Citrus Sinensis ID: 000173
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1935 | 2.2.26 [Sep-21-2011] | |||||||
| Q14690 | 1871 | Protein RRP5 homolog OS=H | yes | no | 0.909 | 0.940 | 0.289 | 0.0 | |
| O74835 | 1690 | rRNA biogenesis protein r | yes | no | 0.617 | 0.707 | 0.279 | 1e-121 | |
| A7MB10 | 1874 | Protein RRP5 homolog OS=B | yes | no | 0.672 | 0.694 | 0.279 | 1e-117 | |
| Q05022 | 1729 | rRNA biogenesis protein R | yes | no | 0.581 | 0.650 | 0.289 | 1e-117 | |
| Q6NS46 | 1862 | Protein RRP5 homolog OS=M | yes | no | 0.677 | 0.703 | 0.273 | 1e-117 | |
| O06147 | 481 | 30S ribosomal protein S1 | yes | no | 0.180 | 0.727 | 0.236 | 4e-15 | |
| O84100 | 569 | 30S ribosomal protein S1 | yes | no | 0.174 | 0.594 | 0.247 | 1e-14 | |
| P46836 | 481 | 30S ribosomal protein S1 | yes | no | 0.180 | 0.727 | 0.234 | 2e-14 | |
| Q4L6I1 | 392 | 30S ribosomal protein S1 | yes | no | 0.086 | 0.428 | 0.310 | 5e-14 | |
| Q9Z8M3 | 580 | 30S ribosomal protein S1 | yes | no | 0.169 | 0.565 | 0.246 | 9e-14 |
| >sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/1976 (28%), Positives = 951/1976 (48%), Gaps = 216/1976 (10%)
Query: 54 FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
FPRGG + + E+ + E D F+ + E G K+ K +K KT++ E +
Sbjct: 8 FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63
Query: 110 LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
S K R +I +++++ GM++ G V EVNE +LVI LP GL+G + + D
Sbjct: 64 ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117
Query: 169 PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
NE E L LP +F G LV C+V L + GK+ + LSL +
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175
Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
+ LS E ++ GM+LT V S+EDHGY++ G+ FLP E N G +K
Sbjct: 176 NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235
Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
G L +V + VV LS VS + + + +++ L+PG++V +VQ + G
Sbjct: 236 GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
+ L+FLT+FTG VD HL T + N + V A IL V P +R V L+L P L
Sbjct: 296 LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350
Query: 397 HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
P + + +G + D V + G + + AY +S +++ +
Sbjct: 351 QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407
Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
+ +K G+ + RI+ + ++ LA L+ S E + D++PG VVKG V+ + S+G
Sbjct: 408 PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467
Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
+V+ ++ L P H+++ + P KK+ +G E+ RVL ++K++ +T KKTL++
Sbjct: 468 MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527
Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
SKL +++ YA+A L THG+I +++ +GC V+FYN VQG P+ EL + +P +++
Sbjct: 528 SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587
Query: 632 VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
GQVVK +++ P+ R+ LSF + +P S+ + +G LV V T
Sbjct: 588 TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647
Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
+ + V V+ + +PT HL+DH+ + ++ ++ G ++L L +LL
Sbjct: 648 KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706
Query: 742 KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
K +L+++ + Q P + S IHP ++ G+V +I + G F++F L+G AP++ D
Sbjct: 707 KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766
Query: 800 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
S + GQ+V + + +V+ E R+ LSL+ S C D + + LL + + LQ
Sbjct: 767 TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825
Query: 859 ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
S + ++ + G ++ V E D VV S D+ + + AG
Sbjct: 826 RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885
Query: 914 VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
VESG + IL+V + V +SL + NR+A+K ++ E HQ
Sbjct: 886 VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929
Query: 974 VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
AIV+ +++++ + SL E H ++ S N T +F ++ GQ V T+
Sbjct: 930 --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987
Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
T L + A T + K ++ KK + +G +V + IK
Sbjct: 988 TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047
Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
P + + G G IH + + DD + K+G+TVTAR+I DM K+F
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102
Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
+ ELS++PS L T S E+ GQ VT ++ Y V
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162
Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
+W + I+ ++ ++ +L ++ L+ ++F +G+A+ V+ + K LL L L
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLT 1222
Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
P + + EG++ GR+ K+ G L F ++
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKI 1255
Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
+ + Y E PL + + V+C +L + V + LSLR SS
Sbjct: 1256 GTVSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSR 1301
Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
+ + + V+ P + I+D+ +++GYV ++ G F L + V L+ S
Sbjct: 1302 TNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHV 1356
Query: 1415 YVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1468
SP K+ P GKL+ RVL + VE++ D+ + + LS
Sbjct: 1357 SQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLE 1411
Query: 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGE 1518
G + + ++ E+ E N ++ ++ V+ + R G
Sbjct: 1412 GQLTKQEERKTEAEERDQKGEKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGR 1471
Query: 1519 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSS 1578
+ + + E+ R+S K + + D+L E E EE + E +
Sbjct: 1472 ECR----ESGSEQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQT 1523
Query: 1579 VAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDE 1638
+ ++ G + + ++PPL + D E+ + + +A
Sbjct: 1524 KPAEAPRLQLSSGFAWNVGLDSLTPALPPLAESSDSEEDEKPH----------QATIKKS 1573
Query: 1639 KNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFML 1697
K R +K ++ E+E+ EE L++ P + D+F+RLV SSPNSS +W++YMAF L
Sbjct: 1574 KKERELEK---QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHL 1630
Query: 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1757
++EKAR++AERAL+TI+ REE EKLN+WVA NLEN YG+ +E++ KVF+RA+QY
Sbjct: 1631 QATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYN 1688
Query: 1758 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVV 1816
+P KV L L +Y ++E+ + A EL +M+K+F+ VW++ LL++ Q V+
Sbjct: 1689 EPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVL 1748
Query: 1817 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1876
QRAL LP +H+ I++ A LEF+ G A+R +++FE LS YPKRTD+WS+Y+D I+
Sbjct: 1749 QRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKH 1808
Query: 1877 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932
G +R +FER I LSL PK+MKF FK+YL+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1809 GSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864
|
Involved in the biogenesis of rRNA. Homo sapiens (taxid: 9606) |
| >sp|O74835|RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 390/1393 (27%), Positives = 655/1393 (47%), Gaps = 198/1393 (14%)
Query: 609 VQGFAPRSEL------GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-----K 657
+ GFA S L G+ P P Y V + RI++ LSF +
Sbjct: 424 ISGFAHISRLSDKKVAGISPNSGP---YKVDSTHEARIINYSYVDNLYILSFQQSVLNQQ 480
Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATV 713
R+ + +++G V G + + P +VV I++G + G +P+ H+AD E
Sbjct: 481 FLRIED---IEVGQFVDGTIAKLIPQGIVV-TISEGIN-GLVPSTHMADIALQFPERRFK 535
Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
+ S +K ++L + +LL+ K SL+N+ L D P + G + I
Sbjct: 536 VGSSVKC-----RVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIF 590
Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
E G V F + F P S+ + D + + VGQ++ I+ + E ++ + ++
Sbjct: 591 EDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQ 650
Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
S DA L+ E GSV+ G V + + V+V
Sbjct: 651 ---SWDAK-----------------------RLERFENIKAGSVLSGIVLQKTEDSVIVD 684
Query: 894 FEEHSDVYGFITHHQLAGATVESGSVI-----------QAAILDVAKAERLVDLSLKTVF 942
+ V G IT QL + S + + +L +++L+ LSLK
Sbjct: 685 LGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSL 742
Query: 943 IDRFREANSNRQAQKKKRKREASKDLGV---HQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
++ +E NR +E K G T VE + LV +P+ S Y
Sbjct: 743 VEAAKE---NRMPINITDLKEGIKYFGFVRNATTFGVFVEFC--DGLVALVPKAYISEEY 797
Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSSTAGRLLLLLKAISET 1047
V P + QSV +++ P + + + +++ +
Sbjct: 798 VPV--------PSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDI 849
Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 1105
+ + KK Y G + A +T K +L + HGR+ ++EV D+ +V+
Sbjct: 850 DNPVDETIKKTYDYVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPN 909
Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLL 1155
F G + R++ + + K K FL ELS++PS+L + K
Sbjct: 910 KPLKRFHKGDKIRVRVLGIHDSRNHKFLPISHRVSPKQFL-ELSVRPSILNMEPFSMK-- 966
Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
E G VTG+V V E ++++ + ++ ILD + EL Q+ F +GKA
Sbjct: 967 --EPQFKKGDEVTGFVNNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKA 1024
Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
+ +V +N E + + P Q G + T G + G+++ +
Sbjct: 1025 IKCYV--VNAEDSITLSAIGPLQ-GFENLT-------------PGSRLVGKVTNV--NEA 1066
Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
G ++Q+ H+ GRV ++ +D+ P + + V VL + R
Sbjct: 1067 GAILQLPGHMSGRVSRIDM-----------FDDYDILPETKFTRNNLVGVCVLSVDVPNR 1115
Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
+S+ NS S V+ K + ++DL I +G+V NV ++G F
Sbjct: 1116 KV------------ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQGLF 1163
Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
+ + L A+V + L D +++ + F + +LV G ++ ++ SKR+E++LK S +
Sbjct: 1164 VTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQS--KIK 1221
Query: 1456 SQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETI 1513
SEI +++ VG + G + +V YG+ I I+ T N+VGLCH SE+++ V NI +
Sbjct: 1222 DSSEITKTFADIAVGSNLDGTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKL 1281
Query: 1514 YRAGEKVKVKILKVDKEKRRISLGMKSSYFKN--------DADNLQMSSEEESDEAIEEV 1565
Y +G+KV+ +L VD EKRRI+LG+KSSYF + + ++++M SE++SD + EV
Sbjct: 1282 YSSGDKVRAHVLDVDSEKRRIALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEV 1341
Query: 1566 GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD--MDNGI 1623
GS + D++SE+ +L A E ++E+P NG
Sbjct: 1342 GSKD---------------DVQSEEVENLESAGDED-----------EEEEPSALQANGF 1375
Query: 1624 SQNQGHT--DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS 1681
G T D+ E + ++ K ++ + R +E + P T +FER + S
Sbjct: 1376 DWTDGSTVFDKLADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEIPSTAADFERQLLS 1435
Query: 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1741
SPNSS +WI YMA+ L++ ++++AR + +RAL TIN REE+EKLN+W+A NLE YG
Sbjct: 1436 SPNSSLLWISYMAYHLNLNELQEAREVGKRALSTINYREEDEKLNVWMALLNLEVAYGT- 1494
Query: 1742 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRV 1801
E+++ +VF+ A YCD V+ L G+ + + LADE + M+K FK VW++
Sbjct: 1495 -EDSLKEVFKEACAYCDALIVYEKLCGILIKGGKVDLADEYMQLMLKNFKQVPSVWIQYA 1553
Query: 1802 QRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1860
LL + E +++R+L SLP+ +H+ I + AILEFKNG +RGR++FEG+LS YP
Sbjct: 1554 TFLLNNDKAEKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPERGRTIFEGLLSSYP 1613
Query: 1861 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1920
KR DLW++ +D E++ D ++R LF+R ++L+L KK KF FKK+L YEK++G++E E
Sbjct: 1614 KRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKWLAYEKNIGDDEGAE 1673
Query: 1921 YVKQKAMEYVEST 1933
VK++A+EYV +
Sbjct: 1674 QVKRRAIEYVSES 1686
|
Involved in the biogenesis of rRNA. Required for the formation of 18S and 5.8S rRNA. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust.
Identities = 414/1481 (27%), Positives = 682/1481 (46%), Gaps = 180/1481 (12%)
Query: 54 FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
FPRGG + E+ + ++ E E+ +R KK +K KT++ ET
Sbjct: 8 FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKR---KKIQKGPAKTKKLKVETRQ- 63
Query: 107 LGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
S K R +I ++++ GM++ G V EVNE +L I LP GL+G + +
Sbjct: 64 ---------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTE 114
Query: 166 ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
D + NE A E+ L LP +F G LV C+V LD K K+ + LSL
Sbjct: 115 ICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNP 172
Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
+ + LS ET++ GM+LT V S+EDHGY++ G+ FLP E N G
Sbjct: 173 KNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAK 232
Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
+K G L ++ + +R VV LS VS + + + +++ L+PG++V +VQ +
Sbjct: 233 LKVGQYLNCLIEEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVT 292
Query: 334 ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
G+ L FL++F+G VD HL T + N ++V A +L V P +RAV L+L P
Sbjct: 293 PLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRP 347
Query: 394 YLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
L P + + ++G + D V G + T AY + ++ +
Sbjct: 348 VFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKK 404
Query: 451 RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
+ +K G+ + RI+ + ++ LA L+ S E + D+KPG +VKGKV+ +
Sbjct: 405 TFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIK 464
Query: 511 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
G +V+ ++ L P H+++ I P KK+ VG E+ RVL K+K++ +T KKT
Sbjct: 465 PHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKT 524
Query: 569 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
LV+SKL ++ Y +A L THG+I +++ +GC V+FYN VQG PR EL + +P S
Sbjct: 525 LVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPES 584
Query: 629 MYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDD------LVKLGSLVSGVVDVV 680
+++ GQVVK +++ P+ R+ LSF + P + E V G L V
Sbjct: 585 VFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEK 644
Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
T + + V V+ G +PT HL+DH+ + ++ ++ G ++L L +LL
Sbjct: 645 TKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLC 703
Query: 741 AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
K +L+++ + Q P S IHP ++ G+V NI + G FV+F L+G AP++ D
Sbjct: 704 RKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKF 763
Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
S + GQ+V + + +V+ E R+ LSL+ S C+ D + LEE+ +
Sbjct: 764 VTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823
Query: 856 LQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
+ S L + + G ++ +V E + G V+ F E V G + + + AG
Sbjct: 824 RSLMSNRDSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAG 881
Query: 912 ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
+E G +A IL+V + V +SL + NR+A+K K+ +
Sbjct: 882 QELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD-------- 925
Query: 972 QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
+ AIV+ ++E++ V SL E H ++ S N T +F ++ GQ V T+
Sbjct: 926 --LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEP 983
Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
T LLL ++ + T R KK + +G +V +
Sbjct: 984 GVTG--LLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTV 1041
Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
IKP + + G G IH + + DD V + + K+G+ VTAR+I DMK
Sbjct: 1042 KSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMK 1097
Query: 1132 K-SFL-----------WELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYV-- 1171
FL ELS++PS L T++ L + GQ VT ++
Sbjct: 1098 TFKFLPISHPRFIRTIPELSVRPSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKK 1157
Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK--L 1229
Y + +W + I+ ++ ++ +L ++ L+ ++F IG+A+ V+ + K L
Sbjct: 1158 YNMVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAFL 1217
Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
++ P + + +G++ GR+ K+ + GL V +GRV
Sbjct: 1218 CLSLIGPHK------------------LKKGEVAMGRVVKV-TPKEGLTVSFP---FGRV 1255
Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1349
+ VSD S F P Q V+C VL + V + LSLRS
Sbjct: 1256 GRVSM--FHVSDSYSETHLEDFVP------QQVVRCYVLSAATPV-----LTLSLRS--- 1299
Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
S TN S D + IEDL +++G+VK+V G + L +
Sbjct: 1300 --SRTNPETKSKITDP---EINSIEDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLARHP 1354
Query: 1410 NLS--DGYVESP-EKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
++S + +P ++ P GKL+ +VL + VE++L
Sbjct: 1355 HVSQHNQSKNAPYDRHLPEGKLLTAKVLRLNHQESLVELSL 1395
|
Essential for the generation of mature 18S rRNA, specifically necessary for cleavages at sites A0, 1 and 2 of the 47S precursor. Directly interacts with U3 snoRNA. Bos taurus (taxid: 9913) |
| >sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust.
Identities = 379/1310 (28%), Positives = 627/1310 (47%), Gaps = 185/1310 (14%)
Query: 690 IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
I G K ++P H++D + K G + ++ N N+ ++ K SL+N
Sbjct: 530 IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587
Query: 749 AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
+LP +A +I N + GC + F G L+GF P S+ +
Sbjct: 588 DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647
Query: 803 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
+ +GQ+V +LDV+++ RI + C K++ Q+++
Sbjct: 648 EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686
Query: 863 GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
+ +E + G ++I V E V+V + + G I L+ + +E
Sbjct: 687 DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741
Query: 917 -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
G+ + ++D R+ ++SLK+ I ++A ++ +KD+ +H
Sbjct: 742 KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798
Query: 972 QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
+ +I + V N ++ L LP Y +S K F QSV TV
Sbjct: 799 AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847
Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
L + + LL LKA S E K +GS+V+A+I +K
Sbjct: 848 LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907
Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIA----KSNK--- 1127
+L + HGR+ I EV D + + SN+K + +II KS+K
Sbjct: 908 NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967
Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
+ K+ + ELS+KPS L E+ +K L E ++IGQ +TG+V LTIS
Sbjct: 968 ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024
Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
LKA++ +LD A S E + F +G A+ V SI++E F + I
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076
Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
VDI NM T I GD + GR+ KI +++ +G + G T+ ++D
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTGISFITD----ALNDFSL 1126
Query: 1305 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1364
E D ++ + VL + + +ELSLR + S S
Sbjct: 1127 TLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRPATAKTRSIKSH------- 1171
Query: 1365 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1424
EDL IV G VKNV KG F+ LSRK++A V +S LSD Y++ +K +
Sbjct: 1172 ---------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYK 1222
Query: 1425 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIK 1477
+ V G+V++ + S R+ +TL+ +SEIN S++ GD+ G IK
Sbjct: 1223 PMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFEGTIK 1273
Query: 1478 RVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536
V +G+F+ ++NT N+ GL H++E+++ +++ ++ G++VK +LK + EK++ISL
Sbjct: 1274 SVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISL 1333
Query: 1537 GMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL 1596
+K+S+F +A +++S + ++++ + ++ ++ D D ES+ G
Sbjct: 1334 SLKASHFSKEA---ELASTTTTTTTVDQLEKEDEDEVMADA--GFNDSDSESDIGDQ--- 1385
Query: 1597 AQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK----EE 1651
+ D +P+ +G+S + G A +D+ +++ E
Sbjct: 1386 ------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTEN 1433
Query: 1652 REQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK 1704
++ + + +E +++ AP + +FERL+ +PNSS VW+ YMAF L ++++EK
Sbjct: 1434 KKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEK 1493
Query: 1705 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1764
AR +AERAL+TIN REE EKLNIW+A NLEN +G EE + +VF RA QY D +H
Sbjct: 1494 ARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHT 1551
Query: 1765 ALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQRALLS 1822
LLG+YE +E+ A EL KKF +W+ L+ +E + ++ AL +
Sbjct: 1552 KLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKA 1611
Query: 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882
LP+ HI+ + + A LEF G +RGRS+FEG++++ PKR DLW++Y+DQE++ D +
Sbjct: 1612 LPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKV 1671
Query: 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932
LFER I+ + K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1672 EDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721
|
Involved in the biogenesis of rRNA. Required for the formation of 18S and 5.8S rRNA. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 408/1493 (27%), Positives = 687/1493 (46%), Gaps = 183/1493 (12%)
Query: 54 FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
FPRGG L + E+ +V E ++R +K K KK + + +++
Sbjct: 8 FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67
Query: 107 LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
+ F ++L+++ GM++ G V EV+E +LV+ LP GL+G + +
Sbjct: 68 IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115
Query: 167 LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
D NE A E+ L LP +F G LV C+V LD E GK+ + LS+
Sbjct: 116 CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173
Query: 220 LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
+ K LS + ++ GM+LT V S+EDHGY++ G+ FL E N G
Sbjct: 174 RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233
Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
K G L VV + VV LS + VS + + +++ L+PG++V +VQ + +
Sbjct: 234 KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293
Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
G+ L+FLT+F G VD HL+ Y+ ++ V A IL V P +R V L+L P
Sbjct: 294 FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348
Query: 395 LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
LH P + + ++G + D V + G + + + AY +S +++ +
Sbjct: 349 FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405
Query: 452 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
+ +K GS + RI+ + ++ LA L+ S + D+K G VVKG V+A+
Sbjct: 406 FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465
Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
FG +V+ +K L P H+++ + P KK+ G E+ RVL ++K++ +T KKTL
Sbjct: 466 FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525
Query: 570 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
V SKL++++ Y A L THG I +++ +GC V+FYN VQG P+ EL +P ++
Sbjct: 526 VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585
Query: 630 YHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDV 679
++ GQVVK ++S P+ R+ LSF ++ +R + + V++G LV V
Sbjct: 586 FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645
Query: 680 VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
T + V ++ + +PT HL+DH + ++ ++ G ++L L ++LL
Sbjct: 646 KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704
Query: 740 SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
K +L+++ + Q P S I P ++ G+V I E G FV+F L+G +P++ D
Sbjct: 705 CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764
Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
S+ + GQ+V + + +V+ R+ LSL+ S CS S SF+ LEE
Sbjct: 765 FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824
Query: 855 MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
+ S + ++ + G V++ VHE D VV S + D+ + + AG
Sbjct: 825 IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884
Query: 913 TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
VE G + +L V + V +SL ++R K ++ R++S+ HQ
Sbjct: 885 EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929
Query: 973 TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
IV+ ++E++ V SL E H + ++ +S N T F ++ GQ V T+
Sbjct: 930 ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986
Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
T L+L ++ + ++ET K ++KK+ S
Sbjct: 987 VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044
Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
+G V I +K + + GF G IH + + DD V + + K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103
Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSI-----GQRV 1167
I K++K P F + ELS++PS L S E I GQ V
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1163
Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
T + Y V +W + I ++ ++ +L ++ L+ ++F +G+A+ V+ +
Sbjct: 1164 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1223
Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
+ L L ++ P++ + EG++ GR+ K++ GL V
Sbjct: 1224 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1264
Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
G+V L + Y E PL + + V+C +L + V + LSL
Sbjct: 1265 KIGKVSMFHLSD--------SYSEA---PLEDFCPQKIVRCYILSTAHRV-----LALSL 1308
Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
RSS + N ++ P + IED+ +++GYVK V I L +
Sbjct: 1309 RSSRTNRETKNR------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLG 1360
Query: 1405 KVLLSNLSDGYVESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
S++S+ PEKE P GKLV +VL V P+ +E++L SD+
Sbjct: 1361 LAKYSHVSECV--PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411
|
Essential for the generation of mature 18S rRNA, specifically necessary for cleavages at sites A0, 1 and 2 of the 47S precursor. Directly interacts with U3 snoRNA. Mus musculus (taxid: 10090) |
| >sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)
Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
++ + V++IGS F D +I G V G + KVD + LL I +
Sbjct: 5 TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64
Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
A+ + +P+E+ +G V VL+ KE K RL+L + +
Sbjct: 65 ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111
Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
+ ++ + + V G + +++ G GL++ IG + E++ + P G +
Sbjct: 112 AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168
Query: 1309 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1368
++ K++E+ + +V LS R+ L+ S S+
Sbjct: 169 --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202
Query: 1369 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1428
+ +L I +G V ++ + G F+ L +D V +S LS +++ P + +G
Sbjct: 203 ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257
Query: 1429 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1487
V VL V+ +RV ++LK + + + + H +G IV G++ ++ +G F+
Sbjct: 258 VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312
Query: 1488 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541
+E + GL H+SEL+E HV+ + + G+ VK++ +D E+RRISL +K +
Sbjct: 313 VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365
|
Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. Mycobacterium tuberculosis (taxid: 1773) |
| >sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)
Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
++IG+R G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316
Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
G ++I + G +H +E+ KNI DP ++G V+ VL
Sbjct: 317 PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361
Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
I + ++SL G+ T + P ++E E + V +KN
Sbjct: 362 SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401
Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
+T+ G F+ L ++ + +S++S V P + F G V +LSV+ SK++ + +
Sbjct: 402 LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461
Query: 1448 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1507
K + E+ VG + G + ++ ++G F+ ++N + GL HVSELSE
Sbjct: 462 KQLTPNPWDEIEVM----FPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516
Query: 1508 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1559
IE + G+KV K++K+D + +++SL +K + + D + EE SD
Sbjct: 517 AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567
|
Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561) |
| >sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN) GN=rpsA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)
Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
++ + V+++GS F D +I G V G + KVD + LL I +
Sbjct: 5 AVPSPQIAVNDVGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64
Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
A+ + +P+E+ +G V VL+ KE K RL+L + +
Sbjct: 65 ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111
Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
+ ++ + + V G + +++ G GL++ IG + E++ + P G +
Sbjct: 112 AWGTIEALKEKDEAVKGIVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168
Query: 1309 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1368
++ K++E+ + +V LS R+ L+ S S+
Sbjct: 169 --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202
Query: 1369 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1428
+ L I +G V ++ + G F+ L +D V +S LS +++ P + +G
Sbjct: 203 ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGNE 257
Query: 1429 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1487
V VL V+ +RV ++LK + + + + H +G IV G++ ++ +G F+
Sbjct: 258 VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312
Query: 1488 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541
+E + GL H+SEL+E HV+ + + G+ VK++ +D E+RRISL +K +
Sbjct: 313 VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365
|
Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. Mycobacterium leprae (taxid: 1769) |
| >sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
+E L+ +++G V +T+ G F+ + +D V +S LS +V+SPE +G+ V +
Sbjct: 188 LESLNAGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVDSPEDVVSVGQEVDVK 246
Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
V SVE ++R+ +++K D+ I H D++ G++ R+ ++G F+ I
Sbjct: 247 VKSVEKDAERISLSIK--DTLPTPFESIK--GQFHEDDVIEGKVVRLANFGAFVEIA-PG 301
Query: 1493 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1546
+ GL H+SE++ +H+ G++V VKIL +D+E RISL +K++ K D
Sbjct: 302 VQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKED 355
|
Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808) |
| >sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 73/401 (18%)
Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
+SIG+ G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVLGKIVKLL 316
Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
G ++I + G +H +E+ KNI DP ++G V+ VL
Sbjct: 317 PY--GAFIEIEEGIEGLIHISEMSWVKNIV-------------DPSEVVNKGDEVEAIVL 361
Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
I + ++SL G+ T + P ++E E + V +KN
Sbjct: 362 SIQKD-----EGKISL-----GLKQTERN--------PWDNIE--EKYPIGLHVNAEIKN 401
Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
+T+ G F+ L ++ + +S++S V P + F G V +LSV+ SK++ + +
Sbjct: 402 LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGV 461
Query: 1448 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1507
K S ++ E + G ++ G + ++ ++G F+ ++N + GL HVSELS+
Sbjct: 462 KQLSSNPWNEIE----AMFPAGTVISGVVTKITAFGAFVELQN-GIEGLIHVSELSDKPF 516
Query: 1508 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1548
IE I GE V K++K+D + +++SL +K N D
Sbjct: 517 AKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNAYD 557
|
Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. Chlamydia pneumoniae (taxid: 83558) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1935 | ||||||
| 297739784 | 1862 | unnamed protein product [Vitis vinifera] | 0.951 | 0.988 | 0.721 | 0.0 | |
| 359481849 | 1879 | PREDICTED: protein RRP5 homolog [Vitis v | 0.955 | 0.983 | 0.719 | 0.0 | |
| 356533079 | 1885 | PREDICTED: protein RRP5 homolog [Glycine | 0.966 | 0.992 | 0.650 | 0.0 | |
| 449453908 | 1898 | PREDICTED: protein RRP5 homolog [Cucumis | 0.967 | 0.986 | 0.624 | 0.0 | |
| 240255326 | 1896 | RNA binding protein [Arabidopsis thalian | 0.950 | 0.969 | 0.624 | 0.0 | |
| 10998136 | 1765 | pre-rRNA processing protein RRP5 [Arabid | 0.902 | 0.989 | 0.628 | 0.0 | |
| 297833988 | 1843 | S1 RNA-binding domain-containing protein | 0.853 | 0.895 | 0.631 | 0.0 | |
| 222636634 | 1898 | hypothetical protein OsJ_23484 [Oryza sa | 0.918 | 0.936 | 0.564 | 0.0 | |
| 242043296 | 1862 | hypothetical protein SORBIDRAFT_02g00600 | 0.893 | 0.928 | 0.561 | 0.0 | |
| 218199275 | 1848 | hypothetical protein OsI_25303 [Oryza sa | 0.893 | 0.935 | 0.548 | 0.0 |
| >gi|297739784|emb|CBI29966.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2731 bits (7079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1386/1922 (72%), Positives = 1600/1922 (83%), Gaps = 81/1922 (4%)
Query: 18 KFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAE 77
K ASK FK +Q N+AV ++ LAL +DDVP FPRGGG L+++E D I AEVDAE
Sbjct: 18 KLRGASKKPFKPRMRQ-NEAVPSESLALQMEDDVPDFPRGGGSLLSRQEHDAIRAEVDAE 76
Query: 78 FEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKL 137
FEA ER KKNK KK + A E DD+GSLFGDGI+GKLPR+ANKITLKNIS GMKL
Sbjct: 77 FEAGERKTKKKNKNAKKTKKNYALE--DDMGSLFGDGITGKLPRFANKITLKNISPGMKL 134
Query: 138 WGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIV 197
WGVVAEVNEKDL I LPGGLRGL RA++A DP+ NEI+ E LP IFH+GQLVSC+V
Sbjct: 135 WGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFHIGQLVSCVV 194
Query: 198 LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
LQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGYILHFGLPSF
Sbjct: 195 LQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGYILHFGLPSF 254
Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
TGFLP+++ AEN I++ G +LQGV+RSID+ KVVYLSSDPDT+SKCVTKDLKGISID
Sbjct: 255 TGFLPKSSQAEN--IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVTKDLKGISID 312
Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
LL+PGMMV+ RVQS ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYNQ+KKVNARI
Sbjct: 313 LLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYNQNKKVNARI 372
Query: 378 LFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
LF+DP++RAVGLTLNP+L++N+APP VK GDIYD SKV+RVDRGLGLLL++PSTP STP
Sbjct: 373 LFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLEVPSTPASTP 432
Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
YVT+ DVA+EEVRK+EKKYKEGS VRVRILGFR+LEGLA G LKASAFEG VFTHSDVK
Sbjct: 433 TYVTLFDVADEEVRKMEKKYKEGSHVRVRILGFRNLEGLAMGTLKASAFEGSVFTHSDVK 492
Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
PGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAEL+FRVLG K
Sbjct: 493 PGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAELIFRVLGCK 552
Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
SKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNGVQGFAP SE
Sbjct: 553 SKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNGVQGFAPSSE 612
Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 677
LGL+PGC S MYHVGQVVKCR+ S+PASRRINLSF++KPTR+SEDD+VKLGS+V GVV
Sbjct: 613 LGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINLSFIIKPTRISEDDMVKLGSVVGGVV 672
Query: 678 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
D VTP+A++V V AKGY KGTI TEHLADH HA +MKS +KPGYEFDQLLVLD E +N
Sbjct: 673 DRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLLVLDVEGNNF 732
Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
+LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF+PR+K +D
Sbjct: 733 ILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGFSPRNKVMDD 792
Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
QRA S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FLLEEKIA LQ
Sbjct: 793 QRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFLLEEKIAKLQ 852
Query: 858 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESG 917
S SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+QL T E G
Sbjct: 853 LSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQL---TAERG 909
Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
S +QA +LDVAK ERLVDLSLK F+DR +E +SN QA KKKR+REA K+L HQTVNAI
Sbjct: 910 STVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKELQPHQTVNAI 969
Query: 978 VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
VEIVKENYL S +KQFL+GQSVIA+VMALPS ST GRL
Sbjct: 970 VEIVKENYLASSF-------------------IARKQFLHGQSVIASVMALPSPSTVGRL 1010
Query: 1038 LLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
LL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGFHGR+HITEV
Sbjct: 1011 LLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGFHGRVHITEV 1070
Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLTVS-EIGSKL 1154
D+ NV+EN FSNF+IGQTV+ARI+AK+NK + K+ WELSIKP MLT S E+ +KL
Sbjct: 1071 CDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLTGSIEVENKL 1128
Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
+ E +S GQRVTGYVYKV+NEW LTISRH+KAQLF+LD++ EP+ELQEFQ+RF +GK
Sbjct: 1129 VDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQEFQKRFEVGK 1188
Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
AV+G+VLS NKEKKLLR+VL F N+ IH+GD +GGRISKIL GV
Sbjct: 1189 AVSGYVLSANKEKKLLRMVLHQFS-------------NLIPHIHKGDTLGGRISKILPGV 1235
Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
GGL+VQIGPHLYG+VHFTELK+ VSDPL SGY EGQFVKCKVLEI +
Sbjct: 1236 GGLLVQIGPHLYGKVHFTELKDSWVSDPL-----------SGYHEGQFVKCKVLEIGHSE 1284
Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
+GT HV+LSL SSL+GM S NS +EKI++L +M+VQGYVKNVTSKGC
Sbjct: 1285 KGTVHVDLSLWSSLNGMHSPNS------------RVEKIDNLHSDMLVQGYVKNVTSKGC 1332
Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
FI+LSRKLDA++LL+NLSDGYVE PE+EFPIGKLV+GRVLSVEPLS+RVEVTLKTS + +
Sbjct: 1333 FILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLSVEPLSRRVEVTLKTSSATS 1392
Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1514
+SE+N+ S++ VGDI+ G IKRVESYGLFITI++TN+VGLCH+SELS+DH+ NIET Y
Sbjct: 1393 VQKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMVGLCHISELSDDHISNIETKY 1452
Query: 1515 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1574
+AGE+V KILKVD+E+ RISLGMK+SY K N V S+ L
Sbjct: 1453 KAGERVAAKILKVDEERHRISLGMKNSYIKETTQNNGF------------VDDTQLSTFL 1500
Query: 1575 ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEA 1633
EN+S +Q++D+E ED VL+Q+ESRAS+ PLEV+LDD ++D+ + QN +T+E
Sbjct: 1501 ENNSREIQNLDVEYEDEEYPVLSQVESRASILPLEVDLDDVNHSNLDDAVGQNHIYTNET 1560
Query: 1634 KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYM 1693
TIDEK+ R AKKK KEE+EQEIRAAEERL+ D PRT DEFE+LVR SPNSSF+WIKYM
Sbjct: 1561 NTIDEKSKRRAKKKAKEEKEQEIRAAEERLMLNDVPRTADEFEKLVRGSPNSSFLWIKYM 1620
Query: 1694 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1753
A MLS+AD+EKARSIAERAL+TINIREE+EKLNIW+AYFNLENEYGNPPEEAVVKVFQRA
Sbjct: 1621 ALMLSLADIEKARSIAERALRTINIREESEKLNIWMAYFNLENEYGNPPEEAVVKVFQRA 1680
Query: 1754 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQ 1813
LQYCDPKKVHLALLG+YERTEQ+KLADELL KM KKFKHSCKVWLRRVQ +LKQ Q+GVQ
Sbjct: 1681 LQYCDPKKVHLALLGMYERTEQHKLADELLEKMTKKFKHSCKVWLRRVQNVLKQHQDGVQ 1740
Query: 1814 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1873
V+ RALL LPRHKHIKFISQTAILEFK+GV DRGRSMFEG+L EYPKRTDLWS+YLDQE
Sbjct: 1741 PVINRALLCLPRHKHIKFISQTAILEFKSGVPDRGRSMFEGMLREYPKRTDLWSVYLDQE 1800
Query: 1874 IRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1933
IRLGD+D+IR LFERAI+LSL P+KMKFLFKKYLEYEKS G+EERIE VK+KAMEY ST
Sbjct: 1801 IRLGDIDIIRALFERAINLSLEPRKMKFLFKKYLEYEKSQGDEERIESVKRKAMEYANST 1860
Query: 1934 LA 1935
LA
Sbjct: 1861 LA 1862
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481849|ref|XP_002276633.2| PREDICTED: protein RRP5 homolog [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2728 bits (7071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1391/1932 (71%), Positives = 1607/1932 (83%), Gaps = 84/1932 (4%)
Query: 18 KFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAE 77
K ASK FK +Q N+AV ++ LAL +DDVP FPRGGG L+++E D I AEVDAE
Sbjct: 18 KLRGASKKPFKPRMRQ-NEAVPSESLALQMEDDVPDFPRGGGSLLSRQEHDAIRAEVDAE 76
Query: 78 FEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKL 137
FEA ER KKNK KK + A E DD+GSLFGDGI+GKLPR+ANKITLKNIS GMKL
Sbjct: 77 FEAGERKTKKKNKNAKKTKKNYALE--DDMGSLFGDGITGKLPRFANKITLKNISPGMKL 134
Query: 138 WGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIV 197
WGVVAEVNEKDL I LPGGLRGL RA++A DP+ NEI+ E LP IFH+GQLVSC+V
Sbjct: 135 WGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFHIGQLVSCVV 194
Query: 198 LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
LQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGYILHFGLPSF
Sbjct: 195 LQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGYILHFGLPSF 254
Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
TGFLP+++ A+ + I++ G +LQGV+RSID+ KVVYLSSDPDT+SKCVTKDLKGISID
Sbjct: 255 TGFLPKSSQADQN-IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVTKDLKGISID 313
Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
LL+PGMMV+ RVQS ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYNQ+KKVNARI
Sbjct: 314 LLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYNQNKKVNARI 373
Query: 378 LFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
LF+DP++RAVGLTLNP+L++N+APP VK GDIYD SKV+RVDRGLGLLL++PSTP STP
Sbjct: 374 LFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLEVPSTPASTP 433
Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
YVT YKEGS VRVRILGFR+LEGLA G LKASAFEG VFTHSDVK
Sbjct: 434 TYVT---------------YKEGSHVRVRILGFRNLEGLAMGTLKASAFEGSVFTHSDVK 478
Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
PGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAEL+FRVLG K
Sbjct: 479 PGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAELIFRVLGCK 538
Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
SKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNGVQGFAP SE
Sbjct: 539 SKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNGVQGFAPSSE 598
Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 677
LGL+PGC S MYHVGQVVKCR+ S+PASRRINL +D+VKLGS+V GVV
Sbjct: 599 LGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINL-----------NDMVKLGSVVGGVV 647
Query: 678 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
D VTP+A++V V AKGY KGTI TEHLADH HA +MKS +KPGYEFDQLLVLD E +N
Sbjct: 648 DRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLLVLDVEGNNF 707
Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
+LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF+PR+K +D
Sbjct: 708 ILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGFSPRNKVMDD 767
Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
QRA S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FLLEEKIA LQ
Sbjct: 768 QRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFLLEEKIAKLQ 827
Query: 858 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESG 917
S SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+QL T E G
Sbjct: 828 LSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQL---TAERG 884
Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
S +QA +LDVAK ERLVDLSLK F+DR +E +SN QA KKKR+REA K+L HQTVNAI
Sbjct: 885 STVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKELQPHQTVNAI 944
Query: 978 VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
VEIVKENYLVLSLPEYN++IGYASVSDYNTQKF QKQFL+GQSVIA+VMALPS ST GRL
Sbjct: 945 VEIVKENYLVLSLPEYNYAIGYASVSDYNTQKFAQKQFLHGQSVIASVMALPSPSTVGRL 1004
Query: 1038 LLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
LL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGFHGR+HITEV
Sbjct: 1005 LLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGFHGRVHITEV 1064
Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLTVS-EIGSKL 1154
D+ NV+EN FSNF+IGQTV+ARI+AK+NK + K+ WELSIKP MLT S E+ +KL
Sbjct: 1065 CDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLTGSIEVENKL 1122
Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
+ E +S GQRVTGYVYKV+NEW LTISRH+KAQLF+LD++ EP+ELQEFQ+RF +GK
Sbjct: 1123 VDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQEFQKRFEVGK 1182
Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQ--DGISD-KTVDISN-------DNMQTFIHEGDIVG 1264
AV+G+VLS NKEKKLLR+VL F +G D K ++I N +N+ IH+GD +G
Sbjct: 1183 AVSGYVLSANKEKKLLRMVLHQFSVSNGTLDGKVLNIDNQHCNPPIENLIPHIHKGDTLG 1242
Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1324
GRISKIL GVGGL+VQIGPHLYG+VHFTELK+ VSDPLSGY E GQFVK
Sbjct: 1243 GRISKILPGVGGLLVQIGPHLYGKVHFTELKDSWVSDPLSGYHE-----------GQFVK 1291
Query: 1325 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1384
CKVLEI + +GT HV+LSL SSL+GM S NS +EKI++L +M+VQG
Sbjct: 1292 CKVLEIGHSEKGTVHVDLSLWSSLNGMHSPNS------------RVEKIDNLHSDMLVQG 1339
Query: 1385 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1444
YVKNVTSKGCFI+LSRKLDA++LL+NLSDGYVE PE+EFPIGKLV+GRVLSVEPLS+RVE
Sbjct: 1340 YVKNVTSKGCFILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLSVEPLSRRVE 1399
Query: 1445 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1504
VTLKTS + + +SE+N+ S++ VGDI+ G IKRVESYGLFITI++TN+VGLCH+SELS+
Sbjct: 1400 VTLKTSSATSVQKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMVGLCHISELSD 1459
Query: 1505 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEE 1564
DH+ NIET Y+AGE+V KILKVD+E+ RISLGMK+SY K N
Sbjct: 1460 DHISNIETKYKAGERVAAKILKVDEERHRISLGMKNSYIKETTQNNGF------------ 1507
Query: 1565 VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMDNGI 1623
V S+ LEN+S +Q++D+E ED VL+Q+ESRAS+ PLEV+LDD ++D+ +
Sbjct: 1508 VDDTQLSTFLENNSREIQNLDVEYEDEEYPVLSQVESRASILPLEVDLDDVNHSNLDDAV 1567
Query: 1624 SQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSP 1683
QN +T+E TIDEK+ R AKKK KEE+EQEIRAAEERL+ D PRT DEFE+LVR SP
Sbjct: 1568 GQNHIYTNETNTIDEKSKRRAKKKAKEEKEQEIRAAEERLMLNDVPRTADEFEKLVRGSP 1627
Query: 1684 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1743
NSSF+WIKYMA MLS+AD+EKARSIAERAL+TINIREE+EKLNIW+AYFNLENEYGNPPE
Sbjct: 1628 NSSFLWIKYMALMLSLADIEKARSIAERALRTINIREESEKLNIWMAYFNLENEYGNPPE 1687
Query: 1744 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803
EAVVKVFQRALQYCDPKKVHLALLG+YERTEQ+KLADELL KM KKFKHSCKVWLRRVQ
Sbjct: 1688 EAVVKVFQRALQYCDPKKVHLALLGMYERTEQHKLADELLEKMTKKFKHSCKVWLRRVQN 1747
Query: 1804 LLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1863
+LKQ Q+GVQ V+ RALL LPRHKHIKFISQTAILEFK+GV DRGRSMFEG+L EYPKRT
Sbjct: 1748 VLKQHQDGVQPVINRALLCLPRHKHIKFISQTAILEFKSGVPDRGRSMFEGMLREYPKRT 1807
Query: 1864 DLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1923
DLWS+YLDQEIRLGD+D+IR LFERAI+LSL P+KMKFLFKKYLEYEKS G+EERIE VK
Sbjct: 1808 DLWSVYLDQEIRLGDIDIIRALFERAINLSLEPRKMKFLFKKYLEYEKSQGDEERIESVK 1867
Query: 1924 QKAMEYVESTLA 1935
+KAMEY STLA
Sbjct: 1868 RKAMEYANSTLA 1879
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533079|ref|XP_003535096.1| PREDICTED: protein RRP5 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2461 bits (6377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1263/1943 (65%), Positives = 1541/1943 (79%), Gaps = 72/1943 (3%)
Query: 1 MAASSRKSQKKS-SKDGPKFNKASKNQFKNSKKQINDAVEA---QDLALPPDDDVPVFPR 56
MA S+K QKK+ S D PK +KASK FK K++ N AV A + L+LP +D+VP FPR
Sbjct: 1 MAPHSKKPQKKNDSVDKPKIDKASKKIFKPKKREQNIAVAAAKSEALSLPLEDEVPDFPR 60
Query: 57 GGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGIS 116
GG S R + EF A + + KKK K K+NE DD GSL G+GI+
Sbjct: 61 GGEFSAKGRNDYD-------EFGAEDPSKKTRKKKKGKNASGKSNEAADDWGSLSGNGIT 113
Query: 117 GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE 176
GKLPR NKITL+NI+ GMKLWGVVAEVNEKDLV+ LPGGLRGL A+DA+DPI D++IE
Sbjct: 114 GKLPRRVNKITLRNITPGMKLWGVVAEVNEKDLVVSLPGGLRGLVHASDAVDPIFDDKIE 173
Query: 177 ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
E L +F VGQLVSC+VL+LDDDKKE G RKIWLSLRLSLL+K +L+ VQEGMVL
Sbjct: 174 VGEI-FLSGVFCVGQLVSCVVLRLDDDKKEKGSRKIWLSLRLSLLHKNYNLDVVQEGMVL 232
Query: 237 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
AYVKSIEDHGYILHFGLP F GFLP+N+ A G +VK G LLQG+VRSID+ RKVVYL
Sbjct: 233 AAYVKSIEDHGYILHFGLPFFMGFLPKNSSAGWGG-EVKIGKLLQGLVRSIDKVRKVVYL 291
Query: 297 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 356
SSDPDT++K VTKDL+G+SIDLLVPGM+V+ V+SILENGVMLSFLTYFTGTVD+FHLQN
Sbjct: 292 SSDPDTITKSVTKDLRGLSIDLLVPGMLVNACVKSILENGVMLSFLTYFTGTVDLFHLQN 351
Query: 357 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKV 416
+P NWK+ ++ +KV +RILF+DP+SRAVGLTLNP+L+ NRAPPSHVK+GDIYD SKV
Sbjct: 352 IYPGKNWKDKCSESQKVVSRILFIDPSSRAVGLTLNPHLVQNRAPPSHVKIGDIYDNSKV 411
Query: 417 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
VRVDRGLGLLL++PS P TPA+V+ YKEG+ VRVRILG R+LEG+
Sbjct: 412 VRVDRGLGLLLEVPSIPEPTPAFVS---------------YKEGNHVRVRILGLRYLEGI 456
Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
ATG+LKASA E VFTHSDVKPGMVVK K+++VDSFGAIVQ PGGVKALCPL HMSE EI
Sbjct: 457 ATGVLKASALEEEVFTHSDVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEI 516
Query: 537 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
KPGKKFKVGAELVFRVLG KSKR+TVTHKKTLVKSKL I+SSYA+ATD LITHGWITKI
Sbjct: 517 SKPGKKFKVGAELVFRVLGCKSKRVTVTHKKTLVKSKLGIISSYADATDGLITHGWITKI 576
Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
E HGCFVRFYNGVQGFAPRSELGL+PG +P ++Y+VGQ VKCR++S IPASRRINL
Sbjct: 577 EVHGCFVRFYNGVQGFAPRSELGLEPGADPGTVYNVGQAVKCRVISCIPASRRINL---- 632
Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
+D+V LGSLVSG VD +T NAVVVYV A G+S+GTI EHLADH A +M S
Sbjct: 633 -------NDMVTLGSLVSGAVDRITSNAVVVYVNASGFSRGTISMEHLADHHGQAILMHS 685
Query: 717 VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
V+KPGY FDQLLVLD + +NL+LSAK SLI AQQ+P+D + IHPNSVVHGY+CN+IE+G
Sbjct: 686 VLKPGYNFDQLLVLDVKGNNLILSAKSSLIKHAQQIPADINQIHPNSVVHGYICNLIESG 745
Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
CFVRFLG LTGFAPR+KA D Q++++ + YY+GQSVRSNI +V+SETGR+TLSLKQ+ CS
Sbjct: 746 CFVRFLGHLTGFAPRNKAADDQKSNILEAYYIGQSVRSNISNVSSETGRVTLSLKQTACS 805
Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
STDASF+Q++FL+++KIA L+ S+ KW EGF IG V +GKV D G+V+SFE
Sbjct: 806 STDASFIQDYFLMDDKIARLEYCGSGASDTKWDEGFNIGMVAKGKVKAVEDVGLVISFEH 865
Query: 897 HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
++DV+GFI ++QLAG +ESGS+++A +LDV KA++LV+L+LK FI+R +E++ +R
Sbjct: 866 YNDVFGFIANYQLAGTILESGSIVEALVLDVGKADKLVELTLKPEFINRSKESSISR-TN 924
Query: 957 KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
KKKR+REASKDL +HQTVNA+VEIVKENYLVLS+PE +++IGYASVSDYN Q+FP KQ+
Sbjct: 925 KKKRRREASKDLVLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNAQRFPHKQYQ 984
Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
NGQSV+ATVMALPS T+GRLLLL+ ++ET +SS + KK S VG+LV+AEIT+IK
Sbjct: 985 NGQSVVATVMALPSPETSGRLLLLVDVVNETSSSSKRTKKKSSYK-VGTLVEAEITDIKT 1043
Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD-MKKSFL 1135
LEL+LKFG G +GRIHITEV NV+EN FS++K+GQTVTARI+AK N+ D +K
Sbjct: 1044 LELKLKFGFGLYGRIHITEVY--YGNVLENPFSSYKVGQTVTARIVAKPNESDGNRKGSQ 1101
Query: 1136 WELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
WELS++P M+T S+I + E + IGQ V GYVYKV++EW LTISR+++AQL+IL
Sbjct: 1102 WELSVRPEMVTGSSDIDD--VSENLEFKIGQCVAGYVYKVESEWVWLTISRNVRAQLYIL 1159
Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD---GISDKTV-DISN 1250
DSA EPSEL++FQ R+H+G+ V+GH+LS+N EKKLLRLV+RPF G S++ + ++ +
Sbjct: 1160 DSATEPSELEDFQNRYHVGQPVSGHILSVNMEKKLLRLVVRPFSTLSCGTSEEPLTNVVD 1219
Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
++ ++HEGDI+GGR+SKIL GVGGL+VQ+GP YG+VHFTEL + V DPLSGY E Q
Sbjct: 1220 KDLTAYVHEGDILGGRVSKILPGVGGLLVQVGPRTYGKVHFTELADTWVPDPLSGYHEEQ 1279
Query: 1311 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
FVKC VLE+S TV+GT HV+LSL SS +S ++ V+ K +
Sbjct: 1280 -----------FVKCIVLEVSHTVKGTIHVDLSLGSSNVKLSQDSA------VNANSKCV 1322
Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
EKIEDL P+MIV+GY+KNVTSKGCFIMLSRK+DAK+LLSNLS+ YV+ PEKEFP+GKLV
Sbjct: 1323 EKIEDLHPDMIVKGYIKNVTSKGCFIMLSRKIDAKILLSNLSEQYVQEPEKEFPVGKLVI 1382
Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
GRV SVEPLS RVEVTLK S + +SEI +LS HVGD+V G+IKRVES+GLFI I+N
Sbjct: 1383 GRVTSVEPLSNRVEVTLKMSTAPNIPKSEIIDLSKFHVGDVVSGRIKRVESFGLFIAIDN 1442
Query: 1491 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1550
TN+VGLCH+SE+S++ ++NIE YRAGE+VK +ILKVD+E+ RISLGMK+SY + + L
Sbjct: 1443 TNMVGLCHISEISDNRIENIEANYRAGERVKARILKVDEERHRISLGMKNSYMRGET-VL 1501
Query: 1551 QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV 1610
Q+ S+EESDE I V + + +S ++D+E E +L+Q + RA +PPL+V
Sbjct: 1502 QIPSKEESDEPI--VDGMKSITSMNSSLFGTSNIDVEDEINQFPILSQAQERADIPPLDV 1559
Query: 1611 NLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAP 1669
LDD +Q D +N SQ++ H +E ++EK+ R KKK KEERE++IRAAEERLLE D P
Sbjct: 1560 ALDDFDQFDANNANSQSEEHANEEDIVNEKHKRREKKKAKEEREKQIRAAEERLLEDDVP 1619
Query: 1670 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1729
RT DEFERL+RSSPNSSF WIKYM FM+SMADVEKARSIAERAL+TINIREENEKLNIW
Sbjct: 1620 RTADEFERLIRSSPNSSFTWIKYMDFMVSMADVEKARSIAERALRTINIREENEKLNIWK 1679
Query: 1730 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1789
AYFNLEN+YGNP EEAV+KVFQRALQY DPKKV+LALLG+YERTEQ+ LADELL KM KK
Sbjct: 1680 AYFNLENKYGNPREEAVMKVFQRALQYNDPKKVYLALLGMYERTEQHNLADELLNKMTKK 1739
Query: 1790 FKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1849
FKHSCKVWLRR+Q LLKQ ++G+Q V+ RA LSLP+HKHIKF SQTAILEFK G DRGR
Sbjct: 1740 FKHSCKVWLRRIQSLLKQNKDGIQPVIDRASLSLPKHKHIKFFSQTAILEFKVGFPDRGR 1799
Query: 1850 SMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1909
SMFE IL EYPKRTDLWS+YLDQEI+ D D+I LFERA+SLSLPPKKMKFLFKKYL+Y
Sbjct: 1800 SMFEKILREYPKRTDLWSVYLDQEIQHKDEDIIHALFERAVSLSLPPKKMKFLFKKYLDY 1859
Query: 1910 EKSVGEEERIEYVKQKAMEYVES 1932
E S G++ERIE VK+KA+EYVES
Sbjct: 1860 EMSQGDQERIESVKRKAIEYVES 1882
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453908|ref|XP_004144698.1| PREDICTED: protein RRP5 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2350 bits (6091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1224/1961 (62%), Positives = 1495/1961 (76%), Gaps = 89/1961 (4%)
Query: 1 MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
MA SRKSQ DG KFNK SK F NSKK+ ++ + + ++L +DDVP FPRGGG
Sbjct: 1 MAPPSRKSQ-----DGSKFNKHSKKPF-NSKKKTSETAKPETVSLQIEDDVPDFPRGGGG 54
Query: 61 SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
++Q + +++ AE D EF+ + + K KK+ RK DDL SL +G+ G LP
Sbjct: 55 YMSQNKGEKVRAEGDKEFQNDDLKMTTKRGKKR----RKHPSNGDDLESLLNNGVVGNLP 110
Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANED 180
+YANKITLKNI+ MK WGVVAEVN+KDLVI LPGGLRGL AA+A DPIL+ E+E E
Sbjct: 111 KYANKITLKNINPRMKFWGVVAEVNKKDLVISLPGGLRGLVSAAEAFDPILEKEVEDTEH 170
Query: 181 NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
+LLP +FHVGQLV C+VL++DDDKKE GKRKIWLSLRLS+LYK +L+ +QEGMVLT+YV
Sbjct: 171 DLLPVMFHVGQLVPCVVLKVDDDKKESGKRKIWLSLRLSMLYKDFTLDLLQEGMVLTSYV 230
Query: 241 KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
KSIEDHGYILHFGL SFTGFLP+ + + + G LLQ VVRSID+TRKVVY SSD
Sbjct: 231 KSIEDHGYILHFGLTSFTGFLPKTKQSGKKSL-LHVGQLLQCVVRSIDKTRKVVYFSSDQ 289
Query: 301 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
D VS V KDLKGISIDLL+PGMMVS RVQS LENG++LSFLTYF GTVD+FHLQN+F +
Sbjct: 290 DIVSSSVAKDLKGISIDLLIPGMMVSARVQSTLENGILLSFLTYFNGTVDMFHLQNSFHS 349
Query: 361 TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
+NWK+ YNQ+ K+NARILF+DP++RAVGLTL P+L+ N+A P HV++GDIYD +KVVRVD
Sbjct: 350 SNWKDFYNQNMKMNARILFIDPSTRAVGLTLIPHLVRNKAAPPHVRIGDIYDSAKVVRVD 409
Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
RG GLLL++PS+P STP +V+ +KEGS VRVRILGFRHLEGLA G
Sbjct: 410 RGFGLLLEVPSSPESTPTFVS---------------FKEGSRVRVRILGFRHLEGLAIGT 454
Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
LKASAFEG VF++SDVKPG +++ KVI VD FGAIVQFPGG+KALCPL HMSEFEI KP
Sbjct: 455 LKASAFEGPVFSYSDVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPR 514
Query: 541 KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
KKFKVGAEL+FRVLG KSKRITVTHKKTLVKSKL +LSSYA+AT L+THGWITKIEKHG
Sbjct: 515 KKFKVGAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIEKHG 574
Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
CFVRFYNGVQGFAPR ELG++PG +PSS YH+GQV+KCRI SS +S+RI+L
Sbjct: 575 CFVRFYNGVQGFAPRFELGIEPGSDPSSTYHIGQVIKCRITSSTHSSKRISL-------- 626
Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
+ V+LG +V+GVVD +T V +Y+ YS+G I TEHL+DH HA+ +KSV+KP
Sbjct: 627 ---NTKVELGCIVTGVVDEITETHVTLYINRTDYSRGRISTEHLSDHQAHASSIKSVLKP 683
Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
GY+FDQLLVL E +L+LSAK SLI A LPSD+SH++P S++HG++CNIIE GCFVR
Sbjct: 684 GYQFDQLLVLAIEGESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICNIIEAGCFVR 743
Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
FLGRLTGF+PR+KA+ Q+ L +TYY+GQSVRSN++DV+ ETGRITLSLKQS C STDA
Sbjct: 744 FLGRLTGFSPRNKAMQDQKLYLRETYYIGQSVRSNVVDVSGETGRITLSLKQSTCFSTDA 803
Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
SF+QE F EEKIA LQS E W E F IGSV+EG+V E D GV +SFE++ DV
Sbjct: 804 SFIQEFFSTEEKIAKLQSL----DESNWAEEFAIGSVVEGEVQEVKDIGVTISFEKYHDV 859
Query: 901 YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
+GFI H L+G+ VE+GS IQAA+LDV+K ERLVDLSLK +D++ +S+RQ +KKR
Sbjct: 860 FGFIALHGLSGSIVETGSTIQAAVLDVSKTERLVDLSLKPELVDKW-GGSSSRQTNRKKR 918
Query: 961 KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS 1020
K EA KDL ++QTV+ +VE VKENYLVLSLPE+ H+IGYAS DYNTQ+ QK F GQS
Sbjct: 919 KAEAPKDLEMNQTVHTVVEAVKENYLVLSLPEFGHAIGYASTYDYNTQRLHQKHFTVGQS 978
Query: 1021 VIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 1079
V+ATV+ALP ST GRLLLLLK+ISE T SKR++K SS +VGSLV AEI +++PLE+
Sbjct: 979 VVATVVALPCPSTFGRLLLLLKSISEAIVTPGSKRSRKNSSCEVGSLVHAEIIDVQPLEM 1038
Query: 1080 RLKFGIGFHGRIHITEVNDDKSNV----VENLFSNFKIGQTVTARIIAKSNKPDMK-KSF 1134
RLKFG+G GRIH+TE SN E FSNF++GQTV ARI+A++N K K +
Sbjct: 1039 RLKFGVGLRGRIHVTEFCAQVSNTPDEASEAPFSNFRVGQTVVARIVAEANHSASKGKGY 1098
Query: 1135 LWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
LWELS+KP +L S +G +++ E+ SIGQRVT YV V+ +WA L ++R + AQLFI
Sbjct: 1099 LWELSVKPEVLKDFSAVGGEIVNEDLGFSIGQRVTAYVSNVNGDWAWLAVTRRVSAQLFI 1158
Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR---PFQDGISD----KTV 1246
LDS+ EPSELQEF + F++GKAV+G++ +I EKK+LRLVL G SD K
Sbjct: 1159 LDSSSEPSELQEFSKHFYVGKAVSGYISNIIGEKKILRLVLHHLSAISSGKSDEENSKIS 1218
Query: 1247 DISNDNMQTFI---HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
++ D + I +EGDIVGGRISKIL GVGGL+VQIGPHL+GRVH+TEL + V DPL
Sbjct: 1219 NLPTDVCKKVICHLNEGDIVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPL 1278
Query: 1304 SGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1363
SGY E GQFVKCKV+EI+ V+GT H++LSLRSS + N + +
Sbjct: 1279 SGYKE-----------GQFVKCKVIEITHAVKGTTHIDLSLRSSAGILCQKNIECSNHEN 1327
Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
G+ KIED+ +M VQGYVKN++ KGCFIMLSR L+AK+LLSNLSDGY+++PEKEF
Sbjct: 1328 IASGR--VKIEDIHAHMEVQGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEF 1385
Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
P GKLV GR+LSVEPLSKRVEVTLK+ A + N+L + GDI+ G+IKRVES+G
Sbjct: 1386 PTGKLVRGRILSVEPLSKRVEVTLKSVTETGALRGSNNDLRSFSAGDIISGRIKRVESFG 1445
Query: 1484 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543
LFI+I+NT++VGLCHVSE+S+D V+++E Y AG+ VK K+LKVD+++ RI+LGMK SY
Sbjct: 1446 LFISIDNTDVVGLCHVSEVSDDPVESLEFRYHAGDTVKAKVLKVDEKRHRIALGMKRSYI 1505
Query: 1544 KNDADNLQMSSEEESDEAIEE---VGSYNRSSLLENSSVAVQDM-----DMESEDGGSLV 1595
+ L + EEE ++A + +G S ++SS +DM ++E E L
Sbjct: 1506 -GERSELCTNMEEEHEDAADGDNFIGETRLSMDPDSSSTKFKDMDDDFDNIEPEQ--PLR 1562
Query: 1596 LAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQ 1654
LA ESRA VP LEV LDD ++ DM S+N+ T + EKN+R KKK KEERE
Sbjct: 1563 LA--ESRALVPSLEVTLDDIDETDMVTLQSENKELTSGTDS-KEKNDRREKKKAKEEREM 1619
Query: 1655 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1714
E+RAAEERLL+ ++P T DEFE+LVRSSPNSSFVWIKYM F ADVEKARSIAERAL+
Sbjct: 1620 EVRAAEERLLQNNSPTTVDEFEKLVRSSPNSSFVWIKYMDFF--KADVEKARSIAERALR 1677
Query: 1715 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1774
TINIREENEKLN+W+AYFNLENEYGNP E+AV K+FQRALQ DPKKVHLALLG+YERT
Sbjct: 1678 TINIREENEKLNVWLAYFNLENEYGNPKEDAVTKIFQRALQCNDPKKVHLALLGMYERTN 1737
Query: 1775 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQ 1834
Q+ LADELL KMIK+FKHSCKVWLRR++ L K++Q +Q++V RALL LP+ KHIK+ISQ
Sbjct: 1738 QDNLADELLDKMIKRFKHSCKVWLRRMESLFKKKQVEIQSIVNRALLCLPKRKHIKYISQ 1797
Query: 1835 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1894
TAILEFK GVADRGRSMFEGIL EYPKRTDLWSIYLDQEIRLGD D+IR LFERAISLSL
Sbjct: 1798 TAILEFKCGVADRGRSMFEGILREYPKRTDLWSIYLDQEIRLGDKDMIRALFERAISLSL 1857
Query: 1895 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1935
PKKMKFLFKKYLEYEKSVG+EERIE VKQKA+EYVE+TLA
Sbjct: 1858 APKKMKFLFKKYLEYEKSVGDEERIESVKQKALEYVENTLA 1898
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240255326|ref|NP_187803.4| RNA binding protein [Arabidopsis thaliana] gi|332641610|gb|AEE75131.1| RNA binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2296 bits (5951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1196/1916 (62%), Positives = 1484/1916 (77%), Gaps = 77/1916 (4%)
Query: 39 EAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTER 98
EA L L +DVP FPRGGG SL+++ER++++ EVDAEF+A ER K K K+++
Sbjct: 39 EAMALQL---EDVPDFPRGGGTSLSKKEREKLYEEVDAEFDADER---VSKKSKGGKSKK 92
Query: 99 KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
+ +DDLG LFG G+ GK PRYANKIT KNIS GMKL GVV EVN+KD+VI LPGGLR
Sbjct: 93 RIPSDLDDLGLLFGGGLHGKRPRYANKITTKNISPGMKLLGVVTEVNQKDIVISLPGGLR 152
Query: 159 GLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
GL RA++ D D IE +E+ LL IF VGQLV CIVL+LDDDKKE GKRKIWLSLRL
Sbjct: 153 GLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVPCIVLELDDDKKEAGKRKIWLSLRL 211
Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-RNNLAENSGIDVKPG 277
SLL+KG S ++ Q GMV +A VKSIEDHG ILHFGLPS TGF+ ++ + SG+ K G
Sbjct: 212 SLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGLPSITGFIEISDDGNQESGM--KTG 269
Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
L+QGVV IDR RK+V+LSSDPD+V+KC+TKDL G+S DLL+PGMMV+ RVQS+LENG+
Sbjct: 270 QLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSGMSFDLLIPGMMVNARVQSVLENGI 329
Query: 338 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 397
+ FLTYF GTVD+FHL+N +WK++YNQ+K VNARILF+DP+SRAVGLTL+P+++
Sbjct: 330 LFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTLSPHVVC 389
Query: 398 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
N+APP HV GDI+D++KVVR+D+ GLLL++PS P TPAYV+ +
Sbjct: 390 NKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKPTPTPAYVS---------------F 433
Query: 458 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHSDVKPGMV K KVI+VD+FGAIVQ
Sbjct: 434 KEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIVQ 493
Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAIL 577
F GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL IL
Sbjct: 494 FSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPIL 553
Query: 578 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
SSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VVK
Sbjct: 554 SSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVK 613
Query: 638 CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
CR+ S++ ++RI L +D +KLGS+VSG++D +T AV+V V +K KG
Sbjct: 614 CRVTSAVHGTQRITL-----------NDSIKLGSIVSGIIDTITSQAVIVRVKSKSVVKG 662
Query: 698 TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
TI EHLADH E A ++ S+++PGYE D+LLVLD E +N+ LS+KYSLI A++LPSD +
Sbjct: 663 TISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDFN 722
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
+ PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSKA+D +AD+S++++VGQSVR+NI+
Sbjct: 723 QLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIV 782
Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
DVN E RITLSLKQS C+S DASF+QE+FL++EKI+ LQSS S+ WVE F IGS+
Sbjct: 783 DVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGSL 842
Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
I+G + E ND GVVV+F+ ++V GFI H + GAT+ GSV+ A +LD+++AERLVDLS
Sbjct: 843 IKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLVDLS 902
Query: 938 LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
L+ ++ + SN + KKKRKR SK+L VHQ V+A+VEIVKE +LVLS+PE+ ++I
Sbjct: 903 LRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQRVSAVVEIVKEQHLVLSIPEHGYTI 960
Query: 998 GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAK 1056
GYASVSDYNTQK P KQF GQSV+A+V A+ + T+GRLLLLL ++S T ETS SKRAK
Sbjct: 961 GYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLTSGRLLLLLDSVSGTSETSRSKRAK 1020
Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 1116
KKSS +VGS+V AEITEIKP ELR+ FG F GRIHITEV + ++ + F+ F++GQ+
Sbjct: 1021 KKSSCEVGSVVHAEITEIKPFELRVNFGNSFRGRIHITEVLVNDASTSDEPFAKFRVGQS 1080
Query: 1117 VTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
++AR++AK D+KK+ LWELS+KP+ML SE E+ + + GQ V GYVYKVD
Sbjct: 1081 ISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFNDTQESEQLEFAAGQCVIGYVYKVD 1140
Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
EW L +SR++ A++FILD++ + EL+EF+RRF IGKAV+G+VL+ NKEKK LRLV R
Sbjct: 1141 KEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQR 1200
Query: 1236 PF-------QDGISDKT----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
P +G KT I D+ FIHEGDI+GGRISKIL GVGGL VQ+GP+
Sbjct: 1201 PLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEGDILGGRISKILPGVGGLRVQLGPY 1260
Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
++GRVHFTE+ + V DPL G+ EGQ FVKCKVLEIS + +GT+ +ELSL
Sbjct: 1261 VFGRVHFTEINDSWVPDPLDGFREGQ-----------FVKCKVLEISSSSKGTWQIELSL 1309
Query: 1345 RSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
R+SLDGMSS + S DL + D K E+IEDLSP+M VQGYVKN SKGCFI+LSR +
Sbjct: 1310 RTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNTMSKGCFIILSRTV 1368
Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1462
+AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++ +SE +
Sbjct: 1369 EAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESYD 1428
Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1522
L LHVGD++ G+I+RVE +GLFI I+ T +VGLCH+S+LS+D ++N++ Y+AGE V+
Sbjct: 1429 LKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRA 1488
Query: 1523 KILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAV 1581
KILK+D+EK+RISLGMKSSY N D D Q SE+ + + + L AV
Sbjct: 1489 KILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPINDPKSEVL-----AAV 1543
Query: 1582 QDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEK 1639
D + GG SLVLAQ+ESRAS+PPLEV+LDD E+ D D+ SQNQ A DEK
Sbjct: 1544 DDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIEETDFDS--SQNQEKLLGANK-DEK 1600
Query: 1640 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1699
+ R K+K+KEERE++I+AAE RLLE AP DEFE+LVRSSPNSSFVWIKYMAFMLS+
Sbjct: 1601 SKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEFEKLVRSSPNSSFVWIKYMAFMLSL 1660
Query: 1700 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1759
AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLENE+GNPPEE+V KVF+RA QYCDP
Sbjct: 1661 ADIEKARSIAERALRTINIREEEEKLNIWVAYFNLENEHGNPPEESVKKVFERARQYCDP 1720
Query: 1760 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRA 1819
KKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK+WLR++Q LKQ +E +Q+VV RA
Sbjct: 1721 KKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCKIWLRKIQSSLKQNEEAIQSVVNRA 1780
Query: 1820 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1879
LL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+L EYPKRTDLWS+YLDQEIRLG+
Sbjct: 1781 LLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGED 1840
Query: 1880 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1935
D+IR LFERAISLSLPPKKMKFLFKK+LEYEKSVG+EER+EYVKQ+AMEY STLA
Sbjct: 1841 DVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRAMEYANSTLA 1896
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|10998136|dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2232 bits (5784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1144/1820 (62%), Positives = 1416/1820 (77%), Gaps = 74/1820 (4%)
Query: 135 MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 194
MKL GVV EVN+KD+VI LPGGLRGL RA++ D D IE +E+ LL IF VGQLV
Sbjct: 1 MKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVP 59
Query: 195 CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 254
CIVL+LDDDKKE GKRKIWLSLRLSLL+KG S ++ Q GMV +A VKSIEDHG ILHFGL
Sbjct: 60 CIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGL 119
Query: 255 PSFTGFLP-RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG 313
PS TGF+ ++ + SG+ K G L+QGVV IDR RK+V+LSSDPD+V+KC+TKDL G
Sbjct: 120 PSITGFIEISDDGNQESGM--KTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSG 177
Query: 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
+S DLL+PGMMV+ RVQS+LENG++ FLTYF GTVD+FHL+N +WK++YNQ+K V
Sbjct: 178 MSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTV 237
Query: 374 NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
NARILF+DP+SRAVGLTL+P+++ N+APP HV GDI+D++KVVR+D+ GLLL++PS P
Sbjct: 238 NARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKP 296
Query: 434 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
TPAY D A +EV KLEKK+KEG+ +RVR+LG + +EGLA G LK SAFEG VFTH
Sbjct: 297 TPTPAYTY--DAAGDEVTKLEKKFKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTH 354
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
SDVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRV
Sbjct: 355 SDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRV 414
Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
LG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF
Sbjct: 415 LGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFV 474
Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLV 673
PR ELGL+PG +P S++HVG+VVKCR+ S++ ++RI LSFM+KP+ VSEDD +KLGS+V
Sbjct: 475 PRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSEDDSIKLGSIV 534
Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 733
SG++D +T AV+V V +K KGTI EHLADH E A ++ S+++PGYE D+LLVLD E
Sbjct: 535 SGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIE 594
Query: 734 SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
+N+ LS+KYSLI A++LPSD + + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSK
Sbjct: 595 GNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSK 654
Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 853
A+D +AD+S++++VGQSVR+NI+DVN E RITLSLKQS C+S DASF+QE+FL++EKI
Sbjct: 655 AIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKI 714
Query: 854 AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 913
+ LQSS S+ WVE F IGS+I+G + E ND GVVV+F+ ++V GFI H + GAT
Sbjct: 715 SDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGAT 774
Query: 914 VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
+ GSV+ A +LD+++AERLVDLSL+ ++ + SN + KKKRKR SK+L VHQ
Sbjct: 775 LVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQR 832
Query: 974 VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF GQSV+A+V A+ + T
Sbjct: 833 VSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLT 892
Query: 1034 AGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 1092
+GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AE
Sbjct: 893 SGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAE---------------------- 930
Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIG 1151
VND ++ + F+ F++GQ+++AR++AK D+KK+ LWELS+KP+ML SE
Sbjct: 931 ---VND--ASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN 985
Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
E+ + + GQ V GYVYKVD EW L +SR++ A++FILD++ + EL+EF+RRF
Sbjct: 986 DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP 1045
Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQTFIHEG 1260
IGKAV+G+VL+ NKEKK LRLV RP +G KT I D+ FIHEG
Sbjct: 1046 IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG 1105
Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
DI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ + V DPL G+ EGQ
Sbjct: 1106 DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQ---------- 1155
Query: 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSP 1378
FVKCKVLEIS + +GT+ +ELSLR+SLDGMSS + S DL + D K E+IEDLSP
Sbjct: 1156 -FVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSP 1213
Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
+M VQGYVKN SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEP
