjct: 188 VRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG 247
Query: 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSER 302
+ L + + ++ + + E + + P + +K +
Sbjct: 248 EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 307
Query: 303 KDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362
+ E + D + D++ V A + + +
Sbjct: 308 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 367
Query: 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL----------------------- 399
+ + P L+ + KE++ V + ++ K
Sbjct: 368 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 427
Query: 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459
+ ++V+ + +K K R N +T + A+ + VP + LND +
Sbjct: 428 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSS 486
Query: 460 --EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517
++ A S L I + + ++ L + + + A + V+
Sbjct: 487 SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE-ALLVTQQLVK 545
Query: 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKL 577
+ +++ + + K+ G S L
Sbjct: 546 VIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 605
Query: 578 T----------EAPEDVEPSEMSLEEIESRLGSLIPADTVGQL--------KSAVWKERL 619
+ + +L I + +G+ + +L
Sbjct: 606 PNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKL 665
Query: 620 EAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679
+S+L ++ + + I L + P SE ++ V Q I + LA
Sbjct: 666 GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 725
Query: 680 KCVVLCLLGISERVADIKTRAHAMKCLTTF--------SEAVGPGFIFERLYKIMKDHKN 731
K L + V + A+ + F + +G + L +
Sbjct: 726 KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 785
Query: 732 PKVLSEGILWMVSAVEDFG--VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
+ + V + F +D S + R + LG +
Sbjct: 786 ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHH 845
Query: 790 VGPDIKGFLADVKPALLSALDAEYEK------------NPFEGTVVPKKTVRASESTSSV 837
+ ++K +L A + E+ + ++ S
Sbjct: 846 IDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKR 902
Query: 838 SSGGSDGLPR----------EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
L + L+K E + R E + K+ +
Sbjct: 903 QYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET 962
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
+ P L+G L + + + + S ++ K + D LK L D
Sbjct: 963 LLPR--------LKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1014
Query: 948 NKKHMRECTLTVLDA------WLAAVHLDKMVPYV 976
++R L ++ L LD ++P++
Sbjct: 1015 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 2e-11
Identities = 107/978 (10%), Positives = 275/978 (28%), Gaps = 80/978 (8%)
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917
L++ + S D R + + L++ + ++ ++ + L D N + +
Sbjct: 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67
Query: 918 TLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL------------DAWLA 965
LG + S + E + ++ + + +K+ +R+ + L + LA
Sbjct: 68 CLGPLVSKVK---EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 966 AVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTD 1023
A K+ +T+A+ + + + D ++ L+ G +L +T
Sbjct: 125 ANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083
VRK + ++ + G ++ +L + N + + +
Sbjct: 184 PRLAVRKRTIIALGHLVMSCGNIVFVDLIEH--------LLSELSKNDSMSTTRT-YIQC 234
Query: 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1143
+ + + A + + ++ + I V +V D ++ + E
Sbjct: 235 IAAISRQAGHRIGEYLEKIIPLVV---------KFCNVDDDELREYCIQAF--------E 277
Query: 1144 RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRK 1203
V R K P + I + + Y + + DG + +
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 1204 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVE 1263
D ++ + R +T + EF + L E+ A +
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 397
Query: 1264 KSGHNIEKVREKMRELTKQIVNFYSA------TKTLPYILEGLRSKNNRTRIECVDLVGF 1317
+ + + + ++ K+ +TR C +++
Sbjct: 398 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTE 457
Query: 1318 LI---DHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
L+ + L I + ++ AL+ L ++ +
Sbjct: 458 LVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL 517
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
+K+ + + L + + + + +
Sbjct: 518 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAAD 577
Query: 1435 MRRNYGHSELHVERS---------------IMPRALASVSGPTDWNEAL----DIISFGS 1475
+ + + + L + + I
Sbjct: 578 IDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPL 637
Query: 1476 PEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRS 1535
+ LA + ++ + D L+ ++ + ++
Sbjct: 638 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL 697
Query: 1536 CKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLML 1595
+ Q + A + S I+ +L L V L A+
Sbjct: 698 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQ 757
Query: 1596 KILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQS 1655
++ ++ L+ +L S+ + +S+ + + + L C + V+
Sbjct: 758 ALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ 817
Query: 1656 TIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLR--MVKTVLHELVKLRGAAIKGH 1713
I DV R SI + E + L+ +++ +++ AA
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 877
Query: 1714 LSMVPIDMKPQ-PIILAYIDLNLETLAAARM-----LTSTGPGGQTHWGDSAANNPTSAT 1767
S+ ++ P +L I + ++S G + ++
Sbjct: 878 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 937
Query: 1768 NSADAQLKQELAAIFKKI 1785
A+ + +A K+
Sbjct: 938 ECAEEGTRNVVAECLGKL 955
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.9 bits (159), Expect = 4e-11
Identities = 117/1057 (11%), Positives = 273/1057 (25%), Gaps = 126/1057 (11%)
Query: 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRI-------RELGPLFKKTVADSNAPVQD 70
+L ++R+ ++I L + + + G L + VQ
Sbjct: 90 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQL 149
Query: 71 KALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFL 130
+ALD + L + + + + + R ++ V VF+
Sbjct: 150 EALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV 209
Query: 131 DVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP-----KRILKMLPELFDHQDQNVR 185
D++E + + Q ++ + ++I+ ++ + + D +R
Sbjct: 210 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 269
Query: 186 ASSKGLTLELCR-------------------------WIGKDPVKTILFEKMRDTMKKEL 220
R D D +
Sbjct: 270 EYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD 329
Query: 221 EVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 280
+ S + K+R K L + + ++ + + +
Sbjct: 330 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSP----ALISRFKEREE 385
Query: 281 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF-TEVCRTLKKLITDVNI 339
+ + +K T+ + + + T + + L K + + ++
Sbjct: 386 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 445
Query: 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQAMHKAG 397
+ L L + L+P ++ L +K + + L +
Sbjct: 446 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 505
Query: 398 CLNLVDVVED-----VKTSVKNKVPLVRS---LTLNWVTFCIETSSKAAVLKVHKDYVPI 449
+ V V + + S L + I + + +
Sbjct: 506 SPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDL 565
Query: 450 CMECLN-----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI---- 500
+ D EV++ A S + I ++ L + + +L I
Sbjct: 566 FTCTIKRLKAADIDQEVKERAISCMGQIICNL-GDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 501 -AGSGGDVATGTSSARVQTSGGSVPSV----EASESSFVRKSAASMLSGKRPVSAAPASK 555
+ +A ++ G + ++ S L + +
Sbjct: 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 684
Query: 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEP-SEMSLEEIESRLGSLIPADTVGQLKSAV 614
+ + A + +++ + GS++ +
Sbjct: 685 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744
Query: 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML---PGWSEKNVQVQQQVIEVINYLA 671
L A+ Q + + L+R++ + + Q + + + L
Sbjct: 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804
Query: 672 ATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK--DH 729
K V + + + R A+ L + E I++
Sbjct: 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 864
Query: 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
+ +V S +A G + + S L +
Sbjct: 865 PSEEVKS-------AASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSA 917
Query: 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR-- 847
+K ++ ++ LL + E + ++ L +
Sbjct: 918 SVVGLKPYVENIWALLLKHCECAEE---------------------GTRNVVAECLGKLT 956
Query: 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS 907
P L L S R + AV + + + I P G L D
Sbjct: 957 LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDP 1015
Query: 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR-------------- 953
+ N+ L+T + A + VL + K+ +R
Sbjct: 1016 DLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDG 1075
Query: 954 --------ECTLTVLDAWLAAVHLDKMVPYVTTALTD 982
EC T+LD+ L + + + + +V L D
Sbjct: 1076 LDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD 1112
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.9 bits (146), Expect = 2e-09
Identities = 122/1002 (12%), Positives = 283/1002 (28%), Gaps = 99/1002 (9%)
Query: 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472
+ R + N + ++ S + V + ++ L D EV++ A L +
Sbjct: 13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPL 72
Query: 473 AKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532
V +E ++ L + M+ S+
Sbjct: 73 VSKVKEYQVETIVDTL-------CTNML----------------------------SDKE 97
Query: 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGK-QETSKLTEAPEDVEPSEMSL 591
+R ++ L K + P + G + + K +G+ E + +
Sbjct: 98 QLRDISSIGL--KTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 155
Query: 592 EEIESRLGSLIPAD-------TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644
++ SR G L+ + QL S R I +L V + N V+++
Sbjct: 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-IVFVDLIEH 214
Query: 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHA 702
L+ L ++ + I+ I ++ A + + + + + + R +
Sbjct: 215 LLSELS--KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYC 272
Query: 703 MKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL 756
++ +F I K + N E
Sbjct: 273 IQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDE-----DEDENAMDADGGDD 327
Query: 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816
D + + + R A K L A+ + F V PAL+S E
Sbjct: 328 DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 387
Query: 817 PFEGTV-------VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV 869
+ + ++ G + + L K ++ K
Sbjct: 388 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT 447
Query: 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGP 928
R + +++ + + G + S+ NL + L L + P
Sbjct: 448 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP 507
Query: 929 -AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------------HLDKMVP 974
+ ++ ++ C+GD + L V + + ++ +
Sbjct: 508 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFT 567
Query: 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEA 1034
L A + E ++ + + + L + K+ R
Sbjct: 568 CTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVK 627
Query: 1035 CIVEILRAGGQETIEKNLKDIQ---GPALALILERIKLNGASQVSMGPTSKSSSKVPKSA 1091
+ I + + + L + L +KL S + + + S S
Sbjct: 628 ALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI 687
Query: 1092 SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 1151
+ + S + ++ A + + + + R + +
Sbjct: 688 DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGG 747
Query: 1152 FEDPRIEQIQEL-----ENDMMKYFREDLHRRLLSTD-FKKQVDGLEMLQKALPSIRKDI 1205
++ Q L N L + S + K + ++ +
Sbjct: 748 ALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC 807
Query: 1206 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1265
+ ++ F+ S +T +++L L +L + G+ + S ++E
Sbjct: 808 PKEGPAVVGQFIQDVKNSRSTDSIRLLALL-----SLGEVGHHIDLSGQLELKSVILEAF 862
Query: 1266 GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE 1325
E+V+ I + + LP++L+ + S+ R + L +
Sbjct: 863 SSPSEEVKSAASYALGSISV-GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG 921
Query: 1326 ISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
+ +++ ++ + R L I E +
Sbjct: 922 LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL 963
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (119), Expect = 2e-06
Identities = 59/519 (11%), Positives = 146/519 (28%), Gaps = 63/519 (12%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVA---------DSN 65
P + +K+ +EA + L I + P K D +
Sbjct: 520 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 579
Query: 66 APVQDKALDALIAYLKAADADAGRYAKEVC--------DAIAAKCLTGRPKTVEKAQAVF 117
V+++A+ + + + G + I + +
Sbjct: 580 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI 639
Query: 118 MLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177
L L L + + + + A+D++ + S+ + + ++ P L
Sbjct: 640 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPP-LI 698
Query: 178 DHQDQNVRASSKGLTLELCRWIGK----------DPVKTILFEKMRDTMKKELEVELVNV 227
D +V + L + + + ++ + ++
Sbjct: 699 SESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQA 758
Query: 228 SGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEK 287
+ + L + S+ ++S + + P + + +
Sbjct: 759 LVVTGTNNLGYMDLLRMLTGPVYSQSTAL-THKQSYYSIAKCVAALTRACPKEGPAVVGQ 817
Query: 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347
+ S R A+ L ++ I E+ + + + + V A
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVG--HHIDLSGQLELKSVILEAFSSPSEEVKSAASY 875
Query: 348 AIGNLARGLRTHF----------SGSSRFLL-----PVLLEKLKEKKPTVAESLTQTLQA 392
A+G+++ G + ++LL ++ E++ L
Sbjct: 876 ALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK 935
Query: 393 MHK----------AGCL------NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436
+ A CL + ++ +K + + RS + V F I +
Sbjct: 936 HCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQ 995
Query: 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
+ K+ + ++ L D VR A + A +
Sbjct: 996 PIDPLL-KNCIGDFLKTLEDPDLNVRRVALVTFNSAAHN 1033
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 3e-07
Identities = 73/598 (12%), Positives = 165/598 (27%), Gaps = 40/598 (6%)
Query: 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 827
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERT--RSELLPFLTDTIYDEDE------------- 63
Query: 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V + + + G P + P L + VR +++E++ I E +
Sbjct: 64 VLLALAEQLGTFTTLVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS-- 119
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
P+ F L RL + + G + + D
Sbjct: 120 --PSDLEAHFVPLVKRLAGGDW--FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007
+ +R + L + + LD + + ++ + L +
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 1008 PD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065
+ A ++ A DKS VR E+ +A G E + +L +
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 1066 RIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
++ + +V + S+ + + +S K A IM +
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 1126 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQEL--ENDMMKYFREDLHRRLLSTD 1183
+ + ++ + ++ + E+ + + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 1184 FKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243
++ ++ +E + + + + L L +L +
Sbjct: 416 WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA--WLVDHVYAIREAATSNLKKLVEKFG 473
Query: 1244 DEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS----ATKTLPYILEG 1299
E A +P ++ SG R + LP +L
Sbjct: 474 KEWAH------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRM 527
Query: 1300 LRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLAT 1357
R + + Q + I+ LT ++D +++ A L
Sbjct: 528 AGDPVANVRFNVAKSLQKIGPILDNSTL-QSEVKPILEKLTQDQDVDVKYFAQEALTV 584
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 1e-06
Identities = 56/467 (11%), Positives = 138/467 (29%), Gaps = 15/467 (3%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKAL 73
+P RL +W + L ++C EL F+ +D V+ A
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KAELRQYFRNLCSDDTPMVRRAAA 185
Query: 74 DAL--IAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLD 131
L A + D + + + + R VE + L + + + +
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRA---SS 188
+ +A ++K + D + G +I + + D + + A
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 189 KGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQE 248
K L ++ + + + +++ + + ++ I + +
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 249 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
+ E ++ +D V + L+ E + KW R +
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368
+ LA + D ++ + D A+ A + L ++ ++
Sbjct: 426 MPLLAGQLGVEFFDE-KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATII 482
Query: 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNW 426
P +L + + + + + ++ ++ V + V VR
Sbjct: 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKS 542
Query: 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473
+ + + + PI + D +V+ A L ++
Sbjct: 543 LQKIGPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 8e-06
Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 11/195 (5%)
Query: 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN 908
+S P +V+ E W+VRL IE + + + L D
Sbjct: 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL---VDHV 454
Query: 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968
+ A L + G E + ++ +L GD R TL ++
Sbjct: 455 YAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512
Query: 969 LD----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024
D M+P V D A R ++ L K L + + D+
Sbjct: 513 QDITTKHMLPTVLRMAGDPV--ANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQ 570
Query: 1025 SSDVRKAAEACIVEI 1039
DV+ A+ + +
Sbjct: 571 DVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 0.001
Identities = 81/612 (13%), Positives = 171/612 (27%), Gaps = 44/612 (7%)
Query: 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNI 339
D L P+ + ++ R +++ +L+ +A + +E+ L I D
Sbjct: 7 DSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIALALGVER-TRSELLPFLTDTIYD-ED 62
Query: 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399
V + + +G + LLP L ++ V + ++L+A+ +
Sbjct: 63 EVLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI--SHEH 118
Query: 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459
+ D+ VK + V + +D TP
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTP 178
Query: 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519
VR A A +G ++ + S + + V A V +
Sbjct: 179 MVR-------RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231
Query: 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSA---APASKKGGPVKPSAKKDGSGKQETSK 576
+ + AA S + +K + + Q K
Sbjct: 232 QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291
Query: 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW-----KERLEAISSLRQQVEA 631
EA S E E+ + Q+ + + + +
Sbjct: 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351
Query: 632 VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISE 691
L + I L L ++ +V+ +I ++ + +L +
Sbjct: 352 SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA 411
Query: 692 RVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS--EGILWMVSAVEDF 749
A + R ++ + + +G F E+L + V + E + + +
Sbjct: 412 EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471
Query: 750 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 809
+I R T+ + L + G DI + P +L
Sbjct: 472 FGKEWAHATIIPKVLA-MSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMA 528
Query: 810 -DAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWK 868
D V ++ + + L + + P L K + D
Sbjct: 529 GDPVAN--------VRFNVAKSLQKIGPI-------LDNSTLQSEVKPILEKLTQDQDVD 573
Query: 869 VRLESIEAVNKI 880
V+ + EA+ +
Sbjct: 574 VKYFAQEALTVL 585
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 4e-05
Identities = 51/336 (15%), Positives = 116/336 (34%), Gaps = 29/336 (8%)
Query: 614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ----QQVIEVINY 669
+ + LEAI + Q ++ Q D+S EIL ++ + E + V+ ++ + +
Sbjct: 145 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEF 203
Query: 670 LAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDH 729
A K ++ ++ ++ + + D + R A++ L Y+ M+ +
Sbjct: 204 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI---------MSLYYQYMETY 254
Query: 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
P I + V+ ++ + C + + A+ + KF
Sbjct: 255 MGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 312
Query: 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRED 849
+L + L+ D + + + + + +D
Sbjct: 313 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT-----------CCEDD 361
Query: 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909
I P + + +++PDW+ R ++ A ILE + L + D +
Sbjct: 362 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 421
Query: 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945
+ T+G + + A L+ +L+CL
Sbjct: 422 VVRDTAAWTVGRICELLPEAAINDV--YLAPLLQCL 455
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 4e-04
Identities = 70/725 (9%), Positives = 202/725 (27%), Gaps = 57/725 (7%)
Query: 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
I + P++ + +++A+ D + H +L+ D +
Sbjct: 95 QIKTNALTALVS-IEPRIAN-AAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVK 152
Query: 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836
A++ LG + + P + ++ +L A+ + V + A + +
Sbjct: 153 RASLLALGYMCESADPQSQALVSSSNN-ILIAIVQGAQSTETSKAVR----LAALNALAD 207
Query: 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGEL 896
+ + RE + ++ ++ D +V+ + + KI+ + ++P L
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL 267
Query: 897 FGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECT 956
+ + N + T+ + + ++ L+ +++
Sbjct: 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ-FPQSPLQSYNFALSSIKDVV 326
Query: 957 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016
+L+ + + + A L + L L
Sbjct: 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLE-------------F 373
Query: 1017 ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVS 1076
+T + R+AA I+ + + L L +N S
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL------MNDQSLQV 427
Query: 1077 MGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKD 1136
T+ ++ S + + G + ++ + + +
Sbjct: 428 KETTAWCIGRIADSVAESIDPQ-QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE 486
Query: 1137 SNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGL-EMLQ 1195
+ + L + E R + V+ + +
Sbjct: 487 ATPSPIYNFY----------PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536
Query: 1196 KALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTL-RDEGYSLTESEA 1254
+ SI +++ L + Q + L ++ + + + R S+
Sbjct: 537 ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD 596
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT------KTLPYILEGLRSKNNRTR 1308
+ + + + + + PY+L+ L ++
Sbjct: 597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656
Query: 1309 IECVDLVGFLIDHHGAEISGQLKSL--QIVASLTAER-DGEIRKAALNTLATGYKILGED 1365
I V + + + + ++ + ++ E++ A L+ +G D
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716
Query: 1366 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1425
Y+ + + + + + E + + + +V + I D
Sbjct: 717 FIPYLNDIMALCVAAQNTKPENGTLEAL--------DYQIKVLEAVLDAYVGIVAGLHDK 768
Query: 1426 SQSVS 1430
+++
Sbjct: 769 PEALF 773
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 0.001
Identities = 70/591 (11%), Positives = 171/591 (28%), Gaps = 61/591 (10%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY----DSNKNL 911
P L L+S D+ + A+ KI E++ + + + + S+ +
Sbjct: 129 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 188
Query: 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA------ 965
+ + + A+ ++ GD + +R+ L L
Sbjct: 189 RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 248
Query: 966 AVHLDKMVPYVTTALTDAKLG-AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI-AMTD 1023
H+ +V Y+ D A + + L++Q L P + M
Sbjct: 249 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 308
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083
D+ + ++ I + A + I+ +
Sbjct: 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTI 368
Query: 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1143
S + S ++P + ++ ++ V+ +L + + +
Sbjct: 369 SDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 428
Query: 1144 RM----------VVRRFKFEDPRIEQI-------------QELENDMMKYFREDLHRRLL 1180
M +++ + + I + + +K +L +R+L
Sbjct: 429 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 488
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
++ + Q +++ L +L V F K LL + + + L D
Sbjct: 489 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 548
Query: 1241 TLRD-------------------EGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTK 1281
++ + + L CL + + +
Sbjct: 549 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 608
Query: 1282 QIVNFYSAT--KTLPYILEGLRSKNNRT--RIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337
+ VN T + + + + + I +DL+ L + G I + I+
Sbjct: 609 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 668
Query: 1338 SL---TAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1385
+ ++ E+R+++ L K + + + + L+ F
Sbjct: 669 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1972 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.96 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.93 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.88 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.81 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.8 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.7 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.68 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.67 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.15 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.12 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.36 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.14 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.08 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.03 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.81 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.79 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.74 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.59 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.17 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 97.14 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.14 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 96.86 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.83 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 96.31 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 95.77 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 95.09 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 92.16 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 90.7 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 90.42 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 89.93 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 87.16 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 86.9 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 85.37 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 84.09 | |
| d1elka_ | 153 | Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | 81.13 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.3e-24 Score=307.78 Aligned_cols=933 Identities=15% Similarity=0.148 Sum_probs=573.2
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCC-CCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHH
Q 000167 15 PWEDRLLHKNWKVRNEANIDLAALCDSITD-PKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (1972)
Q Consensus 15 pl~erl~~k~WK~R~~ayeel~~~~~~~~d-~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~ 93 (1972)
.|.|++.|.|+..|.+|.++|.+.++...- -++..+.++.+.+.+.+.|+|+.||..|+.||..++..... .....