Sbjct: 1214 DMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEP 1273
Query: 1439 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1498
LSKR+EVTLKT ++ +SE +L LHVGD++ G+I+RVE +GLFI I+ T +VGLCH
Sbjct: 1274 LSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCH 1333
Query: 1499 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEE 1557
+S+LS+D ++N++ Y+AGE V+ KILK+D+EK+RISLGMKSSY N D D Q SE+
Sbjct: 1334 ISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDN 1393
Query: 1558 SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-E 1615
+ + + L AV D + GG SLVLAQ+ESRAS+PPLEV+LDD E
Sbjct: 1394 TSMECDPINDPKSEVL-----AAVDDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIE 1448
Query: 1616 QPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEF 1675
+ D D+ SQNQ A DEK+ R K+K+KEERE++I+AAE RLLE AP DEF
Sbjct: 1449 ETDFDS--SQNQEKLLGANK-DEKSKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEF 1505
Query: 1676 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1735
E+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLE
Sbjct: 1506 EKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLE 1565
Query: 1736 NEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK 1795
NE+GNPPEE+V KVF+RA QYCDPKKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK
Sbjct: 1566 NEHGNPPEESVKKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCK 1625
Query: 1796 VWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1855
+WLR++Q LKQ +E +Q+VV RALL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+
Sbjct: 1626 IWLRKIQSSLKQNEEAIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGV 1685
Query: 1856 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1915
L EYPKRTDLWS+YLDQEIRLG+ D+IR LFERAISLSLPPKKMKFLFKK+LEYEKSVG+
Sbjct: 1686 LREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGD 1745
Query: 1916 EERIEYVKQKAMEYVESTLA 1935
EER+EYVKQ+AMEY STLA
Sbjct: 1746 EERVEYVKQRAMEYANSTLA 1765
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833988|ref|XP_002884876.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330716|gb|EFH61135.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2126 bits (5509), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1090/1725 (63%), Positives = 1347/1725 (78%), Gaps = 74/1725 (4%)
Query: 235 VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 294
V +A VKS+EDHGYILHFGLPS +GF+ +N + +K G L+QGVV IDR RKVV
Sbjct: 169 VFSANVKSVEDHGYILHFGLPSISGFIEISNDGNQESV-MKTGQLIQGVVTKIDRDRKVV 227
Query: 295 YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
+LSSDPD+V+KC+TKDL G+S DLL+PGMMV+ RVQS+LENG++ FLTYF GTVD+FHL
Sbjct: 228 HLSSDPDSVAKCLTKDLNGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHL 287
Query: 355 QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
+N +WK++YNQ+K VNARILF+DP+SRAVGLTLNP+L+ N+APP HV GDI+D++
Sbjct: 288 KNPLSNKSWKDEYNQNKMVNARILFIDPSSRAVGLTLNPHLVCNKAPPLHVFSGDIFDEA 347
Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
KVVR+D+ GLLL++PS PV PAY++ +KEG+ +RVRILG + +E
Sbjct: 348 KVVRIDKS-GLLLELPSKPVPNPAYIS---------------FKEGNHIRVRILGLKQME 391
Query: 475 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
GLA G LK SAFEG VFTHSDV+PGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEF
Sbjct: 392 GLAIGTLKESAFEGPVFTHSDVRPGMVTKAKVISVDTFGAIVQFAGGLKAMCPLRHMSEF 451
Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
E++KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWIT
Sbjct: 452 EVMKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWIT 511
Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
KIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VVKCR+ S++ SRRI L
Sbjct: 512 KIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGSRRITL-- 569
Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
+D +KLGS+VSG+VD +T AV+V V +KG KGTI TEHLADH + A +M
Sbjct: 570 ---------NDSIKLGSIVSGIVDSITSQAVIVRVKSKGVLKGTISTEHLADHHDQAKLM 620
Query: 715 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
S+++PGYE D+LLVLD E +NL LS+KYSLI A++LPSD + + PNSVVHGYVCN+IE
Sbjct: 621 MSLLRPGYELDKLLVLDIEGNNLSLSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIE 680
Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
GCFVRFLGRLTGFAPRSKA+D RADLS++++VGQSVR+NI+DVN E RITLSLKQS
Sbjct: 681 NGCFVRFLGRLTGFAPRSKAIDDPRADLSESFFVGQSVRANIVDVNQEKSRITLSLKQSS 740
Query: 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
C+S DASF+QE+FL++EKI+ LQSS SE WVE F IGS+I+G + E ND GVVV+F
Sbjct: 741 CASVDASFVQEYFLMDEKISDLQSSDITKSEYSWVEKFSIGSLIKGTLQEQNDLGVVVNF 800
Query: 895 EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
+ ++V GFI H + GAT+ GSV+ A +LD+++AERLVDLSL+ I+ + SN Q
Sbjct: 801 DNINNVLGFIPQHHMGGATMVPGSVVNAVVLDISRAERLVDLSLRPELINNLTKEVSNSQ 860
Query: 955 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 1014
KKKRKR SK+L VHQ V+A+VEIVKE +LVLS+PE+ +++GYAS+SDYNTQK P KQ
Sbjct: 861 L-KKKRKRGISKELEVHQRVSAVVEIVKEQHLVLSIPEHGYTVGYASLSDYNTQKLPVKQ 919
Query: 1015 FLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITE 1073
F GQSV+A+V A+ + T+GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AEITE
Sbjct: 920 FSTGQSVVASVEAVQNPLTSGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAEITE 979
Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
IKP ELR+ FG F GRIHITEVND ++ + F+ F++GQ+++AR+++K D+KKS
Sbjct: 980 IKPFELRVNFGNSFRGRIHITEVND--ASTSDEPFAKFRVGQSMSARVVSKPCHTDIKKS 1037
Query: 1134 FLWELSIKPSML-TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
LWELS+KP+ML SE+ E+ + GQ V GYVYKVD EW L ISR++ A++F
Sbjct: 1038 QLWELSVKPAMLRDSSELNDIQESEQLEFVAGQCVNGYVYKVDKEWVWLAISRNVTARIF 1097
Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD-------GISDKT 1245
ILD+A E EL+EF+R F IGKAV+G+VL+ NKEK+ LRLV RP D G KT
Sbjct: 1098 ILDTACEAHELEEFERHFPIGKAVSGYVLTYNKEKRTLRLVQRPLLDIHKSIANGGGSKT 1157
Query: 1246 ----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
+ I D+ FIHEGDI+GGRISKIL GVGGL VQIGP+++GRVHFTE+ ++ V +
Sbjct: 1158 DKLDISIPGDDGTLFIHEGDILGGRISKILPGVGGLRVQIGPYVFGRVHFTEINDLWVPN 1217
Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDL 1359
PL G+ EGQ FVKCKVLEIS + +GT+ +ELSLR+SLDGMSS + S DL
Sbjct: 1218 PLDGFREGQ-----------FVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHISEDL 1266
Query: 1360 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1419
+ + D K E+ EDLS +M VQGYVKN SKGCFI+LSRK++AKV LSNL D +V+ P
Sbjct: 1267 NNN-DNVCKRFERFEDLSLDMGVQGYVKNTMSKGCFIILSRKVEAKVKLSNLCDTFVKEP 1325
Query: 1420 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1479
EKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++ +SE ++ LHVGD++ G+IKRV
Sbjct: 1326 EKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGQPKSESYDMKKLHVGDMISGRIKRV 1385
Query: 1480 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539
E YGLFI I+ +VGLCH+++LS+D ++N++ Y+AGE V KILK+D+EKRRISLGMK
Sbjct: 1386 EPYGLFIDIDQIGMVGLCHITQLSDDRIENVQARYKAGESVSAKILKLDEEKRRISLGMK 1445
Query: 1540 SSYFKNDAD-NLQMSSEEESDEAIEEVGSYNRSSLLENSSV--AVQDMDMESEDGG---- 1592
SSY N D Q SEE++DE E N N+ V AV D + GG
Sbjct: 1446 SSYLMNGDDVKAQPPSEEKADETSMECDPINDP----NTEVLAAVGDFGFQETSGGRHSG 1501
Query: 1593 -SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKE 1650
SLVLAQ++SRAS+PPLEV+LDD E+ D DN +QNQ A DEK+ R K+K+KE
Sbjct: 1502 ASLVLAQVDSRASIPPLEVDLDDIEEMDFDN--NQNQEKLLGADK-DEKSKRREKQKDKE 1558
Query: 1651 EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1710
ERE++I+AAE RLLE AP + DEFE+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAE
Sbjct: 1559 EREKKIQAAEGRLLEHHAPESADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAE 1618
Query: 1711 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1770
RAL+TINIREE EKLNIWVAYFNLENE+G+PPEEAV KVF+RA QYCDPKKV+LALLG+Y
Sbjct: 1619 RALRTINIREEEEKLNIWVAYFNLENEHGSPPEEAVKKVFERARQYCDPKKVYLALLGVY 1678
Query: 1771 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIK 1830
ERTEQ KL D+LL +M+KKFK SCK+WLR++Q L+Q +EG+Q+VV RALL LPRHKHIK
Sbjct: 1679 ERTEQYKLVDKLLDEMVKKFKQSCKIWLRKIQSSLQQNEEGIQSVVNRALLCLPRHKHIK 1738
Query: 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1890
FISQTAILEFK GVADRGRS+FEG+L EYPKRTDLWS+YLDQEIRLG+VD+IR LFERAI
Sbjct: 1739 FISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEVDVIRSLFERAI 1798
Query: 1891 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1935
SLSLPPKKMKFLFKK+LEYE+SVGEEER EYVKQ+A+EY +STLA
Sbjct: 1799 SLSLPPKKMKFLFKKFLEYERSVGEEERAEYVKQRALEYAKSTLA 1843
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222636634|gb|EEE66766.1| hypothetical protein OsJ_23484 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 2000 bits (5181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1039/1841 (56%), Positives = 1359/1841 (73%), Gaps = 63/1841 (3%)
Query: 105 DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
DDLGSLFG +GKLPR+AN++TLKNIS MKLWGVV EVN+KD+V+ LPGG+RG R+
Sbjct: 111 DDLGSLFGGATTGKLPRFANRVTLKNISPNMKLWGVVIEVNQKDIVVSLPGGMRGFVRSE 170
Query: 165 DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLY 222
+ D + +E ++ + HVGQLV CIVL++DDD KE GK +++WLSLRLS +Y
Sbjct: 171 EVHDITSQETRKDSEGSICADVVHVGQLVPCIVLRVDDDNKE-GKVNKRVWLSLRLSRIY 229
Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 282
KGLSL+ +Q+GMVLTA VKSIEDHGYILHFG+ SF+GF+P+ A+ ++ G L+Q
Sbjct: 230 KGLSLDAIQDGMVLTAQVKSIEDHGYILHFGVSSFSGFMPK---ADRESAKIESGQLIQC 286
Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
VV++ID+ R++V+LSSD D +SK + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFL
Sbjct: 287 VVKAIDKAREIVHLSSDEDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFL 346
Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
TYFTGT DIF+L N+FP+ +WK+DY ++KKVNARILFVDP++RAVGLTLN LL + P
Sbjct: 347 TYFTGTADIFNLSNSFPSGSWKDDYIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPS 406
Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
+VK G+IYD+++V+R+D+ GL L+IPS P +P +V+I DV++++V+ +EKK+KEGS
Sbjct: 407 INVKAGEIYDKARVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSM 465
Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
RVR+LG RHLEG+A G LK SAFEG VFTH+DVKPGMVV+ KV+ V+ FGAIVQF GV
Sbjct: 466 ARVRVLGVRHLEGVAIGTLKESAFEGSVFTHADVKPGMVVRAKVVTVEPFGAIVQFSSGV 525
Query: 523 KALCPLPHMSEFE-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA 581
KALCPLPHMSE E +VKP KKFKVG EL FRVLG KSKRITVT KK+LVKSKL +L+SYA
Sbjct: 526 KALCPLPHMSELEHVVKPPKKFKVGVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYA 585
Query: 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
+A L+THGWITKIEKHGCFV+FYNGVQGF RSELGL+PG E ++YHVGQVVKCR++
Sbjct: 586 DAKIGLLTHGWITKIEKHGCFVKFYNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVV 645
Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
S +PASR+IN++F++ RV + D K+GS+VSGVV+ +TP AVVV V G+ KG+I
Sbjct: 646 SVVPASRKINVTFLISTNRVIQADTPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILN 703
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
EHLADH A +K+++KPG+EF +LLVLD E NL+LSAK SLIN A +PS+ S +H
Sbjct: 704 EHLADHRGQAAQLKNLLKPGHEFSELLVLDVEGQNLVLSAKQSLINCASDIPSEISQMHA 763
Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
SV HGYVCNIIE GCFVRFLG LTGF+P+ KAVD LS +YVGQSVRS+IL+VN+
Sbjct: 764 GSVFHGYVCNIIEAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNA 823
Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
E+ R+ LSL+QS CSS D SF+Q +FLL++KI L+ S + S W+ F IG+++EG+
Sbjct: 824 ESARVKLSLQQSMCSSADCSFVQGYFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGE 883
Query: 882 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
V ++GV+++F+ H DV G I HHQL ++VE GS ++ ++D++ +V++SLK+
Sbjct: 884 VGAIEEYGVILNFQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSE 941
Query: 942 FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
+ + ++ +KKKR R A DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A
Sbjct: 942 LV-----RSVSKVGKKKKRHRAAVMDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAP 996
Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS-S 1060
+ DYN+Q P + NGQ + V ++PSS GRLLLL KA + + SS + KK
Sbjct: 997 LMDYNSQLLPCCNYENGQRITVVVGSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSD 1056
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
+ VGSLV+AEI +IKPLEL LKFG HGRIHITEV DD SN + FS +IG++V AR
Sbjct: 1057 FKVGSLVEAEIIDIKPLELLLKFGSNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQAR 1114
Query: 1121 IIAKSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
I+A++ K+ WELSI+PS+L E SIG V YV KVD EW
Sbjct: 1115 IVAEAEHSGKGGKNSKWELSIRPSLLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWI 1174
Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RP 1236
LT+SR + A LFILDS+ EP EL++FQ+R+ +G+AV G ++ +N+EK+LLRL +
Sbjct: 1175 WLTVSRDVMAHLFILDSSAEPGELEKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQS 1234
Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
+ I + +S T +GDI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +
Sbjct: 1235 LPENIGETQKPLSATVEHT--KQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVD 1292
Query: 1297 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1356
V +P+SG+ EGQ FVKCKVL++SR+ G+ V+LSLRSS+ +S S
Sbjct: 1293 SWVQEPISGFHEGQ-----------FVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQS 1340
Query: 1357 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1416
L D EKI DL P V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YV
Sbjct: 1341 RRLFDDSRIRTSRFEKINDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYV 1400
Query: 1417 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1476
E+P+ +FP+G LV GRVLS EP S +VEV+L+ + + +S+ + S+LHVGDI+ GQ+
Sbjct: 1401 ENPQNDFPVGLLVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQV 1460
Query: 1477 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536
KRVES+GLF+TI+ + LV LCHVSELS++ V +I + ++AG+K+ D+E+ R+S+
Sbjct: 1461 KRVESFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDKI-------DEERHRVSI 1513
Query: 1537 GMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL 1596
GMK SY D+ +S++E DE + E S N M + +LVL
Sbjct: 1514 GMKKSYIGPDSTG--DTSDDEDDEIVPEEISRNPV--------------MGRDRNHALVL 1557
Query: 1597 AQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEI 1656
+ ESRASV PL+V+LD+ + ++ Q + + D+K+N+ K+K +++RE EI
Sbjct: 1558 PKPESRASVLPLQVSLDESEGSDQENDNKGQEIANGTEVDDKKSNKRLKEKARKQRELEI 1617
Query: 1657 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1716
A EER L++D P+TPDEFE+LVRSSPNSSFVWI YMAF+L +ADV+KAR++AERAL+TI
Sbjct: 1618 SALEERALQRDIPQTPDEFEKLVRSSPNSSFVWINYMAFLLDLADVDKARAVAERALRTI 1677
Query: 1717 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1776
NIREE EKLN+WVAYFNLENEYG+P E+AV K+FQRALQYCDPKKVHLALL +YERTEQ
Sbjct: 1678 NIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLAMYERTEQY 1737
Query: 1777 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQ 1834
LADELL +M K+FK SCK+WLR +Q LKQ + E ++ +V+RALLSLP+ K KF+SQ
Sbjct: 1738 TLADELLDRMTKRFKTSCKIWLRCIQLSLKQSKDVECIKLIVKRALLSLPQSKRRKFLSQ 1797
Query: 1835 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1894
TAILEFK GV + GRS FE IL EYPKRTDLWS+YLDQEIRLGD ++IR LFER LSL
Sbjct: 1798 TAILEFKCGVPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDTEIIRALFERVTCLSL 1857
Query: 1895 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1935
PPKKMKFLFKKYLEYEKS G+EERIE+VKQKA+EYV+S+LA
Sbjct: 1858 PPKKMKFLFKKYLEYEKSQGDEERIEHVKQKALEYVQSSLA 1898
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242043296|ref|XP_002459519.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor] gi|241922896|gb|EER96040.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1979 bits (5128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1034/1843 (56%), Positives = 1352/1843 (73%), Gaps = 115/1843 (6%)
Query: 105 DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
DDLG+LFG +GKLPRYAN+IT+KNIS MKLWGVV EVN+KD+V+ LPGG+RG R+
Sbjct: 116 DDLGTLFGGATTGKLPRYANRITVKNISPNMKLWGVVIEVNQKDIVLSLPGGIRGFVRSE 175
Query: 165 DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG 224
D D L + +E++L + HVGQLV CIVL++DDDKKE
Sbjct: 176 DVCDIALQENRKDSENSLCAKVVHVGQLVPCIVLRVDDDKKE------------------ 217
Query: 225 LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV 284
G VL A VKSIEDHGYILHFG+ SF+GF+ +++ EN I+ + L+ VV
Sbjct: 218 --------GKVLAAQVKSIEDHGYILHFGVSSFSGFMQKDD-KENVKIERRQ--LMHCVV 266
Query: 285 RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 344
++ID+TR +V+LSSD D + K + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFLTY
Sbjct: 267 KAIDKTRAIVHLSSDEDLLCKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTY 326
Query: 345 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH 404
F+GTVDIF+L N+FP+ NWK+DY+++KKVNARILFVDP++RAVGLTLN +LLH PP +
Sbjct: 327 FSGTVDIFNLLNSFPSGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNKHLLHLEVPPIN 386
Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 464
+K GDIYD+SKV+RVD+ GL L+IPS P +P +++I DV++++ + LEK +KEGS +R
Sbjct: 387 LKAGDIYDKSKVLRVDKKAGLFLEIPS-PTPSPGFISIHDVSDKDAKNLEK-FKEGSSLR 444
Query: 465 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
VRILG R+LEG+A G +K SAFEG VFTH DVKPGM+V+ KV V+ FGAIVQF GVKA
Sbjct: 445 VRILGVRNLEGVAIGTVKDSAFEGSVFTHDDVKPGMLVRAKVATVEPFGAIVQFSSGVKA 504
Query: 525 LCPLPHMSEFE-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 583
LCPLPHMSE E +VKP KKFKVGAEL+FRVLG KSKR+TVT+KK+LVKSKL +L+SYA+A
Sbjct: 505 LCPLPHMSELEHVVKPPKKFKVGAELLFRVLGCKSKRVTVTYKKSLVKSKLDVLASYADA 564
Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
L+THGWITKIEKHGCFV+FYNGVQGF RS+LGL+ G E ++YHVGQVVKCRI++
Sbjct: 565 KIGLVTHGWITKIEKHGCFVKFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINV 624
Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
IPASR++N+SF++ RV D KLGS+VSGVV+ +TP AVVV V G+SKGTI EH
Sbjct: 625 IPASRKLNVSFVISHNRVIPIDTPKLGSIVSGVVERLTPAAVVVSV--NGFSKGTILNEH 682
Query: 704 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
LADH H D E NL+LSAK+SLIN A +PS+ S +HP
Sbjct: 683 LADH--H--------------------DIEGHNLVLSAKHSLINCANDIPSEISQMHPGV 720
Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
VVHGY+CNIIE+GCFVRFLG LTGF+P+ KAVD + LS +YVGQSVRS+IL V +ET
Sbjct: 721 VVHGYICNIIESGCFVRFLGHLTGFSPKDKAVDRRIERLSDAFYVGQSVRSHILSVTAET 780
Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
R+ LSL+QS CSSTD+SF+Q +FLL++KIA L+ S ++ W F IGS++EG+V
Sbjct: 781 ARVKLSLQQSMCSSTDSSFIQGYFLLDQKIAALKYSSND-----WAHTFGIGSLVEGEVG 835
Query: 884 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
++G++++F++H DV G I HHQL G++VE GS ++ +LD++ +V+LSLK I
Sbjct: 836 AIEEYGIILNFKDHLDVVGLIEHHQLGGSSVEVGSSVKGLVLDLSDG--VVNLSLKPELI 893
Query: 944 DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 1003
R +KKKR+R A DL +H+ VNA+VEI+K +YLVLS+PEYN++IG+A +
Sbjct: 894 GSVRNV-----GKKKKRQRAAVADLELHEEVNAVVEIIKGSYLVLSIPEYNYAIGFAPLM 948
Query: 1004 DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYD 1062
DYN+Q P + NGQ + V +PSS ++GRL+LL KA ++ + S SKRAKKKS Y
Sbjct: 949 DYNSQLLPHHHYDNGQRITVVVGNIPSSDSSGRLILLPKASAQYSALSESKRAKKKSGYK 1008
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+GSLV+AEI +IKPLEL L+FG HGRIHITEV + S+ E+ FS +IGQ +TARI+
Sbjct: 1009 IGSLVEAEIIDIKPLELLLQFGGNLHGRIHITEVPEKDSD--EHPFSKLRIGQKLTARIV 1066
Query: 1123 AKSNKPDMK--KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
A++ +P K K+F WELSI+P ++ E +E + + V YV KVD EW
Sbjct: 1067 AEA-EPSGKSGKNFKWELSIRPCIVN-GEFDELTAQKEQKHTTNEIVRAYVVKVDKEWVW 1124
Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
LT+SR++ A LF+LDS+ EPSEL+EFQ+RF G+AV G V+++N+EK+LLRL + +
Sbjct: 1125 LTVSRNVMAHLFVLDSSSEPSELKEFQQRFSEGQAVKGRVINVNREKRLLRL--KALDNQ 1182
Query: 1241 ISDKTVD-ISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
+ +D I F +GDI+GGR+ KIL GVGGLVVQIGPHL GRVH+TE+ +
Sbjct: 1183 CTQLNIDEIQQSKSSVFEQTKQGDIIGGRVQKILPGVGGLVVQIGPHLRGRVHYTEIVDS 1242
Query: 1298 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
V++PLSG+ EGQ FVKCKVL +SR+ G+ V+LSLRSS + + +N+S
Sbjct: 1243 WVTEPLSGFHEGQ-----------FVKCKVLSVSRSSEGSLRVDLSLRSS-NLIRDSNNS 1290
Query: 1358 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1417
L D+ T +EKI+DL P ++GYVKNV SKGCFIM+SR ++A++ LSNLSD YVE
Sbjct: 1291 GLVDDLATCTSRIEKIKDLLPGTEIKGYVKNVNSKGCFIMISRMVEARITLSNLSDEYVE 1350
Query: 1418 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTL-KTSDSRTASQSEINNLSNLHVGDIVIGQI 1476
+P+K+FP+G LV GRVLS +P S RVE +L KT+ S+ +I+ S+LHVGDI+ GQ+
Sbjct: 1351 NPQKDFPVGMLVHGRVLSTDPSSGRVEASLRKTTGSKLEKLDDIS-YSDLHVGDIIDGQV 1409
Query: 1477 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536
KRVES+GLF+TI + LVGLCHVSELS++ V +I + Y+AG+ VK KILK+D+++ R+SL
Sbjct: 1410 KRVESFGLFVTIRRSELVGLCHVSELSDEPVVDINSCYKAGDMVKAKILKIDEKRHRVSL 1469
Query: 1537 GMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL 1596
GMK SYF D+D ++++E DE S L + SVA Q ++ + SLV
Sbjct: 1470 GMKKSYF--DSDLTADTNDDEDDE-----------SALMDISVAPQMVEYHNR---SLVN 1513
Query: 1597 AQIESRASVPPLEVNLDD-EQPDM-DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQ 1654
+ E ASVPPL+V+LD+ E D+ DN ++ + + +KN++ KK+ +++RE
Sbjct: 1514 RKAEPIASVPPLQVSLDESECSDLEDNNNNKGPEIANGTEANAKKNDKQLKKEARKQREL 1573
Query: 1655 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1714
EI A EER L+ D P+TPD+FE+LVRSSPNSSFVWIKYMA +L +ADVEKAR++AERAL+
Sbjct: 1574 EISAMEERALQGDVPQTPDDFEKLVRSSPNSSFVWIKYMATLLDLADVEKARAVAERALK 1633
Query: 1715 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1774
TI REE EKLN+WVAYFNLENEYG+P E+AV KVFQRALQYCDPKK+HLALL +YERTE
Sbjct: 1634 TIIPREEEEKLNVWVAYFNLENEYGSPREDAVKKVFQRALQYCDPKKLHLALLAMYERTE 1693
Query: 1775 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQE--GVQAVVQRALLSLPRHKHIKFI 1832
Q +LADELL +M K+FK SCK+WL R+Q LKQ ++ ++++V RALLSLP K IKF+
Sbjct: 1694 QYELADELLDRMTKRFKTSCKIWLCRIQFALKQGKDVACIKSIVNRALLSLPHRKRIKFL 1753
Query: 1833 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892
SQTAILEFK GV + GRS FE IL EYPKRTDLWS+YLDQEIRLGD+++IR LFER L
Sbjct: 1754 SQTAILEFKCGVPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDIEVIRALFERVTCL 1813
Query: 1893 SLPPKKMKFLFKKYLEYEKSVGEE-ERIEYVKQKAMEYVESTL 1934
+LPPKKM+FLFKKYL +EKS+GE+ ERI++V+QKA+EYV+S+L
Sbjct: 1814 TLPPKKMQFLFKKYLNFEKSLGEDNERIQFVQQKAIEYVQSSL 1856
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218199275|gb|EEC81702.1| hypothetical protein OsI_25303 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 1914 bits (4958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1009/1841 (54%), Positives = 1321/1841 (71%), Gaps = 113/1841 (6%)
Query: 105 DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
DDLGSLFG +GKLPR+AN++TLKNIS MKLWGVV EVN+KD+V+ LPGG+RG R+
Sbjct: 111 DDLGSLFGGATTGKLPRFANRVTLKNISPNMKLWGVVIEVNQKDIVVSLPGGMRGFVRSE 170
Query: 165 DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLY 222
+ D + +E ++ + HVGQLV CIVL++DDD KE GK +++WLSLRLS +Y
Sbjct: 171 EVHDITSQETRKDSEGSICADVVHVGQLVPCIVLRVDDDNKE-GKVNKRVWLSLRLSRIY 229
Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 282
KGLSL+ +Q+GMVLTA VKSIEDHGYILHFG+ SF+GF+P+ A+ ++ G L+Q
Sbjct: 230 KGLSLDAIQDGMVLTAQVKSIEDHGYILHFGVSSFSGFMPK---ADRESAKIESGQLIQC 286
Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
VV++ID+ R++V+LSSD D +SK + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFL
Sbjct: 287 VVKAIDKAREIVHLSSDEDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFL 346
Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
TYFTGT DIF+L N+FP+ +WK+DY ++KKVNARILFVDP++RAVGLTLN LL + P
Sbjct: 347 TYFTGTADIFNLSNSFPSGSWKDDYIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPS 406
Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
+VK G+IYD+++V+R+D+ GL L+IPS P +P +V+I DV++++V+ +EKK+KEGS
Sbjct: 407 INVKAGEIYDKARVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSM 465
Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
RVR+LG RHLEG+A G LK SAFEG VFTH+DVKPGMVV+ KV+ V+ FGAIVQF GV
Sbjct: 466 ARVRVLGVRHLEGVAIGTLKESAFEGSVFTHADVKPGMVVRAKVVTVEPFGAIVQFSSGV 525
Query: 523 KALCPLPHMSEFE-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA 581
KALCPLPHMSE E +VKP KKFKVG EL FRVLG KSKRITVT KK+LVKSKL +L+SYA
Sbjct: 526 KALCPLPHMSELEHVVKPPKKFKVGVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYA 585
Query: 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
+A L+THGWITKIEKHGCFV+FYNGVQGF RSELGL+PG E ++YHVGQVVKCR++
Sbjct: 586 DAKIGLLTHGWITKIEKHGCFVKFYNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVV 645
Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
S +PASR+IN++F++ RV + D K+GS+VSGVV+ +TP AVVV V G+ KG+I
Sbjct: 646 SVVPASRKINVTFLISTNRVIQADTPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILN 703
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
EHLADH D E NL+LSAK SLIN A +PS+ S +H
Sbjct: 704 EHLADHR----------------------DVEGQNLVLSAKQSLINCASDIPSEISQMHA 741
Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
SV HGYVCNIIE GCFVRFLG LTGF+P+ KAVD LS +YVGQSVRS+IL+VN+
Sbjct: 742 GSVFHGYVCNIIEAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNA 801
Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
E+ R+ LSL+QS CSS D SF+Q +FLL++KI L+ S + S W+ F IG+++EG+
Sbjct: 802 ESARVKLSLQQSMCSSADCSFVQGYFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGE 861
Query: 882 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
V ++GV+++F+ H DV G I HHQL ++VE GS ++ ++D++ +V++SLK+
Sbjct: 862 VGAIEEYGVILNFQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSE 919
Query: 942 FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
+ + ++ +KKKR R A DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A
Sbjct: 920 LV-----RSVSKVGKKKKRHRAAVMDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAP 974
Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS-S 1060
+ DYN+Q P + NGQ + V ++PSS GRLLLL KA + + SS + KK
Sbjct: 975 LMDYNSQLLPCCNYENGQRITVVVGSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSD 1034
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
+ VGSLV+AEI +IKPLEL LKFG HGRIHITEV DD SN + FS +IG++V AR
Sbjct: 1035 FKVGSLVEAEIIDIKPLELLLKFGSNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQAR 1092
Query: 1121 IIAKSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
I+A++ K+ WELSI+PS+L E SIG V YV KVD EW
Sbjct: 1093 IVAEAEHSGKGGKNSKWELSIRPSLLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWI 1152
Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RP 1236
LT+SR + A LFILDS+ EP EL++FQ+R+ +G+AV G ++ +N+EK+LLRL +
Sbjct: 1153 WLTVSRDVMAHLFILDSSAEPGELEKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQS 1212
Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
+ I + +S T +GDI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +
Sbjct: 1213 LPENIGETQKPLSATVEHT--KQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVD 1270
Query: 1297 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1356
V +P+SG+ EGQ FVKCKVL++SR+ G+ V+LSLRSS+ +S S
Sbjct: 1271 SWVQEPISGFHEGQ-----------FVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQS 1318
Query: 1357 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1416
L D EKI DL P V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YV
Sbjct: 1319 RRLFDDSRIRTSRFEKINDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYV 1378
Query: 1417 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1476
E+P+ +FP+G LV GRVLS EP S +VEV+L+ + + +S+ + S+LHVGDI+ GQ+
Sbjct: 1379 ENPQNDFPVGLLVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQV 1438
Query: 1477 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536
KRVES+GLF+TI+ + LV LCHVSELS++ V +I + ++AG+K+ D+E+ R+S+
Sbjct: 1439 KRVESFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDKI-------DEERHRVSI 1491
Query: 1537 GMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL 1596
GMK SY D+ +S++E DE + E S N M + +LVL
Sbjct: 1492 GMKKSYIGPDSTG--DTSDDEDDEIVPEEISRNPV--------------MGRDRNHALVL 1535
Query: 1597 AQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEI 1656
+ ESRASV PL+V+LD+ + ++ Q + A+ D+K+N+ K+K +++RE EI
Sbjct: 1536 PKPESRASVLPLQVSLDESEGSDQENDNKGQEIANGAEVDDKKSNKRLKEKARKQRELEI 1595
Query: 1657 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1716
A EER L++D P+TPDEFE+LVRSSPNSSFVWI YMAF+L +ADV+KAR++AERAL+TI
Sbjct: 1596 SALEERALQRDIPQTPDEFEKLVRSSPNSSFVWINYMAFLLDLADVDKARAVAERALRTI 1655
Query: 1717 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1776
NIREE EKLN+WVAYFNLENEYG+P E+AV K+FQRALQYCDPKKVHLALL +YERTEQ
Sbjct: 1656 NIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLAMYERTEQY 1715
Query: 1777 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQ 1834
LADELL +M K+FK SCK+WLR +Q LKQ + E ++ +V+RALLSLP+ K IKF+SQ
Sbjct: 1716 TLADELLDRMTKRFKTSCKIWLRCIQLSLKQSKDVECIKLIVKRALLSLPQSKRIKFLSQ 1775
Query: 1835 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1894
TAILEFK GV + GRS FE IL EYPKRTDLWS+YLDQ
Sbjct: 1776 TAILEFKCGVPEEGRSRFELILREYPKRTDLWSVYLDQ---------------------- 1813
Query: 1895 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1935
FLFKKYLEYEKS G+EERIE+VKQKA+EYV+S+LA
Sbjct: 1814 ------FLFKKYLEYEKSQGDEERIEHVKQKALEYVQSSLA 1848
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1935 | ||||||
| TAIR|locus:2088644 | 1896 | RRP5 "Ribosomal RNA Processing | 0.747 | 0.763 | 0.579 | 0.0 | |
| RGD|1304933 | 1876 | Pdcd11 "programmed cell death | 0.450 | 0.464 | 0.276 | 5.4e-150 | |
| MGI|MGI:1341788 | 1862 | Pdcd11 "programmed cell death | 0.484 | 0.503 | 0.272 | 9.8e-150 | |
| UNIPROTKB|G5E5C4 | 1874 | PDCD11 "Protein RRP5 homolog" | 0.647 | 0.668 | 0.266 | 4.8e-148 | |
| UNIPROTKB|A7MB10 | 1874 | PDCD11 "Protein RRP5 homolog" | 0.647 | 0.668 | 0.266 | 6.5e-147 | |
| UNIPROTKB|F1PLK8 | 1870 | PDCD11 "Uncharacterized protei | 0.647 | 0.670 | 0.260 | 4.4e-146 | |
| UNIPROTKB|Q14690 | 1871 | PDCD11 "Protein RRP5 homolog" | 0.654 | 0.677 | 0.253 | 3.8e-144 | |
| UNIPROTKB|F1S842 | 1859 | LOC100157027 "Uncharacterized | 0.682 | 0.710 | 0.254 | 7.1e-143 | |
| UNIPROTKB|F1S843 | 1876 | LOC100157027 "Uncharacterized | 0.682 | 0.703 | 0.252 | 7.6e-143 | |
| UNIPROTKB|F1P3T9 | 1841 | PDCD11 "Uncharacterized protei | 0.364 | 0.383 | 0.281 | 1.6e-136 |
| TAIR|locus:2088644 RRP5 "Ribosomal RNA Processing 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4222 (1491.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 867/1496 (57%), Positives = 1076/1496 (71%)
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHSDVKPGMV K KVI+VD+FGAIV
Sbjct: 433 FKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIV 492
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 576
QF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL I
Sbjct: 493 QFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPI 552
Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
LSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VV
Sbjct: 553 LSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVV 612
Query: 637 KCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSK 696
KCR+ S++ ++RI L+ +K + +K K
Sbjct: 613 KCRVTSAVHGTQRITLNDSIKLGSIVSGIIDTITSQAVIVRVK-----------SKSVVK 661
Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 756
GTI EHLADH E A ++ S+++PGYE D+LLVLD E +N+ LS+KYSLI A++LPSD
Sbjct: 662 GTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDF 721
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
+ + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSKA+D +AD+S++++VGQSVR+NI
Sbjct: 722 NQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANI 781
Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
+DVN E RITLSLKQS C+S DASF+QE+FL++EKI+ LQSS S+ WVE F IGS
Sbjct: 782 VDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGS 841
Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
+I+G + E ND GVVV+F+ ++V GFI H + GAT+ GSV+ A +LD+++AERLVDL
Sbjct: 842 LIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLVDL 901
Query: 937 SLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
SL+ ++ + +L VHQ V+A+VEIVKE +LVLS+PE+ ++
Sbjct: 902 SLRPELLNNLTKEVSNSSKKKRKRGISK--ELEVHQRVSAVVEIVKEQHLVLSIPEHGYT 959
Query: 997 IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXXXXXXX 1056
IGYASVSDYNTQK P KQF GQSV+A+V A+ + T+GRLLLLL ++
Sbjct: 960 IGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLTSGRLLLLLDSVSGTSETSRSKRA 1019
Query: 1057 XX-XXYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
+VGS+V AEITEIKP ELR+ FG F GRIHITEV + ++ + F+ F++GQ
Sbjct: 1020 KKKSSCEVGSVVHAEITEIKPFELRVNFGNSFRGRIHITEVLVNDASTSDEPFAKFRVGQ 1079
Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKV 1174
+++AR++AK D+KK+ LWELS+KP+ML SE E+ + + GQ V GYVYKV
Sbjct: 1080 SISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFNDTQESEQLEFAAGQCVIGYVYKV 1139
Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
D EW L +SR++ A++FILD++ + EL+EF+RRF IGKAV+G+VL+ NKEKK LRLV
Sbjct: 1140 DKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQ 1199
Query: 1235 RPF-------QDGISDKT----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
RP +G KT I D+ FIHEGDI+GGRISKIL GVGGL VQ+GP
Sbjct: 1200 RPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEGDILGGRISKILPGVGGLRVQLGP 1259
Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
+++GRVHFTE+ + V P DPL G+ EGQFVKCKVLEIS + +GT+ +ELS
Sbjct: 1260 YVFGRVHFTEINDSWV--P---------DPLDGFREGQFVKCKVLEISSSSKGTWQIELS 1308
Query: 1344 LRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1401
LR+SLDGMSS + S DL + D K E+IEDLSP+M VQGYVKN SKGCFI+LSR
Sbjct: 1309 LRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNTMSKGCFIILSRT 1367
Query: 1402 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1461
++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++ +SE
Sbjct: 1368 VEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESY 1427
Query: 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1521
+L LHVGD++ G+I+RVE +GLFI I+ T +VGLCH+S+LS+D ++N++ Y+AGE V+
Sbjct: 1428 DLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVR 1487
Query: 1522 VKILKVDKEKRRISLGMKSSYFKNDADNLQMXXXXXXXXXXXXXXXYNRSSLLENSSVAV 1581
KILK+D+EK+RISLGMKSSY N D+ +S +L AV
Sbjct: 1488 AKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPINDPKSEVL----AAV 1543
Query: 1582 QDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDXX 1639
D + GG SLVLAQ+ESRAS+PPLEV+LDD E+ D D+ SQNQ A D
Sbjct: 1544 DDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIEETDFDS--SQNQEKLLGANK-DEK 1600
Query: 1640 XXXXXXXXXXXXXXXXXXXXXXXXXXXDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1699
AP DEFE+LVRSSPNSSFVWIKYMAFMLS+
Sbjct: 1601 SKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEFEKLVRSSPNSSFVWIKYMAFMLSL 1660
Query: 1700 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1759
AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLENE+GNPPEE+V KVF+RA QYCDP
Sbjct: 1661 ADIEKARSIAERALRTINIREEEEKLNIWVAYFNLENEHGNPPEESVKKVFERARQYCDP 1720
Query: 1760 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWXXXXXXXXXXXXEGVQAVVQRA 1819
KKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK+W E +Q+VV RA
Sbjct: 1721 KKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCKIWLRKIQSSLKQNEEAIQSVVNRA 1780
Query: 1820 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1879
LL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+L EYPKRTDLWS+YLDQEIRLG+
Sbjct: 1781 LLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGED 1840
Query: 1880 DLIRGLFERAIXXXXXXXXXXXXXXXYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1935
D+IR LFERAI +LEYEKSVG+EER+EYVKQ+AMEY STLA
Sbjct: 1841 DVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRAMEYANSTLA 1896
|
|
| RGD|1304933 Pdcd11 "programmed cell death 11" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 5.4e-150, Sum P(4) = 5.4e-150
Identities = 258/934 (27%), Positives = 429/934 (45%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
++L+++ GM++ G V EVNE +LV+ NE A E+ L
Sbjct: 75 LSLESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLE 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V LD E GK+ + E ++ GM+LT
Sbjct: 135 DLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSAEALRPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FL E N G K G L VV + V
Sbjct: 193 TVSSLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS + VS + + +++ L+PG++V +VQ + + G+ L+FLT+FTG VD H
Sbjct: 253 VSLSVEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFFTGLVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
L+ P Y+ + V A IL V P +R V L+L P LH P + + ++G +
Sbjct: 313 LE---PKK--MGSYSSKQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + + + AY +S +++ + + +K GS R RI+ +
Sbjct: 368 LDDASVEGFFEKAGAIFRLRDGVL---AYARLSHLSDSKKAFSAEAFKLGSTHRCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S + D+K G +VKGKV+A+ FG +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ + P KKF G E+ RVL ++K++ +T KKTLV SKL ++ Y +A L
Sbjct: 485 LADIMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEDAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG I +++ +GC V+FYN VQG P+ EL +P +++ GQVVK +++ P+
Sbjct: 545 THGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKE 604
Query: 649 RINLSF-MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIP------- 700
R+ LSF ++ + ++ G +P
Sbjct: 605 RMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNIPAFL 664
Query: 701 -TEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDAS 757
T HL+DH+ + ++ ++ G ++L L ++LL K +L+++ + Q P S
Sbjct: 665 PTPHLSDHVANGPLLHHWLQTGDTLHRVLCLSQSEKHILLCRKPALVSTVEGGQDPKSLS 724
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
I P ++ G+V +I + G FV+F L+G +P++ D S+ + GQ+V + +
Sbjct: 725 EIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 784
Query: 818 DVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFI 873
+V+ R+ LSL+ S CS S SF+ LEE + + S L + +
Sbjct: 785 NVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMT 844
Query: 874 IGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
G V++ V E + G VV D+ + + AG +E G + +L V +
Sbjct: 845 PGMVLDAMVQEVLENGSVVFGGGPVPDLILRASRYHRAGQELEPGQKKKVVVLHVDALKL 904
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R +A HQ IV+ ++E++ V SL E
Sbjct: 905 EVHVSLHQDLVNR--KARKLRKNSR-------------HQ---GIVQHLEESFAVASLVE 946
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 1025
H + ++ +S N T F ++ GQ V T+
Sbjct: 947 TGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980
|
|
| MGI|MGI:1341788 Pdcd11 "programmed cell death 11" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 9.8e-150, Sum P(4) = 9.8e-150
Identities = 275/1008 (27%), Positives = 453/1008 (44%)
Query: 54 FPRGGGHSLTQRERDEIHA-EVDAEFE-AVERGLHXXXXXXXXXTERKANETVDDLGSLF 111
FPRGG L + E+ E D F+ + E G + K + ++ S+
Sbjct: 8 FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLK-IEKRKSI- 65
Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXIL 171
I K ++L+++ GM++ G V EV+E +LV+
Sbjct: 66 -KSIKEKF----EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYT 120
Query: 172 D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXX 224
NE A E+ L LP +F G LV C+V LD E GK+ +
Sbjct: 121 QKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKV 178
Query: 225 XXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
+ ++ GM+LT V S+EDHGY++ G+ FL E N G K G
Sbjct: 179 LSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQY 238
Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
L VV + VV LS + VS + + +++ L+PG++V +VQ + + G+ L
Sbjct: 239 LTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQL 298
Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
+FLT+F G VD HL+ P Y+ ++ V A IL V P +R V L+L P LH
Sbjct: 299 NFLTFFKGLVDFMHLE---PKK--MGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPG 353
Query: 400 APPSHV---KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
P + + ++G + D + + AY +S +++ + +
Sbjct: 354 RPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEA 410
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+K GS + RI+ + ++ LA L+ S + D+K G VVKG V+A+ FG +V
Sbjct: 411 FKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILV 470
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
+ +K L P H+++ + P KK+ G E+ RVL ++K++ +T KKTLV SKL
Sbjct: 471 KVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKL 530
Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
++++ Y A L THG I +++ +GC V+FYN VQG P+ EL +P ++++ GQ
Sbjct: 531 SLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQ 590
Query: 635 VVKCRIMSSIPASRRINLSF-MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKG 693
VVK ++S P+ R+ LSF ++ +R + G
Sbjct: 591 VVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTG 650
Query: 694 Y--------SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 745
+ +PT HL+DH + ++ ++ G ++L L ++LL K +L
Sbjct: 651 LEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPAL 710
Query: 746 INSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
+++ + Q P S I P ++ G+V I E G FV+F L+G +P++ D S
Sbjct: 711 VSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPS 770
Query: 804 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQSSK 860
+ + GQ+V + + +V+ R+ LSL+ S CS S SF+ LEE +
Sbjct: 771 EHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMS 830
Query: 861 HNGSEL-KWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGS 918
+ S L + + G V++ VHE D VV S + D+ + + AG VE G
Sbjct: 831 NQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQ 890
Query: 919 VIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIV 978
+ +L V + V +SL ++R HQ IV
Sbjct: 891 KKKVVVLHVDMLKLEVHVSLHQDLVNRKTRKLRKSSR---------------HQ---GIV 932
Query: 979 EIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 1025
+ ++E++ V SL E H + ++ +S N T F ++ GQ V T+
Sbjct: 933 QHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980
|
|
| UNIPROTKB|G5E5C4 PDCD11 "Protein RRP5 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 954 (340.9 bits), Expect = 4.8e-148, Sum P(3) = 4.8e-148
Identities = 371/1390 (26%), Positives = 614/1390 (44%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
+ ++++ GM++ G V EVNE +L I + NE A E+ L
Sbjct: 75 LNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQ 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V LD K K+ + ET++ GM+LT
Sbjct: 135 DLVGLPELFSPGMLVRCVVSSLDTTKGS--KKNVMLSLNPKNVNRVLSAETLKPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L ++ + +R V
Sbjct: 193 TVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS VS + + + +++ L+PG++V +VQ + G+ L FL++F+G VD H
Sbjct: 253 VTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
L T + N ++V A +L V P +RAV L+L P L P + + ++G +
Sbjct: 313 LDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + T AY + ++ + + +K G+ + RI+ +
Sbjct: 368 LDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S E + D+KPG +VKGKV+ + G +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ I P KK+ VG E+ RVL K+K++ +T KKTLV+SKL ++ Y +A L
Sbjct: 485 LADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG PR EL + +P S+++ GQVVK +++ P+
Sbjct: 545 THGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKE 604
Query: 649 RINLSFMM--KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX-----XIAKGYSKGTIPT 701
R+ LSF + P + E + G +PT
Sbjct: 605 RMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPT 664
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P S I
Sbjct: 665 AHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEI 724
Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
HP ++ G+V NI + G FV+F L+G AP++ D S + GQ+V + + +V
Sbjct: 725 HPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNV 784
Query: 820 NSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIG 875
+ E R+ LSL+ S C+ D S + LEE+ + + S L + + G
Sbjct: 785 DEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 844
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 932
++ +V E + G V+ F E V G + + + AG +E G +A IL+V +
Sbjct: 845 MALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKL 902
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R DL AIV+ ++E++ V SL E
Sbjct: 903 EVHVSLCHDLVNR------------KAKKLKKGSDL------QAIVQHLEESFAVASLVE 944
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXX 1047
H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 945 TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVT-GLLLAIEGPAAKRTMRQ 1003
Query: 1048 XXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
D +G +V + IKP + + G G IH
Sbjct: 1004 TRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHA 1063
Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
+ + DD V + + K+G+ VTAR+I DMK +S + T+ E+ +
Sbjct: 1064 SHILDDVP-VGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVR 1119
Query: 1154 L--LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
L E+ ++ + K+ T++ LK + + E +F+ R
Sbjct: 1120 PSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKKSIMV-KKWLEVEIAPDFRGRIP 1178
Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK-TVDISNDNMQTFI-------HE---G 1260
+ +T LS K+L+ + FQ G + K TV ++ + F+ H+ G
Sbjct: 1179 L--LLTS--LSF----KVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHKLKKG 1230
Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
++ GR+ K+ + GL V P +GRV + + VSD Y E L +
Sbjct: 1231 EVAMGRVVKV-TPKEGLTVSF-P--FGRVGRVSMFH--VSD---SYSETH---LEDFVPQ 1278
Query: 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1380
Q V+C VL + V + LSLRSS TN S D P + IEDL
Sbjct: 1279 QVVRCYVLSAATPV-----LTLSLRSS-----RTNPETKSKITD-P--EINSIEDLEEGQ 1325
Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVAGRVLSVE 1437
+++G+VK+V G + L + ++S + +P ++ P GKL+ +VL +
Sbjct: 1326 LLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLRLN 1385
Query: 1438 PLSKRVEVTL 1447
VE++L
Sbjct: 1386 HQESLVELSL 1395
|
|
| UNIPROTKB|A7MB10 PDCD11 "Protein RRP5 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 944 (337.4 bits), Expect = 6.5e-147, Sum P(3) = 6.5e-147
Identities = 370/1390 (26%), Positives = 614/1390 (44%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
+ ++++ GM++ G V EVNE +L I + NE A E+ L
Sbjct: 75 LNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQ 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V LD K K+ + ET++ GM+LT
Sbjct: 135 DLVGLPELFSPGMLVRCVVSSLDTTKGS--KKNVMLSLNPKNVNRVLSAETLKPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L ++ + +R V
Sbjct: 193 TVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS VS + + + +++ L+PG++V +VQ + G+ L FL++F+G VD H
Sbjct: 253 VTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
L T + N ++V A +L V P +RAV L+L P L P + + ++G +
Sbjct: 313 LDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + T AY + ++ + + +K G+ + RI+ +
Sbjct: 368 LDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S E + D+KPG +VKGKV+ + G +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ I P KK+ VG E+ RVL K+K++ +T KKTLV+SKL ++ Y +A L
Sbjct: 485 LADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG PR EL + +P S+++ GQVVK +++ P+
Sbjct: 545 THGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKE 604
Query: 649 RINLSFMM--KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX-----XIAKGYSKGTIPT 701
R+ LSF + P + E + G +PT
Sbjct: 605 RMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFLPT 664
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P S I
Sbjct: 665 AHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEI 724
Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
HP ++ G+V NI + G FV+F L+G AP++ D S + GQ+V + + +V
Sbjct: 725 HPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNV 784
Query: 820 NSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIG 875
+ E R+ LSL+ S C+ D S + LEE+ + + S L + + G
Sbjct: 785 DEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 844
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 932
++ +V E + G V+ F E V G + + + AG +E G +A IL+V +
Sbjct: 845 MALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKL 902
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R DL AIV+ ++E++ V SL E
Sbjct: 903 EVHVSLCHDLVNR------------KAKKLKKGSDL------QAIVQHLEESFAVASLVE 944
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXX 1047
H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 945 TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVT-GLLLAIEGPAAKRTMRQ 1003
Query: 1048 XXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
D +G +V + IKP + + G G IH
Sbjct: 1004 TRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHA 1063
Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
+ + DD V + + K+G+ VTAR+I DMK +S + T+ E+ +
Sbjct: 1064 SHILDDVP-VGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVR 1119
Query: 1154 L--LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
L E+ ++ + K+ T++ LK + ++ E + + R
Sbjct: 1120 PSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLK-KYNMVKKWLEVEIAPDIRGRIP 1178
Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK-TVDISNDNMQTFI-------HE---G 1260
+ +T LS K+L+ + FQ G + K TV ++ + F+ H+ G
Sbjct: 1179 L--LLTS--LSF----KVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHKLKKG 1230
Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
++ GR+ K+ + GL V P +GRV + + VSD Y E L +
Sbjct: 1231 EVAMGRVVKV-TPKEGLTVSF-P--FGRVGRVSMFH--VSD---SYSETH---LEDFVPQ 1278
Query: 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1380
Q V+C VL + V + LSLRSS TN S D P + IEDL
Sbjct: 1279 QVVRCYVLSAATPV-----LTLSLRSS-----RTNPETKSKITD-P--EINSIEDLEEGQ 1325
Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVAGRVLSVE 1437
+++G+VK+V G + L + ++S + +P ++ P GKL+ +VL +
Sbjct: 1326 LLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLRLN 1385
Query: 1438 PLSKRVEVTL 1447
VE++L
Sbjct: 1386 HQESLVELSL 1395
|
|
| UNIPROTKB|F1PLK8 PDCD11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 928 (331.7 bits), Expect = 4.4e-146, Sum P(3) = 4.4e-146
Identities = 364/1399 (26%), Positives = 621/1399 (44%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
++++++ GM++ G V EV+E +LVI + NE A E+ L
Sbjct: 72 LSVESLREGMRILGCVKEVHELELVISLPNGLQGFVQATEICDAYTEQLNEQVAQEEPLK 131
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
L +F G LV C+V + E GK+ + E ++ GM+LT
Sbjct: 132 DLVCLSELFSPGMLVRCVVSSVGIT--ESGKKSVKLSLNPKNVNEVLSAEALKPGMLLTG 189
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L ++ + V
Sbjct: 190 TVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKGNGGV 249
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS P VS + + + +++ L+PG++V +VQ + G+ L+FLT+F+G VD H
Sbjct: 250 VGLSIGPSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLTFFSGLVDFMH 309
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDI 410
L T + N + V A +L V P +RAV L+L P L + + +G +
Sbjct: 310 LDPKKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPIFLQPGRSLTRLSCQHLGAV 364
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + + AY +S +++ + + YK G+ + RI+ +
Sbjct: 365 LDDVPVQSFFSKAGATFRLKDGAL---AYARLSHLSDSKNIFNAEAYKPGNIHKCRIIDY 421
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ + L+ S E F + D+KPG +VKG V+ ++ +G +V+ ++ L P H
Sbjct: 422 SQMDEMVLLSLRPSIIESQYFRYHDIKPGALVKGTVLTIEPYGMLVKVGEQIRGLIPPMH 481
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ I P KK+ +G E+ RVL ++K++ +T KKTL++SKL ++ YA+A L
Sbjct: 482 LADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGLQ 541
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG P+ EL + +P +++ GQVVK +++ P+
Sbjct: 542 THGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVVVLNCEPSKE 601
Query: 649 RINLSFMM--KPTRV-----SEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPT 701
R+ LSF + P + + + +PT
Sbjct: 602 RMLLSFKLLGDPKKEHTGHSQKKRRAISVGQLVDVKVLEKTKDGLEVSVLPHNIPAFLPT 661
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P + + I
Sbjct: 662 PHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFAEI 721
Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
HP ++ G+V +I + G FV+F L+G AP++ D S + GQ+V + + +V
Sbjct: 722 HPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNV 781
Query: 820 NSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIG 875
+ E R+ LSL+ S C D S + LEE+ + + S L + + G
Sbjct: 782 DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 841
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 932
V++ +V E + G VV F E V G + + + AG VE G + IL+V +
Sbjct: 842 MVLDLEVQEVLEDGSVV-FSE-GPVSGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKL 899
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R + HQ AIV+ ++E++ V SL E
Sbjct: 900 EVHVSLCHDLVNRKPKKLKKGSE---------------HQ---AIVQHLEESFAVASLVE 941
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXX 1051
H ++ S N T +F ++ GQ V T+ T G LL +
Sbjct: 942 TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGMT-GFLLAVEGPAAKRTVRQ 1000
Query: 1052 XXXXXXXXXYD------------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
D +G +V + IKP + + G G IH
Sbjct: 1001 TRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHA 1060
Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG-- 1151
+ + DD V + + K+G+TVTAR+I DMK +S + T+ E+
Sbjct: 1061 SHILDDVP-VGTSPTAKLKVGRTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVR 1116
Query: 1152 -SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
S+L + C ++ + ++ K+ A T+ LK + ++ E + + R
Sbjct: 1117 PSELEKDGC-TALNTHSSSHLEKIKQYQAGQTLICFLK-KYNVVKKWLEVEIAPDIRGRI 1174
Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI-------HE---G 1260
+ +T LS K+L+ + F+ G + K + D+ + F+ H+ G
Sbjct: 1175 PL--LLTS--LSF----KVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSLIGPHKLEKG 1226
Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
++ GR+ K+ + GL V P +G++ + + VSD Y E PL +
Sbjct: 1227 EVAMGRVVKV-TPKEGLTVSF-P--FGKIGKVSVFH--VSD---SYSE---TPLEDFVPQ 1274
Query: 1321 QFVKCKVLEISRTVRGTFHV-ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
+ V+C VL T HV LSLRSS TN S D P + I+D+
Sbjct: 1275 KIVRCYVLS------ATGHVLTLSLRSS-----RTNPETKSKITD-P--EINSIQDIQEG 1320
Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRV 1433
+++GYVK+V G L + V ++S Y SP K+ P GKL+ +V
Sbjct: 1321 QLLRGYVKSVQPHGVLFGLGPSVVGLVQYPHVSQ-Y--SPSKKTLYNRYLPEGKLLTAKV 1377
Query: 1434 LSVEPLSKRVEVTLKTSDS 1452
LS++ VE++ +D+
Sbjct: 1378 LSLKCQKNLVELSFLPNDT 1396
|
|
| UNIPROTKB|Q14690 PDCD11 "Protein RRP5 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 3.8e-144, Sum P(3) = 3.8e-144
Identities = 352/1386 (25%), Positives = 606/1386 (43%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
++++++ GM++ G V EVNE +LVI NE E L
Sbjct: 75 LSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLK 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V L + GK+ + E ++ GM+LT
Sbjct: 135 DLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L +V + V
Sbjct: 193 TVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS VS + + + +++ L+PG++V +VQ + G+ L+FLT+FTG VD H
Sbjct: 253 VSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDI 410
L T + N + V A IL V P +R V L+L P L P + + +G +
Sbjct: 313 LDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + + AY +S +++ + + +K G+ + RI+ +
Sbjct: 368 LDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S E + D++PG VVKG V+ + S+G +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ + P KK+ +G E+ RVL ++K++ +T KKTL++SKL +++ YA+A L
Sbjct: 485 LADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG P+ EL + +P +++ GQVVK +++ P+
Sbjct: 545 THGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKE 604
Query: 649 RINLSFMM--------KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYS-KGTI 699
R+ LSF + +P S+ ++ + +
Sbjct: 605 RMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIRAFL 664
Query: 700 PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDAS 757
PT HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P + S
Sbjct: 665 PTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFS 724
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
IHP ++ G+V +I + G F++F L+G AP++ D S + GQ+V + +
Sbjct: 725 EIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVT 784
Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGF 872
+V+ E R+ LSL+ S C D + + LL + + LQ S + ++ +
Sbjct: 785 NVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEM 843
Query: 873 IIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
G ++ V E D VV S D+ + + AG VESG + IL+V +
Sbjct: 844 TPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLK 903
Query: 932 RLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLP 991
V +SL ++R +A HQ AIV+ +++++ + SL
Sbjct: 904 LEVHVSLHQDLVNR--KARKLRKGSE-------------HQ---AIVQHLEKSFAIASLV 945
Query: 992 EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXX 1046
E H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 946 ETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT-GLLLAVEGPAAKRTMR 1004
Query: 1047 XXXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIH 1092
D +G +V + IKP + + G G IH
Sbjct: 1005 PTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIH 1064
Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
+ + DD + K+G+TVTAR+I DMK +S + T+ E+
Sbjct: 1065 ASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DMKTFKYLPISHPRFVRTIPELSV 1120
Query: 1153 KLL-FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
+ E+ ++ + K+ A T++ LK + ++ E + + R
Sbjct: 1121 RPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLK-KYNVVKKWLEVEIAPDIRGRIP 1179
Query: 1212 IG-KAVTGHVLSINKEKKLLRLVLRPFQDGI-SDKTVDISNDNMQTFIHEGDIVGGRISK 1269
+ +++ VL +K + LR G S KT+ + + EG++ GR+ K
Sbjct: 1180 LLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHKLEEGEVAMGRVVK 1239
Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
+ G L V P +G++ + ++ SD Y E PL + + V+C +L
Sbjct: 1240 VTPNEG-LTVSF-P--FGKIGTVSIFHM--SD---SYSE---TPLEDFVPQKVVRCYILS 1287
Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
+ V + LSLRSS TN + + V+ P + I+D+ +++GYV ++
Sbjct: 1288 TADNV-----LTLSLRSS-----RTNP-ETKSKVEDP--EINSIQDIKEGQLLRGYVGSI 1334
Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
G F L + S++S K P GKL+ RVL + VE++
Sbjct: 1335 QPHGVFFRLGPSVVGLARYSHVSQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELS 1394
Query: 1447 LKTSDS 1452
D+
Sbjct: 1395 FLPGDT 1400
|
|
| UNIPROTKB|F1S842 LOC100157027 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 7.1e-143, Sum P(3) = 7.1e-143
Identities = 374/1472 (25%), Positives = 639/1472 (43%)
Query: 54 FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHXXXXXXXXXTERKANETVDDLGSLFGD 113
FPRGG + + E+ + V+ + L +K+ + + L D
Sbjct: 8 FPRGGTRKIRKSEKT-LQQSVEQD------NLFDISTEEESTKRKKSQKEPATIKKLKTD 60
Query: 114 GI-SGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXIL 171
S K R +I +++ GM++ G V EVNE +LVI
Sbjct: 61 KRESSKFVREKFEILNEESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYT 120
Query: 172 D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXX 224
NE A E+ L LP +F G LV C+V L K GK+ +
Sbjct: 121 KKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLGITKS--GKKDVKLSLNPKNVNKV 178
Query: 225 XXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
E ++ GM+LT V S+EDHGY++ G+ FLP E N +K G
Sbjct: 179 LNPEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKDAKLKVGQY 238
Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
L +++ + + VV LS VS + + + +++ L+PG++V +VQ + G+ L
Sbjct: 239 LNCIIQEVKGSGGVVSLSIGNSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTL 298
Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
FL++FTG VD HL T + N + V A +L V P +R V L+L P L
Sbjct: 299 KFLSFFTGLVDFMHLDPKKAGTYFSN-----QPVRACVLCVHPRTRDVRLSLRPTFLQPG 353
Query: 400 APPSHV---KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
P + + ++G + + + T AY + ++ + +
Sbjct: 354 RPLTGLSCQQLGAVLEDVPVQGFFGNAGATFRLKD---GTLAYARFNHLSNSKKAFKPET 410
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+K G+ + RI+ + ++ + L+ S E + D+KPG +VKGKV+ + +G +V
Sbjct: 411 FKPGNIHKCRIIDYSRMDEMVLLSLRTSVIEAQFLRYHDIKPGALVKGKVLTIKPYGMLV 470
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
++ L P H+++ + P KK+ VG E+ RVL ++KR+ +T KKTLV+SKL
Sbjct: 471 NMGREIRGLVPPMHLADILMKNPEKKYHVGDEVKCRVLLCDPEAKRLMMTLKKTLVESKL 530
Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
++ YA+A L THG+I +++ +GC V+FYN VQG P+ EL + +P S Q
Sbjct: 531 PAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPESGVVSCQ 590
Query: 635 VVKCRIMSSIPASRRINLSFMMK--PTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX---- 688
VVK +++ P+ ++ LSF + P + SE
Sbjct: 591 VVKVVVLNCEPSKEKMLLSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLE 650
Query: 689 -XIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVL-DNESSNLLLSAKYSLI 746
+ + +PT HL+DH+ ++ ++ ++ G ++L L + E N LL K +L+
Sbjct: 651 VAVLPHNIRAFLPTPHLSDHVANSPLLYHWLQAGDVLHRVLCLSETEERNELLCRKPALV 710
Query: 747 NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
++ + Q P S IHP ++ G+V +I + G F++F L+G AP++ D S
Sbjct: 711 SAVEGGQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSD 770
Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKH 861
+ GQ+V + + +V+ E R+ LSL+ S C+ D S + LEE+ + +
Sbjct: 771 HFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDQATTSLLLLSQCLEEQQGVRSLMSN 830
Query: 862 NGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESG 917
S L + + G V++ +V E + G V+ F E V G + + + AG VESG
Sbjct: 831 RDSVLIQTLAEMTPGMVLDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQEVESG 888
Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAI 977
+ IL+V + V +SL+ ++R + G +Q A+
Sbjct: 889 QKKKVVILNVDMLKLEVHVSLRRDLVNRRTKKLRKG---------------GEYQ---AV 930
Query: 978 VEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGR 1036
V+ ++E + V SL E H ++ S N T +F ++ GQ V T+ T G
Sbjct: 931 VQHLEETFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLSTTEPGVT-GL 989
Query: 1037 LLLL----LKAIXXXXXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLE 1078
LL + K D +G +V + IKP
Sbjct: 990 LLAVEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKSIKPTH 1049
Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
+ + G G IH + + DD V + + K+G+ VTAR+I DMK +
Sbjct: 1050 VVVTLEDGIVGCIHASHILDDVP-VGTSPTTKLKVGKKVTARVIGGR---DMKTFKFLPI 1105
Query: 1139 SIKPSMLTVSEIGSKL--LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
S + T+ E+ + L E+ ++ + K+ A T++ LK + ++
Sbjct: 1106 SHPRFIRTIPELSVRPSELKEDGHTALNTHSVSPLEKIKQYKAGQTVTCFLK-KYNVVKK 1164
Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
E + + R + L ++ K+L+ + FQ G + K + D+ + F
Sbjct: 1165 WLEVEIAPDIRGRIPL--------LLMSLSFKVLKHPDKKFQIGQALKATVVGPDSSKAF 1216
Query: 1257 I-------HE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
+ H+ G++ GR+ K+ + GL+V P +G++ + + VSD S
Sbjct: 1217 LCLSLIGPHKMEKGEVAMGRVVKV-TPKEGLMVSF-P--FGKIGKVNIFH--VSDSFSE- 1269
Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
PL ++ + +C VL + V + LSLRSS TN S VD P
Sbjct: 1270 -----TPLETFNLKKIERCYVLSNAGPV-----LTLSLRSS-----RTNPDTKSKIVD-P 1313
Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------E 1420
+ +D+ +++GYVK++ G + L + S++S SP +
Sbjct: 1314 --EINSTQDIEEGQLLRGYVKSIQPSGVLLGLGPSVTGLARYSHVSQ---HSPTRNALYD 1368
Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
K P GKL+ +VLS+ VE++ D+
Sbjct: 1369 KYLPEGKLLTAKVLSLNRRENLVELSFLPGDT 1400
|
|
| UNIPROTKB|F1S843 LOC100157027 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 7.6e-143, Sum P(3) = 7.6e-143
Identities = 372/1471 (25%), Positives = 637/1471 (43%)
Query: 54 FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHXXXXXXXXXTERKANETVDDLGSLFGD 113
FPRGG + + E+ + V+ + L +K+ + + L D
Sbjct: 8 FPRGGTRKIRKSEKT-LQQSVEQD------NLFDISTEEESTKRKKSQKEPATIKKLKTD 60
Query: 114 GI-SGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXIL 171
S K R +I +++ GM++ G V EVNE +LVI
Sbjct: 61 KRESSKFVREKFEILNEESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYT 120
Query: 172 D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXX 224
NE A E+ L LP +F G LV C+V L K GK+ +
Sbjct: 121 KKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLGITKS--GKKDVKLSLNPKNVNKV 178
Query: 225 XXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
E ++ GM+LT V S+EDHGY++ G+ FLP E N +K G
Sbjct: 179 LNPEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKDAKLKVGQY 238
Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
L +++ + + VV LS VS + + + +++ L+PG++V +VQ + G+ L
Sbjct: 239 LNCIIQEVKGSGGVVSLSIGNSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTL 298
Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
FL++FTG VD HL T + N + V A +L V P +R V L+L P L
Sbjct: 299 KFLSFFTGLVDFMHLDPKKAGTYFSN-----QPVRACVLCVHPRTRDVRLSLRPTFLQPG 353
Query: 400 APPSHV---KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
P + + ++G + + + T AY + ++ + +
Sbjct: 354 RPLTGLSCQQLGAVLEDVPVQGFFGNAGATFRLKD---GTLAYARFNHLSNSKKAFKPET 410
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+K G+ + RI+ + ++ + L+ S E + D+KPG +VKGKV+ + +G +V
Sbjct: 411 FKPGNIHKCRIIDYSRMDEMVLLSLRTSVIEAQFLRYHDIKPGALVKGKVLTIKPYGMLV 470
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
++ L P H+++ + P KK+ VG E+ RVL ++KR+ +T KKTLV+SKL
Sbjct: 471 NMGREIRGLVPPMHLADILMKNPEKKYHVGDEVKCRVLLCDPEAKRLMMTLKKTLVESKL 530
Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
++ YA+A L THG+I +++ +GC V+FYN VQG P+ EL + +P S Q
Sbjct: 531 PAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPESGVVSCQ 590
Query: 635 VVKCRIMSSIPASRRINLSFMMK--PTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX---- 688
VVK +++ P+ ++ LSF + P + SE
Sbjct: 591 VVKVVVLNCEPSKEKMLLSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLE 650
Query: 689 -XIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 747
+ + +PT HL+DH+ ++ ++ ++ G ++L L +LL K +L++
Sbjct: 651 VAVLPHNIRAFLPTPHLSDHVANSPLLYHWLQAGDVLHRVLCLSETEGRVLLCRKPALVS 710
Query: 748 SAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
+ + Q P S IHP ++ G+V +I + G F++F L+G AP++ D S
Sbjct: 711 AVEGGQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDH 770
Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHN 862
+ GQ+V + + +V+ E R+ LSL+ S C+ D S + LEE+ + +
Sbjct: 771 FVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDQATTSLLLLSQCLEEQQGVRSLMSNR 830
Query: 863 GSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGS 918
S L + + G V++ +V E + G V+ F E V G + + + AG VESG
Sbjct: 831 DSVLIQTLAEMTPGMVLDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQEVESGQ 888
Query: 919 VIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIV 978
+ IL+V + V +SL+ ++R + G +Q A+V
Sbjct: 889 KKKVVILNVDMLKLEVHVSLRRDLVNRRTKKLRKG---------------GEYQ---AVV 930
Query: 979 EIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
+ ++E + V SL E H ++ S N T +F ++ GQ V T+ T G L
Sbjct: 931 QHLEETFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLSTTEPGVT-GLL 989
Query: 1038 LLL----LKAIXXXXXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLEL 1079
L + K D +G +V + IKP +
Sbjct: 990 LAVEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKSIKPTHV 1049
Query: 1080 RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1139
+ G G IH + + DD V + + K+G+ VTAR+I DMK +S
Sbjct: 1050 VVTLEDGIVGCIHASHILDDVP-VGTSPTTKLKVGKKVTARVIGGR---DMKTFKFLPIS 1105
Query: 1140 IKPSMLTVSEIGSKL--LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
+ T+ E+ + L E+ ++ + K+ A T++ LK + ++
Sbjct: 1106 HPRFIRTIPELSVRPSELKEDGHTALNTHSVSPLEKIKQYKAGQTVTCFLK-KYNVVKKW 1164
Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
E + + R + L ++ K+L+ + FQ G + K + D+ + F+
Sbjct: 1165 LEVEIAPDIRGRIPL--------LLMSLSFKVLKHPDKKFQIGQALKATVVGPDSSKAFL 1216
Query: 1258 -------HE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1307
H+ G++ GR+ K+ + GL+V P +G++ + + VSD S
Sbjct: 1217 CLSLIGPHKMEKGEVAMGRVVKV-TPKEGLMVSF-P--FGKIGKVNIFH--VSDSFSE-- 1268
Query: 1308 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1367
PL ++ + +C VL + V + LSLRSS TN S VD P
Sbjct: 1269 ----TPLETFNLKKIERCYVLSNAGPV-----LTLSLRSS-----RTNPDTKSKIVD-P- 1312
Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------EK 1421
+ +D+ +++GYVK++ G + L + S++S SP +K
Sbjct: 1313 -EINSTQDIEEGQLLRGYVKSIQPSGVLLGLGPSVTGLARYSHVSQ---HSPTRNALYDK 1368
Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
P GKL+ +VLS+ VE++ D+
Sbjct: 1369 YLPEGKLLTAKVLSLNRRENLVELSFLPGDT 1399
|
|
| UNIPROTKB|F1P3T9 PDCD11 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.6e-136, Sum P(3) = 1.6e-136
Identities = 210/747 (28%), Positives = 352/747 (47%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXX---XXXXXXXXXILDNEI---EANE 179
+T+K + GM G + EV +LVI +L ++ E E
Sbjct: 81 LTIKELCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAYSELLSKQVTQGELLE 140
Query: 180 D-NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
D N L ++ G LV C+V ++ K G+R I + GM+L+
Sbjct: 141 DLNSLSDLYSPGMLVRCVVTSVE--KSADGRRSIKLSINPKSVNKGLSASALTSGMLLSG 198
Query: 239 YVKSIEDHGYILHFGLPSFTGFLP----RNNL-AENSGIDVKPGLLLQGVVRSIDRTRKV 293
+V S+EDHGY++ G+ FLP +N + A G D+K G L V+ + +V
Sbjct: 199 FVSSVEDHGYLIDIGVSGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCVIEEVKNEGRV 258
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS+D V+ + + + ++ L+PG++V +VQ + GV L+FL+ FTG VD H
Sbjct: 259 VRLSADRSEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMH 318
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
+ +TN Y+ ++ V A IL PTS+ V LTL LH P+ + ++G +
Sbjct: 319 VDPE-KSTN----YSPNQMVKACILSTHPTSKVVRLTLRQAFLHPGGSPNQLSNDRIGAV 373
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
++S + + A+ +++ +K G + RI+ +
Sbjct: 374 VEESTVKAFYKQFGAVFQLDDGML---AFARPKHLSKTRKSFKPAAFKAGCKHKCRIIDY 430
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ + LK E + D+ G V++GKV+++ G V+ G+K L P H
Sbjct: 431 SLMDEMCIVSLKHQIIEARFLRYEDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMH 490
Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ + +P KK+ VG E+ RVL K++ +T KKTLV+SKL +LSSY +A LI
Sbjct: 491 LADVILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLVQSKLPVLSSYEDAEPGLI 550
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG++ + GC V+FYN V+G P++EL +P P ++H GQVVK ++ P
Sbjct: 551 THGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQE 610
Query: 649 RINLSFMMKPTRVSEDXXX----------XXXXXXXXXXXXXXXXXXXXXXIAK--GYSK 696
R+ LSF + V E I + G
Sbjct: 611 RLLLSFRLSSRTVPEGRSECIPKKKQQVKYQIGEMVDVEVLKKNENGLEVSILEDGGNVI 670
Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPS 754
+PT HL+D + ++ ++ ++ G +++ L ++ ++L K ++I++ Q Q+
Sbjct: 671 AWLPTVHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVR 730
Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
S I P ++ GYV ++ G FV F +TG AP+ D D + VGQ+V +
Sbjct: 731 SFSEIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIA 790
Query: 815 NILDVNSETGRITLSLKQSCCSSTDAS 841
++ ++ E R+ LSLK S CSS D++
Sbjct: 791 KVMSIDEEKQRVLLSLKVSECSSGDSA 817
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1935 | |||
| cd05708 | 77 | cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: | 1e-29 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 1e-27 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 5e-27 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 3e-25 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 8e-25 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 4e-24 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 4e-24 | |
| cd05694 | 74 | cd05694, S1_Rrp5_repeat_hs2_sc2, S1_Rrp5_repeat_hs | 2e-23 | |
| cd05698 | 70 | cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs | 3e-23 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 4e-22 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 8e-22 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 2e-21 | |
| cd05703 | 73 | cd05703, S1_Rrp5_repeat_hs12_sc9, S1_Rrp5_repeat_h | 2e-21 | |
| cd05695 | 66 | cd05695, S1_Rrp5_repeat_hs3, S1_Rrp5_repeat_hs3: R | 3e-21 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 2e-20 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 4e-18 | |
| PRK00087 | 647 | PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d | 5e-18 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 7e-18 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 8e-18 | |
| cd05702 | 70 | cd05702, S1_Rrp5_repeat_hs11_sc8, S1_Rrp5_repeat_h | 8e-18 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 7e-17 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 1e-16 | |
| cd05693 | 100 | cd05693, S1_Rrp5_repeat_hs1_sc1, S1_Rrp5_repeat_hs | 1e-16 | |
| pfam00575 | 74 | pfam00575, S1, S1 RNA binding domain | 2e-16 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 1e-15 | |
| cd05707 | 68 | cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: | 8e-15 | |
| cd05688 | 68 | cd05688, S1_RPS1_repeat_ec3, S1_RPS1_repeat_ec3: R | 1e-14 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 3e-14 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 4e-14 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 5e-14 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 1e-13 | |