T Consensus 7 ~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~---~~~~~ 83 (1207)
T d1u6gc_ 7 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 83 (1207)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH---hhHHH
Confidence 367899999999999999999999864321 12334667778888899999999999999999999888754 24567
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHh-hhh-------hhhHHH----HHHHHh-hcCChhhHHHHHHHHHHHHHHhC
Q 000167 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVE-LEA-------VDVFLD----VMEKAI-KNKVAKAVVPAIDVMFQALSEFG 160 (1972)
Q Consensus 94 v~~~LveK~l~~k~~~k~~a~~~ll~~~E-~~~-------~~~v~~----~L~~~~-~~KnpKv~~~~l~~l~~~l~~fG 160 (1972)
+++.|+...++.+..+|+.+.-++-.+++ +.. ...++. .+.... ..+++.++.+++.+|.+++..||
T Consensus 84 l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g 163 (1207)
T d1u6gc_ 84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 163 (1207)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 88888888777788888887655544443 211 122333 333333 46788999999999999999999
Q ss_pred CCccC-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHH------------HHHhc
Q 000167 161 AKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEV------------ELVNV 227 (1972)
Q Consensus 161 ~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~------------~f~k~ 227 (1972)
....+ ...+++.+...+.|++..||..|..++..+..++++..+...+ . ..++.+.. .+..+
T Consensus 164 ~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~-~----~ll~~l~~~~~~~~~~~~~~~l~~l 238 (1207)
T d1u6gc_ 164 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLI-E----HLLSELSKNDSMSTTRTYIQCIAAI 238 (1207)
T ss_dssp SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHH-H----HHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH-H----HHHHHHccCCCHHHHHHHHHHHHHH
Confidence 86554 3569999999999999999999999999999998875332211 1 11111111 00000
Q ss_pred cCCCCCCcc---------------------hhhhhhHhhhh---hcccc--------------CCCCCCCCCCCCCCCCC
Q 000167 228 SGTARPTRK---------------------IRAEQDKELGQ---ELISE--------------DVGPGPSEESTADVPPE 269 (1972)
Q Consensus 228 ~~~~~P~R~---------------------~rs~~~~~~~~---~a~~~--------------~~~~~~~~~~~~~~~~~ 269 (1972)
.. ..|.++ +|......... ..+.. .....+... ......+
T Consensus 239 ~~-~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~-~~~~~~~ 316 (1207)
T d1u6gc_ 239 SR-QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYN-YDDEDED 316 (1207)
T ss_dssp HH-HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------
T ss_pred HH-HcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchh-hhhHHHH
Confidence 00 001111 01000000000 00000 000000000 0000000
Q ss_pred CCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHH
Q 000167 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQA 348 (1972)
Q Consensus 270 iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~ 348 (1972)
.+..+.....+. .... +..+....+..|+.|+.+++.|..++. .+......|..+++.|...+.|.+..|+..++.+
T Consensus 317 ~~~~~~~~~~~~-~~~~-~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~ 394 (1207)
T d1u6gc_ 317 ENAMDADGGDDD-DQGS-DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHA 394 (1207)
T ss_dssp ---------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHH
T ss_pred Hhhhhhhccchh-hhhH-HHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 000000001111 1111 345666788999999999999999874 4544444567788999999999999999999999
Q ss_pred HHHHHHHhhh-------------------chhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC----CChHhHH
Q 000167 349 IGNLARGLRT-------------------HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC----LNLVDVV 405 (1972)
Q Consensus 349 l~~La~~L~~-------------------~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~----~~l~~il 405 (1972)
+..+....+. .+..+...+++.+.+.++++...++.++..++..++.... ..+..++
T Consensus 395 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~ 474 (1207)
T d1u6gc_ 395 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLV 474 (1207)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHH
T ss_pred HHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhH
Confidence 9999876542 2346677889999999999999999999999999887621 2245667
Q ss_pred HHHHHHhhcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCch----
Q 000167 406 EDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR---- 479 (1972)
Q Consensus 406 ~~l~~~l~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~---- 479 (1972)
+.+...+.+++ ..+|..++.++..++..+....+.+++..+.+.+..++.|..+.+|..|..+++.+.+.++..
T Consensus 475 ~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~ 554 (1207)
T d1u6gc_ 475 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPS 554 (1207)
T ss_dssp HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccch
Confidence 77777777544 578999999999999998888888889999999999999999999999999999999987632
Q ss_pred --hHHHhHhhccHHHHHHH-----------------HHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCccccccccccc
Q 000167 480 --PLERSIEKLDDVRRNKL-----------------SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540 (1972)
Q Consensus 480 --~~~~~l~~Ld~~~~kkI-----------------~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s 540 (1972)
.+.+++..+-+.....+ ...+...++.. .+..+ .....-..
T Consensus 555 ~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~-----------------~~~~~--~~l~~l~~- 614 (1207)
T d1u6gc_ 555 SFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNL-----------------GSDLP--NTLQIFLE- 614 (1207)
T ss_dssp CCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC-----------------CTHHH--HHHHHHHH-
T ss_pred hhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhh-----------------HHHHH--HHHHHHHH-
Confidence 12333333322111111 00001100000 00000 00000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHH
Q 000167 541 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLE 620 (1972)
Q Consensus 541 ~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ 620 (1972)
... .+... ..+-........+ .. ...+. .-+.. +-+.+...+.+.+|..|..
T Consensus 615 ~l~--~~~~r------------~~a~~~l~~i~~~-~~-------~~~~~-~~l~~-----~~~~l~~~l~~~~~~~r~~ 666 (1207)
T d1u6gc_ 615 RLK--NEITR------------LTTVKALTLIAGS-PL-------KIDLR-PVLGE-----GVPILASFLRKNQRALKLG 666 (1207)
T ss_dssp HTT--SSSHH------------HHHHHHHHHHTTC-SS-------CCCCH-HHHHH-----HHHHHHHHTTSCCHHHHHH
T ss_pred Hhc--chhhH------------HHHHHHHHHHHHh-cc-------chhHH-HHHHH-----HHHHHHHhcccchHHHHHH
Confidence 000 00000 0000000000000 00 00010 11111 1245678889999999999
Q ss_pred HHHHHHHHHHhccc-cch-hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhh
Q 000167 621 AISSLRQQVEAVQN-LDQ-SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKT 698 (1972)
Q Consensus 621 a~e~L~~~v~~~~~-~~~-~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~ 698 (1972)
++..|..++..... ... ..+.++..+. +.+.|++.++...+++++..++...+.........+++.++..+.++..
T Consensus 667 al~~L~~l~~~~~~~~~~~~~~~~l~~l~--~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~ 744 (1207)
T d1u6gc_ 667 TLSALDILIKNYSDSLTAAMIDAVLDELP--PLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744 (1207)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHTTCG--GGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHhccccchhHHHhhHHHhhc--cccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchh
Confidence 99999999888543 221 2233443332 4678999999999999998887655432222333344444444433322
Q ss_pred hHHHHHHHHHHHh------------------------------------------------hcChh--HHHHHHHHhhh-
Q 000167 699 RAHAMKCLTTFSE------------------------------------------------AVGPG--FIFERLYKIMK- 727 (1972)
Q Consensus 699 r~~a~~~L~~l~e------------------------------------------------~~~~~--~vl~~l~~~l~- 727 (1972)
...+..++..+.. ..+.. .++..++....
T Consensus 745 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~ 824 (1207)
T d1u6gc_ 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKN 824 (1207)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTT
T ss_pred hhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 2222222221111 11100 01111111111
Q ss_pred hCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHH
Q 000167 728 DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807 (1972)
Q Consensus 728 ~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~ 807 (1972)
...++.++..++..+.++....+... ...+.+.+... +.+.++.||.+|..++|.+.....+.+. |.+++
T Consensus 825 ~~~~~~~~~~al~~Lge~~~~~~~~~--~~~l~~~l~~~-l~~~~~~vr~aAa~aLg~l~~~~~~~~l-------p~il~ 894 (1207)
T d1u6gc_ 825 SRSTDSIRLLALLSLGEVGHHIDLSG--QLELKSVILEA-FSSPSEEVKSAASYALGSISVGNLPEYL-------PFVLQ 894 (1207)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHSCCCS--CTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHHTHHHHH-------HHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhccccc--hHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHhhHHHHh-------HHHHH
Confidence 13456778888888888777776543 23566777776 9999999999999999988765433322 33333
Q ss_pred HHHH--------------HHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHH
Q 000167 808 ALDA--------------EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLES 873 (1972)
Q Consensus 808 ~Le~--------------efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~ea 873 (1972)
.++. -+.... .+.+ ......+.+.++..+.+.+|.+|..+
T Consensus 895 ~l~~~~~~~~~ll~al~ei~~~~~------------------------~~~~--~~~~~~i~~~L~~~~~~~~~~vr~~~ 948 (1207)
T d1u6gc_ 895 EITSQPKRQYLLLHSLKEIISSAS------------------------VVGL--KPYVENIWALLLKHCECAEEGTRNVV 948 (1207)
T ss_dssp HHHSCGGGHHHHHHHHHHHHHSSC------------------------STTT--HHHHHHHHHHHTTCCCCSSTTHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHHHhcc------------------------hhhh--HHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3321 111100 0000 01223344556667888899999999
Q ss_pred HHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHH
Q 000167 874 IEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 953 (1972)
Q Consensus 874 le~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr 953 (1972)
.+.+.+++.. . ..++++.|..++.|.+..++..++.++..+...++..+.+|++.+++.++..++|++..||
T Consensus 949 a~~lg~L~~~-----~---~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR 1020 (1207)
T d1u6gc_ 949 AECLGKLTLI-----D---PETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVR 1020 (1207)
T ss_dssp HHHHHHHHHS-----S---GGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHH
T ss_pred HHHHHHHHhc-----C---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999988742 1 2678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC--chhhHHHHHHHHhcC-CC-------------------ChhHHHHHHHHHHHHhccCCCCCChh
Q 000167 954 ECTLTVLDAWLAAVH--LDKMVPYVTTALTDA-KL-------------------GAEGRKDLFDWLSKQLTGLSGFPDAA 1011 (1972)
Q Consensus 954 ~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~-~~-------------------~~~~R~~~l~~L~~~l~~~~~~~~~~ 1011 (1972)
.+|..|+++++++-+ +...++.+.+.|.+. .+ .-++|..+++.+...+......-++.
T Consensus 1021 ~~al~~l~~~~~~~p~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~ 1100 (1207)
T d1u6gc_ 1021 RVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIF 1100 (1207)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhcCHH
Confidence 999999999998865 344555555555321 00 13478888888888887655444566
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000167 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1972)
Q Consensus 1012 ~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1972)
+++..+...|.| +.|||--+.-.+..+....+. .+.+++..|
T Consensus 1101 ~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~-~~~~~l~~~ 1142 (1207)
T d1u6gc_ 1101 EFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPS-AVLQRLDRL 1142 (1207)
T ss_dssp HHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCH-HHHTTTTTT
T ss_pred HHHHHHHhcccc-hHHHHHHHHHHHHHHHHhCcH-HHHHHHHHH
Confidence 666668888888 468999888888888876654 344454444
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.1e-21 Score=272.66 Aligned_cols=959 Identities=12% Similarity=0.118 Sum_probs=564.7
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCcc--ChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHH
Q 000167 130 LDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKII--PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTI 207 (1972)
Q Consensus 130 ~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~--~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~ 207 (1972)
+..|+..+.+..|.++..+++.|.+.+.....+.- ..+.+++.+.++|+|+++.||+.|..+++.++.++++..+
T Consensus 5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~--- 81 (1207)
T d1u6gc_ 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV--- 81 (1207)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH---
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH---
Confidence 44556667888888888888888887765443221 2567999999999999999999999998888877664211
Q ss_pred HhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcc
Q 000167 208 LFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEK 287 (1972)
Q Consensus 208 l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~ 287 (1972)
..+-.
T Consensus 82 ----------~~l~~----------------------------------------------------------------- 86 (1207)
T d1u6gc_ 82 ----------ETIVD----------------------------------------------------------------- 86 (1207)
T ss_dssp ----------HHHHH-----------------------------------------------------------------
T ss_pred ----------HHHHH-----------------------------------------------------------------
Confidence 11100
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhc-CCCCC--CCC----hHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhc
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLAS-TKRIA--PGD----FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH 359 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~--~~~----y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~ 359 (1972)
.+...+.+.+++.|..+...|+.++. -+... ... ...++..|...+. ..+..+...|+.+++.++..++..
T Consensus 87 -~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~ 165 (1207)
T d1u6gc_ 87 -TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL 165 (1207)
T ss_dssp -HHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS
T ss_pred -HHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 11112223334444444444444332 11111 011 2234444455555 667888999999999999999999
Q ss_pred hhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChh
Q 000167 360 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKA 437 (1972)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1972)
+.++...+++.++..+.+.+..||..+..|+..++.+ +...+..+++.++..+. +.++.+|..++..+..+....+.
T Consensus 166 l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~- 244 (1207)
T d1u6gc_ 166 LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH- 244 (1207)
T ss_dssp CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG-
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch-
Confidence 9999999999999999999999999999999999876 11234567888887665 66777887777777777666554
Q ss_pred HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccC
Q 000167 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517 (1972)
Q Consensus 438 ~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~ 517 (1972)
.+.++++.++|.+.+++++.+.++|+.+..++..+....++. +.+++..+ +..+.......
T Consensus 245 ~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~i-------i~~~l~~l~~d----------- 305 (1207)
T d1u6gc_ 245 RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VYPHVSTI-------INICLKYLTYD----------- 305 (1207)
T ss_dssp GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHHHHHHH-------HHHHTTCCCCC-----------
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhh-hhhhHHHH-------HHHHHHHHhcC-----------
Confidence 466788999999999999999999999999999999988865 55555432 21221111000
Q ss_pred CCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 000167 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR 597 (1972)
Q Consensus 518 ~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~ 597 (1972)
|.... ... . .. ... . ... ..++.
T Consensus 306 --------p~~~~-----~~~----~------------------------~~--------~~~-~---~~~-~~~~~--- 328 (1207)
T d1u6gc_ 306 --------PNYNY-----DDE----D------------------------ED--------ENA-M---DAD-GGDDD--- 328 (1207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------cchhh-----hhH----H------------------------HH--------Hhh-h---hhh-ccchh---
Confidence 00000 000 0 00 000 0 000 00000
Q ss_pred hhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC
Q 000167 598 LGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1972)
Q Consensus 598 ~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~-~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (1972)
....+.......+..|+.|..+++-|..++...++. ....+.++..+. ..++|.+..|...++.++..++.....
T Consensus 329 --~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~--~~l~d~~~~vr~~~~~~l~~l~~~~~~ 404 (1207)
T d1u6gc_ 329 --DQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI--SRFKEREENVKADVFHAYLSLLKQTRP 404 (1207)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHH--STTSCSSSHHHHHHHHHHHHHHHHHCC
T ss_pred --hhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHhcCCchHHHHHHHHHHHHHHHhccc
Confidence 011123344567889999999999999888764332 222333444443 267888888999999999888865432
Q ss_pred Cc-------------------hhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh------hHHHHHHHHhhhh-
Q 000167 677 FP-------------------KKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP------GFIFERLYKIMKD- 728 (1972)
Q Consensus 677 ~~-------------------~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~------~~vl~~l~~~l~~- 728 (1972)
.. ...+..+++.+...+.+ .++|..+..++..++...+. ..++..++..+..
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~ 484 (1207)
T d1u6gc_ 405 VQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK 484 (1207)
T ss_dssp C------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCS
T ss_pred hhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcc
Confidence 11 11222344455544444 35788888888888776542 2234444444422
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCCC--hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHH
Q 000167 729 HKNPKVLSEGILWMVSAVEDFGVSHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALL 806 (1972)
Q Consensus 729 ~KnpKv~~e~l~~L~~~i~~fG~~~l~--~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll 806 (1972)
.....++.+++..+..++..++...+. +..+.+.+... +.+.+..++..|..++..+...+++.......+..+.+.
T Consensus 485 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~ 563 (1207)
T d1u6gc_ 485 SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVAC-VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK 563 (1207)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHH-HccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHH
Confidence 345578889999999998877654332 34455666665 888999999999999888877665322111111111111
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhc--CCCCHHHHHHHHHHHHHHHHHc
Q 000167 807 SALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL--ESPDWKVRLESIEAVNKILEEA 884 (1972)
Q Consensus 807 ~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l--~d~~Wk~R~eale~l~~ll~~a 884 (1972)
+ +.+.++..+ .+.++..|..++..+..++...
T Consensus 564 ~----------------------------------------------l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~ 597 (1207)
T d1u6gc_ 564 D----------------------------------------------LFTCTIKRLKAADIDQEVKERAISCMGQIICNL 597 (1207)
T ss_dssp H----------------------------------------------HHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred H----------------------------------------------HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Confidence 1 222233333 3456788999999999988754
Q ss_pred cccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHc-ChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000167 885 NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM-GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963 (1972)
Q Consensus 885 ~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~al-g~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i 963 (1972)
...+.+. +..++..+..++.+.. .+..++..+..++... +..+.+++..+++.+...+.++...+|.++..++..+
T Consensus 598 ~~~~~~~-~~~~l~~l~~~l~~~~--~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l 674 (1207)
T d1u6gc_ 598 GDNLGSD-LPNTLQIFLERLKNEI--TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 674 (1207)
T ss_dssp GGGCCTH-HHHHHHHHHHHTTSSS--HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred hhhhHHH-HHHHHHHHHHHhcchh--hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 4444443 4677778888887654 4566777777777643 4568899999999999999999999999999999999
Q ss_pred HHhcCc---hhhHHHHH----HHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCC--CHHHHHHH
Q 000167 964 LAAVHL---DKMVPYVT----TALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDK--SSDVRKAA 1032 (1972)
Q Consensus 964 ~~~~~l---~~ll~~l~----~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~--~~dVR~aA 1032 (1972)
+.+.+- ...++.+. ..+.+. +..++..++..+.......+.. .....++..++..+.+. ...+..+.