| cd05692 | 69 | cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: R | 1e-13 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 1e-13 | |
| PRK11824 | 693 | PRK11824, PRK11824, polynucleotide phosphorylase/p | 3e-13 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 7e-13 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 8e-13 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 2e-12 | |
| PRK07899 | 486 | PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | 2e-12 | |
| COG1098 | 129 | COG1098, VacB, Predicted RNA binding protein (cont | 5e-12 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 6e-12 | |
| PRK08059 | 123 | PRK08059, PRK08059, general stress protein 13; Val | 6e-12 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 9e-12 | |
| cd05698 | 70 | cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs | 1e-11 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 1e-11 | |
| cd00164 | 65 | cd00164, S1_like, S1_like: Ribosomal protein S1-li | 1e-11 | |
| cd00164 | 65 | cd00164, S1_like, S1_like: Ribosomal protein S1-li | 1e-11 | |
| cd05684 | 79 | cd05684, S1_DHX8_helicase, S1_DHX8_helicase: The N | 2e-11 | |
| PRK07400 | 318 | PRK07400, PRK07400, 30S ribosomal protein S1; Revi | 3e-11 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 7e-11 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 8e-11 | |
| cd04471 | 83 | cd04471, S1_RNase_R, S1_RNase_R: RNase R C-termina | 9e-11 | |
| PRK00087 | 647 | PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d | 1e-10 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 2e-10 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 3e-10 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 4e-10 | |
| COG1093 | 269 | COG1093, SUI2, Translation initiation factor 2, al | 4e-10 | |
| cd04452 | 76 | cd04452, S1_IF2_alpha, S1_IF2_alpha: The alpha sub | 4e-10 | |
| PRK03987 | 262 | PRK03987, PRK03987, translation initiation factor | 4e-10 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 6e-10 | |
| COG1185 | 692 | COG1185, Pnp, Polyribonucleotide nucleotidyltransf | 6e-10 | |
| cd05690 | 69 | cd05690, S1_RPS1_repeat_ec5, S1_RPS1_repeat_ec5: R | 6e-10 | |
| cd05697 | 69 | cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: R | 7e-10 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 8e-10 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 1e-09 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 2e-09 | |
| COG2183 | 780 | COG2183, Tex, Transcriptional accessory protein [T | 2e-09 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 3e-09 | |
| cd05697 | 69 | cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: R | 3e-09 | |
| cd05685 | 68 | cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain | 3e-09 | |
| cd05708 | 77 | cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: | 5e-09 | |
| TIGR02063 | 709 | TIGR02063, RNase_R, ribonuclease R | 6e-09 | |
| TIGR03591 | 684 | TIGR03591, polynuc_phos, polyribonucleotide nucleo | 7e-09 | |
| pfam00575 | 74 | pfam00575, S1, S1 RNA binding domain | 9e-09 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 9e-09 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 9e-09 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 1e-08 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 2e-08 | |
| PRK05807 | 136 | PRK05807, PRK05807, hypothetical protein; Provisio | 2e-08 | |
| cd05698 | 70 | cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs | 3e-08 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 3e-08 | |
| cd05691 | 73 | cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: R | 3e-08 | |
| cd00164 | 65 | cd00164, S1_like, S1_like: Ribosomal protein S1-li | 4e-08 | |
| COG2183 | 780 | COG2183, Tex, Transcriptional accessory protein [T | 6e-08 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 8e-08 | |
| cd04472 | 68 | cd04472, S1_PNPase, S1_PNPase: Polynucleotide phos | 8e-08 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 1e-07 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 1e-07 | |
| cd05698 | 70 | cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs | 1e-07 | |
| PRK07252 | 120 | PRK07252, PRK07252, hypothetical protein; Provisio | 1e-07 | |
| PRK00087 | 647 | PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d | 2e-07 | |
| PRK07899 | 486 | PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | 2e-07 | |
| cd00164 | 65 | cd00164, S1_like, S1_like: Ribosomal protein S1-li | 2e-07 | |
| cd00164 | 65 | cd00164, S1_like, S1_like: Ribosomal protein S1-li | 2e-07 | |
| cd05696 | 71 | cd05696, S1_Rrp5_repeat_hs4, S1_Rrp5_repeat_hs4: R | 4e-07 | |
| cd05705 | 74 | cd05705, S1_Rrp5_repeat_hs14, S1_Rrp5_repeat_hs14: | 5e-07 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 6e-07 | |
| COG0557 | 706 | COG0557, VacB, Exoribonuclease R [Transcription] | 6e-07 | |
| PRK00087 | 647 | PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d | 7e-07 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 1e-06 | |
| cd05693 | 100 | cd05693, S1_Rrp5_repeat_hs1_sc1, S1_Rrp5_repeat_hs | 2e-06 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 3e-06 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 3e-06 | |
| cd05686 | 73 | cd05686, S1_pNO40, S1_pNO40: pNO40 , S1-like RNA-b | 5e-06 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 7e-06 | |
| COG5107 | 660 | COG5107, RNA14, Pre-mRNA 3'-end processing (cleava | 7e-06 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 8e-06 | |
| cd05689 | 72 | cd05689, S1_RPS1_repeat_ec4, S1_RPS1_repeat_ec4: R | 9e-06 | |
| PRK00087 | 647 | PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d | 1e-05 | |
| pfam00575 | 74 | pfam00575, S1, S1 RNA binding domain | 1e-05 | |
| PLN00207 | 891 | PLN00207, PLN00207, polyribonucleotide nucleotidyl | 1e-05 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 2e-05 | |
| pfam00575 | 74 | pfam00575, S1, S1 RNA binding domain | 3e-05 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 4e-05 | |
| cd05691 | 73 | cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: R | 4e-05 | |
| cd05703 | 73 | cd05703, S1_Rrp5_repeat_hs12_sc9, S1_Rrp5_repeat_h | 5e-05 | |
| cd05685 | 68 | cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain | 5e-05 | |
| pfam00575 | 74 | pfam00575, S1, S1 RNA binding domain | 7e-05 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 8e-05 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 8e-05 | |
| cd05706 | 73 | cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: | 8e-05 | |
| cd05789 | 86 | cd05789, S1_Rrp4, S1_Rrp4: Rrp4 S1-like RNA-bindin | 8e-05 | |
| cd05704 | 72 | cd05704, S1_Rrp5_repeat_hs13, S1_Rrp5_repeat_hs13: | 9e-05 | |
| cd05697 | 69 | cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: R | 1e-04 | |
| PRK11642 | 813 | PRK11642, PRK11642, exoribonuclease R; Provisional | 1e-04 | |
| COG1098 | 129 | COG1098, VacB, Predicted RNA binding protein (cont | 2e-04 | |
| cd05698 | 70 | cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs | 3e-04 | |
| cd05707 | 68 | cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: | 3e-04 | |
| PRK08582 | 139 | PRK08582, PRK08582, hypothetical protein; Provisio | 3e-04 | |
| cd05692 | 69 | cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: R | 5e-04 | |
| cd05707 | 68 | cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: | 6e-04 | |
| cd05707 | 68 | cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: | 6e-04 | |
| TIGR00358 | 654 | TIGR00358, 3_prime_RNase, VacB and RNase II family | 6e-04 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 7e-04 | |
| PRK07899 | 486 | PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | 7e-04 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 8e-04 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 8e-04 | |
| cd05702 | 70 | cd05702, S1_Rrp5_repeat_hs11_sc8, S1_Rrp5_repeat_h | 0.001 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 0.001 | |
| COG1185 | 692 | COG1185, Pnp, Polyribonucleotide nucleotidyltransf | 0.001 | |
| cd05697 | 69 | cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: R | 0.001 | |
| pfam05843 | 271 | pfam05843, Suf, Suppressor of forked protein (Suf) | 0.001 | |
| PRK04163 | 235 | PRK04163, PRK04163, exosome complex RNA-binding pr | 0.001 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 0.002 | |
| COG1098 | 129 | COG1098, VacB, Predicted RNA binding protein (cont | 0.002 | |
| cd05707 | 68 | cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: | 0.003 | |
| cd05706 | 73 | cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: | 0.003 | |
| cd05706 | 73 | cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: | 0.003 | |
| cd05706 | 73 | cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: | 0.003 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 0.004 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 0.004 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 0.004 |
| >gnl|CDD|240213 cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-29
Identities = 40/77 (51%), Positives = 59/77 (76%)
Query: 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
VG + G ++RVE YG+FI I+ TN+ GLCH SE+S++ V + ++R G+KV+ K+LK
Sbjct: 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLK 60
Query: 1527 VDKEKRRISLGMKSSYF 1543
+D EK+RISLG+K+SYF
Sbjct: 61 IDAEKKRISLGLKASYF 77
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 77 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-27
Identities = 94/396 (23%), Positives = 168/396 (42%), Gaps = 68/396 (17%)
Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR--- 1209
+ + + G V G V ++ + L+ I K++ I + EF
Sbjct: 11 ESDKSDEEFEPGDVVKGTVVSIEKDGVLVDIG--GKSEGVI--------PISEFSNEPVE 60
Query: 1210 --FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
+G V VL + + L L R + + + + ++ G+IV G+I
Sbjct: 61 DVVQVGDEVEVLVLRVEDGEGELVLSRRKAE-------RERAWEKLEEAFENGEIVEGKI 113
Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1327
+ + G GL V I + + + + ++ L G+ ++ K+
Sbjct: 114 TGKVKG--GLTVDIEG-VRAFLPGSLV-DVRPVRDLDPL------------IGKELEFKI 157
Query: 1328 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1387
LE+ + R V LS R+ L+ + E + L +V+G VK
Sbjct: 158 LELDKK-RNN--VVLSRRAVLE------EERSE-------QREELLNKLEVGEVVEGVVK 201
Query: 1388 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
N+T G F+ + +D + +S +S V+ P + +G V +V+S++ RV ++L
Sbjct: 202 NITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGDEVKVKVISLDEERGRVSLSL 260
Query: 1448 KTSDSRTASQSEINNLSN----LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1503
K Q E + VGD V G++ + YG F+ IE + GL HVSE+S
Sbjct: 261 K--------QLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEIEEG-VEGLVHVSEIS 311
Query: 1504 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539
+ + + G++V+VK+L +D E+RRISLG+K
Sbjct: 312 WTKKNVPSEVVKVGQEVEVKVLDIDPERRRISLGLK 347
|
Length = 541 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-27
Identities = 37/80 (46%), Positives = 45/80 (56%)
Query: 751 QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
LP++ S + P VVHGYV NI G FV FLG LTG AP+S D D S + GQ
Sbjct: 4 TLPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQ 63
Query: 811 SVRSNILDVNSETGRITLSL 830
SV + + V+ E R LSL
Sbjct: 64 SVTAKVTSVDEEKQRFLLSL 83
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-25
Identities = 109/474 (22%), Positives = 189/474 (39%), Gaps = 69/474 (14%)
Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKV 545
FE + + +PG VVKG V++++ G +V G + + P+ SEF +V
Sbjct: 9 FEESDKSDEEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPI---SEFSNEPVEDVVQV 65
Query: 546 GAELVFRVLGVKSKRITVT-HKKTLV--KSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
G E+ VL V+ + ++ ++ + ++ I G IT K G
Sbjct: 66 GDEVEVLVLRVEDGEGELVLSRRKAERERAWEKLEEAFENGE---IVEGKITGKVKGGLT 122
Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTR 660
V GV+ F P S + + P + + +G+ ++ +I+ + LS +++ R
Sbjct: 123 VDI-EGVRAFLPGSLVDVRPVRDLDPL--IGKELEFKILELDKKRNNVVLSRRAVLEEER 179
Query: 661 VSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 715
+ + + ++G +V GVV +T +V G G + ++ ++H
Sbjct: 180 SEQREELLNKLEVGEVVEGVVKNITDYG--AFVDIGGV-DGLLHISEISWKRVDH---PS 233
Query: 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNI 772
V+K G E +++ LD E + LS K ++ P V G V N+
Sbjct: 234 EVVKVGDEVKVKVISLDEERGRVSLSLK-----QLEEDPWEGIEKKYPVGDKVEGKVTNL 288
Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
+ G FV + G S+ ++ S+ VGQ V +LD++ E RI+L LKQ
Sbjct: 289 TDYGAFVEIEEGVEGLVHVSEISWTKKNVPSEVVKVGQEVEVKVLDIDPERRRISLGLKQ 348
Query: 833 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
L+E + KH +G V+EGKV DFG V
Sbjct: 349 ----------------LKENPWEEFADKHP-----------VGDVVEGKVKSITDFGAFV 381
Query: 893 SFEEHSDVYGFITHHQL-------AGATVESGSVIQAAILDVAKAERLVDLSLK 939
E D G + L + G ++A +L V K + + L +K
Sbjct: 382 ELEGGID--GLVHLSDLSWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIK 433
|
Length = 541 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 8e-25
Identities = 130/562 (23%), Positives = 221/562 (39%), Gaps = 69/562 (12%)
Query: 402 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS 461
+ GD+ VV +++ G+L+DI + + IS E +E + G
Sbjct: 16 DEEFEPGDVVK-GTVVSIEKD-GVLVDIG---GKSEGVIPIS---EFSNEPVEDVVQVGD 67
Query: 462 CVRVRILGFRHLEGLAT-GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG 520
V V +L EG KA + G +V+GK+ G V
Sbjct: 68 EVEVLVLRVEDGEGELVLSRRKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDI-E 126
Query: 521 GVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV--KSKRITVTHKKTLVKSKLA- 575
GV+A P + V+P + +G EL F++L + K + ++ + L + +
Sbjct: 127 GVRAFLPGSLVD----VRPVRDLDPLIGKELEFKILELDKKRNNVVLSRRAVLEEERSEQ 182
Query: 576 ---ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
+L+ + G + I +G FV GV G SE+ PS + V
Sbjct: 183 REELLNKLEVGE---VVEGVVKNITDYGAFVDI-GGVDGLLHISEISWKRVDHPSEVVKV 238
Query: 633 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVY 688
G VK +++S R++LS +K + ++ +G V G V +T V
Sbjct: 239 GDEVKVKVISLDEERGRVSLS--LKQLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVE 296
Query: 689 VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLIN 747
I +G G + ++ V V+K G E + ++L +D E + L K N
Sbjct: 297 -IEEGVE-GLVHVSEISW--TKKNVPSEVVKVGQEVEVKVLDIDPERRRISLGLKQLKEN 352
Query: 748 SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
++ VV G V +I + G FV G + G S + + ++ Y
Sbjct: 353 PWEEFADK---HPVGDVVEGKVKSITDFGAFVELEGGIDGLVHLSDLSWDRPGEEAEKYK 409
Query: 808 VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
G V + +L V+ E RI+L +KQ LEE + E +
Sbjct: 410 KGDEVEAKVLAVDKEKERISLGIKQ----------------LEE----------SPWE-E 442
Query: 868 WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV 927
+ E + GSV++GKV D G V V G I +L+ ++ G ++A ++ +
Sbjct: 443 FSEKYKKGSVVKGKVKSVKDKGAFVELGGG--VEGLIRLSELSRDVLKVGDEVEAVVVSI 500
Query: 928 AKAERLVDLSLKTVFIDRFREA 949
K R + LS+K + +EA
Sbjct: 501 DKKNRKILLSIKALERKEEKEA 522
|
Length = 541 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-24
Identities = 107/486 (22%), Positives = 195/486 (40%), Gaps = 80/486 (16%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
G +V+ + I+ + + G G I I+E +++ V ++G V ++
Sbjct: 21 PGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPVEDV------VQVGDEVEVLVL 74
Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL----LFEECDVSIGQRVTGYV---YKVD 1175
+ E + S + FE + ++TG V VD
Sbjct: 75 RVEDG---------EGELVLSRRKAERERAWEKLEEAFEN-GEIVEGKITGKVKGGLTVD 124
Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
E ++A F+ S + +++ IGK + +L ++K++ + L R
Sbjct: 125 IE--------GVRA--FLPGSLVDVRPVRDLDP--LIGKELEFKILELDKKRNNVVLSRR 172
Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
+ + + + ++ G++V G + I G V IG + G +H +E+
Sbjct: 173 AVLEEERSEQREELLNKLE----VGEVVEGVVKNITDY--GAFVDIG-GVDGLLHISEI- 224
Query: 1296 NICVSDPLSGYDEGQFD-PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
+ D P G VK KV+ + V LSL+ +
Sbjct: 225 -----------SWKRVDHPSEVVKVGDEVKVKVISLDE---ERGRVSLSLKQLEED---- 266
Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
P + +EK V+G V N+T G F+ + ++ V +S +S
Sbjct: 267 -----------PWEGIEKK--YPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWT 313
Query: 1415 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1474
P + +G+ V +VL ++P +R+ + LK + VGD+V G
Sbjct: 314 KKNVPSEVVKVGQEVEVKVLDIDPERRRISLGLK----QLKENPWEEFADKHPVGDVVEG 369
Query: 1475 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1534
++K + +G F+ +E + GL H+S+LS D Y+ G++V+ K+L VDKEK RI
Sbjct: 370 KVKSITDFGAFVELEG-GIDGLVHLSDLSWDRPGEEAEKYKKGDEVEAKVLAVDKEKERI 428
Query: 1535 SLGMKS 1540
SLG+K
Sbjct: 429 SLGIKQ 434
|
Length = 541 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-24
Identities = 81/351 (23%), Positives = 139/351 (39%), Gaps = 30/351 (8%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
++K G VVKG V + FGA V GGV L + MS + P + KVG E+ +V
Sbjct: 183 ENLKEGDVVKGVVKNITDFGAFVDL-GGVDGLLHITDMSWKRVKHPSEYVKVGQEVKVKV 241
Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
+ + RI+++ K+ AI + G +T + +G FV G++G
Sbjct: 242 IKFDKEKGRISLSLKQLGEDPWEAIEKKFPVGD---KITGRVTNLTDYGVFVEIEEGIEG 298
Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK-- 668
SE+ PS + G V+ I+ P RR++L E K
Sbjct: 299 LVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANPWEQFEEKHP 358
Query: 669 LGSLVSGVVDVVTPNAVVVY-------VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
+G V+G + +T V +I + +++V+
Sbjct: 359 VGDRVTGKIKKITDFGAFVELEGGIDGLIHLSDISWDKDGREADHLYKKGDEIEAVV--- 415
Query: 722 YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
L +D E + L K N ++ + + SVV G V I + G FV
Sbjct: 416 ------LAVDKEKKRISLGVKQLTENPWEKF----AAKYKVGSVVKGKVTEIKDFGAFVE 465
Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
G + G S+ + + D + VG V + ++D++ + +++LS+K
Sbjct: 466 LPGGVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKVSLSVK 516
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|240199 cd05694, S1_Rrp5_repeat_hs2_sc2, S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 2e-23
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 289
+ EGMVL+ V S+EDHGYIL G+P TGFLP+ + S + K G LL VV +
Sbjct: 2 LVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNFSKL--KVGQLLLCVVEKVKD 59
Query: 290 TRKVVYLSSDPDTVS 304
+VV LS+DP VS
Sbjct: 60 DGRVVSLSADPSKVS 74
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 74 |
| >gnl|CDD|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 3e-23
Identities = 31/69 (44%), Positives = 43/69 (62%)
Query: 587 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
L THG I K++ +GC V FYN V+GF P+SEL +P + VGQVVK +++S P
Sbjct: 2 LKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPE 61
Query: 647 SRRINLSFM 655
+R+ LS
Sbjct: 62 QQRLLLSCK 70
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-22
Identities = 97/426 (22%), Positives = 178/426 (41%), Gaps = 92/426 (21%)
Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKA 1215
+ +G+ V G V + + A + I + L I + +++ PSE+ +G
Sbjct: 189 KLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEV------VKVGDE 241
Query: 1216 VTGHVLSINKEKKLLRLVLRPFQ----DGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
V V+S+++E+ + L L+ + +GI K GD V G+++ +
Sbjct: 242 VKVKVISLDEERGRVSLSLKQLEEDPWEGIEKK------------YPVGDKVEGKVTNLT 289
Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
G V+I + G VH +E+ K S+ + GQ V+ KVL
Sbjct: 290 DY--GAFVEIEEGVEGLVHVSEISWTKKNVPSEVVK--------------VGQEVEVKVL 333
Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
+I R + L L+ + P + + +V+G VK+
Sbjct: 334 DIDPERR---RISLGLKQLKE---------------NPWEEFA--DKHPVGDVVEGKVKS 373
Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
+T G F+ L +D V LS+LS +++ G V +VL+V+ +R+ + +K
Sbjct: 374 ITDFGAFVELEGGIDGLVHLSDLSWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIK 433
Query: 1449 TSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1507
+S S + G +V G++K V+ G F+ + + GL +SELS D
Sbjct: 434 Q-----LEESPWEEFSEKYKKGSVVKGKVKSVKDKGAFVELGG-GVEGLIRLSELSRD-- 485
Query: 1508 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGS 1567
+ + G++V+ ++ +DK+ R+I L +K+ +E EA+E
Sbjct: 486 -----VLKVGDEVEAVVVSIDKKNRKILLSIKALE------------RKEEKEALESYNK 528
Query: 1568 YNRSSL 1573
+ SSL
Sbjct: 529 DDDSSL 534
|
Length = 541 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 8e-22
Identities = 100/386 (25%), Positives = 158/386 (40%), Gaps = 88/386 (22%)
Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ----DGISDKTVDISNDNMQT 1255
PSE+ ++G V VL +KEKK + L L+ + I K
Sbjct: 241 PSEV------VNVGDEVKVKVLKFDKEKKRVSLGLKQLGEDPWEAIEKK----------- 283
Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQF 1311
G V G+++ I G V++ + G VH +E+ KN S +S
Sbjct: 284 -YPVGSKVKGKVTNITDY--GAFVELEEGIEGLVHVSEMSWTKKNKHPSKVVS------- 333
Query: 1312 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS---SDLSTDVDTPGK 1368
GQ V+ VLEI R R SL G+ + + K
Sbjct: 334 -------VGQEVEVMVLEIDEEKR---------RISL-GLKQCKENPWEEFAE------K 370
Query: 1369 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGK 1427
+ +V+G VKN+T G F+ L +D V LS++S D E + + G
Sbjct: 371 Y-------PVGDVVEGKVKNITDFGAFVGLEGGIDGLVHLSDISWDKKGEEAVELYKKGD 423
Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFI 1486
V VL V+ +R+ + +K + + H G IV G + V+ G F+
Sbjct: 424 EVEAVVLKVDVEKERISLGIKQ-----LEEDPFEEFAKKHKKGSIVTGTVTEVKDKGAFV 478
Query: 1487 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1546
+E+ + GL SELS D V++ + + G++V+ K++ +D++ RRISL +K+
Sbjct: 479 ELED-GVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRISLSIKA------ 531
Query: 1547 ADNLQMSSEEESDEAIEEVGSYNRSS 1572
E E EAI E S + S
Sbjct: 532 ------LDEAEEKEAIAEYNSASDSK 551
|
Length = 565 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-21
Identities = 116/575 (20%), Positives = 212/575 (36%), Gaps = 105/575 (18%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
+ G + IEK G V +G P SE +P + VG V+ ++
Sbjct: 24 VVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPV---EDVVQVGDEVEVLVLRVEDGE 80
Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
+ LS + + L + G +V G + + V + +G + +P +
Sbjct: 81 GELVLSRRKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDI--EGV-RAFLPGSLV 137
Query: 705 -------ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDA 756
D L + +++ LD + +N++LS + L ++Q
Sbjct: 138 DVRPVRDLDPLIGKELEFKILE----------LDKKRNNVVLSRRAVLEEERSEQREELL 187
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
+ + VV G V NI + G FV +G + G S+ + S+ VG V+ +
Sbjct: 188 NKLEVGEVVEGVVKNITDYGAFVD-IGGVDGLLHISEISWKRVDHPSEVVKVGDEVKVKV 246
Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
+ ++ E GR++LSLKQ L E+ ++ +G
Sbjct: 247 ISLDEERGRVSLSLKQ---------------LEEDPWEGIEKKYP------------VGD 279
Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAK 929
+EGKV D+G V EE V G + T + V+ G ++ +LD+
Sbjct: 280 KVEGKVTNLTDYGAFVEIEE--GVEGLVHVSEISWTKKNVPSEVVKVGQEVEVKVLDIDP 337
Query: 930 AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 989
R + L LK + N + + V V+ + + +
Sbjct: 338 ERRRISLGLK--------QLKENPWEEFADKHPVGDV-------VEGKVKSITDFGAFVE 382
Query: 990 LPEYNHSIGYASVSDY--NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET 1047
L G +SD + +++ G V A V+A+ R+ L +K + E+
Sbjct: 383 LEG--GIDGLVHLSDLSWDRPGEEAEKYKKGDEVEAKVLAVDKEKE--RISLGIKQLEES 438
Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
+ Y GS+V+ ++ +K ++ G G G I ++E++ D
Sbjct: 439 PW-----EEFSEKYKKGSVVKGKVKSVKDKGAFVELGGGVEGLIRLSELSRDV------- 486
Query: 1108 FSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKP 1142
K+G V A +++ +K + K LSIK
Sbjct: 487 ---LKVGDEVEAVVVS-IDKKNRKIL----LSIKA 513
|
Length = 541 |
| >gnl|CDD|240208 cd05703, S1_Rrp5_repeat_hs12_sc9, S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-21
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
GQ VTG+V V E+ LTIS +K ++ +LD + + S L+ +++F IG+A+ V+ +
Sbjct: 1 GQEVTGFVNNVSKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGV 60
Query: 1224 NKEKKLLRLVLR 1235
+KE KLLRL R
Sbjct: 61 DKEHKLLRLSAR 72
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 73 |
| >gnl|CDD|240200 cd05695, S1_Rrp5_repeat_hs3, S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 3e-21
Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
GM+V+ RV+ +L NG++L FL+ FTGTVD HL + K+ Y + +KV ARIL+VD
Sbjct: 1 GMLVNARVKKVLSNGLILDFLSSFTGTVDFLHLDPEKSS---KSTYKEGQKVRARILYVD 57
Query: 382 PTSRAVGLT 390
P+++ VGL+
Sbjct: 58 PSTKVVGLS 66
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 66 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 2e-20
Identities = 94/413 (22%), Positives = 185/413 (44%), Gaps = 66/413 (15%)
Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL-----QEFQRRFHIGK 1214
+V +G VTG V KV+++ + I + ++ SEL ++ +G
Sbjct: 14 EVEVGDVVTGEVLKVEDKQVFVNIEGY------KVEGVIPISELSNDHIEDINDVVKVGD 67
Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI--SNDNMQTFIHEGDIVGGRISKILS 1272
+ +VL + + L L S + ++ + D ++ EG++V ++++++
Sbjct: 68 ELEVYVLKVEDGEGNLLL---------SKRRLEAEKAWDKLEEKFEEGEVVEVKVTEVVK 118
Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
G GLVV + + G + + + V D S + G+ ++ K++E+
Sbjct: 119 G--GLVVDVE-GVRGFIPASLISTRFVED------------FSDFK-GKTLEVKIIELDP 162
Query: 1333 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1392
V LS R+ ++ + K E + L +V+G V +T
Sbjct: 163 EKN---RVILSRRAVVEEERAA-------------KKEELLSSLKEGDVVEGTVARLTDF 206
Query: 1393 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
G F+ + +D V +S LS VE P + +G+ V +VLS++ ++R+ ++LK D+
Sbjct: 207 GAFVDIG-GVDGLVHISELSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLSLK--DT 263
Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1512
+ L GD++ G +KR+ +G F+ + + GL H+S++S H+
Sbjct: 264 LPGPWEGV--EEKLPEGDVIEGTVKRLTDFGAFVEVLP-GVEGLVHISQISHKHIATPSE 320
Query: 1513 IYRAGEKVKVKILKVDKEKRRISLGMK------SSYFKNDADNLQMSSEEESD 1559
+ G++VKVK+L+V++E++RISL +K + + Q EE
Sbjct: 321 VLEEGQEVKVKVLEVNEEEKRISLSIKALEEAPAEEEDRREEYRQYELPEEET 373
|
Length = 390 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 4e-18
Identities = 112/478 (23%), Positives = 176/478 (36%), Gaps = 93/478 (19%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
+ +PG +VKG V+A++ V + P EF +VG E+ +
Sbjct: 14 EETRPGSIVKGTVVAINKDTVFVDVGLKSEGRIP---KEEFLDAPLE--IQVGDEVEVYL 68
Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
RV + + K + + + +Y E + I G I K G V NGV+
Sbjct: 69 DRVEDRFGETVLSREKAQRHELWIKLEKAYEEGS---IVEGKIVGKVKGGFIVDL-NGVE 124
Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS------SIPASRRINLSFMMKPTRVSED 664
F P S++ + P + S +G+ +K +I+ +I SRR L R
Sbjct: 125 AFLPGSQVDVKPIKDLDS--LIGKTLKFKIIKLDQKRNNIVVSRRAYLEEERSQAREELL 182
Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--KSVIKPG- 721
+ +K G +V GVV +T +V G D L H T M K V P
Sbjct: 183 ENLKEGDVVKGVVKNITDFGA--FVDLGGV-----------DGLLHITDMSWKRVKHPSE 229
Query: 722 -YEFDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVC 770
+ Q ++ D E + LS K QL D + G V
Sbjct: 230 YVKVGQEVKVKVIKFDKEKGRISLSLK--------QLGEDPWEAIEKKFPVGDKITGRVT 281
Query: 771 NIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
N+ + G FV + G S+ + + + SK G V ILD++ E R++L
Sbjct: 282 NLTDYGVFVEIEEGIEGLVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPERRRLSLG 341
Query: 830 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
LKQ + + E+ KH +G + GK+ + DFG
Sbjct: 342 LKQ----------CKANPW--EQFE----EKHP-----------VGDRVTGKIKKITDFG 374
Query: 890 VVVSFEEHSDVYGFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLK 939
V E D G I + A + G I+A +L V K ++ + L +K
Sbjct: 375 AFVELEGGID--GLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISLGVK 430
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 5e-18
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 12/172 (6%)
Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
E L +V+G VK +T G F+ + +D + +S +S G VE P +G +
Sbjct: 470 ETWNSLEEGDVVEGEVKRLTDFGAFVDIG-GVDGLLHVSEISWGRVEKPSDVLKVGDEIK 528
Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFIT 1487
+L ++ +K++ ++LK N VG IV+G++ R+ +G F+
Sbjct: 529 VYILDIDKENKKLSLSLK-------KLLPDPWENVEEKYPVGSIVLGKVVRIAPFGAFVE 581
Query: 1488 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539
+E + GL H+S++S +D E + GE+VK KIL+VD E++RI L +K
Sbjct: 582 LE-PGVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIK 632
|
Length = 647 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 7e-18
Identities = 83/386 (21%), Positives = 158/386 (40%), Gaps = 61/386 (15%)
Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAV 1216
+ G V G V + ++ + L I D ++ PSE + G+ V
Sbjct: 185 LKEGDVVKGVVKNIT-DFGAFVDLGGVDGLLHITDMSWKRVKHPSEYVKV------GQEV 237
Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
V+ +KEK + L L+ D I GD + GR++ + G
Sbjct: 238 KVKVIKFDKEKGRISLSLKQLG---EDPWEAIEKK-----FPVGDKITGRVTNLTDY--G 287
Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
+ V+I + G VH +E+ + + P +G V+ +L+I R
Sbjct: 288 VFVEIEEGIEGLVHVSEMS----------WVKKNSHPSKVVKKGDEVEVMILDIDPERR- 336
Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNVTSKGCF 1395
+ L L+ E+ E+ P V G +K +T G F
Sbjct: 337 --RLSLGLKQ------------------CKANPWEQFEEKHPVGDRVTGKIKKITDFGAF 376
Query: 1396 IMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
+ L +D + LS++S D + + G + VL+V+ KR+ + +K
Sbjct: 377 VELEGGIDGLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISLGVKQ----- 431
Query: 1455 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1513
+++ + + VG +V G++ ++ +G F+ + + GL SELSE+ ++
Sbjct: 432 LTENPWEKFAAKYKVGSVVKGKVTEIKDFGAFVELPG-GVEGLIRNSELSENRDEDKTDE 490
Query: 1514 YRAGEKVKVKILKVDKEKRRISLGMK 1539
+ G++V+ K++ +DK+ R++SL +K
Sbjct: 491 IKVGDEVEAKVVDIDKKNRKVSLSVK 516
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 8e-18
Identities = 69/286 (24%), Positives = 119/286 (41%), Gaps = 42/286 (14%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
GD+V G + I G++V IG G + +E N V D + DE
Sbjct: 19 FEPGDVVKGTVVSIEKD--GVLVDIGGKSEGVIPISEFSNEPVEDVVQVGDE-------- 68
Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
VE+ + DG S + + EK+E+
Sbjct: 69 -----------------------VEVLVLRVEDGEGELVLSRRKAERERA---WEKLEEA 102
Query: 1377 SPNM-IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
N IV+G + KG + + A + S + V + IGK + ++L
Sbjct: 103 FENGEIVEGKITGKV-KGGLTVDIEGVRAFLPGSLVDVRPVRDLDPL--IGKELEFKILE 159
Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1495
++ V ++ + S+ L+ L VG++V G +K + YG F+ I + G
Sbjct: 160 LDKKRNNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIGGVD--G 217
Query: 1496 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541
L H+SE+S VD+ + + G++VKVK++ +D+E+ R+SL +K
Sbjct: 218 LLHISEISWKRVDHPSEVVKVGDEVKVKVISLDEERGRVSLSLKQL 263
|
Length = 541 |
| >gnl|CDD|240207 cd05702, S1_Rrp5_repeat_hs11_sc8, S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 8e-18
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G LV+A++ +KP +L ++ HGRIH++EV D+ + +N S FKIGQ + AR+I
Sbjct: 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEWPD-GKNPLSKFKIGQKIKARVIG 59
Query: 1124 KSNKPDMKK 1132
D K
Sbjct: 60 ---GHDAKT 65
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 7e-17
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1527
VGD+V G + + G F+ + N + GL +SELS+ V + E + + G++VKVK+L V
Sbjct: 2 VGDVVEGTVTEITPGGAFVDLGN-GVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSV 60
Query: 1528 DKEKRRISLGMK 1539
D+EK RI L +K
Sbjct: 61 DEEKGRIILSLK 72
|
Length = 72 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 1e-16
Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
E +E+L +V+G VKN+T G F+ L +D + ++++S V+ P + +G+ V
Sbjct: 180 ELLENLKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKRVKHPSEYVKVGQEVK 238
Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
+V+ + R+ ++LK I VGD + G++ + YG+F+ IE
Sbjct: 239 VKVIKFDKEKGRISLSLKQLGED--PWEAIEK--KFPVGDKITGRVTNLTDYGVFVEIEE 294
Query: 1491 TNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539
+ GL HVSE+S + + + G++V+V IL +D E+RR+SLG+K
Sbjct: 295 -GIEGLVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPERRRLSLGLK 343
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|240198 cd05693, S1_Rrp5_repeat_hs1_sc1, S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-16
Identities = 40/101 (39%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI------LDNEIEA----NED 180
+S GM + G V E+ + DLVI LP GL G + D LD E E E
Sbjct: 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEEL 60
Query: 181 NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
L +F VGQLV C V+ LD K GK++I LSL L+
Sbjct: 61 PDLEDLFSVGQLVRCKVVSLDKSKS--GKKRIELSLEPELV 99
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 100 |
| >gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 2e-16
Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1524
GD+V G + RV G F+ + N + G +SE+S+D V++ + + + G++V+VK+
Sbjct: 1 KPEEGDVVKGTVTRVTKGGAFVDLGN-GVEGFIPISEISDDRVEDPDEVLKVGDEVEVKV 59
Query: 1525 LKVDKEKRRISLGMK 1539
LKVDKE+ RI L ++
Sbjct: 60 LKVDKERGRIILSIR 74
|
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Length = 74 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 1e-15
Identities = 79/302 (26%), Positives = 132/302 (43%), Gaps = 75/302 (24%)
Query: 1257 IHEGDIVGGRISKI--------LSGVGGLVVQIGPHL----YGRV-HFTELKNICVSDPL 1303
+ EG +V G + I L GV GL+ H+ + RV H +E+
Sbjct: 199 LEEGQVVEGVVKNITDYGAFVDLGGVDGLL-----HITDISWKRVNHPSEV--------- 244
Query: 1304 SGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1363
+ G VK KVL+ + V L L+ L D
Sbjct: 245 -------------VNVGDEVKVKVLKFDK---EKKRVSLGLKQ------------LGED- 275
Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKE 1422
P + +E + V+G V N+T G F+ L ++ V +S +S + P K
Sbjct: 276 --PWEAIE--KKYPVGSKVKGKVTNITDYGAFVELEEGIEGLVHVSEMSWTKKNKHPSKV 331
Query: 1423 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN---NLSNLH-VGDIVIGQIKR 1478
+G+ V VL ++ +R+ + LK Q + N + + VGD+V G++K
Sbjct: 332 VSVGQEVEVMVLEIDEEKRRISLGLK--------QCKENPWEEFAEKYPVGDVVEGKVKN 383
Query: 1479 VESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537
+ +G F+ +E + GL H+S++S + + +Y+ G++V+ +LKVD EK RISLG
Sbjct: 384 ITDFGAFVGLEG-GIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERISLG 442
Query: 1538 MK 1539
+K
Sbjct: 443 IK 444
|
Length = 565 |
| >gnl|CDD|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 8e-15
Identities = 28/68 (41%), Positives = 50/68 (73%)
Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
+V+G+VKN+ + G F+ L R +DA+V +S LSD Y++ +K F +G+LV G+++S++P
Sbjct: 1 GDVVRGFVKNIANNGVFVTLGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDP 60
Query: 1439 LSKRVEVT 1446
+ R+E+T
Sbjct: 61 DNGRIEMT 68
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 68 |
| >gnl|CDD|240193 cd05688, S1_RPS1_repeat_ec3, S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-14
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1527
GD+V G +K + +G F+ + + GL H+S++S V + + G++V+VK+LK+
Sbjct: 1 EGDVVEGTVKSITDFGAFVDLGGVD--GLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKI 58
Query: 1528 DKEKRRISLG 1537
DKE++RISLG
Sbjct: 59 DKERKRISLG 68
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 68 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 3e-14
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1522
L NL G +V G +K + YG F+ + + GL H++++S V++ + G++VKV
Sbjct: 196 LENLEEGQVVEGVVKNITDYGAFVDLGG--VDGLLHITDISWKRVNHPSEVVNVGDEVKV 253
Query: 1523 KILKVDKEKRRISLGMK 1539
K+LK DKEK+R+SLG+K
Sbjct: 254 KVLKFDKEKKRVSLGLK 270
|
Length = 565 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 4e-14
Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 11/170 (6%)
Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
+E+L +V+G VKN+T G F+ L +D + ++++S V P + +G V +
Sbjct: 196 LENLEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKRVNHPSEVVNVGDEVKVK 254
Query: 1433 VLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
VL + KRV + LK D I VG V G++ + YG F+ +E
Sbjct: 255 VLKFDKEKKRVSLGLKQLGEDP----WEAIE--KKYPVGSKVKGKVTNITDYGAFVELEE 308
Query: 1491 TNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539
+ GL HVSE+S + + G++V+V +L++D+EKRRISLG+K
Sbjct: 309 -GIEGLVHVSEMSWTKKNKHPSKVVSVGQEVEVMVLEIDEEKRRISLGLK 357
|
Length = 565 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 5e-14
Identities = 133/574 (23%), Positives = 210/574 (36%), Gaps = 88/574 (15%)
Query: 393 PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
LL + G I + VV +++ + +D+ + + +EE
Sbjct: 4 AQLLEESLKTEETRPGSIV-KGTVVAINKDT-VFVDV--------GLKSEGRIPKEEFLD 53
Query: 453 LEKKYKEGSCVRVRILGFRHLEGLAT-GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
+ + G V V + G KA E + + G +V+GK++
Sbjct: 54 APLEIQVGDEVEVYLDRVEDRFGETVLSREKAQRHELWIKLEKAYEEGSIVEGKIVGKVK 113
Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGVKSKR--ITVTHKK 567
G IV GV+A P + VKP K +G L F+++ + KR I V+ +
Sbjct: 114 GGFIVDL-NGVEAFLPGSQVD----VKPIKDLDSLIGKTLKFKIIKLDQKRNNIVVSRRA 168
Query: 568 TL---VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 624
L L + D + G + I G FV GV G +++
Sbjct: 169 YLEEERSQAREELLENLKEGDVV--KGVVKNITDFGAFVDL-GGVDGLLHITDMSWKRVK 225
Query: 625 EPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVT 681
PS VGQ VK +++ RI+LS P E +G ++G V +T
Sbjct: 226 HPSEYVKVGQEVKVKVIKFDKEKGRISLSLKQLGEDPWEAIEKKF-PVGDKITGRVTNLT 284
Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNES 734
V V I +G E L H+ + +K P G E + +L +D E
Sbjct: 285 DYGVFVE-IEEG-------IEGLV-HVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPER 335
Query: 735 SNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
L L K N +Q HP V G + I + G FV G + G S
Sbjct: 336 RRLSLGLKQCKANPWEQFEEK----HPVGDRVTGKIKKITDFGAFVELEGGIDGLIHLSD 391
Query: 794 AV-DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 852
D + Y G + + +L V+ E RI+L +KQ + +
Sbjct: 392 ISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENPWE------------- 438
Query: 853 IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA 912
K+ + +GSV++GKV E DFG V V G I + +L+
Sbjct: 439 --------------KFAAKYKVGSVVKGKVTEIKDFGAFVELPG--GVEGLIRNSELSEN 482
Query: 913 TVES-------GSVIQAAILDVAKAERLVDLSLK 939
E G ++A ++D+ K R V LS+K
Sbjct: 483 RDEDKTDEIKVGDEVEAKVVDIDKKNRKVSLSVK 516
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-13
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
G DL P M+V GYV+N+T G F+ L S +SD +V P F G
Sbjct: 3 GTLPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKG 62
Query: 1427 KLVAGRVLSVEPLSKRVEVTL 1447
+ V +V SV+ +R ++L
Sbjct: 63 QSVTAKVTSVDEEKQRFLLSL 83
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|240197 cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-13
Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1528
G +V G + R++ +G F+ + + GL H+S+++ V +++ + + G+KVKVK+L +D
Sbjct: 1 GSVVEGTVTRLKPFGAFVELGG-GISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSID 59
Query: 1529 KEKRRISLGMK 1539
RISL +K
Sbjct: 60 ARG-RISLSIK 69
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 69 |
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-13
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 8/171 (4%)
Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
+E + +V+G V + G F+ L+ ++ V +S LS V+ ++ +G V +
Sbjct: 197 METVKEGDVVEGTVTRLAPFGAFVELAPGVEGMVHISELSWSRVQKADEAVSVGDTVRVK 256
Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIENT 1491
VL +E K + + S + A + + + L GD V G++ R+ +G F+ I
Sbjct: 257 VLGIERAKKGKGLRISLS-IKQAGGDPWDTVGDRLKAGDKVTGKVVRLAPFGAFVEIL-P 314
Query: 1492 NLVGLCHVSELSEDHVDNI---ETIYRAGEKVKVKILKVDKEKRRISLGMK 1539
+ GL HVSE+S + E + G+ V VKI +D KRRISL ++
Sbjct: 315 GIEGLVHVSEMS--WTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLSLR 363
|
Length = 491 |
| >gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (186), Expect = 3e-13
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 1460 INNLSN-LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1518
I ++ VG+I G++ R+ +G F+ I GL H+SE++++ V+ +E + + G+
Sbjct: 612 IEGITAEPEVGEIYEGKVVRIVDFGAFVEILP-GKDGLVHISEIADERVEKVEDVLKEGD 670
Query: 1519 KVKVKILKVDKEKRRISLGMK 1539
+VKVK+L++DK + RI L K
Sbjct: 671 EVKVKVLEIDK-RGRIRLSRK 690
|
Length = 693 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 7e-13
Identities = 115/584 (19%), Positives = 222/584 (38%), Gaps = 103/584 (17%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL----AGATVESGSVIQAAILDVAKA 930
G V++G V GV+V S+ G I + V+ G ++ +L V
Sbjct: 22 GDVVKGTVVSIEKDGVLVDIGGKSE--GVIPISEFSNEPVEDVVQVGDEVEVLVLRVEDG 79
Query: 931 ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA-IVEIVKENYLVLS 989
E + LS R +A +K + + + V I VK V
Sbjct: 80 EGELVLS---------RRKAERERAWEKLEEAFENG-----EIVEGKITGKVKGGLTV-- 123
Query: 990 LPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 1049
+ + S + + L G+ + ++ L ++L +A+ E E
Sbjct: 124 --DIEGVRAFLPGSLVDVRPVRDLDPLIGKELEFKILEL--DKKRNNVVLSRRAVLE-EE 178
Query: 1050 SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
S +R + + +VG +V+ + I + G G G +HI+E++ + V++
Sbjct: 179 RSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKR---VDHPSE 234
Query: 1110 NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSM-LTVSEIGSKLLFEECDVSIGQRVT 1168
K+G V ++I+ D ++ + LS+K I K +G +V
Sbjct: 235 VVKVGDEVKVKVISL----DEERGRV-SLSLKQLEEDPWEGIEKKYP-------VGDKVE 282
Query: 1169 GYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGHVLSIN 1224
G V + + A + I ++ + + + ++ PSE+ +G+ V VL I+
Sbjct: 283 GKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKNVPSEV------VKVGQEVEVKVLDID 336
Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
E++ + L L+ + + + GD+V G++ I G V++
Sbjct: 337 PERRRISLGLK--------QLKENPWEEFADKHPVGDVVEGKVKSITDF--GAFVELEGG 386
Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
+ G VH +SD LS + + Y +G V+ KVL + + + L +
Sbjct: 387 IDGLVH--------LSD-LS--WDRPGEEAEKYKKGDEVEAKVLAVDKEKE---RISLGI 432
Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
+ L E E +V+G VK+V KG F+ L ++
Sbjct: 433 K------------QLEESPWE-----EFSEKYKKGSVVKGKVKSVKDKGAFVELGGGVEG 475
Query: 1405 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
+ LS LS +G V V+S++ ++++ +++K
Sbjct: 476 LIRLSELSR-------DVLKVGDEVEAVVVSIDKKNRKILLSIK 512
|
Length = 541 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 8e-13
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF----EIVKPGKKFKVGAELVFR 552
G VV+GKV + FGA V GG+ L H+S+ + + + +K G E+
Sbjct: 372 PVGDVVEGKVKNITDFGAFVGLEGGIDGLV---HLSDISWDKKGEEAVELYKKGDEVEAV 428
Query: 553 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
VL V + +RI++ K+ + + + I G +T+++ G FV +GV+
Sbjct: 429 VLKVDVEKERISLGIKQLEEDPFEEFAKKHKKGS---IVTGTVTEVKDKGAFVELEDGVE 485
Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
G SEL D + + + VG V+ ++++ +RRI+LS
Sbjct: 486 GLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRISLS 528
|
Length = 565 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-12
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
+ G VV+G V + GA V GV+ L P+ +S+ + P + KVG E+ +VL V
Sbjct: 1 EVGDVVEGTVTEITPGGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSV 60
Query: 557 --KSKRITVTHK 566
+ RI ++ K
Sbjct: 61 DEEKGRIILSLK 72
|
Length = 72 |
| >gnl|CDD|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 52/161 (32%), Positives = 94/161 (58%), Gaps = 10/161 (6%)
Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
+ +G V ++ + G F+ L +D V +S LS +++ P + +G+ V VL V+
Sbjct: 211 VRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDR 269
Query: 1441 KRVEVTLKTSDSRTASQSE-INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1498
+RV ++LK A+Q + + H +G IV G++ ++ +G F+ +E + GL H
Sbjct: 270 ERVSLSLK------ATQEDPWQQFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322
Query: 1499 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539
+SEL+E HV+ E + + G++V VK++ +D E+RRISL +K
Sbjct: 323 ISELAERHVEVPEQVVQVGDEVFVKVIDIDLERRRISLSLK 363
|
Length = 486 |
| >gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-12
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1523
++ VG + G+I + YG F+ +E GL H+SE+++ V +I + G++VKVK
Sbjct: 1 MSMKVGSKLKGKITGITPYGAFVELEGGK-TGLVHISEIADGFVKDIHDHLKVGQEVKVK 59
Query: 1524 ILKVDKEKRRISLGMKS 1540
+L +D E +ISL ++
Sbjct: 60 VLDID-ENGKISLSIRK 75
|
Length = 129 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 6e-12
Identities = 76/366 (20%), Positives = 147/366 (40%), Gaps = 59/366 (16%)
Query: 315 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD-IFHLQNTFPTTNWKND------Y 367
++ L G +V V++I + G + G VD + H+ + +WK
Sbjct: 181 LLENLKEGDVVKGVVKNITDFGAFVDL-----GGVDGLLHITDM----SWKRVKHPSEYV 231
Query: 368 NQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDIYDQSKVVR 418
++V +++ D + L+L +P+ + + P +V ++ D V
Sbjct: 232 KVGQEVKVKVIKFDKEKGRISLSLKQLGEDPWEAIEKKFPVGDKITGRVTNLTDYGVFVE 291
Query: 419 VDRGL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
++ G+ GL+ + V D E + ++ + + R+ LG +
Sbjct: 292 IEEGIEGLVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPERR-----RLS-LGLKQC 345
Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
KA+ +E H G V GK+ + FGA V+ GG+ L H+S+
Sbjct: 346 --------KANPWEQFEEKH---PVGDRVTGKIKKITDFGAFVELEGGIDGLI---HLSD 391
Query: 534 FEIVKPGK----KFKVGAEL--VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
K G+ +K G E+ V + + KRI++ K+ + Y +
Sbjct: 392 ISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENPWEKFAAKYKVGS--- 448
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
+ G +T+I+ G FV GV+G SEL + + + VG V+ +++ +
Sbjct: 449 VVKGKVTEIKDFGAFVELPGGVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKN 508
Query: 648 RRINLS 653
R+++LS
Sbjct: 509 RKVSLS 514
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|181215 PRK08059, PRK08059, general stress protein 13; Validated | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 6e-12
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1522
+S VG +V G++ ++ YG F+ ++ GL H+SE++ V +I G++VKV
Sbjct: 2 MSQYEVGSVVTGKVTGIQPYGAFVALDEETQ-GLVHISEITHGFVKDIHDFLSVGDEVKV 60
Query: 1523 KILKVDKEKRRISLGMK 1539
K+L VD+EK +ISL ++
Sbjct: 61 KVLSVDEEKGKISLSIR 77
|
Length = 123 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 9e-12
Identities = 109/581 (18%), Positives = 204/581 (35%), Gaps = 100/581 (17%)
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
P VV G V +I + G V G+ G P S+ + D+ + VG V +
Sbjct: 17 EEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPVEDVVQ---VGDEVEVLV 73
Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
L V G + LS ++ A + LEE G
Sbjct: 74 LRVEDGEGELVLSRRK-------AERERAWEKLEEAFE-------------------NGE 107
Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFI-----THHQLAGATVESGSVIQAAILDVAKAE 931
++EGK+ G+ V E V F+ + G ++ IL++ K
Sbjct: 108 IVEGKITGKVKGGLTVDIEG---VRAFLPGSLVDVRPVRDLDPLIGKELEFKILELDKKR 164
Query: 932 RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 991
V LS + V + ++ +++ E L V + V +V+ + + + +
Sbjct: 165 NNVVLSRRAVL-----------EEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG 213
Query: 992 EYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 1051
+ + + +S P + G V V + GR+ L LK
Sbjct: 214 GVDGLLHISEISWKRV-DHPSEVVKVGDEV--KVKVISLDEERGRVSLSLKQ-----LEE 265
Query: 1052 SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 1111
+ Y VG V+ ++T + ++ G G +H++E++ K NV +
Sbjct: 266 DPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKNVPSEVV--- 322
Query: 1112 KIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
K+GQ V +++ + + S L +K + F + +G V G V
Sbjct: 323 KVGQEVEVKVL-DIDPERRRIS----LGLK-----QLKENPWEEFAD-KHPVGDVVEGKV 371
Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
+ + A + + + + S E ++ G V VL+++KEK+ +
Sbjct: 372 KSITDFGAFVELEGGIDG--LVHLSDLSWDRPGEEAEKYKKGDEVEAKVLAVDKEKERIS 429
Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
L GI + + + +G +V G++ + G V++G + G +
Sbjct: 430 L-------GIKQLEESPWEEFSEKYK-KGSVVKGKVKSVKDK--GAFVELGGGVEGLIRL 479
Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
+EL D L G V+ V+ I +
Sbjct: 480 SEL----SRDVLK--------------VGDEVEAVVVSIDK 502
|
Length = 541 |
| >gnl|CDD|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-11
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
HG + + GC V F + GF P+S+ + D + + VGQ V+ +L + E R
Sbjct: 5 HGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQR 64
Query: 826 ITLSLK 831
+ LS K
Sbjct: 65 LLLSCK 70
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 1e-11
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 439 YVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHS 494
V +SD++ +++ + + YK+G V +L E ++ GI L+ FE
Sbjct: 400 LVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERISLGIKQLEEDPFEEFA---K 456
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
K G +V G V V GA V+ GV+ L +S + + KVG E+ +V+
Sbjct: 457 KHKKGSIVTGTVTEVKDKGAFVELEDGVEGLIRASELSRDRVEDATEVLKVGDEVEAKVI 516
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATD 585
+ K++RI+++ K + ++ Y A+D
Sbjct: 517 NIDRKNRRISLSIKALDEAEEKEAIAEYNSASD 549
|
Length = 565 |
| >gnl|CDD|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 26/66 (39%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 1472 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1531
V G++ + +G+F+ +E + GL H+SELS+ V + +++ G++V+VK+L+VD EK
Sbjct: 1 VTGKVVSITKFGVFVELE-DGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEK 59
Query: 1532 RRISLG 1537
RISL
Sbjct: 60 GRISLS 65
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. Length = 65 |
| >gnl|CDD|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
V G V ++T G F+ L ++ V +S LSD +V+ P + F +G V +VL V+P
Sbjct: 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKG 60
Query: 1442 RVEVT 1446
R+ ++
Sbjct: 61 RISLS 65
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. Length = 65 |
| >gnl|CDD|240189 cd05684, S1_DHX8_helicase, S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-11
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 1469 GDIVIGQIKRVESYGLFITIENT--NLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKIL 1525
G I G++ + +G F+ +E GL H+S+LS + V N + + G+KVKVK++
Sbjct: 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVI 60
Query: 1526 KVDKEKRRISLGMK 1539
+ K ISL MK
Sbjct: 61 SIQNGK--ISLSMK 72
|
The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae. Length = 79 |
| >gnl|CDD|180960 PRK07400, PRK07400, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 27/77 (35%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1522
++ L VG++V+G ++ ++ YG FI I + GL H+SE+S +H++ +++ +++KV
Sbjct: 191 MNRLEVGEVVVGTVRGIKPYGAFIDIGGVS--GLLHISEISHEHIETPHSVFNVNDEMKV 248
Query: 1523 KILKVDKEKRRISLGMK 1539
I+ +D E+ RISL K
Sbjct: 249 MIIDLDAERGRISLSTK 265
|
Length = 318 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 7e-11
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
+V+G V +T G F+ L ++ + +S LSD V+ PE+ +G V +VLSV+
Sbjct: 2 VGDVVEGTVTEITPGGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVD 61
Query: 1438 PLSKRVEVTLK 1448
R+ ++LK
Sbjct: 62 EEKGRIILSLK 72
|
Length = 72 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 8e-11
Identities = 26/71 (36%), Positives = 33/71 (46%)
Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
VV G V I G FV + G P S+ D + D + VG V+ +L V+
Sbjct: 2 VGDVVEGTVTEITPGGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVD 61
Query: 821 SETGRITLSLK 831
E GRI LSLK
Sbjct: 62 EEKGRIILSLK 72
|
Length = 72 |
| >gnl|CDD|239917 cd04471, S1_RNase_R, S1_RNase_R: RNase R C-terminal S1 domain | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 9e-11
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 11/80 (13%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE-----------TIYRA 1516
VG+ G I V S+GLF+ ++N + GL HVS L +D+ + E ++R
Sbjct: 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRL 60
Query: 1517 GEKVKVKILKVDKEKRRISL 1536
G+KVKV++++VD ++R+I
Sbjct: 61 GDKVKVRVVRVDLDRRKIDF 80
|
RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA. Length = 83 |
| >gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-10
Identities = 80/361 (22%), Positives = 140/361 (38%), Gaps = 49/361 (13%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
++ G +VKG V++V+ V + + PL ++ EI + KVG E+ +VL
Sbjct: 299 QIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDEISSLKESVKVGDEIEVKVL 358
Query: 555 GVKSKRITVTHKKTLVKSKLA---ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
++ + V K + A + ++ G + ++ K G V Y GV+
Sbjct: 359 KLEDEDGYVVLSKKEADREKAWKELEEAFENGE---PVKGKVKEVVKGGLLVD-YGGVRA 414
Query: 612 FAPRSELGLDPGCEPSSMYHV-------GQVVKCRIMS-------SIPASRRINLSFMMK 657
F P S + +V GQ ++ +I+ + SR+ L +
Sbjct: 415 FLPASH---------VELGYVEDLSEYKGQELEVKIIEFNRKRRKKVVLSRKAILEEEKE 465
Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKS 716
+ + ++ G +V G V +T V + G G + ++ +E
Sbjct: 466 KKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI---GGVDGLLHVSEISWGRVEKP---SD 519
Query: 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD----ASHIHPNSVVHGYVCN 771
V+K G E +L +D E+ L LS K + LP S+V G V
Sbjct: 520 VLKVGDEIKVYILDIDKENKKLSLSLK-------KLLPDPWENVEEKYPVGSIVLGKVVR 572
Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
I G FV + G S+ + G+ V++ IL+V+ E RI LS+K
Sbjct: 573 IAPFGAFVELEPGVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIK 632
Query: 832 Q 832
+
Sbjct: 633 E 633
|
Length = 647 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-10
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
+ G +T+I G FV NGV+G P SEL +P + VG VK +++S
Sbjct: 5 VVEGTVTEITPGGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEK 64
Query: 648 RRINLSF 654
RI LS
Sbjct: 65 GRIILSL 71
|
Length = 72 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-10
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 576 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
+ +++++ ++ HG++ I +G FV F G+ G AP+S + + +PS + GQ
Sbjct: 5 LPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQS 64
Query: 636 VKCRIMSSIPASRRINLSF 654
V ++ S +R LS
Sbjct: 65 VTAKVTSVDEEKQRFLLSL 83
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-10
Identities = 107/481 (22%), Positives = 179/481 (37%), Gaps = 82/481 (17%)
Query: 135 MKLWGVVAEVNEKDLVI------CLPGGLRGLARAADALDPI--LDNEIEANEDNLLPTI 186
+ W + E E ++ + GGL A P +D + D L
Sbjct: 93 ERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIEGVRAFLPGSLVDVRPVRDLDPL---- 148
Query: 187 FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSL-----LYKGLSLETVQEGMVLTAYVK 241
+G+ + +L+LD + + LS R L + L ++ G V+ VK
Sbjct: 149 --IGKELEFKILELDKKR-----NNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVK 201
Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVVRSIDRTRKVVYL 296
+I D+G + G G L + ++ +D VK G ++ V S+D R V L
Sbjct: 202 NITDYGAFVDIG--GVDGLLHISEISWK-RVDHPSEVVKVGDEVKVKVISLDEERGRVSL 258
Query: 297 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
S + D K G V +V ++ + G + G V +
Sbjct: 259 SLKQLEEDPWEGIEKKYP---------VGDKVEGKVTNLTDYGAFVEIEEGVEGLVHV-- 307
Query: 354 LQNTFPTTNWKNDYNQHK------KVNARILFVDPTSRAVGLTL-----NPYLLHNRAPP 402
+W + +V ++L +DP R + L L NP
Sbjct: 308 -----SEISWTKKNVPSEVVKVGQEVEVKVLDIDPERRRISLGLKQLKENP----WEEFA 358
Query: 403 SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS 461
VGD+ + KV + D G + L+ V +SD++ + + +KYK+G
Sbjct: 359 DKHPVGDVV-EGKVKSITDFGAFVELEGGID-----GLVHLSDLSWDRPGEEAEKYKKGD 412
Query: 462 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 521
V ++L + + +K K G VVKGKV +V GA V+ GG
Sbjct: 413 EVEAKVLAVDKEKERISLGIKQLEESPWEEFSEKYKKGSVVKGKVKSVKDKGAFVELGGG 472
Query: 522 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSS 579
V+ L L +S KVG E+ V+ + K+++I ++ K K + L S
Sbjct: 473 VEGLIRLSELSR-------DVLKVGDEVEAVVVSIDKKNRKILLSIKALERKEEKEALES 525
Query: 580 Y 580
Y
Sbjct: 526 Y 526
|
Length = 541 |
| >gnl|CDD|224018 COG1093, SUI2, Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1468 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
G+IV+G +K+V YG ++ + E G H+SE++ V NI + G+KV K+L+
Sbjct: 11 EGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLR 70
Query: 1527 VDKEKRRISLGMK 1539
VD ++ I L +K
Sbjct: 71 VDPKRGHIDLSLK 83
|
Length = 269 |
| >gnl|CDD|239899 cd04452, S1_IF2_alpha, S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-10
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1468 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
G++V+ +K + G ++++ E N+ G+ +SELS + +I + + G K VK+++
Sbjct: 3 EGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIR 62
Query: 1527 VDKEKRRISLGMK 1539
VDKEK I L K
Sbjct: 63 VDKEKGYIDLSKK 75
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to complete the initiation complex, which is competent to begin translation. The IF2a subunit is a major site of control of the translation initiation process, via phosphorylation of a specific serine residue. This alpha subunit is well conserved in eukaryotes and archaea but is not present in bacteria. IF2 is a cold-shock-inducible protein. Length = 76 |
| >gnl|CDD|235188 PRK03987, PRK03987, translation initiation factor IF-2 subunit alpha; Validated | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 4e-10
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 17/116 (14%)
Query: 1468 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
G++V+G +K V+ +G F+T+ E G H+SE++ V NI + G+KV K+++
Sbjct: 8 EGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIR 67
Query: 1527 VDKEKRRISLGMKS----------SYFKND--ADN-LQMSSEE---ESDEAIEEVG 1566
VD K I L +K +KN+ AD L++++E+ +EA EEVG
Sbjct: 68 VDPRKGHIDLSLKRVNEHQRREKIQEWKNEQKADKWLELAAEKLGKSLEEAWEEVG 123
|
Length = 262 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-10
Identities = 88/406 (21%), Positives = 154/406 (37%), Gaps = 69/406 (16%)
Query: 730 LDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
LD + +N+++S + L +Q ++ VV G V NI + G FV LG + G
Sbjct: 155 LDQKRNNIVVSRRAYLEEERSQAREELLENLKEGDVVKGVVKNITDFGAFVD-LGGVDGL 213
Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 848
+ + S+ VGQ V+ ++ + E GRI+LSLKQ
Sbjct: 214 LHITDMSWKRVKHPSEYVKVGQEVKVKVIKFDKEKGRISLSLKQL--------------- 258
Query: 849 LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 908
+ E + F +G I G+V D+GV V EE + G + +
Sbjct: 259 -----------GEDPWE-AIEKKFPVGDKITGRVTNLTDYGVFVEIEE--GIEGLVHVSE 304
Query: 909 LA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ-AQKKK 959
++ V+ G ++ ILD+ R + L LK + + + +
Sbjct: 305 MSWVKKNSHPSKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANPWEQFEEKHPVGDRVT 364
Query: 960 RKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD--YNTQKFPQKQFLN 1017
K + D G A VE+ G +SD ++
Sbjct: 365 GKIKKITDFG------AFVEL------------EGGIDGLIHLSDISWDKDGREADHLYK 406
Query: 1018 GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPL 1077
I + L R+ L +K ++E K + Y VGS+V+ ++TEIK
Sbjct: 407 KGDEIE-AVVLAVDKEKKRISLGVKQLTENPWE-----KFAAKYKVGSVVKGKVTEIKDF 460
Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
++ G G I +E+++++ E+ K+G V A+++
Sbjct: 461 GAFVELPGGVEGLIRNSELSENR---DEDKTDEIKVGDEVEAKVVD 503
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 6e-10
Identities = 23/72 (31%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1527
VG++ G + R+ +G F+ + GL H+S+L+++ V+ +E + + G++VKVK++++
Sbjct: 619 VGEVYEGTVVRIVDFGAFVELLP-GKDGLVHISQLAKERVEKVEDVLKEGDEVKVKVIEI 677
Query: 1528 DKEKRRISLGMK 1539
D ++ RI L +K
Sbjct: 678 D-KQGRIRLSIK 688
|
Length = 692 |
| >gnl|CDD|240195 cd05690, S1_RPS1_repeat_ec5, S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-10
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKV 1527
G +V G+IK + +G+F+ ++ + GL H+S++S V + IY+ G++V+ +L +
Sbjct: 1 GTVVSGKIKSITDFGIFVGLDG-GIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNI 59
Query: 1528 DKEKRRISLG 1537
D E+ RISLG
Sbjct: 60 DVERERISLG 69
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 69 |
| >gnl|CDD|240202 cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-10
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G VVKG + + G V+ +K L P H+++ + P KKFK G ++ RVL V+
Sbjct: 1 GQVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEP 60
Query: 559 --KRITVTH 565
KR+ +T
Sbjct: 61 ERKRLVLTL 69
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 69 |
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (155), Expect = 8e-10
Identities = 81/349 (23%), Positives = 145/349 (41%), Gaps = 39/349 (11%)
Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSK 559
V G V + SFGA + GG L + MS + +P + K G + +V L K
Sbjct: 497 VSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 555
Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
RI ++ K L + + D + G +TKI G F+ G++G A SE
Sbjct: 556 RINLSLKHFQPDPWLEFENKFG-VND--VVKGRVTKIADFGAFIELAEGIEGLAHISEFS 612
Query: 620 -LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSG 675
+ +PS M +G V+C I+ + R++L E+ +
Sbjct: 613 WVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRR 672
Query: 676 VVDVVTPNAVV---------VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
+V V A + ++V + K T P +H ++ G E +
Sbjct: 673 IVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADH-------------ELEVGKEIEC 719
Query: 727 LLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
+++ D ++ + L K L ++ Q+ ++A + S V G V ++ + G FVR G +
Sbjct: 720 MVIECDPQARRIRLGVK-QLSDNPWQVFANAYGV--GSTVEGEVSSVTDFGIFVRVPGGV 776
Query: 786 TGFAPRSKAV---DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
G + V DG + + Y VG V++ I+D+N + ++ S++
Sbjct: 777 EGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVR 825
|
Length = 863 |
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (154), Expect = 1e-09
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 25/220 (11%)
Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV----KPGKKFKVGAELVFRVLG- 555
VVKG+V + FGA ++ G++ L H+SEF V KP K+G E+ +LG
Sbjct: 581 VVKGRVTKIADFGAFIELAEGIEGLA---HISEFSWVKKTSKPSDMVKIGDEVECMILGY 637
Query: 556 -VKSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
+++ R+++ K+ I + Y A T R++ K+ G F+ G+ G
Sbjct: 638 DIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIV------KVTNAGAFIEMEEGIDG 691
Query: 612 FAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
F +L P+ VG+ ++C ++ P +RRI L P +V +
Sbjct: 692 FLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVFA-NAY 750
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
+GS V G V VT + V V G +G + +HL ++
Sbjct: 751 GVGSTVEGEVSSVTDFGIFVRV--PGGVEGLVRKQHLVEN 788
|
Length = 863 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-09
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1521
N S+L G +V G ++ + YG+F+ L GL S +S++ V + ++ G+ V
Sbjct: 8 NFSDLKPGMVVHGYVRNITPYGVFVEFLG-GLTGLAPKSYISDEFVTDPSFGFKKGQSVT 66
Query: 1522 VKILKVDKEKRRISLGM 1538
K+ VD+EK+R L +
Sbjct: 67 AKVTSVDEEKQRFLLSL 83
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|225094 COG2183, Tex, Transcriptional accessory protein [Transcription] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-09
Identities = 26/80 (32%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 1460 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1519
+ ++++L G I+ G ++ V +G F+ I + GL H+S+LS+ V + + + G+
Sbjct: 650 VESITDLKPGMILEGTVRNVVDFGAFVDI-GVHQDGLVHISQLSDKFVKDPNEVVKVGDI 708
Query: 1520 VKVKILKVDKEKRRISLGMK 1539
VKVK+++VD ++RI+L M+
Sbjct: 709 VKVKVIEVDTARKRIALSMR 728
|
Length = 780 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 3e-09
Identities = 112/497 (22%), Positives = 185/497 (37%), Gaps = 121/497 (24%)
Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGVKS 558
+V+G + G V GV+A P + V+P + G EL F+V+ +
Sbjct: 117 IVEGVINGKVKGGFTVDL-NGVEAFLPGSQVD----VRPVRDTDPLEGKELEFKVIKLDK 171
Query: 559 KR--ITVTHKKTLVKSKLA----ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
KR I V+ + L + + +L + E + G + I +G FV GV G
Sbjct: 172 KRNNIVVSRRAVLEEERAEEREELLENLEEGQ---VVEGVVKNITDYGAFVDLG-GVDGL 227
Query: 613 APRSEL---GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-----ED 664
+++ ++ PS + +VG VK +++ +R++L +K E
Sbjct: 228 LHITDISWKRVNH---PSEVVNVGDEVKVKVLKFDKEKKRVSLG--LKQLGEDPWEAIEK 282
Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE---HATVM------- 714
+GS V G V +T V L + +E H + M
Sbjct: 283 KY-PVGSKVKGKVTNITDYGAFV---------------ELEEGIEGLVHVSEMSWTKKNK 326
Query: 715 --KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVC 770
V+ G E + +L +D E + L K N ++ +P VV G V
Sbjct: 327 HPSKVVSVGQEVEVMVLEIDEEKRRISLGLKQCKENPWEEFAEK----YPVGDVVEGKVK 382
Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDG-----------QRADLSKTYYVGQSVRSNILDV 819
NI + G FV G +DG + + + Y G V + +L V
Sbjct: 383 NITDFGAFVGLEG----------GIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKV 432
Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
+ E RI+L +KQ LEE + KH GS++
Sbjct: 433 DVEKERISLGIKQ----------------LEEDPFEEFAKKHK-----------KGSIVT 465
Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAER 932
G V E D G V E+ V G I +L+ VE G ++A ++++ + R
Sbjct: 466 GTVTEVKDKGAFVELED--GVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNR 523
Query: 933 LVDLSLKTVFIDRFREA 949
+ LS+K + +EA
Sbjct: 524 RISLSIKALDEAEEKEA 540
|
Length = 565 |
| >gnl|CDD|240202 cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-09
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
+V+G ++ + G F+ LS + V +L+D ++ PEK+F G V RVLSVEP
Sbjct: 2 QVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPE 61
Query: 1440 SKRVEVTL 1447
KR+ +TL
Sbjct: 62 RKRLVLTL 69
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 69 |
| >gnl|CDD|240190 cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-09
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 1469 GDIVIGQIKRVESYGLFITI--ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
G ++ G + V +G F+ I + GL H+S++++ V + + G+ V+VK++
Sbjct: 1 GMVLEGVVTNVTDFGAFVDIGVKQD---GLIHISKMADRFVSHPSDVVSVGDIVEVKVIS 57
Query: 1527 VDKEKRRISL 1536
+D+E+ RISL
Sbjct: 58 IDEERGRISL 67
|
The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea. Length = 68 |
| >gnl|CDD|240213 cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-09
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 760 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
+ G V + + G F+ G ++G +S+ D + AD SK + VG VR+ +L
Sbjct: 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLK 60
Query: 819 VNSETGRITLSLKQS 833
+++E RI+L LK S
Sbjct: 61 IDAEKKRISLGLKAS 75
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 77 |
| >gnl|CDD|233703 TIGR02063, RNase_R, ribonuclease R | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-09
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET-----------IYR 1515
+G+ G I V S+GLF+ +EN + GL H+S L +D+ E ++R
Sbjct: 626 KIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFR 685
Query: 1516 AGEKVKVKILKVDKEKRRI 1534
G++VKV+++K D + +I
Sbjct: 686 LGDRVKVRVVKADLDTGKI 704
|
This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans [Transcription, Degradation of RNA]. Length = 709 |
| >gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 7e-09
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 1442 RVEVTLKTSDSRTASQSEINNL-SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1500
V++ ++ A+ I + + VG I G++ R+ +G F+ I GL H+S
Sbjct: 591 TVKIAASDGEAAEAAIKMIEGITAEPEVGKIYEGKVVRIMDFGAFVEILP-GKDGLVHIS 649
Query: 1501 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536
E++ + V+ +E + + G++VKVK+L++DK + RI L
Sbjct: 650 EIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684
|
Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family) [Transcription, Degradation of RNA]. Length = 684 |
| >gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 9e-09
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ G VVKG V V GA V GV+ P+ +S+ + P + KVG E+ +VL
Sbjct: 1 KPEEGDVVKGTVTRVTKGGAFVDLGNGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVL 60
Query: 555 GV--KSKRITVTHK 566
V + RI ++ +
Sbjct: 61 KVDKERGRIILSIR 74
|
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Length = 74 |
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 9e-09
Identities = 64/281 (22%), Positives = 114/281 (40%), Gaps = 37/281 (13%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1318
EGD+V G ++++ G V++ P + G VH +EL V DE
Sbjct: 202 EGDVVEGTVTRLAP--FGAFVELAPGVEGMVHISELSWSRVQKA----DE-------AVS 248
Query: 1319 EGQFVKCKVLEISRTVRGT-FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
G V+ KVL I R +G + LS++ + D V + L
Sbjct: 249 VGDTVRVKVLGIERAKKGKGLRISLSIKQA--------GGDPWDTVG---------DRLK 291
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSV 1436
V G V + G F+ + ++ V +S +S V PE G VA ++ +
Sbjct: 292 AGDKVTGKVVRLAPFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIKDI 351
Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1496
+P +R+ ++L+ ++ + G V G +++ +GLF+ + + GL
Sbjct: 352 DPAKRRISLSLRDAEGDPWADVA----ERFAPGTTVTGTVEKRAQFGLFVNLA-PGVTGL 406
Query: 1497 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537
S +S + G+ V + + ++D KR+ISL
Sbjct: 407 LPASVISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLA 447
|
Length = 491 |
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 9e-09
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 7/159 (4%)
Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
V G VK+ TS G FI L D + ++++S G+V P + G+ + +V+ ++ K
Sbjct: 497 VSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 555
Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1501
R+ ++LK + E + V D+V G++ ++ +G FI + + GL H+SE
Sbjct: 556 RINLSLKHFQPDPWLEFE----NKFGVNDVVKGRVTKIADFGAFIELAE-GIEGLAHISE 610
Query: 1502 LS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539
S + + G++V+ IL D + R+SLG+K
Sbjct: 611 FSWVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLK 649
|
Length = 863 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-08
Identities = 64/260 (24%), Positives = 104/260 (40%), Gaps = 28/260 (10%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE----IVKPGKKFKVGAELVFR 552
G VKGKV + +GA V+ G++ L H+SE P K VG E+
Sbjct: 285 PVGSKVKGKVTNITDYGAFVELEEGIEGLV---HVSEMSWTKKNKHPSKVVSVGQEVEVM 341
Query: 553 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
VL + + +RI++ K+ Y + G + I G FV G+
Sbjct: 342 VLEIDEEKRRISLGLKQCKENPWEEFAEKYPVGD---VVEGKVKNITDFGAFVGLEGGID 398
Query: 611 GFAPRSELGLD-PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----- 664
G S++ D G E +Y G V+ ++ RI+L +K ++ ED
Sbjct: 399 GLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERISLG--IK--QLEEDPFEEF 454
Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
K GS+V+G V V V + +G I L+ + V+K G E
Sbjct: 455 AKKHKKGSIVTGTVTEVKDKGAFVELEDG--VEGLIRASELSR--DRVEDATEVLKVGDE 510
Query: 724 FDQLLV-LDNESSNLLLSAK 742
+ ++ +D ++ + LS K
Sbjct: 511 VEAKVINIDRKNRRISLSIK 530
|
Length = 565 |
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 1415 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1474
YVE PE + +G+ + VE + + V+ + R ++ + + GD+V G
Sbjct: 151 YVEDPE-SY-VGQTFQFLITRVEENGRNIVVSRRALLEREQKEALEAFMETVKEGDVVEG 208
Query: 1475 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR-- 1532
+ R+ +G F+ + + G+ H+SELS V + G+ V+VK+L +++ K+
Sbjct: 209 TVTRLAPFGAFVELA-PGVEGMVHISELSWSRVQKADEAVSVGDTVRVKVLGIERAKKGK 267
Query: 1533 --RISLGMK 1539
RISL +K
Sbjct: 268 GLRISLSIK 276
|
Length = 491 |
| >gnl|CDD|235614 PRK05807, PRK05807, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1525
L G I+ G + + ++G F+ +E GL H+SE+++ +V +I + +KVKVK++
Sbjct: 3 LKAGSILEGTVVNITNFGAFVEVEGKT--GLVHISEVADTYVKDIREHLKEQDKVKVKVI 60
Query: 1526 KVDKEKRRISLGMK 1539
+D + +ISL +K
Sbjct: 61 SID-DNGKISLSIK 73
|
Length = 136 |
| >gnl|CDD|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-08
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1528
G G I +V+ G ++ N N+ G SELSE + + E +R G+ VKVK+L D
Sbjct: 1 GLKTHGTIVKVKPNGCIVSFYN-NVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCD 59
Query: 1529 KEKRRISLGMK 1539
E++R+ L K
Sbjct: 60 PEQQRLLLSCK 70
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-08
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
K G VV+G V + FGA V GGV L + +S + KP + VG E+ +VL +
Sbjct: 191 KEGDVVEGTVARLTDFGAFVDI-GGVDGLVHISELSHERVEKPSEVVSVGQEVEVKVLSI 249
Query: 557 --KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
+++RI+++ K TL + E + G + ++ G FV GV+G
Sbjct: 250 DWETERISLSLKDTLPGPWEGVEEKLPEGD---VIEGTVKRLTDFGAFVEVLPGVEGLVH 306
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
S++ PS + GQ VK +++ +RI+LS
Sbjct: 307 ISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLS 345
|
Length = 390 |
| >gnl|CDD|240196 cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1528
G IV G++ V++ G + + + + G +ELS D V++ ++ G++V+ KI VD
Sbjct: 1 GSIVTGKVTEVDAKGATVKLGD-GVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVD 59
Query: 1529 KEKRRISLGMKS 1540
++ R+ISL +K+
Sbjct: 60 RKNRKISLSIKA 71
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 73 |
| >gnl|CDD|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-08
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRI 561
V GKV+++ FG V+ GV+ L + +S+ + P + FKVG E+ +VL V ++
Sbjct: 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKG 60
Query: 562 TV 563
+
Sbjct: 61 RI 62
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. Length = 65 |
| >gnl|CDD|225094 COG2183, Tex, Transcriptional accessory protein [Transcription] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-08
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
E I DL P MI++G V+NV G F+ + D V +S LSD +V+ P + +G +V
Sbjct: 651 ESITDLKPGMILEGTVRNVVDFGAFVDIGVHQDGLVHISQLSDKFVKDPNEVVKVGDIVK 710
Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
+V+ V+ KR+ ++++ + S
Sbjct: 711 VKVIEVDTARKRIALSMRLDEEEGKLNS 738
|
Length = 780 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 8e-08
Identities = 103/587 (17%), Positives = 212/587 (36%), Gaps = 97/587 (16%)
Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
D+ + G +V G V + + V+V + K S+G IP ++ + V++ G
Sbjct: 15 SDEEFEPGDVVKGTVVSIEKDGVLVDIGGK--SEGVIPISEFSNEPV-----EDVVQVGD 67
Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
E + +L +++ L+LS + + +V G + ++ G V
Sbjct: 68 EVEVLVLRVEDGEGELVLSRR--KAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDI 125
Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
G + F P S VD + +G+ + IL+++ + + LS + + +
Sbjct: 126 EG-VRAFLPGSL-VDVRPVR-DLDPLIGKELEFKILELDKKRNNVVLSRR----AVLEEE 178
Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
++ L K+ +G V+EG V D+G V V
Sbjct: 179 RSEQREELLNKLE-------------------VGEVVEGVVKNITDYGAFVDIGG---VD 216
Query: 902 GFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
G + +++ V+ G ++ ++ + + V LSLK + D +
Sbjct: 217 GLLHISEISWKRVDHPSEVVKVGDEVKVKVISLDEERGRVSLSLKQLEEDPWEGI----- 271
Query: 955 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKF--P 1011
K V V V + + + + G VS+ + K P
Sbjct: 272 ----------EKKYPVGDKVEGKVTNLTDYGAFVEIEEGVE---GLVHVSEISWTKKNVP 318
Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
+ GQ V V L R+ L LK + E + + VG +V+ ++
Sbjct: 319 SEVVKVGQEVE--VKVLDIDPERRRISLGLKQLKENPWE-----EFADKHPVGDVVEGKV 371
Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
I ++ G G +H+++++ D+ +K G V A+++A + +
Sbjct: 372 KSITDFGAFVELEGGIDGLVHLSDLSWDRPGEEA---EKYKKGDEVEAKVLAVDKEKERI 428
Query: 1132 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1191
+ +L P E K G V G V V ++ A + + ++ +
Sbjct: 429 SLGIKQLEESP----WEEFSEKY-------KKGSVVKGKVKSVKDKGAFVELGGGVEGLI 477
Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
+ + + + +G V V+SI+K+ + + L ++ +
Sbjct: 478 RLSELSRD---------VLKVGDEVEAVVVSIDKKNRKILLSIKALE 515
|
Length = 541 |
| >gnl|CDD|239918 cd04472, S1_PNPase, S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 8e-08
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 10/72 (13%)
Query: 1469 GDIVIGQIKRVESYGLFITI----ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1524
G I G++ +++ +G F+ I + GL H+SELS++ V+ +E + + G++VKVK+
Sbjct: 1 GKIYEGKVVKIKDFGAFVEILPGKD-----GLVHISELSDERVEKVEDVLKVGDEVKVKV 55
Query: 1525 LKVDKEKRRISL 1536
++VD + RISL
Sbjct: 56 IEVDD-RGRISL 66
|
PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo. Length = 68 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
SD+KPGMVV G V + +G V+F GG+ L P ++S+ + P FK G + +V
Sbjct: 10 SDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKV 69
Query: 554 LGV--KSKRITVT 564
V + +R ++
Sbjct: 70 TSVDEEKQRFLLS 82
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-07
Identities = 84/360 (23%), Positives = 142/360 (39%), Gaps = 51/360 (14%)
Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQ 281
LE ++EG V+ VK+I D G + G G L +++ ++ VK G ++
Sbjct: 181 LLENLKEGDVVKGVVKNITDFGAFVDLG--GVDGLLHITDMSWKRVKHPSEYVKVGQEVK 238
Query: 282 GVVRSIDRTRKVVYLS---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
V D+ + + LS D + K G ++ RV ++ + GV
Sbjct: 239 VKVIKFDKEKGRISLSLKQLGEDPWEA-IEKKFP--------VGDKITGRVTNLTDYGVF 289
Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
+ G V + + ++ + +V IL +DP R + L L NP
Sbjct: 290 VEIEEGIEGLVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANP 349
Query: 394 YLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL---DIPSTPVSTPA--YVTISD 444
+ H K+ I D V ++ G+ L+ DI A D
Sbjct: 350 WEQFEEKHPVGDRVTGKIKKITDFGAFVELEGGIDGLIHLSDISWDKDGREADHLYKKGD 409
Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
E V ++K+ K R+ LG + L + +E + K G VVKG
Sbjct: 410 EIEAVVLAVDKEKK-----RIS-LGVKQLT--------ENPWEKFAAKY---KVGSVVKG 452
Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRIT 562
KV + FGA V+ PGGV+ L +SE + KVG E+ +V+ + K+++++
Sbjct: 453 KVTEIKDFGAFVELPGGVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKVS 512
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
G+ G ++ V G IV F VK P +SE I P + F+VG + +VL
Sbjct: 1 GLKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDP 60
Query: 557 KSKRITVTHK 566
+ +R+ ++ K
Sbjct: 61 EQQRLLLSCK 70
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|180908 PRK07252, PRK07252, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1527
+GD + G I ++ YG F+ +EN GL H+SE+ +DNI + + GE+V V+++
Sbjct: 3 IGDKLKGTITGIKPYGAFVALEN-GTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDF 61
Query: 1528 DKEKRRISLGMKS 1540
D+ + SL +++
Sbjct: 62 DEYTGKASLSLRT 74
|
Length = 120 |
| >gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-07
Identities = 75/288 (26%), Positives = 114/288 (39%), Gaps = 46/288 (15%)
Query: 662 SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
+ ++ G +V G V V N V V V K S+G IP L + + +K +K G
Sbjct: 295 ELEKQIRRGDIVKGTVVSVNENEVFVDVGYK--SEGVIPLRELTL--DEISSLKESVKVG 350
Query: 722 YEFDQLLV-LDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
E + ++ L++E ++LS K + ++L V G V +++ G V
Sbjct: 351 DEIEVKVLKLEDEDGYVVLSKKEADREKAWKEL---EEAFENGEPVKGKVKEVVKGGLLV 407
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN-SETGRITLSLKQSCCSST 838
G + F P S G DLS+ Y GQ + I++ N ++ LS K
Sbjct: 408 D-YGGVRAFLPASHVELGYVEDLSE--YKGQELEVKIIEFNRKRRKKVVLSRKA------ 458
Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
L EEK E W G V+EG+V DFG V
Sbjct: 459 --------ILEEEKEKK--------KEETW-NSLEEGDVVEGEVKRLTDFGAFVDIG--- 498
Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
V G + +++ VE G I+ ILD+ K + + LSLK
Sbjct: 499 GVDGLLHVSEISWGRVEKPSDVLKVGDEIKVYILDIDKENKKLSLSLK 546
|
Length = 647 |
| >gnl|CDD|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-07
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 1452 SRTA----SQSEI--NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1505
SR A +QSE+ L+ L G + G + + ++G F+ + + GL HVSELS
Sbjct: 186 SRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWK 243
Query: 1506 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541
H+D+ + G++V V++L VD ++ R+SL +K++
Sbjct: 244 HIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKAT 279
|
Length = 486 |
| >gnl|CDD|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
G + I K G FV +GV+G SEL +PS ++ VG V+ +++ P R
Sbjct: 2 TGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGR 61
Query: 650 INLS 653
I+LS
Sbjct: 62 ISLS 65
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. Length = 65 |
| >gnl|CDD|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
V G V +I + G FV + G S+ D D S+ + VG V +L+V+ E G
Sbjct: 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKG 60
Query: 825 RITLS 829
RI+LS
Sbjct: 61 RISLS 65
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. Length = 65 |
| >gnl|CDD|240201 cd05696, S1_Rrp5_repeat_hs4, S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
G + D KV +V+ LG + + +V IS +++++V +K G+ + RI
Sbjct: 1 GAVVDSVKVTKVEPDLGAVFE---LKDGLLGFVHISHLSDDKVPSDTGPFKAGTTHKARI 57
Query: 468 LGFRHLEGL 476
+G+ ++GL
Sbjct: 58 IGYSPMDGL 66
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 71 |
| >gnl|CDD|240210 cd05705, S1_Rrp5_repeat_hs14, S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-07
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVE 1437
+++GYV +VT +G F LS + +VL N++ +V P K P GKL+ +VLSV
Sbjct: 6 LLRGYVSSVTKQGVFFRLSSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVN 65
Query: 1438 PLSKRVEVT 1446
VE++
Sbjct: 66 SEKNLVELS 74
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 74 |
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 6e-07
Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 10/221 (4%)
Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDV--- 496
V IS+++ V+K ++ G VRV++LG + + S + V
Sbjct: 230 VHISELSWSRVQKADEAVSVGDTVRVKVLGIERAKKGKGLRISLSIKQAGGDPWDTVGDR 289
Query: 497 -KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-IVKPGKKFKVGAELVFRV- 553
K G V GKV+ + FGA V+ G++ L + MS + KP G + ++
Sbjct: 290 LKAGDKVTGKVVRLAPFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIK 349
Query: 554 -LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
+ +RI+++ + + +A T G + K + G FV GV G
Sbjct: 350 DIDPAKRRISLSLRDAEGDPWADVAERFAPGT---TVTGTVEKRAQFGLFVNLAPGVTGL 406
Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
P S + G V + A R+I+L+
Sbjct: 407 LPASVISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLA 447
|
Length = 491 |
| >gnl|CDD|223631 COG0557, VacB, Exoribonuclease R [Transcription] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-07
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETI 1513
VG+ G + V S+G F+ + L GL H+S L +D+ + +
Sbjct: 619 KKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKV 678
Query: 1514 YRAGEKVKVKILKVDKEKRRISLGM 1538
YR G++VKVK+ VD ++R+I +
Sbjct: 679 YRLGDEVKVKVTSVDLDERKIDFEL 703
|
Length = 706 |
| >gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 7e-07
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKP 498
+S+++ V K K G ++V IL + + L+ + L +E +
Sbjct: 506 VSEISWGRVEKPSDVLKVGDEIKVYILDIDKENKKLSLSLKKLLPDPWENVE---EKYPV 562
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
G +V GKV+ + FGA V+ GV L + +S I KP G E+ ++L V
Sbjct: 563 GSIVLGKVVRIAPFGAFVELEPGVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDP 622
Query: 558 -SKRITVTHKKT 568
KRI ++ K+
Sbjct: 623 EEKRIRLSIKEV 634
|
Length = 647 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
VG +V+ +TEI P + G G G I I+E++D + V++ K+G V +++
Sbjct: 2 VGDVVEGTVTEITPGGAFVDLGNGVEGLIPISELSDKR---VKDPEEVLKVGDEVKVKVL 58
Query: 1123 AKSNK 1127
+ +
Sbjct: 59 SVDEE 63
|
Length = 72 |
| >gnl|CDD|240198 cd05693, S1_Rrp5_repeat_hs1_sc1, S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN------------ 1110
G LV ++ EI L+L + G G + IT ++D + +E L
Sbjct: 3 EGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPD 62
Query: 1111 ----FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPS 1143
F +GQ V ++++ KK ELS++P
Sbjct: 63 LEDLFSVGQLVRCKVVSLDKSKSGKKRI--ELSLEPE 97
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 100 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-06
Identities = 87/357 (24%), Positives = 148/357 (41%), Gaps = 39/357 (10%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+V+ G VV G+V+ V+ V G V+ + P+ +S I KVG EL
Sbjct: 13 KEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDELEVY 72
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
VL V+ + L K +L ++ + ++ + +T++ K G V G
Sbjct: 73 VLKVEDGEGNL----LLSKRRLEAEKAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDV-EG 127
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---- 664
V+GF P S + E S + G+ ++ +I+ P R+ LS R +
Sbjct: 128 VRGFIPASLISTR-FVEDFSDF-KGKTLEVKIIELDPEKNRVILS-----RRAVVEEERA 180
Query: 665 -------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKS 716
+K G +V G V +T V + G G + L+ + +E
Sbjct: 181 AKKEELLSSLKEGDVVEGTVARLTDFGAFVDI---GGVDGLVHISELSHERVEKP---SE 234
Query: 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
V+ G E + ++L +D E+ + LS K +L + + + V+ G V + +
Sbjct: 235 VVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEGV---EEKLPEGDVIEGTVKRLTDF 291
Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
G FV L + G S+ A S+ GQ V+ +L+VN E RI+LS+K
Sbjct: 292 GAFVEVLPGVEGLVHISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKA 348
|
Length = 390 |
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-06
Identities = 83/358 (23%), Positives = 139/358 (38%), Gaps = 53/358 (14%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G+ V+GKV G V+ G +A CP+ + + P + VG F + V+
Sbjct: 116 GVPVEGKVTGTCKGGFNVEVLGR-RAFCPVSQIDLRYVEDP--ESYVGQTFQFLITRVEE 172
Query: 559 --KRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
+ I V+ + L + + L ++ E + + G +T++ G FV GV+G
Sbjct: 173 NGRNIVVSRRALLEREQKEALEAFMETVKEGDVVEGTVTRLAPFGAFVELAPGVEGMVHI 232
Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR----RINLSFMMKPTRVSED------D 665
SEL + VG V+ +++ A + RI+LS + D D
Sbjct: 233 SELSWSRVQKADEAVSVGDTVRVKVLGIERAKKGKGLRISLSI----KQAGGDPWDTVGD 288
Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF- 724
+K G V+G V + P V I G E L H+ + + V KP
Sbjct: 289 RLKAGDKVTGKVVRLAPFGAFVE-ILPG-------IEGLV-HVSEMSWTRRVNKPEDVVA 339
Query: 725 --DQLLV----LDNESSNLLLSAKYSL----INSAQQLPSDASHIHPNSVVHGYVCNIIE 774
D + V +D + LS + + + A++ P + V G V +
Sbjct: 340 PGDAVAVKIKDIDPAKRRISLSLRDAEGDPWADVAERFA-------PGTTVTGTVEKRAQ 392
Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY---YVGQSVRSNILDVNSETGRITLS 829
G FV +TG P S RA TY G SV + ++++ +I+L+
Sbjct: 393 FGLFVNLAPGVTGLLPASVI---SRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLA 447
|
Length = 491 |
| >gnl|CDD|240191 cd05686, S1_pNO40, S1_pNO40: pNO40 , S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1471 IVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKE 1530
I G++ V YG F+ I GL H S +S VD+ + GEKV VK++ +
Sbjct: 6 IFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGRE-M 64
Query: 1531 KRRISLGMK 1539
K ++ L +
Sbjct: 65 KDKMKLSLS 73
|
pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis. Length = 73 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 7e-06
Identities = 84/364 (23%), Positives = 142/364 (39%), Gaps = 62/364 (17%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
+ G VV+G V + +GA V GGV L + +S + P + VG E+ +VL
Sbjct: 200 EEGQVVEGVVKNITDYGAFVDL-GGVDGLLHITDISWKRVNHPSEVVNVGDEVKVKVLKF 258
Query: 557 --KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
+ KR+++ K+ AI Y + G +T I +G FV G++G
Sbjct: 259 DKEKKRVSLGLKQLGEDPWEAIEKKYPVGS---KVKGKVTNITDYGAFVELEEGIEGLVH 315
Query: 615 RSELGLD----PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED------ 664
SE+ PS + VGQ V+ ++ RRI+L +K + E+
Sbjct: 316 VSEMSWTKKNKH---PSKVVSVGQEVEVMVLEIDEEKRRISLG--LK--QCKENPWEEFA 368
Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG------------TIPTEHLADHLEHAT 712
+ +G +V G V +T V G G E + +
Sbjct: 369 EKYPVGDVVEGKVKNITDFGAFV-----GLEGGIDGLVHLSDISWDKKGEEAVELYKKGD 423
Query: 713 VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHG 767
+++V+ L +D E + L K QL D A S+V G
Sbjct: 424 EVEAVV---------LKVDVEKERISLGIK--------QLEEDPFEEFAKKHKKGSIVTG 466
Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
V + + G FV + G S+ + D ++ VG V + +++++ + RI+
Sbjct: 467 TVTEVKDKGAFVELEDGVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRIS 526
Query: 828 LSLK 831
LS+K
Sbjct: 527 LSIK 530
|
Length = 565 |
| >gnl|CDD|227438 COG5107, RNA14, Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 7e-06
Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 26/246 (10%)
Query: 1675 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA-YFN 1733
+++ + VW Y +++ ++D +KA ER + E + L ++++ Y+
Sbjct: 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGI------EMSPSLTMFLSEYYE 344
Query: 1734 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1793
L N+ EEAV F + Q K + + + ELL K I K
Sbjct: 345 LVND-----EEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFV 399
Query: 1794 CKVWLRRVQRLLKQQQEGVQAVVQRALL----SLPRHKHIKFISQTAILEFKN-GVADRG 1848
V L V R + G++A R L H +I A +E+ G
Sbjct: 400 FCVHLNYVLR-----KRGLEAA--RKLFIKLRKEGIVGHHVYI-YCAFIEYYATGDRATA 451
Query: 1849 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1908
++FE L ++P T YL IR+ D + R LFE ++ L ++K ++ K +E
Sbjct: 452 YNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE-RLEKTQLKRIYDKMIE 510
Query: 1909 YEKSVG 1914
YE VG
Sbjct: 511 YESMVG 516
|
Length = 660 |
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 8e-06
Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1514
A Q+ +++H+ D V G +K S+G FI + + GL HV+++S HV
Sbjct: 480 ARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDLGGFD--GLLHVNDMSWGHVARPREFV 537
Query: 1515 RAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1546
+ G+ +++K++++D+ ++RI+L +K +F+ D
Sbjct: 538 KKGQTIELKVIRLDQAEKRINLSLK--HFQPD 567
|
Length = 863 |
| >gnl|CDD|240194 cd05689, S1_RPS1_repeat_ec4, S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 9e-06
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 1474 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKR 1532
G++ + YG F+ +E + GL HVSE+ + + + + G++V+V +L +D+E+R
Sbjct: 9 GKVTNLTDYGCFVELEE-GVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERR 67
Query: 1533 RISLG 1537
RISLG
Sbjct: 68 RISLG 72
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 72 |
| >gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-05
Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 51/208 (24%)
Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
VV G V + + G FV +G + G S+ G+ S VG ++ ILD++ E
Sbjct: 480 VVEGEVKRLTDFGAFVD-IGGVDGLLHVSEISWGRVEKPSDVLKVGDEIKVYILDIDKEN 538
Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLE---EKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
+++LSLK+ LL E + E + +GS++ G
Sbjct: 539 KKLSLSLKK---------------LLPDPWENVE---------------EKYPVGSIVLG 568
Query: 881 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERL 933
KV FG V E D G + Q++ ++ G ++A IL+V E+
Sbjct: 569 KVVRIAPFGAFVELEPGVD--GLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKR 626
Query: 934 VDLSLKTVFIDRFREANSNRQAQKKKRK 961
+ LS+K E +K
Sbjct: 627 IRLSIK--------EVEEEPGDIEKVEL 646
|
Length = 647 |
| >gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
G +T++ K G FV NGV+GF P SE+ D +P + VG V+ +++ RI
Sbjct: 10 GTVTRVTKGGAFVDLGNGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVLKVDKERGRI 69
Query: 651 NLS 653
LS
Sbjct: 70 ILS 72
|
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Length = 74 |
| >gnl|CDD|215104 PLN00207, PLN00207, polyribonucleotide nucleotidyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 1e-05
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 1443 VEVTLKTSDSRTASQSEINNLSNL-HVGDIVIG-QIKRVESYGLFITIENTNLVGLCHVS 1500
V++T K S S++ I++L+ + VGDI +IK + YG F+ I GLCH+S
Sbjct: 727 VKITAKDLSSLEKSKAIISSLTMVPTVGDIYRNCEIKSIAPYGAFVEIA-PGREGLCHIS 785
Query: 1501 ELSEDHVDNIETIYRAGEKVKVKILKVDK 1529
ELS + + E ++ G+++ VK+++V+
Sbjct: 786 ELSSNWLAKPEDAFKVGDRIDVKLIEVND 814
|
Length = 891 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-05
Identities = 116/506 (22%), Positives = 180/506 (35%), Gaps = 126/506 (24%)
Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
A FE S+ + G +VKG V+A+D +V + PL EF+ + +
Sbjct: 16 AELFEE-SLKESETREGSIVKGTVVAIDKDYVLVDVGLKSEGRIPL---EEFKNEQGELE 71
Query: 543 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
KVG E+ V ++ ++ +K L E + I G I K G
Sbjct: 72 VKVGDEVEVYVERIEDGFGETVLSREKAKRLEAWDKLEKAFE--NGEIVEGVINGKVKGG 129
Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSF 654
F NGV+ F P S++ + P + G+ ++ +++ ++I SRR L
Sbjct: 130 -FTVDLNGVEAFLPGSQVDVRPV--RDTDPLEGKELEFKVIKLDKKRNNIVVSRRAVLEE 186
Query: 655 MMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
R ++L++ G +V GVV +T V + G + D L H
Sbjct: 187 ERAEER---EELLENLEEGQVVEGVVKNITDYGAFVDL-------GGV------DGLLHI 230
Query: 712 TVM--------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----AS 757
T + V+ G E ++L D E + L K QL D
Sbjct: 231 TDISWKRVNHPSEVVNVGDEVKVKVLKFDKEKKRVSLGLK--------QLGEDPWEAIEK 282
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGF-------------APRSKAVDGQRADLSK 804
S V G V NI + G FV + G P SK
Sbjct: 283 KYPVGSKVKGKVTNITDYGAFVELEEGIEGLVHVSEMSWTKKNKHP------------SK 330
Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE---EKIAMLQSSKH 861
VGQ V +L+++ E RI+L LKQ E E+ A K+
Sbjct: 331 VVSVGQEVEVMVLEIDEEKRRISLGLKQ---------------CKENPWEEFA----EKY 371
Query: 862 NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL--------AGAT 913
+G V+EGKV DFG V E + G + + A
Sbjct: 372 P-----------VGDVVEGKVKNITDFGAFVGLEG--GIDGLVHLSDISWDKKGEEAVEL 418
Query: 914 VESGSVIQAAILDVAKAERLVDLSLK 939
+ G ++A +L V + + L +K
Sbjct: 419 YKKGDEVEAVVLKVDVEKERISLGIK 444
|
Length = 565 |
| >gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
VV G V + + G FV + GF P S+ D + D + VG V +L
Sbjct: 1 KPEEGDVVKGTVTRVTKGGAFVDLGNGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVL 60
Query: 818 DVNSETGRITLSLK 831
V+ E GRI LS++
Sbjct: 61 KVDKERGRIILSIR 74
|
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Length = 74 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 24/73 (32%), Positives = 49/73 (67%)
Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1518
+N++ + VGD+V G++ +VE +F+ IE + G+ +SELS DH+++I + + G+
Sbjct: 8 SLNSVKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGD 67
Query: 1519 KVKVKILKVDKEK 1531
+++V +LKV+ +
Sbjct: 68 ELEVYVLKVEDGE 80
|
Length = 390 |
| >gnl|CDD|240196 cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-05
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
G +V GKV VD+ GA V+ GV+ +S + ++FKVG E+ ++ V
Sbjct: 1 GSIVTGKVTEVDAKGATVKLGDGVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDR 60
Query: 557 KSKRITVTHK 566
K+++I+++ K
Sbjct: 61 KNRKISLSIK 70
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 73 |
| >gnl|CDD|240208 cd05703, S1_Rrp5_repeat_hs12_sc9, S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-05
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 1382 VQGYVKNVTSKGCFIM-LSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEP 1438
V G+V NV SK + +S + ++ L +LSD +E PEK+FPIG+ + +V+ V+
Sbjct: 4 VTGFVNNV-SKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDK 62
Query: 1439 LSKRVEVTL 1447
K + ++
Sbjct: 63 EHKLLRLSA 71
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 73 |
| >gnl|CDD|240190 cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
M+++G V NVT G F+ + K D + +S ++D +V P +G +V +V+S++
Sbjct: 2 MVLEGVVTNVTDFGAFVDIGVKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEE 61
Query: 1440 SKRVEVT 1446
R+ ++
Sbjct: 62 RGRISLS 68
|
The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea. Length = 68 |
| >gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-05
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
+V+G V VT G F+ L ++ + +S +SD VE P++ +G V +VL V+
Sbjct: 4 EGDVVKGTVTRVTKGGAFVDLGNGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVLKVD 63
Query: 1438 PLSKRVEVTLK 1448
R+ ++++
Sbjct: 64 KERGRIILSIR 74
|
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Length = 74 |
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-05
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 32/177 (18%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF---------EIVKPGKKFKV 545
VK G VV+G V + FGA V+ GV+ + H+SE E V G +V
Sbjct: 199 TVKEGDVVEGTVTRLAPFGAFVELAPGVEGMV---HISELSWSRVQKADEAVSVGDTVRV 255
Query: 546 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA----EATDRL----ITHGWITKIE 597
+VLG I K ++ L+I + DRL G + ++
Sbjct: 256 ------KVLG-----IERAKKGKGLRISLSIKQAGGDPWDTVGDRLKAGDKVTGKVVRLA 304
Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLS 653
G FV G++G SE+ +P + G V +I PA RRI+LS
Sbjct: 305 PFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLS 361
|
Length = 491 |
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 8e-05
Identities = 46/199 (23%), Positives = 89/199 (44%), Gaps = 16/199 (8%)
Query: 1386 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP-EKEFPIGKLVAGRVLSVEPLSKRVE 1444
+ VT+ G FI + +D + + +LS P + E +GK + V+ +P ++R+
Sbjct: 673 IVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIR 732
Query: 1445 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN--TNLVGLCHVSE 1501
+ +K S + +N + VG V G++ V +G+F+ + LV H+ E
Sbjct: 733 LGVKQ-----LSDNPWQVFANAYGVGSTVEGEVSSVTDFGIFVRVPGGVEGLVRKQHLVE 787
Query: 1502 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ--MSSEEESD 1559
+ Y G++VK I+ ++ + R+++ ++ K D L MS+ D
Sbjct: 788 NRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVRDYQRKVQRDELSRYMSAPRGED 847
Query: 1560 EAIEEVGSYNRSSLLENSS 1578
E GS+ L+ +S
Sbjct: 848 E-----GSFTLGDLMRQTS 861
|
Length = 863 |
| >gnl|CDD|240211 cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-05
Identities = 16/71 (22%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1525
L VGDI+ G++ +V + + + N + G +++ +D+ + + ++ + V+ +L
Sbjct: 1 LKVGDILPGRVTKVNDRYVLVQLGN-KVTGPSFITDALDDYSEALPYKFKKNDIVRACVL 59
Query: 1526 KVDKEKRRISL 1536
VD ++I+L
Sbjct: 60 SVDVPNKKIAL 70
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 73 |
| >gnl|CDD|240215 cd05789, S1_Rrp4, S1_Rrp4: Rrp4 S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 8e-05
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE----TIYRAGEKVKVK 1523
VGD+VIG++ V + I N+ + +SE++ D E + G+ + +
Sbjct: 6 VGDVVIGRVTEVGFKRWKVDI-NSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAE 64
Query: 1524 ILKVDKEKRRISLGMKSS 1541
+ VD +SL +S
Sbjct: 65 VQSVD-SDGSVSLHTRSL 81
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". Length = 86 |
| >gnl|CDD|240209 cd05704, S1_Rrp5_repeat_hs13, S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 9e-05
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1318
EG + G ++K++ G L VQ+ G V L SD Y E +PL G+
Sbjct: 3 EGAVTLGMVTKVIPHSG-LTVQLPFGKTGLVSIFHL-----SD---SYTE---NPLEGFK 50
Query: 1319 EGQFVKCKVLEISRTVRGTFHVELSLR 1345
G+ V+C +L +LSLR
Sbjct: 51 PGKIVRCCILSKKDG-----KYQLSLR 72
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 72 |
| >gnl|CDD|240202 cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 19/68 (27%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1528
G +V G I+++ G+F+ + + ++ GL L++ + + E ++ G KVK ++L V+
Sbjct: 1 GQVVKGTIRKLRPSGIFVKL-SDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVE 59
Query: 1529 KEKRRISL 1536
E++R+ L
Sbjct: 60 PERKRLVL 67
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 69 |
| >gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-04
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED--HVDNI------ET---IYR 1515
VG++ G I V +G F+ +++ + GL HVS L D D + E+ YR
Sbjct: 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYR 701
Query: 1516 AGEKVKVKILKVDKEKRRISLGMKSS 1541
G++V+V++ V+ ++R+I + SS
Sbjct: 702 LGDRVEVRVEAVNMDERKIDFSLISS 727
|
Length = 813 |
| >gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
S VGS ++ +IT I P ++ G G +HI+E+ D V+++ + K+GQ V
Sbjct: 1 MSMKVGSKLKGKITGITPYGAFVELEGGKTGLVHISEIAD---GFVKDIHDHLKVGQEVK 57
Query: 1119 ARI--IAKSNKPDMKKSFLWELSIK 1141
++ I ++ K LSI+
Sbjct: 58 VKVLDIDENGK--------ISLSIR 74
|
Length = 129 |
| >gnl|CDD|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
+ G + V GC + + + S LS+ +++ PE+ F +G++V +VLS +P
Sbjct: 1 GLKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDP 60
Query: 1439 LSKRVEVTLK 1448
+R+ ++ K
Sbjct: 61 EQQRLLLSCK 70
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
G V G+V + N +T+ R + A++ + S S L+++++RF +G+ V G ++SI
Sbjct: 1 GDVVRGFVKNIANNGVFVTLGRGVDARVRV--SELSDSYLKDWKKRFKVGQLVKGKIVSI 58
Query: 1224 NKEKKLLRL 1232
+ + + +
Sbjct: 59 DPDNGRIEM 67
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 68 |
| >gnl|CDD|236305 PRK08582, PRK08582, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 21/72 (29%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1527
VG + G++ + ++G F+ + GL H+SE+++++V +I + G++V+VK+L V
Sbjct: 5 VGSKLQGKVTGITNFGAFVELPE-GKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNV 63
Query: 1528 DKEKRRISLGMK 1539
+ + +I L +K
Sbjct: 64 EDDG-KIGLSIK 74
|
Length = 139 |
| >gnl|CDD|240197 cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G VV+G V + FGA V+ GG+ L + ++ + K G ++ +VL + +
Sbjct: 1 GSVVEGTVTRLKPFGAFVELGGGISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA 60
Query: 559 K-RITVTHK 566
+ RI+++ K
Sbjct: 61 RGRISLSIK 69
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 69 |
| >gnl|CDD|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 762 NSVVHGYVCNIIETGCFVRFLGR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
VV G+V NI G FV LGR + S+ D D K + VGQ V+ I+ ++
Sbjct: 1 GDVVRGFVKNIANNGVFVT-LGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSID 59
Query: 821 SETGRITLS 829
+ GRI ++
Sbjct: 60 PDNGRIEMT 68
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 68 |
| >gnl|CDD|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1528
GD+V G +K + + G+F+T+ + VSELS+ ++ + + ++ G+ VK KI+ +D
Sbjct: 1 GDVVRGFVKNIANNGVFVTL-GRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSID 59
Query: 1529 KEKRRISL 1536
+ RI +
Sbjct: 60 PDNGRIEM 67
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 68 |
| >gnl|CDD|232937 TIGR00358, 3_prime_RNase, VacB and RNase II family 3'-5' exoribonucleases | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-04
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYR 1515
VG G+I V +G+F+ +++ + GL H+S L D+ +YR
Sbjct: 571 KVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYR 630
Query: 1516 AGEKVKVKILKVDKEKRRI 1534
G++V VK+ +V+ E R I
Sbjct: 631 IGDRVTVKLTEVNMETRSI 649
|
This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases [Transcription, Degradation of RNA]. Length = 654 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1318
GD+V G +++I G G V +G + G + +EL D+ DP
Sbjct: 2 VGDVVEGTVTEITPG--GAFVDLGNGVEGLIPISELS-----------DKRVKDPEEVLK 48
Query: 1319 EGQFVKCKVLEISRTVRGTFHVELSLR 1345
G VK KVL + + LSL+
Sbjct: 49 VGDEVKVKVLSVDEEKG---RIILSLK 72
|
Length = 72 |
| >gnl|CDD|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 7e-04
Identities = 53/169 (31%), Positives = 71/169 (42%), Gaps = 30/169 (17%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF---EIVKPGKKFKVGAELVFRVLG 555
G V KG V ++ +FGA V GGV L H+SE I P + +VG E+ VL
Sbjct: 209 GQVRKGVVSSIVNFGAFVDL-GGVDGLV---HVSELSWKHIDHPSEVVEVGQEVTVEVLD 264
Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATD--RLI--TH-------GWITKIEKHGCFVR 604
V R V+ LS A D + TH G +TK+ G FVR
Sbjct: 265 VDMDRERVS------------LSLKATQEDPWQQFARTHAIGQIVPGKVTKLVPFGAFVR 312
Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
G++G SEL P + VG V +++ RRI+LS
Sbjct: 313 VEEGIEGLVHISELAERHVEVPEQVVQVGDEVFVKVIDIDLERRRISLS 361
|
Length = 486 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 19/101 (18%)
Query: 116 SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEI 175
G LP + + GM + G V + + + GGL GLA + +E
Sbjct: 2 EGTLPTNFSDLK-----PGMVVHGYVRNITPYGVFVEFLGGLTGLA-----PKSYISDEF 51
Query: 176 EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSL 216
+ F GQ V+ V +D++K+ + LSL
Sbjct: 52 VTDPSFG----FKKGQSVTAKVTSVDEEKQ-----RFLLSL 83
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 8e-04
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
+ GS+V +TE+K ++ G G I +E++ D+ VE+ K+G V
Sbjct: 456 KKHKKGSIVTGTVTEVKDKGAFVELEDGVEGLIRASELSRDR---VEDATEVLKVGDEVE 512
Query: 1119 ARIIA--KSNK 1127
A++I + N+
Sbjct: 513 AKVINIDRKNR 523
|
Length = 565 |
| >gnl|CDD|240207 cd05702, S1_Rrp5_repeat_hs11_sc8, S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
GD+V ++ + L VQ+ +++GR+H +E + P PLS +
Sbjct: 1 GDLVKAKVKSVKPT--QLNVQLADNVHGRIHVSE---VFDEWPDGKN------PLSKFKI 49
Query: 1320 GQFVKCKVL 1328
GQ +K +V+
Sbjct: 50 GQKIKARVI 58
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 231 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQGVVRS 286
+ G V+ V I G + G G +P + L++ D +K G ++ V S
Sbjct: 1 EVGDVVEGTVTEITPGGAFVDLG-NGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLS 59
Query: 287 IDRTRKVVYLS 297
+D + + LS
Sbjct: 60 VDEEKGRIILS 70
|
Length = 72 |
| >gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 0.001
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
+V+ G V +G V+ + FGA V+ G L + +++ + K K G E+ +V
Sbjct: 615 REVEVGEVYEGTVVRIVDFGAFVELLPGKDGLVHISQLAKERVEKVEDVLKEGDEVKVKV 674
Query: 554 LGVKSK-RITVTHKKTL 569
+ + + RI ++ K L
Sbjct: 675 IEIDKQGRIRLSIKAVL 691
|
Length = 692 |
| >gnl|CDD|240202 cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
G I K+ G FV+ + ++G P L P + G VKCR++S P +R+
Sbjct: 6 GTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRL 65
Query: 651 NL 652
L
Sbjct: 66 VL 67
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 69 |
| >gnl|CDD|218774 pfam05843, Suf, Suppressor of forked protein (Suf) | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1869 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1915
YLD I L D R LFE ++ P ++K L+KK+++YE G+
Sbjct: 76 YLDYLISLNDDTNARVLFETVVTKLTPEPELKPLWKKFIKYESKFGD 122
|
This family consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster Suppressor of forked [Su(f)] protein shares homology with the yeast RNA14 protein and the 77-kDa subunit of human cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and an important role of the GU-rich sequence for this regulation to occur. Length = 271 |
| >gnl|CDD|235233 PRK04163, PRK04163, exosome complex RNA-binding protein Rrp4; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----NIETIYRAGEKVKVK 1523
VGD+VIG++ V G + I N+ VSE+ V+ ++ G+ + K
Sbjct: 63 VGDLVIGKVTDVTFSGWEVDI-NSPYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAK 121
Query: 1524 ILKVDKEKRRISLGMK 1539
+ VD R + L +K
Sbjct: 122 VKDVD-RTRDVVLTLK 136
|
Length = 235 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA---SAFEGLVFTHSDV 496
V IS+++ E V K + G V V++L + LK +EG+ +
Sbjct: 219 VHISELSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEGV---EEKL 275
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF---EIVKPGKKFKVGAELVFRV 553
G V++G V + FGA V+ GV+ L H+S+ I P + + G E+ +V
Sbjct: 276 PEGDVIEGTVKRLTDFGAFVEVLPGVEGLV---HISQISHKHIATPSEVLEEGQEVKVKV 332
Query: 554 LGV--KSKRI 561
L V + KRI
Sbjct: 333 LEVNEEEKRI 342
|
Length = 390 |
| >gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
S + G + I G FV G TG S+ DG D+ VGQ V+ +LD++ E
Sbjct: 7 SKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDID-E 65
Query: 823 TGRITLSLKQ 832
G+I+LS+++
Sbjct: 66 NGKISLSIRK 75
|
Length = 129 |
| >gnl|CDD|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
G++ I +G FV GV SEL + + VGQ+VK +I+S P + RI
Sbjct: 6 GFVKNIANNGVFVTLGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRI 65
Query: 651 NLS 653
++
Sbjct: 66 EMT 68
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 68 |
| >gnl|CDD|240211 cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
L I+ G V V + + L K+ +++ D Y E+ +F +V VLS
Sbjct: 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYKFKKNDIVRACVLS 60
Query: 1436 VEPLSKRVEVTLK 1448
V+ +K++ ++L+
Sbjct: 61 VDVPNKKIALSLR 73
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 73 |
| >gnl|CDD|240211 cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVG 190
+ G L G V +VN++ +++ L + G + DALD + LP F
Sbjct: 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALD---------DYSEALPYKFKKN 51
Query: 191 QLVSCIVLQLDDDKKEIGKRKIWLSLR 217
+V VL +D K KI LSLR
Sbjct: 52 DIVRACVLSVDVPNK-----KIALSLR 73
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 73 |
| >gnl|CDD|240211 cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
+ +G + G V KV++ + L+ + + FI D+ + SE ++ F V V
Sbjct: 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYK--FKKNDIVRACV 58
Query: 1221 LSINKEKKLLRLVLR 1235
LS++ K + L LR
Sbjct: 59 LSVDVPNKKIALSLR 73
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 73 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.004
Identities = 116/593 (19%), Positives = 217/593 (36%), Gaps = 90/593 (15%)
Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
P S+V G V I + FV + G P+ + D VG V
Sbjct: 12 KTEETRPGSIVKGTVVAINKDTVFVDVGLKSEGRIPKE-----EFLDAPLEIQVGDEVEV 66
Query: 815 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874
+ V G LS +++ Q H L + L+ + GS VEG I+
Sbjct: 67 YLDRVEDRFGETVLSREKA----------QRHELWIK----LEKAYEEGSI---VEGKIV 109
Query: 875 GSVIEGKVHESNDFGVVVSF--EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
G V G + D V +F DV L G T++ I+ + +
Sbjct: 110 GKVKGGFI---VDLNGVEAFLPGSQVDVKPIKDLDSLIGKTLK------FKIIKLDQKRN 160
Query: 933 LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 992
+ +S + + ++ + + E ++L V +V+ + + + L
Sbjct: 161 NIVVSRRAYL-----------EEERSQAREELLENLKEGDVVKGVVKNITDFGAFVDLGG 209
Query: 993 YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 1052
+ + +S + K P + GQ V V + GR+ L LK +
Sbjct: 210 VDGLLHITDMS-WKRVKHPSEYVKVGQEV--KVKVIKFDKEKGRISLSLK-----QLGED 261
Query: 1053 KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 1112
+ + VG + +T + + ++ G G +H++E++ K N + K
Sbjct: 262 PWEAIEKKFPVGDKITGRVTNLTDYGVFVEIEEGIEGLVHVSEMSWVKKNSHPSKV--VK 319
Query: 1113 IGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
G V I+ D ++ L L +K E FEE +G RVTG +
Sbjct: 320 KGDEVEVMIL----DIDPERRRL-SLGLKQCKANPWEQ-----FEE-KHPVGDRVTGKIK 368
Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
K+ + A + + + + + D +++ +E + G + VL+++KEKK + L
Sbjct: 369 KITDFGAFVELEGGIDGLIHLSDISWDKDG-READHLYKKGDEIEAVVLAVDKEKKRISL 427
Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
++ + +K G +V G++++I G V++ + G + +
Sbjct: 428 GVKQLTENPWEKFAAKYK--------VGSVVKGKVTEIKD--FGAFVELPGGVEGLIRNS 477
Query: 1293 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1345
EL + D G V+ KV++I + R V LS++
Sbjct: 478 ELS-----------ENRDEDKTDEIKVGDEVEAKVVDIDKKNR---KVSLSVK 516
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.004
Identities = 88/392 (22%), Positives = 154/392 (39%), Gaps = 60/392 (15%)
Query: 591 GWITKIEKHGCFVRFYN-GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
G + K+E FV V+G P SEL D + + + VG ++ ++
Sbjct: 23 GEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDELEVYVLKVEDGEGN 82
Query: 650 INLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
+ LS + D L + G +V V V +VV V +G IP ++
Sbjct: 83 LLLSKRRLEAEKAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDV---EGVRGFIPASLIST 139
Query: 707 H-LEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN 762
+E + K G + ++ LD E + ++LS + +++ + + S +
Sbjct: 140 RFVEDFSDFK-----GKTLEVKIIELDPEKNRVILSRR-AVVEEERAAKKEELLSSLKEG 193
Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
VV G V + + G FV +G + G S+ + S+ VGQ V +L ++ E
Sbjct: 194 DVVEGTVARLTDFGAFVD-IGGVDGLVHISELSHERVEKPSEVVSVGQEVEVKVLSIDWE 252
Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
T RI+LSLK + + +EEK+ G VIEG V
Sbjct: 253 TERISLSLKDTLPGPWE--------GVEEKLP-------------------EGDVIEGTV 285
Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVD 935
DFG V E V G + Q++ + E G ++ +L+V + E+ +
Sbjct: 286 KRLTDFGAFV--EVLPGVEGLVHISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRIS 343
Query: 936 LSLKTVFIDRFREANSNRQAQKKKRKREASKD 967
LS+K + E + +++ R+
Sbjct: 344 LSIKAL------EEAPAEEEDRREEYRQYELP 369
|
Length = 390 |
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.004
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 19/182 (10%)
Query: 1366 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFP 1424
P LE N +V+G V + G FI L+ ++ +S S P
Sbjct: 566 PDPWLEFENKFGVNDVVKGRVTKIADFGAFIELAEGIEGLAHISEFSWVKKTSKPSDMVK 625
Query: 1425 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1484
IG V +L + + RV + LK + + E + VG +I +V + G
Sbjct: 626 IGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIE----ARYPVGARFTRRIVKVTNAGA 681
Query: 1485 FITIENTNLVGLCHVSELS-------EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537
FI +E + G HV +LS DH + G++++ +++ D + RRI LG
Sbjct: 682 FIEMEE-GIDGFLHVDDLSWVKRTRPADHELEV------GKEIECMVIECDPQARRIRLG 734
Query: 1538 MK 1539
+K
Sbjct: 735 VK 736
|
Length = 863 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1935 | |||
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 100.0 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 100.0 | |
| COG0539 | 541 | RpsA Ribosomal protein S1 [Translation, ribosomal | 100.0 | |
| COG0539 | 541 | RpsA Ribosomal protein S1 [Translation, ribosomal | 100.0 | |
| PRK12269 | 863 | bifunctional cytidylate kinase/ribosomal protein S | 100.0 | |
| PRK06299 | 565 | rpsA 30S ribosomal protein S1; Reviewed | 100.0 | |
| TIGR00717 | 516 | rpsA ribosomal protein S1. This model provides tru | 100.0 | |
| PRK12269 | 863 | bifunctional cytidylate kinase/ribosomal protein S | 100.0 | |
| PRK06299 | 565 | rpsA 30S ribosomal protein S1; Reviewed | 100.0 | |
| TIGR00717 | 516 | rpsA ribosomal protein S1. This model provides tru | 100.0 | |
| PRK13806 | 491 | rpsA 30S ribosomal protein S1; Provisional | 100.0 | |
| PRK13806 | 491 | rpsA 30S ribosomal protein S1; Provisional | 100.0 | |
| PRK07899 | 486 | rpsA 30S ribosomal protein S1; Reviewed | 100.0 | |
| PRK07899 | 486 | rpsA 30S ribosomal protein S1; Reviewed | 100.0 | |
| PRK06676 | 390 | rpsA 30S ribosomal protein S1; Reviewed | 100.0 | |
| PRK06676 | 390 | rpsA 30S ribosomal protein S1; Reviewed | 100.0 | |
| PRK00087 | 647 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | 100.0 | |
| PRK00087 | 647 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | 100.0 | |
| PRK07400 | 318 | 30S ribosomal protein S1; Reviewed | 100.0 | |
| PRK07400 | 318 | 30S ribosomal protein S1; Reviewed | 99.97 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.92 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.82 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.78 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.72 | |
| COG2996 | 287 | Predicted RNA-bindining protein (contains S1 and H | 99.67 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.65 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.64 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.63 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.62 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.61 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.61 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.58 | |
| PTZ00248 | 319 | eukaryotic translation initiation factor 2 subunit | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| COG1098 | 129 | VacB Predicted RNA binding protein (contains ribos | 99.55 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.54 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.53 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.51 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.51 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.51 | |
| COG2996 | 287 | Predicted RNA-bindining protein (contains S1 and H | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.48 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.47 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.46 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.43 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.41 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.4 | |
| COG1098 | 129 | VacB Predicted RNA binding protein (contains ribos | 99.4 | |
| cd05705 | 74 | S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a | 99.38 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| cd05705 | 74 | S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a | 99.37 | |
| cd05693 | 100 | S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp | 99.37 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| cd05694 | 74 | S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.34 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 99.33 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.33 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.33 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.32 | |
| cd05694 | 74 | S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp | 99.32 | |
| cd05703 | 73 | S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: R | 99.31 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.3 | |
| PTZ00248 | 319 | eukaryotic translation initiation factor 2 subunit | 99.29 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.29 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.28 | |
| cd05703 | 73 | S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: R | 99.28 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.27 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.27 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.27 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.26 | |
| cd04461 | 83 | S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp | 99.26 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.24 | |
| cd05704 | 72 | S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a | 99.22 | |
| cd05686 | 73 | S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding dom | 99.21 | |
| cd05698 | 70 | S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp | 99.21 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 99.21 | |
| PF00575 | 74 | S1: S1 RNA binding domain; InterPro: IPR003029 Rib | 99.2 | |
| cd05708 | 77 | S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a | 99.19 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 99.18 | |
| cd05706 | 73 | S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a | 99.18 | |
| cd05696 | 71 | S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a t | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 99.18 | |
| cd05706 | 73 | S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a | 99.17 | |
| cd05704 | 72 | S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a | 99.17 | |
| cd05698 | 70 | S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp | 99.17 | |
| PF00575 | 74 | S1: S1 RNA binding domain; InterPro: IPR003029 Rib | 99.16 | |
| cd04461 | 83 | S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp | 99.15 | |
| cd05697 | 69 | S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a t | 99.15 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.15 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.14 | |
| PRK08582 | 139 | hypothetical protein; Provisional | 99.13 | |
| cd05707 | 68 | S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a | 99.13 | |
| cd05697 | 69 | S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a t | 99.12 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.11 | |
| cd05696 | 71 | S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a t | 99.11 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.11 | |
| cd05707 | 68 | S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a | 99.11 | |
| PRK08582 | 139 | hypothetical protein; Provisional | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.1 | |
| cd04452 | 76 | S1_IF2_alpha S1_IF2_alpha: The alpha subunit of tr | 99.09 | |
| cd05693 | 100 | S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp | 99.09 | |
| PRK07252 | 120 | hypothetical protein; Provisional | 99.07 | |
| cd05690 | 69 | S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal p | 99.06 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 99.06 | |
| cd05699 | 72 | S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a t | 99.06 | |
| PRK07252 | 120 | hypothetical protein; Provisional | 99.06 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.06 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.04 | |
| PRK05807 | 136 | hypothetical protein; Provisional | 99.04 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.03 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.03 | |
| cd05708 | 77 | S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a | 99.02 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.02 | |
| cd05691 | 73 | S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal p | 99.02 | |
| cd04452 | 76 | S1_IF2_alpha S1_IF2_alpha: The alpha subunit of tr | 99.01 | |
| cd05690 | 69 | S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal p | 99.01 | |
| cd05689 | 72 | S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal p | 99.0 | |
| cd05695 | 66 | S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a t | 99.0 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.97 | |
| cd05695 | 66 | S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a t | 98.97 | |
| cd05691 | 73 | S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal p | 98.97 | |
| cd05687 | 70 | S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Rib | 98.96 | |
| cd05686 | 73 | S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding dom | 98.96 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.96 | |
| cd05689 | 72 | S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal p | 98.95 | |
| PHA02945 | 88 | interferon resistance protein; Provisional | 98.94 | |
| cd05684 | 79 | S1_DHX8_helicase S1_DHX8_helicase: The N-terminal | 98.94 | |
| PRK08059 | 123 | general stress protein 13; Validated | 98.94 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.94 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.94 | |
| cd05687 | 70 | S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Rib | 98.93 | |
| cd05692 | 69 | S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal p | 98.92 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 98.91 | |
| PRK05807 | 136 | hypothetical protein; Provisional | 98.9 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.9 | |
| PRK08059 | 123 | general stress protein 13; Validated | 98.89 | |
| cd05685 | 68 | S1_Tex S1_Tex: The C-terminal S1 domain of a trans | 98.88 | |
| cd04465 | 67 | S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Rib | 98.86 | |
| cd05692 | 69 | S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal p | 98.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.85 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.84 | |
| cd05685 | 68 | S1_Tex S1_Tex: The C-terminal S1 domain of a trans | 98.83 | |
| cd04465 | 67 | S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Rib | 98.82 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| cd05789 | 86 | S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. | 98.8 | |
| TIGR02696 | 719 | pppGpp_PNP guanosine pentaphosphate synthetase I/p | 98.8 | |
| COG1093 | 269 | SUI2 Translation initiation factor 2, alpha subuni | 98.79 | |
| cd05688 | 68 | S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal p | 98.78 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.78 | |
| cd04472 | 68 | S1_PNPase S1_PNPase: Polynucleotide phosphorylase | 98.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.77 | |
| cd05684 | 79 | S1_DHX8_helicase S1_DHX8_helicase: The N-terminal | 98.77 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.76 | |
| cd04471 | 83 | S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domai | 98.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.75 | |
| PLN00207 | 891 | polyribonucleotide nucleotidyltransferase; Provisi | 98.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.74 | |
| cd04472 | 68 | S1_PNPase S1_PNPase: Polynucleotide phosphorylase | 98.74 | |
| PRK03987 | 262 | translation initiation factor IF-2 subunit alpha; | 98.73 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.73 | |
| smart00316 | 72 | S1 Ribosomal protein S1-like RNA-binding domain. | 98.72 | |
| smart00316 | 72 | S1 Ribosomal protein S1-like RNA-binding domain. | 98.72 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.71 | |
| COG2183 | 780 | Tex Transcriptional accessory protein [Transcripti | 98.7 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.7 | |
| cd04453 | 88 | S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-lik | 98.7 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.69 | |
| PHA02945 | 88 | interferon resistance protein; Provisional | 98.69 | |
| cd04473 | 77 | S1_RecJ_like S1_RecJ_like: The S1 domain of the ar | 98.68 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.68 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.68 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.67 | |
| cd05688 | 68 | S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal p | 98.67 | |
| COG2183 | 780 | Tex Transcriptional accessory protein [Transcripti | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.64 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.64 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.63 | |
| cd05789 | 86 | S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. | 98.63 | |
| PLN00207 | 891 | polyribonucleotide nucleotidyltransferase; Provisi | 98.62 | |
| PRK09521 | 189 | exosome complex RNA-binding protein Csl4; Provisio | 98.61 | |
| cd04454 | 82 | S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA- | 98.6 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.6 | |
| cd05702 | 70 | S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: R | 98.59 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 98.59 | |
| COG1185 | 692 | Pnp Polyribonucleotide nucleotidyltransferase (pol | 98.58 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.58 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.58 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| cd05702 | 70 | S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: R | 98.57 | |
| cd04453 | 88 | S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-lik | 98.57 | |
| cd04473 | 77 | S1_RecJ_like S1_RecJ_like: The S1 domain of the ar | 98.55 | |
| cd04471 | 83 | S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domai | 98.54 | |
| cd04454 | 82 | S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA- | 98.54 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.54 | |
| PRK11824 | 693 | polynucleotide phosphorylase/polyadenylase; Provis | 98.53 | |
| TIGR02696 | 719 | pppGpp_PNP guanosine pentaphosphate synthetase I/p | 98.53 | |
| PRK03987 | 262 | translation initiation factor IF-2 subunit alpha; | 98.5 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.5 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.49 | |
| COG1093 | 269 | SUI2 Translation initiation factor 2, alpha subuni | 98.48 | |
| cd00164 | 65 | S1_like S1_like: Ribosomal protein S1-like RNA-bin | 98.48 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.46 | |
| cd00164 | 65 | S1_like S1_like: Ribosomal protein S1-like RNA-bin | 98.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.44 | |
| cd04460 | 99 | S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. | 98.42 | |
| TIGR03591 | 684 | polynuc_phos polyribonucleotide nucleotidyltransfe | 98.39 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.39 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.37 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.35 | |
| PRK11824 | 693 | polynucleotide phosphorylase/polyadenylase; Provis | 98.34 | |
| PRK09521 | 189 | exosome complex RNA-binding protein Csl4; Provisio | 98.33 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.29 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.29 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 98.29 | |
| cd05699 | 72 | S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a t | 98.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.24 | |
| PRK04163 | 235 | exosome complex RNA-binding protein Rrp4; Provisio | 98.2 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.17 | |
| PRK09202 | 470 | nusA transcription elongation factor NusA; Validat | 98.17 | |
| TIGR03591 | 684 | polynuc_phos polyribonucleotide nucleotidyltransfe | 98.14 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.13 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.13 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.11 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.11 | |
| cd04460 | 99 | S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. | 98.11 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.1 | |
| PRK04163 | 235 | exosome complex RNA-binding protein Rrp4; Provisio | 98.09 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.08 | |
| cd04455 | 67 | S1_NusA S1_NusA: N-utilizing substance A protein ( | 98.07 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.07 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.06 | |
| cd04455 | 67 | S1_NusA S1_NusA: N-utilizing substance A protein ( | 98.05 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.04 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.04 | |
| TIGR00448 | 179 | rpoE DNA-directed RNA polymerase (rpoE), archaeal | 98.04 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.04 | |
| COG1185 | 692 | Pnp Polyribonucleotide nucleotidyltransferase (pol | 98.03 | |
| COG1095 | 183 | RPB7 DNA-directed RNA polymerase, subunit E' [Tran | 98.02 | |
| PRK09202 | 470 | nusA transcription elongation factor NusA; Validat | 97.99 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.98 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.98 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.97 | |
| TIGR02063 | 709 | RNase_R ribonuclease R. This family consists of an | 97.97 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.93 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.92 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.91 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.9 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.89 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.89 | |
| cd05791 | 92 | S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. | 97.88 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.87 | |
| PRK11642 | 813 | exoribonuclease R; Provisional | 97.86 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.8 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.79 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.79 | |
| TIGR00358 | 654 | 3_prime_RNase VacB and RNase II family 3'-5' exori | 97.75 | |
| cd05791 | 92 | S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. | 97.75 | |
| TIGR01953 | 341 | NusA transcription termination factor NusA. This m | 97.74 | |
| TIGR00448 | 179 | rpoE DNA-directed RNA polymerase (rpoE), archaeal | 97.74 | |
| PRK08563 | 187 | DNA-directed RNA polymerase subunit E'; Provisiona | 97.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.71 | |
| KOG1067 | 760 | consensus Predicted RNA-binding polyribonucleotide | 97.71 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.7 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.69 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.67 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.66 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.66 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.65 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.65 | |
| cd05701 | 69 | S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a | 97.65 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 97.64 | |
| TIGR01953 | 341 | NusA transcription termination factor NusA. This m | 97.63 | |
| KOG1067 | 760 | consensus Predicted RNA-binding polyribonucleotide | 97.62 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.62 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.59 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.59 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.57 | |
| TIGR02063 | 709 | RNase_R ribonuclease R. This family consists of an | 97.55 | |
| PRK12327 | 362 | nusA transcription elongation factor NusA; Provisi | 97.55 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.54 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.53 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.53 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.51 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.5 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.5 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.5 | |
| cd05700 | 65 | S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a t | 97.49 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.49 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.47 | |
| PHA02858 | 86 | EIF2a-like PKR inhibitor; Provisional | 97.47 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.45 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.43 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.42 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.41 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.4 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.39 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 97.39 | |
| PRK12327 | 362 | nusA transcription elongation factor NusA; Provisi | 97.39 | |
| COG1095 | 183 | RPB7 DNA-directed RNA polymerase, subunit E' [Tran | 97.38 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.37 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.37 | |
| PRK08563 | 187 | DNA-directed RNA polymerase subunit E'; Provisiona | 97.33 | |
| PRK11642 | 813 | exoribonuclease R; Provisional | 97.33 | |
| TIGR00358 | 654 | 3_prime_RNase VacB and RNase II family 3'-5' exori | 97.32 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.26 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.26 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.24 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.22 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.22 | |
| cd04462 | 88 | S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA poly | 97.19 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 97.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.11 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.1 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.06 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.03 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.01 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.99 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.95 | |
| PRK05054 | 644 | exoribonuclease II; Provisional | 96.87 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.83 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 96.82 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.82 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.8 | |
| PHA02858 | 86 | EIF2a-like PKR inhibitor; Provisional | 96.74 | |
| COG1096 | 188 | Predicted RNA-binding protein (consists of S1 doma | 96.72 | |
| cd04462 | 88 | S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA poly | 96.71 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 96.68 | |
| PF10447 | 82 | EXOSC1: Exosome component EXOSC1/CSL4; InterPro: I | 96.67 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.63 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.62 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.59 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 96.56 | |
| COG1097 | 239 | RRP4 RNA-binding protein Rrp4 and related proteins | 96.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.48 | |
| PTZ00162 | 176 | DNA-directed RNA polymerase II subunit 7; Provisio | 96.47 | |
| KOG2916 | 304 | consensus Translation initiation factor 2, alpha s | 96.44 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.38 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.35 | |
| PRK12328 | 374 | nusA transcription elongation factor NusA; Provisi | 96.32 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.3 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.28 | |
| cd05790 | 86 | S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domai | 96.21 | |
| KOG1856 | 1299 | consensus Transcription elongation factor SPT6 [RN | 96.13 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.12 | |
| COG0557 | 706 | VacB Exoribonuclease R [Transcription] | 96.11 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.08 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.04 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 96.01 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.01 | |
| TIGR02062 | 639 | RNase_B exoribonuclease II. This family consists o | 96.0 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 95.98 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.88 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.84 | |
| PRK05054 | 644 | exoribonuclease II; Provisional | 95.83 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.77 | |
| PTZ00162 | 176 | DNA-directed RNA polymerase II subunit 7; Provisio | 95.76 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 95.76 | |
| KOG1856 | 1299 | consensus Transcription elongation factor SPT6 [RN | 95.76 | |
| PRK12328 | 374 | nusA transcription elongation factor NusA; Provisi | 95.72 | |
| PF13509 | 61 | S1_2: S1 domain; PDB: 3GO5_A. | 95.71 | |
| TIGR00757 | 414 | RNaseEG ribonuclease, Rne/Rng family. The C-termin | 95.71 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 95.71 | |
| COG1097 | 239 | RRP4 RNA-binding protein Rrp4 and related proteins | 95.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.54 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 95.51 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.5 | |
| TIGR00757 | 414 | RNaseEG ribonuclease, Rne/Rng family. The C-termin | 95.49 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.48 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 95.48 | |
| KOG2916 | 304 | consensus Translation initiation factor 2, alpha s | 95.43 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.41 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.38 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.36 | |
| PF10447 | 82 | EXOSC1: Exosome component EXOSC1/CSL4; InterPro: I | 95.32 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 95.24 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.19 | |
| PF13509 | 61 | S1_2: S1 domain; PDB: 3GO5_A. | 95.16 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.13 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.02 | |
| cd05790 | 86 | S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domai | 94.98 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.96 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.87 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.85 | |
| COG1096 | 188 | Predicted RNA-binding protein (consists of S1 doma | 94.75 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 94.74 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.7 | |
| PRK12329 | 449 | nusA transcription elongation factor NusA; Provisi | 94.67 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.63 | |
| TIGR02062 | 639 | RNase_B exoribonuclease II. This family consists o | 94.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.51 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.42 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.14 | |
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 94.11 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.08 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.05 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.03 | |
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 93.99 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.77 | |
| COG0557 | 706 | VacB Exoribonuclease R [Transcription] | 93.77 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.54 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.52 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.47 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 93.4 | |
| PRK12329 | 449 | nusA transcription elongation factor NusA; Provisi | 93.31 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.29 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 93.25 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.24 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.2 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.17 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 93.03 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 92.98 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.86 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 92.31 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 92.17 | |
| PRK10811 | 1068 | rne ribonuclease E; Reviewed | 91.23 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.85 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 90.81 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 90.53 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 90.41 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 90.24 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 89.9 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 89.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 89.57 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.51 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.21 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.18 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 89.03 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 88.27 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.89 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.58 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.57 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 87.43 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 87.29 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.18 | |
| KOG3298 | 170 | consensus DNA-directed RNA polymerase subunit E' [ | 87.11 | |
| PRK11712 | 489 | ribonuclease G; Provisional | 86.84 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 86.79 | |
| PRK10811 | 1068 | rne ribonuclease E; Reviewed | 86.27 | |
| PRK11712 | 489 | ribonuclease G; Provisional | 86.09 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.08 | |
| PF10246 | 104 | MRP-S35: Mitochondrial ribosomal protein MRP-S35; | 86.03 | |
| PF08292 | 122 | RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; I | 85.97 | |
| KOG3409 | 193 | consensus Exosomal 3'-5' exoribonuclease complex, | 85.66 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.47 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.24 | |
| KOG3298 | 170 | consensus DNA-directed RNA polymerase subunit E' [ | 84.48 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.46 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.77 | |
| PF08292 | 122 | RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; I | 83.66 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 83.6 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 83.37 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 83.13 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 83.06 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.66 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 82.61 | |
| KOG3409 | 193 | consensus Exosomal 3'-5' exoribonuclease complex, | 82.38 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 82.18 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 81.66 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 81.66 | |
| PRK12442 | 87 | translation initiation factor IF-1; Reviewed | 81.44 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.3 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 80.45 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 80.43 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 80.04 |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-200 Score=1852.26 Aligned_cols=1624 Identities=37% Similarity=0.562 Sum_probs=1309.0
Q ss_pred cCCCCCCCCCcCCCCCCCCCCchhhhhhhhc--cccccccccccc---c--cccccccccccccccCCcCccCCccCCCc
Q 000173 43 LALPPDDDVPVFPRGGGHSLTQRERDEIHAE--VDAEFEAVERGL---H--KKNKKKKKKTERKANETVDDLGSLFGDGI 115 (1935)
Q Consensus 43 ~~~~~~~~e~~fprgg~~~lt~~e~~~~~~~--~d~lf~~~~~~~---~--k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1935)
..+..++++++|||||+|.|||+|+++...| .|.+|+....+. . ++++..++..++-. ..++.+.