T Consensus 675 ~~~~~~~~~~~~~~~~l~~l~~ll~~~--d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~ 752 (1207)
T d1u6gc_ 675 IKNYSDSLTAAMIDAVLDELPPLISES--DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAM 752 (1207)
T ss_dssp HHHCCTTCCHHHHHHHHTTCGGGSCTT--CHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHhccccchhHHHhhHHHhhccccccc--cHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHH
Confidence 998752 22333333 333333 5678888888887766655431 12233444455555433 22222222
Q ss_pred HHHHHHHHHHcCh-----hHHHHHhc-cCCh--------HHHHHHHHHHhh---ccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 1033 EACIVEILRAGGQ-----ETIEKNLK-DIQG--------PALALILERIKL---NGASQVSMGPTSKSSSKVPKSASNGV 1095 (1972)
Q Consensus 1033 ~~~l~~l~~~~G~-----~~~~~~l~-~L~~--------~~~~~I~~~l~k---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1095 (1972)
...+..+.. .+. ..+.+.+. .+.. .....+..++.. ..+.. . .
T Consensus 753 ~~~~~~l~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~------~----------~--- 812 (1207)
T d1u6gc_ 753 LDFFQALVV-TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKE------G----------P--- 812 (1207)
T ss_dssp HHHHHHHHT-TCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCC------S----------H---
T ss_pred HHHHHHHHh-ccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhh------H----------H---
Confidence 222222221 111 11111111 0000 000001111100 00000 0 0
Q ss_pred CCCCCCCCcCCCCCCCCCCCCcccccchhhhhhhhccccCCCChHHhh-hhhccc---ccccCCChhhHHHHHHHHHHhh
Q 000167 1096 SKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE-RMVVRR---FKFEDPRIEQIQELENDMMKYF 1171 (1972)
Q Consensus 1096 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~-~~~~~k---~~f~~~~~e~ve~L~~q~~~~~ 1171 (1972)
..-.. .-.....+ ......|. .+..+. ..+......++
T Consensus 813 ------~~l~~-~l~~~~~~--------------------~~~~~~~~~al~~Lge~~~~~~~~~~~~l----------- 854 (1207)
T d1u6gc_ 813 ------AVVGQ-FIQDVKNS--------------------RSTDSIRLLALLSLGEVGHHIDLSGQLEL----------- 854 (1207)
T ss_dssp ------HHHTT-TTTTTTTT--------------------TCCHHHHHHHHHHHHHHHHHSCCCSCTHH-----------
T ss_pred ------HHHHH-HHHHHhcc--------------------cchHHHHHHHHHHHHHHHHhccccchHHH-----------
Confidence 00000 00000000 00000110 000000 00110111111
Q ss_pred hHHHHHhhcCccHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCH
Q 000167 1172 REDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTE 1251 (1972)
Q Consensus 1172 ~~~l~~~lf~~d~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~ 1251 (1972)
...++..+.+.+..-|.+|...|...... +.+..+..+.-. .++.++.-...+..+.+++. ..+.....
T Consensus 855 ~~~l~~~l~~~~~~vr~aAa~aLg~l~~~-------~~~~~lp~il~~-l~~~~~~~~~ll~al~ei~~---~~~~~~~~ 923 (1207)
T d1u6gc_ 855 KSVILEAFSSPSEEVKSAASYALGSISVG-------NLPEYLPFVLQE-ITSQPKRQYLLLHSLKEIIS---SASVVGLK 923 (1207)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH-------THHHHHHHHHHH-HHSCGGGHHHHHHHHHHHHH---SSCSTTTH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHh-------hHHHHhHHHHHH-HhcCchHHHHHHHHHHHHHH---hcchhhhH
Confidence 12355566677777888887777654332 233333322222 22333322223444444333 33333344
Q ss_pred HHHHhhhhHHHHhhCCChHHHHHHHHHHHHHHhhcCCccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccc
Q 000167 1252 SEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLK 1331 (1972)
Q Consensus 1252 ~Ea~~~lp~L~~K~Gd~k~~vr~~v~~il~~~~~v~~~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~k 1331 (1972)
..+..+++.|+..+.+..+.+|+.+-+.+..++.++| ..++|.|.+.++++|+.+|..++..+.+++...|.......+
T Consensus 924 ~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~-~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~ 1002 (1207)
T d1u6gc_ 924 PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK 1002 (1207)
T ss_dssp HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 5577788888888888999999999999999998776 568999999999999999999999999888776644322233
Q ss_pred hH-HHHHhhhcCCchHHHHHHHHHHHHHHHHhCHHHHHHh
Q 000167 1332 SL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYV 1370 (1972)
Q Consensus 1332 ~l-~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~~~v 1370 (1972)
.+ +.+-.+++|.|..||.+|+.+|..+-..-+.-|..++
T Consensus 1003 ~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l 1042 (1207)
T d1u6gc_ 1003 NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLL 1042 (1207)
T ss_dssp HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 43 5555788999999999999999988655444444443
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.4e-20 Score=245.28 Aligned_cols=554 Identities=18% Similarity=0.181 Sum_probs=366.6
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
.-|.+.+.+.+...|..|+..|..++..-... ..-.++++.|...+.|.. .|...+++.++.++.-++. ..++..+
T Consensus 13 ~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~-~~~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~~~~~~--~~~~~~l 88 (588)
T d1b3ua_ 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLVGG--PEYVHCL 88 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHHTHHHHHHHTCCCCH-HHHHHHHHHHTTCSGGGTS--GGGGGGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcH-hhHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHcCC--hhHHHHH
Confidence 34777889999999999999998876421100 113568888888888654 3555555555554443322 2468889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH----HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV----VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~i----l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1972)
+|.+...+.+..+.||+++..++..+... .+...+ +|.+....++.....|..++..+..++....... .
T Consensus 89 l~~l~~l~~~~~~~Vr~~a~~~l~~i~~~--~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~----~ 162 (588)
T d1b3ua_ 89 LPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV----K 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----H
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH----H
Confidence 99999999999999999999999999875 444433 3433344456667888888888888777665443 3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCC
Q 000167 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1972)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 523 (1972)
..+.+.+.+.+.|.++.||.+|..+++.+.+.++.+.....+ -
T Consensus 163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l---~---------------------------------- 205 (588)
T d1b3ua_ 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI---I---------------------------------- 205 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTH---H----------------------------------
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHH---H----------------------------------
Confidence 667888999999999999999999999998877754222111 0
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000167 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1972)
Q Consensus 524 s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 603 (1972)
T Consensus 206 -------------------------------------------------------------------------------- 205 (588)
T d1b3ua_ 206 -------------------------------------------------------------------------------- 205 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (1972)
+-+...+.+.+|..|..|++.+..+....+..+ ....++..+.. .+.|.+..|...+.+++..++...+. .....
T Consensus 206 ~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~-~~~~i~~~l~~--~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~ 280 (588)
T d1b3ua_ 206 PMFSNLASDEQDSVRLLAVEACVNIAQLLPQED-LEALVMPTLRQ--AAEDKSWRVRYMVADKFTELQKAVGP--EITKT 280 (588)
T ss_dssp HHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH-HHHHTHHHHHH--HHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH-HHHHHHHHHHH--hcccccHHHHHHHHHhHHHHHHHhhh--hhhhh
Confidence 112223344455555555555554443322110 11122222211 22455555555555555544443211 01112
Q ss_pred HHHHHHHhhhcch--hhhHHHHHHHHHHHhhcChh--------HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCC
Q 000167 684 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 753 (1972)
Q Consensus 684 ~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~~~--------~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~ 753 (1972)
.+++.+..-+.|. .+|..+...|..+++..+.. .+++.+... ..+.+++||..+...+..+...+|...
T Consensus 281 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~ 359 (588)
T d1b3ua_ 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN 359 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH
T ss_pred hhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh-hcCCChHHHHHHHHHHhhhhhccchhH
Confidence 2344444434432 35566666666665544321 223333333 357788888888777777766666421
Q ss_pred CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Q 000167 754 LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES 833 (1972)
Q Consensus 754 l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~ 833 (1972)
....+++.+... +.+.++.||..+...++.+...+|..-
T Consensus 360 -~~~~l~p~l~~~-l~d~~~~v~~~~~~~l~~~~~~~~~~~--------------------------------------- 398 (588)
T d1b3ua_ 360 -TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--------------------------------------- 398 (588)
T ss_dssp -HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH---------------------------------------
T ss_pred -HHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHhhcchhh---------------------------------------
Confidence 134456666666 788888999888887777766555320
Q ss_pred cCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHH
Q 000167 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (1972)
Q Consensus 834 ~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~ 913 (1972)
+...+.+.+...+.|.+|+.|..+++.+..++...+.... ...+...+...+.|.+..|+.
T Consensus 399 ----------------~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~D~~~~VR~ 459 (588)
T d1b3ua_ 399 ----------------LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp ----------------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGGCSSHHHHH
T ss_pred ----------------hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhH---HHHHHHHHHhhccCCchhHHH
Confidence 0111234455667889999999999999998864322211 256777788889999999999
Q ss_pred HHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhH
Q 000167 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEG 989 (1972)
Q Consensus 914 ~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l----~~ll~~l~~~L~~~~~~~~~ 989 (1972)
.|+.+++.|+..+|+.+ ....++|.+...+.|++..+|.++..++..+...++. ..++|.+...+.++ .|.+
T Consensus 460 ~A~~~L~~l~~~~~~~~--~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~--v~nV 535 (588)
T d1b3ua_ 460 AATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANV 535 (588)
T ss_dssp HHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHH
T ss_pred HHHHHHHHHHHHhCcHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCC--CHHH
Confidence 99999999999999864 3466889999999999999999999999999988763 45778888888776 6899
Q ss_pred HHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCCHHHHHHHHHHHHHH
Q 000167 990 RKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 990 R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
|..++..|......... ......+.| +...++|.+.|||..|.+++..+
T Consensus 536 R~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 536 RFNVAKSLQKIGPILDN-STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCc-HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999876655432 234456777 44456899999999999999765
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.8e-17 Score=215.65 Aligned_cols=376 Identities=14% Similarity=0.107 Sum_probs=275.5
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (1972)
+.+.+.+.|.++..|..+...+..+++..+... ....++..|.. ..+|.+..|...+++++..++...+. .....
T Consensus 167 ~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~--l~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~ 241 (588)
T d1b3ua_ 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN-VKSEIIPMFSN--LASDEQDSVRLLAVEACVNIAQLLPQ--EDLEA 241 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH-HHHTHHHHHHH--HHTCSCHHHHTTHHHHHHHHHHHSCH--HHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHH-HHHHHHHHHHH--HhcCCchhhHHHHHHHHHHhhccCCH--HHHHH
Confidence 345667889999999999999998887643321 11223333322 24788999999999999988876432 22344
Q ss_pred HHHHHHHhhhcch--hhhHHHHHHHHHHHhhcChhHHHHHHHH---hhhhCCChHHHHHHHHHHHHHHHHhCCCCC---C
Q 000167 684 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYK---IMKDHKNPKVLSEGILWMVSAVEDFGVSHL---K 755 (1972)
Q Consensus 684 ~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~~~~vl~~l~~---~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l---~ 755 (1972)
.++|.+..-+.|. ++|..+.++|..+++..+++.....+.+ .+..+.++.||..++..+..++..++.... .
T Consensus 242 ~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~ 321 (588)
T d1b3ua_ 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 5677777667774 5899999999999998887655443333 234688999999999999999987765432 1
Q ss_pred hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccC
Q 000167 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (1972)
Q Consensus 756 ~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~ 835 (1972)
...+++.+... +.+.++.||.++..++..+...+|... +++.
T Consensus 322 ~~~i~~~l~~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~--~~~~----------------------------------- 363 (588)
T d1b3ua_ 322 MSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN--TIEH----------------------------------- 363 (588)
T ss_dssp HHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHH-----------------------------------
T ss_pred HHHHHHHHHHh-hcCCChHHHHHHHHHHhhhhhccchhH--HHHH-----------------------------------
Confidence 35677888887 899999999999888877776666421 1111
Q ss_pred CCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCC-ChhhHHHHHHhccccchHHHHHH
Q 000167 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLRGRLYDSNKNLVMA 914 (1972)
Q Consensus 836 s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~-~~~eL~~~L~~~L~DsN~~V~~~ 914 (1972)
+-+.+...+.|.++.+|..++..+..+.... ... ....+++.|...+.|.|..++..
T Consensus 364 ------------------l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~----~~~~~~~~ll~~l~~~~~d~~~~~r~~ 421 (588)
T d1b3ua_ 364 ------------------LLPLFLAQLKDECPEVRLNIISNLDCVNEVI----GIRQLSQSLLPAIVELAEDAKWRVRLA 421 (588)
T ss_dssp ------------------THHHHHHHHTCSCHHHHHHHHTTCHHHHHHS----CHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred ------------------HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhc----chhhhhhHHHHHHHHHHhcccHHHHHH
Confidence 2234556667778888888888777776421 111 12457778888889999999999
Q ss_pred HHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCCCChhHH
Q 000167 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEGR 990 (1972)
Q Consensus 915 Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~----~ll~~l~~~L~~~~~~~~~R 990 (1972)
++.+++.++..+|..+ +...+.|.++..+.|....||.+|..++..++..+|.+ .++|.+...+.++ ++..|
T Consensus 422 ~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~--~~~~R 497 (588)
T d1b3ua_ 422 IIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP--NYLHR 497 (588)
T ss_dssp HHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS--CHHHH
T ss_pred HHHHHHHHHHHcChHh--HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCC--CHHHH
Confidence 9999999999998765 34567888889999999999999999999999998853 4666666666665 68899
Q ss_pred HHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHH
Q 000167 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETI 1048 (1972)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~ 1048 (1972)
..++..+.......+.......+++.+..++.|+.++||.++..+|..+...+++..+
T Consensus 498 ~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~ 555 (588)
T d1b3ua_ 498 MTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL 555 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhH
Confidence 9888887765543322111133455588999999999999999999999888887543
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.1e-18 Score=239.00 Aligned_cols=495 Identities=13% Similarity=0.151 Sum_probs=334.1
Q ss_pred HHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChH
Q 000167 382 VAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (1972)
Q Consensus 382 V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 460 (1972)
+|.++..+|+.+... +..-++.+++.+...+++.+|..|..++..+..+.+.+. ..+.++++.++|.+...++|.++.
T Consensus 373 ~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~-~~~~~~l~~li~~l~~~l~d~~~~ 451 (888)
T d1qbkb_ 373 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCLSDKKAL 451 (888)
T ss_dssp SHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSH-HHHTTTHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHH-HHhcccchhhhHHHHHhccCCCHH
Confidence 577777888777654 112256677888888899999999999988887665543 345678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCccccccccccc
Q 000167 461 VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540 (1972)
Q Consensus 461 VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s 540 (1972)
||.+|..+++.+...+.......++..
T Consensus 452 Vr~~a~~~l~~~~~~~~~~~~~~~~~~----------------------------------------------------- 478 (888)
T d1qbkb_ 452 VRSITCWTLSRYAHWVVSQPPDTYLKP----------------------------------------------------- 478 (888)
T ss_dssp HHHHHHHHHHHTHHHHHSSCHHHHTTT-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhh-----------------------------------------------------
Confidence 999999998877654432211111100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHH
Q 000167 541 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLE 620 (1972)
Q Consensus 541 ~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ 620 (1972)
+-+.++..+.+.+++.|..
T Consensus 479 -------------------------------------------------------------~l~~ll~~l~d~~~~V~~~ 497 (888)
T d1qbkb_ 479 -------------------------------------------------------------LMTELLKRILDSNKRVQEA 497 (888)
T ss_dssp -------------------------------------------------------------HHHHHHHHHSSSCHHHHHH
T ss_pred -------------------------------------------------------------hHHHHHHHhcCCCHHHHHH
Confidence 0134566777788888888
Q ss_pred HHHHHHHHHHhcc-ccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC-C-chhhHHHHHHHHHhhhcc--
Q 000167 621 AISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-F-PKKCVVLCLLGISERVAD-- 695 (1972)
Q Consensus 621 a~e~L~~~v~~~~-~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~-~-~~~~~~~il~~LveKlgd-- 695 (1972)
|+..|..+++..+ ...++.+.++..|.. .+.+....+....++++..++...+. + .......+++.++++...
T Consensus 498 a~~al~~l~~~~~~~l~p~~~~il~~l~~--~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 575 (888)
T d1qbkb_ 498 ACSAFATLEEEACTELVPYLAYILDTLVF--AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK 575 (888)
T ss_dssp HHHHHHHHHHHHTTSSGGGHHHHHHHHHH--HTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcc
Confidence 9888888887633 334455555555432 23333334455566777777665432 2 234456677777765432
Q ss_pred --hhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCch
Q 000167 696 --IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773 (1972)
Q Consensus 696 --~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~ 773 (1972)
.+......+++..++...+..+. +.. +.+...++..+...+.. .+............+.
T Consensus 576 ~~~~~~~~~le~l~~i~~~~~~~~~-~~~---------~~~~~~~~~~l~~~l~~---------~~~~~~~~~~~~~~~~ 636 (888)
T d1qbkb_ 576 DEDKDLFPLLECLSSVATALQSGFL-PYC---------EPVYQRCVNLVQKTLAQ---------AMLNNAQPDQYEAPDK 636 (888)
T ss_dssp TTCTTHHHHHHHHHHHHHHSTTTTH-HHH---------HHHHHHHHHHHHHHHHH---------HHHHHHCTTTSCCCCT
T ss_pred cchHHHHHHHHHHHHHHHHhHHHHh-hhH---------HHHHHHHHHHHHHHHHH---------HHHHhcccccccchhH
Confidence 23344556677666665543321 000 01111222222222211 1111111111344566
Q ss_pred hHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCccccccc
Q 000167 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGK 853 (1972)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~ 853 (1972)
.+...+..++..+...+|..+..++.. ..
T Consensus 637 ~~~~~~l~~l~~l~~~l~~~~~~~~~~---------------------------------------------------~~ 665 (888)
T d1qbkb_ 637 DFMIVALDLLSGLAEGLGGNIEQLVAR---------------------------------------------------SN 665 (888)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHT---------------------------------------------------SC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhH---------------------------------------------------hh
Confidence 677777777777777776554433210 00
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
+.+-++..+.|.++.+|..|+..+..+.......+.+.. .+++..|...|.+.+..++..|+.++|.|+..+|..|.+|
T Consensus 666 l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py 744 (888)
T d1qbkb_ 666 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPY 744 (888)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGG
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 234566678889999999999999999886656666653 8899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC
Q 000167 934 SKGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (1972)
Q Consensus 934 ~~~llp~ll~~L~D~--k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~ 1005 (1972)
+..+++.++..+.+. +..|++.+..|++.++..++ ++.+++.++..|.... +.+.|..++..+...+...+
T Consensus 745 ~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~-d~~ek~~~~~g~~~~i~~~p 823 (888)
T d1qbkb_ 745 IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTMISVNP 823 (888)
T ss_dssp SHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSC-CSHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHHHHHCc
Confidence 999999999999864 45688888899999887764 5677788888887543 34568888888877776554
Q ss_pred CC--CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHH
Q 000167 1006 GF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILER 1066 (1972)
Q Consensus 1006 ~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~ 1066 (1972)
.. +++..++. .+....+..++++......|..+...+|.+....++.+|+|..+..+...
T Consensus 824 ~~~~~~l~~~~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~ 885 (888)
T d1qbkb_ 824 SGVIQDFIFFCD-AVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 885 (888)
T ss_dssp GGTGGGHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHcCCHHHHHHHHHh
Confidence 31 12222222 33345667899999999999999999999888899999999988887764
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=4.6e-13 Score=179.71 Aligned_cols=678 Identities=12% Similarity=0.129 Sum_probs=415.7
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCC---------
Q 000167 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAK--------- 162 (1972)
Q Consensus 94 v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~--~KnpKv~~~~l~~l~~~l~~fG~~--------- 162 (1972)
+...|-...++..+.+|..|.+-+..+.+-..+ .++..|...+. +.++.++..|...|.+.+..+...
T Consensus 6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~-~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~ 84 (861)
T d2bpta1 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFL-QFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRW 84 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhh
Confidence 333333334567999999999988877653323 45566767664 345678888887777655332210
Q ss_pred --ccCh--h-HHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCc-hhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcc
Q 000167 163 --IIPP--K-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD-PVKTILFEKMRDTMKKELEVELVNVSGTARPTRK 236 (1972)
Q Consensus 163 --~~~~--k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~-~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~ 236 (1972)
.++. + .+...+...+.+.++.||..+..++..+.++..+. .. +.+ +..
T Consensus 85 ~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w-pel--------i~~----------------- 138 (861)
T d2bpta1 85 ITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW-PEL--------MKI----------------- 138 (861)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC-HHH--------HHH-----------------
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch-HHH--------HHH-----------------
Confidence 1221 1 23455666677778888887777777766654321 00 001 111
Q ss_pred hhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhc-cCChHHHHHHHHHHHHHhcC
Q 000167 237 IRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK-ATKWSERKDAVAELTKLAST 315 (1972)
Q Consensus 237 ~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~-s~kWkeR~eaL~~L~~l~~~ 315 (1972)
+.+.+. +..+..|..|+..|..++..
T Consensus 139 -----------------------------------------------------L~~~~~s~~~~~~~~~al~~l~~i~e~ 165 (861)
T d2bpta1 139 -----------------------------------------------------MVDNTGAEQPENVKRASLLALGYMCES 165 (861)
T ss_dssp -----------------------------------------------------HHHHTSTTSCHHHHHHHHHHHHHHHHT
T ss_pred -----------------------------------------------------HHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 111111 12344566777777776632
Q ss_pred --CCCCC--CChHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHHHhhhchh--hhhhhHHHHHHHHhccCcHHHHHHHH
Q 000167 316 --KRIAP--GDFTEVCRTLKKLI--TDVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLT 387 (1972)
Q Consensus 316 --~ki~~--~~y~~l~~~L~k~l--~D~N~~V~~~A~~~l~~La~~L~~~f~--~~~~~llp~LL~klkdkk~~V~~aa~ 387 (1972)
+.+.. ....+++..+.+.+ .+.+..|+..|+.++..+...+...|. .....+++.+.+.+.+....++.++.
T Consensus 166 ~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 245 (861)
T d2bpta1 166 ADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAF 245 (861)
T ss_dssp SSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHH
Confidence 22221 12233333333333 277888999999999998887776665 34566888888999999999999999
Q ss_pred HHHHHHHHhcCCC----hHhHHHHH-HHHhhcCChHHHHHHHHHHHHHHHhcC----------------hhHHHHhhhhH
Q 000167 388 QTLQAMHKAGCLN----LVDVVEDV-KTSVKNKVPLVRSLTLNWVTFCIETSS----------------KAAVLKVHKDY 446 (1972)
Q Consensus 388 ~aL~al~~~~~~~----l~~il~~l-~~~l~~Knp~vR~~~l~~L~~~l~~~~----------------~~~l~~~l~~l 446 (1972)
.++..++...... +..++..+ ....++.++.+|..++.++..+..... .......+..+
T Consensus 246 ~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 325 (861)
T d2bpta1 246 GCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDV 325 (861)
T ss_dssp HHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 9999998751111 22333333 356678999999999998876543210 01122345666
Q ss_pred HHHHHHHhc-------CCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCC
Q 000167 447 VPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519 (1972)
Q Consensus 447 ~p~l~k~l~-------Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~ 519 (1972)
+|.+...+. |.+..+|.++..++..+....|+..+..++
T Consensus 326 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------------------------- 371 (861)
T d2bpta1 326 VPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVL---------------------------------- 371 (861)
T ss_dssp HHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHH----------------------------------
T ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhc----------------------------------
Confidence 777776663 344567788888877777777654322111
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhh
Q 000167 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLG 599 (1972)
Q Consensus 520 ~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~ 599 (1972)
T Consensus 372 -------------------------------------------------------------------------------- 371 (861)
T d2bpta1 372 -------------------------------------------------------------------------------- 371 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhcccc--chhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCC
Q 000167 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF 677 (1972)
Q Consensus 600 ~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~--~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~ 677 (1972)
+.+...+.+.+|+.|..++..+..+....... ....+-++..+.. .+.|.+..|...++.++..+++..+..
T Consensus 372 ----~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~ 445 (861)
T d2bpta1 372 ----EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN--LMNDQSLQVKETTAWCIGRIADSVAES 445 (861)
T ss_dssp ----HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH--GGGCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred ----chhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH--HhcCcchhhhhHHHHHHHHHHHHhchh
Confidence 11223345567999999998888776543221 1122333444332 567888888888888887776654321
Q ss_pred c--hhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCC
Q 000167 678 P--KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 755 (1972)
Q Consensus 678 ~--~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~ 755 (1972)
. ...+..++..++..+ ..+++++..++..+..++..+......
T Consensus 446 ~~~~~~~~~ll~~l~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 490 (861)
T d2bpta1 446 IDPQQHLPGVVQACLIGL-----------------------------------QDHPKVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp SCTTTTHHHHHHHHHHHH-----------------------------------TSCHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred hhhHHhhhhhhHHHHhcc-----------------------------------ccChHHHHHHHHHHHHHHHHhhhcccc
Confidence 1 122223333322222 235566666666666655554432111
Q ss_pred -----hhhHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000167 756 -----LKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (1972)
Q Consensus 756 -----~k~li~~l~~~-gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r 829 (1972)
...++..+... .-.+.+..+|..+..++..+....+..+.+++..+.+.....+...+.....
T Consensus 491 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~----------- 559 (861)
T d2bpta1 491 PIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDEN----------- 559 (861)
T ss_dssp GGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGG-----------
T ss_pred hhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------
Confidence 12233322221 1345667899999999999999999988888877777776666654322110
Q ss_pred cccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc-h
Q 000167 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-N 908 (1972)
Q Consensus 830 ~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~Ds-N 908 (1972)
.+.... ....+..+......+..++......+.+. ..+++..+...+.+. .
T Consensus 560 -----------------------~~~~~~----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~ 611 (861)
T d2bpta1 560 -----------------------QLTLED----AQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDS 611 (861)
T ss_dssp -----------------------GCCHHH----HHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTG
T ss_pred -----------------------hhhhhH----HhHHHHHHHHHHHHHHHHHhcchhhHHHH-HHHHHHHHhhhcccCCc
Confidence 000000 00123445556666777666543334343 367888888877544 4
Q ss_pred HHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhc
Q 000167 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTD 982 (1972)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~ 982 (1972)
..++..++.+++.++..+|..|.+|+..++|.++..+.|....||..|..++..++..++ ++.+++.+...+++
T Consensus 612 ~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~ 691 (861)
T d2bpta1 612 AFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISN 691 (861)
T ss_dssp GGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCC
Confidence 557788999999999999999999999999999999999999999999999999998876 24566667777776
Q ss_pred CCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCC-----------HHHHHHHHHHHHHHHHHcCh
Q 000167 983 AKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKS-----------SDVRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 983 ~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~-----------~dVR~aA~~~l~~l~~~~G~ 1045 (1972)
...++.+|..++..+...+...+.. +.+..++..+.+.+.... .+||+++..++..++..++.
T Consensus 692 ~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 767 (861)
T d2bpta1 692 PNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD 767 (861)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6556788988888887766555431 112223333444443322 35788888888888776654
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.3e-15 Score=208.01 Aligned_cols=723 Identities=14% Similarity=0.110 Sum_probs=429.8
Q ss_pred hcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchh-----hhhhhHHH
Q 000167 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADAD-----AGRYAKEV 94 (1972)
Q Consensus 20 l~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~-----~~~~~~~v 94 (1972)
+.+.+=+.|..+..-+...+.... + ..|.++.+.+.+.+.+.|..+++.|+.+|...++..... .......+
T Consensus 97 l~~~~~~vr~~~~~~i~~i~~~~~-~--~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~l 173 (888)
T d1qbkb_ 97 IGDSSPLIRATVGILITTIASKGE-L--QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 173 (888)
T ss_dssp GGCCCSSTTTTTTTTTHHHHTTTS-S--CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTT
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhC-c--cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Confidence 344444455555444444443211 1 124455666667788888888999999988776543221 11234457
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhh------hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccC-hh
Q 000167 95 CDAIAAKCLTGRPKTVEKAQAVFMLWVELE------AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PK 167 (1972)
Q Consensus 95 ~~~LveK~l~~k~~~k~~a~~~ll~~~E~~------~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~-~k 167 (1972)
++.++.-.-...+.+|..|..++-.++... ..+.+++.+.....+.+++++..++.+|..++..+..+..+ +.
T Consensus 174 l~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~ 253 (888)
T d1qbkb_ 174 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 253 (888)
T ss_dssp THHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTT
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 788776543356778888888877665431 12345566666677889999999999998887776665433 45
Q ss_pred HHHHhhhhhhcCCChhHHHHHHHHHHHHHHhh-CCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhh
Q 000167 168 RILKMLPELFDHQDQNVRASSKGLTLELCRWI-GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELG 246 (1972)
Q Consensus 168 ~il~~l~~ll~~~d~~VR~~a~~l~~ely~~l-G~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~ 246 (1972)
.+++.+...+.+.+..||-+|..++..+...- ....+.+++ ..+-|.. ........ ..... ..
T Consensus 254 ~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l-~~l~~~l-----------~~~~~~~~---~~~~~-~~ 317 (888)
T d1qbkb_ 254 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL-PKLIPVL-----------VNGMKYSD---IDIIL-LK 317 (888)
T ss_dssp TTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTST-TTTTTTT-----------TTSSCCSS---TTHHH-HT
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHH-----------HHHhhcch---HHHHH-Hh
Confidence 67888888899999999999877643332110 000010100 1110100 00000000 00000 00
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCCCCCCC-------CcccccccCcc--cchhhhhccCChHHHHHHHHHHHHHhcCCC
Q 000167 247 QELISEDVGPGPSEESTADVPPEIDEYELV-------DPVDILTPLEK--SGFWEGVKATKWSERKDAVAELTKLASTKR 317 (1972)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~-------~~vdIl~kl~~--~~f~~~l~s~kWkeR~eaL~~L~~l~~~~k 317 (1972)
.....+ ....+..+++.++-.. ...+....... .++.+......|..|+.+...|..++...
T Consensus 318 ----~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~- 388 (888)
T d1qbkb_ 318 ----GDVEED----ETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY- 388 (888)
T ss_dssp ----TTSSCC----TTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTC-
T ss_pred ----hhhhhh----hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhh-
Confidence 000000 0000001111110000 00000000100 11122234477999999888776665321
Q ss_pred CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc
Q 000167 318 IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG 397 (1972)
Q Consensus 318 i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~ 397 (1972)
...-+..+++.+...+.+.+..++..|+.+++.++.+....+.+++..++|.++..+.|.++.||.++..++..+....
T Consensus 389 -~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 467 (888)
T d1qbkb_ 389 -RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 467 (888)
T ss_dssp -CSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHH
T ss_pred -HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 1223567888888889999999999999999999999988899999999999999999999999999998888766531
Q ss_pred -CC----ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 398 -CL----NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 398 -~~----~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
.. .+..+++.++..+.+.++.|+..++..|..+.+.... .+.++++.+++.+..++.+.+..++..+.++++++
T Consensus 468 ~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l 546 (888)
T d1qbkb_ 468 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT-ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTL 546 (888)
T ss_dssp HSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTT-SSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 11 2456888899999999999999999999988876654 35678899999999999999999999999999999
Q ss_pred HHHhCchhH-HHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCC
Q 000167 473 AKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAA 551 (1972)
Q Consensus 473 ~~~~ge~~~-~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~ 551 (1972)
...+|+... ..+++.+-+. +.+......
T Consensus 547 ~~~~~~~~~~~~~~~~l~~~----l~~~~~~~~----------------------------------------------- 575 (888)
T d1qbkb_ 547 ADSVGHHLNKPEYIQMLMPP----LIQKWNMLK----------------------------------------------- 575 (888)
T ss_dssp HHHHGGGGCSHHHHHHHHHH----HHHHHTTSC-----------------------------------------------
T ss_pred HHhhhccccchHHHHHHHHH----HHHHHHhcc-----------------------------------------------
Confidence 988886421 1222222111 111110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHh
Q 000167 552 PASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA 631 (1972)
Q Consensus 552 ~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~ 631 (1972)
+. .. . +...++.+...+
T Consensus 576 ---------------------------~~-----~~--~---------------------------~~~~le~l~~i~-- 592 (888)
T d1qbkb_ 576 ---------------------------DE-----DK--D---------------------------LFPLLECLSSVA-- 592 (888)
T ss_dssp ---------------------------TT-----CT--T---------------------------HHHHHHHHHHHH--
T ss_pred ---------------------------cc-----hH--H---------------------------HHHHHHHHHHHH--
Confidence 00 00 0 001111111111
Q ss_pred ccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHh
Q 000167 632 VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSE 711 (1972)
Q Consensus 632 ~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e 711 (1972)
..+.. ++..-...+.+..+.++..... .
T Consensus 593 ------------~~~~~--~~~~~~~~~~~~~~~~l~~~l~----------------------~---------------- 620 (888)
T d1qbkb_ 593 ------------TALQS--GFLPYCEPVYQRCVNLVQKTLA----------------------Q---------------- 620 (888)
T ss_dssp ------------HHSTT--TTHHHHHHHHHHHHHHHHHHHH----------------------H----------------
T ss_pred ------------HHhHH--HHhhhHHHHHHHHHHHHHHHHH----------------------H----------------
Confidence 11100 0100000111111111111000 0
Q ss_pred hcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 000167 712 AVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (1972)
Q Consensus 712 ~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~---~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~ 788 (1972)
.+...................++..++.+++.+|....+ ...+++.+..+ +.+.++.||.+|..+++.+..
T Consensus 621 -----~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~-l~~~~~~vr~~a~~llgdl~~ 694 (888)
T d1qbkb_ 621 -----AMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC-MQDKMPEVRQSSFALLGDLTK 694 (888)
T ss_dssp -----HHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHH-HTCSSHHHHHHHHHHHHHHHH
T ss_pred -----HHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHH-hCCCChHHHHHHHHHHHHHHH
Confidence 000000000011222333444555666666666643211 12356666666 899999999999999999999
Q ss_pred hhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHH
Q 000167 789 FVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWK 868 (1972)
Q Consensus 789 ~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk 868 (1972)
..++.+.+|+.++-|. +++.+.+..+.
T Consensus 695 ~~~~~~~~~l~~~~~~-----------------------------------------------------l~~~L~~~~~~ 721 (888)
T d1qbkb_ 695 ACFQHVKPCIADFMPI-----------------------------------------------------LGTNLNPEFIS 721 (888)
T ss_dssp HCGGGTGGGHHHHHHH-----------------------------------------------------HHHTCCGGGHH
T ss_pred hhhHHHHHHHHHHHHH-----------------------------------------------------HHHHhCcCCHH
Confidence 9888877776443332 33444555667
Q ss_pred HHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc--chHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhC
Q 000167 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946 (1972)
Q Consensus 869 ~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~ 946 (1972)
+|..|+..+..++...+..+.|.. ..++..|...+++ .+..|...++.++|.|+...+..+.+|+..+++.++..+.
T Consensus 722 v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~ 800 (888)
T d1qbkb_ 722 VCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR 800 (888)
T ss_dssp HHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhc
Confidence 888999999999876666677764 8899999999865 4566889999999999998888899999999999999997
Q ss_pred CC-cHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhc-CCCChhHHHHHHHHHH
Q 000167 947 DN-KKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTD-AKLGAEGRKDLFDWLS 998 (1972)
Q Consensus 947 D~-k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~-~~~~~~~R~~~l~~L~ 998 (1972)
+. ...-++.+..++..++..-+ +..-++.+..++.+ .+..++++....+.|.
T Consensus 801 ~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~ 856 (888)
T d1qbkb_ 801 NIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILH 856 (888)
T ss_dssp TSCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 63 23346777888888887643 33334455555542 2223555555555444
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=2.7e-11 Score=162.13 Aligned_cols=704 Identities=11% Similarity=0.103 Sum_probs=419.4
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCc--HHHHHHHHHHHHHHHHHhchh-------
Q 000167 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSN--APVQDKALDALIAYLKAADAD------- 86 (1972)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN--~~vqe~~leal~~~v~~~~~~------- 86 (1972)
|..-+.+.|=..|.+|-+.|.+..+. +.|. |...+.+++.|.| ..+...|.-.|-.++......
T Consensus 10 L~~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~---~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~ 82 (861)
T d2bpta1 10 LENSILSPDQNIRLTSETQLKKLSND----NFLQ---FAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHH----CHHH---HHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhc----CchH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHh
Confidence 44557789999999999999766542 2233 3445566665544 445454444333333211100
Q ss_pred -----hhh-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhh----hHHHHHHHHhhcCC-hhhHHHHHHHHHHH
Q 000167 87 -----AGR-YAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVD----VFLDVMEKAIKNKV-AKAVVPAIDVMFQA 155 (1972)
Q Consensus 87 -----~~~-~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~~----~v~~~L~~~~~~Kn-pKv~~~~l~~l~~~ 155 (1972)
... ....+-..++.-.....+.+|..+-.++-.++..+-++ .+++.|...+.+.+ +.++.+++.+|..+
T Consensus 83 ~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i 162 (861)
T d2bpta1 83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162 (861)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred hhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 000 01122233333322357889988888888877665442 57777777776544 56788899999999
Q ss_pred HHHhCCCccC----hhHHHHhhhhhh--cCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccC
Q 000167 156 LSEFGAKIIP----PKRILKMLPELF--DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG 229 (1972)
Q Consensus 156 l~~fG~~~~~----~k~il~~l~~ll--~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~ 229 (1972)
++.++...-. +.+++..+...+ .+.+..||..+..++..+..+++.. +.. ....+..+
T Consensus 163 ~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~-~~~---~~~~~~~~------------ 226 (861)
T d2bpta1 163 CESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-MER---EGERNYLM------------ 226 (861)
T ss_dssp HHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-HTS---HHHHHHHH------------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHh-HHh---hhhhhHHH------------
Confidence 8888764322 234555555444 4566889999888877776665431 100 00000000
Q ss_pred CCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHH
Q 000167 230 TARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL 309 (1972)
Q Consensus 230 ~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L 309 (1972)
.-+...+.+.+|+.|..+++.+
T Consensus 227 ----------------------------------------------------------~~l~~~~~~~~~~~~~~~~~~l 248 (861)
T d2bpta1 227 ----------------------------------------------------------QVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp ----------------------------------------------------------HHHHHHHTCSCHHHHHHHHHHH
T ss_pred ----------------------------------------------------------HhHHHHhcCCCHHHHHHHHHHH
Confidence 0122234556677888899888
Q ss_pred HHHhc-CCCCCCCChHHHHHH-HHHHhcccCHHHHHHHHHHHHHHHHHhhh-----------------chhhhhhhHHHH
Q 000167 310 TKLAS-TKRIAPGDFTEVCRT-LKKLITDVNIAVAVEAIQAIGNLARGLRT-----------------HFSGSSRFLLPV 370 (1972)
Q Consensus 310 ~~l~~-~~ki~~~~y~~l~~~-L~k~l~D~N~~V~~~A~~~l~~La~~L~~-----------------~f~~~~~~llp~ 370 (1972)
..++. .++........++.. +.....+.+..++..++..+..++..... -..++...++|.
T Consensus 249 ~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 328 (861)
T d2bpta1 249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN 328 (861)
T ss_dssp HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88774 232221112233333 33444588888999998888887754321 123456667777
Q ss_pred HHHHhccC-------cHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000167 371 LLEKLKEK-------KPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1972)
Q Consensus 371 LL~klkdk-------k~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (1972)
++..+.+. ...++.++..++..+... +..-+..+++.+...+.+.+|..|..++..+..+........+..+
T Consensus 329 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~ 408 (861)
T d2bpta1 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY 408 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHH
Confidence 77776432 346788888999888875 1122344556666677789999999999988888777776666778
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHH-HhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCC
Q 000167 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE-RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (1972)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~-~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (1972)
++.+++.+..++.|.++.||+++..+++.+...++..... .++..+ +.....
T Consensus 409 l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l-------l~~l~~-------------------- 461 (861)
T d2bpta1 409 VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV-------VQACLI-------------------- 461 (861)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH-------HHHHHH--------------------
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhh-------hHHHHh--------------------
Confidence 8999999999999999999999999999998877643110 001110 111110
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhcc
Q 000167 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (1972)
Q Consensus 522 s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l 601 (1972)
T Consensus 462 -------------------------------------------------------------------------------- 461 (861)
T d2bpta1 462 -------------------------------------------------------------------------------- 461 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcHHHHHhhhcCChHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC
Q 000167 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-----NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1972)
Q Consensus 602 l~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~-----~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (1972)
.+ +.+.+.+..+...+...+.... ........++..+.....-.+.+..+...+++++..++...+.