T Consensus 27 ~~l~~~t~~~~fprgg~s~lt~~e~~kv~~E~~~e~l~~~~~vke~~~~~~~~~k~vk~~~s~~s--------~~~~~~~ 98 (1710)
T KOG1070|consen 27 SSLKRKTAAPDFPRGGASKLTPLEIEKVEEEAFIEGLTGFGVVKEVFDDGRPKKKTVKKSASKVS--------KKFTENF 98 (1710)
T ss_pred ccccccccccccccccccccChHHHHHHHHHHHhhhhhcccceecccCCCCccccccccchhhHH--------Hhhhccc
Confidence 3446678899999999999999999999444 555555321110 1 11111111111100 0111111
Q ss_pred CCCCCceeeccccCCcCcCcEEEEEEEEEecccEEEEcCCCcEEEEeccccCchhhcccccccccCCCCCcccCCCEEEE
Q 000173 116 SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSC 195 (1935)
Q Consensus 116 ~~~~~~~~e~l~~k~l~~G~~~lG~V~~i~~~~l~vslp~~l~G~v~~~~is~~~~~~~~~~~~~~~l~~~f~~Gq~v~~ 195 (1935)
....+..++++++|+++|||+|||+|++|+..|+.+|+|++|+|||+.++||+.+
T Consensus 99 ~~~k~~~~~~~~~k~isPG~~llgvIs~i~~~Dl~isv~~~l~g~v~~t~lS~~~------------------------- 153 (1710)
T KOG1070|consen 99 NEEKPEIINAFQLKNISPGMLLLGVISKINGNDLKISVKGGLNGYVLNTHLSDEM------------------------- 153 (1710)
T ss_pred cccchhhhhhccccccCCcceeeeeeeeccccceeEEccCcccccccccccCHhH-------------------------
Confidence 1112556899999999999999999999999999999999999999999999882
Q ss_pred EEEEeecCccccceeEEEEeechhhhhcCCCcccccCCcEEEEEEEeeecceEEEEecCCcceecccCCCCCCCCCCcCC
Q 000173 196 IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK 275 (1935)
Q Consensus 196 ~V~~~~~~~~~~~~~~i~LS~~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~ 275 (1935)
+.+|+.|.+.|.|+||||+++|+|++..+||+...++++ .+..|+
T Consensus 154 ----------------------------------~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~~q~pn-~~~~lK 198 (1710)
T KOG1070|consen 154 ----------------------------------LAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEKSQFPN-LGAKLK 198 (1710)
T ss_pred ----------------------------------hhhhhhhccccccccccccchhcCCccccchhhhccCch-hhhhcc
Confidence 235788999999999999999999999999999999763 233799
Q ss_pred CCcEEEEEEEEEcCCCcEEEEccCccccccccccccccccccccCCCceEEEEEEEEecCeEEEEeCCceEEEEeccccc
Q 000173 276 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355 (1935)
Q Consensus 276 ~G~~~~~~v~~~~~~~~~v~ls~~~~~~~~~~~~~~~~~s~~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~G~v~~~~l~ 355 (1935)
+||+++|+|++++. +.+++|..+..+....+++.++++++.|+|||+|+|.|++|++||+.++|+++|+|+++..||.
T Consensus 199 vGq~l~~~V~k~~s--~~v~ks~~~~~~~t~~~t~~~~~~~~~LvpGt~vqa~V~sv~~~Gi~~dil~~ftG~l~~~hl~ 276 (1710)
T KOG1070|consen 199 VGQWLRVSVTKSTS--ERVVKSTKFVEVLTLNPTSCNGLALNDLVPGTMVQAEVQSVEDHGITLDILNGFTGFLDKKHLP 276 (1710)
T ss_pred cCceEEEEEEeccC--ceEEecccceeeecccchhccccchhhcCCcceEEEEecceecCcEEEEecccccceeehhhCC
Confidence 99999999999875 4888999999888888888899999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeChhhccCCCCCCCCCCCCeEEeEEEEEEECCcceEEEcCCCCCc
Q 000173 356 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435 (1935)
Q Consensus 356 ~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~p~~~~~~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~l~~~~~~ 435 (1935)
+++ .|..|+...|.|+. +..+ ...++.++.+....+... |+..-+++.
T Consensus 277 ~~~-------~~~~~~~~l~~vi~--~s~R-------------------v~~~~f~~ka~ki~~l~~-~v~ai~p~~--- 324 (1710)
T KOG1070|consen 277 PFL-------RYFENQEKLGKVIH--KSDR-------------------VFVVDFFDKASKILVLKA-GVDAIAPSR--- 324 (1710)
T ss_pred chh-------hccccHHHhhcccc--hhhh-------------------eeeechhhccceEEEecC-ccceEccCC---
Confidence 764 48889888888643 2211 223444444444444443 555444421
Q ss_pred cceEeeccccchHHHHhhhccccCCCEEEEEEEEEEecCCeEEEEechhhccccccccccCCCCCEEEEEEEEEecCceE
Q 000173 436 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515 (1935)
Q Consensus 436 v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~k~~~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~ 515 (1935)
.+. +-. ...++.|..++|||+.+..+|.++..+++.+.++.+++++.++.||.++.+.| ++.++
T Consensus 325 --------~~~---~~~-~e~~k~G~~~K~~vi~~~~~~~~~~~tl~~s~ie~k~~~~s~V~~r~l~~~~~-svdt~--- 388 (1710)
T KOG1070|consen 325 --------IEK---VLS-FEIFKIGNKVKCRVIDVLQMDSLALFTLKESAIEGKFSLVSDVSPRGLLKKPV-SVDTE--- 388 (1710)
T ss_pred --------ccc---ccc-hhhcccCceEEEEEEEEeeccceEEeecchhhccCceEEEeccCCceEEEecc-cCChh---
Confidence 111 011 12489999999999999999999999999999999999999999999999998 77665
Q ss_pred EEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEEeCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEE
Q 000173 516 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595 (1935)
Q Consensus 516 V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~ 595 (1935)
..|++|+.|++.+...+|+.+|..|..|.||||.+..+++.+|+| .|..++.|.++.|.++.+ .++|++.+
T Consensus 389 ------~~~l~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~-v~~~sK~pvis~y~~~~~--~t~~~l~~ 459 (1710)
T KOG1070|consen 389 ------EVGLSPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLK-VLCVSKLPVISMYADAVK--LTHGMLSK 459 (1710)
T ss_pred ------hhhccccchhhceeecCCCcccccccceeeEEeeccceeeeeeee-eeEeecCcceEEEeeccc--cCcchhhc
Confidence 679999999999999999999999999999999999999999999 999999999999988876 77888877
Q ss_pred EecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCCC--CCccccccCCCCeE
Q 000173 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLV 673 (1935)
Q Consensus 596 i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~~--~~~~~~~~~~G~iv 673 (1935)
+. .|++|+-++ |..+.+||++|-+.++-+.||+.++.. ......++++|++|
T Consensus 460 v~------------q~~v~~~e~--------------~te~~~rv~~v~~v~~v~~v~~~~svl~lk~~~~nDI~iG~~V 513 (1710)
T KOG1070|consen 460 VP------------QGMVPIYEV--------------GTEVKSRVWQVFYVGKVVIVSVRESVLGLKFLRVNDIEIGQLV 513 (1710)
T ss_pred cc------------cCCCCceec--------------CCcccCccceecccCcEEEEEEehHhhccccccccccccccee
Confidence 76 566665444 455555555555555555555544321 23345679999999
Q ss_pred EEEEEEEecCcEEEEEEecCceeEEEeccccCCcccccccccccccCCCeEeeEEEeecCCCeEEEeccchhcchhccCC
Q 000173 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP 753 (1935)
Q Consensus 674 ~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~~vl~~d~~~~~i~ls~K~~l~~~~~~~~ 753 (1935)
+|+|.++++.|+.|.+. .+++.|+||..||+|++.+.++...++..|.++ |+|+++.+.+++.||+|++|++...++|
T Consensus 514 ~~~I~~vt~~Gv~v~v~-~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~-RVl~~~~~~~~v~l~~K~slv~~~~plp 591 (1710)
T KOG1070|consen 514 PGVIRKVTPQGVEVLVT-FGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKL-RVLSVNRDRNRVALTLKKSLVNTQLPLP 591 (1710)
T ss_pred eeEEEEecCCcEEEEEe-cCceeeecChHhhhhcccccccceeeeccccEE-EEEEEEccCCeeEEEechhhhcccCCCc
Confidence 99999999999999995 367999999999999999999998888899998 8999999999999999999999988999
Q ss_pred ccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000173 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1935)
Q Consensus 754 ~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~ 833 (1935)
.+|+++++|++++|+|+++.++||||+|+||++||+|.++|++.++.+++++|.+||||.|+|+++|++++|+.|+++.+
T Consensus 592 ~d~~~~~pg~~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~l~~r~s 671 (1710)
T KOG1070|consen 592 SDFEQAIPGKITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRMPLGLRAS 671 (1710)
T ss_pred cchhhcCCCceEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhceeehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEEEEEEEEeecceeEEEeccCCceeEEEeeeecCCc-
Q 000173 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA- 912 (1935)
Q Consensus 834 ~~~~~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~~~~~g~~v~~~~~~~v~g~i~~~~ls~~- 912 (1935)
.|+.++..+..++| ..|.+..+.+.+.+.+.++|++.+. ++.|++...||.|+
T Consensus 672 ~~~~a~~~~~~e~~-------------------------~~g~v~s~~~~~~tkd~viVei~~~-~~~~v~~~~~L~dg~ 725 (1710)
T KOG1070|consen 672 SCARACVKRSVENF-------------------------VKGGVKSLKSIDKTKDSVIVEIVDQ-GITGVGVFGELVDGS 725 (1710)
T ss_pred hhHHHHHHHHHHHh-------------------------hccccccceeehhccccEEEEccCc-ceEEEEEEEEEccCc
Confidence 88544443333333 3445555555555555566666553 56666666666652
Q ss_pred ------------------cccCCCeEEEEEEEeeccccEEEEeehhhhhhhhhhcchhhHHhHhhhhhccccccCCcceE
Q 000173 913 ------------------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974 (1935)
Q Consensus 913 ------------------~~~~G~~v~~~vl~~~~~~~~v~ls~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v 974 (1935)
.+.+|+.+.++|++++..++.|.+++++.|...+ .++..|...
T Consensus 726 v~~~~~~~~kl~~~t~~~~lv~gq~~~~~i~~isl~k~lv~~s~~~~L~~~~-------------------~~l~k~~~~ 786 (1710)
T KOG1070|consen 726 VVVNKVLENKLRKNTSLLHLVVGQVTVGVILSISLKKSLVLISLCTDLPNNA-------------------TKLLKGSYA 786 (1710)
T ss_pred eEEccchhhhhhhcchhheeeecceeEEEEEEeehhhhhhhccccccccchH-------------------HHHhcCchh
Confidence 2688999999999999999999998888876553 346778888
Q ss_pred EEEEEEEeeeeEEEeecCCcceEEEeeeecCC-CCCCCcccccCCCeEEEEEeccCCCCcccchhhhhhh----------
Q 000173 975 NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA---------- 1043 (1935)
Q Consensus 975 ~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~l~L~~~~---------- 1043 (1935)
.|+|++|..++.|++|. ++++++++.+|.+ ....+......||++.+....++. ...+ ..+....
T Consensus 787 ~~~v~~is~~~~~~a~~--~~~i~~v~~s~~v~s~~~d~~~~~y~Q~v~~~~~st~~-~~~~-~~~a~e~p~~K~~~~~~ 862 (1710)
T KOG1070|consen 787 LALVRSISKEGKFVAFV--SNLIALVKVSHLVDSELDDLTKAEYGQSVTVKLLSTEP-KVVK-DLKAVEKPKKKKEKKFI 862 (1710)
T ss_pred HHHHHhhhhheeheeec--ccccceeeccccccccccccceeeeecccceEEEecCh-hHHH-HHHhhcchhhccceeEE
Confidence 89999999999999995 5699999999986 555566777788999999988762 1111 1111110
Q ss_pred --cc-ccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEeeeccCCccchhhccccCCCCCCEEEEE
Q 000173 1044 --IS-ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120 (1935)
Q Consensus 1044 --~~-~~~~~~~~~~~~~~~~~~G~~v~~~V~~vk~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~p~~~~~~G~~v~~~ 1120 (1935)
.. ..+-....+.++.+++.+|.++.|+|++|+++|++|.|+.+.+||||++|++|+..++.. |+++|++|+.|.||
T Consensus 863 ~~~~~~~d~~Vd~a~k~~~~~~igsiv~a~v~svKp~~L~v~l~~~~~gri~isev~d~~~eitD-p~~k~~vG~~I~vr 941 (1710)
T KOG1070|consen 863 KVSSNDSDNEVDLAIKSTEDLSIGSIVRAYVKSVKPDQLNVLLAANHHGRIHISEVLDNLHEITD-PLDKFKVGDGIFVR 941 (1710)
T ss_pred EeccccCCCccccccccccceeeeeEEEEEEeeecccceEEeccccccCceehHHhhccccccCC-hhhhcccCCeEEEE
Confidence 00 001111224567889999999999999999999999999999999999999999877544 99999999999999
Q ss_pred EEeee-cC-----CCCCCcceEEEEeccccccccccCCccccccccCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEcc
Q 000173 1121 IIAKS-NK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194 (1935)
Q Consensus 1121 Vl~~~-~~-----~~~~~~~~~elS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~ 1194 (1935)
|+|.| .+ ....+..++|||+||+.++.... ...+. .+++.||.|+|||+++..+|+|+.++|.++||||++
T Consensus 942 viG~~D~k~lpith~i~k~~v~ElSvkps~les~~~-~t~s~--~q~~~gq~vtGfV~nv~ke~~w~~isp~v~~RIpll 1018 (1710)
T KOG1070|consen 942 VIGGHDVKDLPITHLISKEQVLELSVKPSELESDEF-NTTST--KQFKAGQEVTGFVNNVSKEWLWVRISPFVDGRIPLL 1018 (1710)
T ss_pred EEcCCccccCccccccchhhhhhhccChhhhccccc-cccch--hhhhcCCeEEEEEEccccceeEEEccccccceeeee
Confidence 99996 11 12234689999999999984431 11112 257999999999999999999999999999999999
Q ss_pred ccCCCCcchhhccccCCCCCEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEEcCc
Q 000173 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274 (1935)
Q Consensus 1195 ~~s~~~~~~~~~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~ 1274 (1935)
+++.+...+++|+..|++|++++++|+..+..+-...++.... .... .+|+++.|+|+++.++
T Consensus 1019 d~s~~~~~le~~e~~F~~g~al~~~V~~~~~~~tv~~iG~~~~-----------~k~~-----s~G~~l~Grv~kv~~~- 1081 (1710)
T KOG1070|consen 1019 DTSLDLHVLELPESLFPLGKALDEYVVRNDKSKTVRAIGFSKS-----------DKNP-----SPGDILFGRVSKVLPG- 1081 (1710)
T ss_pred eccchhhhhhCchhhcccccceeeEEecccceeEEEecccccC-----------CCCC-----Ccchhhcceeeeeccc-
Confidence 9999999999999999999999999999873222222222111 1111 1899999999999998
Q ss_pred CeEEEEeCCceEEEEecc-cccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCceEEEEeecccccCCCC
Q 000173 1275 GGLVVQIGPHLYGRVHFT-ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1353 (1935)
Q Consensus 1275 ~g~~V~l~~~~~G~v~~t-el~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~~i~lSlr~s~~~~~~ 1353 (1935)
++.++++++..|+++.+ +++|+|... |...|..++.+.|++|.++.. ++.++||+|.++..+..
T Consensus 1082 -~~~l~~~~~~~G~~~~i~~~~d~~~~~-----------P~~~f~~~~~v~~~~L~vs~~---n~~leLslr~sr~~~t~ 1146 (1710)
T KOG1070|consen 1082 -YLILQLPFKVFGRVSFIEDMSDSYSMT-----------PVEHFTKIQIVYVCVLSVSAL---NKGLELSLRESRTKITP 1146 (1710)
T ss_pred -eeEEecCCccccceEEeeehhccccCC-----------hHHhcccccEEEEEEEEEecc---cccceeecccccccCcc
Confidence 89999999999988755 999999887 999999999999999999986 34499999999843322
Q ss_pred CCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEE
Q 000173 1354 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433 (1935)
Q Consensus 1354 ~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kV 1433 (1935)
....++.+.+++++++|++++|||+++.++|+|+.|++++.|+++++++++.|.+.|++.|++|++|.++|
T Consensus 1147 ---------~~~kd~~iks~eDlk~g~iv~G~V~nv~~~glfi~ls~~v~a~v~is~~~ds~~k~w~k~~~~gklv~~rv 1217 (1710)
T KOG1070|consen 1147 ---------VDSKDGSIKSIEDLKIGDIVRGFVKNVETKGLFIALSRKVEAFVPISGLSDSFEKEWEKHLPVGKLVTGRV 1217 (1710)
T ss_pred ---------ccccCCcccchhhcccCceeEEEEEEecCCcEEEEEccceEEEEEccccccchhhhhhccCCccceeeeEE
Confidence 23467889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecC-ceeEEeeccccCcccccCccc
Q 000173 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIET 1512 (1935)
Q Consensus 1434 l~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~-~v~Gl~h~sels~~~~~~~~~ 1512 (1935)
+++++..+|++|+|+++....... ......++++|+...|+|.++.+||+||+++++ ++.|+||++++++.+.++...
T Consensus 1218 ~~ve~~s~riel~Lk~s~~~d~~~-~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~~~e~~d~~~e~it~ 1296 (1710)
T KOG1070|consen 1218 LSVEEDSKRIELSLKNSDIKDTVK-LLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCHISEEADDRGENITA 1296 (1710)
T ss_pred EEeeccCceEEEEEeccccCCchh-hhhhhhhhhccccccceEEEecCCceEEEecCcceecccccceeecchhhhhccc
Confidence 999999999999999988753222 344578999999999999999999999999986 579999999999999999999
Q ss_pred ccCCCCEEEEEEEEEecCCCeeEEeccccccCCCcccccCCccchhhHHHHhhcccCcccccccCccccccccccccCCC
Q 000173 1513 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1592 (1935)
Q Consensus 1513 ~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1592 (1935)
.|..|++|+|.+++++.+++||++++|.+|+..+++....+..++.-+ .+.+..+.....+...-+|.+ .+.+...
T Consensus 1297 ~~~~~~~V~a~~lk~~~ek~rIsl~~k~s~~~~~dd~~~~~~~~e~v~--~~~~~~~d~~s~~~~~~~d~g--~q~~~~g 1372 (1710)
T KOG1070|consen 1297 LYYAGDRVKACVLKEDSEKKRISLGLKSSYLSSEDDARITSYGEEGVE--MEEESHSDPKSMEEVAAEDPG--FQSSSGG 1372 (1710)
T ss_pred ceeccceeeeEeeeccchhhhhhhhhhhhccCChhhhhcccccccCcc--hhcccccCccchhhhcccCCC--ccccccc
Confidence 999999999999999999999999999999966432221100000000 000000000000000000000 0000000
Q ss_pred cc-cccccccccCCCCc-cc-cCCCCCCCcCcCCC-CCCCCcchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhccCC
Q 000173 1593 SL-VLAQIESRASVPPL-EV-NLDDEQPDMDNGIS-QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA 1668 (1935)
Q Consensus 1593 ~~-~~~~~~~~~~~~~l-~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~e~~~~~~e~~~~~~~~ 1668 (1935)
.. ....++.....+++ +- .|++++.|+.-++. .++|+.+ ++++.++++.|.....+++.++. +.
T Consensus 1373 ~~~e~~~d~~~~~~p~~le~s~~td~e~d~~~~~~e~~qde~d-----------ee~e~~kee~e~~~~~~e~~dl~-~~ 1440 (1710)
T KOG1070|consen 1373 FNLEDAVDEMSETLPDALEDSCETDSEVDEEVEDEELDQDEKD-----------EEKEKDKEEREENRSDEEERDLS-RA 1440 (1710)
T ss_pred eehhhhhhhccccCCchhhhcccchhhhhhccccccccccccc-----------hhhhhhhhhccccccchhhcccc-cC
Confidence 00 00001111111222 11 25554433211111 1111111 11112222334455556666655 79
Q ss_pred CCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000173 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1748 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~ 1748 (1935)
|++.+||+|+++.+||++.+|++||+|+++.+++++||++++|||.+|++||+.|++|+|+||+|||+.|| +.+++.+
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKK 1518 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 7899999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1749 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1749 vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
+|+|||+||++..+|.+|+.+|.+.+++++|.++|+.|+++|.+..++|+.|++|++++ +.++|+.+++|||+++|.++
T Consensus 1519 VFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1519 VFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
|+++..+||+++|++||+||||++||..|..||+|.|+|+.|+++++++|+.+.+|.+|||++++++++++|+++|++|+
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000173 1908 EYEKSVGEEERIEYVKQKAMEYVESTL 1934 (1935)
Q Consensus 1908 ~~E~~~G~~e~a~~v~~rAle~v~~~~ 1934 (1935)
+||+++||.+.++.|++||++||++..
T Consensus 1679 eyEk~~Gde~~vE~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKARAKEYVESIK 1705 (1710)
T ss_pred HHHHhcCchhhHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999853
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-106 Score=1011.25 Aligned_cols=1471 Identities=21% Similarity=0.247 Sum_probs=1091.3
Q ss_pred eeeccccCCcCcCcEEEEEEEEEecccEEEEcC-CCcEEEEeccccCchhhcccccccccCCCCCcccCCCEEEEEEEEe
Q 000173 122 YANKITLKNISAGMKLWGVVAEVNEKDLVICLP-GGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQL 200 (1935)
Q Consensus 122 ~~e~l~~k~l~~G~~~lG~V~~i~~~~l~vslp-~~l~G~v~~~~is~~~~~~~~~~~~~~~l~~~f~~Gq~v~~~V~~~ 200 (1935)
...|||-..+.+||.+-+.|.++.+++-++... ..++|++-. |+ ...+..+|++||||||.|++.
T Consensus 145 ~~t~lS~~~~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~---~q-----------~pn~~~~lKvGq~l~~~V~k~ 210 (1710)
T KOG1070|consen 145 LNTHLSDEMLAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEK---SQ-----------FPNLGAKLKVGQWLRVSVTKS 210 (1710)
T ss_pred cccccCHhHhhhhhhhccccccccccccchhcCCccccchhhh---cc-----------CchhhhhcccCceEEEEEEec
Confidence 457899999999999999999999999998873 112222211 11 235678999999999999987
Q ss_pred ecCc-cccceeEEEEeechhhhhcCCCcccccCCcEEEEEEEeeecceEEEEecCCcceecccCCCCCCCCCCcCCCCcE
Q 000173 201 DDDK-KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL 279 (1935)
Q Consensus 201 ~~~~-~~~~~~~i~LS~~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~~ 279 (1935)
.... ....++++++++.|...| +|..++|.|||+++|.|+||+|||+++|| +.+++|||+++++++.. .+.+||.
T Consensus 211 ~s~~v~ks~~~~~~~t~~~t~~~-~~~~~~LvpGt~vqa~V~sv~~~Gi~~di-l~~ftG~l~~~hl~~~~--~~~~~~~ 286 (1710)
T KOG1070|consen 211 TSERVVKSTKFVEVLTLNPTSCN-GLALNDLVPGTMVQAEVQSVEDHGITLDI-LNGFTGFLDKKHLPPFL--RYFENQE 286 (1710)
T ss_pred cCceEEecccceeeecccchhcc-ccchhhcCCcceEEEEecceecCcEEEEe-cccccceeehhhCCchh--hccccHH
Confidence 6521 111378999999999999 89999999999999999999999999999 79999999999998665 6889999
Q ss_pred EEEEEEEEcCCCcEEEEccCccccccccccccccccccccCCCceEEEEEEEEecCeEEEEeCCceEEEEecccccCCCC
Q 000173 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359 (1935)
Q Consensus 280 ~~~~v~~~~~~~~~v~ls~~~~~~~~~~~~~~~~~s~~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~G~v~~~~l~~~~~ 359 (1935)
++|.|+..+ .|++.+.... -+++... -..+++++.||..++..+..+...|..++..+--.+..+..|+.....
T Consensus 287 ~l~~vi~~s--~Rv~~~~f~~--ka~ki~~--l~~~v~ai~p~~~~~~~~~e~~k~G~~~K~~vi~~~~~~~~~~~tl~~ 360 (1710)
T KOG1070|consen 287 KLGKVIHKS--DRVFVVDFFD--KASKILV--LKAGVDAIAPSRIEKVLSFEIFKIGNKVKCRVIDVLQMDSLALFTLKE 360 (1710)
T ss_pred Hhhcccchh--hheeeechhh--ccceEEE--ecCccceEccCCcccccchhhcccCceEEEEEEEEeeccceEEeecch
Confidence 999987644 6777665521 1111111 134688999999999999999999999999887888888889886543
Q ss_pred CCCccccCCCCCEEEEEEEEEeC---CCceEEEeeChhhccCCC--C----CCCCCCCCeEEeEEEEEEECCcceEEEcC
Q 000173 360 TTNWKNDYNQHKKVNARILFVDP---TSRAVGLTLNPYLLHNRA--P----PSHVKVGDIYDQSKVVRVDRGLGLLLDIP 430 (1935)
Q Consensus 360 ~~~~~~~~~~G~~v~arVl~~~~---~~~~v~LSl~p~~~~~~~--~----~~~~~~G~iv~~~~V~~v~~~~G~~v~l~ 430 (1935)
.+++.+|..+.-|++|++..-| ++-.++++-+||+..+.. | .....+|..+-.|.+...+-.+++++...
T Consensus 361 -s~ie~k~~~~s~V~~r~l~~~~~svdt~~~~l~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~v~~~sK 439 (1710)
T KOG1070|consen 361 -SAIEGKFSLVSDVSPRGLLKKPVSVDTEEVGLSPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLKVLCVSK 439 (1710)
T ss_pred -hhccCceEEEeccCCceEEEecccCChhhhhccccchhhceeecCCCcccccccceeeEEeeccceeeeeeeeeeEeec
Confidence 5788999999999999998877 234899999999987643 2 24677777777787777766666666665
Q ss_pred CCCCccceEeeccccchHHHHhhh----ccccCCCEEEEEEEEEEecCCeEEEEechhhccccccccccCCCCCEEEEEE
Q 000173 431 STPVSTPAYVTISDVAEEEVRKLE----KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506 (1935)
Q Consensus 431 ~~~~~v~gfv~~s~~~~~~~~~~~----~~~~vG~~~~~rV~~~~~~d~~~~~s~k~~~~~~~~~~~~~l~~G~~v~g~V 506 (1935)
. +.+.+|++...+.+..+.... ..|++|+++.|||.+|.+.+..++|++.++++..++++.+||+.|++|.|+|
T Consensus 440 ~--pvis~y~~~~~~t~~~l~~v~q~~v~~~e~~te~~~rv~~v~~v~~v~~v~~~~svl~lk~~~~nDI~iG~~V~~~I 517 (1710)
T KOG1070|consen 440 L--PVISMYADAVKLTHGMLSKVPQGMVPIYEVGTEVKSRVWQVFYVGKVVIVSVRESVLGLKFLRVNDIEIGQLVPGVI 517 (1710)
T ss_pred C--cceEEEeeccccCcchhhccccCCCCceecCCcccCccceecccCcEEEEEEehHhhcccccccccccccceeeeEE
Confidence 4 345899999887776665542 3599999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEEeCCC-eEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEecccccchhhHHhhhhhc
Q 000173 507 IAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEA 583 (1935)
Q Consensus 507 ~~v~~~G~~V~l~~~-v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~~i~ltlK~~l~~~~~~~~~~~~~~ 583 (1935)
.++++.|+.|.+..+ |.|++|..|++|.+...|...|++|..+++|||.+ +.+++.||+|++|++...|.+.+|+++
T Consensus 518 ~~vt~~Gv~v~v~~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~RVl~~~~~~~~v~l~~K~slv~~~~plp~d~~~~ 597 (1710)
T KOG1070|consen 518 RKVTPQGVEVLVTFGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKLRVLSVNRDRNRVALTLKKSLVNTQLPLPSDFEQA 597 (1710)
T ss_pred EEecCCcEEEEEecCceeeecChHhhhhcccccccceeeeccccEEEEEEEEccCCeeEEEechhhhcccCCCccchhhc
Confidence 999999999998765 99999999999999999999999999999999999 589999999999999999999999999
Q ss_pred CCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCCCCCc-
Q 000173 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS- 662 (1935)
Q Consensus 584 ~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~~~~~- 662 (1935)
+||++++|+|..+.++||||+|+||++||+|.++|+..++.+++++|++||+|.+.|+++|++++||.+||+.+.+...
T Consensus 598 ~pg~~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~l~~r~s~~~~a~ 677 (1710)
T KOG1070|consen 598 IPGKITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRMPLGLRASSCARAC 677 (1710)
T ss_pred CCCceEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhceeehhhhhhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876321
Q ss_pred ---cccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCc-ccccccccccccCCCeEeeEEEeecCCC--e
Q 000173 663 ---EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESS--N 736 (1935)
Q Consensus 663 ---~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~-~~~~~~~~~~~k~G~~l~~vl~~d~~~~--~ 736 (1935)
..+.+..|.+..+.+...+.+.+.|++. ..++.|++-..||.|. ...+..+.++++.+...-. |+++...+ -
T Consensus 678 ~~~~~e~~~~g~v~s~~~~~~tkd~viVei~-~~~~~~v~~~~~L~dg~v~~~~~~~~kl~~~t~~~~-lv~gq~~~~~i 755 (1710)
T KOG1070|consen 678 VKRSVENFVKGGVKSLKSIDKTKDSVIVEIV-DQGITGVGVFGELVDGSVVVNKVLENKLRKNTSLLH-LVVGQVTVGVI 755 (1710)
T ss_pred HHHHHHHhhccccccceeehhccccEEEEcc-CcceEEEEEEEEEccCceEEccchhhhhhhcchhhe-eeecceeEEEE
Confidence 3366778988889999999999999993 2479999999999993 3344444444443333332 23332222 1
Q ss_pred EEEeccchhcchhc--cCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEE
Q 000173 737 LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814 (1935)
Q Consensus 737 i~ls~K~~l~~~~~--~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~ 814 (1935)
+.+++|++++..+. .+|....++..|...+++|.+|...|.|+.|.+++.++++.+++.+....+....++ ||.|.|
T Consensus 756 ~~isl~k~lv~~s~~~~L~~~~~~l~k~~~~~~~v~~is~~~~~~a~~~~~i~~v~~s~~v~s~~~d~~~~~y-~Q~v~~ 834 (1710)
T KOG1070|consen 756 LSISLKKSLVLISLCTDLPNNATKLLKGSYALALVRSISKEGKFVAFVSNLIALVKVSHLVDSELDDLTKAEY-GQSVTV 834 (1710)
T ss_pred EEeehhhhhhhccccccccchHHHHhcCchhHHHHHhhhhheeheeecccccceeeccccccccccccceeee-ecccce
Confidence 45556666655443 366666778889999999999999999999999999999999988776666555444 499999
Q ss_pred EEEEeeCCCCeEEEeecccccCCCCchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEEEEEEEEeecceeEEEe
Q 000173 815 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894 (1935)
Q Consensus 815 ~V~~vd~e~~rl~LSlk~~~~~~~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~~~~~g~~v~~ 894 (1935)
++.++++......++++.......-. + .. ...--..+|-....+..+++.+|++|.++|++++++++.|.+
T Consensus 835 ~~~st~~~~~~~~~a~e~p~~K~~~~-~----~~----~~~~~~d~~Vd~a~k~~~~~~igsiv~a~v~svKp~~L~v~l 905 (1710)
T KOG1070|consen 835 KLLSTEPKVVKDLKAVEKPKKKKEKK-F----IK----VSSNDSDNEVDLAIKSTEDLSIGSIVRAYVKSVKPDQLNVLL 905 (1710)
T ss_pred EEEecChhHHHHHHhhcchhhcccee-E----EE----eccccCCCccccccccccceeeeeEEEEEEeeecccceEEec
Confidence 99999998888888877664321000 0 00 000000011111122247899999999999999999999999
Q ss_pred ccCCceeEEEeeeecCC---------ccccCCCeEEEEEEEe-----------eccccEEEEeehhhhhhhhhhcchhhH
Q 000173 895 EEHSDVYGFITHHQLAG---------ATVESGSVIQAAILDV-----------AKAERLVDLSLKTVFIDRFREANSNRQ 954 (1935)
Q Consensus 895 ~~~~~v~g~i~~~~ls~---------~~~~~G~~v~~~vl~~-----------~~~~~~v~ls~k~~l~~~~~~~~~~~~ 954 (1935)
.. ++.|.||.+|+-+ ..+++|+.|.++|+.. -..++..+||+||+.++. .++..
T Consensus 906 ~~--~~~gri~isev~d~~~eitDp~~k~~vG~~I~vrviG~~D~k~lpith~i~k~~v~ElSvkps~les-~~~~t--- 979 (1710)
T KOG1070|consen 906 AA--NHHGRIHISEVLDNLHEITDPLDKFKVGDGIFVRVIGGHDVKDLPITHLISKEQVLELSVKPSELES-DEFNT--- 979 (1710)
T ss_pred cc--cccCceehHHhhccccccCChhhhcccCCeEEEEEEcCCccccCccccccchhhhhhhccChhhhcc-ccccc---
Confidence 87 5889998888765 2799999999999875 124566899999999883 22221
Q ss_pred HhHhhhhhccccccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeccCCCCcc
Q 000173 955 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 1034 (1935)
Q Consensus 955 ~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~~~~~~ 1034 (1935)
.+..+++.|++|+|+|.++..+|+++++. .-+.|++|+.+...
T Consensus 980 --------~s~~q~~~gq~vtGfV~nv~ke~~w~~is--p~v~~RIplld~s~--------------------------- 1022 (1710)
T KOG1070|consen 980 --------TSTKQFKAGQEVTGFVNNVSKEWLWVRIS--PFVDGRIPLLDTSL--------------------------- 1022 (1710)
T ss_pred --------cchhhhhcCCeEEEEEEccccceeEEEcc--ccccceeeeeeccc---------------------------
Confidence 13367899999999999999999999983 33334444322210
Q ss_pred cchhhhhhhccccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEeeeccCCccchhhccccCCCCC
Q 000173 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 1114 (1935)
Q Consensus 1035 ~~l~L~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~vk~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~p~~~~~~G 1114 (1935)
+.|.+ ++|-+.|..|
T Consensus 1023 -------------------------------------------------------~~~~l----------e~~e~~F~~g 1037 (1710)
T KOG1070|consen 1023 -------------------------------------------------------DLHVL----------ELPESLFPLG 1037 (1710)
T ss_pred -------------------------------------------------------hhhhh----------hCchhhcccc
Confidence 01111 3444566777
Q ss_pred CEEEEEEEeeecCCCCCCcceEEEEeccccccccccCCccccccccCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEcc
Q 000173 1115 QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194 (1935)
Q Consensus 1115 ~~v~~~Vl~~~~~~~~~~~~~~elS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~ 1194 (1935)
+.++|+|...+.. .++.-++ ++ + .... ..+|++.-|.|..+..+++.|++....-|+.+..
T Consensus 1038 ~al~~~V~~~~~~-----~tv~~iG--~~---------~-~~k~--~s~G~~l~Grv~kv~~~~~~l~~~~~~~G~~~~i 1098 (1710)
T KOG1070|consen 1038 KALDEYVVRNDKS-----KTVRAIG--FS---------K-SDKN--PSPGDILFGRVSKVLPGYLILQLPFKVFGRVSFI 1098 (1710)
T ss_pred cceeeEEecccce-----eEEEecc--cc---------c-CCCC--CCcchhhcceeeeeccceeEEecCCccccceEEe
Confidence 7777777665400 0000010 00 0 0111 2589999999999999999999999999976655
Q ss_pred -ccCCCCcchhhccccCCCCCEEEEEEEEEeCCCcEEEEEecccccCC-----CCcccccccccccccccCCCEEEEEEE
Q 000173 1195 -DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI-----SDKTVDISNDNMQTFIHEGDIVGGRIS 1268 (1935)
Q Consensus 1195 -~~s~~~~~~~~~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~~~-----~~~~~~~~~~~~~~~l~~G~iv~g~V~ 1268 (1935)
+++++.+ .+|...|..++.+.++++.++...+.+.||++...... .++...+.++++ .|+++.|.|.
T Consensus 1099 ~~~~d~~~--~~P~~~f~~~~~v~~~~L~vs~~n~~leLslr~sr~~~t~~~~kd~~iks~eDlk-----~g~iv~G~V~ 1171 (1710)
T KOG1070|consen 1099 EDMSDSYS--MTPVEHFTKIQIVYVCVLSVSALNKGLELSLRESRTKITPVDSKDGSIKSIEDLK-----IGDIVRGFVK 1171 (1710)
T ss_pred eehhcccc--CChHHhcccccEEEEEEEEEecccccceeecccccccCccccccCCcccchhhcc-----cCceeEEEEE
Confidence 6666543 35777899999999999999988888999998543211 122223345555 9999999999
Q ss_pred EEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCceEEEEeecccc
Q 000173 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1348 (1935)
Q Consensus 1269 ~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~~i~lSlr~s~ 1348 (1935)
.+.+. |+|+.|+.++.+++++++++|++... +...|++|+.|..+|+.++.. .++++||++++.
T Consensus 1172 nv~~~--glfi~ls~~v~a~v~is~~~ds~~k~-----------w~k~~~~gklv~~rv~~ve~~---s~riel~Lk~s~ 1235 (1710)
T KOG1070|consen 1172 NVETK--GLFIALSRKVEAFVPISGLSDSFEKE-----------WEKHLPVGKLVTGRVLSVEED---SKRIELSLKNSD 1235 (1710)
T ss_pred EecCC--cEEEEEccceEEEEEccccccchhhh-----------hhccCCccceeeeEEEEeecc---CceEEEEEeccc
Confidence 99999 99999999999999999999988776 667899999999999999987 679999999986
Q ss_pred cCCCCCCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCc--EEEEECccCCCcccCCccccCCCC
Q 000173 1349 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL--DAKVLLSNLSDGYVESPEKEFPIG 1426 (1935)
Q Consensus 1349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v--~g~V~~s~lsd~~~~~~~~~f~~G 1426 (1935)
-+. .........++++|+...|+|.++.++|+||.+++++ .|+.|+++..+....+....|..|
T Consensus 1236 ~~d--------------~~~~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~~~e~~d~~~e~it~~~~~~ 1301 (1710)
T KOG1070|consen 1236 IKD--------------TVKLLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCHISEEADDRGENITALYYAG 1301 (1710)
T ss_pred cCC--------------chhhhhhhhhhhccccccceEEEecCCceEEEecCcceecccccceeecchhhhhcccceecc
Confidence 111 1113344567999999999999999999999999887 899999999999999999999999
Q ss_pred cEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccc
Q 000173 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1506 (1935)
Q Consensus 1427 ~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~ 1506 (1935)
+.|.++++.++.+.+||.+.++.+......+.. ...+. .-|+=.+.+.
T Consensus 1302 ~~V~a~~lk~~~ek~rIsl~~k~s~~~~~dd~~---~~~~~-------------~e~v~~~~~~---------------- 1349 (1710)
T KOG1070|consen 1302 DRVKACVLKEDSEKKRISLGLKSSYLSSEDDAR---ITSYG-------------EEGVEMEEES---------------- 1349 (1710)
T ss_pred ceeeeEeeeccchhhhhhhhhhhhccCChhhhh---ccccc-------------ccCcchhccc----------------
Confidence 999999999999999999999987654211110 00100 0000000000
Q ss_pred ccCcccccCCCCEEEEEEEEEecCCCeeEEeccccccCCCcccccCCccchhhHHHHhhcccCcccccccCccccccccc
Q 000173 1507 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM 1586 (1935)
Q Consensus 1507 ~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1586 (1935)
..++ +.-+.+-+ +...|.... .. ...++.. ..++.. .+ +.
T Consensus 1350 ~~d~----~s~~~~~~----------------~d~g~q~~~--~g---~~~e~~~--d~~~~~---~p----------~~ 1389 (1710)
T KOG1070|consen 1350 HSDP----KSMEEVAA----------------EDPGFQSSS--GG---FNLEDAV--DEMSET---LP----------DA 1389 (1710)
T ss_pred ccCc----cchhhhcc----------------cCCCccccc--cc---eehhhhh--hhcccc---CC----------ch
Confidence 0000 00000000 000000000 00 0000000 000000 00 00
Q ss_pred c-ccCCCcccccccccccCCCCccccCCCCCCCcCcCCCCCC---CCcchh--hhhhhhhhhhhhhHhHHHHHHH-----
Q 000173 1587 E-SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQ---GHTDEA--KTIDEKNNRHAKKKEKEEREQE----- 1655 (1935)
Q Consensus 1587 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~k~~~e~~----- 1655 (1935)
. ++++.+...++.. .+.+.++++.+.+-+ ++.+++ .+......+ ....-++.+..
T Consensus 1390 le~s~~td~e~d~~~------------~~~e~~qde~dee~e~~kee~e~~~~~~e~~dl~~--~pesaeDferlvrssP 1455 (1710)
T KOG1070|consen 1390 LEDSCETDSEVDEEV------------EDEELDQDEKDEEKEKDKEEREENRSDEEERDLSR--APESAEDFERLVRSSP 1455 (1710)
T ss_pred hhhcccchhhhhhcc------------ccccccccccchhhhhhhhhccccccchhhccccc--CCcCHHHHHHHHhcCC
Confidence 0 0000000000000 000000000000000 000000 000000000 00000111111
Q ss_pred -----H-HHHHHHHhccCCCCcHHHHHHHHH-cCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhH
Q 000173 1656 -----I-RAAEERLLEKDAPRTPDEFERLVR-SSPN----SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK 1724 (1935)
Q Consensus 1656 -----~-~~~e~~~~~~~~~~a~~~ferll~-~~P~----s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ek 1724 (1935)
| +-+.-.+--.+.+.|++.+||+|. .|+. -..+|++|..++..-|.-+...++|+||.+..++
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~------ 1529 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA------ 1529 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch------
Confidence 1 111111112457889999999995 4553 4579999999999999999999999999986653
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRV 1801 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~--~~~vw~~~~ 1801 (1935)
+.++..++.++...+.+ +.|.++|++.++...+ ..+|..|+..+.+.++-++|++++.+|++--|. ...+--..|
T Consensus 1530 ~~V~~~L~~iy~k~ek~--~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKN--DEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 56899999999999865 8999999999988774 599999999999999999999999999988775 778888999
Q ss_pred HHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHHcC
Q 000173 1802 QRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTD-LWSIYLDQEIRLG 1877 (1935)
Q Consensus 1802 ~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~--~Pk~~d-lw~~ya~~e~k~g 1877 (1935)
++.++. +.+++|.+|+..+..+|++. ++|..|+..+.++|+.+.+|.+|||++.. .|+++- ++..|+++|-+.|
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRt--DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRT--DLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccch--hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 999999 99999999999999999995 89999999999999999999999999876 466665 6888999999999
Q ss_pred CHHHHHHHHHHHHh
Q 000173 1878 DVDLIRGLFERAIS 1891 (1935)
Q Consensus 1878 ~~e~ar~lferal~ 1891 (1935)
+-+.+..+=.||.+
T Consensus 1686 de~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1686 DEKNVEYVKARAKE 1699 (1710)
T ss_pred chhhHHHHHHHHHH
Confidence 98888777777765
|
|
| >COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-63 Score=603.63 Aligned_cols=492 Identities=23% Similarity=0.277 Sum_probs=440.9
Q ss_pred ccccccCCCceEEEEEEEEecCeEEEEeCCceEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeCh
Q 000173 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393 (1935)
Q Consensus 314 ~s~~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~p 393 (1935)
.+...+.||+.|.|+|.+|.++++.|++++...|+|++.+++.... ...|++|+.+.+.|+.+......+.||.+.
T Consensus 14 ~~~~~~~~G~vV~G~Vv~i~~~~v~Vdig~Kseg~ip~~E~~~~~~----~~~~~~gd~v~v~v~~~e~~~g~~~lS~~k 89 (541)
T COG0539 14 KSDEEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPV----EDVVQVGDEVEVLVLRVEDGEGELVLSRRK 89 (541)
T ss_pred cchhccCCCCEEEEEEEEEeCCeEEEEecCccccEeEHHHhccccc----cceecCCCEEEEEEEEEecCCceEEeeHHH
Confidence 4677899999999999999999999999999999999999987643 237999999999999999888899999987
Q ss_pred hhccCCC--CCCCCCCCCeEEeEEEEEEECCcceEEEcCCCCCccceEeeccccchHHHHhhhccccCCCEEEEEEEEEE
Q 000173 394 YLLHNRA--PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 471 (1935)
Q Consensus 394 ~~~~~~~--~~~~~~~G~iv~~~~V~~v~~~~G~~v~l~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~ 471 (1935)
.-....+ ....+..|.+|+ ++|....++ |+.|++.+ ++||+|.|+++..+++++. -.+|.++.+.|+.++
T Consensus 90 ~~~~~~w~~l~~~~e~~~~V~-~~v~~~vKG-G~~Vdi~g----vr~FlP~S~v~~r~v~d~~--~~~Gk~~~~kiie~d 161 (541)
T COG0539 90 AERERAWEKLEEAFENGEIVE-GKITGKVKG-GLTVDIEG----VRAFLPGSLVDVRPVRDLD--PLIGKELEFKILELD 161 (541)
T ss_pred HHHHHhHHHHHHHHhcCCeEE-EEEEEEecC-cEEEEECC----EEEeccHHHhccccccccc--ccCCceEEEEEEEEc
Confidence 6544333 346789999998 567777788 99999962 6999999999988777764 579999999999999
Q ss_pred ecCCeEEEEechhhc----cccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCC
Q 000173 472 HLEGLATGILKASAF----EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547 (1935)
Q Consensus 472 ~~d~~~~~s~k~~~~----~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~ 547 (1935)
..++.+++|.+...- +++...++.+++|++|+|+|++++++|+||+|+ |++|+||.+||||.++.+|++.|++||
T Consensus 162 ~~~n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdig-GvdGLlHiseiS~~rv~~P~~vvkvGd 240 (541)
T COG0539 162 KKRNNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGD 240 (541)
T ss_pred cccCcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEec-CeeeEEehhhccccccCCHHHhcccCC
Confidence 999999999765443 566788999999999999999999999999998 699999999999999999999999999
Q ss_pred EEEEEEEEE--eCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCC
Q 000173 548 ELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 625 (1935)
Q Consensus 548 ~v~~rVL~v--~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~ 625 (1935)
+|+|+||++ +++|+.||+|+++.++|..+-.. ..+|+.+.|+|+++.+|||||++++|+.||+|+|||+|.....
T Consensus 241 ~VkvkVi~~D~e~~RVsLSlK~l~~dPw~~i~~~---~~~g~~v~G~Vt~i~~~GafVei~~GvEGlvhvSEisw~~~~~ 317 (541)
T COG0539 241 EVKVKVISLDEERGRVSLSLKQLEEDPWEGIEKK---YPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKNV 317 (541)
T ss_pred EEEEEEEEEccCCCeEEEEehhcccCcHHHHhhh---cCCCCEEEEEEEEeecCcEEEEecCCccceeechhhcccccCC
Confidence 999999999 68999999999999766554333 4899999999999999999999999999999999999998878
Q ss_pred CCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCCC-CCc-cccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccc
Q 000173 626 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT-RVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703 (1935)
Q Consensus 626 ~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~~-~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~h 703 (1935)
|++++++||+|.|+||+||++++||+||||+... ||. ....+++|+.++|.|.++|++|+||.+ +++++|+++.++
T Consensus 318 P~evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~~~~g~~v~g~v~~~t~~g~fv~l--e~gidG~vh~~d 395 (541)
T COG0539 318 PSEVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADKHPVGDVVEGKVKSITDFGAFVEL--EGGIDGLVHLSD 395 (541)
T ss_pred HHHhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhhhcCCCCeEEEEEeeecccceEEcc--CCCccceEEHHh
Confidence 9999999999999999999999999999998754 554 335599999999999999999999999 889999999999
Q ss_pred cCCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEEC
Q 000173 704 LADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782 (1935)
Q Consensus 704 Lsd~~~~~~~~~~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~ 782 (1935)
|+|.....+.. .|+.|++++ .+|.+|++++++.|+.|+...+||+... ..++.|+.++|+|+++.++|+||+|.
T Consensus 396 ~sw~~~~~~~~--~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~~p~~~~~---~~~~~~~~v~~~v~~i~~~G~~v~l~ 470 (541)
T COG0539 396 LSWDRPGEEAE--KYKKGDEVEAKVLAVDKEKERISLGIKQLEESPWEEFS---EKYKKGSVVKGKVKSVKDKGAFVELG 470 (541)
T ss_pred cCccccCcHHH--hhccCcEEEEEEEEEecccceeeeehhhhccCchhhhH---hhccCCCeEEEEEEEEccCceEEEec
Confidence 99966554433 899999999 8999999999999999999999887643 34789999999999999999999999
Q ss_pred CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 783 ~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
+++.||+|.++++.+ .|++||+|+|+|+++|+.++++.||+|....
T Consensus 471 ~~v~G~i~~~~~~~~-------~~~~gd~v~a~v~~id~k~~ki~lSik~~~~ 516 (541)
T COG0539 471 GGVEGLIRLSELSRD-------VLKVGDEVEAVVVSIDKKNRKILLSIKALER 516 (541)
T ss_pred Cceeeeeecchhhhh-------hccCCCEEEEEEEEEcCCCCEEEEEechhhh
Confidence 999999999999876 7999999999999999999999999997643
|
|
| >COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=563.36 Aligned_cols=496 Identities=23% Similarity=0.322 Sum_probs=440.0
Q ss_pred CCCCCCCCeEEeEEEEEEECCcceEEEcCCCCCccceEeeccccchHHHHhhhccccCCCEEEEEEEEEEecCCeEEEEe
Q 000173 402 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 481 (1935)
Q Consensus 402 ~~~~~~G~iv~~~~V~~v~~~~G~~v~l~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~ 481 (1935)
...+.+|+++. ++|+.++.+ +++|+++.+ ..|++|+++++..+... .|++|+.+.+.|+.....++.+++|.
T Consensus 16 ~~~~~~G~vV~-G~Vv~i~~~-~v~Vdig~K---seg~ip~~E~~~~~~~~---~~~~gd~v~v~v~~~e~~~g~~~lS~ 87 (541)
T COG0539 16 DEEFEPGDVVK-GTVVSIEKD-GVLVDIGGK---SEGVIPISEFSNEPVED---VVQVGDEVEVLVLRVEDGEGELVLSR 87 (541)
T ss_pred hhccCCCCEEE-EEEEEEeCC-eEEEEecCc---cccEeEHHHhccccccc---eecCCCEEEEEEEEEecCCceEEeeH
Confidence 46789999997 689999998 899999974 38999999998765444 49999999999999998888999998
Q ss_pred chhhcc-ccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eC
Q 000173 482 KASAFE-GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 558 (1935)
Q Consensus 482 k~~~~~-~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~ 558 (1935)
++.... .+.-....+..|.+|+|+|+...+.|++|++. |+.||+|.+|++..++.++ .-.+|.++.++|+.+ .+
T Consensus 88 ~k~~~~~~w~~l~~~~e~~~~V~~~v~~~vKGG~~Vdi~-gvr~FlP~S~v~~r~v~d~--~~~~Gk~~~~kiie~d~~~ 164 (541)
T COG0539 88 RKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIE-GVRAFLPGSLVDVRPVRDL--DPLIGKELEFKILELDKKR 164 (541)
T ss_pred HHHHHHHhHHHHHHHHhcCCeEEEEEEEEecCcEEEEEC-CEEEeccHHHhcccccccc--cccCCceEEEEEEEEcccc
Confidence 766544 34455667889999999999999999999998 6999999999987544443 245999999999999 57
Q ss_pred CeEEEEEecccccchhhHH-hhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEE
Q 000173 559 KRITVTHKKTLVKSKLAIL-SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637 (1935)
Q Consensus 559 ~~i~ltlK~~l~~~~~~~~-~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~ 637 (1935)
+++.+|+|..+..+....- .-++++++|+++.|+|+++++|||||+++ |+.||+|+++|+|.++.+|++.|++||+|+
T Consensus 165 n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdig-GvdGLlHiseiS~~rv~~P~~vvkvGd~Vk 243 (541)
T COG0539 165 NNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGDEVK 243 (541)
T ss_pred CcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEec-CeeeEEehhhccccccCCHHHhcccCCEEE
Confidence 8999999988875554332 33678899999999999999999999995 599999999999999999999999999999
Q ss_pred EEEEEEeCCCCEEEEEEeeCCC-CCc-cccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCccccccccc
Q 000173 638 CRIMSSIPASRRINLSFMMKPT-RVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715 (1935)
Q Consensus 638 ~rVl~~d~~~~ri~lS~k~~~~-~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~ 715 (1935)
|+|+++|++++|+.||+|+... ||. ....+++|+.+.|+|++++++|+||++ .++++|++|.+++||..... +.
T Consensus 244 vkVi~~D~e~~RVsLSlK~l~~dPw~~i~~~~~~g~~v~G~Vt~i~~~GafVei--~~GvEGlvhvSEisw~~~~~--P~ 319 (541)
T COG0539 244 VKVISLDEERGRVSLSLKQLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEI--EEGVEGLVHVSEISWTKKNV--PS 319 (541)
T ss_pred EEEEEEccCCCeEEEEehhcccCcHHHHhhhcCCCCEEEEEEEEeecCcEEEEe--cCCccceeechhhcccccCC--HH
Confidence 9999999999999999998744 775 457899999999999999999999999 88999999999999954333 56
Q ss_pred ccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCcc
Q 000173 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794 (1935)
Q Consensus 716 ~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~l 794 (1935)
+.+++||+++ .+|.+|++++||+||+|+...+||+..... +++|.++.|.|.++|++|+||.+.+|+.||+|.+++
T Consensus 320 evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~---~~~g~~v~g~v~~~t~~g~fv~le~gidG~vh~~d~ 396 (541)
T COG0539 320 EVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADK---HPVGDVVEGKVKSITDFGAFVELEGGIDGLVHLSDL 396 (541)
T ss_pred HhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhhh---cCCCCeEEEEEeeecccceEEccCCCccceEEHHhc
Confidence 7899999999 899999999999999999999999875533 889999999999999999999999999999999999
Q ss_pred CcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccCCCCchhhHHHHHHHHHHHHhhccCCCcccccccccccC
Q 000173 795 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874 (1935)
Q Consensus 795 s~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~~~~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 874 (1935)
+|.....+...|+.|+.|+|.|+.+|++++|++|++|+... +|| ..+...++.
T Consensus 397 sw~~~~~~~~~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~------------------------~p~---~~~~~~~~~ 449 (541)
T COG0539 397 SWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIKQLEE------------------------SPW---EEFSEKYKK 449 (541)
T ss_pred CccccCcHHHhhccCcEEEEEEEEEecccceeeeehhhhcc------------------------Cch---hhhHhhccC
Confidence 99887777779999999999999999999999999998754 344 334677999
Q ss_pred ccEEEEEEEEeecceeEEEeccCCceeEEEeeeecCCccccCCCeEEEEEEEeeccccEEEEeehhhhhhh
Q 000173 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945 (1935)
Q Consensus 875 G~~v~g~V~~~~~~g~~v~~~~~~~v~g~i~~~~ls~~~~~~G~~v~~~vl~~~~~~~~v~ls~k~~l~~~ 945 (1935)
|+.|+|+|+++.++|+++.+.+ ++.|+|+.++++...+++||+++|+|+.+|..++.+.||+|+...+.
T Consensus 450 ~~~v~~~v~~i~~~G~~v~l~~--~v~G~i~~~~~~~~~~~~gd~v~a~v~~id~k~~ki~lSik~~~~~e 518 (541)
T COG0539 450 GSVVKGKVKSVKDKGAFVELGG--GVEGLIRLSELSRDVLKVGDEVEAVVVSIDKKNRKILLSIKALERKE 518 (541)
T ss_pred CCeEEEEEEEEccCceEEEecC--ceeeeeecchhhhhhccCCCEEEEEEEEEcCCCCEEEEEechhhhhh
Confidence 9999999999999999999986 57999999999999999999999999999999999999999877654
|
|
| >PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-56 Score=578.82 Aligned_cols=495 Identities=20% Similarity=0.243 Sum_probs=420.0
Q ss_pred cccccccCCCceEEEEEEEEecCeEEEEeCCceEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeC
Q 000173 313 GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392 (1935)
Q Consensus 313 ~~s~~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~ 392 (1935)
..++..+.+|.+|.|+|.+|++++++|++++..+|+|+..++.. .+++|++|.|+|+.+++. . +.||..
T Consensus 313 ~~~~~~~~~G~iV~G~Vv~i~~~~v~VdiG~K~eGiI~~~E~~~---------~~kvGd~i~~~V~~~~~~-~-~~LS~~ 381 (863)
T PRK12269 313 RYSFEAPEPGSVRMGTVVQVNAGTVFVDIGGKSEGRVPVEEFEA---------PPKAGDGVRVYVERVTPY-G-PELSKT 381 (863)
T ss_pred hhccccCCCCCEEEEEEEEEECCEEEEEeCCCceEEeEHHHhcc---------CCCCCCEEEEEEEEEcCC-c-eEEEeh
Confidence 44578899999999999999999999999999999999888732 479999999999998874 3 778887
Q ss_pred hhhcc--CCCCCCCCCCCCeEEeEEEEEEE--CCcceEEEcCCCCCccceEeeccccchHHHHhhhccccCCCEEEEEEE
Q 000173 393 PYLLH--NRAPPSHVKVGDIYDQSKVVRVD--RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 468 (1935)
Q Consensus 393 p~~~~--~~~~~~~~~~G~iv~~~~V~~v~--~~~G~~v~l~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~ 468 (1935)
..... +....+++..|++|+ ++|.+++ .+ |++|+++.+ ++||+|.|+++....+++. ..+|+++.+.|+
T Consensus 382 ~~~~~~~~~~l~~a~~~g~~V~-G~Vv~v~~~kg-G~~Vdig~~---~~gfiP~se~~~~~~~~~~--~~vG~~ie~~V~ 454 (863)
T PRK12269 382 KADRLGLKVKLRDAERDGTPVE-GRIVRLTEKKS-GFEVDLGAG---MMAFLPISQSDCQKVDAPE--SLIGLTSKFYIE 454 (863)
T ss_pred HhhhhHHHHHHHHHHhCCCeEE-EEEEEEEeecC-EEEEEECCC---cEEEEEHHHhccccccchH--HhCCCeEEEEEE
Confidence 54321 122246789999998 6788764 45 899999643 4899999998755444443 469999999999
Q ss_pred EEEe-----cCCeEEEEechhhcc----ccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCC
Q 000173 469 GFRH-----LEGLATGILKASAFE----GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539 (1935)
Q Consensus 469 ~~~~-----~d~~~~~s~k~~~~~----~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p 539 (1935)
.++. .++.+++|.+....+ .....++++.+|++|+|+|.+++++|+||+++ |++||||.+|++|.+..+|
T Consensus 455 ~~~~~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~l~~G~~V~G~Vk~i~~~G~fVdl~-Gv~Gfvp~SeiS~~~v~~~ 533 (863)
T PRK12269 455 RISQSKQHRGNDNIVINRRRYLEERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARP 533 (863)
T ss_pred EEecccccCCCCeEEEEHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEEEEeCCcEEEEEC-CEEEEEEchhccccccCCH
Confidence 9875 335789997654322 12234678999999999999999999999995 8999999999999888899
Q ss_pred CCCCCCCCEEEEEEEEE--eCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcc
Q 000173 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617 (1935)
Q Consensus 540 ~~~fkvG~~v~~rVL~v--~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se 617 (1935)
.+.|++||+|+||||.+ .++++.||+|..+.+++... .+.+++|+++.|+|+++.++|+||++++|+.||+|+|+
T Consensus 534 ~~~~kvGq~v~vkVi~iD~e~~rI~LSlK~l~~~p~~~~---~~~~~vG~iV~G~V~~I~~fG~fVeL~~gveGLvhiSE 610 (863)
T PRK12269 534 REFVKKGQTIELKVIRLDQAEKRINLSLKHFQPDPWLEF---ENKFGVNDVVKGRVTKIADFGAFIELAEGIEGLAHISE 610 (863)
T ss_pred HHhccCCCEEEEEEEEEecCCCeEEEEEeccccchhhhh---hccCCCCCEEEEEEEEEeCCeEEEEecCCceeeeEHHH
Confidence 99999999999999999 47899999998766543222 23468999999999999999999999999999999999
Q ss_pred cCC-CCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCC-CCCcc-ccccCCCCeEEEEEEEEecCcEEEEEEecCc
Q 000173 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 694 (1935)
Q Consensus 618 ~~~-~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~-~~~~~-~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~ 694 (1935)
++| ..+.+|.+.|++||+|+|+|+++|++++|+.||+++.. ++|.. .+.+++|++++|+|++++++|+||++ .++
T Consensus 611 ls~~~~~~~p~~~~kvGd~V~vkVl~iD~e~~rIsLS~K~l~~~Pw~~~~~~~~vG~~v~G~V~~i~~~G~fV~l--~~g 688 (863)
T PRK12269 611 FSWVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIVKVTNAGAFIEM--EEG 688 (863)
T ss_pred hcCccccCCHHHcCCCCCEEEEEEEEEecccCceEEEehhcccCchHHHHHhCCCCCEEEEEEEEEecceEEEEe--CCC
Confidence 999 56788999999999999999999999999999999754 46754 46789999999999999999999999 789
Q ss_pred eeEEEeccccCCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEe
Q 000173 695 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773 (1935)
Q Consensus 695 v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~ 773 (1935)
++|+||.++|||..... ...+.|++||.|+ .+|.+|++++++.||+|+...++|.... .++++|+.+.|+|++++
T Consensus 689 V~GlIh~sels~~~~~~-~~~~~~kvGq~VkvkVl~ID~e~rrI~LS~K~l~~dpw~~~~---~~~~vG~iV~GkV~~v~ 764 (863)
T PRK12269 689 IDGFLHVDDLSWVKRTR-PADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVFA---NAYGVGSTVEGEVSSVT 764 (863)
T ss_pred cEEEEEhHHhhcccccc-chhhccCCCCEEEEEEEEEeccCCEEEEEecccccChHHHHH---hhCCCCCEEEEEEEEEe
Confidence 99999999999843221 1345799999999 8999999999999999999988887632 34789999999999999
Q ss_pred cCeEEEEECCCeEEEeeCCccCcccccCcc---cCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLS---KTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 774 ~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~---~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
++|+||++.+|+.||+|.++++|++..++. ..|++||.|+|+|+++|+++++|.||+|+...