T Consensus 462 -------~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~ 533 (861)
T d2bpta1 462 -------GL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp -------HH-TSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred -------cc-ccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHH
Confidence 00 0011111111222222222110 0111111111111110011334445777788888888876654
Q ss_pred CchhhHHHHHHHHHhhhcch-----------------hhhHHHHHHHHHHHhhcCh------hHHHHHHHHhhhhCCChH
Q 000167 677 FPKKCVVLCLLGISERVADI-----------------KTRAHAMKCLTTFSEAVGP------GFIFERLYKIMKDHKNPK 733 (1972)
Q Consensus 677 ~~~~~~~~il~~LveKlgd~-----------------K~r~~a~~~L~~l~e~~~~------~~vl~~l~~~l~~~KnpK 733 (1972)
-....+..+++.+.+.+... .++..+..++..+.+..+. +.+++.++..+....++.
T Consensus 534 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 613 (861)
T d2bpta1 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF 613 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchh
Confidence 33334444444444333221 1123333445555554332 234555556555567788
Q ss_pred HHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHH
Q 000167 734 VLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1972)
Q Consensus 734 v~~e~l~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (1972)
++..++..+..++..+|....+ +..+++.+... +.+.++.||..|..+++.+.+..|..+.+|+.++-+.+++.+...
T Consensus 614 v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~-l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~ 692 (861)
T d2bpta1 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKA-LNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP 692 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH-HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH-hCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCC
Confidence 8999999999999888764222 35677888776 999999999999999999999999888888765555444433211
Q ss_pred HhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC
Q 000167 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892 (1972)
Q Consensus 813 fek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~ 892 (1972)
+.++.+|..++..+..++...+..+.+.
T Consensus 693 ---------------------------------------------------~~~~~~k~~~~~~l~~i~~~~~~~~~~~- 720 (861)
T d2bpta1 693 ---------------------------------------------------NARRELKPAVLSVFGDIASNIGADFIPY- 720 (861)
T ss_dssp ---------------------------------------------------TCCTTHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred ---------------------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 0122356677778888776544444443
Q ss_pred hhhHHHHHHhccc----cc-------hHHHHHHHHHHHHHHHHHcCh---hhHhhhhhHHHHHHHHhCCC----cHHHHH
Q 000167 893 TGELFGGLRGRLY----DS-------NKNLVMATLITLGAVASAMGP---AVEKSSKGVLSDILKCLGDN----KKHMRE 954 (1972)
Q Consensus 893 ~~eL~~~L~~~L~----Ds-------N~~V~~~Al~~l~~La~alg~---~~~~~~~~llp~ll~~L~D~----k~~Vr~ 954 (1972)
+.+++..+.+.+. +. ...++..++.++..+..+++. .+.+|+..+++.+...+.|. ...++.
T Consensus 721 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~ 800 (861)
T d2bpta1 721 LNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSR 800 (861)
T ss_dssp HHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHH
T ss_pred HHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHH
Confidence 2566666655442 21 123567778888888877653 36788888887777777664 456778
Q ss_pred HHHHHHHHHHHhcC
Q 000167 955 CTLTVLDAWLAAVH 968 (1972)
Q Consensus 955 Aa~~aL~~i~~~~~ 968 (1972)
++..+++.++..+|
T Consensus 801 ~~~~~i~~l~~~~~ 814 (861)
T d2bpta1 801 AAVGLIGDIAAMFP 814 (861)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCc
Confidence 88899999988876
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.6e-10 Score=153.12 Aligned_cols=749 Identities=13% Similarity=0.107 Sum_probs=409.3
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCc--HHHHHHHHHHHHHHHHHhchh-------
Q 000167 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSN--APVQDKALDALIAYLKAADAD------- 86 (1972)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN--~~vqe~~leal~~~v~~~~~~------- 86 (1972)
+.+...|.|=..|.+|-+.|.+.... +.|.| ...+...+.|.+ ..+...|.-.|-.++......
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~f---~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~ 78 (876)
T d1qgra_ 6 ILEKTVSPDRLELEAAQKFLERAAVE----NLPTF---LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (876)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHhc----ChhHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhc
Confidence 45667788999999999999877643 12333 444455554443 345555555555544321110
Q ss_pred ----hhh-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHH
Q 000167 87 ----AGR-YAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQA 155 (1972)
Q Consensus 87 ----~~~-~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~l~~~ 155 (1972)
... ....+-..++. ++.+....+..+.+++..++..+-| ..+++.|...+.+. ++.++.+++.+|..+
T Consensus 79 ~~~~i~~~~k~~ik~~ll~-~l~~~~~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i 157 (876)
T d1qgra_ 79 RWLAIDANARREVKNYVLH-TLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHHTSCHHHHHHHHHHHHH-HTTTCCSSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 000 11223333333 2332222333344555555544322 24677777666543 356777888888888
Q ss_pred HHHhCCCccC--hhHHHHhhhhhhcCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCC
Q 000167 156 LSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (1972)
Q Consensus 156 l~~fG~~~~~--~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (1972)
...++...+. ...+++.+...+.+. +..||..+...+..+..++... . . .......
T Consensus 158 ~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~-----~-~--~~~~~~~------------ 217 (876)
T d1qgra_ 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-----F-D--KESERHF------------ 217 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH-----H-T--SHHHHHH------------
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhh-----h-h--HHHHHHH------------
Confidence 7776653321 344666666666443 4567777666554444333210 0 0 0000000
Q ss_pred CCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHH
Q 000167 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK 311 (1972)
Q Consensus 232 ~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~ 311 (1972)
| . ..+...+.+.+|+.|+.+++.+..
T Consensus 218 -------------------------------------------------i----~-~~l~~~~~~~~~~v~~~~~~~l~~ 243 (876)
T d1qgra_ 218 -------------------------------------------------I----M-QVVCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp -------------------------------------------------H----H-HHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -------------------------------------------------H----H-HHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 0 112223345667888889988888
Q ss_pred Hhc-CCCCCCCC-hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh--------------------c-hhhhhhhHH
Q 000167 312 LAS-TKRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT--------------------H-FSGSSRFLL 368 (1972)
Q Consensus 312 l~~-~~ki~~~~-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~--------------------~-f~~~~~~ll 368 (1972)
++. .+...... ...+...+...+.+.+..++..++..+..++..... . ...+...++
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (876)
T d1qgra_ 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (876)
T ss_dssp HHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 774 33322111 123555566667777778888888877777652211 0 113344555
Q ss_pred HHHHHHhc-------cCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000167 369 PVLLEKLK-------EKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1972)
Q Consensus 369 p~LL~klk-------dkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (1972)
|.+...+. +....++.++..++..+... +..-++.+++.+...+.+.+|..|..++..+..+........+.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~ 403 (876)
T d1qgra_ 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 66555543 23345888999999988876 22235567777778888999999999988888776666666677
Q ss_pred HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHH-HhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCC
Q 000167 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE-RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519 (1972)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~-~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~ 519 (1972)
.++..+++.+...+.|.++.||.+|..+++.+...+++.... .++..+-+ .+...+..
T Consensus 404 ~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~----~l~~~l~~----------------- 462 (876)
T d1qgra_ 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ----CLIEGLSA----------------- 462 (876)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHH----HHHHHTTS-----------------
T ss_pred HHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHH----HHHHHhcC-----------------
Confidence 788999999999999999999999999999999887753211 11111110 11111100
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhh
Q 000167 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLG 599 (1972)
Q Consensus 520 ~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~ 599 (1972)
T Consensus 463 -------------------------------------------------------------------------------- 462 (876)
T d1qgra_ 463 -------------------------------------------------------------------------------- 462 (876)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhc---------------cccchh----HHHHHHHHhcCCCCccchHHHH
Q 000167 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAV---------------QNLDQS----VEILVRLVCMLPGWSEKNVQVQ 660 (1972)
Q Consensus 600 ~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~---------------~~~~~~----~~~lv~~L~~~p~~~DsN~qV~ 660 (1972)
+++.+..+...+..+.... ...... ...+...+.. ....+..+.
T Consensus 463 --------------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~---~~~~~~~~~ 525 (876)
T d1qgra_ 463 --------------EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR---PDGHQNNLR 525 (876)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTS---CSSCSTTHH
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hccccHhHH
Confidence 0000000000000000000 000001 1122222211 111222345
Q ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCCh----HHHH
Q 000167 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP----KVLS 736 (1972)
Q Consensus 661 ~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~Knp----Kv~~ 736 (1972)
..+++.+..++..........+..+++.+++.+... ...... ....... +.+.
T Consensus 526 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------l~~~~~----------~~~~~~~~~~~~~~~ 582 (876)
T d1qgra_ 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQV-------------LQMESH----------IQSTSDRIQFNDLQS 582 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHH-------------HTTTTS----------CCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-------------HHHhhh----------hcchhhhHHHHHHHH
Confidence 556666666665443333334444444444332210 000000 0000000 1111
Q ss_pred HHHHHHHHHHHHhCCCCC--ChhhHHHHHHhcCCC--CCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHH
Q 000167 737 EGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQ--SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1972)
Q Consensus 737 e~l~~L~~~i~~fG~~~l--~~k~li~~l~~~gL~--~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (1972)
-.+.++..++...|.... ....++..+... +. ..+..||..+..+++.+...+|..+..|+..+-|.++..+..
T Consensus 583 ~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~-l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~- 660 (876)
T d1qgra_ 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN- 660 (876)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcchhhhhhhHHHHHHHHHHH-HhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhC-
Confidence 122233333332222110 123455555444 44 345679999999999999999998888876666655554432
Q ss_pred HhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC
Q 000167 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892 (1972)
Q Consensus 813 fek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~ 892 (1972)
..++.+|..|+..+..+.......+.+.
T Consensus 661 ---------------------------------------------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~- 688 (876)
T d1qgra_ 661 ---------------------------------------------------YAEYQVCLAAVGLVGDLCRALQSNIIPF- 688 (876)
T ss_dssp ---------------------------------------------------CTTHHHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred ---------------------------------------------------CCcHHHHHHHHHHHHHHHHHhHHhhhhh-
Confidence 1135678888888888876554555554
Q ss_pred hhhHHHHHHhccccch--HHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc----H-------HHHHHHHHH
Q 000167 893 TGELFGGLRGRLYDSN--KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK----K-------HMRECTLTV 959 (1972)
Q Consensus 893 ~~eL~~~L~~~L~DsN--~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k----~-------~Vr~Aa~~a 959 (1972)
..+++..|...++|.+ ..+...++.+++.|+..+|..|.+|+..+++.+...+...- . .+|+++..|
T Consensus 689 ~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 768 (876)
T d1qgra_ 689 CDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEA 768 (876)
T ss_dssp HHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHH
Confidence 3788888888887654 56888999999999999999999999999999988776321 1 256677666
Q ss_pred HHHHHHhcC------------chhhHHHHHHHH----hcCCCChhHHHHHHHHHHHHhccCCCC--CCh--hhhHHH-HH
Q 000167 960 LDAWLAAVH------------LDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSGF--PDA--AHLLKP-AS 1018 (1972)
Q Consensus 960 L~~i~~~~~------------l~~ll~~l~~~L----~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~--~~ll~p-l~ 1018 (1972)
...++..+. +...++.+...+ .+...+...+..+++.+.......+.. ..+ .+.+.+ +.
T Consensus 769 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~ 848 (876)
T d1qgra_ 769 YTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLT 848 (876)
T ss_dssp HHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 666654321 122223333222 223334556666665555444444331 111 134444 44
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHH
Q 000167 1019 IAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
.+..+.+.+.|..|.-+...+.+
T Consensus 849 ~~~~s~~~~~~~~a~~~~~~~~~ 871 (876)
T d1qgra_ 849 EGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH
Confidence 46777888888888777666544
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.1e-09 Score=147.01 Aligned_cols=641 Identities=14% Similarity=0.130 Sum_probs=360.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhh-chhhhhhhHHHHHHHHhc
Q 000167 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRT-HFSGSSRFLLPVLLEKLK 376 (1972)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~-~f~~~~~~llp~LL~klk 376 (1972)
..|+.+...+..++.. .+..+.+.++++.|...+. |.+..+...++.+++.+++.+.. .+..+...+++.++..+.
T Consensus 104 ~~~~~~a~~i~~i~~~-~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~ 182 (876)
T d1qgra_ 104 YRPSSASQCVAGIACA-EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR 182 (876)
T ss_dssp SSSCHHHHHHHHHHHH-HGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH-HCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHc
Confidence 4455556666666532 1223456778888888875 66677888899999999998864 577899999999999885
Q ss_pred c--CcHHHHHHHHHHHHHHHHhc----CC-C-hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHH
Q 000167 377 E--KKPTVAESLTQTLQAMHKAG----CL-N-LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYV 447 (1972)
Q Consensus 377 d--kk~~V~~aa~~aL~al~~~~----~~-~-l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~ 447 (1972)
+ ....++.++..++..++... .. . ...+++.+...+++.++.+|..++..+..++...+.. +.+++ +.+.
T Consensus 183 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~~~~~l~ 261 (876)
T d1qgra_ 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY-METYMGPALF 261 (876)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG-CHHHHTTTHH
T ss_pred CcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHH
Confidence 4 45678888877777665431 00 0 1236666777888999999999999999988876543 33333 5577
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCC
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE 527 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~ 527 (1972)
+.+...+.+.+.+++..+.+.+..+...... .... ..+...... .+........ ..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~---------~~~~~~~~~--~~~~~~~~~~---------~~ 317 (876)
T d1qgra_ 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMD----LAIE---------ASEAAEQGR--PPEHTSKFYA---------KG 317 (876)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHSS--CCSSCCCCHH---------HH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHH----HHHH---------hhHHHHhhh--hHHHHHHHHH---------HH
Confidence 7788889999999999888877665543221 1111 011111100 0000000000 00
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHHhhc---
Q 000167 528 ASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE----IESRLGS--- 600 (1972)
Q Consensus 528 ~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee----~e~~~~~--- 600 (1972)
........-... ... .+ ++......+... +-..+..
T Consensus 318 -~~~~l~~~l~~~-~~~---------------------------------~~--~~~~~~~~~~~~~a~~~l~~l~~~~~ 360 (876)
T d1qgra_ 318 -ALQYLVPILTQT-LTK---------------------------------QD--ENDDDDDWNPCKAAGVCLMLLATCCE 360 (876)
T ss_dssp -HHHHHHHHHHHH-TTC---------------------------------CC--SSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred -HHHHHHHhhHHH-HHh---------------------------------cc--cccccccchHHHHHHHHHHHHHHHhh
Confidence 000000000000 000 00 000011112211 1111111
Q ss_pred -----cCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccc--cchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHH
Q 000167 601 -----LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT 673 (1972)
Q Consensus 601 -----ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~--~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~ 673 (1972)
.+-+-+...+.+.+|+.|.+++..+.....+... .......++..+. +.+.|.+..|...++.++..+++.
T Consensus 361 ~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~--~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI--ELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH--HHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH--HhhcCCccHHHHHHHHHHHHHHHH
Confidence 1124456778899999999999988876554221 1122233333332 256889999999999999999886
Q ss_pred cCC--CchhhHHHHHHHHHhhhcch-hhhHHHHHHHHHHHhhcC--------------------hhHHHHHHHHhhh--h
Q 000167 674 ATK--FPKKCVVLCLLGISERVADI-KTRAHAMKCLTTFSEAVG--------------------PGFIFERLYKIMK--D 728 (1972)
Q Consensus 674 ~~~--~~~~~~~~il~~LveKlgd~-K~r~~a~~~L~~l~e~~~--------------------~~~vl~~l~~~l~--~ 728 (1972)
.+. .....+..+++.++..+.+. +++..+..++..+++... .+.++..++..+. .
T Consensus 439 ~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~ 518 (876)
T d1qgra_ 439 LPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD 518 (876)
T ss_dssp CGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS
T ss_pred cchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 543 23445777888888888774 567777777777766421 1123333333321 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChh-------HHhhhhcc
Q 000167 729 HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD-------IKGFLADV 801 (1972)
Q Consensus 729 ~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~-------l~~~L~~l 801 (1972)
..+..++..++..+..++....... .+.+......++..+...+... .......+
T Consensus 519 ~~~~~~~~~~~~~l~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 580 (876)
T d1qgra_ 519 GHQNNLRSSAYESLMEIVKNSAKDC------------------YPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDL 580 (876)
T ss_dssp SCSTTHHHHHHHHHHHHHHTCCSTT------------------HHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHH
T ss_pred cccHhHHHHHHHHHHHhhhhhhhHH------------------HHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHH
Confidence 2345566666666666554332211 1111111111111111111100 00000000
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcC--CCCHHHHHHHHHHHHH
Q 000167 802 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE--SPDWKVRLESIEAVNK 879 (1972)
Q Consensus 802 kp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~--d~~Wk~R~eale~l~~ 879 (1972)
...+...+...+.+...+. . ..+...+.+.++..+. +.++..|..++..+..
T Consensus 581 ~~~l~~~l~~~~~~~~~~~-----------------------~---~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~ 634 (876)
T d1qgra_ 581 QSLLCATLQNVLRKVQHQD-----------------------A---LQISDVVMASLLRMFQSTAGSGGVQEDALMAVST 634 (876)
T ss_dssp HHHHHHHHHHHHTTSCHHH-----------------------H---HTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchhh-----------------------h---hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 1111111111111110000 0 0001112222333332 2356778888888888
Q ss_pred HHHHccccCCCCChhhHHHHHHhccccc-hHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc--HHHHHHH
Q 000167 880 ILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECT 956 (1972)
Q Consensus 880 ll~~a~~~I~~~~~~eL~~~L~~~L~Ds-N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k--~~Vr~Aa 956 (1972)
++......+.+. +..+++.|...+.+. +..++..|+.+++.++..++..+.+|+..+++.++..+.+.. ..++.++
T Consensus 635 l~~~~~~~~~~~-l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~ 713 (876)
T d1qgra_ 635 LVEVLGGEFLKY-MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQI 713 (876)
T ss_dssp HHHHHGGGGGGG-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHH
T ss_pred HHHHcchhhHHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHH
Confidence 886544444444 478888888888654 467999999999999999999999999999999999998754 5799999
Q ss_pred HHHHHHHHHhcC--chhhHHHHHH----HHhcC--CCCh-------hHHHHHHHHHHHHhccC---CC--C---CChhhh
Q 000167 957 LTVLDAWLAAVH--LDKMVPYVTT----ALTDA--KLGA-------EGRKDLFDWLSKQLTGL---SG--F---PDAAHL 1013 (1972)
Q Consensus 957 ~~aL~~i~~~~~--l~~ll~~l~~----~L~~~--~~~~-------~~R~~~l~~L~~~l~~~---~~--~---~~~~~l 1013 (1972)
..|+..++..+| ...+++.+.+ ++... ..+. .+|..++......+... .. . ..+.+.
T Consensus 714 ~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 793 (876)
T d1qgra_ 714 LSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPR 793 (876)
T ss_dssp HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGG
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 999999999887 2344444444 43311 1011 13444444433333221 11 1 112333
Q ss_pred HHHHHh---h---cCCCCHHHHHHHHHHHHHHHHHcChhHHHH
Q 000167 1014 LKPASI---A---MTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1972)
Q Consensus 1014 l~pl~~---~---L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~ 1050 (1972)
+.+++. . -.+.+.+++..|..+++.+...+|.+....
T Consensus 794 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~ 836 (876)
T d1qgra_ 794 VEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKL 836 (876)
T ss_dssp HHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344332 2 257788999999999999999999865443
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.6e-07 Score=114.98 Aligned_cols=382 Identities=11% Similarity=0.053 Sum_probs=242.4
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHH-----------
Q 000167 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT----------- 673 (1972)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~----------- 673 (1972)
.+++++.+.|=..|.+|-+.|.++.....+ .....+...+.. .+....+...+.-.++..+..