T Consensus 765 ~~GvFVeL~~gVeGlI~~s~lsdd~~~~~~~~~~~f~vGD~V~v~Vl~iD~~~rkI~LSlk~~~~ 829 (863)
T PRK12269 765 DFGIFVRVPGGVEGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVRDYQR 829 (863)
T ss_pred cCeEEEEcCCCeEEEEEHHHcCCcccccchhhccccCCCCEEEEEEEEEEcCCCEEEEEEechhh
Confidence 999999999999999999999998765543 45999999999999999999999999997753
|
|
| >PRK06299 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=567.87 Aligned_cols=497 Identities=20% Similarity=0.254 Sum_probs=432.3
Q ss_pred cccCCCceEEEEEEEEecCeEEEEeCCceEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeChhhc
Q 000173 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396 (1935)
Q Consensus 317 ~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~p~~~ 396 (1935)
..+.+|++|.|+|.+++++|++|++++...|++|..|++.... ...|++|++++|+|+.+++..+.+.||+++...
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdig~k~~g~lp~~e~~~~~~----~~~~~vG~~i~~~V~~~~~~~~~i~lS~k~~~~ 101 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDVGLKSEGRIPLEEFKNEQG----ELEVKVGDEVEVYVERIEDGFGETVLSREKAKR 101 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEeCCCeEEEEEHHHhcCccc----cccCCCCCEEEEEEEEEECCCCcEEEechHHHH
Confidence 4578999999999999999999999888999999999985322 246999999999999999988999999987643
Q ss_pred cC--CCCCCCCCCCCeEEeEEEEEEECCcceEEEcCCCCCccceEeeccccchHHHHhhhccccCCCEEEEEEEEEEecC
Q 000173 397 HN--RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474 (1935)
Q Consensus 397 ~~--~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~l~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d 474 (1935)
.. ....+++..|++|+ ++|..+..+ |++|++++ ++||+|.+++++..+.+++ +.+|+++.|+|+.++...
T Consensus 102 ~~~~~~l~~~~~~g~~v~-g~V~~~~~~-G~~V~~~g----~~gfip~s~~~~~~~~~~~--~~vG~~i~~~V~~~d~~~ 173 (565)
T PRK06299 102 LEAWDKLEKAFENGEIVE-GVINGKVKG-GFTVDLNG----VEAFLPGSQVDVRPVRDTD--PLEGKELEFKVIKLDKKR 173 (565)
T ss_pred HHHHHHHHHHhhCCCEEE-EEEEEEECC-EEEEEECC----EEEEEEHHHccCcCCCChH--HhCCCEEEEEEEEEECCC
Confidence 32 22235788999998 678888887 99999972 6999999999976655553 679999999999999999
Q ss_pred CeEEEEechhhcc----ccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEE
Q 000173 475 GLATGILKASAFE----GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550 (1935)
Q Consensus 475 ~~~~~s~k~~~~~----~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~ 550 (1935)
+.+.+|.++.... ++...+.++++|++++|+|+++.++|++|+++ +++|+||.++++|.+..+|.+.|++|++|+
T Consensus 174 ~~i~lS~k~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~~~~~~~~~kvG~~v~ 252 (565)
T PRK06299 174 NNIVVSRRAVLEEERAEEREELLENLEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKRVNHPSEVVNVGDEVK 252 (565)
T ss_pred CEEEEEhHHhhhhhhhhHHHHHHhcCCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccccCCHhhcCCCCCEEE
Confidence 9999998876532 22344678999999999999999999999998 899999999999988899999999999999
Q ss_pred EEEEEE--eCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCC-CCCCCC
Q 000173 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEPS 627 (1935)
Q Consensus 551 ~rVL~v--~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~-~~~~~~ 627 (1935)
|+|+++ +++++.||+|....++|.... +.+++|+++.|+|+++.++|+||++.+++.||+|.++++|. ...+|.
T Consensus 253 v~V~~~d~~~~~i~lS~k~~~~~p~~~~~---~~~~~G~~v~g~V~~i~~~G~fV~l~~~v~Glv~~sel~~~~~~~~~~ 329 (565)
T PRK06299 253 VKVLKFDKEKKRVSLGLKQLGEDPWEAIE---KKYPVGSKVKGKVTNITDYGAFVELEEGIEGLVHVSEMSWTKKNKHPS 329 (565)
T ss_pred EEEEEEeCCCCeEEEEEEecccChhHHHH---hhCCCCCEEEEEEEEEeCCeEEEEeCCCCEEEEEHHHcCccccccCHH
Confidence 999999 468999999988766543322 34588999999999999999999999999999999999975 345677
Q ss_pred CCCCCCCEEEEEEEEEeCCCCEEEEEEeeCC-CCCc-cccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccC
Q 000173 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705 (1935)
Q Consensus 628 ~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~-~~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLs 705 (1935)
..|++||.|+|+|+++|++++++.||+++.. .+|. ....+++|++|.|+|+.++++|++|++ .++++|+||..+|+
T Consensus 330 ~~~~~G~~v~v~V~~id~~~~~i~ls~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l--~~~v~g~i~~s~l~ 407 (565)
T PRK06299 330 KVVSVGQEVEVMVLEIDEEKRRISLGLKQCKENPWEEFAEKYPVGDVVEGKVKNITDFGAFVGL--EGGIDGLVHLSDIS 407 (565)
T ss_pred HhcCCCCEEEEEEEEEcCCCCEEEEehHHhccchhhhHHHhCCCCCEEEEEEEEEecceEEEEC--CCCCEEEEEHHHcC
Confidence 7899999999999999999999999998653 3443 234678999999999999999999999 77999999999999
Q ss_pred CcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCC
Q 000173 706 DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784 (1935)
Q Consensus 706 d~~~~~~~~~~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~g 784 (1935)
+... ...+...|++|+.|+ +++.+|.+++++.||+|++..++|... .+++++|+++.|+|+++.++|+||++.+|
T Consensus 408 ~~~~-~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ls~k~~~~~p~~~~---~~~~~~G~vV~G~V~~v~~~G~fV~l~~g 483 (565)
T PRK06299 408 WDKK-GEEAVELYKKGDEVEAVVLKVDVEKERISLGIKQLEEDPFEEF---AKKHKKGSIVTGTVTEVKDKGAFVELEDG 483 (565)
T ss_pred cccc-ccChHhhCCCCCEEEEEEEEEeCCCCEEEEEEehhhcCchhHH---HhhcCCCCEEEEEEEEEecCceEEecCCC
Confidence 7432 123557899999999 799999999999999999998888653 35678999999999999999999999999
Q ss_pred eEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 785 l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
+.||+|.+++++.++.++.+.|++||.|+|+|+++|++++|+.||+|++..
T Consensus 484 i~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V~~vd~~~~~i~LS~k~~~~ 534 (565)
T PRK06299 484 VEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRISLSIKALDE 534 (565)
T ss_pred cEEEEEHHHhcchhccCccccCCCCCEEEEEEEEEccccCEEEEEeeehhh
Confidence 999999999999999999999999999999999999999999999998754
|
|
| >TIGR00717 rpsA ribosomal protein S1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-55 Score=563.74 Aligned_cols=490 Identities=22% Similarity=0.299 Sum_probs=424.4
Q ss_pred cccCCCceEEEEEEEEecCeEEEEeCCceEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeChhhc
Q 000173 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396 (1935)
Q Consensus 317 ~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~p~~~ 396 (1935)
..+.||++|.|+|.+|+++|++|+|++..+|+++..+++... ..|++|+.+.++|+.+++..+++.||+.+...
T Consensus 14 ~~~~~G~~v~g~V~~i~~~~~~v~~g~k~~g~i~~~E~~~~~------~~~~vGd~i~~~V~~~~~~~g~i~lS~~~~~~ 87 (516)
T TIGR00717 14 EETRPGSIVKGTVVAINKDTVFVDVGLKSEGRIPKEEFLDAP------LEIQVGDEVEVYLDRVEDRFGETVLSREKAQR 87 (516)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEcCCCcEEEEEHHHhcCCc------cCCCCCCEEEEEEEEEeCCCCcEEEEHHHhhh
Confidence 458999999999999999999999999999999999987532 47999999999999998888999999987643
Q ss_pred cCCC--CCCCCCCCCeEEeEEEEEEECCcceEEEcCCCCCccceEeeccccchHHHHhhhccccCCCEEEEEEEEEEecC
Q 000173 397 HNRA--PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474 (1935)
Q Consensus 397 ~~~~--~~~~~~~G~iv~~~~V~~v~~~~G~~v~l~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d 474 (1935)
...+ ...++..|.+++ ++|.++..+ |++|++++ ++||+|.++++...+.+. .+.+|++++|+|+.++...
T Consensus 88 ~~~~~~l~~a~~~g~~v~-g~V~~~~~~-g~~V~i~g----~~~flP~s~~~~~~~~~~--~~~vG~~i~~~v~~~~~~~ 159 (516)
T TIGR00717 88 HELWIKLEKAYEEGSIVE-GKIVGKVKG-GFIVDLNG----VEAFLPGSQVDVKPIKDL--DSLIGKTLKFKIIKLDQKR 159 (516)
T ss_pred hHHHHHHHHHhhCCCeEE-EEEEEEECC-EEEEEECC----EEEEEeHHHhcCcccCch--hhhCCCEEEEEEEEEECCC
Confidence 2222 235678999998 688988888 99999972 599999999875433333 3689999999999999988
Q ss_pred CeEEEEechhhccc----cccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEE
Q 000173 475 GLATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550 (1935)
Q Consensus 475 ~~~~~s~k~~~~~~----~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~ 550 (1935)
+.+++|.++...+. ....++++++|++|+|+|+++.++|++|+++ +++||+|.++++|.+..+|...|++|++|+
T Consensus 160 ~~iv~Srk~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~~~~~~~~~~vG~~v~ 238 (516)
T TIGR00717 160 NNIVVSRRAYLEEERSQAREELLENLKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKRVKHPSEYVKVGQEVK 238 (516)
T ss_pred CcEEEEHHHHHHHHHHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCCCCCHHHhccCCCEEE
Confidence 89999987653221 2345678999999999999999999999996 799999999999988888988999999999
Q ss_pred EEEEEE--eCCeEEEEEecccccchhhHHhhh-hhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCC-CCCCC
Q 000173 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEP 626 (1935)
Q Consensus 551 ~rVL~v--~~~~i~ltlK~~l~~~~~~~~~~~-~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~-~~~~~ 626 (1935)
|+|+++ +++++.||+|....++ |..+ +.+++|+++.|+|+++.++|+||++.+++.||+|.++++|. ...+|
T Consensus 239 v~Vl~~d~~~~~i~lS~k~~~~~p----~~~~~~~~~~G~i~~g~V~~v~~~G~fV~l~~~v~g~v~~sels~~~~~~~~ 314 (516)
T TIGR00717 239 VKVIKFDKEKGRISLSLKQLGEDP----WEAIEKKFPVGDKITGRVTNLTDYGVFVEIEEGIEGLVHVSEMSWVKKNSHP 314 (516)
T ss_pred EEEEEEECCCCcEEEEEEecchhH----HHHHHhhccCCCEEEEEEEEeeCCcEEEEeCCCCEEEEEHHHcCCccccCCH
Confidence 999999 4678999999876543 3333 34689999999999999999999999999999999999975 34566
Q ss_pred CCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCC-CCCcc-ccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEecccc
Q 000173 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704 (1935)
Q Consensus 627 ~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~-~~~~~-~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hL 704 (1935)
.+.|++||.|+|+|+++|++++++.||+++.. .+|.. .+.+++|++++|+|++++++|+||++ +++++|+||..+|
T Consensus 315 ~~~~~vG~~v~v~V~~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l--~~~v~glv~~s~l 392 (516)
T TIGR00717 315 SKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANPWEQFEEKHPVGDRVTGKIKKITDFGAFVEL--EGGIDGLIHLSDI 392 (516)
T ss_pred HHhccCCCEEEEEEEEEcCCCCEEEEEehhcccCcHHHHHHhCCCCCEEEEEEEEEecceEEEEC--CCCCEEEEEHHHC
Confidence 67899999999999999999999999998753 34432 24688999999999999999999999 7799999999999
Q ss_pred CCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECC
Q 000173 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783 (1935)
Q Consensus 705 sd~~~~~~~~~~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~ 783 (1935)
+|.... ....+.+++|+.+. +++.+|.+++++.||+|+++.++|... .+++++|+.+.|.|++++++|+||++.+
T Consensus 393 s~~~~~-~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ls~K~~~~~p~~~~---~~~~~~G~~v~g~V~~v~~~G~fV~l~~ 468 (516)
T TIGR00717 393 SWDKDG-READHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENPWEKF---AAKYKVGSVVKGKVTEIKDFGAFVELPG 468 (516)
T ss_pred cCcccC-CCHhHccCCCCEEEEEEEEEeCcCCEEEEeeccccCCchhhh---hhccCcceEEEEEEEEEecceEEEEcCC
Confidence 984321 12346899999999 799999999999999999988888653 3567899999999999999999999999
Q ss_pred CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 784 gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
++.||+|.+++++++..++.+.|++||.|+|+|+++|++++|+.||+|
T Consensus 469 ~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~id~~~~~i~ls~k 516 (516)
T TIGR00717 469 GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKVSLSVK 516 (516)
T ss_pred CeEEEEEHHHcCccccccccccCCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999986
|
This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned. |
| >PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=564.43 Aligned_cols=507 Identities=18% Similarity=0.255 Sum_probs=415.0
Q ss_pred cccccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeccCCCCcccchhhhhhh
Q 000173 964 ASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 1043 (1935)
Q Consensus 964 ~~~~l~~G~~v~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~l~L~~~~ 1043 (1935)
.+..++.|+.|+|+|..++++++||++ +++..|++|..+|. ..+++|++|.|.|..++ + .+ ..|+...
T Consensus 315 ~~~~~~~G~iV~G~Vv~i~~~~v~Vdi--G~K~eGiI~~~E~~------~~~kvGd~i~~~V~~~~--~-~~-~~LS~~~ 382 (863)
T PRK12269 315 SFEAPEPGSVRMGTVVQVNAGTVFVDI--GGKSEGRVPVEEFE------APPKAGDGVRVYVERVT--P-YG-PELSKTK 382 (863)
T ss_pred ccccCCCCCEEEEEEEEEECCEEEEEe--CCCceEEeEHHHhc------cCCCCCCEEEEEEEEEc--C-Cc-eEEEehH
Confidence 356799999999999999999999999 89999999999984 23689999999999975 2 23 3333221
Q ss_pred ccccccccccccccCCCCCCCCeEEEEEEEEe--CCeEEEEeCCCeeEEEEeeeccCCccchhhccccCCCCCCEEEEEE
Q 000173 1044 ISETETSSSKRAKKKSSYDVGSLVQAEITEIK--PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121 (1935)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~vk--~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~p~~~~~~G~~v~~~V 1121 (1935)
... ...|.+-...++.|++|+|+|.++. +.|+.|+++.+..|+++.+|+..... ..+ ...+|++++++|
T Consensus 383 ~~~----~~~~~~l~~a~~~g~~V~G~Vv~v~~~kgG~~Vdig~~~~gfiP~se~~~~~~----~~~-~~~vG~~ie~~V 453 (863)
T PRK12269 383 ADR----LGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKV----DAP-ESLIGLTSKFYI 453 (863)
T ss_pred hhh----hHHHHHHHHHHhCCCeEEEEEEEEEeecCEEEEEECCCcEEEEEHHHhccccc----cch-HHhCCCeEEEEE
Confidence 100 0112233457889999999999984 57999999888999999999854321 112 225899999999
Q ss_pred EeeecCCCCCCcceEEEEeccccccccccCCccccccccCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCc
Q 000173 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201 (1935)
Q Consensus 1122 l~~~~~~~~~~~~~~elS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~ 1201 (1935)
+.++....+...+.+.||.|..+-..........+++ +++|+.|+|+|.++.++|++|+++ +++|++|.++++|+.
T Consensus 454 ~~~~~~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~--l~~G~~V~G~Vk~i~~~G~fVdl~-Gv~Gfvp~SeiS~~~- 529 (863)
T PRK12269 454 ERISQSKQHRGNDNIVINRRRYLEERARQAREEFFNS--VHIEDSVSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGH- 529 (863)
T ss_pred EEEecccccCCCCeEEEEHHHHHHHHHHHHHHHHHhc--CCCCCEEEEEEEEEeCCcEEEEEC-CEEEEEEchhccccc-
Confidence 9986321111234699998874332211000112444 589999999999999999999995 899999999999874
Q ss_pred chhhccccCCCCCEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEe
Q 000173 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281 (1935)
Q Consensus 1202 ~~~~~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l 1281 (1935)
+.++.+.|++||.++|+|+++|.+++++.||++... .++|....+.++ +|+++.|+|+++.++ |+||+|
T Consensus 530 -v~~~~~~~kvGq~v~vkVi~iD~e~~rI~LSlK~l~---~~p~~~~~~~~~-----vG~iV~G~V~~I~~f--G~fVeL 598 (863)
T PRK12269 530 -VARPREFVKKGQTIELKVIRLDQAEKRINLSLKHFQ---PDPWLEFENKFG-----VNDVVKGRVTKIADF--GAFIEL 598 (863)
T ss_pred -cCCHHHhccCCCEEEEEEEEEecCCCeEEEEEeccc---cchhhhhhccCC-----CCCEEEEEEEEEeCC--eEEEEe
Confidence 456778899999999999999999999999999863 577876666666 999999999999999 999999
Q ss_pred CCceEEEEecccccc-cccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCceEEEEeecccccCCCCCCCCCCC
Q 000173 1282 GPHLYGRVHFTELKN-ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360 (1935)
Q Consensus 1282 ~~~~~G~v~~tel~d-~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~~i~lSlr~s~~~~~~~~~~~~~ 1360 (1935)
++++.|++|++|+++ ....+ |.+.|++||.|+|+|+++|.+ ++++.||++... .
T Consensus 599 ~~gveGLvhiSEls~~~~~~~-----------p~~~~kvGd~V~vkVl~iD~e---~~rIsLS~K~l~-----~------ 653 (863)
T PRK12269 599 AEGIEGLAHISEFSWVKKTSK-----------PSDMVKIGDEVECMILGYDIQ---AGRVSLGLKQVT-----A------ 653 (863)
T ss_pred cCCceeeeEHHHhcCccccCC-----------HHHcCCCCCEEEEEEEEEecc---cCceEEEehhcc-----c------
Confidence 999999999999975 22333 888899999999999999986 679999999886 2
Q ss_pred CCCCCCccchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-CccccCCCCcEEEEEEEEEeCC
Q 000173 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-SPEKEFPIGKLVAGRVLSVEPL 1439 (1935)
Q Consensus 1361 ~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~-~~~~~f~~G~~V~~kVl~vd~~ 1439 (1935)
++|....+++++|+++.|+|++++++|+||+++++++|+||.+++||.... .+.+.|++||.|+|+|+++|++
T Consensus 654 ------~Pw~~~~~~~~vG~~v~G~V~~i~~~G~fV~l~~gV~GlIh~sels~~~~~~~~~~~~kvGq~VkvkVl~ID~e 727 (863)
T PRK12269 654 ------NPWEEIEARYPVGARFTRRIVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQ 727 (863)
T ss_pred ------CchHHHHHhCCCCCEEEEEEEEEecceEEEEeCCCcEEEEEhHHhhccccccchhhccCCCCEEEEEEEEEecc
Confidence 234444567999999999999999999999999999999999999997654 4556899999999999999999
Q ss_pred CCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCc---ccccCC
Q 000173 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI---ETIYRA 1516 (1935)
Q Consensus 1440 ~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~---~~~~~~ 1516 (1935)
++||.||+|+...+||... ..++++|++|.|+|+++.+||+||+|.+ +++|++|+++++|++..+. .+.|++
T Consensus 728 ~rrI~LS~K~l~~dpw~~~----~~~~~vG~iV~GkV~~v~~~GvFVeL~~-gVeGlI~~s~lsdd~~~~~~~~~~~f~v 802 (863)
T PRK12269 728 ARRIRLGVKQLSDNPWQVF----ANAYGVGSTVEGEVSSVTDFGIFVRVPG-GVEGLVRKQHLVENRDGDPGEALRKYAV 802 (863)
T ss_pred CCEEEEEecccccChHHHH----HhhCCCCCEEEEEEEEEecCeEEEEcCC-CeEEEEEHHHcCCcccccchhhccccCC
Confidence 9999999999888887532 4568999999999999999999999987 7999999999999876443 356999
Q ss_pred CCEEEEEEEEEecCCCeeEEeccccc
Q 000173 1517 GEKVKVKILKVDKEKRRISLGMKSSY 1542 (1935)
Q Consensus 1517 Gd~V~~~Il~id~~~~ri~lslK~~~ 1542 (1935)
||.|+++|+++|+++++|.||+|++.
T Consensus 803 GD~V~v~Vl~iD~~~rkI~LSlk~~~ 828 (863)
T PRK12269 803 GDRVKAVIVDMNVKDRKVAFSVRDYQ 828 (863)
T ss_pred CCEEEEEEEEEEcCCCEEEEEEechh
Confidence 99999999999999999999999753
|
|
| >PRK06299 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-54 Score=560.90 Aligned_cols=508 Identities=22% Similarity=0.303 Sum_probs=426.6
Q ss_pred cccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeccCCCCcccchhhhhhhcc
Q 000173 966 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045 (1935)
Q Consensus 966 ~~l~~G~~v~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~l~L~~~~~~ 1045 (1935)
.+++.|+.|+|+|..+++++++|++ +++..|++|.+++.. ..+...|.+|+.+.+.|..++ +..++++|+.+...
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdi--g~k~~g~lp~~e~~~-~~~~~~~~vG~~i~~~V~~~~--~~~~~i~lS~k~~~ 100 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDV--GLKSEGRIPLEEFKN-EQGELEVKVGDEVEVYVERIE--DGFGETVLSREKAK 100 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEe--CCCeEEEEEHHHhcC-ccccccCCCCCEEEEEEEEEE--CCCCcEEEechHHH
Confidence 4578999999999999999999999 788999999999952 223457999999999999986 44566666544321
Q ss_pred ccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEeeeccCCccchhhccccCCCCCCEEEEEEEeee
Q 000173 1046 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125 (1935)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~G~~v~~~V~~vk~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~ 1125 (1935)
. ...|..-...++.|++|+|+|.++.+.|+.|+++ ++.|++|.+++.+... .++ .+.+|++++|+|+.++
T Consensus 101 ~----~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~~~-g~~gfip~s~~~~~~~---~~~--~~~vG~~i~~~V~~~d 170 (565)
T PRK06299 101 R----LEAWDKLEKAFENGEIVEGVINGKVKGGFTVDLN-GVEAFLPGSQVDVRPV---RDT--DPLEGKELEFKVIKLD 170 (565)
T ss_pred H----HHHHHHHHHHhhCCCEEEEEEEEEECCEEEEEEC-CEEEEEEHHHccCcCC---CCh--HHhCCCEEEEEEEEEE
Confidence 1 0112222346778999999999999999999998 8999999999865431 222 2569999999999998
Q ss_pred cCCCCCCcceEEEEeccccccccccCCccccccccCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCcchhh
Q 000173 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205 (1935)
Q Consensus 1126 ~~~~~~~~~~~elS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~~~~~ 1205 (1935)
.. +..+.||+|+..-..........+.+ +++|+.+.|+|..+.+++++|+++ ++.|++|.++++|+. +.+
T Consensus 171 ~~-----~~~i~lS~k~~~~~~~~~~~~~~~~~--l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~--~~~ 240 (565)
T PRK06299 171 KK-----RNNIVVSRRAVLEEERAEEREELLEN--LEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKR--VNH 240 (565)
T ss_pred CC-----CCEEEEEhHHhhhhhhhhHHHHHHhc--CCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccc--cCC
Confidence 32 23589999986522111000012333 699999999999999999999998 899999999999863 457
Q ss_pred ccccCCCCCEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEeCCce
Q 000173 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285 (1935)
Q Consensus 1206 ~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~ 1285 (1935)
+.+.|++||.|.|+|+++|.+++++.||++... .++|......++ +|+++.|+|+++.+. |+||+|++++
T Consensus 241 ~~~~~kvG~~v~v~V~~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~~v~g~V~~i~~~--G~fV~l~~~v 310 (565)
T PRK06299 241 PSEVVNVGDEVKVKVLKFDKEKKRVSLGLKQLG---EDPWEAIEKKYP-----VGSKVKGKVTNITDY--GAFVELEEGI 310 (565)
T ss_pred HhhcCCCCCEEEEEEEEEeCCCCeEEEEEEecc---cChhHHHHhhCC-----CCCEEEEEEEEEeCC--eEEEEeCCCC
Confidence 788899999999999999999999999999764 467875555555 999999999999999 9999999999
Q ss_pred EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCceEEEEeecccccCCCCCCCCCCCCCCCC
Q 000173 1286 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1365 (1935)
Q Consensus 1286 ~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~~i~lSlr~s~~~~~~~~~~~~~~~~~~ 1365 (1935)
.|++|++|+++.... .+|...|++|+.|+|+|+++|.+ ++++.||+|.+. .
T Consensus 311 ~Glv~~sel~~~~~~----------~~~~~~~~~G~~v~v~V~~id~~---~~~i~ls~k~~~-----~----------- 361 (565)
T PRK06299 311 EGLVHVSEMSWTKKN----------KHPSKVVSVGQEVEVMVLEIDEE---KRRISLGLKQCK-----E----------- 361 (565)
T ss_pred EEEEEHHHcCccccc----------cCHHHhcCCCCEEEEEEEEEcCC---CCEEEEehHHhc-----c-----------
Confidence 999999999754321 12667789999999999999986 579999999885 2
Q ss_pred CccchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-CCccccCCCCcEEEEEEEEEeCCCCEEE
Q 000173 1366 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1935)
Q Consensus 1366 ~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~-~~~~~~f~~G~~V~~kVl~vd~~~~ri~ 1444 (1935)
+++.....++++|++|.|+|++++++|+||+|+.+++|++|+++++|.+. .+|.+.|++||.|+|+|+++|+++++|.
T Consensus 362 -~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~g~i~~s~l~~~~~~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ 440 (565)
T PRK06299 362 -NPWEEFAEKYPVGDVVEGKVKNITDFGAFVGLEGGIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERIS 440 (565)
T ss_pred -chhhhHHHhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHcCccccccChHhhCCCCCEEEEEEEEEeCCCCEEE
Confidence 23445556789999999999999999999999999999999999999887 8899999999999999999999999999
Q ss_pred EEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEE
Q 000173 1445 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1524 (1935)
Q Consensus 1445 lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~I 1524 (1935)
||+|+...+||.. ...++++|++|.|+|+++.++|+||.+.+ ++.|+||.|++++.++.++.+.|++||.|+|+|
T Consensus 441 ls~k~~~~~p~~~----~~~~~~~G~vV~G~V~~v~~~G~fV~l~~-gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V 515 (565)
T PRK06299 441 LGIKQLEEDPFEE----FAKKHKKGSIVTGTVTEVKDKGAFVELED-GVEGLIRASELSRDRVEDATEVLKVGDEVEAKV 515 (565)
T ss_pred EEEehhhcCchhH----HHhhcCCCCEEEEEEEEEecCceEEecCC-CcEEEEEHHHhcchhccCccccCCCCCEEEEEE
Confidence 9999998877643 25678999999999999999999999986 899999999999999999999999999999999
Q ss_pred EEEecCCCeeEEecccccc
Q 000173 1525 LKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1525 l~id~~~~ri~lslK~~~~ 1543 (1935)
+++|++++||+||+|++..
T Consensus 516 ~~vd~~~~~i~LS~k~~~~ 534 (565)
T PRK06299 516 INIDRKNRRISLSIKALDE 534 (565)
T ss_pred EEEccccCEEEEEeeehhh
Confidence 9999999999999998754
|
|
| >TIGR00717 rpsA ribosomal protein S1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-53 Score=546.11 Aligned_cols=502 Identities=20% Similarity=0.297 Sum_probs=418.4
Q ss_pred cccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeccCCCCcccchhhhhhhcc
Q 000173 966 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045 (1935)
Q Consensus 966 ~~l~~G~~v~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~l~L~~~~~~ 1045 (1935)
.++++|+.+.|+|..+++++++|+| +++..|++|.+++.. +...|++||.|.+.|..++ +..+++.|+.+...
T Consensus 14 ~~~~~G~~v~g~V~~i~~~~~~v~~--g~k~~g~i~~~E~~~---~~~~~~vGd~i~~~V~~~~--~~~g~i~lS~~~~~ 86 (516)
T TIGR00717 14 EETRPGSIVKGTVVAINKDTVFVDV--GLKSEGRIPKEEFLD---APLEIQVGDEVEVYLDRVE--DRFGETVLSREKAQ 86 (516)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEc--CCCcEEEEEHHHhcC---CccCCCCCCEEEEEEEEEe--CCCCcEEEEHHHhh
Confidence 3588999999999999999999999 899999999999852 2267999999999999875 45677666544321
Q ss_pred ccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEeeeccCCccchhhccccCCCCCCEEEEEEEeee
Q 000173 1046 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125 (1935)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~G~~v~~~V~~vk~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~ 1125 (1935)
. ...|......+..|++++|+|.++.+.|+.|+++ +..|+++.+++.+... .+ ....+|++++|+|+.++
T Consensus 87 ~----~~~~~~l~~a~~~g~~v~g~V~~~~~~g~~V~i~-g~~~flP~s~~~~~~~---~~--~~~~vG~~i~~~v~~~~ 156 (516)
T TIGR00717 87 R----HELWIKLEKAYEEGSIVEGKIVGKVKGGFIVDLN-GVEAFLPGSQVDVKPI---KD--LDSLIGKTLKFKIIKLD 156 (516)
T ss_pred h----hHHHHHHHHHhhCCCeEEEEEEEEECCEEEEEEC-CEEEEEeHHHhcCccc---Cc--hhhhCCCEEEEEEEEEE
Confidence 1 1123333356789999999999999999999998 8899999999854321 11 24579999999999998
Q ss_pred cCCCCCCcceEEEEeccccccccccCCccccccccCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCcchhh
Q 000173 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205 (1935)
Q Consensus 1126 ~~~~~~~~~~~elS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~~~~~ 1205 (1935)
.+ ...+.||+|+.+-..........++. +++|+.++|+|.++.++++||+++ +++|++|.++++|.. ..+
T Consensus 157 ~~-----~~~iv~Srk~~l~~~~~~~~~~~~~~--l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~--~~~ 226 (516)
T TIGR00717 157 QK-----RNNIVVSRRAYLEEERSQAREELLEN--LKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKR--VKH 226 (516)
T ss_pred CC-----CCcEEEEHHHHHHHHHHHHHHHHHHh--ccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCC--CCC
Confidence 42 23488999875433211000112333 699999999999999999999996 799999999999864 456
Q ss_pred ccccCCCCCEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEeCCce
Q 000173 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285 (1935)
Q Consensus 1206 ~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~ 1285 (1935)
+.+.|++|+.+.|+|+.+|.+++++.||++... .++|......++ +|+++.|+|+++.+. |+||++++++
T Consensus 227 ~~~~~~vG~~v~v~Vl~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~i~~g~V~~v~~~--G~fV~l~~~v 296 (516)
T TIGR00717 227 PSEYVKVGQEVKVKVIKFDKEKGRISLSLKQLG---EDPWEAIEKKFP-----VGDKITGRVTNLTDY--GVFVEIEEGI 296 (516)
T ss_pred HHHhccCCCEEEEEEEEEECCCCcEEEEEEecc---hhHHHHHHhhcc-----CCCEEEEEEEEeeCC--cEEEEeCCCC
Confidence 777899999999999999999999999998763 356765444455 999999999999999 9999999999
Q ss_pred EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCceEEEEeecccccCCCCCCCCCCCCCCCC
Q 000173 1286 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1365 (1935)
Q Consensus 1286 ~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~~i~lSlr~s~~~~~~~~~~~~~~~~~~ 1365 (1935)
.|++|++|++++... .+|...|++|+.|+|+|+++|.+ ++++.||+|.+.
T Consensus 297 ~g~v~~sels~~~~~----------~~~~~~~~vG~~v~v~V~~id~~---~~~i~lS~k~~~----------------- 346 (516)
T TIGR00717 297 EGLVHVSEMSWVKKN----------SHPSKVVKKGDEVEVMILDIDPE---RRRLSLGLKQCK----------------- 346 (516)
T ss_pred EEEEEHHHcCCcccc----------CCHHHhccCCCEEEEEEEEEcCC---CCEEEEEehhcc-----------------
Confidence 999999999754211 12556789999999999999986 579999999875
Q ss_pred CccchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-CCccccCCCCcEEEEEEEEEeCCCCEEE
Q 000173 1366 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1935)
Q Consensus 1366 ~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~-~~~~~~f~~G~~V~~kVl~vd~~~~ri~ 1444 (1935)
.+++....+++++|++++|+|++++++|+||+|+++++|+||+++++|.+. .++...|++|+.|.|+|+++|+++++|.
T Consensus 347 ~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~glv~~s~ls~~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ 426 (516)
T TIGR00717 347 ANPWEQFEEKHPVGDRVTGKIKKITDFGAFVELEGGIDGLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRIS 426 (516)
T ss_pred cCcHHHHHHhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHCcCcccCCCHhHccCCCCEEEEEEEEEeCcCCEEE
Confidence 223555566789999999999999999999999999999999999999764 4677899999999999999999999999
Q ss_pred EEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEE
Q 000173 1445 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1524 (1935)
Q Consensus 1445 lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~I 1524 (1935)
||+|++..+||.. ...++++|+++.|+|+++++||+||.|.+ ++.||||.|++++++++++.+.|++||.|+++|
T Consensus 427 ls~K~~~~~p~~~----~~~~~~~G~~v~g~V~~v~~~G~fV~l~~-~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V 501 (516)
T TIGR00717 427 LGVKQLTENPWEK----FAAKYKVGSVVKGKVTEIKDFGAFVELPG-GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKV 501 (516)
T ss_pred EeeccccCCchhh----hhhccCcceEEEEEEEEEecceEEEEcCC-CeEEEEEHHHcCccccccccccCCCCCEEEEEE
Confidence 9999988877633 24678999999999999999999999986 799999999999999999999999999999999
Q ss_pred EEEecCCCeeEEecc
Q 000173 1525 LKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1525 l~id~~~~ri~lslK 1539 (1935)
+++|++++||+||+|
T Consensus 502 ~~id~~~~~i~ls~k 516 (516)
T TIGR00717 502 VDIDKKNRKVSLSVK 516 (516)
T ss_pred EEEeCCCCEEEEEEC
Confidence 999999999999987
|
This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned. |
| >PRK13806 rpsA 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=502.30 Aligned_cols=418 Identities=19% Similarity=0.283 Sum_probs=357.5
Q ss_pred CCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEeeeccCCccchhhccccCCCCCCEEEEEEEeeecCCCCCCcceEEEE
Q 000173 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1139 (1935)
Q Consensus 1060 ~~~~G~~v~~~V~~vk~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~~~~~~~~elS 1139 (1935)
.+.+|++|+|+|++|.+.++.|+++.+..|+|+.+|+.+.+.+ ..+++|++|+|+|++++. ..+.||
T Consensus 31 ~~~~G~~v~G~V~~v~~~~v~Vdig~k~eg~ip~~e~~~~~~~------~~~~~G~~i~~~Vi~~~~-------~~~~lS 97 (491)
T PRK13806 31 ELRVGDKITGTVIAITEDSVFVDTGSKVDGVVDRAELLDADGE------LTVAVGDEVELYVVSVNG-------QEIRLS 97 (491)
T ss_pred cCCCCCEEEEEEEEEECCEEEEEECCCcEEEEEHHHhcCcccc------ccccCCCEEEEEEEEEcC-------CEEEEE
Confidence 4889999999999999999999999999999999999754321 258999999999999861 248888
Q ss_pred eccccccccccCCccccccccCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCcchhhccccCCCCCEEEEE
Q 000173 1140 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219 (1935)
Q Consensus 1140 ~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~ 1219 (1935)
.+... ... ...+.+ .++.|+.|+|+|.++.++|++|++. +++|++|++++++.. ..++.. + +|+.+.++
T Consensus 98 ~~~~~-~~~----~~~l~~-~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~--~~~~~~-~-vG~~i~~~ 166 (491)
T PRK13806 98 KALSG-QGG----AAMLEE-AYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRY--VEDPES-Y-VGQTFQFL 166 (491)
T ss_pred hHHhh-hhh----HHHHHH-HHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhcccc--CCChHH-c-CCCeEEEE
Confidence 66321 111 111223 3789999999999999999999997 899999999988753 233333 3 99999999
Q ss_pred EEEEeCCCcEEEEEecccccCC-CCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccc
Q 000173 1220 VLSINKEKKLLRLVLRPFQDGI-SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298 (1935)
Q Consensus 1220 V~~~d~~~~~~~Ls~~~~~~~~-~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~ 1298 (1935)
|+++|.+++.+.||++...... ...|...+..++ +|+++.|+|+++.++ |+||+|++++.|+||++|+++++
T Consensus 167 V~~id~~~~~v~lSrk~~~~~~~~~~~~~~~~~l~-----~G~iv~G~V~~v~~~--G~fV~l~~gv~g~v~~sels~~~ 239 (491)
T PRK13806 167 ITRVEENGRNIVVSRRALLEREQKEALEAFMETVK-----EGDVVEGTVTRLAPF--GAFVELAPGVEGMVHISELSWSR 239 (491)
T ss_pred EEEEECCCCeEEEEeehhhhhhhHHHHHHHHhhCC-----CCCEEEEEEEEEeCC--eEEEEcCCCcEEEEEHHHCCCcc
Confidence 9999999999999998764322 234443334444 999999999999998 99999998999999999999888
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCC-ceEEEEeecccccCCCCCCCCCCCCCCCCCccchhhhccCC
Q 000173 1299 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG-TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377 (1935)
Q Consensus 1299 ~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g-~~~i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk 1377 (1935)
..+ |...|++|+.|+|+|+++|.+.++ .+++.||+|+.. .++|.....+++
T Consensus 240 ~~~-----------~~~~~~vGd~i~vkVl~id~~~~~~~~ri~lS~K~~~-----------------~~p~~~~~~~~~ 291 (491)
T PRK13806 240 VQK-----------ADEAVSVGDTVRVKVLGIERAKKGKGLRISLSIKQAG-----------------GDPWDTVGDRLK 291 (491)
T ss_pred ccC-----------hhHhcCCCCEEEEEEEEEecccCCcceEEEEEehhhh-----------------cccchhhhccCC
Confidence 776 778899999999999999986321 158999999885 234555567899
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCC-cccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccc
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd-~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~ 1456 (1935)
+|+++.|+|+++.++|+||+++++++|+||+++|+| .++.+|.+.|++||.|+++|+++|+++++|.||+|+...+||.
T Consensus 292 ~G~~v~G~V~~v~~~G~fV~l~~gv~Glvh~sels~~~~~~~~~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~ 371 (491)
T PRK13806 292 AGDKVTGKVVRLAPFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWA 371 (491)
T ss_pred CCCEEEEEEEEEeCceEEEEeCCCcEEEEEHHHcCcccccCCHHHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhH
Confidence 999999999999999999999999999999999999 4778899999999999999999999999999999999988875
Q ss_pred cccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEE
Q 000173 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1935)
Q Consensus 1457 ~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~l 1536 (1935)
.. ..++++|++|.|+|+++.+||+||+|.+ +++||||+|++++.+..++.+.|++||.|+|+|+++|++++||+|
T Consensus 372 ~~----~~~~~vG~~v~G~V~~i~~~G~FV~l~~-gv~Gli~~se~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~L 446 (491)
T PRK13806 372 DV----AERFAPGTTVTGTVEKRAQFGLFVNLAP-GVTGLLPASVISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISL 446 (491)
T ss_pred Hh----hhhCCCCCEEEEEEEEEecCceEEEcCC-CcEEEEEHHHcCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEE
Confidence 43 5689999999999999999999999987 899999999999999988999999999999999999999999999
Q ss_pred ecccc
Q 000173 1537 GMKSS 1541 (1935)
Q Consensus 1537 slK~~ 1541 (1935)
|+|..
T Consensus 447 s~~~~ 451 (491)
T PRK13806 447 APAGA 451 (491)
T ss_pred Eeehh
Confidence 99963
|
|
| >PRK13806 rpsA 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=486.53 Aligned_cols=411 Identities=20% Similarity=0.286 Sum_probs=354.7
Q ss_pred CCCCCCeEEeEEEEEEECCcceEEEcCCCCCccceEeeccccchHHHHhhhccccCCCEEEEEEEEEEecCCeEEEEech
Q 000173 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483 (1935)
Q Consensus 404 ~~~~G~iv~~~~V~~v~~~~G~~v~l~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~k~ 483 (1935)
.+.+|++++ ++|++++.+ |++|+++.+ ..||+|.+++.+.. ....+++|++++|+|++++. +.+.+|.+.
T Consensus 31 ~~~~G~~v~-G~V~~v~~~-~v~Vdig~k---~eg~ip~~e~~~~~---~~~~~~~G~~i~~~Vi~~~~--~~~~lS~~~ 100 (491)
T PRK13806 31 ELRVGDKIT-GTVIAITED-SVFVDTGSK---VDGVVDRAELLDAD---GELTVAVGDEVELYVVSVNG--QEIRLSKAL 100 (491)
T ss_pred cCCCCCEEE-EEEEEEECC-EEEEEECCC---cEEEEEHHHhcCcc---ccccccCCCEEEEEEEEEcC--CEEEEEhHH
Confidence 488999998 689999998 999999854 38999999886421 11248999999999999874 457778553
Q ss_pred hhccccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCCeE
Q 000173 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561 (1935)
Q Consensus 484 ~~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~~i 561 (1935)
.....+....+.+.+|++|+|+|+++.++|++|++. |+.||+|.+|+++....+|+. | +|++++|+|+.+ +++++
T Consensus 101 ~~~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~~~~~~~-~-vG~~i~~~V~~id~~~~~v 177 (491)
T PRK13806 101 SGQGGAAMLEEAYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRYVEDPES-Y-VGQTFQFLITRVEENGRNI 177 (491)
T ss_pred hhhhhHHHHHHHHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhccccCCChHH-c-CCCeEEEEEEEEECCCCeE
Confidence 322333444677899999999999999999999997 899999999999876677764 4 999999999999 45799
Q ss_pred EEEEecccccchhhHHhh-hhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEE
Q 000173 562 TVTHKKTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640 (1935)
Q Consensus 562 ~ltlK~~l~~~~~~~~~~-~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rV 640 (1935)
.||+|..+.......+.. +..+++|+++.|+|+++.++|+||++++++.||+|.++++|.+..+|.+.|++||.|+|+|
T Consensus 178 ~lSrk~~~~~~~~~~~~~~~~~l~~G~iv~G~V~~v~~~G~fV~l~~gv~g~v~~sels~~~~~~~~~~~~vGd~i~vkV 257 (491)
T PRK13806 178 VVSRRALLEREQKEALEAFMETVKEGDVVEGTVTRLAPFGAFVELAPGVEGMVHISELSWSRVQKADEAVSVGDTVRVKV 257 (491)
T ss_pred EEEeehhhhhhhHHHHHHHHhhCCCCCEEEEEEEEEeCCeEEEEcCCCcEEEEEHHHCCCccccChhHhcCCCCEEEEEE
Confidence 999998876544444444 4457899999999999999999999988999999999999998889999999999999999
Q ss_pred EEEeCCC----CEEEEEEeeCCC-CCcc-ccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCcccccccc
Q 000173 641 MSSIPAS----RRINLSFMMKPT-RVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714 (1935)
Q Consensus 641 l~~d~~~----~ri~lS~k~~~~-~~~~-~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~ 714 (1935)
+++|+++ +|+.||+++... +|.. ...+++|++++|+|+.++++|+||++ .++++|+||.++|+|... ....
T Consensus 258 l~id~~~~~~~~ri~lS~K~~~~~p~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l--~~gv~Glvh~sels~~~~-~~~~ 334 (491)
T PRK13806 258 LGIERAKKGKGLRISLSIKQAGGDPWDTVGDRLKAGDKVTGKVVRLAPFGAFVEI--LPGIEGLVHVSEMSWTRR-VNKP 334 (491)
T ss_pred EEEecccCCcceEEEEEehhhhcccchhhhccCCCCCEEEEEEEEEeCceEEEEe--CCCcEEEEEHHHcCcccc-cCCH
Confidence 9999987 489999997633 5643 36789999999999999999999999 779999999999997321 1224
Q ss_pred cccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCc
Q 000173 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793 (1935)
Q Consensus 715 ~~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ 793 (1935)
.+.+++||.|+ +++.+|.+++++.||+|+...++|.... +++++|+.++|+|+++++||+||++.+|+.||||+|+
T Consensus 335 ~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~~~~---~~~~vG~~v~G~V~~i~~~G~FV~l~~gv~Gli~~se 411 (491)
T PRK13806 335 EDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWADVA---ERFAPGTTVTGTVEKRAQFGLFVNLAPGVTGLLPASV 411 (491)
T ss_pred HHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhHHhh---hhCCCCCEEEEEEEEEecCceEEEcCCCcEEEEEHHH
Confidence 56899999999 8999999999999999999999998754 4688999999999999999999999999999999999
Q ss_pred cCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000173 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1935)
Q Consensus 794 ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~ 833 (1935)
+++.+..++.+.|++||.|+|+|+++|++++|+.||++..
T Consensus 412 ~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~Ls~~~~ 451 (491)
T PRK13806 412 ISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLAPAGA 451 (491)
T ss_pred cCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEEEeehh
Confidence 9999999999999999999999999999999999999965
|
|
| >PRK07899 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=430.22 Aligned_cols=333 Identities=27% Similarity=0.390 Sum_probs=292.1
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCcchhhccccCCCCCEEEEEEEEEeCCCcEEEEEecccccC
Q 000173 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240 (1935)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~~ 1240 (1935)
+++|++|+|+|.++.++++||+|++.++|+||..++++.. ..++.+.|++|+.|+|.|++++++++++.||++.+..
T Consensus 33 ~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~--~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~- 109 (486)
T PRK07899 33 FNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKH--DVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY- 109 (486)
T ss_pred CCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccc--cCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc-
Confidence 6999999999999999999999999999999999999864 3467788999999999999999999999999998642
Q ss_pred CCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCC
Q 000173 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320 (1935)
Q Consensus 1241 ~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G 1320 (1935)
..+|....+.++ .|++++|+|+++.++ |++|++ |++|++|+++++..+..+ +. .| +|
T Consensus 110 -~~~w~~ie~~~e-----~g~~V~G~V~~v~k~--G~~Vdl--Gi~gflP~Sel~~~~~~~-----------~~-~~-vG 166 (486)
T PRK07899 110 -ERAWGTIEKIKE-----KDGVVTGTVIEVVKG--GLILDI--GLRGFLPASLVEMRRVRD-----------LQ-PY-IG 166 (486)
T ss_pred -cchHHHHHHHhc-----CCCEEEEEEEEEECC--eEEEEE--CCEEEEEhhHhcccccCC-----------hh-hc-CC
Confidence 345654444434 899999999999998 999999 589999999997655443 32 23 89
Q ss_pred CEEEEEEEEEecCCCCceEEEEeecccccCCCCCCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEeeceEEEEeCC
Q 000173 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400 (1935)
Q Consensus 1321 ~~v~~~Vl~vd~~~~g~~~i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~ 1400 (1935)
+.|+|+|+++|++ ++++.||+|... ... ...++...+.++++|+++.|+|++++++|+||+|+
T Consensus 167 q~V~vkVleid~~---~~~ivLSrr~~l-----~~~--------~~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdlg- 229 (486)
T PRK07899 167 QEIEAKIIELDKN---RNNVVLSRRAWL-----EQT--------QSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLG- 229 (486)
T ss_pred CEEEEEEEEEECC---CCEEEEEhHHHH-----Hhh--------hHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-
Confidence 9999999999986 579999999764 100 01234455678999999999999999999999997
Q ss_pred CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEe
Q 000173 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1480 (1935)
Q Consensus 1401 ~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~ 1480 (1935)
+++|+||+++|+|.++.+|.+.|++||.|+++|+++|++++||.||+|+...+||... ...+++|+++.|+|+++.
T Consensus 230 gv~Glv~~Sels~~~v~~~~~~~kvGd~V~vkVl~iD~e~~rI~LSlK~~~~dPw~~~----~~~~~vG~vv~G~V~~I~ 305 (486)
T PRK07899 230 GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQF----ARTHAIGQIVPGKVTKLV 305 (486)
T ss_pred CEEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeeccccchhhh----HHhcCCCCEEEEEEEEEe
Confidence 7999999999999999999999999999999999999999999999999998887432 446889999999999999
Q ss_pred eceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1481 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1481 ~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
+||+||+|.+ ++.||||+|++++.++.++.+.|++||.|+|+|+++|++++||+||+|+.
T Consensus 306 ~fGvFVeL~~-gieGLvh~SeLs~~~v~~~~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~ 365 (486)
T PRK07899 306 PFGAFVRVEE-GIEGLVHISELAERHVEVPEQVVQVGDEVFVKVIDIDLERRRISLSLKQA 365 (486)
T ss_pred ccEEEEEeCC-CcEEEEEHHHcCcccccCccceeCCCCEEEEEEEEEECCCCEEEEEEEEc
Confidence 9999999986 79999999999999998899999999999999999999999999999985
|
|
| >PRK07899 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=422.84 Aligned_cols=328 Identities=21% Similarity=0.264 Sum_probs=290.5
Q ss_pred cccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEecccc
Q 000173 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570 (1935)
Q Consensus 493 ~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~~i~ltlK~~l~ 570 (1935)
+..+++|++|+|+|++++++|++|+++.+++|+||..|+++.+..+|++.|++|++|+|+|+.+ ..+++.||+|+...
T Consensus 30 ~~~~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~ 109 (486)
T PRK07899 30 IKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY 109 (486)
T ss_pred HhcCCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccccCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc
Confidence 5669999999999999999999999988999999999999988889999999999999999999 35789999998654
Q ss_pred cchhhHHhhhhhc-CCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCE
Q 000173 571 KSKLAILSSYAEA-TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649 (1935)
Q Consensus 571 ~~~~~~~~~~~~~-~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~r 649 (1935)
. ..|..++++ +.|+++.|+|+++.++|+||++ |++||+|.|++++.++.++.. .+||+|+|+|+++|+++++
T Consensus 110 ~---~~w~~ie~~~e~g~~V~G~V~~v~k~G~~Vdl--Gi~gflP~Sel~~~~~~~~~~--~vGq~V~vkVleid~~~~~ 182 (486)
T PRK07899 110 E---RAWGTIEKIKEKDGVVTGTVIEVVKGGLILDI--GLRGFLPASLVEMRRVRDLQP--YIGQEIEAKIIELDKNRNN 182 (486)
T ss_pred c---chHHHHHHHhcCCCEEEEEEEEEECCeEEEEE--CCEEEEEhhHhcccccCChhh--cCCCEEEEEEEEEECCCCE
Confidence 3 356777776 4799999999999999999999 699999999999876666654 4999999999999999999
Q ss_pred EEEEEeeCCC-----CC-ccccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCcccccccccccccCCCe
Q 000173 650 INLSFMMKPT-----RV-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723 (1935)
Q Consensus 650 i~lS~k~~~~-----~~-~~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~ 723 (1935)
+.||++.... ++ .....+++|++++|+|++++++|+||++ ++++|+||.++|+|.... .+.+.|++||+
T Consensus 183 ivLSrr~~l~~~~~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdl---ggv~Glv~~Sels~~~v~--~~~~~~kvGd~ 257 (486)
T PRK07899 183 VVLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHID--HPSEVVEVGQE 257 (486)
T ss_pred EEEEhHHHHHhhhHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHCCCcccC--CHHHhcCCCCE
Confidence 9999984311 11 1235788999999999999999999999 469999999999985432 23467899999
Q ss_pred Ee-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCc
Q 000173 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802 (1935)
Q Consensus 724 l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~ 802 (1935)
|+ +++.+|+++++|.||+|+...++|.... ..+++|+++.|+|++++++|+||++.+|+.||+|.+++++.++.++
T Consensus 258 V~vkVl~iD~e~~rI~LSlK~~~~dPw~~~~---~~~~vG~vv~G~V~~I~~fGvFVeL~~gieGLvh~SeLs~~~v~~~ 334 (486)
T PRK07899 258 VTVEVLDVDMDRERVSLSLKATQEDPWQQFA---RTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVP 334 (486)
T ss_pred EEEEEEEEECCCCEEEEEEeeccccchhhhH---HhcCCCCEEEEEEEEEeccEEEEEeCCCcEEEEEHHHcCcccccCc
Confidence 99 8999999999999999999999986533 3367899999999999999999999999999999999999999899
Q ss_pred ccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 803 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 803 ~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
.+.|++||+|+|+|+++|++++|+.||+|+...
T Consensus 335 ~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~~~ 367 (486)
T PRK07899 335 EQVVQVGDEVFVKVIDIDLERRRISLSLKQANE 367 (486)
T ss_pred cceeCCCCEEEEEEEEEECCCCEEEEEEEEccc
Confidence 999999999999999999999999999998865
|
|
| >PRK06676 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=407.31 Aligned_cols=335 Identities=24% Similarity=0.306 Sum_probs=293.5
Q ss_pred cccccccccCCCCCEEEEEEEEEecCceEEEe-CCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCCeEEE
Q 000173 487 EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITV 563 (1935)
Q Consensus 487 ~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l-~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~~i~l 563 (1935)
++...++.++++|++|+|+|++++++|++|++ +++++|+||..|+++.+..+|...|++|++|+|+|+.+ +++++.|
T Consensus 6 ~~~~~~~~~~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~~~~~~~~~~vGd~v~~~V~~v~~~~~~i~l 85 (390)
T PRK06676 6 EESLNSVKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDELEVYVLKVEDGEGNLLL 85 (390)
T ss_pred HHHhhhhhcccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhccccccCcccccCCCCEEEEEEEEEECCCCCEEE
Confidence 34455788999999999999999999999999 77999999999999988889999999999999999999 4567999
Q ss_pred EEecccccchhhHHhhhhh-cCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEE
Q 000173 564 THKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1935)
Q Consensus 564 tlK~~l~~~~~~~~~~~~~-~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~ 642 (1935)
|+|+.... +.|..+.+ .++|+++.|+|+++.++|+||+| +|++||+|.+++++....++.. + +||++.|+|++
T Consensus 86 S~k~~~~~---~~~~~~~~~~~~G~~v~g~V~~v~~~G~~V~~-~G~~gflp~~el~~~~~~~~~~-~-vG~~v~~~Vl~ 159 (390)
T PRK06676 86 SKRRLEAE---KAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDV-EGVRGFIPASLISTRFVEDFSD-F-KGKTLEVKIIE 159 (390)
T ss_pred EHHHhhhh---hhHHHHHHhccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcCCccCCChHH-c-CCCEEEEEEEE
Confidence 99976432 34555543 37899999999999999999999 6889999999999876666654 3 99999999999
Q ss_pred EeCCCCEEEEEEeeCCCC-----C-ccccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCcccccccccc
Q 000173 643 SIPASRRINLSFMMKPTR-----V-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716 (1935)
Q Consensus 643 ~d~~~~ri~lS~k~~~~~-----~-~~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~ 716 (1935)
+|++++++.||++..... + .....+++|++|.|+|+.++++|++|.+ ++++|+||.+|+++... ..+.+
T Consensus 160 ~d~~~~~i~lS~k~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l---~~v~g~v~~sels~~~~--~~~~~ 234 (390)
T PRK06676 160 LDPEKNRVILSRRAVVEEERAAKKEELLSSLKEGDVVEGTVARLTDFGAFVDI---GGVDGLVHISELSHERV--EKPSE 234 (390)
T ss_pred EECCCCEEEEEeHHHhhhhhhhHHHHHHhhCCCCCEEEEEEEEEecceEEEEe---CCeEEEEEHHHcCcccc--CCHHH
Confidence 999999999999864221 1 1235688999999999999999999999 46999999999998432 23456
Q ss_pred cccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccC
Q 000173 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795 (1935)
Q Consensus 717 ~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls 795 (1935)
.+++|+.|+ +++.+|++++++.||+|+.+.++|..+ ++++++|+.+.|+|++++++|+||++.+|+.||+|.++++
T Consensus 235 ~~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~~---~~~~~~G~~v~g~V~~i~~~G~fV~l~~gi~Glv~~se~~ 311 (390)
T PRK06676 235 VVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEGV---EEKLPEGDVIEGTVKRLTDFGAFVEVLPGVEGLVHISQIS 311 (390)
T ss_pred hcCCCCEEEEEEEEEeCCCCEEEEEEeecccCccccc---hhhhcCCcEEEEEEEEEeCceEEEEECCCCeEEEEhHHcC
Confidence 789999999 888999999999999999998888654 4568899999999999999999999999999999999999
Q ss_pred cccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 796 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 796 ~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
+.+..++.+.|++||.|+|+|+++|++++|+.||+++...
T Consensus 312 ~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 312 HKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred ccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 9888889999999999999999999999999999998765
|
|
| >PRK06676 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=401.00 Aligned_cols=336 Identities=26% Similarity=0.426 Sum_probs=293.8
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEE-CCCcEEEEEccccCCCCcchhhccccCCCCCEEEEEEEEEeCCCcEEEEEeccccc
Q 000173 1161 VSIGQRVTGYVYKVDNEWALLTI-SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239 (1935)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~l~v~l-~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~ 1239 (1935)
+++|+.|+|+|..+.++++||++ ++++.|++|..++++.. ..++...|++|+.|+|+|+.++.+++++.||++.+.
T Consensus 15 ~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~--~~~~~~~~~vGd~v~~~V~~v~~~~~~i~lS~k~~~- 91 (390)
T PRK06676 15 VEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDH--IEDINDVVKVGDELEVYVLKVEDGEGNLLLSKRRLE- 91 (390)
T ss_pred ccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhcccc--ccCcccccCCCCEEEEEEEEEECCCCCEEEEHHHhh-
Confidence 59999999999999999999999 88999999999998763 456777899999999999999999999999999763
Q ss_pred CCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCC
Q 000173 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319 (1935)
Q Consensus 1240 ~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~ 1319 (1935)
....|......++ +|+++.|+|+++.++ |++|+++ |+.|++|++|+++.+..+ |.. + +
T Consensus 92 -~~~~~~~~~~~~~-----~G~~v~g~V~~v~~~--G~~V~~~-G~~gflp~~el~~~~~~~-----------~~~-~-v 149 (390)
T PRK06676 92 -AEKAWDKLEEKFE-----EGEVVEVKVTEVVKG--GLVVDVE-GVRGFIPASLISTRFVED-----------FSD-F-K 149 (390)
T ss_pred -hhhhHHHHHHhcc-----CCCEEEEEEEEEECC--eEEEEEC-CEEEEEEHHHcCCccCCC-----------hHH-c-C
Confidence 2245654434444 999999999999998 9999995 679999999998877655 432 4 8
Q ss_pred CCEEEEEEEEEecCCCCceEEEEeecccccCCCCCCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEeeceEEEEeC
Q 000173 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399 (1935)
Q Consensus 1320 G~~v~~~Vl~vd~~~~g~~~i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~ 1399 (1935)
|+.+.|+|+++|++ ++++.||+|... ... ...++...+.++++|++|.|+|+++.++|+||.++
T Consensus 150 G~~v~~~Vl~~d~~---~~~i~lS~k~~~-----~~~--------~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~ 213 (390)
T PRK06676 150 GKTLEVKIIELDPE---KNRVILSRRAVV-----EEE--------RAAKKEELLSSLKEGDVVEGTVARLTDFGAFVDIG 213 (390)
T ss_pred CCEEEEEEEEEECC---CCEEEEEeHHHh-----hhh--------hhhHHHHHHhhCCCCCEEEEEEEEEecceEEEEeC
Confidence 99999999999976 579999999864 100 01233445577999999999999999999999996
Q ss_pred CCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEE
Q 000173 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1479 (1935)
Q Consensus 1400 ~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v 1479 (1935)
+++|+||+++++|.++.+|.+.|++|+.|+++|+++|++++++.||+|+...+||.. ...++++|+++.|+|+++
T Consensus 214 -~v~g~v~~sels~~~~~~~~~~~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~----~~~~~~~G~~v~g~V~~i 288 (390)
T PRK06676 214 -GVDGLVHISELSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEG----VEEKLPEGDVIEGTVKRL 288 (390)
T ss_pred -CeEEEEEHHHcCccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEeecccCcccc----chhhhcCCcEEEEEEEEE
Confidence 799999999999999999999999999999999999999999999999988777643 256899999999999999
Q ss_pred eeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1480 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1480 ~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
.+||+||++.+ ++.||||+|++++.++.++...|++||.|+|+|+++|++++||.||+|+...
T Consensus 289 ~~~G~fV~l~~-gi~Glv~~se~~~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 289 TDFGAFVEVLP-GVEGLVHISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred eCceEEEEECC-CCeEEEEhHHcCccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 99999999976 7999999999999988888899999999999999999999999999998644
|
|
| >PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=400.89 Aligned_cols=336 Identities=24% Similarity=0.404 Sum_probs=295.3
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCcchhhccccCCCCCEEEEEEEEEeCCCcEEEEEeccccc
Q 000173 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239 (1935)
Q Consensus 1160 ~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~ 1239 (1935)
.+++|+.|+|+|.++.++++||+++....|++|..+++++. ..++.+.|++|+.++|+|++++.+++++.||++.+..
T Consensus 299 ~l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~--~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~~~~ 376 (647)
T PRK00087 299 QIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDE--ISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKEADR 376 (647)
T ss_pred hccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccc--cCChhhccCCCCEEEEEEEEEECCCCcEEEEeehhcc
Confidence 36999999999999999999999999999999999998763 4567888999999999999999999999999998742
Q ss_pred CCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCC
Q 000173 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319 (1935)
Q Consensus 1240 ~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~ 1319 (1935)
...|....+.++ +|+++.|+|+++.++ |++|+++. ++|++|.+|+++.+..+ |. .+ +
T Consensus 377 --~~~~~~l~~~~~-----~G~iv~g~V~~v~~~--G~~V~lgg-i~gfiP~sel~~~~~~d-----------~~-~~-v 433 (647)
T PRK00087 377 --EKAWKELEEAFE-----NGEPVKGKVKEVVKG--GLLVDYGG-VRAFLPASHVELGYVED-----------LS-EY-K 433 (647)
T ss_pred --hhHHHHHHHHhh-----CCCEEEEEEEEEECC--eEEEEECC-EEEEEEHHHhCccccCC-----------HH-Hh-C
Confidence 234554444444 999999999999998 99999984 99999999998887665 43 23 8
Q ss_pred CCEEEEEEEEEecCCCCceE-EEEeecccccCCCCCCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEeeceEEEEe
Q 000173 1320 GQFVKCKVLEISRTVRGTFH-VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398 (1935)
Q Consensus 1320 G~~v~~~Vl~vd~~~~g~~~-i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l 1398 (1935)
|+.+.|+|+++|++ +++ +.+|+|...... ...++...++++++|+++.|+|+++.++|+||++
T Consensus 434 G~~v~v~Vl~vd~e---~~~~l~lS~k~~~~~~-------------~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l 497 (647)
T PRK00087 434 GQELEVKIIEFNRK---RRKKVVLSRKAILEEE-------------KEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI 497 (647)
T ss_pred CCEEEEEEEEEEcC---CCcEEEEEeHHHhhhh-------------hhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE
Confidence 99999999999986 456 999998874000 0123455667899999999999999999999999
Q ss_pred CCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEE
Q 000173 1399 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1478 (1935)
Q Consensus 1399 ~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~ 1478 (1935)
++++|++|+++++|.++.+|.+.|++||.|.++|+++|++++++.||+|+...+||.. ...++++|+++.|+|++
T Consensus 498 -~gv~Gll~~sels~~~~~~~~~~~~vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~----~~~~~~~G~~v~g~V~~ 572 (647)
T PRK00087 498 -GGVDGLLHVSEISWGRVEKPSDVLKVGDEIKVYILDIDKENKKLSLSLKKLLPDPWEN----VEEKYPVGSIVLGKVVR 572 (647)
T ss_pred -CCEEEEEEHHHcCccccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEeeccccChhhh----hhhhccCCeEEEEEEEE
Confidence 6999999999999999999999999999999999999999999999999998887743 24678999999999999
Q ss_pred EeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccccc
Q 000173 1479 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1542 (1935)
Q Consensus 1479 v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~ 1542 (1935)
+.+||+||+|.+ ++.||||++++++.++.++.+.|++||.|+|+|+++|++++||.||+|...
T Consensus 573 i~~~G~fV~l~~-~i~Gli~~sel~~~~~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~ 635 (647)
T PRK00087 573 IAPFGAFVELEP-GVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVE 635 (647)
T ss_pred EECCeEEEEECC-CCEEEEEhhhcCccccCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeecc
Confidence 999999999976 799999999999999999999999999999999999999999999999853
|
|
| >PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=396.42 Aligned_cols=332 Identities=23% Similarity=0.284 Sum_probs=292.1
Q ss_pred ccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEec
Q 000173 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567 (1935)
Q Consensus 490 ~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~~i~ltlK~ 567 (1935)
....+.+.+|++|+|+|.+++++|++|+++++.+|++|..|+++....+|.+.|++|++|+|+|+.+ ..+++.||+|+
T Consensus 294 ~~~~~~l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~ 373 (647)
T PRK00087 294 NELEKQIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDEISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKE 373 (647)
T ss_pred HHHHhhccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccccCChhhccCCCCEEEEEEEEEECCCCcEEEEeeh
Confidence 4567789999999999999999999999998899999999999988889999999999999999999 46799999998
Q ss_pred ccccchhhHHhhhhh-cCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCC
Q 000173 568 TLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646 (1935)
Q Consensus 568 ~l~~~~~~~~~~~~~-~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~ 646 (1935)
..... .|..+.+ +++|+++.|+|+++.++|+||+++ +++||+|.+++++....++.. + +|+++.|+|+++|++
T Consensus 374 ~~~~~---~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~lg-gi~gfiP~sel~~~~~~d~~~-~-vG~~v~v~Vl~vd~e 447 (647)
T PRK00087 374 ADREK---AWKELEEAFENGEPVKGKVKEVVKGGLLVDYG-GVRAFLPASHVELGYVEDLSE-Y-KGQELEVKIIEFNRK 447 (647)
T ss_pred hcchh---HHHHHHHHhhCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHhCccccCCHHH-h-CCCEEEEEEEEEEcC
Confidence 76542 2444333 478999999999999999999995 699999999998876656654 3 999999999999999
Q ss_pred CCE-EEEEEeeCCC-----CC-ccccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCccccccccccccc
Q 000173 647 SRR-INLSFMMKPT-----RV-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719 (1935)
Q Consensus 647 ~~r-i~lS~k~~~~-----~~-~~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~~~k 719 (1935)
+++ +.+|++.... ++ ...+.+++|+++.|+|.++.++|++|.+ ++++|+||.++++|.+.. .+.+.|+
T Consensus 448 ~~~~l~lS~k~~~~~~~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l---~gv~Gll~~sels~~~~~--~~~~~~~ 522 (647)
T PRK00087 448 RRKKVVLSRKAILEEEKEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI---GGVDGLLHVSEISWGRVE--KPSDVLK 522 (647)
T ss_pred CCcEEEEEeHHHhhhhhhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE---CCEEEEEEHHHcCccccC--CHHHhcC
Confidence 998 9999986421 11 1235678999999999999999999999 579999999999985532 2456799
Q ss_pred CCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCccc
Q 000173 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798 (1935)
Q Consensus 720 ~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~ 798 (1935)
+|+.++ +++.+|+.++++.||+|+.+.++|..+. +++++|+.+.|.|++++++|+||++.+++.||+|.+++++.+
T Consensus 523 vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~~~---~~~~~G~~v~g~V~~i~~~G~fV~l~~~i~Gli~~sel~~~~ 599 (647)
T PRK00087 523 VGDEIKVYILDIDKENKKLSLSLKKLLPDPWENVE---EKYPVGSIVLGKVVRIAPFGAFVELEPGVDGLVHISQISWKR 599 (647)
T ss_pred CCCEEEEEEEEEECCCCEEEEEeeccccChhhhhh---hhccCCeEEEEEEEEEECCeEEEEECCCCEEEEEhhhcCccc
Confidence 999999 7899999999999999999999987654 457899999999999999999999999999999999999999
Q ss_pred ccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 799 ~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
+.++.+.|++||.|+|+|+++|++++|+.||+|....