T Consensus 4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~~~--~~~~~l~~il~~----~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~ 77 (458)
T d1ibrb_ 4 TILEKTVSPDRLELEAAQKFLERAAVENLP--TFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 77 (458)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcCch--HHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence 466788889999999999999888765211 123344444431 111223444444444433321
Q ss_pred -cCCCchhhHHHHHHHHHhhhcchh-hhHHHHHHHHHHHhhcChh----HHHHHHHHhhhh-CCChHHHHHHHHHHHHHH
Q 000167 674 -ATKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSEAVGPG----FIFERLYKIMKD-HKNPKVLSEGILWMVSAV 746 (1972)
Q Consensus 674 -~~~~~~~~~~~il~~LveKlgd~K-~r~~a~~~L~~l~e~~~~~----~vl~~l~~~l~~-~KnpKv~~e~l~~L~~~i 746 (1972)
...+.......+...++.-+.+.. .+..+..++..++....+. .+++.++..+.. ..++.++..++..+..+.
T Consensus 78 ~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 157 (458)
T d1ibrb_ 78 RWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 157 (458)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 112333444556666777666632 2223345555565543322 356666665532 456778888888888888
Q ss_pred HHhCCCCC--ChhhHHHHHHhcCCC--CCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCC
Q 000167 747 EDFGVSHL--KLKDLIDFCKDTGLQ--SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1972)
Q Consensus 747 ~~fG~~~l--~~k~li~~l~~~gL~--~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~ 822 (1972)
...+.... ....++..+... +. +.+..||.+|.++++.+..+....... ...
T Consensus 158 ~~~~~~~~~~~~~~il~~~~~~-l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~------~~~----------------- 213 (458)
T d1ibrb_ 158 QDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDK------ESE----------------- 213 (458)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS------HHH-----------------
T ss_pred hhccchhhhhhHHHHHHHHHHH-hcccccCHHHHHHHHHHHHHHHHhhhhhhhh------HHH-----------------
Confidence 76554322 234456655543 54 456789999999988876543221110 000
Q ss_pred CCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHh
Q 000167 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1972)
Q Consensus 823 ~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~ 902 (1972)
...+.+-+...+.+.+|+.|..+++.+..++......+.+....-+...+..
T Consensus 214 ----------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~ 265 (458)
T d1ibrb_ 214 ----------------------------RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 265 (458)
T ss_dssp ----------------------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred ----------------------------HHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 0012233445567789999999999999999866556666542334455566
Q ss_pred ccccchHHHHHHHHHHHHHHHHHcCh---------------------hhHhhhhhHHHHHHHHhC-------CCcHHHHH
Q 000167 903 RLYDSNKNLVMATLITLGAVASAMGP---------------------AVEKSSKGVLSDILKCLG-------DNKKHMRE 954 (1972)
Q Consensus 903 ~L~DsN~~V~~~Al~~l~~La~alg~---------------------~~~~~~~~llp~ll~~L~-------D~k~~Vr~ 954 (1972)
.+.+.+..++..|+..+..++..... ....+...+.|.+...+. |....+|.
T Consensus 266 ~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 345 (458)
T d1ibrb_ 266 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 345 (458)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHH
Confidence 66788888999999988888753211 123455667777777664 33446999
Q ss_pred HHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCCHHH
Q 000167 955 CTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDV 1028 (1972)
Q Consensus 955 Aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dV 1028 (1972)
++..++..++...| +..+++.+...+.++ +|..|..++..|......... .+.+..++..++.+++|.++.|
T Consensus 346 ~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~--~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~V 423 (458)
T d1ibrb_ 346 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 423 (458)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999887 344556666666665 689999888888765544322 2344556666999999999999
Q ss_pred HHHHHHHHHHHHHHcChh
Q 000167 1029 RKAAEACIVEILRAGGQE 1046 (1972)
Q Consensus 1029 R~aA~~~l~~l~~~~G~~ 1046 (1972)
|.+|..|++.+...+++.
T Consensus 424 R~~a~~~l~~i~~~~~~~ 441 (458)
T d1ibrb_ 424 RDTAAWTVGRICELLPEA 441 (458)
T ss_dssp HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999888764
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=3e-07 Score=112.44 Aligned_cols=382 Identities=13% Similarity=0.087 Sum_probs=239.3
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCc--HHHHHHHHHHHHHHHHHhchh-------
Q 000167 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSN--APVQDKALDALIAYLKAADAD------- 86 (1972)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN--~~vqe~~leal~~~v~~~~~~------- 86 (1972)
+.+.+.+.|=..|.+|-+.|.+.+.. +.|.| ...+...+.|.| ..+...|.-.|..++......
T Consensus 5 il~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~---~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~ 77 (458)
T d1ibrb_ 5 ILEKTVSPDRLELEAAQKFLERAAVE----NLPTF---LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 77 (458)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHhc----CchHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence 55777888999999999999887753 12343 333344444433 445555555555555332110
Q ss_pred ----hh-hhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhc--CChhhHHHHHHHHHHH
Q 000167 87 ----AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKN--KVAKAVVPAIDVMFQA 155 (1972)
Q Consensus 87 ----~~-~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~--KnpKv~~~~l~~l~~~ 155 (1972)
.. .....+...+++-.....+..+ .+..++..++..+.+ ..+++.|...+.+ .++.++..++.++..+
T Consensus 78 ~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 156 (458)
T d1ibrb_ 78 RWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 156 (458)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 00 1123344555544222222222 333444444443322 3567777776654 4567778888888888
Q ss_pred HHHhCCCcc--ChhHHHHhhhhhhcC--CChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCC
Q 000167 156 LSEFGAKII--PPKRILKMLPELFDH--QDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (1972)
Q Consensus 156 l~~fG~~~~--~~k~il~~l~~ll~~--~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (1972)
....+.... ....+++.+...+.+ .+..||..|...+..++.+.... . . .......+
T Consensus 157 ~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~-----~-~--~~~~~~~~----------- 217 (458)
T d1ibrb_ 157 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-----F-D--KESERHFI----------- 217 (458)
T ss_dssp HHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH-----H-T--SHHHHHHH-----------
T ss_pred HhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh-----h-h--hHHHHHHh-----------
Confidence 776665433 245688888888864 45678988877766665443211 0 0 00000000
Q ss_pred CCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHH
Q 000167 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK 311 (1972)
Q Consensus 232 ~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~ 311 (1972)
. .-+...+.+.+|+.|..+++.|..
T Consensus 218 ------------------------------------------------------~-~~l~~~~~~~~~~~~~~~~~~l~~ 242 (458)
T d1ibrb_ 218 ------------------------------------------------------M-QVVCEATQCPDTRVRVAALQNLVK 242 (458)
T ss_dssp ------------------------------------------------------H-HHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------H-hhHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 112223455678888999999988
Q ss_pred Hhc-CCCCCCCChHH-HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc---------------------hhhhhhhHH
Q 000167 312 LAS-TKRIAPGDFTE-VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH---------------------FSGSSRFLL 368 (1972)
Q Consensus 312 l~~-~~ki~~~~y~~-l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~---------------------f~~~~~~ll 368 (1972)
++. .++.......+ +...+...+.+.+..++..|+.++..++...... +..+...++
T Consensus 243 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (458)
T d1ibrb_ 243 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 322 (458)
T ss_dssp HHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 773 33332222222 3344455566778888999999998887643211 123455566
Q ss_pred HHHHHHhc-------cCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000167 369 PVLLEKLK-------EKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1972)
Q Consensus 369 p~LL~klk-------dkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (1972)
|.+.+.+. +....++.++..++..+... +...++.+++.+...+++.+|.+|..++..|..+.+.+.+..+.
T Consensus 323 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~ 402 (458)
T d1ibrb_ 323 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 402 (458)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTC
T ss_pred hhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHH
Confidence 66666543 33346889999999999876 22235677788888899999999999998888776655554455
Q ss_pred HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCch
Q 000167 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1972)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~ 479 (1972)
.+++.++|.+..+++|+++.||.+|..|++.+...+++.
T Consensus 403 ~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~ 441 (458)
T d1ibrb_ 403 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441 (458)
T ss_dssp TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 678999999999999999999999999999999998864
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=1.9e-05 Score=95.89 Aligned_cols=375 Identities=11% Similarity=0.113 Sum_probs=223.5
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhcccc--ch-----hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--DQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~--~~-----~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (1972)
+++++.|.|.|-..+..|+..+.+.+...... +. ....++++|. +..+..|+..++.+|..++.....
T Consensus 16 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~~v~~~a~~~L~~la~~~~~ 90 (434)
T d1q1sc_ 16 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 90 (434)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTT-----CGGGHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHc-----cCCCHHHHHHHHHHHHHHhcCChh
Confidence 56788999999999999999999887542221 11 1334555542 234567888888888887742111
Q ss_pred CchhhH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh--h-----HHHHHHHHhhhhCCChHHHHHHHHHHHHHH
Q 000167 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--G-----FIFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1972)
Q Consensus 677 ~~~~~~-~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~--~-----~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i 746 (1972)
.....+ ..+++.++..+.+ ..++..+..+|..++..... . ..+..++..+............+..+...+
T Consensus 91 ~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l 170 (434)
T d1q1sc_ 91 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 170 (434)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred hhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHH
Confidence 111111 2357777777765 36788888888888753211 1 123334444322222221112222222222
Q ss_pred HHhCCC--C-C---ChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCC
Q 000167 747 EDFGVS--H-L---KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1972)
Q Consensus 747 ~~fG~~--~-l---~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~ 820 (1972)
...... . . ....+++.+..+ +.+.++.+|..|..++..+..... .. ...+ ..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~-~~-----------~~~~----~~----- 228 (434)
T d1q1sc_ 171 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPN-ER-----------IEMV----VK----- 228 (434)
T ss_dssp HHHTCCCTTCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSCH-HH-----------HHHH----HT-----
T ss_pred HHHhhcccccchhhhhhhHHHHHHHH-HhccccchhhhHHhhhcccchhhh-hh-----------HHHH----hh-----
Confidence 222111 1 1 134577778787 999999999999888776642211 00 0000 00
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC-hhhHHHH
Q 000167 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 899 (1972)
Q Consensus 821 ~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~-~~eL~~~ 899 (1972)
..+.+.+++.+.+.++..+..++..+..++... ....... -..++..
T Consensus 229 -------------------------------~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~-~~~~~~~~~~~~~~~ 276 (434)
T d1q1sc_ 229 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 276 (434)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------cccchhcccccccchhhhhhchhhhhhhHHhhh-hHHHHHHHhccccch
Confidence 002345667778889999999999888776421 1111000 0234556
Q ss_pred HHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------
Q 000167 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 970 (1972)
Q Consensus 900 L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~-------- 970 (1972)
|...+.+.+..++..|+.++..++..-........ ..++|.++..+.+....++..|..++..+....+.+
T Consensus 277 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~ 356 (434)
T d1q1sc_ 277 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 356 (434)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 77778888889999999999988753222122222 347899999999999999999999999988776522
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc---CCCCCChhhh------HHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 971 ~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~---~~~~~~~~~l------l~pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
.+++.+...+... ++..+..++..+...+.. .+........ +..|-...++.+.+||+.|.+.+..+
T Consensus 357 ~~i~~L~~ll~~~--d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 357 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp TCHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2467788888765 678888877776655432 2221111111 11132234788999999998887654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.14 E-value=0.00029 Score=85.03 Aligned_cols=383 Identities=13% Similarity=0.078 Sum_probs=236.4
Q ss_pred cCCChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHh--hhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhh
Q 000167 12 KKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRE--LGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAG 88 (1972)
Q Consensus 12 ~~lpl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~--~~~~~~k~v~D-sN~~vqe~~leal~~~v~~~~~~~~ 88 (1972)
+=-++...+.|.+-..+.+|...+.+.+....++.-..+.+ ..+.+.+++.+ .|+.+|..++.+|..+...... ..
T Consensus 14 ~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~-~~ 92 (434)
T d1q1sc_ 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE-QT 92 (434)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHH-HH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChh-hh
Confidence 33456788999999999999999998875422211112322 23445566654 5788999999998887643322 22
Q ss_pred hh--hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-h-h-----hhHHHHHHHHhhcCChh-hHHHHHHHHHHHHHH
Q 000167 89 RY--AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-A-V-----DVFLDVMEKAIKNKVAK-AVVPAIDVMFQALSE 158 (1972)
Q Consensus 89 ~~--~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~-~-~-----~~v~~~L~~~~~~KnpK-v~~~~l~~l~~~l~~ 158 (1972)
.. -..+++.++.-.-+..+.+++.|..++..++.-. . . ...++.|+..+.+.+.. .....+..+...+..
T Consensus 93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 172 (434)
T d1q1sc_ 93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 172 (434)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 22 2347788887633357889999988887776421 1 1 23345566655544332 112222222222222
Q ss_pred h--CC-Ccc---ChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCC
Q 000167 159 F--GA-KII---PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTAR 232 (1972)
Q Consensus 159 f--G~-~~~---~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~ 232 (1972)
. +. ... ....+++.+..++.+.|..||..+..++..+...-. . ....+ .
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~-----~---------~~~~~----~------- 227 (434)
T d1q1sc_ 173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN-----E---------RIEMV----V------- 227 (434)
T ss_dssp HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-----H---------HHHHH----H-------
T ss_pred HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhh-----h---------hHHHH----h-------
Confidence 2 21 111 235688999999999999999988766554431110 0 00000 0
Q ss_pred CCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHH
Q 000167 233 PTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312 (1972)
Q Consensus 233 P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l 312 (1972)
. .+ + - +.+.+.+.+.++..+..++..|..+
T Consensus 228 -------------------~---~~------------~---------------~-~~Lv~ll~~~~~~~~~~al~~l~~l 257 (434)
T d1q1sc_ 228 -------------------K---KG------------V---------------V-PQLVKLLGATELPIVTPALRAIGNI 257 (434)
T ss_dssp -------------------T---TT------------C---------------H-HHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred -------------------h---cc------------c---------------c-hhcccccccchhhhhhchhhhhhhH
Confidence 0 00 0 0 2345556777888888888888887
Q ss_pred hcCC-CCCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh-hhHHHHHHHHhccCcHHHHHHHHHH
Q 000167 313 ASTK-RIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAESLTQT 389 (1972)
Q Consensus 313 ~~~~-ki~~~~y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~llp~LL~klkdkk~~V~~aa~~a 389 (1972)
+.+. .....-+ ..++..|...+.+.+..+...|+.++..++..-........ ..++|.++..+.+....++..+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~ 337 (434)
T d1q1sc_ 258 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 337 (434)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHH
Confidence 6422 1000000 12344567778888888999999999999864332222222 3478999999999999999999999
Q ss_pred HHHHHHhcCCChH--------hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc---C-hhHHHHhhh--hHHHHHHHHhc
Q 000167 390 LQAMHKAGCLNLV--------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS---S-KAAVLKVHK--DYVPICMECLN 455 (1972)
Q Consensus 390 L~al~~~~~~~l~--------~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~---~-~~~l~~~l~--~l~p~l~k~l~ 455 (1972)
+..+..+ .+.+ .+++.+...++.+++.++..++..+..++... + ...+...+. .+++.+-...+
T Consensus 338 l~nl~~~--~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~ 415 (434)
T d1q1sc_ 338 ITNYTSG--GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 415 (434)
T ss_dssp HHHHHHH--SCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHT
T ss_pred HHHHHhc--CCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHc
Confidence 9988876 2222 24677888899999999999998888877532 1 112222222 24566767789
Q ss_pred CCChHHHHHHHHHHHHH
Q 000167 456 DGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 456 Ds~~~VR~aA~~~l~~l 472 (1972)
+.+++||+.|.+.+..+
T Consensus 416 ~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 416 HENESVYKASLNLIEKY 432 (434)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998887654
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.08 E-value=0.00051 Score=85.11 Aligned_cols=379 Identities=11% Similarity=0.063 Sum_probs=241.0
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHh--hhhhhHhhhc-CCcHHHHHHHHHHHHHHHHHhchhhhhh--h
Q 000167 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRE--LGPLFKKTVA-DSNAPVQDKALDALIAYLKAADADAGRY--A 91 (1972)
Q Consensus 17 ~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~--~~~~~~k~v~-DsN~~vqe~~leal~~~v~~~~~~~~~~--~ 91 (1972)
...+.+.+-..++.|...+.+.+.....+.-..+.+ ..+.+.+++. +.|..+|..++.+|..+...... .... -
T Consensus 82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~-~~~~~~~ 160 (503)
T d1wa5b_ 82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVVD 160 (503)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHh
Confidence 455677788889999999988874322111111211 2344445554 77889999999988776543221 2221 1
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-h-h-----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC--
Q 000167 92 KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-A-V-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK-- 162 (1972)
Q Consensus 92 ~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~-~-~-----~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~-- 162 (1972)
..+++.++.-.-+....+++.|..++..++... . . ..+++.|...+.+.++.++..++.+|..+.......
T Consensus 161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~ 240 (503)
T d1wa5b_ 161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 240 (503)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchH
Confidence 235666666643468889999988888776432 1 1 134566777788889999888888888776543321
Q ss_pred ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhh
Q 000167 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (1972)
Q Consensus 163 ~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (1972)
......+++.+..++.+.|..++..+..++..+..+-. ... ..+ ++
T Consensus 241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~-----~~~---------~~~---~~----------------- 286 (503)
T d1wa5b_ 241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-----EAI---------QAV---ID----------------- 286 (503)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-----HHH---------HHH---HH-----------------
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCc-----hhh---------hhh---hh-----------------
Confidence 11245689999999999999999887666544432110 000 000 00
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCC-CC
Q 000167 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIA-PG 321 (1972)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~-~~ 321 (1972)
. + + . +.+...+.+.++..+..++..|..++.+..-. ..
T Consensus 287 -----------~--~-----------------------~----~-~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~ 325 (503)
T d1wa5b_ 287 -----------V--R-----------------------I----P-KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQV 325 (503)
T ss_dssp -----------T--T-----------------------C----H-HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred -----------h--h-----------------------h----h-hhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHh
Confidence 0 0 0 1 23445567778888888888888877432100 00
Q ss_pred -ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC
Q 000167 322 -DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (1972)
Q Consensus 322 -~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~ 399 (1972)
--..+++.|...+.+.+..++..++.++..++.+-....... -..++|.++..+......|+..+..++..+..++..
T Consensus 326 ~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~ 405 (503)
T d1wa5b_ 326 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ 405 (503)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT
T ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccc
Confidence 012356778888888888999999999999876432222222 246889999999988999999999999988876211
Q ss_pred Ch--------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh---------hHHHHhhh--hHHHHHHHHhcCCChH
Q 000167 400 NL--------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK---------AAVLKVHK--DYVPICMECLNDGTPE 460 (1972)
Q Consensus 400 ~l--------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~---------~~l~~~l~--~l~p~l~k~l~Ds~~~ 460 (1972)
.. ..+++.++..++.+++.+...++..|..++..... ..+...+. ..+..|-.+.++.+.+
T Consensus 406 ~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~ 485 (503)
T d1wa5b_ 406 RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDK 485 (503)
T ss_dssp CTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHH
T ss_pred cHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 11 12456677888889999999999998887753211 00111111 1344566667889999
Q ss_pred HHHHHHHHHHH
Q 000167 461 VRDAAFSVLAA 471 (1972)
Q Consensus 461 VR~aA~~~l~~ 471 (1972)
|++.|.+.+..
T Consensus 486 i~~~A~~il~~ 496 (503)
T d1wa5b_ 486 IYEKAYKIIET 496 (503)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888776643
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.03 E-value=0.00039 Score=86.24 Aligned_cols=375 Identities=13% Similarity=0.120 Sum_probs=232.8
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC-h--HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhh-
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD-F--TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~-y--~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (1972)
.+...+.+.+-..+..|+..++++++...-.+-+ . ..+++.|...+. +.+..+...|+.++..|+.+-.......
T Consensus 80 ~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~ 159 (503)
T d1wa5b_ 80 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVV 159 (503)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5667788889999999999999987533222211 0 235667777887 7788899999999999986543322222
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000167 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1972)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1972)
-..++|.++..+......+++.+..+|..+... +... ..+++.+...+.+.++.++..++..|..+.......
T Consensus 160 ~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~-~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~ 238 (503)
T d1wa5b_ 160 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 238 (503)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred hCCChHHHHHHhcCCChhHHHHHHHHHHHHhhh-hHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccc
Confidence 234788899999889999999999999888753 1111 124677788888889999888887777765432221
Q ss_pred HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccC
Q 000167 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517 (1972)
Q Consensus 438 ~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~ 517 (1972)
.-......++|.+.+++...+++++..+..++..+.. +... .+...++.
T Consensus 239 ~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~--~~~~--------------~~~~~~~~--------------- 287 (503)
T d1wa5b_ 239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD--GPQE--------------AIQAVIDV--------------- 287 (503)
T ss_dssp CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS--SCHH--------------HHHHHHHT---------------
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcc--CCch--------------hhhhhhhh---------------
Confidence 1112357789999999999999999888877765542 1110 01111110
Q ss_pred CCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 000167 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR 597 (1972)
Q Consensus 518 ~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~ 597 (1972)
T Consensus 288 -------------------------------------------------------------------------------- 287 (503)
T d1wa5b_ 288 -------------------------------------------------------------------------------- 287 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccch------hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHH
Q 000167 598 LGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ------SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 671 (1972)
Q Consensus 598 ~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~------~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~ 671 (1972)
-+.+.++..+.+.++..+..++..|..+....+.... ..+.+..+ +...+..+...++-++..++
T Consensus 288 ---~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~l------l~~~~~~i~~~~~~~l~nl~ 358 (503)
T d1wa5b_ 288 ---RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL------LSSPKENIKKEACWTISNIT 358 (503)
T ss_dssp ---TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH------TTCSCHHHHHHHHHHHHHHT
T ss_pred ---hhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHH------hcCCCHHHHHHHHHHHHHHh
Confidence 0113455667777888888888877766543221100 11222222 34456677777777777665
Q ss_pred HHcCCCchhhH-HHHHHHHHhhhc--chhhhHHHHHHHHHHHhhcC--hh---H-----HHHHHHHhhhhCCChHHHHHH
Q 000167 672 ATATKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVG--PG---F-----IFERLYKIMKDHKNPKVLSEG 738 (1972)
Q Consensus 672 ~~~~~~~~~~~-~~il~~LveKlg--d~K~r~~a~~~L~~l~e~~~--~~---~-----vl~~l~~~l~~~KnpKv~~e~ 738 (1972)
...+....... ..+++.+++.+. +.+++..+..+|..++.... ++ + ++..++..+ +..++++...+
T Consensus 359 ~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L-~~~d~~~~~~~ 437 (503)
T d1wa5b_ 359 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVT 437 (503)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT-TTCCHHHHHHH
T ss_pred hccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHh-cCCCHHHHHHH
Confidence 32111111111 235566666654 35678888888888776432 11 1 233444543 67889999999
Q ss_pred HHHHHHHHHH-------hCCCCCChh------hHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 000167 739 ILWMVSAVED-------FGVSHLKLK------DLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1972)
Q Consensus 739 l~~L~~~i~~-------fG~~~l~~k------~li~~l~~~gL~~sn~~VR~aA~~ll~~L 786 (1972)
|..|..++.- .+...-... ..++.+..+ ..|.|..|++.|.+++-..
T Consensus 438 L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~L-q~~~~~~i~~~A~~il~~~ 497 (503)
T d1wa5b_ 438 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC-QQNENDKIYEKAYKIIETY 497 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGG-GGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHH
Confidence 9998887741 111110111 133445555 6789999999998876443
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.0026 Score=79.04 Aligned_cols=184 Identities=8% Similarity=0.001 Sum_probs=126.7
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~--~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (1972)
.+.+.+.+.+=..|..|+..|..++...... -....+++..|.+.+. ..+..+...|+.++..|+..-...-.-.-.
T Consensus 21 ~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 100 (529)
T d1jdha_ 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS 100 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHC
Confidence 5777788888899999999999987432110 0123567888888887 456788899999998887422111111122
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1972)
..+|.|+..+++..+.++..+..+|..+... .... ...++.+...+++.++.++..++..|..+.........
T Consensus 101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 179 (529)
T d1jdha_ 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcc-cchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHH
Confidence 5689999999999999999999999988765 2221 23578888889999999999999888876543221111
Q ss_pred HHhhhhHHHHHHHHhc-CCChHHHHHHHHHHHHHH
Q 000167 440 LKVHKDYVPICMECLN-DGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 440 ~~~l~~l~p~l~k~l~-Ds~~~VR~aA~~~l~~l~ 473 (1972)
.-.-...++.+..++. .....++..+..+++.+.
T Consensus 180 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls 214 (529)
T d1jdha_ 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred HHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 1122335667777774 445678888877776553
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=0.0012 Score=73.97 Aligned_cols=246 Identities=12% Similarity=0.042 Sum_probs=142.2
Q ss_pred HHhhhcc--hhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHH-HHh
Q 000167 689 ISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF-CKD 765 (1972)
Q Consensus 689 LveKlgd--~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~-l~~ 765 (1972)
|++-|.| +.+|..|..+|..+. .+.+++.++..+ +++++.||..++..|..+ +...-.....+.. +..
T Consensus 24 L~~~L~d~~~~vR~~A~~~L~~~~----~~~~~~~l~~~l-~d~~~~vr~~a~~aL~~l----~~~~~~~~~~~~~l~~~ 94 (276)
T d1oyza_ 24 LFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEFC-SDKNYIRRDIGAFILGQI----KICKKCEDNVFNILNNM 94 (276)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHS----CCCTTTHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhC----CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----ccccccccchHHHHHHH
Confidence 3444444 456777766665542 334555555553 567777777776665442 2211111222222 233
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 000167 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (1972)
Q Consensus 766 ~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~l 845 (1972)
+ +.+.++.||.+|...++.+......
T Consensus 95 ~-l~d~~~~vr~~a~~aL~~~~~~~~~----------------------------------------------------- 120 (276)
T d1oyza_ 95 A-LNDKSACVRATAIESTAQRCKKNPI----------------------------------------------------- 120 (276)
T ss_dssp H-HHCSCHHHHHHHHHHHHHHHHHCGG-----------------------------------------------------
T ss_pred H-hcCCChhHHHHHHHHHHHHccccch-----------------------------------------------------
Confidence 4 5667777777777776665432110
Q ss_pred CcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Q 000167 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 925 (1972)
Q Consensus 846 prvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~a 925 (1972)
....+.+.+...+.|.+|.+|..++..+..+-. ......+...+.+.+..+...+...++.+..
T Consensus 121 ----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~- 184 (276)
T d1oyza_ 121 ----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKY- 184 (276)
T ss_dssp ----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC-
T ss_pred ----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-----------HHHHHHHHHhcccccchhhhhHHHHHHhhhc-
Confidence 001123345556778888888887766543221 2234455556677777776665554443211
Q ss_pred cChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC
Q 000167 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (1972)
Q Consensus 926 lg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~ 1005 (1972)
....+.+.++..+.+....+|.++..++.. .+....++.|...+.++ .+|..++..|.+. .
T Consensus 185 -------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~----~~~~~~~~~L~~~l~d~----~vr~~a~~aL~~i-g--- 245 (276)
T d1oyza_ 185 -------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSY----RKDKRVLSVLCDELKKN----TVYDDIIEAAGEL-G--- 245 (276)
T ss_dssp -------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH----TTCGGGHHHHHHHHTSS----SCCHHHHHHHHHH-C---
T ss_pred -------cccccchhhhhhhhhhhhhhhhhhccccch----hhhhhhHHHHHHHhCCh----HHHHHHHHHHHHc-C---
Confidence 123456677888899999999988777654 45677888888888754 4677777777643 2
Q ss_pred CCCChhhhHHHHHhhcC-CCCHHHHHHHHHHH
Q 000167 1006 GFPDAAHLLKPASIAMT-DKSSDVRKAAEACI 1036 (1972)
Q Consensus 1006 ~~~~~~~ll~pl~~~L~-D~~~dVR~aA~~~l 1036 (1972)
. ...+..+...+. +.+.+||.+|.+.|
T Consensus 246 -~---~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 246 -D---KTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp -C---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred -C---HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 1 224444666564 46789999988776
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=5.7e-05 Score=85.92 Aligned_cols=186 Identities=12% Similarity=0.070 Sum_probs=132.8
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchh-hhhh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSR 365 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~--~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~ 365 (1972)
..-....+.++.+|..|++.|..++....... ...+.+...+...+++.+..|+..|+.+|+.++..-...-. -.-.
T Consensus 21 ~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~ 100 (264)
T d1xqra1 21 TAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL 100 (264)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444567888999999999999874321000 11233444455667788999999999999999964322111 1123
Q ss_pred hHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCC------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000167 366 FLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLN------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1972)
Q Consensus 366 ~llp~LL~klk-dkk~~V~~aa~~aL~al~~~~~~~------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (1972)
..+|.|+..+. +..+.++..+..|+..++.+ ... -...++.+...+++.++.++..++..|..++...+...
T Consensus 101 ~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 179 (264)
T d1xqra1 101 GALRKLLRLLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 179 (264)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CchHHHHHHhhcCCCHHHHHHHHHHHHHHhcc-chhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHH
Confidence 67899999884 67788999999999998865 111 12346888889999999999999999988776544321
Q ss_pred HHHhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 000167 439 VLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1972)
Q Consensus 439 l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 476 (1972)
.... ...+|.++..+.+.+++||..|..+|+.+....
T Consensus 180 -~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 180 -GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp -HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred -HHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 1122 347899999999999999999999998887443
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.023 Score=70.03 Aligned_cols=337 Identities=11% Similarity=0.028 Sum_probs=192.1
Q ss_pred hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh--hHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhhhh---
Q 000167 54 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELEAV--- 126 (1972)
Q Consensus 54 ~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~--~~~v~~~LveK~l~--~k~~~k~~a~~~ll~~~E~~~~--- 126 (1972)
.+.+.+.+.|.+..++..++.++..+.+..... ... ..++++.|+.- |. ..+.+++.|..++..+...+..
T Consensus 19 ip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~-~~~~~~~~~v~~l~~~-L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (529)
T d1jdha_ 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRT-MQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHH-HHHHHhhhHHHHHHHH-HcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 556677889999999999999998876442211 111 24577777753 53 4678899998888777643221
Q ss_pred ---hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCc--cChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCC
Q 000167 127 ---DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 201 (1972)
Q Consensus 127 ---~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~--~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~ 201 (1972)
...++.|...+.+.+++++..|+.+|.++........ +--...++.|..++.+.+..+|..+..++..+-..-
T Consensus 97 i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-- 174 (529)
T d1jdha_ 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN-- 174 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC--
T ss_pred HHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh--
Confidence 2456777888999999999999999998876544321 112236788999999999999999988887664321
Q ss_pred chhhHHHhh-hChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 000167 202 DPVKTILFE-KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 280 (1972)
Q Consensus 202 ~~l~~~l~~-~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vd 280 (1972)
...+..+.. +..+..+.-+ .... ..+ .+.....-.. .-.... +.. ..+++ ..
T Consensus 175 ~~~~~~~~~~~~~~~L~~ll----~~~~--~~~---~~~~~~~~l~-----~ls~~~-----------~~~-~~~~~-~g 227 (529)
T d1jdha_ 175 QESKLIILASGGPQALVNIM----RTYT--YEK---LLWTTSRVLK-----VLSVCS-----------SNK-PAIVE-AG 227 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHH----HHCC--CHH---HHHHHHHHHH-----HHTTST-----------THH-HHHHH-TT
T ss_pred hHHHHHHHhcccchHHHHHH----Hhhh--hHH---HHHHHHHHHh-----hhhccc-----------ccc-chhhh-hh
Confidence 111111111 1111111111 1000 000 0000000000 000000 000 00000 00
Q ss_pred ccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh--
Q 000167 281 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT-- 358 (1972)
Q Consensus 281 Il~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~-- 358 (1972)
+ + +.+...+.+.+...+..++..+..+....... .....+++.|.+.+.+.+..+...|+.++..|+.+-..
T Consensus 228 ~---~--~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~-~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 301 (529)
T d1jdha_ 228 G---M--QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301 (529)
T ss_dssp H---H--HHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred h---h--hhHHHHhcccchhhhhhhhhHHHhccccccch-hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHH
Confidence 0 1 12334456677778888888888776433222 23456888999999988888999999999998753211
Q ss_pred -chhhhhhhHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHhcCCCh---------HhHHHHHHHHhhc-CChHHHHHHHH
Q 000167 359 -HFSGSSRFLLPVLLEKLK--EKKPTVAESLTQTLQAMHKAGCLNL---------VDVVEDVKTSVKN-KVPLVRSLTLN 425 (1972)
Q Consensus 359 -~f~~~~~~llp~LL~klk--dkk~~V~~aa~~aL~al~~~~~~~l---------~~il~~l~~~l~~-Knp~vR~~~l~ 425 (1972)
.+.. ...++.++..+. ..+..+++++..++..+... .... ...++.+...+.+ .++.+...++.
T Consensus 302 ~~i~~--~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~ 378 (529)
T d1jdha_ 302 MMVCQ--VGGIEALVRTVLRAGDREDITEPAICALRHLTSR-HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378 (529)
T ss_dssp HHHHH--TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS-STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHH--hhhHHHHHHHHHhhhcchhHHHHHHHHhhcccch-hhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHH
Confidence 1111 234555555442 34567788887777776532 1111 1224556666664 44566666666
Q ss_pred HHHHH
Q 000167 426 WVTFC 430 (1972)
Q Consensus 426 ~L~~~ 430 (1972)
.+..+
T Consensus 379 ~l~~l 383 (529)
T d1jdha_ 379 LIRNL 383 (529)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 66554
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.17 E-value=3.1e-05 Score=75.82 Aligned_cols=108 Identities=17% Similarity=0.104 Sum_probs=83.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhc
Q 000167 335 TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN 414 (1972)
Q Consensus 335 ~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~ 414 (1972)
+|.|..|+..|+.+++.+ + ...++.|++.+.+..+.||..+..+|..+ .-...++.|...+++
T Consensus 2 ~D~~~~VR~~A~~aL~~~----~-------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~------~~~~~~~~L~~~l~d 64 (111)
T d1te4a_ 2 ADENKWVRRDVSTALSRM----G-------DEAFEPLLESLSNEDWRIRGAAAWIIGNF------QDERAVEPLIKLLED 64 (111)
T ss_dssp CSSCCCSSSSCCSSTTSC----S-------STTHHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHh----C-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhc------chhhhHHHHHhhhcc
Confidence 466666666666665543 1 23467889999999999998887776432 335678889999999
Q ss_pred CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 000167 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLA 470 (1972)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~ 470 (1972)
.+|.||..++..|..+ +. +...+.|.++++|.++.||.+|..+|.
T Consensus 65 ~~~~VR~~a~~aL~~i----~~-------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 65 DSGFVRSGAARSLEQI----GG-------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp CCTHHHHHHHHHHHHH----CS-------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred chhHHHHHHHHHHHHh----Cc-------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999888753 11 445788899999999999999998874
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.14 E-value=0.23 Score=65.19 Aligned_cols=268 Identities=11% Similarity=0.104 Sum_probs=151.7
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhh----hcccHH-
Q 000167 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL----ADVKPA- 804 (1972)
Q Consensus 730 KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L----~~lkp~- 804 (1972)
..+-+|..++..+.+........ ....++..+... +.+.+..||..|..++..+...........+ +.+.|.
T Consensus 470 ~~~~lr~~~~~~i~~~~~~~~~~--~~~~~~~~l~~~-L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l 546 (959)
T d1wa5c_ 470 PHIILRVDAIKYIYTFRNQLTKA--QLIELMPILATF-LQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST 546 (959)
T ss_dssp SCHHHHHHHHHHHHHTGGGSCHH--HHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred chHHHHHHHHHHHHHHHhhccHH--HHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhH
Confidence 34566766666665544322111 235677777777 9999999999999988877654432111000 111111
Q ss_pred --HHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHH---HHHHHHHHHH
Q 000167 805 --LLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV---RLESIEAVNK 879 (1972)
Q Consensus 805 --ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~---R~eale~l~~ 879 (1972)
++..+-..+.+.. ..... +...+..+..
T Consensus 547 ~~ll~~L~~~l~~~~-----------------------------------------------~~~~~~~~~~~ll~~l~~ 579 (959)
T d1wa5c_ 547 EILLKNLIALILKHG-----------------------------------------------SSPEKLAENEFLMRSIFR 579 (959)
T ss_dssp HHHHHHHHHHHHTTC-----------------------------------------------CCHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc-----------------------------------------------chhhhHHHHHHHHHHHHH
Confidence 1111111111110 01111 1235556677
Q ss_pred HHHHccccCCCCChhhHHHHHHhcc-----ccchHHHHHHHHHHHHHHHHHcChh-hHhhhhhHHHHHHHHhCCCcHHHH
Q 000167 880 ILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNKKHMR 953 (1972)
Q Consensus 880 ll~~a~~~I~~~~~~eL~~~L~~~L-----~DsN~~V~~~Al~~l~~La~alg~~-~~~~~~~llp~ll~~L~D~k~~Vr 953 (1972)
++......+.+. ...++..|...+ ++.+.......+++++.+....++. +..+...++|.+...+........
T Consensus 580 ii~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~ 658 (959)
T d1wa5c_ 580 VLQTSEDSIQPL-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFI 658 (959)
T ss_dssp HHHHHTTTTGGG-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHH
Confidence 776544455554 255666665543 3456777888899999999888765 567888899999888887777778
Q ss_pred HHHHHHHHHHHHhcC-----chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC-CCChhhhHHHHHhhcCCCCHH
Q 000167 954 ECTLTVLDAWLAAVH-----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAMTDKSSD 1027 (1972)
Q Consensus 954 ~Aa~~aL~~i~~~~~-----l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~-~~~~~~ll~pl~~~L~D~~~d 1027 (1972)
..+...+..+....+ +..+++.+....... ....-..+...+..++...+. .......+..+..++.+...
T Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~- 735 (959)
T d1wa5c_ 659 PYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWE--LKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY- 735 (959)
T ss_dssp HHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGC--CTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT-
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHH--HhhhHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHHCCCcc-
Confidence 888888888887764 233444333222111 112233444444433332221 12233445555556655443
Q ss_pred HHHHHHHHHHHHHHHcChhHHHHHh
Q 000167 1028 VRKAAEACIVEILRAGGQETIEKNL 1052 (1972)
Q Consensus 1028 VR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1972)
+..|...+..+...++.+.+.+++
T Consensus 736 -~~~~~~ll~~ii~~~~~~~~~~~l 759 (959)
T d1wa5c_ 736 -EVHGFDLLEHIMLLIDMNRLRPYI 759 (959)
T ss_dssp -HHHHHHHHHHHHHHSCHHHHGGGH
T ss_pred -hHHHHHHHHHHHHHCchhhhHhHH
Confidence 467888888888888876655554
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.0024 Score=71.50 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=98.8
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHH
Q 000167 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1972)
Q Consensus 329 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l 408 (1972)
.|.+.++|.|..|+..|+.+|+.+.. ...+|.++..++|+.+.||..+..+|..+... ....+.+++.+
T Consensus 23 ~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~-~~~~~~~~~~l 91 (276)
T d1oyza_ 23 ELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDNVFNIL 91 (276)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccccchHHHH
Confidence 46678999999999999999987632 45789999999999999999888887765422 12334455555
Q ss_pred HH-HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 409 KT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 409 ~~-~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
.. .+++.++.+|..++.+|..+....+ ...+.+++.+...++|.++.||.++..+++.+.