T Consensus 600 ~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~~ 636 (647)
T PRK00087 600 IDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVEE 636 (647)
T ss_pred cCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 9999999999999999999999999999999997654
|
|
| >PRK07400 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=318.88 Aligned_cols=240 Identities=23% Similarity=0.384 Sum_probs=213.1
Q ss_pred ccCCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCC
Q 000173 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336 (1935)
Q Consensus 1257 l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g 1336 (1935)
+++|+++.|+|+++.+. |++|+||.+..|++|++|+++++..+ |.+.|++|+.|+|+|++++.+
T Consensus 29 ~~~G~iv~G~V~~i~~~--g~~Vdig~k~~g~lp~sEis~~~~~~-----------~~~~~~~G~~v~~~Vi~~~~~--- 92 (318)
T PRK07400 29 FKPGDIVNGTVFSLEPR--GALIDIGAKTAAFMPIQEMSINRVEG-----------PEEVLQPNETREFFILSDENE--- 92 (318)
T ss_pred cCCCCEEEEEEEEEECC--EEEEEECCCeEEEEEHHHhccccccC-----------HHHccCCCCEEEEEEEEEeCC---
Confidence 56999999999999998 99999999999999999999988776 778899999999999999875
Q ss_pred ceEEEEeecccccCCCCCCCCCCCCCCCCCccchhhhccC-CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc
Q 000173 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL-SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415 (1935)
Q Consensus 1337 ~~~i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~ 1415 (1935)
++++.||+|... ....|..+.++ +.|++|+|+|++++++|+||+++ +++||||++++||.+
T Consensus 93 ~~~i~lS~k~~~-----------------~~~~w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l~-Gv~gfip~s~ls~~~ 154 (318)
T PRK07400 93 DGQLTLSIRRIE-----------------YMRAWERVRQLQKEDATVRSEVFATNRGGALVRIE-GLRGFIPGSHISTRK 154 (318)
T ss_pred CCeEEEehhhhh-----------------hhhHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCccC
Confidence 569999999874 01124455555 46999999999999999999996 999999999999975
Q ss_pred cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeE
Q 000173 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1495 (1935)
Q Consensus 1416 ~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~G 1495 (1935)
.+ +.+ +|+.+.++|+++|++++++.||+|...... .+.++++|+++.|+|+++.+||+||.+. ++.|
T Consensus 155 ~~---~~~-vG~~i~~kVl~id~~~~~i~lS~K~~~~~~-------~~~~~k~G~vv~G~V~~I~~~G~fV~i~--gv~G 221 (318)
T PRK07400 155 PK---EEL-VGEELPLKFLEVDEERNRLVLSHRRALVER-------KMNRLEVGEVVVGTVRGIKPYGAFIDIG--GVSG 221 (318)
T ss_pred Cc---ccc-CCCEEEEEEEEEEcccCEEEEEhhHhhhhh-------hhccCCCCCEEEEEEEEEECCeEEEEEC--CEEE
Confidence 43 334 999999999999999999999999766432 3678999999999999999999999994 6999
Q ss_pred EeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1496 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1496 l~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
|||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|....
T Consensus 222 llhisels~~~~~~~~~~~~vGd~VkvkVl~iD~e~~rI~LS~K~l~~ 269 (318)
T PRK07400 222 LLHISEISHEHIETPHSVFNVNDEMKVMIIDLDAERGRISLSTKQLEP 269 (318)
T ss_pred EEEHHHcccccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEecccc
Confidence 999999999999999999999999999999999999999999998644
|
|
| >PRK07400 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=311.84 Aligned_cols=243 Identities=22% Similarity=0.305 Sum_probs=216.2
Q ss_pred Hhhhh-hcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEe
Q 000173 577 LSSYA-EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1935)
Q Consensus 577 ~~~~~-~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k 655 (1935)
+.+|. .+++|+++.|+|+++.++||||+|+++..||+|.+++++.++.++.+.|++|++++|+|+++|++++++.||++
T Consensus 22 le~~~~~~~~G~iv~G~V~~i~~~g~~Vdig~k~~g~lp~sEis~~~~~~~~~~~~~G~~v~~~Vi~~~~~~~~i~lS~k 101 (318)
T PRK07400 22 LDKYDYHFKPGDIVNGTVFSLEPRGALIDIGAKTAAFMPIQEMSINRVEGPEEVLQPNETREFFILSDENEDGQLTLSIR 101 (318)
T ss_pred HHhhHhhcCCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhccccccCHHHccCCCCEEEEEEEEEeCCCCeEEEehh
Confidence 34443 37899999999999999999999988899999999999988889999999999999999999999999999999
Q ss_pred eCC--CCCcccc-ccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCcccccccccccccCCCeEe-eEEEee
Q 000173 656 MKP--TRVSEDD-LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731 (1935)
Q Consensus 656 ~~~--~~~~~~~-~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~-~vl~~d 731 (1935)
... .+|.... ....|++|+|+|+.+.+.|++|.+ ++++||||.+|||+... .+. .+|+.|+ ++|.+|
T Consensus 102 ~~~~~~~w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l---~Gv~gfip~s~ls~~~~-----~~~-~vG~~i~~kVl~id 172 (318)
T PRK07400 102 RIEYMRAWERVRQLQKEDATVRSEVFATNRGGALVRI---EGLRGFIPGSHISTRKP-----KEE-LVGEELPLKFLEVD 172 (318)
T ss_pred hhhhhhHHHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHcCccCC-----ccc-cCCCEEEEEEEEEE
Confidence 753 2344433 345699999999999999999999 58999999999998532 123 4999999 899999
Q ss_pred cCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCE
Q 000173 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811 (1935)
Q Consensus 732 ~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~ 811 (1935)
++++++.||+|+.+.+. .+.++++|+++.|+|++|+++|+||++ +|+.||+|++++++.++.++.+.|++||.
T Consensus 173 ~~~~~i~lS~K~~~~~~------~~~~~k~G~vv~G~V~~I~~~G~fV~i-~gv~Gllhisels~~~~~~~~~~~~vGd~ 245 (318)
T PRK07400 173 EERNRLVLSHRRALVER------KMNRLEVGEVVVGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVFNVNDE 245 (318)
T ss_pred cccCEEEEEhhHhhhhh------hhccCCCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcccccccChhhccCCCCE
Confidence 99999999999888643 356789999999999999999999999 68999999999999999999999999999
Q ss_pred EEEEEEEeeCCCCeEEEeeccccc
Q 000173 812 VRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 812 V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
|+|+|+++|.+++|+.||+|....
T Consensus 246 VkvkVl~iD~e~~rI~LS~K~l~~ 269 (318)
T PRK07400 246 MKVMIIDLDAERGRISLSTKQLEP 269 (318)
T ss_pred EEEEEEEEeCCCCEEEEEEecccc
Confidence 999999999999999999998865
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=240.80 Aligned_cols=258 Identities=26% Similarity=0.426 Sum_probs=218.4
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHH---------------------
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL--------------------- 1725 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl--------------------- 1725 (1935)
+...++..|+|.+..+|+ ...|++|+.|++..|.+.-||.+|+||+..+...++.|++
T Consensus 189 eieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iy 267 (677)
T KOG1915|consen 189 EIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIY 267 (677)
T ss_pred HHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999888887 5789999999999998888888888888633322211111
Q ss_pred -------------------------------------------------------HHHHHHHHHHHHcCCCCHHHHHHHH
Q 000173 1726 -------------------------------------------------------NIWVAYFNLENEYGNPPEEAVVKVF 1750 (1935)
Q Consensus 1726 -------------------------------------------------------~lW~ayl~le~~~g~~~~e~a~~vf 1750 (1935)
+.|..|+.|+...| +.++.+++|
T Consensus 268 kyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g--~~~~Ire~y 345 (677)
T KOG1915|consen 268 KYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG--DKDRIRETY 345 (677)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC--CHHHHHHHH
Confidence 68999999988888 569999999
Q ss_pred HHHHhcCCCH---HHHHH-------HHHHH-HHcCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHc-CHHHHHH
Q 000173 1751 QRALQYCDPK---KVHLA-------LLGLY-ERTEQNKLADELLYKMIKKFK----HSCKVWLRRVQRLLKQ-QQEGVQA 1814 (1935)
Q Consensus 1751 erAl~~~~~~---~v~~~-------l~~i~-~~~~~~~~A~el~~~~~k~~~----~~~~vw~~~~~~l~~~-~~e~A~~ 1814 (1935)
+||+...|+. +.|.. |+-+. ....+.+.++++|+++++..| ...++|+.||.|++++ +...||+
T Consensus 346 ErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARk 425 (677)
T KOG1915|consen 346 ERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARK 425 (677)
T ss_pred HHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHH
Confidence 9999998873 44444 43322 356889999999999999877 4589999999999999 9999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000173 1815 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1894 (1935)
Q Consensus 1815 ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~ 1894 (1935)
++-+|+..+|+. +++..|..++.+.++++++|.+||+.|...|.+...|..|+.+|..+|+.++||.+|+-|+++..
T Consensus 426 iLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 426 ILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 999999999988 79999999999999999999999999999999999999999999999999999999999998432
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1895 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1895 ~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
- .-...+|+.||+||...|..+.++.+|+|-++..+
T Consensus 503 l-dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 503 L-DMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred c-ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 1 22337899999999999999999999999987543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-22 Score=228.36 Aligned_cols=245 Identities=23% Similarity=0.389 Sum_probs=218.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000173 1673 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1752 (1935)
Q Consensus 1673 ~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vfer 1752 (1935)
..||..++.+.-+...|++|++|+.+++++..||.+|+|||. ..++. ..+|+.|+.+|.... ...-|+.++.|
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALd-vd~r~----itLWlkYae~Emknk--~vNhARNv~dR 132 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALD-VDYRN----ITLWLKYAEFEMKNK--QVNHARNVWDR 132 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-ccccc----chHHHHHHHHHHhhh--hHhHHHHHHHH
Confidence 456777777888889999999999999999999999999995 44444 579999999999998 66999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1753 ALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1753 Al~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
|+...|- .++|+.|+-+.+..|+..-|+++|++-+.- ......|+.|+.|.++. ..+.||.+|+|-+-.+|+- +
T Consensus 133 Avt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w-~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v---~ 208 (677)
T KOG1915|consen 133 AVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW-EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKV---S 208 (677)
T ss_pred HHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccH---H
Confidence 9999997 599999999999999999999999999964 45788999999999999 9999999999999888655 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRT---DLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~---dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
.|++||.|+.++|+...||.+|++|+....+.. .+...||.+|..+..+++||.+|.-||. .+|..++..+|+.|.
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld-~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD-HIPKGRAEELYKKYT 287 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHH
Confidence 999999999999999999999999999887753 3799999999999999999999999998 677677779999999
Q ss_pred HHHHHcCCHHHHHHH--HHHHHHH
Q 000173 1908 EYEKSVGEEERIEYV--KQKAMEY 1929 (1935)
Q Consensus 1908 ~~E~~~G~~e~a~~v--~~rAle~ 1929 (1935)
.||+++||...++.+ ..|-++|
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHH
Confidence 999999998776643 3444444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=215.56 Aligned_cols=249 Identities=18% Similarity=0.264 Sum_probs=206.5
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..-++..|..+|+..|..-.+|++.+.|....|-.+.-..++++|+.+.|..+ .+|+.|+......| +...|+
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae-----~lwlM~ake~w~ag--dv~~ar 604 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE-----ILWLMYAKEKWKAG--DVPAAR 604 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch-----hHHHHHHHHHHhcC--CcHHHH
Confidence 55677788888888888888888888888888888888888888888887544 48888888887778 558888
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
.++.+|++++|.. .+|++...+...+.+++.|+.+|.++... .....+|+.++.++..+ +.++|++++++||+++|.
T Consensus 605 ~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~ 683 (913)
T KOG0495|consen 605 VILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD 683 (913)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 8888888888764 88888888888888888888888888764 45778888888888888 888888888888888887
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
.. ++|+..+|++.++++.+.||..|...++.+|....||..++.++.+.|..-+||.+|+|+.- -+|++. .+|..
T Consensus 684 f~--Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~-~lwle 758 (913)
T KOG0495|consen 684 FH--KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNA-LLWLE 758 (913)
T ss_pred hH--HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcc-hhHHH
Confidence 73 88888888888888888888888888888888888888888888888888888888888877 666777 78888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
-+.+|.+.|+.+.|+.+..+|++-
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888888764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=208.06 Aligned_cols=235 Identities=23% Similarity=0.281 Sum_probs=216.6
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
.+.-.+.|++++..-|.+..+|+.|+.-....|++..||.+..+|.+..|.++ .+|++-..++....+ .++|+
T Consensus 566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse-----eiwlaavKle~en~e--~eraR 638 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE-----EIWLAAVKLEFENDE--LERAR 638 (913)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH-----HHHHHHHHHhhcccc--HHHHH
Confidence 33444577888888999999999999999999999999999999999888655 499999999999985 49999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1748 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1748 ~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
.+|.+|....+...+|++.+++..-.+..++|..+++++++.||...++|+.+++.+.+. +.+.||+.|...++.+|.+
T Consensus 639 ~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 639 DLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999998
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000173 1827 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1906 (1935)
Q Consensus 1827 ~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~y 1906 (1935)
+.+|..++.++.+.|.+-+||.+|+++.-.+|++..+|...++||++.|+.+.|+.+.-+||+ -.|... .+|..-
T Consensus 719 --ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg-~LWaEa 793 (913)
T KOG0495|consen 719 --IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSG-LLWAEA 793 (913)
T ss_pred --chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccc-hhHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999998 444555 588888
Q ss_pred HHHHHHcC
Q 000173 1907 LEYEKSVG 1914 (1935)
Q Consensus 1907 l~~E~~~G 1914 (1935)
|-+|...+
T Consensus 794 I~le~~~~ 801 (913)
T KOG0495|consen 794 IWLEPRPQ 801 (913)
T ss_pred HHhccCcc
Confidence 87765543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=198.75 Aligned_cols=263 Identities=19% Similarity=0.321 Sum_probs=217.7
Q ss_pred ccCCCCcHHHHHHHHHcC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchh--------------hHHH
Q 000173 1665 EKDAPRTPDEFERLVRSS-PN---SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN--------------EKLN 1726 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~-P~---s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~--------------Ekl~ 1726 (1935)
+++...|+..|++++..+ |. -...|.+++..++...+++.|+.+.++|. ..|.+.+. ..+.
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 344788999999998654 33 37889999999999999999999999999 56655221 1248
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Q 000173 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQR 1803 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~~~e~a~~vferAl~~~~-~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~--~~~~~vw~~~~~~ 1803 (1935)
+|..|+.++..+| +.++.+.+|+|.+.+.- .-++-+.|+.+++.+.-++++...|++.+..| |...++|..|..-
T Consensus 479 iWs~y~DleEs~g--tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 479 IWSMYADLEESLG--TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 9999999999999 67999999999998754 45899999999999999999999999999887 6789999999998
Q ss_pred HHHc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH--------------------------------
Q 000173 1804 LLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR-------------------------------- 1847 (1935)
Q Consensus 1804 l~~~----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~-------------------------------- 1847 (1935)
+..+ +++.||.+|++||..||....-.+|+.||+||.+.|-..+
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 8877 9999999999999999965434789999999999886444
Q ss_pred ----HHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1848 ----GRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1921 (1935)
Q Consensus 1848 ----Ar~ife~al~~~Pk~--~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~ 1921 (1935)
.|.+|++|+++.|.. .+....|++||.+.|.+++||.+|--+-. -++|+..-.+|..|=+||.+|||.+..++
T Consensus 637 Gv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq-~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 637 GVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ-ICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred CCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh-cCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 456666668888875 34689999999999999999999998877 45555544899999999999999988887
Q ss_pred HHHHHHHHHHh
Q 000173 1922 VKQKAMEYVES 1932 (1935)
Q Consensus 1922 v~~rAle~v~~ 1932 (1935)
++. ....|++
T Consensus 716 MLR-ikRsvqa 725 (835)
T KOG2047|consen 716 MLR-IKRSVQA 725 (835)
T ss_pred HHH-HHHHHHH
Confidence 763 3344444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-16 Score=186.04 Aligned_cols=239 Identities=18% Similarity=0.250 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--------
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-------- 1758 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~-------- 1758 (1935)
.+|..|+.||...++++.||.+|++|+ ..||..-.+-.++|++|+.+|....++ +.|..+.++|+..--
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~-~V~y~~v~dLa~vw~~waemElrh~~~--~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKAT-KVPYKTVEDLAEVWCAWAEMELRHENF--EAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhh-cCCccchHHHHHHHHHHHHHHHhhhhH--HHHHHHHHhhhcCCCchhhhhhc
Confidence 455555555555555555555555555 344444333335555555555555532 555555555543210
Q ss_pred -----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1759 -----------PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1759 -----------~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
+..+|..|+++.+..|-++..+.+|.+++..--..+.+-.+||.|+..+ -++++-++|+|.+..++..
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 0145555555555555555555555555544444555555555555555 5555555555555555443
Q ss_pred ChHHHHHHHHHH-HHHcC--CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHH
Q 000173 1827 KHIKFISQTAIL-EFKNG--VADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1901 (1935)
Q Consensus 1827 ~~~~~~~~~a~l-e~~~g--~~e~Ar~ife~al~~~Pk~--~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~ 1901 (1935)
.-.++|..|..- --+.| .+|+||.+||+||..+|.. ..++..|+++|.+.|-..+|..+|+||.. ...+.++-.
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~ 623 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLD 623 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHH
Confidence 333455544432 12333 4555555555555555421 12455555555555555555555555554 344444445
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 000173 1902 LFKKYLEY-EKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1902 l~~~yl~~-E~~~G~~e~a~~v~~rAle~v 1930 (1935)
+|+.||.- +.-+|-. .-+.+|++|++.+
T Consensus 624 myni~I~kaae~yGv~-~TR~iYekaIe~L 652 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVP-RTREIYEKAIESL 652 (835)
T ss_pred HHHHHHHHHHHHhCCc-ccHHHHHHHHHhC
Confidence 55555532 2223322 2345555555543
|
|
| >COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.1e-15 Score=161.77 Aligned_cols=231 Identities=17% Similarity=0.148 Sum_probs=185.6
Q ss_pred cCCCcEEEEEEEEEecceEEEEEcCCe-EEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCCCCC
Q 000173 583 ATDRLITHGWITKIEKHGCFVRFYNGV-QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661 (1935)
Q Consensus 583 ~~~G~~~~g~V~~i~~~G~~V~~~~~v-~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~~~~ 661 (1935)
..+|++....|.+..++|+|++=.++- .-++|+++.-. +...+|+.|++-|. .| .++|+.++.+.
T Consensus 3 ~~iG~~~~l~V~~~~~~g~fL~~~~~~~~ilL~k~~~~~-------~e~evGdev~vFiY-~D-~~~rl~aTt~~----- 68 (287)
T COG2996 3 IKIGQINSLEVVEFSDFGYFLDAGEDGTTILLPKSEPEE-------DELEVGDEVTVFIY-VD-SEDRLIATTRE----- 68 (287)
T ss_pred ccccceEEEEEEEeeceeEEEecCCCceEEeccccCCcC-------CccccCcEEEEEEE-EC-CCCceeheeec-----
Confidence 368999999999999999999864332 67888887632 24779999999876 35 45678888764
Q ss_pred ccccccCCCCeEEEEEEEEe-cCcEEEEEEecCceeEEEeccccCCcccccccccccccCCCeEeeEEEeecCCCeEEEe
Q 000173 662 SEDDLVKLGSLVSGVVDVVT-PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740 (1935)
Q Consensus 662 ~~~~~~~~G~iv~g~V~~v~-~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~~vl~~d~~~~~i~ls 740 (1935)
+.+++|+.-.++|+++. ..|+||.. +=.-+-+||..+|+.... -|+++||++-.-|.+|+.+ | ++
T Consensus 69 ---p~~tvg~~g~~~Vv~v~~~lGaFlD~--Gl~KDl~vp~~elp~~~~------~wpq~Gd~l~v~l~~Dkk~-R--i~ 134 (287)
T COG2996 69 ---PKATVGEYGWLKVVEVNKDLGAFLDW--GLPKDLLVPLDELPTLKS------LWPQKGDKLLVYLYVDKKG-R--IW 134 (287)
T ss_pred ---ceEeecceeEEEEEEEcCCcceEEec--CCCcceeeehhhcccccc------cCCCCCCEEEEEEEEccCC-c--EE
Confidence 67889999999999998 67999998 546889999999985332 2789999999888999888 3 34
Q ss_pred ccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEee
Q 000173 741 AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820 (1935)
Q Consensus 741 ~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd 820 (1935)
.+...-+..+.++..+.+--.|+.++|+|+++...|.||-..++.-||+|+|+.-.+ .+.||.+++||+.+.
T Consensus 135 g~~a~~~~l~~l~~~~~~~l~nq~v~~tVYr~~~~G~fv~~e~~~~GfIh~sEr~~~--------prlG~~l~~rVi~~r 206 (287)
T COG2996 135 GTLAIEKILENLATPAYNNLKNQEVDATVYRLLESGTFVITENGYLGFIHKSERFAE--------PRLGERLTARVIGVR 206 (287)
T ss_pred EEecchhHHHhcCCccchhhhcCeeeeEEEEEeccceEEEEcCCeEEEEcchhhccc--------ccCCceEEEEEEEEc
Confidence 444444444445544333335999999999999999999999999999999988543 589999999999998
Q ss_pred CCCCeEEEeecccccCC--CCchhhHHHHHHH
Q 000173 821 SETGRITLSLKQSCCSS--TDASFMQEHFLLE 850 (1935)
Q Consensus 821 ~e~~rl~LSlk~~~~~~--~d~~~i~~~l~~~ 850 (1935)
+ +++|.||+++..... .|+++|..||...
T Consensus 207 e-Dg~lnLSl~p~~~E~l~~daq~Il~yL~~~ 237 (287)
T COG2996 207 E-DGKLNLSLRPRAHEMLDEDAQMILTYLESN 237 (287)
T ss_pred c-CCeeecccccccHHhhhhhHHHHHHHHHHc
Confidence 6 999999999987654 8899999999865
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-15 Score=175.85 Aligned_cols=179 Identities=16% Similarity=0.105 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
+-|...|+||+...|.+ ..|..|++.+...|+..+|...|.+++...++.++...+++..+.++ .++.|..+|..|+.
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 44444444444444443 44444444444444444444444444444444444444444444444 44444444444444
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHH
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1901 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~ 1901 (1935)
.+|... ....++|.++-++|++++|...|..+|+..|...|.++.....+-..|+.+.|...|+|||. ..|.-+ .
T Consensus 383 v~p~~a--aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~A-e 457 (966)
T KOG4626|consen 383 VFPEFA--AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFA-E 457 (966)
T ss_pred hChhhh--hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHH-H
Confidence 444432 34444444444444444444444444444444444444444444444444444444444444 444333 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1902 LFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1902 l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
.+.......+..|+..+|..-|+.|+
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 44444444444444444444444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-15 Score=174.97 Aligned_cols=253 Identities=13% Similarity=0.061 Sum_probs=156.7
Q ss_pred CCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc------------------hhh-------
Q 000173 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE------------------ENE------- 1723 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e------------------e~E------- 1723 (1935)
.++.+.|+.++...|+..++|++++..+...|+.+.|...|..||+..|.-- ..+
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 3455566666666666666666666666666666666666666654333100 000
Q ss_pred ----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHH
Q 000173 1724 ----KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1798 (1935)
Q Consensus 1724 ----kl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~ 1798 (1935)
-.-.|..+.-..+..| ..-.|.+-|++|++..|.+ ..|+.++++|...+.+++|...|.+++..-|++..++-
T Consensus 213 ~qp~fAiawsnLg~~f~~~G--ei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~g 290 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQG--EIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHG 290 (966)
T ss_pred hCCceeeeehhcchHHhhcc--hHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhcc
Confidence 0134555555555566 3466666666666666664 66666666666666666666666666666666666666
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
+++..|.++ .++-|...|+|||...|.. +.++-++|..+-..|+..+|...|.++|..+|...|..+.++..+...|
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F--~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNF--PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCc--hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 666666666 6666666666666666655 3666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1878 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1878 ~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.++.|..+|+.+++ ..|.-+ ..++....+.+++|+.++|...|..|+.
T Consensus 369 ~~e~A~~ly~~al~--v~p~~a-aa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 369 KIEEATRLYLKALE--VFPEFA-AAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred cchHHHHHHHHHHh--hChhhh-hhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 66666666666666 555555 4566666666666666666666666654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.1e-14 Score=185.80 Aligned_cols=252 Identities=12% Similarity=0.033 Sum_probs=202.3
Q ss_pred CCCcHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1668 APRTPDEFERLVRS---SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1668 ~~~a~~~ferll~~---~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
..++...|++++.. .|+....|..++.++...|++++|+..|++++...|. . ...|+.+..+....| ..+
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~----~~~~~~la~~~~~~g--~~~ 382 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V----TQSYIKRASMNLELG--DPD 382 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c----HHHHHHHHHHHHHCC--CHH
Confidence 33556778888764 4778888888888889999999999999999865442 1 357888888888888 458
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
.|...|++|++..|.. .+|..++.+|...|++++|...|++++...|.+...|+.++..+.+. ++++|...|+++++.
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8999999999888764 88888999999999999999999999998888888999999888888 999999999999988
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-------WSIYLDQEIRLGDVDLIRGLFERAISLSLP 1895 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl-------w~~ya~~e~k~g~~e~ar~lferal~~~~~ 1895 (1935)
+|.. ..+|..+|.++...|++++|...|++++...|..... |.....++...|++++|..+|++++. +.
T Consensus 463 ~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~ 538 (615)
T TIGR00990 463 FPEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--ID 538 (615)
T ss_pred CCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cC
Confidence 8876 4788888999999999999999999999888864332 22222333346889999999999888 56
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1896 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1896 pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
|... ..|..+.......|+.+.|...|++|++...
T Consensus 539 p~~~-~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 PECD-IAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 6665 4677778888888999999999988877654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-13 Score=182.44 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=112.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-
Q 000173 1730 AYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1807 (1935)
Q Consensus 1730 ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~- 1807 (1935)
.+..++...| ..+.|...|++|++..|.. ..|+.++.++...+++++|.+.|++++...|..+.+|+.++.+++..
T Consensus 336 ~lg~~~~~~g--~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 336 LRGTFKCLKG--KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3333444445 3356666666666665553 56666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
++++|...|++++...|.. ...|..+|.++++.|++++|...|++++..+|.+.++|..++.++...|++++|+..|+
T Consensus 414 ~~~~A~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDF--IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred CHHHHHHHHHHHHHcCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6666666666666666554 35566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhcCCCchh------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1888 RAISLSLPPKK------MKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1888 ral~~~~~pk~------~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
+++. +.|.. ...++...+.+....|+++.|..++++|++
T Consensus 492 ~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 492 TAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6665 32221 101222233333334566666666666543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-13 Score=169.43 Aligned_cols=258 Identities=14% Similarity=0.153 Sum_probs=219.5
Q ss_pred HhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCC
Q 000173 1663 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1742 (1935)
Q Consensus 1663 ~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~ 1742 (1935)
...++..+|...|++++..+|++..+|..++.++...+++++|..++++++.. +..........|..++..+...| .
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g--~ 122 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG--L 122 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC--C
Confidence 33456778999999999999999999999999999999999999999999964 32222233467888888888999 4
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHc-CHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQ-QQEGVQAV 1815 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~-----~~vw~~~~~~l~~~-~~e~A~~l 1815 (1935)
.+.|..+|+++++..+.. ..|..++.+|.+.+++++|.+.|+++++..+.. ...|..++..+... ++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 599999999999987664 889999999999999999999999999877644 23566788888888 99999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000173 1816 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1894 (1935)
Q Consensus 1816 l~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~-~dlw~~ya~~e~k~g~~e~ar~lferal~~~~ 1894 (1935)
|+++++..|.. ...+..+|.++.+.|++++|..+|++++...|.. ..+|..++..+...|+.+.|...|++++. .
T Consensus 203 ~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~ 278 (389)
T PRK11788 203 LKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--E 278 (389)
T ss_pred HHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 99999998875 5789999999999999999999999999988876 45788889999999999999999999998 5
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1895 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1895 ~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|... .+..+..+..+.|+.+.|..+++++++.
T Consensus 279 ~p~~~--~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 279 YPGAD--LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred CCCch--HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55543 3467778888899999999999988765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-13 Score=180.76 Aligned_cols=250 Identities=9% Similarity=0.009 Sum_probs=191.5
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+.++|...|++++..+|++..+|..++..+.+.|++++|...+++++...|... ..|...+. ....| ..++|
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-----~a~~~~~~-l~~~g--~~~eA 196 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-----DMIATCLS-FLNKS--RLPED 196 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHH-HHHcC--CHHHH
Confidence 355566666666666666666666666666666666666666666654444221 12322222 34556 34777
Q ss_pred HHHHHHHHhcCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHH----HHHHHHHH
Q 000173 1747 VKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG----VQAVVQRA 1819 (1935)
Q Consensus 1747 ~~vferAl~~~~~--~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~----A~~ll~ra 1819 (1935)
...|+++++..+. ...+..++.++...+++++|...|.+++...|+...+|+.++..+... ++++ |...|+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 7777777776542 244455567788899999999999999999999999999999999998 7775 89999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1820 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
+...|.+ ..+|..+|.++...|++++|...|+++++..|.+..+|..++..+.+.|+++.|...|++++. ..|...
T Consensus 277 l~l~P~~--~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~ 352 (656)
T PRK15174 277 LQFNSDN--VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTS 352 (656)
T ss_pred HhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccch
Confidence 9999876 589999999999999999999999999999999999999999999999999999999999998 666655
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.++..........|+.+.|...|++|++.
T Consensus 353 -~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 -KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444455567789999999999998765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-13 Score=177.28 Aligned_cols=250 Identities=11% Similarity=0.075 Sum_probs=200.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
++..+|...|++++..+|+++..|..++..+.+.|++++|+..|++|+...|.. ..+|..+++++...|+ .+.
T Consensus 90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~-----~~a~~~la~~l~~~g~--~~e 162 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN-----SQIFALHLRTLVLMDK--ELQ 162 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCCC--hHH
Confidence 446677778888888888888888888888888888888888888888654421 3477777888888884 488
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1746 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1746 a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~-~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
|...|++++...|.. ..|..+ ..+.+.|++++|...|.+++..++ .....+..++..+... ++++|...|++++..
T Consensus 163 A~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 163 AISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888888887776654 444443 346777888888888888877764 3333444556667777 899999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADR----GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~----Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~ 1898 (1935)
.|.. ..++..+|.+++..|++++ |...|+++++..|.+..+|..|+.++...|++++|...|++++. +.|..
T Consensus 242 ~p~~--~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~ 317 (656)
T PRK15174 242 GLDG--AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDL 317 (656)
T ss_pred CCCC--HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence 8876 6899999999999999885 89999999999999999999999999999999999999999998 77777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1899 MKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1899 ~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
. ..+..+.......|+.+.|...|+++++
T Consensus 318 ~-~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 318 P-YVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred H-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7 5777788888889999999999998875
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=173.95 Aligned_cols=135 Identities=33% Similarity=0.551 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~-~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
-+|+.|..|..+. ..+.||.+|++|++..+.. ..+|..+|.+|+. .++.+.|+.+||++++.+|.+.++|..|+++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCT--YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3799999999999 9999999999999543333 5899999999999 5678889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1873 EIRLGDVDLIRGLFERAISLSLPPKK-MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1873 e~k~g~~e~ar~lferal~~~~~pk~-~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
+++.++.+.||.+|||++. .++++. ++.+|++|++||.++|+.+.+..+++|+.+++..
T Consensus 80 l~~~~d~~~aR~lfer~i~-~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS-SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC-TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998 577777 8899999999999999999999999999998753
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.3e-16 Score=179.20 Aligned_cols=148 Identities=17% Similarity=0.256 Sum_probs=128.1
Q ss_pred ccCC-CCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000173 1374 EDLS-PNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1935)
Q Consensus 1374 ~~lk-~G~~v~G~V~~v~~~G~fV~l~--~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~ 1450 (1935)
+.+. +|++|.|.|++|.++|+||.|. ++++|+||+++|||.++.++++.+++||.|.|+|+++|+++++|.||+|..
T Consensus 12 ~~~P~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~v 91 (319)
T PTZ00248 12 QKFPEEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKRV 91 (319)
T ss_pred hhCCCCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeeec
Confidence 3566 7999999999999999999996 589999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCCCcEEEeEEEEEee-ceEEEE------EecCceeEEeeccccCcccccCcccccC---CCCEE
Q 000173 1451 DSRTASQSEINNLSNLHVGDIVIGQIKRVES-YGLFIT------IENTNLVGLCHVSELSEDHVDNIETIYR---AGEKV 1520 (1935)
Q Consensus 1451 ~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~-~G~FV~------l~~~~v~Gl~h~sels~~~~~~~~~~~~---~Gd~V 1520 (1935)
..+||... ...++.|+++.|.|+++.+ ||+|++ .-+ .+.++.|.++++...+.+....|. +++.+
T Consensus 92 ~~~pw~~~----~e~~~~g~~v~~~V~~ia~~~g~~~eely~~i~~p-l~~~~gh~y~af~~~v~~~~evl~~l~i~~ev 166 (319)
T PTZ00248 92 SPEDIEAC----EEKFSKSKKVHSIMRHIAQKHGMSVEELYTKIIWP-LYKKYGHALDALKEALTNPDNVFEGLDIPEEV 166 (319)
T ss_pred ccchHHHH----HHhCcCCCEEEEEEEEchhhcCCCHHHHHHHHHHH-HHHhcCCHHHHHHHHhcCchhhhccCCCCHHH
Confidence 99888654 5689999999999999955 999997 334 688999999998887777665666 66655
Q ss_pred EEEEEE
Q 000173 1521 KVKILK 1526 (1935)
Q Consensus 1521 ~~~Il~ 1526 (1935)
+..++.
T Consensus 167 ~~~l~~ 172 (319)
T PTZ00248 167 KESLLQ 172 (319)
T ss_pred HHHHHH
Confidence 544433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=172.80 Aligned_cols=254 Identities=19% Similarity=0.285 Sum_probs=121.3
Q ss_pred ccCCCCcHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCC
Q 000173 1665 EKDAPRTPDEFERLVRS--SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1742 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~--~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~ 1742 (1935)
.++.++|...+.+.+.. .|++...|..++......++++.|+..|++.+..-+.+ ......++.+ ...+++
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~-----~~~~~~l~~l-~~~~~~- 93 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN-----PQDYERLIQL-LQDGDP- 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccc-cccccc-
Confidence 45577888888766654 48999999999999999999999999999999754432 2356667777 567744
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc-CHHHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1819 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~--~~~~~vw~~~~~~l~~~-~~e~A~~ll~ra 1819 (1935)
++|.++++++.+..+....|..++.+|.+.++++++.++++++.... +.++.+|..++.++.+. +.++|...|++|
T Consensus 94 -~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 94 -EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred -cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999877777888899999999999999999999977543 67899999999999999 999999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1820 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
++..|.+ ..++..++.++...|+.++++.+++.+....|.+..+|..|+..+...|+.++|..+|++++. ..|++.
T Consensus 173 l~~~P~~--~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~ 248 (280)
T PF13429_consen 173 LELDPDD--PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDP 248 (280)
T ss_dssp HHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-H
T ss_pred HHcCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cccccc
Confidence 9999987 488999999999999999999999999999999999999999999999999999999999998 777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
.+...|.+.....|..+.|..++.+|++.+.
T Consensus 249 -~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 249 -LWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp -HHHHHHHHHHT--------------------
T ss_pred -ccccccccccccccccccccccccccccccC
Confidence 6888999999999999999999999988764
|
|
| >COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-15 Score=143.86 Aligned_cols=75 Identities=35% Similarity=0.696 Sum_probs=71.6
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.+++|+++.|+|++|++||+||+|++ +-+||+||||+++.+++|+.+.+++||.|+|+|+++| ++++|+||||..
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~-g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~id-e~GKisLSIr~~ 76 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEG-GKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDID-ENGKISLSIRKL 76 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecC-CCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeec-cCCCcceehHHh
Confidence 57899999999999999999999986 7899999999999999999999999999999999999 599999999985
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=182.76 Aligned_cols=248 Identities=13% Similarity=0.092 Sum_probs=199.4
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+.+++...|++++..+|++...|..++..+...+++++|..+++++....+.. ...|..+..+....|+ .+.|
T Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~--~~~A 722 (899)
T TIGR02917 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA-----ALGFELEGDLYLRQKD--YPAA 722 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-----hHHHHHHHHHHHHCCC--HHHH
Confidence 35556666666666667666777777776666777777777766666544321 2456666777777784 4888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1747 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1747 ~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
...|+++++..|....+..++.+|.+.|++++|.+.++++++..|.+..+++.++..+... ++++|...|+++++..|.
T Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 8888888888887788888888888899999999999999988888888999999888888 999999999999988886
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
+ +.++..++.++...|+ ++|..+|++++...|.+..+|..++.++...|++++|..+|++++. ..|... .++..
T Consensus 803 ~--~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~-~~~~~ 876 (899)
T TIGR02917 803 N--AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN--IAPEAA-AIRYH 876 (899)
T ss_pred C--HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCh-HHHHH
Confidence 5 5788888888888888 7799999999999999888999999999999999999999999998 555555 57888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
+.....+.|+.++|+.++++++
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 8888888899999999988876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-12 Score=181.27 Aligned_cols=250 Identities=15% Similarity=0.069 Sum_probs=167.1
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+..++...|++++..+|++...|..++..+...+++++|...|++++...|.. ...|..++.++...| ..+.|
T Consensus 480 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A 552 (899)
T TIGR02917 480 DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN-----LRAILALAGLYLRTG--NEEEA 552 (899)
T ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHcC--CHHHH
Confidence 35566667777777777777777777777777777777777777777554421 246666666666666 34777
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
...|+++++..|.. ..|..++.+|...+++++|.++|+++++.++.+...|..++..+... ++++|...|+++++..|
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 632 (899)
T TIGR02917 553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632 (899)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77777777666553 66666777777777777777777777776666777777777777766 77777777777777666
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1904 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~ 1904 (1935)
.+ +..|..++.++...|++++|..+|++++...|.+...|..++.++...|+.+.|..+|+++.. ..|... ..|.
T Consensus 633 ~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~ 707 (899)
T TIGR02917 633 DS--ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK--QHPKAA-LGFE 707 (899)
T ss_pred CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCh-HHHH
Confidence 54 366667777777777777777777777777777767777777777767777777766666665 333333 3455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1905 KYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1905 ~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.........|+.+.|...|+++++
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555556666666666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.5e-12 Score=180.47 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=141.4
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhH-------HHHHHH--HHHHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-------LNIWVA--YFNLE 1735 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ek-------l~lW~a--yl~le 1735 (1935)
.++..+|...|++++..+|++..+|..++..+.+.+++++|+..|++|++..|......+ ...|.. .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 355788999999999999999999999999999999999999999999986653221111 012222 23344
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR----------- 1803 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~----------- 1803 (1935)
...| ..+.|...|++|++..|.. ..|..++.+|...+++++|.+.|+++++..|.+...|..++.+
T Consensus 362 ~~~g--~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 362 LKAN--NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 5566 4477788888888777654 6677777777777777777777777777777666665544333
Q ss_pred -------------------------------HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1804 -------------------------------LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1851 (1935)
Q Consensus 1804 -------------------------------l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~i 1851 (1935)
+... ++++|.+.|+++++..|.+ +.++..+|.++++.|++++|...
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~--~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS--VWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 2234 6677777777777777765 36667777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHH
Q 000173 1852 FEGILSEYPKRTDLWSI 1868 (1935)
Q Consensus 1852 fe~al~~~Pk~~dlw~~ 1868 (1935)
|++++...|.+.+.+..
T Consensus 518 l~~al~~~P~~~~~~~a 534 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYA 534 (1157)
T ss_pred HHHHHHcCCCCHHHHHH
Confidence 77777666665554433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-12 Score=180.30 Aligned_cols=258 Identities=10% Similarity=0.076 Sum_probs=193.5
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhH--------------------
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-------------------- 1724 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ek-------------------- 1724 (1935)
.++..+|...|++++..+|++...|..++..+...+++++|+..|++|++..|.....-.
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 455788999999999999999999999999999999999999999999976554221000
Q ss_pred -----------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHH
Q 000173 1725 -----------------LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKM 1786 (1935)
Q Consensus 1725 -----------------l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~ 1786 (1935)
...|..........| ..++|.+.|++|++..|.. .+|+.++.+|.+.|++++|...|+++
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g--~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQG--KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 011112223344567 4599999999999999875 88999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHH----------------------------------------HHhCCC
Q 000173 1787 IKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA----------------------------------------LLSLPR 1825 (1935)
Q Consensus 1787 ~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ra----------------------------------------lk~~p~ 1825 (1935)
++..|.++..|+.++.++... +.++|...|+++ +...|.
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~ 601 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP 601 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 998888888888777666555 666665555432 122333
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
+ +.++..+|.++.+.|++++|+..|+++++..|.+.++|..++.++...|+.++|+.+|++++. ..|... ..+..
T Consensus 602 ~--~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~-~~~~~ 676 (1157)
T PRK11447 602 S--TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSL-NTQRR 676 (1157)
T ss_pred C--chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCCh-HHHHH
Confidence 3 356777777888888888888888888888888888888888888888888888888887776 555544 45555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
+.......|+.++|..+|++++..
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhh
Confidence 555556677777777777777654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-12 Score=172.82 Aligned_cols=247 Identities=13% Similarity=0.010 Sum_probs=204.8
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+..++...|.+++...|++. .++.++..+.+.|++++|...|++++...+. . ..|..+..+....| +.+.|
T Consensus 491 ~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~-----~a~~~la~all~~G--d~~eA 561 (987)
T PRK09782 491 LPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-N-----EDLLAAANTAQAAG--NGAAR 561 (987)
T ss_pred CcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-c-----HHHHHHHHHHHHCC--CHHHH
Confidence 34467788999999899753 3555566667899999999999998754332 2 25788888888889 55999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
...|+++++..|.. ..+..++..+.+.|++++|...|++++...|. ...|..++..+.+. ++++|...|++++...|
T Consensus 562 ~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P 640 (987)
T PRK09782 562 DRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP 640 (987)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999988765 55555555666779999999999999999986 99999999999999 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1904 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~ 1904 (1935)
.+ ..++..+|.++...|++++|..+|+++++..|.+.++|..++..+...|+++.|+..|++++. +.|..+ .+-.
T Consensus 641 d~--~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a-~i~~ 715 (987)
T PRK09782 641 NN--SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQA-LITP 715 (987)
T ss_pred CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCc-hhhh
Confidence 88 589999999999999999999999999999999999999999999999999999999999998 777776 4666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1905 KYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1905 ~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.+..++....+++.+..-+.|+..
T Consensus 716 ~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 716 LTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Confidence 666666666666666666666543
|
|
| >COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-12 Score=141.04 Aligned_cols=216 Identities=19% Similarity=0.141 Sum_probs=167.6
Q ss_pred ccCCCEEEEEEEEEEcCcCeEEEEeCCce-EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCC
Q 000173 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHL-YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335 (1935)
Q Consensus 1257 l~~G~iv~g~V~~v~~~~~g~~V~l~~~~-~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~ 1335 (1935)
+.+|++....|.+.+.. |+|++-+.+- .-++|-++.. .....+|++|.+.|+- |.
T Consensus 3 ~~iG~~~~l~V~~~~~~--g~fL~~~~~~~~ilL~k~~~~------------------~~e~evGdev~vFiY~-D~--- 58 (287)
T COG2996 3 IKIGQINSLEVVEFSDF--GYFLDAGEDGTTILLPKSEPE------------------EDELEVGDEVTVFIYV-DS--- 58 (287)
T ss_pred ccccceEEEEEEEeece--eEEEecCCCceEEeccccCCc------------------CCccccCcEEEEEEEE-CC---
Confidence 44999999999999999 9999987643 4455555431 1235699999999886 54
Q ss_pred CceEEEEeecccccCCCCCCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEe-eceEEEEeCCCcEEEEECccCCCc
Q 000173 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLSDG 1414 (1935)
Q Consensus 1336 g~~~i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~-~~G~fV~l~~~v~g~V~~s~lsd~ 1414 (1935)
.+++.++++.+. ..+|+.-.+.|+.+. +-|+||+.|-.-+.+|+++++...
T Consensus 59 -~~rl~aTt~~p~---------------------------~tvg~~g~~~Vv~v~~~lGaFlD~Gl~KDl~vp~~elp~~ 110 (287)
T COG2996 59 -EDRLIATTREPK---------------------------ATVGEYGWLKVVEVNKDLGAFLDWGLPKDLLVPLDELPTL 110 (287)
T ss_pred -CCceeheeecce---------------------------EeecceeEEEEEEEcCCcceEEecCCCcceeeehhhcccc
Confidence 357888876664 568999999999998 789999999999999999998853
Q ss_pred ccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCcee
Q 000173 1415 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494 (1935)
Q Consensus 1415 ~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~ 1494 (1935)
.--. +++|+.+-+. +.+|. .+||..+++.-..-. ........+ -.+|.+.|+|.+....|.||-+++ +.-
T Consensus 111 ~~~w----pq~Gd~l~v~-l~~Dk-k~Ri~g~~a~~~~l~--~l~~~~~~~-l~nq~v~~tVYr~~~~G~fv~~e~-~~~ 180 (287)
T COG2996 111 KSLW----PQKGDKLLVY-LYVDK-KGRIWGTLAIEKILE--NLATPAYNN-LKNQEVDATVYRLLESGTFVITEN-GYL 180 (287)
T ss_pred cccC----CCCCCEEEEE-EEEcc-CCcEEEEecchhHHH--hcCCccchh-hhcCeeeeEEEEEeccceEEEEcC-CeE
Confidence 2112 4699999998 57886 559999887644321 100001111 259999999999999999999975 899
Q ss_pred EEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1495 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1495 Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
|++|.||.... .+.|++++++|+.+. ++++|.||+++.-+
T Consensus 181 GfIh~sEr~~~--------prlG~~l~~rVi~~r-eDg~lnLSl~p~~~ 220 (287)
T COG2996 181 GFIHKSERFAE--------PRLGERLTARVIGVR-EDGKLNLSLRPRAH 220 (287)
T ss_pred EEEcchhhccc--------ccCCceEEEEEEEEc-cCCeeecccccccH
Confidence 99999997644 689999999999998 59999999999644
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=160.14 Aligned_cols=254 Identities=17% Similarity=0.104 Sum_probs=219.7
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc---------------------------
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--------------------------- 1720 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e--------------------------- 1720 (1935)
--+|...|+++-...+|......+.+..|+++.++++|+++|+++-+.-|++-
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44567788885566788887778999999999999999999999988666651
Q ss_pred --hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHH
Q 000173 1721 --ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1797 (1935)
Q Consensus 1721 --e~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw 1797 (1935)
+..+-+-|+++.|++..++ +-++|.+.|+||+|..|.+ =.|.-++.=+.....++.|...|..++...+....+|
T Consensus 415 ~~~~~sPesWca~GNcfSLQk--dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQK--DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhh--HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 1111278999999999998 4599999999999999976 4455555566788899999999999999999999999
Q ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000173 1798 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1876 (1935)
Q Consensus 1798 ~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~ 1876 (1935)
+-++..|+++ +++.|.-.|++|+..+|.+- .+...++.++.+.|+.|+|..+|++|+..+|++..-.+.-+.+++..
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns--vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNS--VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccch--hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 9999999999 99999999999999999983 78888899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1877 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1877 g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
+++++|...||.+-. +.|+.+ ..|........+.|..+.|..-|--|++
T Consensus 571 ~~~~eal~~LEeLk~--~vP~es-~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 571 GRYVEALQELEELKE--LVPQES-SVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred cchHHHHHHHHHHHH--hCcchH-HHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 999999999999887 888888 6777777888889988888777766654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.1e-12 Score=148.59 Aligned_cols=239 Identities=19% Similarity=0.271 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHcC------CH--HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCC-------C-----CHHH
Q 000173 1686 SFVWIKYMAFMLSMA------DV--EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-------P-----PEEA 1745 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~------e~--dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~-------~-----~~e~ 1745 (1935)
..+|.+++.|+..+. .+ .+..-+|++++...++.. .+|..|..+....+. . -.++
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~p-----eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e 311 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHP-----EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDE 311 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHHhhHHHHHhcccccchhhHHH
Confidence 478999999987554 11 233457899998888766 499988877665551 0 1578
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1746 VVKVFQRALQYCDP--KKVHLALLGLYERTEQ---NKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1746 a~~vferAl~~~~~--~~v~~~l~~i~~~~~~---~~~A~el~~~~~k~~~-~~~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
+..+|+|++..... ..+|+++++..+..-+ ++..-+.|+++++++. +..-+|..|..+..+. -+..||.+|.+
T Consensus 312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~k 391 (656)
T KOG1914|consen 312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKK 391 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999977554 3889999988776555 8999999999999884 5566799999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000173 1819 ALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~-~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk 1897 (1935)
|-+.--... .++...|-+|+ -.+|.+-|-.+|+-.|..+++....-+.|+++++..++-..||.+|||++...+++.
T Consensus 392 aR~~~r~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 392 AREDKRTRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HhhccCCcc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 987654443 67777777776 567999999999999999999999999999999999999999999999999668999
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1898 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
+.+.+|.+||+||...||...+..+-.|-....+
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999888777655443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=166.33 Aligned_cols=246 Identities=12% Similarity=0.006 Sum_probs=213.1
Q ss_pred cHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000173 1671 TPDEFERLVRSSPN--SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1748 (1935)
Q Consensus 1671 a~~~ferll~~~P~--s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~ 1748 (1935)
+...+.+++...|. ++..|..++.++.. ++.++|...|.+++...|. . ..++.++......| ..+.|..
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-~-----~~~L~lA~al~~~G--r~eeAi~ 530 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-A-----WQHRAVAYQAYQVE--DYATALA 530 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-h-----HHHHHHHHHHHHCC--CHHHHHH
Confidence 34456667677788 99999999999987 7999999999999987763 1 12333444446788 4599999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1749 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1749 vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
.|++++...+....|+.++.++.+.|++++|...|.++++..|....++..++..+... ++++|...|+++++..|.
T Consensus 531 ~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-- 608 (987)
T PRK09782 531 AWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-- 608 (987)
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--
Confidence 99999888777778899999999999999999999999998888888777777666666 999999999999999994
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
..+|..+|.++.+.|++++|...|++++...|++..+|..++..+...|+.++|+.+|++++. ..|... .+|....
T Consensus 609 -~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~-~a~~nLA 684 (987)
T PRK09782 609 -ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDP-ALIRQLA 684 (987)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999 788888 5777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1908 EYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1908 ~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
......|+.+.|...|++|++.-.
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCC
Confidence 788889999999999999987543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-11 Score=152.62 Aligned_cols=251 Identities=12% Similarity=0.066 Sum_probs=207.1
Q ss_pred cCCCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCC
Q 000173 1666 KDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1741 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s----~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~ 1741 (1935)
++.+++...|++++...+.. ...|..++..+...|++++|+.+|+++++..+. ....|..++.+....|
T Consensus 83 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~la~~~~~~g-- 155 (389)
T PRK11788 83 GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF-----AEGALQQLLEIYQQEK-- 155 (389)
T ss_pred CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc-----hHHHHHHHHHHHHHhc--
Confidence 44667778888887643222 367889999999999999999999999975332 2357888888988999
Q ss_pred CHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHH
Q 000173 1742 PEEAVVKVFQRALQYCDPK------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQA 1814 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~~------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ 1814 (1935)
..+.|.+.|+++++..+.. ..|..++.++.+.+++++|...|+++++..+.....|+.++..+... ++++|.+
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 156 DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4599999999999876542 35678888999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000173 1815 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1894 (1935)
Q Consensus 1815 ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~ 1894 (1935)
+|++++...|... ..++..++..+...|++++|...|+++++..|+. .++..++.++.+.|++++|..+|++++. .
T Consensus 236 ~~~~~~~~~p~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~--~ 311 (389)
T PRK11788 236 ALERVEEQDPEYL-SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLR--R 311 (389)
T ss_pred HHHHHHHHChhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHH--h
Confidence 9999999877542 4678889999999999999999999999999986 4558899999999999999999999998 5
Q ss_pred CchhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Q 000173 1895 PPKKMKFLFKKYLEYEKS---VGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1895 ~pk~~k~l~~~yl~~E~~---~G~~e~a~~v~~rAle~ 1929 (1935)
.|... .|..++..... +|...++..++++.++.
T Consensus 312 ~P~~~--~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 312 HPSLR--GFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred CcCHH--HHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 66654 34455544332 56788888888877753
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-11 Score=143.04 Aligned_cols=254 Identities=17% Similarity=0.150 Sum_probs=208.7
Q ss_pred CcHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHH--H-HH-------HHHH------
Q 000173 1670 RTPDEFERLVRS-SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL--N-IW-------VAYF------ 1732 (1935)
Q Consensus 1670 ~a~~~ferll~~-~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl--~-lW-------~ayl------ 1732 (1935)
++...+++++.. .|++..+=...+.....+.++|+|..+|+..++..|+|-+.-.+ | ++ +.|+
T Consensus 245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~ 324 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN 324 (559)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 456677888865 89999888888888899999999999999999999987322111 1 11 1111
Q ss_pred -------------HHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHH
Q 000173 1733 -------------NLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1798 (1935)
Q Consensus 1733 -------------~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~ 1798 (1935)
|.+...+ .-|.|...|+||++.+|.. .+|.-++.=|....+...|.+.|.+|++..|.....|+
T Consensus 325 idKyR~ETCCiIaNYYSlr~--eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWY 402 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRS--EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWY 402 (559)
T ss_pred hccCCccceeeehhHHHHHH--hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHh
Confidence 1111222 3589999999999999986 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
.+++.|.-. .+.-|.-+|++|++..|.+ ..+|..+|+.|.+.++.++|...|.+++.....+.++...+++++.+.+
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnD--sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPND--SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 999999988 9999999999999999888 4899999999999999999999999999988888899999999999999
Q ss_pred CHHHHHHHHHHHHhcC-----CCchhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1878 DVDLIRGLFERAISLS-----LPPKKMK-FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1878 ~~e~ar~lferal~~~-----~~pk~~k-~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
+.++|-..|++.+... ..++-.+ .+| ...++.+.+++++|.....+++.+
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHhhcchHHHHHHHHHHhcC
Confidence 9999999999988721 2332221 234 567888899998888766666543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=157.03 Aligned_cols=215 Identities=16% Similarity=0.152 Sum_probs=120.5
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
++.+.+...|++++..+|.+...+.+++.+ ...+++++|..+++++.+..+. ...|..++.+....+ ..+.
T Consensus 58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~------~~~l~~~l~~~~~~~--~~~~ 128 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD------PRYLLSALQLYYRLG--DYDE 128 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT---HHH
T ss_pred cccccccccccccccccccccccccccccc-cccccccccccccccccccccc------cchhhHHHHHHHHHh--HHHH
Confidence 457788889999999999999999999998 8999999999999998865431 246888888888899 5599
Q ss_pred HHHHHHHHHhcC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1746 VVKVFQRALQYC--D-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1746 a~~vferAl~~~--~-~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
+..+++++.+.. + +..+|..++.++.+.|+.++|.+.|+++++..|++..++..++.++... +.+++++++.+..+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999988655 2 3489999999999999999999999999999999999999999999988 99999999999988
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..|.+. .+|..+|..++..|++++|..+|++++...|++..++..|++.+...|..++|..++.+++.
T Consensus 209 ~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 209 AAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp H-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HCcCHH--HHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 887764 78999999999999999999999999999999999999999999999999999999999876
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-11 Score=142.48 Aligned_cols=234 Identities=16% Similarity=0.161 Sum_probs=189.1
Q ss_pred hccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCH
Q 000173 1664 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1743 (1935)
Q Consensus 1664 ~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~ 1743 (1935)
+.++.-.|..+|+..+..+|....++|..+..|++..+-++-...|..|.+..|.. ..++.+...+...++ +.
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n-----~dvYyHRgQm~flL~--q~ 410 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN-----PDVYYHRGQMRFLLQ--QY 410 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC-----CchhHhHHHHHHHHH--HH
Confidence 45677888899999999999888889999999999999999999999999654432 347777777777777 44
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
+.|..-|++|+.+.|.+ -.|+.++-...+.++++++...|+.+.++||..+.++..+++.+..+ ++++|.+.|..|+.
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 89999999999999887 67888888888888999999999999999999999999999999999 99999999999999
Q ss_pred hCCCCCh----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 000173 1822 SLPRHKH----IKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1896 (1935)
Q Consensus 1822 ~~p~~~~----~~~~~~~a~le~-~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~p 1896 (1935)
.-|..+. +..+..-|.+.+ -.+++.+|..++++++..+|++...+..+++++.+.|++++|..+||.++. +..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~--lAr 568 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ--LAR 568 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHH
Confidence 8877211 122222232222 238999999999999999999988999999999999999999999999887 543
Q ss_pred hhHHHHHHHHH
Q 000173 1897 KKMKFLFKKYL 1907 (1935)
Q Consensus 1897 k~~k~l~~~yl 1907 (1935)
..+ .+...|-
T Consensus 569 t~~-E~~~a~s 578 (606)
T KOG0547|consen 569 TES-EMVHAYS 578 (606)
T ss_pred hHH-HHHHHHH
Confidence 333 3444444
|
|
| >COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-13 Score=132.86 Aligned_cols=77 Identities=30% Similarity=0.486 Sum_probs=73.3
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
.+++|++++|.|+.|++||+||+|++|=+||+|+|++.+.|+.++.+++++||.|.|+|+++|. ++++.||+|....
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide-~GKisLSIr~~~e 78 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE-NGKISLSIRKLEE 78 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeecc-CCCcceehHHhhh
Confidence 3678999999999999999999999999999999999999999999999999999999999997 9999999997754
|
|
| >cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-12 Score=122.82 Aligned_cols=71 Identities=35% Similarity=0.632 Sum_probs=66.8
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCc---cccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~---~~~f~~G~~V~~kVl~vd~~~~ri~lS 1446 (1935)
+++|++|.|+|++++++|+||+|+++++|+||++++||.++.+| .+.|++||.|+|+|+++|+++++|.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 57999999999999999999999999999999999999997775 589999999999999999999999886
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-11 Score=130.12 Aligned_cols=193 Identities=17% Similarity=0.107 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
..+.+.+.--+.+.| +...|+.-+++||+..|+. ..|..++-+|.+.|..+.|.+.|+++++..|++.++..+|+.|
T Consensus 35 a~arlqLal~YL~~g--d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQG--DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 345555555567788 5699999999999999986 9999999999999999999999999999999999999999999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+..+ ++++|...|++|+..---..+...|.+.+..-++.|+.+.|+.+|+++|..+|++.......++++++.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999 999999999999975322344589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYV 1922 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v 1922 (1935)
|..|++... ... -.+..+|.-| .+++..||...+.+.
T Consensus 193 r~~~~~~~~-~~~-~~A~sL~L~i-riak~~gd~~~a~~Y 229 (250)
T COG3063 193 RLYLERYQQ-RGG-AQAESLLLGI-RIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHh-ccc-ccHHHHHHHH-HHHHHhccHHHHHHH
Confidence 999999887 233 4555677765 689999998776544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-11 Score=156.87 Aligned_cols=240 Identities=10% Similarity=-0.066 Sum_probs=193.3
Q ss_pred CCcHHHHHHHHHcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcC
Q 000173 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSM---------ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1739 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~s~~lW~~y~~~~l~~---------~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g 1739 (1935)
.+|...|++++..+|++...|..++.++... +++++|...+++|++.-|.. ...|..+..+....|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-----~~a~~~lg~~~~~~g 352 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-----PQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcc
Confidence 4678899999999999999998888766532 34899999999999765532 357888888888889
Q ss_pred CCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHH
Q 000173 1740 NPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQ 1817 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ 1817 (1935)
+ .++|...|++|++.+|.. ..|+.++.+|...|++++|...|++++...|.....++.++..++.. ++++|...++
T Consensus 353 ~--~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 E--YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 4 499999999999999986 89999999999999999999999999999998877766666666667 9999999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cc
Q 000173 1818 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL-PP 1896 (1935)
Q Consensus 1818 ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~-~p 1896 (1935)
+++...|... +..+..+|.++...|++++|+..|++++...|.....|...+..+...| ++|+..+++++.... .+
T Consensus 431 ~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDN-PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 9998864332 5788999999999999999999999999999998888888888888887 478888887665111 11
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1897 KKMKFLFKKYLEYEKSVGEEERIEYV 1922 (1935)
Q Consensus 1897 k~~k~l~~~yl~~E~~~G~~e~a~~v 1922 (1935)
.. ..| +..++.-+|+.+.+...
T Consensus 508 ~~--~~~--~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 508 NN--PGL--LPLVLVAHGEAIAEKMW 529 (553)
T ss_pred cC--chH--HHHHHHHHhhhHHHHHH
Confidence 11 122 44556667777766555
|
|
| >cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=122.37 Aligned_cols=71 Identities=21% Similarity=0.445 Sum_probs=66.3
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccC---cccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN---IETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~---~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
+++|++|.|+|+++++||+||.|.+ ++.|++|+++++|.++.+ +.+.|++||.|+++|+++|++++||.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~-~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSS-SIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCC-CCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 5799999999999999999999986 899999999999998766 4589999999999999999999999886
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=130.02 Aligned_cols=90 Identities=39% Similarity=0.549 Sum_probs=74.4
Q ss_pred cCcCcEEEEEEEEEecccEEEEcCCCcEEEEeccccCchhhccc----------ccccccCCCCCcccCCCEEEEEEEEe
Q 000173 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNE----------IEANEDNLLPTIFHVGQLVSCIVLQL 200 (1935)
Q Consensus 131 l~~G~~~lG~V~~i~~~~l~vslp~~l~G~v~~~~is~~~~~~~----------~~~~~~~~l~~~f~~Gq~v~~~V~~~ 200 (1935)
|++||.|+|+|.+|++.++.|+||+++.|+|+++++|+.|.... ..+.+...+.++|++||.|+|+|+++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~ 80 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSL 80 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEc
Confidence 67999999999999999999999999999999999998752110 01122346789999999999999999
Q ss_pred ecCccccceeEEEEeechhhhh
Q 000173 201 DDDKKEIGKRKIWLSLRLSLLY 222 (1935)
Q Consensus 201 ~~~~~~~~~~~i~LS~~p~~vn 222 (1935)
++.++ + +++|.|||+|++||
T Consensus 81 d~~~~-~-~~~i~LSlr~~~vn 100 (100)
T cd05693 81 DKSKS-G-KKRIELSLEPELVN 100 (100)
T ss_pred cCCcC-C-CcEEEEEecHHHCC
Confidence 86532 1 56999999999998
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-10 Score=142.00 Aligned_cols=269 Identities=12% Similarity=0.081 Sum_probs=204.5
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 000173 1656 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1735 (1935)
Q Consensus 1656 ~~~~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le 1735 (1935)
+...-.....++...|.+...+.....|+....++-.+....+.|+++.|...++++.+..|... +.+...+..+.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~----l~~~~~~a~l~ 163 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN----ILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHH
Confidence 34444445566677777788888777787777777777888888888888888888886655322 34566667777
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHh-------------------------
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKK------------------------- 1789 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~------------------------- 1789 (1935)
...+ +.+.|...++++++..|.. .++..++.+|.+.++++.|.+++.+..+.
T Consensus 164 l~~~--~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 164 LAQN--ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 4588888888888887764 67777777777777777666666554432
Q ss_pred -------------cC----CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1790 -------------FK----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1851 (1935)
Q Consensus 1790 -------------~~----~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~i 1851 (1935)
.| +++.+|+.++..+... ++++|.++++++++..|.+.....+......++..++.+.++..
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 22 3678889999988888 99999999999999999875322122222223445889999999
Q ss_pred HHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1852 FEGILSEYPKRT--DLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1852 fe~al~~~Pk~~--dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
++++++..|.+. .+...|+.++++.|++++|+..|+++......|+.. .+..+.....+.|+.+.|.+++++++..
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999 889999999999999999999999533333666655 3558889999999999999999999887
Q ss_pred HHh
Q 000173 1930 VES 1932 (1935)
Q Consensus 1930 v~~ 1932 (1935)
+.+
T Consensus 400 ~~~ 402 (409)
T TIGR00540 400 MLA 402 (409)
T ss_pred Hhc
Confidence 754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=133.78 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
...|..+...+...+ ..+.|.+.|+++++..|.. ..|..++.+|...+++++|.+.|++++...+.....|..++.+
T Consensus 31 ~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQG--DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 467888888888889 4599999999999998774 8899999999999999999999999999999999999999999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+... ++++|.+.|++++...+.......|..+|..++..|++++|...|++++...|.+...|..++.++...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999 999999999999986543344578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
..+|++++. ..|... ..|..........|+.+.++.+.+.+..
T Consensus 189 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQ--TYNQTA-ESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHH--hCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999998 455555 3444667778888999999888777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-12 Score=121.40 Aligned_cols=71 Identities=48% Similarity=0.793 Sum_probs=65.4
Q ss_pred cccCCcEEEEEEEeeecceEEEEecCCcceecccCCCCCCCCCCcCCCCcEEEEEEEEEcCCCcEEEEccCcc
Q 000173 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301 (1935)
Q Consensus 229 ~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~v~~~~~~~~~v~ls~~~~ 301 (1935)
||.+|++++|+|+|||||||+||||+.+++||||+++++... .+++||.+.|.|++++..++.+.||+.+.
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~~--~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~ 71 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNFS--KLKVGQLLLCVVEKVKDDGRVVSLSADPS 71 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCccc--ccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 688999999999999999999999999999999999986443 79999999999999999999999998643
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-10 Score=132.84 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=177.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HH
Q 000173 1684 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KV 1762 (1935)
Q Consensus 1684 ~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v 1762 (1935)
.....|..++..+...+++++|...++++++..|.. ...|..+..++...| +.+.|.+.|+++++..|.. ..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~ 101 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-----YLAYLALALYYQQLG--ELEKAEDSFRRALTLNPNNGDV 101 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHH
Confidence 457889999999999999999999999999765532 357888888888899 4599999999999998764 88
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~--~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
|..++.+|...+++++|.+.|++++... +.....|..++..+... ++++|...|.+++...|.. ...|..+|.++
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~ 179 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--PESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHH
Confidence 9999999999999999999999999753 45678899999999999 9999999999999999876 58899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..|++++|..+|++++...|.+...|...+.++...|+.+.|+.+++.+..
T Consensus 180 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999999998888888899999999999999999888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-10 Score=141.53 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=124.4
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...+...+..+|.++..|..++..|.+.|+++++...+--|-...|. + ..+|..+..+..++|+ .+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d----~e~W~~ladls~~~~~--i~ 224 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-D----YELWKRLADLSEQLGN--IN 224 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-C----hHHHHHHHHHHHhccc--HH
Confidence 466888888999999999999999999999999999999999988888744443 3 2589999999999995 59
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHc-CHHHHHHHHH
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK-----VWLRRVQRLLKQ-QQEGVQAVVQ 1817 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~-----vw~~~~~~l~~~-~~e~A~~ll~ 1817 (1935)
+|+-.|.||++.+|.. ++.+..+.+|.+.|++..|.+.|.+++...|+..- .-..+++++... +-+.|.+.++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999987 89999999999999999999999999988763222 222445555555 4577777777
Q ss_pred HHHHh
Q 000173 1818 RALLS 1822 (1935)
Q Consensus 1818 ralk~ 1822 (1935)
.++..
T Consensus 305 ~~~s~ 309 (895)
T KOG2076|consen 305 GALSK 309 (895)
T ss_pred HHHhh
Confidence 77663
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-10 Score=139.64 Aligned_cols=249 Identities=17% Similarity=0.271 Sum_probs=173.2
Q ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH-cCCCCHHHHHHH
Q 000173 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE-YGNPPEEAVVKV 1749 (1935)
Q Consensus 1671 a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~-~g~~~~e~a~~v 1749 (1935)
.+..|...|...|.+...|.+||.++.+.|..+.+.++|+|++..+|.+ ..+|+.|+++... .+ +.+..+..
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-----vdlW~~Y~~f~~n~~~--d~~~lr~~ 136 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-----VDLWLSYLAFLKNNNG--DPETLRDL 136 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHhccCC--CHHHHHHH
Confidence 4567888999999999999999999999999999999999999999963 4699999999754 45 56889999
Q ss_pred HHHHHhcCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHc------CHHHH------
Q 000173 1750 FQRALQYCDPK----KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV-WLRRVQRLLKQ------QQEGV------ 1812 (1935)
Q Consensus 1750 ferAl~~~~~~----~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~v-w~~~~~~l~~~------~~e~A------ 1812 (1935)
|++|..++... .+|-+|+.+.....+......+|++.+......... +.+|.+++-.+ ..+++
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 99999998753 999999999988999999999999988654322222 12233322221 11111
Q ss_pred ----------------------------------HHHHHHHHH------------------------h-----CCC-CCh
Q 000173 1813 ----------------------------------QAVVQRALL------------------------S-----LPR-HKH 1828 (1935)
Q Consensus 1813 ----------------------------------~~ll~ralk------------------------~-----~p~-~~~ 1828 (1935)
...+.+.+. . .|- ...