T Consensus 92 ~~~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~ 152 (276)
T d1oyza_ 92 NNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 152 (276)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred HHHHhcCCChhHHHHHHHHHHHHccccc-----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc
Confidence 53 5679999999999999987654322 123668889999999999999999988876544
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.00058 Score=77.25 Aligned_cols=173 Identities=12% Similarity=0.103 Sum_probs=121.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh-hhhHHHHH
Q 000167 865 PDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDI 941 (1972)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~--~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~l 941 (1972)
.++..|..|++.|..++.... ..+.. .|.+...+...+++.+..++..|+.+|+.++..-...-... -...+|.+
T Consensus 29 ~~~~~~~~Al~~L~~L~~~~d~a~~l~~--~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 29 ADQQEREGALELLADLCENMDNAADFCQ--LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHH--TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHH--cCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 357889999999999885311 11111 24555556667888999999999999999985432211122 23678999
Q ss_pred HHHhC-CCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC-Ch--
Q 000167 942 LKCLG-DNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DA-- 1010 (1972)
Q Consensus 942 l~~L~-D~k~~Vr~Aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~-~~-- 1010 (1972)
+..+. +....+|..+..++..++.+.. -...++.+...|.+. ++.++..++..+.......+... .+
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 184 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCS 184 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC--chHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99885 6778899999999999987653 123467788888866 68888888777776555433211 11
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1011 ~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
...+..++..|.+.+.+||..|..+|..+..
T Consensus 185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 1234558888899999999999999987764
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.83 E-value=0.00019 Score=69.87 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=83.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC
Q 000167 904 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA 983 (1972)
Q Consensus 904 L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~ 983 (1972)
|+|.|..|+..|+..++.+ |. ..++.++..|.|.++.||..|..+|..+ +-...+|.+...|.++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~~-------~~~~~L~~~l~d~~~~vR~~a~~~L~~~----~~~~~~~~L~~~l~d~ 65 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----GD-------EAFEPLLESLSNEDWRIRGAAAWIIGNF----QDERAVEPLIKLLEDD 65 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----SS-------TTHHHHHHGGGCSCHHHHHHHHHHHGGG----CSHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHh----CH-------HHHHHHHHHHcCCCHHHHHHHHHHHHhc----chhhhHHHHHhhhccc
Confidence 5678888888777766543 32 2356788899999999999998888643 4566788899999987
Q ss_pred CCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHH
Q 000167 984 KLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1972)
Q Consensus 984 ~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~ 1037 (1972)
++.+|..++..|.+. . ....+..+...++|.+++||.+|..+|.
T Consensus 66 --~~~VR~~a~~aL~~i-~-------~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 66 --SGFVRSGAARSLEQI-G-------GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp --CTHHHHHHHHHHHHH-C-------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --hhHHHHHHHHHHHHh-C-------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 689999999988753 1 1334455778899999999999988774
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.31 E-value=2.9 Score=53.99 Aligned_cols=180 Identities=13% Similarity=0.114 Sum_probs=110.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccc-----------cCCCCChhhHHHHHHhccccchH-----HHHHHHHHHHH
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANK-----------RIQPAGTGELFGGLRGRLYDSNK-----NLVMATLITLG 920 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~-----------~I~~~~~~eL~~~L~~~L~DsN~-----~V~~~Al~~l~ 920 (1972)
.++..+.|.+-.+|..|...+..++..... .+.|. +.+++..|...+.+.+. .+....+.++.
T Consensus 500 ~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~-l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~ 578 (959)
T d1wa5c_ 500 ILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS-TEILLKNLIALILKHGSSPEKLAENEFLMRSIF 578 (959)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT-HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHH
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhh-HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHH
Confidence 455556667777888888888888753211 12222 35666666665543322 22344678888
Q ss_pred HHHHHcChhhHhhhhhHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHhcCCCChh
Q 000167 921 AVASAMGPAVEKSSKGVLSDILKCLG-----DNKKHMRECTLTVLDAWLAAVHL-------DKMVPYVTTALTDAKLGAE 988 (1972)
Q Consensus 921 ~La~alg~~~~~~~~~llp~ll~~L~-----D~k~~Vr~Aa~~aL~~i~~~~~l-------~~ll~~l~~~L~~~~~~~~ 988 (1972)
.++..++..+.+|+..+++.+...+. +.+......+..++..++...+. ..++|.+...+.+. ...
T Consensus 579 ~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~--~~~ 656 (959)
T d1wa5c_ 579 RVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED--IQE 656 (959)
T ss_dssp HHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT--CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhcc--chh
Confidence 99999999999999988888876552 24567888899999999887752 33456666666543 244
Q ss_pred HHHHHHHHHHHHhccCCC-CCChhhhHHHHHhh-cCCCCHHHHHHHHHHHHHHH
Q 000167 989 GRKDLFDWLSKQLTGLSG-FPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~-~~~~~~ll~pl~~~-L~D~~~dVR~aA~~~l~~l~ 1040 (1972)
...+++..+...+...+. .+...+++.+++.. +.+... .-.....++..++
T Consensus 657 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~l~~~~ 709 (959)
T d1wa5c_ 657 FIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG-NIPAVTRLLKSFI 709 (959)
T ss_dssp THHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHHhh-hHHHHHHHHHHHH
Confidence 556666666655555443 34456666665543 333333 3344444444444
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.065 Score=62.81 Aligned_cols=393 Identities=11% Similarity=-0.001 Sum_probs=188.2
Q ss_pred hhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh--hHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--hh--
Q 000167 55 PLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VD-- 127 (1972)
Q Consensus 55 ~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~--~~~v~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~--~~-- 127 (1972)
+.+-+.+.++|+.+|..|..+|..+....+. ..+. -...+|.|++- +. ..+.+|..|..++..++.... ..
T Consensus 5 p~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~-~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDL-LRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCcHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556788999999999999999888643322 2222 22467888865 65 689999999998888773211 11
Q ss_pred ---hHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhh----------------hhhhcCCChhHHHH
Q 000167 128 ---VFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKML----------------PELFDHQDQNVRAS 187 (1972)
Q Consensus 128 ---~v~~~L~~~~~-~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l----------------~~ll~~~d~~VR~~ 187 (1972)
..++.|...+. ..++.++..++.+|..+.............-++.+ .....+.+..|+..
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 162 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence 23455666554 57788888888888887654332211111111111 11235667888888
Q ss_pred HHHHHHHHHHhhCCchhhHHHh--hhChHHHHHHHHHHHHhccCCCCCCcch-hhhhhHhhhhhccccCCCCCCCCCCCC
Q 000167 188 SKGLTLELCRWIGKDPVKTILF--EKMRDTMKKELEVELVNVSGTARPTRKI-RAEQDKELGQELISEDVGPGPSEESTA 264 (1972)
Q Consensus 188 a~~l~~ely~~lG~~~l~~~l~--~~Lk~~q~keLe~~f~k~~~~~~P~R~~-rs~~~~~~~~~a~~~~~~~~~~~~~~~ 264 (1972)
+..++..+...-. -+.... ..+-+..+..+................. ............ ....... ....
T Consensus 163 a~~~l~~~~~~~~---~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~--~~~~ 235 (457)
T d1xm9a1 163 ATGCLRNLSSADA---GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA--EVPTRYR--QLEY 235 (457)
T ss_dssp HHHHHHHHTTSHH---HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHH--HSCCHHH--HHHH
T ss_pred HHHHHHHHhcCch---HHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHH--HHHHHHH--HHHh
Confidence 7776655432211 111111 1122333333333333221110000000 000000000000 0000000 0000
Q ss_pred CCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHH-HHhcCCCCCC-CChHHHHHHHHHHhc-ccCHHH
Q 000167 265 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT-KLASTKRIAP-GDFTEVCRTLKKLIT-DVNIAV 341 (1972)
Q Consensus 265 ~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~-~l~~~~ki~~-~~y~~l~~~L~k~l~-D~N~~V 341 (1972)
. ..+......... .+.. ..+ ..+........ .....+.... .....+++.|...+. ..+..+
T Consensus 236 ~---~~~~~~~~~~~~--------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 300 (457)
T d1xm9a1 236 N---ARNAYTEKSSTG--------CFSN-KSD---KMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300 (457)
T ss_dssp T---C----------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHH
T ss_pred h---hhhhhhHHHhhh--------hhhh-hhH---HHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHH
Confidence 0 000000000000 0000 000 00000000000 0000000000 011234455555554 445555
Q ss_pred HHHHHHHHHHHHHHhhhchh------hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh----HhHHHHHHHH
Q 000167 342 AVEAIQAIGNLARGLRTHFS------GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL----VDVVEDVKTS 411 (1972)
Q Consensus 342 ~~~A~~~l~~La~~L~~~f~------~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l----~~il~~l~~~ 411 (1972)
...++.++..++........ -.-...+|.|++.+++....|+.++..++..+... ...- ...++.++..
T Consensus 301 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~-~~~~~~i~~~~i~~li~~ 379 (457)
T d1xm9a1 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGNQVFPEVTRL 379 (457)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC-hhHHHHHHHhhHHHHHHH
Confidence 55556666665532221111 11234689999999999999999999999988754 1111 1234556665
Q ss_pred hhc------CChHHHHHHHHHHHHHHHhcChhHHHHhhh-hHHHHHHHHhcC-CChHHHHHHHHHHHHHH
Q 000167 412 VKN------KVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECLND-GTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 412 l~~------Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~-~l~p~l~k~l~D-s~~~VR~aA~~~l~~l~ 473 (1972)
+.. .++.++..++.+|..+....+.. -....+ ..++.|+..+.+ .++.|+++|..+|..++
T Consensus 380 L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~ 448 (457)
T d1xm9a1 380 LTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp TTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HhccccCcCCcHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 542 34679999999999877554432 112222 356788887754 57899999999998764
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.9 Score=52.44 Aligned_cols=105 Identities=10% Similarity=0.045 Sum_probs=76.6
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----
Q 000167 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----- 968 (1972)
Q Consensus 896 L~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~----- 968 (1972)
.++.|.+.|.+++..+...|+.+|+.|+..- ......+ ...+|.+++.|.+.++.+|..|..+|..++..-.
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4677888889999999999999999998432 2233322 2468999999999999999999999998873211
Q ss_pred --chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 000167 969 --LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (1972)
Q Consensus 969 --l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~ 1002 (1972)
-...++.+...+.+.. ++.+|..++..+.....
T Consensus 82 i~~~g~v~~li~~l~~~~-~~~~~~~a~~~l~~l~~ 116 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp HHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHT
T ss_pred HHHCCChHHHHHHHhccC-cHHHHHHHHHHHHHHHh
Confidence 1123566777776543 67888888877776544
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=92.16 E-value=0.032 Score=60.99 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=75.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhH
Q 000167 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 937 (1972)
Q Consensus 858 ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~l 937 (1972)
|...+.|.+|.+|..+.+.+ . . ..|...++|.+..|+..+.. .++.
T Consensus 119 L~~Ll~D~d~~VR~~aa~~~-----------~----~---~~L~~L~~D~d~~VR~~aA~-------~~~~--------- 164 (233)
T d1lrva_ 119 LEQMAADRDYLVRAYVVQRI-----------P----P---GRLFRFMRDEDRQVRKLVAK-------RLPE--------- 164 (233)
T ss_dssp GGGGTTCSSHHHHHHHHHHS-----------C----G---GGGGGTTTCSCHHHHHHHHH-------HSCG---------
T ss_pred HHHHhcCCCHHHHHHHHhcc-----------c----h---hHHHHHhcCCCHHHHHHHHH-------hcCH---------
Confidence 44557899999998886531 1 1 22345568899888876543 3332
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHH
Q 000167 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017 (1972)
Q Consensus 938 lp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl 1017 (1972)
+.++..++|..+.||..+...+ +. +.|...+.++ ++.+|..+...+ ...+
T Consensus 165 -~~L~~l~~D~d~~VR~~aa~~L-------~~----~~L~~l~~D~--d~~VR~aaae~~----------------~~~l 214 (233)
T d1lrva_ 165 -ESLGLMTQDPEPEVRRIVASRL-------RG----DDLLELLHDP--DWTVRLAAVEHA----------------SLEA 214 (233)
T ss_dssp -GGGGGSTTCSSHHHHHHHHHHC-------CG----GGGGGGGGCS--SHHHHHHHHHHS----------------CHHH
T ss_pred -HHHHHHccCCCHHHHHHHHHhc-------Cc----HHHHHHHhCC--CHHHHHHHHHhc----------------cHHH
Confidence 3456678899999999876543 32 2344455665 689998876432 1235
Q ss_pred HhhcCCCCHHHHHHHHH
Q 000167 1018 SIAMTDKSSDVRKAAEA 1034 (1972)
Q Consensus 1018 ~~~L~D~~~dVR~aA~~ 1034 (1972)
+..|.|.+++||.+|.+
T Consensus 215 l~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 215 LRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHCCCCCHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHH
Confidence 67789999999999864
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=1.1 Score=44.71 Aligned_cols=98 Identities=16% Similarity=0.266 Sum_probs=75.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (1972)
+.+.||. ++-+|..++.. .+....+.+.+|+++|...|.++...||.++..++...|..|... .+.|+.
T Consensus 21 l~~~dw~----~ileicD~I~~-----~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~ 91 (145)
T d1ujka_ 21 NKELDWA----SINGFCEQLNE-----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 91 (145)
T ss_dssp CSSCCHH----HHHHHHHHHTS-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHH
Confidence 4556896 34445555531 222247899999999999999999999999999999999999754 346777
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D------~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+.+.+.+ ....|++-+...+..|....+
T Consensus 92 ~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp 126 (145)
T d1ujka_ 92 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 126 (145)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence 78777764 345799999999999998874
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.42 E-value=0.72 Score=46.04 Aligned_cols=98 Identities=16% Similarity=0.315 Sum_probs=74.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||.. +-+|..++.. .+....+.+.+|+++|++.|.+++..|+.++..++...|..|...+ +.++.
T Consensus 18 ~~~~dw~~----il~icD~I~~-----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~ 88 (145)
T d1dvpa1 18 RLEPDWPS----ILLICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (145)
T ss_dssp CSSCCHHH----HHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCCCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHH
Confidence 45668983 3445555542 2333478999999999999999999999999999999999887543 45666
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+...+.. ....|++-+...+..|....+
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (145)
T d1dvpa1 89 MFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (145)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 66555533 356799999999999999875
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=1.2 Score=44.74 Aligned_cols=98 Identities=13% Similarity=0.231 Sum_probs=76.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||..= -++..++.. .+....+.+.+|+++|...|.+++..||.++..++...|..|...+ +.|+.
T Consensus 15 l~~~dw~~i----leicD~In~-----~~~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~ 85 (151)
T d1juqa_ 15 NRQEDWEYI----IGFCDQINK-----ELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 85 (151)
T ss_dssp CSSCCHHHH----HHHHHHHHH-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCcCHHHH----HHHHHHHhc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHH
Confidence 456789743 335555542 1222378999999999999999999999999999999999997654 56777
Q ss_pred HHHHHhCCC------cHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGDN------KKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D~------k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+.+.+..+ ...|++-+...+..|....+
T Consensus 86 ~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~ 120 (151)
T d1juqa_ 86 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 120 (151)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHcc
Confidence 777777642 45699999999999998875
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.16 E-value=0.55 Score=46.79 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=62.7
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCc---cChhHHHHhhhhhhcC------CChhHHHHHHHHHHHH
Q 000167 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLEL 195 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~---~~~k~il~~l~~ll~~------~d~~VR~~a~~l~~el 195 (1972)
.+...+..|.+.+.|+||+++.-|+..|-.++++=|... +.-+.|+..|.+++.. .+..||+....++.+.
T Consensus 35 ~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~W 114 (143)
T d1mhqa_ 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (143)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 356678888899999999999999999999999877632 3457899999998863 5788999999888887
Q ss_pred HHhhCC
Q 000167 196 CRWIGK 201 (1972)
Q Consensus 196 y~~lG~ 201 (1972)
+.+...
T Consensus 115 a~~f~~ 120 (143)
T d1mhqa_ 115 TVWFPE 120 (143)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 776643
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.90 E-value=2.7 Score=41.52 Aligned_cols=98 Identities=14% Similarity=0.265 Sum_probs=75.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+...||. ++-+|..++... +....+.+.+|+++|+..|.+++..|+.++..++...|..|...+ +.|+.
T Consensus 14 ~~~~dw~----~il~icD~I~~~-----~~~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~ 84 (143)
T d1mhqa_ 14 MSEQDWS----AIQNFCEQVNTD-----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (143)
T ss_dssp CSSCCHH----HHHHHHHHHHHS-----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHcC-----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 4556896 344455555431 222368999999999999999999999999999999999997543 45777
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D------~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+...+.+ ....|++-+...+..|.....
T Consensus 85 ~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~ 119 (143)
T d1mhqa_ 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (143)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 77776654 346799999999999998875
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.37 E-value=0.41 Score=47.87 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=62.6
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC---ccChhHHHHhhhhhhcCC-ChhHHHHHHHHHHHHHHhhC
Q 000167 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFDHQ-DQNVRASSKGLTLELCRWIG 200 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~---~~~~k~il~~l~~ll~~~-d~~VR~~a~~l~~ely~~lG 200 (1972)
++..++..|.+.+.|+||+++.-||..|-.++.+=|.. .+.-+.++..|.+++... +..||+....++..-....+
T Consensus 39 ~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (145)
T d1dvpa1 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (145)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 35678888999999999999999999999999986652 233467888888888654 78899999999888887766
Q ss_pred C
Q 000167 201 K 201 (1972)
Q Consensus 201 ~ 201 (1972)
.
T Consensus 119 ~ 119 (145)
T d1dvpa1 119 S 119 (145)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=84.09 E-value=0.16 Score=55.36 Aligned_cols=113 Identities=18% Similarity=0.134 Sum_probs=76.0
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHH
Q 000167 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 369 (1972)
+...+.+.+|..|..+...+ + ...|...++|.+..|...++. .++ .+
T Consensus 119 L~~Ll~D~d~~VR~~aa~~~------~----------~~~L~~L~~D~d~~VR~~aA~-------~~~----------~~ 165 (233)
T d1lrva_ 119 LEQMAADRDYLVRAYVVQRI------P----------PGRLFRFMRDEDRQVRKLVAK-------RLP----------EE 165 (233)
T ss_dssp GGGGTTCSSHHHHHHHHHHS------C----------GGGGGGTTTCSCHHHHHHHHH-------HSC----------GG
T ss_pred HHHHhcCCCHHHHHHHHhcc------c----------hhHHHHHhcCCCHHHHHHHHH-------hcC----------HH
Confidence 33446899999999987642 1 123445667999888876654 222 13
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000167 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1972)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1972)
.++..++|..+.||..+...+ +. +.|...+++.+|.||..+.. ..+ +.
T Consensus 166 ~L~~l~~D~d~~VR~~aa~~L---------~~----~~L~~l~~D~d~~VR~aaae-------~~~------------~~ 213 (233)
T d1lrva_ 166 SLGLMTQDPEPEVRRIVASRL---------RG----DDLLELLHDPDWTVRLAAVE-------HAS------------LE 213 (233)
T ss_dssp GGGGSTTCSSHHHHHHHHHHC---------CG----GGGGGGGGCSSHHHHHHHHH-------HSC------------HH
T ss_pred HHHHHccCCCHHHHHHHHHhc---------Cc----HHHHHHHhCCCHHHHHHHHH-------hcc------------HH
Confidence 455667899999998765432 11 33455678999999987652 111 33
Q ss_pred HHHHhcCCChHHHHHHHH
Q 000167 450 CMECLNDGTPEVRDAAFS 467 (1972)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~ 467 (1972)
+.+.|.|.+++||.+|.+
T Consensus 214 ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 214 ALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHHCCCCCHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHH
Confidence 557789999999999875
|
| >d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Tom1 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.13 E-value=3.1 Score=41.52 Aligned_cols=98 Identities=18% Similarity=0.370 Sum_probs=69.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~-DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~ll 938 (1972)
+...||.. +-.|..++.. .+....+.+.+|+++|. ..|.+++..||.++..++...|..|...+ +.|+
T Consensus 25 l~~~dw~~----il~icD~In~-----~~~~~k~a~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh~evas~~Fl 95 (153)
T d1elka_ 25 LQSEDWAL----NMEICDIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 95 (153)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCcccHHH----HHHHHHHHhC-----CCcCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHH
Confidence 45568985 3335555542 12223789999999985 56999999999999999999999986542 3455
Q ss_pred HHHH-HHhC---CCcHHHHHHHHHHHHHHHHhcC
Q 000167 939 SDIL-KCLG---DNKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 939 p~ll-~~L~---D~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
-.++ ..+. +....|++-+...+..|.....
T Consensus 96 ~~ll~~~~~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (153)
T d1elka_ 96 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 129 (153)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 5543 2222 2345699999999999988764
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