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aq 296 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQ 296 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHH
Confidence 111111110 0 000 011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000173 1829 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1908 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~ 1908 (1935)
...|..|+.++...|+.++..-+|++++-.+..-..+|..|+.+....|+.+-|..++.++... ..++.. .+-..|..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~-~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI-HVKKTP-IIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCc-HHHHHHHH
Confidence 4667777777777777777777777777666666667777777777777777777777777661 222222 56666777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 000173 1909 YEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1909 ~E~~~G~~e~a~~v~~rAle 1928 (1935)
|++.+|++..|+.++++..+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHHhhccHHHHHHHHHHHHh
Confidence 77777777777777766543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-10 Score=137.26 Aligned_cols=234 Identities=13% Similarity=0.093 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHH
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHL 1764 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~ 1764 (1935)
.....-.+.|++-.|+.-.|...++.+++..+... ++++.+..++.... +.+..-+.|..|...+|.+ .+|+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-----~lyI~~a~~y~d~~--~~~~~~~~F~~A~~ldp~n~dvYy 398 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-----SLYIKRAAAYADEN--QSEKMWKDFNKAEDLDPENPDVYY 398 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-----hHHHHHHHHHhhhh--ccHHHHHHHHHHHhcCCCCCchhH
Confidence 34455556778889999999999999997655322 34555555555555 3388899999999999987 9999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000173 1765 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1843 (1935)
Q Consensus 1765 ~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g 1843 (1935)
+.++++.-.+++++|..-|++++...|.+.-.++.++-.++++ +++++...|+.+.+.+|.+ ++++..||+.+..++
T Consensus 399 HRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 399 HRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQ 476 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999 9999999999999999999 599999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC------CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000173 1844 VADRGRSMFEGILSEYPK------RTDL--WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1915 (1935)
Q Consensus 1844 ~~e~Ar~ife~al~~~Pk------~~dl--w~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~ 1915 (1935)
+++.|...|..++...|. +... -...+.+-++ +++.+|.+|+++|++ +.|+-- ..+..+..++.+.|+
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e--~Dpkce-~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIE--LDPKCE-QAYETLAQFELQRGK 552 (606)
T ss_pred hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHc--cCchHH-HHHHHHHHHHHHHhh
Confidence 999999999999999998 4332 2223333334 899999999999999 887654 678899999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000173 1916 EERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1916 ~e~a~~v~~rAle~v~~ 1932 (1935)
.++|..+|+++..+..+
T Consensus 553 i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 553 IDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.4e-10 Score=152.77 Aligned_cols=251 Identities=12% Similarity=0.025 Sum_probs=135.2
Q ss_pred CCCcHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1668 APRTPDEFERLVRSSP-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P-~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
...+...|+++..... -+...|..++..+.+.|++++|..+|+++.+. ....+ ...|..++..+.+.| ..+.|
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD---~vTYnsLI~a~~k~G--~~deA 561 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPD---RVVFNALISACGQSG--AVDRA 561 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHCC--CHHHH
Confidence 3344445555544321 24556666666666666666666666655532 11001 235556666656666 34666
Q ss_pred HHHHHHHHh----cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1747 VKVFQRALQ----YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1747 ~~vferAl~----~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~-~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
.++|+++.. ..|....|..++..|.+.|++++|.++|+.|.+.. +.+...|..++..|.+. ++++|.++|.++.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666653 12334556666666666666666666666665543 34555566666666655 6666666666665
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~-Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
+..-.. ....|..+...+.+.|++++|..+|+.+.+.. +-+...|+.++..+.+.|+++.|..+|+.+......|..
T Consensus 642 ~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv- 719 (1060)
T PLN03218 642 KKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV- 719 (1060)
T ss_pred HcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-
Confidence 542111 12455555555556666666666666655442 233445666666666666666666666655543344432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
..|+..+....+.|+.++|..+|+++.
T Consensus 720 -vtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 720 -STMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 245555555555566666555555543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-10 Score=149.76 Aligned_cols=236 Identities=12% Similarity=-0.027 Sum_probs=179.7
Q ss_pred cCCCCHHHHHHHHHHH--HH---cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH---HcCC----CCHHHHHH
Q 000173 1681 SSPNSSFVWIKYMAFM--LS---MADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN---EYGN----PPEEAVVK 1748 (1935)
Q Consensus 1681 ~~P~s~~lW~~y~~~~--l~---~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~---~~g~----~~~e~a~~ 1748 (1935)
..|.+.+.|..|+.-. +. ..++++|+..|++|++..|.. ...|..+..++. ..+. ...++|..
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-----a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~ 325 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-----IAPYCALAECYLSMAQMGIFDKQNAMIKAKE 325 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHcCCcccchHHHHHHH
Confidence 3456666666665543 22 235789999999999766532 234443333322 1111 02588999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1749 VFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1749 vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
.+++|++..|.. ..|..++.++...+++++|...|+++++..|++...|+.++..+... ++++|...|++|+...|.+
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999875 89999999999999999999999999999999999999999999999 9999999999999999987
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1827 KHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1827 ~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~-Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
. ..+..++..++..|++++|...|++++... |.....|..++.++...|+.++|+..|+++.. .+|... ..+..
T Consensus 406 ~--~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~-~~~~~ 480 (553)
T PRK12370 406 A--AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGL-IAVNL 480 (553)
T ss_pred h--hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhH-HHHHH
Confidence 3 445556666778899999999999999875 77888899999999999999999999999876 555433 23333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
........| +.+...+++.++
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHH
Confidence 333444444 355555555444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=147.36 Aligned_cols=140 Identities=24% Similarity=0.293 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERT-EQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~-~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
.+|++||++..+.+ ..+.||.+|++|++.... ..+|.++|.++.+. ++.+.|..+|+++++.|+.+..+|+.|+.|
T Consensus 2 ~v~i~~m~~~~r~~--g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTE--GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 37999999999998 679999999999976654 49999999998885 555559999999999999999999999999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+... +.+.||.+|+|++..+|... .-.+|..|+++|.+.|+.+..+.+++++.+.+|....++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999 99999999999999998876 5689999999999999999999999999999999655544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-12 Score=117.41 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=65.9
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEEC-CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000173 758 HIHPNSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1935)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~-~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~ 834 (1935)
+++.|+.++|+|++|+++|+||+|. +|++||+|++++++. +.|++||.+.|+|+++|++++++.||+++..
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~------~~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~~ 72 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNF------SKLKVGQLLLCVVEKVKDDGRVVSLSADPSK 72 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCcc------cccCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 4788999999999999999999995 699999999999875 6799999999999999999999999998764
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-12 Score=117.94 Aligned_cols=70 Identities=27% Similarity=0.464 Sum_probs=66.5
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccc--ccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~--~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
|++|.|+|+++.++|+||+|.+ +++|+||+++++++. .+++.+.|++||.|+|+|+++|++++||.||+|
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~-~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISP-DVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCC-CcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7899999999999999999987 799999999999874 788999999999999999999999999999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-09 Score=137.03 Aligned_cols=230 Identities=13% Similarity=0.127 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHH
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLA 1765 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~ 1765 (1935)
..++..+....+.|+++.|...+++|.+..|... +...+....+....| +.+.|.+.++++.+..|.. .++..
T Consensus 119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~----~~~~l~~a~l~l~~g--~~~~Al~~l~~~~~~~P~~~~al~l 192 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEARANQHLERAAELADNDQ----LPVEITRVRIQLARN--ENHAARHGVDKLLEVAPRHPEVLRL 192 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3333334444788888888888888886544211 222233356667777 4488888888888888765 77777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH------------------------------------------hcCCCHHHHHHHHHH
Q 000173 1766 LLGLYERTEQNKLADELLYKMIK------------------------------------------KFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1766 l~~i~~~~~~~~~A~el~~~~~k------------------------------------------~~~~~~~vw~~~~~~ 1803 (1935)
++.+|.+.+++++|.+++.++.+ ..++++.++..|+..
T Consensus 193 l~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 193 AEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 77888888888877766655542 334577788899999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+... +.++|..+++++++.. .+ ..+...|+++ ..++++++.+.+++.++.+|++.+++..++.++.+.+++++|
T Consensus 273 l~~~g~~~~A~~~L~~~l~~~-~~--~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKRQ-YD--ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CC--HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999 9999999999999953 33 3677777765 348999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
+..|++++. ..|... .+..+...+.+.|+.+.+.++|++++..+.
T Consensus 348 ~~~le~al~--~~P~~~--~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 348 SLAFRAALK--QRPDAY--DYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHHHHHh--cCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 999999999 666654 466788888999999999999999998764
|
|
| >PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-12 Score=152.17 Aligned_cols=146 Identities=18% Similarity=0.260 Sum_probs=119.9
Q ss_pred cccCC-CCCEEEEEEEEEecCceEEEeC--CCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEec
Q 000173 493 HSDVK-PGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567 (1935)
Q Consensus 493 ~~~l~-~G~~v~g~V~~v~~~G~~V~l~--~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~~i~ltlK~ 567 (1935)
.+.++ +|++|.|+|++|.++|+||+|. ++++||||.+++||.+..+|.+.+++|++|.|+||.+ ++++|.||+|+
T Consensus 11 ~~~~P~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~ 90 (319)
T PTZ00248 11 EQKFPEEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKR 90 (319)
T ss_pred hhhCCCCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeee
Confidence 34566 7999999999999999999996 6899999999999999999999999999999999999 57899999998
Q ss_pred ccccchhhHHhhhhhcCCCcEEEEEEEEEe-cceEEEE------EcCCeEEEecCcccCCCCCCCCCCCCC---CCCEEE
Q 000173 568 TLVKSKLAILSSYAEATDRLITHGWITKIE-KHGCFVR------FYNGVQGFAPRSELGLDPGCEPSSMYH---VGQVVK 637 (1935)
Q Consensus 568 ~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~-~~G~~V~------~~~~v~g~vp~se~~~~~~~~~~~~~~---vGq~v~ 637 (1935)
...++|......| +.|++++|+|..+. .+|++++ .....++|.|..+++...+.++.+.|. +|+.++
T Consensus 91 v~~~pw~~~~e~~---~~g~~v~~~V~~ia~~~g~~~eely~~i~~pl~~~~gh~y~af~~~v~~~~evl~~l~i~~ev~ 167 (319)
T PTZ00248 91 VSPEDIEACEEKF---SKSKKVHSIMRHIAQKHGMSVEELYTKIIWPLYKKYGHALDALKEALTNPDNVFEGLDIPEEVK 167 (319)
T ss_pred cccchHHHHHHhC---cCCCEEEEEEEEchhhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhccCCCCHHHH
Confidence 8877554444444 78999999999995 5999998 457788999999886544445555554 666555
Q ss_pred EEEE
Q 000173 638 CRIM 641 (1935)
Q Consensus 638 ~rVl 641 (1935)
..++
T Consensus 168 ~~l~ 171 (319)
T PTZ00248 168 ESLL 171 (319)
T ss_pred HHHH
Confidence 5444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-09 Score=149.74 Aligned_cols=260 Identities=10% Similarity=0.020 Sum_probs=200.4
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ------------------------------ 1714 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~------------------------------ 1714 (1935)
.++..+|...|++++..+|++..+|..|+..+...+..++|...+++++.
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence 34577888899999999999999999998888777777766655553332
Q ss_pred ----------------hccccchh--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcC
Q 000173 1715 ----------------TINIREEN--EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD--PKKVHLALLGLYERTE 1774 (1935)
Q Consensus 1715 ----------------~i~~~ee~--Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~--~~~v~~~l~~i~~~~~ 1774 (1935)
..+...+. .....++..+......+ ..+.|...|+++++..+ +......++.+|...+
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g--~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD--RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 11100000 00011222122224556 44889999999998863 2333333588999999
Q ss_pred ChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC-------------ChHHHHHHHH
Q 000173 1775 QNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-------------KHIKFISQTA 1836 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~~~~~----~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~-------------~~~~~~~~~a 1836 (1935)
++++|...|++++...+.. ...+..++..++++ ++++|..+|++++...|.. ....++...|
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 9999999999998766544 45667777777788 9999999999999987631 2246788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1916 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~ 1916 (1935)
+++...|++++|..+|++++...|.+..+|..++.++...|++++|..+|++++. +.|... .++..........|+.
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~-~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNI-NLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCh-HHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999999999999999999 778887 4666666677889999
Q ss_pred HHHHHHHHHHHHH
Q 000173 1917 ERIEYVKQKAMEY 1929 (1935)
Q Consensus 1917 e~a~~v~~rAle~ 1929 (1935)
+.|+.+++++++.
T Consensus 444 ~~A~~~~~~ll~~ 456 (765)
T PRK10049 444 RQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.2e-10 Score=121.72 Aligned_cols=196 Identities=15% Similarity=0.101 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHH
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHL 1764 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~ 1764 (1935)
....+.++.-|++.|++..|+..+++||+.-|.. ...|..++-++...|. .+.|.+.|++|++..|.+ ++..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~-----~~a~~~~A~~Yq~~Ge--~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY-----YLAHLVRAHYYQKLGE--NDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcCC--hhhHHHHHHHHHhcCCCccchhh
Confidence 4567788888999999999999999999876643 3689999999999994 599999999999999987 9999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1765 ALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1765 ~l~~i~~~~~~~~~A~el~~~~~k~--~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
.|+-+++..|++++|...|++++.. |+...+.|.+.+-+.++. +++.|+.+|+|+|..+|... ......++.+++
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--~~~l~~a~~~~~ 185 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--PALLELARLHYK 185 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--hHHHHHHHHHHh
Confidence 9999999999999999999999975 478899999999999999 99999999999999999985 889999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~d-lw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.|++-.||..|++.....+-..+ ||.. +.++...||.+.+-.+=.+.-.
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~~~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 186 AGDYAPARLYLERYQQRGGAQAESLLLG-IRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cccchHHHHHHHHHHhcccccHHHHHHH-HHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999988776554 6665 7889999999888775555444
|
|
| >cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=115.91 Aligned_cols=70 Identities=30% Similarity=0.565 Sum_probs=67.2
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc--cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1379 G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~--~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
|++|.|+|+++.++|+||.|+++++|++|+++++|.. .++|.+.|++||.|+|+|+++|+++++|.||++
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7899999999999999999999999999999999874 889999999999999999999999999999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-09 Score=131.54 Aligned_cols=265 Identities=18% Similarity=0.263 Sum_probs=200.1
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 000173 1656 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1735 (1935)
Q Consensus 1656 ~~~~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le 1735 (1935)
|.....+.-.....+.+..||+++...|.++.+|..|+..++...+++....+|.|||..+- .+++|..|+..-
T Consensus 23 w~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL------nlDLW~lYl~YV 96 (656)
T KOG1914|consen 23 WSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL------NLDLWKLYLSYV 96 (656)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh------hHhHHHHHHHHH
Confidence 44444444334588899999999999999999999999999999999999999999997543 268999999885
Q ss_pred HHcCCC---CHHHHHHHHHHHHhcCC----CHHHHHHHHHHH---------HHcCChHHHHHHHHHHHHhc-CCCHHHHH
Q 000173 1736 NEYGNP---PEEAVVKVFQRALQYCD----PKKVHLALLGLY---------ERTEQNKLADELLYKMIKKF-KHSCKVWL 1798 (1935)
Q Consensus 1736 ~~~g~~---~~e~a~~vferAl~~~~----~~~v~~~l~~i~---------~~~~~~~~A~el~~~~~k~~-~~~~~vw~ 1798 (1935)
.+.... -.+...+.|+-|++.+- +..+|..|++++ +.+.+.+..++.|++|+-.. .+-.++|.
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 543320 12455667777777664 248899998864 45568899999999999654 45688999
Q ss_pred HHHHHHHHc--------------CHHHHHHHHHHHHHh----------CCC------CChHHHHHHHHHHHHHcCC----
Q 000173 1799 RRVQRLLKQ--------------QQEGVQAVVQRALLS----------LPR------HKHIKFISQTAILEFKNGV---- 1844 (1935)
Q Consensus 1799 ~~~~~l~~~--------------~~e~A~~ll~ralk~----------~p~------~~~~~~~~~~a~le~~~g~---- 1844 (1935)
.|..|.... .+..||++++..... .|. ...+++|.+|..+|..++-
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~ 256 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLD 256 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccc
Confidence 999887642 577788777765432 111 1225789999999986652
Q ss_pred ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000173 1845 ----ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD--------------VDLIRGLFERAISLSLPPKKMKFLFKKY 1906 (1935)
Q Consensus 1845 ----~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~--------------~e~ar~lferal~~~~~pk~~k~l~~~y 1906 (1935)
-.|..-.|+++|...+-..++|+.|.++....++ .++++++|||+++ .+. +..+.++..|
T Consensus 257 ~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~-~l~-~~~~~Ly~~~ 334 (656)
T KOG1914|consen 257 GTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE-GLL-KENKLLYFAL 334 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH-HHH-HHHHHHHHHH
Confidence 2455567899999999999999999999988777 7889999999998 233 3344788999
Q ss_pred HHHHHHcCC---HHHHHHHHHHHHH
Q 000173 1907 LEYEKSVGE---EERIEYVKQKAME 1928 (1935)
Q Consensus 1907 l~~E~~~G~---~e~a~~v~~rAle 1928 (1935)
.++|+..-+ .+.+...+++++.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~ 359 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLK 359 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHh
Confidence 999877655 6666677766653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8e-10 Score=150.85 Aligned_cols=253 Identities=10% Similarity=0.002 Sum_probs=175.5
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCC---
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP--- 1742 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~--- 1742 (1935)
++.++|...+++++..+|++.. |..++..+...++.++|...++++++..|... .+|..|+.+....+...
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~-----~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ-----QYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHHHH
Confidence 4477777778888777888877 88888777888888888888888886655322 35555555544333210
Q ss_pred -----------------------------------------HHHHHHHHHHHHhcC---CCH-----HHHHHHHHHHHHc
Q 000173 1743 -----------------------------------------EEAVVKVFQRALQYC---DPK-----KVHLALLGLYERT 1773 (1935)
Q Consensus 1743 -----------------------------------------~e~a~~vferAl~~~---~~~-----~v~~~l~~i~~~~ 1773 (1935)
.+.|.+.|+++++.. |.. ..++..+..+...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 022344444444331 111 1222212233456
Q ss_pred CChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHH
Q 000173 1774 EQNKLADELLYKMIKKF---KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADR 1847 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~---~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~--~~~~~~~~a~le~~~g~~e~ 1847 (1935)
+++++|...|+++++.. |.....| ++..++.. ++++|...|+++++..|... ....+..++..+.+.|++++
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 78888888888888764 3334455 46777777 88888888888887766541 23566777777788889999
Q ss_pred HHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1848 GRSMFEGILSEYPK---------------RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1848 Ar~ife~al~~~Pk---------------~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
|..+|++++...|. ...++..++.++...|+.++|+.+|++++. ..|.+. .+|.........
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~-~l~~~lA~l~~~ 405 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQ-GLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHh
Confidence 99999988888763 134667788888889999999999999988 677776 688888888888
Q ss_pred cCCHHHHHHHHHHHHHH
Q 000173 1913 VGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1913 ~G~~e~a~~v~~rAle~ 1929 (1935)
.|+.+.|..++++|++.
T Consensus 406 ~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 406 RGWPRAAENELKKAEVL 422 (765)
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 99999999999998874
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-09 Score=129.26 Aligned_cols=215 Identities=15% Similarity=0.116 Sum_probs=179.6
Q ss_pred CCCcHHHHHHHHHcCCC---CHHHHHH-------------------------------HHHHHHHcCCHHHHHHHHHHHH
Q 000173 1668 APRTPDEFERLVRSSPN---SSFVWIK-------------------------------YMAFMLSMADVEKARSIAERAL 1713 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~---s~~lW~~-------------------------------y~~~~l~~~e~dkAr~v~erAl 1713 (1935)
..++...||..+..+|. +-+++.+ .+.+|.-.++-++|...|+|||
T Consensus 278 fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL 357 (559)
T KOG1155|consen 278 FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL 357 (559)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH
Confidence 77888899999988884 2222222 1222334567899999999999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 000173 1714 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKH 1792 (1935)
Q Consensus 1714 ~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~ 1792 (1935)
+..| +- +++|.-+.--+..+.+. ..|.+.|+||+..+|.. +.|+.+++.|...+-+.-|.=.|++++..-|+
T Consensus 358 kLNp-~~----~~aWTLmGHEyvEmKNt--~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn 430 (559)
T KOG1155|consen 358 KLNP-KY----LSAWTLMGHEYVEMKNT--HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN 430 (559)
T ss_pred hcCc-ch----hHHHHHhhHHHHHhccc--HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 7544 33 68999888877888854 89999999999999986 99999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-------PKRTD 1864 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~-------Pk~~d 1864 (1935)
...+|..++++|.+. +.++|.+.|.||+...... -.++..+|+++.+.++.++|...|++.+... |.-..
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte--~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE--GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc--hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 999999999999999 9999999999999886554 3799999999999999999999999999843 33233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1865 LWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1865 lw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..-++..+++.+++++|..+..+++.
T Consensus 509 a~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 333378999999999999998888877
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-09 Score=147.58 Aligned_cols=251 Identities=9% Similarity=0.016 Sum_probs=170.0
Q ss_pred CCCcHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1668 APRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~-P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
...+...|+++.... +.+...|..++..+.+.|+++.|+.+|+++.+.-...+ ...|..++..+.+.| ..+.|
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd----vvTynaLI~gy~k~G--~~eeA 526 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN----VHTFGALIDGCARAG--QVAKA 526 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCc--CHHHH
Confidence 445556666665433 23566777777777777777777777777765311111 356777777777777 44777
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1747 VKVFQRALQY--CDPKKVHLALLGLYERTEQNKLADELLYKMIKK---FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1747 ~~vferAl~~--~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~---~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
.++|+++.+. .|....|..++..|.+.+++++|.++|++|... ...+...|..++..|.+. ++++|.++|+++.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777654 345577777777777777777777777777653 234556677777777777 7777777777777
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~--~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~ 1898 (1935)
+..... ....|..+...+.+.|++++|..+|+.+.+. .|+ ...|..+++.+.+.|++++|..+|+.+......|..
T Consensus 607 e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 607 EYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 654222 2467777777777777777777777777665 333 456777777777777777777777777775555543
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1899 MKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1899 ~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
..|...+....+.|+.+.|..+|+++.+
T Consensus 685 --~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 685 --VSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3677777777777888888777776643
|
|
| >cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-11 Score=119.31 Aligned_cols=79 Identities=47% Similarity=0.685 Sum_probs=75.6
Q ss_pred CCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 752 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 752 ~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
++..++++++|+.+.|.|++++++|+||++.+++.||+|.+++++.+..++.+.|++||+|+|+|+++|.+++++.|||
T Consensus 5 l~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 5 LPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred chhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 5667888999999999999999999999999999999999999999999999999999999999999999999999986
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=143.08 Aligned_cols=210 Identities=20% Similarity=0.190 Sum_probs=184.9
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH--H-HHcCCCCHHHHHHHHHH
Q 000173 1676 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL--E-NEYGNPPEEAVVKVFQR 1752 (1935)
Q Consensus 1676 erll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~l--e-~~~g~~~~e~a~~vfer 1752 (1935)
+.++..+|+++..|...+.++--+++.+.|.+.|+||++.-| +. =.+|--+ | .... ..|.|...|+.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~f-------aYayTLlGhE~~~~e--e~d~a~~~fr~ 480 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RF-------AYAYTLLGHESIATE--EFDKAMKSFRK 480 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-cc-------chhhhhcCChhhhhH--HHHhHHHHHHh
Confidence 356677899999999999999999999999999999996544 22 1122211 2 2223 34889999999
Q ss_pred HHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1753 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1753 Al~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
|+...+.. +.|+-++-+|.+.++++.|+-.|++|+.+.|.+..+-..++.++.+. +.++|..+|++|+...|++. -
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~--l 558 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP--L 558 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc--h
Confidence 99999875 99999999999999999999999999999999999999999999999 99999999999999999884 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
..+..|.+++..+++++|...||.+-+..|+...+....+..+.+.|..+.|..-|--|.. +.|+..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg~ 625 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKGA 625 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCccc
Confidence 7788899999999999999999999999999999999999999999999999999999988 777655
|
|
| >cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-11 Score=113.17 Aligned_cols=71 Identities=23% Similarity=0.399 Sum_probs=66.2
Q ss_pred CCCCcEEEeEEEEEee-ceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1466 LHVGDIVIGQIKRVES-YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~-~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
+++|++|.|+|+++.+ ||+||+|.+ +.+|++|+|+++++++.++.+.|++||.|+|+|+++|. +||.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~-~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPF-GKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCC-CCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4789999999999986 899999976 89999999999999999999999999999999999984 99999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-11 Score=112.36 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=65.3
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
..|+++.|+|+++.+||+||+|.+...+||||+|++++.++.++.+.|++||.|+++|+++|.++ ||+||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 58999999999999999999995434799999999999999999999999999999999999876 999986
|
pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis. |
| >cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-11 Score=112.32 Aligned_cols=70 Identities=30% Similarity=0.558 Sum_probs=67.3
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
|+.+.|+|.+++++|+||+|++++.||+|.+++++++..++.+.|++||.++|+|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECCCCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7889999999999999999999999999999999888889999999999999999999999999999985
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-09 Score=128.19 Aligned_cols=253 Identities=19% Similarity=0.302 Sum_probs=181.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCC---------
Q 000173 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMAD-VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP--------- 1741 (1935)
Q Consensus 1672 ~~~ferll~~~P~s~~lW~~y~~~~l~~~e-~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~--------- 1741 (1935)
...|..+|..+|+++++|+.-|.++..-+. ++.||.++.|+|+..|-.+ .+|..|..+|..+-+-
T Consensus 125 ~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp-----~Lw~eyfrmEL~~~~Kl~~rr~~~g 199 (568)
T KOG2396|consen 125 KKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSP-----KLWKEYFRMELMYAEKLRNRREELG 199 (568)
T ss_pred HHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 458899999999999999999999987764 9999999999998666333 4898888887754210
Q ss_pred -C------------------------------------------------------------------------------
Q 000173 1742 -P------------------------------------------------------------------------------ 1742 (1935)
Q Consensus 1742 -~------------------------------------------------------------------------------ 1742 (1935)
+
T Consensus 200 ~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~ 279 (568)
T KOG2396|consen 200 LDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQ 279 (568)
T ss_pred cccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHH
Confidence 0
Q ss_pred ------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHH----------------------------------
Q 000173 1743 ------------------EEAVVKVFQRALQYCDPKKVHLALLGLY---------------------------------- 1770 (1935)
Q Consensus 1743 ------------------~e~a~~vferAl~~~~~~~v~~~l~~i~---------------------------------- 1770 (1935)
.+...++|+.|+++-++..+|..|+.+.
T Consensus 280 tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~ 359 (568)
T KOG2396|consen 280 TDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYK 359 (568)
T ss_pred hhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHH
Confidence 3445566666666666666776665522
Q ss_pred ------HHcCChHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHc--CHHHHHHH--------------------------
Q 000173 1771 ------ERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ--QQEGVQAV-------------------------- 1815 (1935)
Q Consensus 1771 ------~~~~~~~~A~el~~~~~-k~~~~~~~vw~~~~~~l~~~--~~e~A~~l-------------------------- 1815 (1935)
.......+|++.-.+++ ..|.++.++|..+.+.+.+. +++--...
T Consensus 360 ~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl 439 (568)
T KOG2396|consen 360 QYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSL 439 (568)
T ss_pred HHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccch
Confidence 11122334444444444 45668889999888777633 22222111
Q ss_pred -------HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 000173 1816 -------VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRGLF 1886 (1935)
Q Consensus 1816 -------l~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~--g~~e~ar~lf 1886 (1935)
+-.|+++....+...+-..|-.++++.|-+..||..|.++...-|-..+++...+++|..+ -+...+|.+|
T Consensus 440 ~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~y 519 (568)
T KOG2396|consen 440 QEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYY 519 (568)
T ss_pred hHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHH
Confidence 1222222222222345556666777788899999999999999999999999999999754 3478899999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1887 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1887 eral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
++|+. ..-.+. .+|..|+.+|..+|..+.+-.+|.||+.-++-
T Consensus 520 d~a~~--~fg~d~-~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~ 562 (568)
T KOG2396|consen 520 DRALR--EFGADS-DLWMDYMKEELPLGRPENCGQIYWRAMKTLQG 562 (568)
T ss_pred HHHHH--HhCCCh-HHHHHHHHhhccCCCcccccHHHHHHHHhhCh
Confidence 99998 333555 79999999999999999999999999988764
|
|
| >PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-11 Score=111.14 Aligned_cols=73 Identities=37% Similarity=0.625 Sum_probs=70.6
Q ss_pred cCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
++.|+.+.|+|.++.++|+||++.+++.||+|.+++++.+..++...|++||+|+|+|+++|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999986
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A .... |
| >cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.9e-11 Score=112.60 Aligned_cols=77 Identities=52% Similarity=0.993 Sum_probs=71.9
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
++|+++.|+|+++.++|+||+|.+.++.|++|++++++++..++.+.|++||.|+|+|+++|++++++.||+|+++|
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~~~ 77 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKASYF 77 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEeecC
Confidence 46999999999999999999997557999999999999988888899999999999999999999999999999864
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=127.24 Aligned_cols=233 Identities=18% Similarity=0.298 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 000173 1686 SFVWIKYMAFMLSMA-----D--VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1758 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~-----e--~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~ 1758 (1935)
-.-|++++.|+.+.+ + ..+---++++++...++.+ .+|..|.......+ +.+.|..+.+|+..++|
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~-----evw~dys~Y~~~is--d~q~al~tv~rg~~~sp 333 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAE-----EVWFDYSEYLIGIS--DKQKALKTVERGIEMSP 333 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHhhcc--HHHHHHHHHHhcccCCC
Confidence 345999999987654 1 2334457899999888866 49999999988888 67999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHH----hcC--------------------------CCHHHHHHHHHHHHHc-
Q 000173 1759 PKKVHLALLGLYERTEQNKLADELLYKMIK----KFK--------------------------HSCKVWLRRVQRLLKQ- 1807 (1935)
Q Consensus 1759 ~~~v~~~l~~i~~~~~~~~~A~el~~~~~k----~~~--------------------------~~~~vw~~~~~~l~~~- 1807 (1935)
+ +++.|+..|+..++-+....+|+++.. +++ .-.-+|.-+..+..+.
T Consensus 334 s--L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 334 S--LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKR 411 (660)
T ss_pred c--hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 8 667777788877777777777776542 111 1133677788888888
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1886 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~-~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lf 1886 (1935)
-.+.||.+|-++-+.--..+ .+|...|-+++ ..|++.-|-.+|+-.+..+|+..-....|..+++..++-+.||++|
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h--~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGH--HVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred hHHHHHHHHHHHhccCCCCc--ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 99999999999977542222 56777777766 5689999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1887 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1887 eral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
|.++. .+...+++.+|.+||++|...|+...|..+-+|..+.+
T Consensus 490 etsv~-r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 490 ETSVE-RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHhHH-HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 98887 44445778899999999999999988887777776654
|
|
| >cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.2e-11 Score=110.73 Aligned_cols=73 Identities=22% Similarity=0.504 Sum_probs=68.7
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
+++|+++.|+|+++.++|+||+|++ +++|++|++++++++..++.+.|++||.|+++|+++|+++++|.||++
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~-~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGN-KVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCC-CcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4789999999999999999999986 799999999999998888889999999999999999999999999975
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.4e-11 Score=110.34 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=65.4
Q ss_pred CcEEE-eEEEEE-eeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1469 GDIVI-GQIKRV-ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1469 G~~v~-G~V~~v-~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
|++|. |+|+++ .+||+||+|.+ +++||+|+|++++++++++.+.|++||.++++|+++|+++++|.||+
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~-gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKD-GLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCC-CCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 78899 999999 69999999987 79999999999999999899999999999999999999999999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-09 Score=126.65 Aligned_cols=203 Identities=14% Similarity=0.097 Sum_probs=159.3
Q ss_pred HHHHHHHHcC---C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000173 1673 DEFERLVRSS---P-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1748 (1935)
Q Consensus 1673 ~~ferll~~~---P-~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~ 1748 (1935)
..|.++|... | +.+..|...+..+...|+.+.|+..|++|++..|.. ...|..+.......| +.+.|..
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~~~~~g--~~~~A~~ 119 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-----ADAYNYLGIYLTQAG--NFDAAYE 119 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCC--CHHHHHH
Confidence 3445555432 2 457889999999999999999999999999765532 468999999999999 5599999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1749 VFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK--VWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1749 vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~--vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
.|++|++..|.. ..|..++.+|...|++++|.+.|+++++..|.++. +|. .+.... ++++|...|.+++...+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~---~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL---YLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHccCCHHHHHHHHHHHHhhCC
Confidence 999999999875 89999999999999999999999999999988763 332 222334 89999999988776553
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGIL-------SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al-------~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.. .|. ++...+..|+...+ ..|+.+. +..|...+.|+.++..+.+.|++++|+..|++|+.
T Consensus 197 ~~----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 197 KE----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred cc----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 343 45555566765444 3444444 44556667899999999999999999999999999
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.1e-09 Score=129.00 Aligned_cols=86 Identities=28% Similarity=0.478 Sum_probs=71.1
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS-MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~-~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
....+.+.|||.+..-|.|..+|+.|.+|+.. .++.+.-|..|+||+..+.. ++-.-.+|-.|+.+++...++ ..
T Consensus 94 ~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~--dF~S~~lWdkyie~en~qks~--k~ 169 (577)
T KOG1258|consen 94 NAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL--DFLSDPLWDKYIEFENGQKSW--KR 169 (577)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc--chhccHHHHHHHHHHhccccH--HH
Confidence 35667889999999999999999999999964 45778899999999987765 444457999999999888844 77
Q ss_pred HHHHHHHHHhc
Q 000173 1746 VVKVFQRALQY 1756 (1935)
Q Consensus 1746 a~~vferAl~~ 1756 (1935)
.-.+|+|.+++
T Consensus 170 v~~iyeRilei 180 (577)
T KOG1258|consen 170 VANIYERILEI 180 (577)
T ss_pred HHHHHHHHHhh
Confidence 77888887764
|
|
| >cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=109.23 Aligned_cols=73 Identities=25% Similarity=0.406 Sum_probs=69.9
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
+++|+++.|+|+++.++|+||+|+.+++|++|+++++|+|..++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4789999999999999999999999999999999999999888999999999999999999999999999985
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.9e-11 Score=110.06 Aligned_cols=71 Identities=28% Similarity=0.409 Sum_probs=67.1
Q ss_pred CCCCCEEEEEEEEEee-ceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1376 LSPNMIVQGYVKNVTS-KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~-~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
+++|+++.|+|+++.+ +|+||+|+++.+|++|+++++|.|+.+|.+.|++||.|+|+|++++. +++.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPFGKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCCCCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4789999999999986 89999999999999999999999999999999999999999999984 99999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.5e-11 Score=110.02 Aligned_cols=70 Identities=37% Similarity=0.543 Sum_probs=66.8
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
|+++.|+|+++.++|+||+|.+ ++.||+|+|+++++++.++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~-~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYN-NVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECC-CCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7899999999999999999976 699999999999998889999999999999999999999999999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=109.33 Aligned_cols=73 Identities=30% Similarity=0.517 Sum_probs=71.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
+++|+++.|+|.++.++|+||+++.+++|+||++++++.+..++...|++||.++++|+++|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999986
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A .... |
| >cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=112.70 Aligned_cols=78 Identities=33% Similarity=0.535 Sum_probs=74.0
Q ss_pred hhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000173 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447 (1935)
Q Consensus 1370 ~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSl 1447 (1935)
+..+.++++|+++.|+|+++.++|+||+++++++|++|++++++++..++.+.|++||.|+++|+++|.+++++.||+
T Consensus 6 ~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 6 PTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred hhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 455678999999999999999999999999999999999999999999999999999999999999999999999986
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=108.49 Aligned_cols=69 Identities=28% Similarity=0.622 Sum_probs=65.8
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
|+++.|+|+++.++|+||+|.+ ++.|++|++++++.+..++.+.|++||.++++|+++|+++++|.|||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSD-HIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecC-CcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 7899999999999999999986 79999999999999888888999999999999999999999999985
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-08 Score=113.60 Aligned_cols=227 Identities=14% Similarity=0.187 Sum_probs=191.5
Q ss_pred HHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcC
Q 000173 1660 EERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1739 (1935)
Q Consensus 1660 e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g 1739 (1935)
-..++++....|++.|-.++..+|...++.+.+...+-+-|+.|+|..+-+..+.+.+... .+|+..-.++..-+..-|
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~-~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTF-EQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHHHHHHhh
Confidence 3346677799999999999999999999999999999999999999999988887655533 345566667777778888
Q ss_pred CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHc-CHHHH
Q 000173 1740 NPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQ-QQEGV 1812 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~-----~~vw~~~~~~l~~~-~~e~A 1812 (1935)
-.+.|+++|......... ......++.||....+.++|.+.-++..+.-++. ...+..++.-++.. +.++|
T Consensus 122 --l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 --LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred --hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 459999999988764433 4889999999999999999999999999877543 34455666666666 99999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1813 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1813 ~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d-lw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+.++++|++.+|++ +.+-+..|.++...|+++.|...++++++.+|.-.. +...+...|...|+.+..++.+.+++.
T Consensus 200 ~~~l~kAlqa~~~c--vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQADKKC--VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhhCccc--eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999998 488899999999999999999999999999998654 566777777888999999999999987
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.7e-09 Score=131.91 Aligned_cols=226 Identities=12% Similarity=0.102 Sum_probs=177.8
Q ss_pred HHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chhh--HHHHHHHHHHHH
Q 000173 1659 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENE--KLNIWVAYFNLE 1735 (1935)
Q Consensus 1659 ~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~-ee~E--kl~lW~ayl~le 1735 (1935)
.+.....++..++...+++++..+|++..++..++..+++.++++.|.+.+++.++.-... .+.. ....|..++.-.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333335567788899999999999999999999999999999999999999999763221 1111 114454444321
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH--HHc-
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYCD-----PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL--LKQ- 1807 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~~-----~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l--~~~- 1807 (1935)
.. +...+.+.++.+..| ...++..++..+...|+++.|.+.++++++++|++....+.....+ +..
T Consensus 240 ~~------~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 240 MA------DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HH------hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC
Confidence 11 223456666666666 4599999999999999999999999999999998876432222222 223
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE--GILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1885 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife--~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~l 1885 (1935)
+.+.+.+.++++++..|.+.++.+...+|+++++.|++++|+..|+ .+++..|+..+ +..++.++.+.|+.+.|+.+
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 7899999999999999998544788899999999999999999999 67888998877 44999999999999999999
Q ss_pred HHHHHh
Q 000173 1886 FERAIS 1891 (1935)
Q Consensus 1886 feral~ 1891 (1935)
|++++.
T Consensus 393 ~~~~l~ 398 (409)
T TIGR00540 393 RQDSLG 398 (409)
T ss_pred HHHHHH
Confidence 999876
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK08582 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-10 Score=122.15 Aligned_cols=75 Identities=28% Similarity=0.647 Sum_probs=70.5
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.+++|++|.|+|++|++||+||.|++ +++||+|+|++++.++.++.+.|++||.|+|+|+++|. .++|.||+|+.
T Consensus 2 ~~kvG~iv~G~V~~I~~fG~fV~L~~-~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~ 76 (139)
T PRK08582 2 SIEVGSKLQGKVTGITNFGAFVELPE-GKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKA 76 (139)
T ss_pred CCcCCCEEEEEEEEEECCeEEEEECC-CCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 37899999999999999999999986 79999999999999999999999999999999999996 59999999985
|
|
| >cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=107.84 Aligned_cols=68 Identities=31% Similarity=0.503 Sum_probs=65.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
|+.+.|+|+++.++|+||+|.+++.||+|.+++++++..++.+.|++||.|+|+|+++|++++|+.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCCCCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 68899999999999999999999999999999999999999999999999999999999999999886
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-10 Score=107.08 Aligned_cols=69 Identities=26% Similarity=0.473 Sum_probs=66.2
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
|+.+.|+|+++.++|+||++.+++.||+|.+++++.+..++.+.|++||.++|+|+++|++++++.|||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecCCcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 788999999999999999999999999999999999888899999999999999999999999999985
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.8e-09 Score=141.92 Aligned_cols=247 Identities=15% Similarity=0.137 Sum_probs=133.7
Q ss_pred CCCcHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1668 APRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~-P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
..+|...|+++.... .-+...|..++..+.+.+.+++|+++++.+++.--. .+ ..++.++++++.+.| ..+.|
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~-~d---~~~~~~Li~~y~k~G--~~~~A 379 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-LD---IVANTALVDLYSKWG--RMEDA 379 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-CC---eeehHHHHHHHHHCC--CHHHH
Confidence 444444454443321 112334555555555555555555555555543111 00 234555566666666 34666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~-~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
.++|+++.+ +....|..++..|.+.|+.++|.++|++|.+. ...+...|..++..+... ..++|.++|+.+.+..+
T Consensus 380 ~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 380 RNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 666665532 23355666666666666666666666666543 234455555555555555 66666666666655433
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1904 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~ 1904 (1935)
-......|..+..++.+.|+.++|..+|++.- ...+..+|..++..+..+|+.+.|+.++++++. +.|.+. ..|.
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~-~~y~ 532 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKL-NNYV 532 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCC-cchH
Confidence 22223455666666666666666666665431 112334566666666666666666666666655 444444 3555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1905 KYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1905 ~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
..++.+.+.|..++|.++++...
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 66666666666666666666544
|
|
| >cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=106.59 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=65.4
Q ss_pred CCEEE-EEEEEE-ecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 762 NSVVH-GYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 762 G~~~~-G~V~~i-~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
|+++. |.|+++ .++|+||++.+|+.||+|.|++++++..++.+.|++||.|.|+|+++|+.++++.|||
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKDGLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCCCCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 67788 999998 7999999999999999999999999999999999999999999999999999999996
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-08 Score=129.92 Aligned_cols=254 Identities=13% Similarity=0.118 Sum_probs=163.9
Q ss_pred CCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000173 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1748 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~ 1748 (1935)
..|...|...+..+|+|....+--|.+.+..+++-.|..+|.+|+...|...-.-++-+|..+ ..++ ..+.|..
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf----~kl~--~~~~a~~ 220 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCF----WKLG--MSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHH----Hhcc--chhhHHH
Confidence 467778888888888888888888888888888888888888888655432222223344333 3334 2366777
Q ss_pred HHHHHHhcCCCH-HHHH-------------------------------------HHHHHHHHcCChHHHHHHHHHHHHhc
Q 000173 1749 VFQRALQYCDPK-KVHL-------------------------------------ALLGLYERTEQNKLADELLYKMIKKF 1790 (1935)
Q Consensus 1749 vferAl~~~~~~-~v~~-------------------------------------~l~~i~~~~~~~~~A~el~~~~~k~~ 1790 (1935)
.|+||++++|.. ..+. .+++.|.-.++|..+..+++.+++..
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 777777776643 3333 33334455566666666666666543
Q ss_pred CC---CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000173 1791 KH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1791 ~~---~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw 1866 (1935)
.. ....++.++..+..+ ++++|..+|..+++..|.+ ++-.+...||.+...|+++.|...||+.+..+|++....
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 22 233366667777777 7777777777777776655 345566667777777777777777777777777777766
Q ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000173 1867 SIYLDQEIRLG----DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1933 (1935)
Q Consensus 1867 ~~ya~~e~k~g----~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~ 1933 (1935)
..++.++...+ ..++|..+...++. ..|... ..|.....+.+ ++|......+|.+|++.+++.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~~d~-~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLE--QTPVDS-EAWLELAQLLE-QTDPWASLDAYGNALDILESK 446 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHh--cccccH-HHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHc
Confidence 66666665543 45667777777766 445444 35555555443 556655688888888877764
|
|
| >cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-10 Score=106.69 Aligned_cols=68 Identities=31% Similarity=0.564 Sum_probs=64.9
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
|+++.|+|+++.++|+||+|.+ ++.|++|++++++.+..++.+.|++||.|+|+|+++|+++++|.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGR-GVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCC-CCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999976 7999999999999999999999999999999999999999999886
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK08582 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-10 Score=118.91 Aligned_cols=79 Identities=25% Similarity=0.437 Sum_probs=75.0
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccccc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~ 1455 (1935)
+++|++|.|+|++|+++|+||.|+++++|+||+++++|.|+.++.+.|++||.|+|+|+++|. +++|.||+++....||
T Consensus 3 ~kvG~iv~G~V~~I~~fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~~~~~~ 81 (139)
T PRK08582 3 IEVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKAKDRPK 81 (139)
T ss_pred CcCCCEEEEEEEEEECCeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEecccCch
Confidence 789999999999999999999999999999999999999999999999999999999999996 5999999999887765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-08 Score=123.05 Aligned_cols=219 Identities=14% Similarity=0.061 Sum_probs=169.7
Q ss_pred CCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHH
Q 000173 1700 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKL 1778 (1935)
Q Consensus 1700 ~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~ 1778 (1935)
...+.+..-+.+++...+... ..+...|.....++...| ..+.|...|++|++..|.. ..|..++.+|...|++++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~-~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTD-EERAQLHYERGVLYDSLG--LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred hHHHHHHHHHHHHHccccCCc-HhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 456778888888886544322 233568999999999999 5599999999999999975 999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1779 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1857 (1935)
Q Consensus 1779 A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~ 1857 (1935)
|.+.|+++++..|+....|++++..+... ++++|.+.|+++++..|.+.. ...+..+....+++++|...|++++.
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~---~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY---RALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 999999999999999998742 22333344567899999999988776
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1858 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1858 ~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~-----~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
..+. +.|. +.......|+...+ ..|+.+... .+.|+.. ..|........+.|+.++|...|++|++.
T Consensus 194 ~~~~--~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~-ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 194 KLDK--EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLC-ETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred hCCc--cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5433 3444 23444556666554 355555531 1233334 46777777888999999999999999763
|
|
| >cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-10 Score=107.18 Aligned_cols=74 Identities=31% Similarity=0.556 Sum_probs=69.2
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecC-ceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~-~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
++|+++.|+|.++.++|+||+|.+. ++.|++|+|++++.++.++.+.|++||.|+++|+++|.+++++.||+|.
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 5799999999999999999999742 5999999999999999999999999999999999999999999999874
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c |
| >cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-10 Score=114.93 Aligned_cols=77 Identities=35% Similarity=0.513 Sum_probs=70.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-------------------CCccccCCCCcEEEEEEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-------------------ESPEKEFPIGKLVAGRVLSV 1436 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~-------------------~~~~~~f~~G~~V~~kVl~v 1436 (1935)
|++|++|.|.|+++.++|+||.|+.+++|++|+++++|.|. .++.+.|++||.|+|+|+++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~ 80 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSL 80 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEc
Confidence 57899999999999999999999999999999999999873 34778999999999999999
Q ss_pred eCC---CCEEEEEEecCcc
Q 000173 1437 EPL---SKRVEVTLKTSDS 1452 (1935)
Q Consensus 1437 d~~---~~ri~lSlk~~~~ 1452 (1935)
|++ +++|.||+|++..
T Consensus 81 d~~~~~~~~i~LSlr~~~v 99 (100)
T cd05693 81 DKSKSGKKRIELSLEPELV 99 (100)
T ss_pred cCCcCCCcEEEEEecHHHC
Confidence 987 7899999998754
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK07252 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-10 Score=114.90 Aligned_cols=76 Identities=32% Similarity=0.620 Sum_probs=71.1
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
++|+++.|+|++|.++|+||+|.+ ++.|++|+|++++.++.++...|++||.|+|+|+++|++.++|.||+|....
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~-~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~~ 77 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALEN-GTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLEE 77 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECC-CCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 579999999999999999999976 6999999999999999888899999999999999999999999999988533
|
|
| >cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-10 Score=104.93 Aligned_cols=68 Identities=37% Similarity=0.770 Sum_probs=62.9
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCc-ccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE-DHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~-~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
|+++.|+|+++.+||+||+|.+ +++||+|+++++| ....++.+.|++||.|+|+|+++|.+++||+||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~-~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDG-GIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCC-CCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 7899999999999999999986 7999999999996 566778889999999999999999999999875
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-08 Score=117.56 Aligned_cols=241 Identities=16% Similarity=0.194 Sum_probs=125.7
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 000173 1679 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1758 (1935)
Q Consensus 1679 l~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~ 1758 (1935)
+..+|++...|.++++++..++.+++.|++|++.....|+-+ .+|..||.-|....++ .+.+.+|-|+|...-
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~-----~aw~ly~s~ELA~~df--~svE~lf~rCL~k~l 107 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIME-----HAWRLYMSGELARKDF--RSVESLFGRCLKKSL 107 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcccc-----HHHHHHhcchhhhhhH--HHHHHHHHHHHhhhc
Confidence 345566666666666666666666666666666665555422 2555555555555522 555555555554444
Q ss_pred CHHHHHHHHHHHHH----------------------------------------------------cCChHHHHHHHHHH
Q 000173 1759 PKKVHLALLGLYER----------------------------------------------------TEQNKLADELLYKM 1786 (1935)
Q Consensus 1759 ~~~v~~~l~~i~~~----------------------------------------------------~~~~~~A~el~~~~ 1786 (1935)
...+|..|+....+ ..+.+..++.|.+|
T Consensus 108 ~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 108 NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 44444444443322 23344445555555
Q ss_pred HHhc-CCCHHHHHHHHHHHHHc--------------CHHHHHHHHHHHHHhCCC----------------CChHHHHHHH
Q 000173 1787 IKKF-KHSCKVWLRRVQRLLKQ--------------QQEGVQAVVQRALLSLPR----------------HKHIKFISQT 1835 (1935)
Q Consensus 1787 ~k~~-~~~~~vw~~~~~~l~~~--------------~~e~A~~ll~ralk~~p~----------------~~~~~~~~~~ 1835 (1935)
+... .+-.++|..|-.|.... -+..||+.|+.....-.. +..-.-|++|
T Consensus 188 l~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNw 267 (660)
T COG5107 188 LQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNW 267 (660)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhH
Confidence 4332 23344555555554432 133344444333221000 0001235555
Q ss_pred HHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000173 1836 AILEFKNGV-------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1908 (1935)
Q Consensus 1836 a~le~~~g~-------~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~ 1908 (1935)
..++...|- ..|-.-+|++++...|-...+|+.|....+..+|-++|....+|++. ..|. +-.+|..
T Consensus 268 IkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps----L~~~lse 341 (660)
T COG5107 268 IKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS----LTMFLSE 341 (660)
T ss_pred hhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc----hheeHHH
Confidence 555553331 23444556666666666666777777766667777777777777666 4442 4455566
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1909 YEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1909 ~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
+++-..+.+.+..+|+++.+-+.+
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHHHHH
Confidence 666666777777777777665543
|
|
| >cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-10 Score=101.97 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=66.4
Q ss_pred CCeEEEEEEEEecCcEEEEEEecC-ceeEEEeccccCCcccccccccccccCCCeEeeEEEeecCCCeEEEecc
Q 000173 670 GSLVSGVVDVVTPNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742 (1935)
Q Consensus 670 G~iv~g~V~~v~~~g~~V~l~~~~-~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~~vl~~d~~~~~i~ls~K 742 (1935)
|++|+|+|.++++++++|++ .+ +++|+||.+||||+.++++.+++++++||++..+|+++...+.+.||+|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l--~~~~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAI--LPEEIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCLSNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEe--cCCCcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEEeccccEEEEecC
Confidence 78999999999999999999 55 9999999999999999999999999999999888888888888999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK07252 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.3e-10 Score=113.83 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=72.3
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
++|+++.|.|++|+++|+||++.+++.||+|.++++++++.++...|++||.|+|+|+++|++++++.||++....
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~~ 77 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLEE 77 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999998754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9e-09 Score=140.05 Aligned_cols=243 Identities=12% Similarity=0.104 Sum_probs=200.5
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~-i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
+..+|...|+++ .+.+...|..++..+.+.|+.++|.++|++..+. +.+ + ...|..++......| ..+.
T Consensus 274 ~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p--d---~~t~~~ll~a~~~~g--~~~~ 343 (697)
T PLN03081 274 DIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI--D---QFTFSIMIRIFSRLA--LLEH 343 (697)
T ss_pred CHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcc--chHH
Confidence 355666667665 3457889999999999999999999999998753 222 1 246778888888889 4599
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1746 VVKVFQRALQYC--DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1746 a~~vferAl~~~--~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
|+++++.+++.. +...+|..++++|.+.|++++|.++|++|.+ .+...|..++..|.+. +.++|.++|+++...
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999875 3348999999999999999999999999975 3677899999999999 999999999999876
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK 1900 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k 1900 (1935)
.-... ...|..+...+.+.|..++|+.+|+.+.+.++- +...|..+++++.+.|+.++|..+|+++- ..|..
T Consensus 421 g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~-- 494 (697)
T PLN03081 421 GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTV-- 494 (697)
T ss_pred CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCH--
Confidence 43322 477888888899999999999999999876543 34579999999999999999999998742 33433
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1901 FLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1901 ~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
..|...+.....+|+.+.++.+++++++
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 4799999999999999999999888754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=123.28 Aligned_cols=230 Identities=17% Similarity=0.127 Sum_probs=189.0
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 000173 1677 RLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1756 (1935)
Q Consensus 1677 rll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~ 1756 (1935)
+++...|+++..|+..+-||+..+.+.+||..|-+|...-+ .- ...|++|..-..-.++. |+|...|.+|-+.
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~f----gpaWl~fghsfa~e~Eh--dQAmaaY~tAarl 375 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TF----GPAWLAFGHSFAGEGEH--DQAMAAYFTAARL 375 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cc----cHHHHHHhHHhhhcchH--HHHHHHHHHHHHh
Confidence 56677899999999999999999999999999999995433 22 24899999888888854 9999999999999
Q ss_pred CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC----C-ChH
Q 000173 1757 CDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR----H-KHI 1829 (1935)
Q Consensus 1757 ~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~----~-~~~ 1829 (1935)
.+.- .-.+-++--|.+.+.++.|...|..+..++|..+-+...++-..+.. .+.+|..+|+.++...+. . .-.
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 8864 44455555677899999999999999999999998888888888877 999999999999843322 1 113
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK--MKFLFKKYL 1907 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~--~k~l~~~yl 1907 (1935)
++|.++|-.+.+.+.+++|...|+++|...|++.+.....+-.+...|+++.|...|.+++. +.|.+ +..+.+.++
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999989999999999999999999998 55554 335667776
Q ss_pred HH-HHHcCC
Q 000173 1908 EY-EKSVGE 1915 (1935)
Q Consensus 1908 ~~-E~~~G~ 1915 (1935)
+- +..+|.
T Consensus 534 e~~~~~~~~ 542 (611)
T KOG1173|consen 534 EDSECKSGV 542 (611)
T ss_pred Hhhhhhccc
Confidence 54 455554
|
|
| >PRK05807 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.7e-10 Score=116.56 Aligned_cols=74 Identities=31% Similarity=0.643 Sum_probs=69.5
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.+++|++|.|+|+.+.+||+||.| + +..||+|+|++++.++.++...|++||.|+|+|+++|. +++|.||+|+.
T Consensus 2 ~~~vG~vv~G~Vt~i~~~GafV~L-~-~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 2 TLKAGSILEGTVVNITNFGAFVEV-E-GKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQA 75 (136)
T ss_pred CccCCCEEEEEEEEEECCeEEEEE-C-CEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 478999999999999999999999 4 68999999999999999999999999999999999997 79999999984
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=129.37 Aligned_cols=246 Identities=13% Similarity=0.113 Sum_probs=132.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000173 1674 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1753 (1935)
Q Consensus 1674 ~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferA 1753 (1935)
...+.+...|.++.+|+.++..+++.. .-.+..+|.+|+...-...-.-...+....+.++...|+ .+.|...|.+|
T Consensus 402 ~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~--~~~A~~~f~~A 478 (1018)
T KOG2002|consen 402 VLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN--IEKALEHFKSA 478 (1018)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC--hHHHHHHHHHH
Confidence 334555555677777777666554433 333355555555321111000001234455666666663 36677777776
Q ss_pred HhcCC----CH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1754 LQYCD----PK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1754 l~~~~----~~-------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
+.... .. ++-+.++.+++..++++.|.++|...++.+|...+.+++++.+.... +..+|...+..++.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 65521 11 24566666666666666666777666666666666666666444444 55666666666665
Q ss_pred hCCCCChHHHHHHHHHHHHHcCC------------------------------------------------HHHHHHHHH
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGV------------------------------------------------ADRGRSMFE 1853 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~------------------------------------------------~e~Ar~ife 1853 (1935)
.+..+ +.+|..+|.+++.... +++|.++|.
T Consensus 559 ~d~~n--p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~ 636 (1018)
T KOG2002|consen 559 IDSSN--PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYG 636 (1018)
T ss_pred cccCC--cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 54333 3555555554443222 566777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1854 GILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1854 ~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
++|+.+|+|+..-+-.+-.+...|.+..|+.+|.++.+ ...+.. ..|.........+|.+-.|.++|+.++
T Consensus 637 kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE--a~~~~~-dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 637 KVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE--ATSDFE-DVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHH--HHhhCC-ceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777755555555555555666666666655554 111111 344444444444555555555555554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.5e-08 Score=119.70 Aligned_cols=250 Identities=11% Similarity=0.058 Sum_probs=211.5
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+..+.-+.++.++..+|-+.....-+++.+..+++..+-..+..+.++..|... --|++..-++...+.+ .+|
T Consensus 259 ~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a-----~sW~aVg~YYl~i~k~--seA 331 (611)
T KOG1173|consen 259 RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA-----LSWFAVGCYYLMIGKY--SEA 331 (611)
T ss_pred hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC-----cchhhHHHHHHHhcCc--HHH
Confidence 344555667778888888777777777888899998888888888888877544 5799999999999965 999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
|..|-+|....+.. ..|+.++..|.-.+..+.|...|.+|.+.++.+..-.+-++.=+.+. +++.|.+.|..|+..+|
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 99999999999987 99999999999999999999999999999987766666666666667 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSE----YPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~----~Pk~---~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk 1897 (1935)
.+ +-+....|-+.|..+.+.+|..+|+.++.. .+.. ..+|+.++..+.+.+.++.|...|+++|. +.|+
T Consensus 412 ~D--plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k 487 (611)
T KOG1173|consen 412 SD--PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPK 487 (611)
T ss_pred Cc--chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCC
Confidence 98 467888888899999999999999999943 2222 23799999999999999999999999999 8887
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1898 KMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.+ ..+....-.....|+.+.|...|.+|+-
T Consensus 488 ~~-~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 488 DA-STHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred ch-hHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 76 4555555566778999999999999874
|
|
| >cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.2e-10 Score=104.83 Aligned_cols=74 Identities=32% Similarity=0.558 Sum_probs=69.8
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~-gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~ 833 (1935)
++|+.+.|+|++++++|+||++.+ ++.||+|.+++++++..++.+.|++||.|+|+|+++|++++++.||+|++
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~ 75 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKAS 75 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEee
Confidence 368999999999999999999985 89999999999998888899999999999999999999999999999875
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=115.36 Aligned_cols=228 Identities=13% Similarity=0.083 Sum_probs=196.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLG 1768 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~ 1768 (1935)
.+++.+|+++|-+.+|..-++.+|+..+. ...+.-+...+.+.. +.+.|..+|...+...|.+ ++...++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~------~dTfllLskvY~rid--QP~~AL~~~~~gld~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH------PDTFLLLSKVYQRID--QPERALLVIGEGLDSFPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc------hhHHHHHHHHHHHhc--cHHHHHHHHhhhhhcCCchhhhhhhhHH
Confidence 45677889999999999999999987664 235666677788888 4599999999999999987 88888999
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000173 1769 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1847 (1935)
Q Consensus 1769 i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~ 1847 (1935)
+++..+++++|.++|+..++..+.+.+..-..+.-++.. +++-|..+|.|.|+.--.+ ++++.+.|...+-.+++|.
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhh
Confidence 999999999999999999999988888777777777777 9999999999999986555 6999999999999999999
Q ss_pred HHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1848 GRSMFEGILSEY--P-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1924 (1935)
Q Consensus 1848 Ar~ife~al~~~--P-k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~ 1924 (1935)
+..-|+|++... | ...|+|+.+.......||..-|...|.-++. ..+.+. .-++...-++.+.|+++.|+.++.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~-ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHG-EALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchH-HHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999999764 3 3578999999999999999999999999998 666666 578888889999999999999998
Q ss_pred HHHHHH
Q 000173 1925 KAMEYV 1930 (1935)
Q Consensus 1925 rAle~v 1930 (1935)
-|....
T Consensus 454 ~A~s~~ 459 (478)
T KOG1129|consen 454 AAKSVM 459 (478)
T ss_pred HhhhhC
Confidence 886543
|
|
| >cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.1e-10 Score=103.68 Aligned_cols=71 Identities=32% Similarity=0.650 Sum_probs=67.8
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
|++|.|+|+++.++|+||+|.+ +++|+||+++++++++.++.+.|++||.++++|+++|++++++.||+|.
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~ 71 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGD-GVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKA 71 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCC-CCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEE
Confidence 7899999999999999999986 7999999999999999899999999999999999999999999999986
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=103.58 Aligned_cols=73 Identities=25% Similarity=0.331 Sum_probs=68.7
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC--CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~--gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~ 832 (1935)
+.|+.+.|.|.++.++|+||++.+ ++.||+|.+++++.+..++.+.|++||.|+|+|+++|.+++++.||+++
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 479999999999999999999974 6999999999999999999999999999999999999999999999873
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c |
| >cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.5e-10 Score=103.01 Aligned_cols=68 Identities=29% Similarity=0.423 Sum_probs=63.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCc-ccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-GQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~-~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
|+.+.|.|.+++++|+||++.+++.||+|.++++| ....++.+.|++||+|+|+|+++|.+++|+.||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDGGIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCCCCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 67899999999999999999999999999999996 567788889999999999999999999999875
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=102.57 Aligned_cols=71 Identities=34% Similarity=0.627 Sum_probs=63.9
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcc-cccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~-~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
+++|+++.|+|+++.+||+||+|.+ +++||+|++++.+. +..+..+.|++||.|+++|+++|.++++|.||
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~-~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEE-GVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCC-CCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 5789999999999999999999987 69999999999864 44466788999999999999999999999875
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=100.35 Aligned_cols=66 Identities=27% Similarity=0.516 Sum_probs=60.7
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
|++|.|+|+++.++|+||+|.+ +++|++|.+++++.+.. .+.|++||.|+|+|+.+|+++++|.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~-~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLS-SFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcC-CceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999976 79999999999876544 778999999999999999999999886
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.3e-08 Score=121.88 Aligned_cols=227 Identities=12% Similarity=0.121 Sum_probs=180.3
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-hhhHH--HHHHHHHH
Q 000173 1657 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE-ENEKL--NIWVAYFN 1733 (1935)
Q Consensus 1657 ~~~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e-e~Ekl--~lW~ayl~ 1733 (1935)
...+.....++.+++...+++++..+|++..+....+..+++.+++++|.+++.+..+...... +..++ ..|..++.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3344445566788899999999999999999999999999999999999999999997655422 12222 24444443
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHH
Q 000173 1734 LENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1811 (1935)
Q Consensus 1734 le~~~g~~~~e~a~~vferAl~~~~-~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~ 1811 (1935)
...... ..+.+.++++..-...+ ...++..++..+...|+.++|...++++++ .+.+..+...|+.. .. ++++
T Consensus 238 ~~~~~~--~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~ 312 (398)
T PRK10747 238 QAMADQ--GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQ 312 (398)
T ss_pred HHHHhc--CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHH
Confidence 322222 23444444444433333 248999999999999999999999999998 45677777777764 34 8999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1812 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+.+.+++.++..|.+ +.++..+|+++++.+++++|+..|++++...|+..+ +..+++++.+.|+.+.|..+|++++.
T Consensus 313 al~~~e~~lk~~P~~--~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 313 LEKVLRQQIKQHGDT--PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999988 589999999999999999999999999999999755 55689999999999999999999987
|
|
| >cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=99.13 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=60.6
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
|+.+.|.|.+++++|+||++.+++.||+|.++++..... .+.|++||.|.|+|+++|++++|+.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLSSFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcCCceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 788999999999999999999999999999999865543 678999999999999999999999886
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-09 Score=100.57 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=69.0
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000173 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1935)
Q Consensus 1379 G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~ 1450 (1935)
|+++.|+|+++.++|+||+++.+++|++|++++++.+..++.+.|++||.++++|+++|++++++.||+|..
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~~ 72 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGDGVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKAK 72 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCCCCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEEc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-09 Score=100.42 Aligned_cols=70 Identities=30% Similarity=0.534 Sum_probs=66.4
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
|++|.|+|.++.++|+||.|.. +..|++|.+|+++.+..++.+.|++||.++|+|+++|+++++|.||+|
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGY-KSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCC-CceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999964 799999999999999999999999999999999999988999999975
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-09 Score=100.65 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=64.6
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~-gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
..|+.+.|.|+++++||+||++.+ +..||+|.+++++.++.++.+.|++||+|+|+|+++|.++ |+.||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 369999999999999999999955 3799999999999999999999999999999999999976 999986
|
pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-07 Score=133.06 Aligned_cols=247 Identities=12% Similarity=0.058 Sum_probs=158.5
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..+|...|++++...+-+...|...+..+.+.|.++.+++++..+++.--. .+ ..+..++++++.+.| ..+.|.
T Consensus 471 ~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~-~~---~~~~naLi~~y~k~G--~~~~A~ 544 (857)
T PLN03077 471 CFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG-FD---GFLPNALLDLYVRCG--RMNYAW 544 (857)
T ss_pred HHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC-cc---ceechHHHHHHHHcC--CHHHHH
Confidence 334444555554433334445555555555555555555555555542111 10 124456667777777 557777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~-~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
.+|++. .+....|..++..|.+.|+.++|.++|++|...- ..+...|..++..+.+. .+++|.++|+.+....+-
T Consensus 545 ~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 545 NQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 777775 4455778888888888888888888888777542 34455566666666666 778888888877755444
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
......|..+..++.+.|++++|..+|+.. ...| +..+|..++..+..+++.+.++...+++++ +.|.+. ..|..
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~-~~y~l 696 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSV-GYYIL 696 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCc-chHHH
Confidence 444567777777777888888888777764 2223 356788777777777888888777777777 666665 46666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
+...+...|+.++|.++.+...+
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHHH
Confidence 66677777887777777766543
|
|
| >cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=100.52 Aligned_cols=71 Identities=27% Similarity=0.407 Sum_probs=64.3
Q ss_pred cCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcc-cccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-QRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~-~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
+++|+.+.|.|++|+++|+||++.+++.||+|.+++++. ...++...|++||.|+|+|+++|.+++++.|+
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCCCCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 358999999999999999999999999999999999864 44577788999999999999999999999874
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >PHA02945 interferon resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-09 Score=98.98 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=67.9
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecC-ceeEEeecccc--CcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSEL--SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~-~v~Gl~h~sel--s~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..+|+++-|+|+. .+||+||.|+.- +..||+|+||+ +..++++ .+.+ +||.|.|+|+++|+.++.|.||||.-
T Consensus 9 P~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V 84 (88)
T PHA02945 9 PNVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRM 84 (88)
T ss_pred CCCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEc
Confidence 4789999999999 999999999864 89999999955 9999999 8888 99999999999999999999999973
|
|
| >cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-09 Score=101.74 Aligned_cols=71 Identities=34% Similarity=0.601 Sum_probs=65.6
Q ss_pred CcEEEeEEEEEeeceEEEEEecC--ceeEEeeccccCcccc-cCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1469 GDIVIGQIKRVESYGLFITIENT--NLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~--~v~Gl~h~sels~~~~-~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
|+++.|+|+++.+||+||+|.+. +++||+|++++++.+. .++.+.|++||.|+++|+++| +++|.||+|..
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~ 74 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDV 74 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEec
Confidence 78999999999999999999853 6999999999999886 888899999999999999999 89999999874
|
The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae. |
| >PRK08059 general stress protein 13; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-09 Score=110.87 Aligned_cols=78 Identities=36% Similarity=0.748 Sum_probs=73.2
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
+.++++|++|.|+|.++.++|+||.|.+ ++.|++|++++++.++.++...|++||.|+|+|+++|.++++|.||+|..
T Consensus 2 ~~~~k~G~iv~G~V~~i~~~G~fV~i~~-~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~ 79 (123)
T PRK08059 2 MSQYEVGSVVTGKVTGIQPYGAFVALDE-ETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRAT 79 (123)
T ss_pred cccCCCCCEEEEEEEEEecceEEEEECC-CCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEc
Confidence 3568999999999999999999999986 79999999999999988888899999999999999999999999999986
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.1e-08 Score=135.17 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=44.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1916 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~ 1916 (1935)
..|.+.|+.++|+.+|+.. +.+...|+.++..+.++|+.++|..+|++.......|... .|...+....+.|..
T Consensus 532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~--T~~~ll~a~~~~g~v 605 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV--TFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc--cHHHHHHHHhhcChH
Confidence 4444555555555555553 3344455555555555565555666665555544444433 344444444445555
Q ss_pred HHHHHHHHHHH
Q 000173 1917 ERIEYVKQKAM 1927 (1935)
Q Consensus 1917 e~a~~v~~rAl 1927 (1935)
+++..+|+.+.
T Consensus 606 ~ea~~~f~~M~ 616 (857)
T PLN03077 606 TQGLEYFHSME 616 (857)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-07 Score=118.66 Aligned_cols=248 Identities=17% Similarity=0.198 Sum_probs=183.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL---NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1759 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl---~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~ 1759 (1935)
|.-...-..++..|...+++++|..++++|++.+--+...+.+ ..-..+..++...+++ .+|..+|++|++....
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~--~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY--DEAVNLYEEALTIREE 273 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHHH
Confidence 4444555567888899999999999999999863211111111 1222355667778854 9999999999987531
Q ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC-----CCHH---HHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1760 ---------KKVHLALLGLYERTEQNKLADELLYKMIKKFK-----HSCK---VWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1760 ---------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~-----~~~~---vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
-.++..|+.+|...|++.+|...+++++.++. ..+. .....+..+... ++++|..+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 18899999999999999999999999998873 2233 344455555555 99999999999988
Q ss_pred hC---CCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC-C----HHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1822 SL---PRHKH---IKFISQTAILEFKNGVADRGRSMFEGILSEY----PK-R----TDLWSIYLDQEIRLGDVDLIRGLF 1886 (1935)
Q Consensus 1822 ~~---p~~~~---~~~~~~~a~le~~~g~~e~Ar~ife~al~~~----Pk-~----~dlw~~ya~~e~k~g~~e~ar~lf 1886 (1935)
.. |...| ..++.++|.+++..|++.+|+.+|++|++.. .+ + ..+|.- +-.+.+.+.+..|-.+|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l-a~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL-AEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH-HHHHHHhcccchHHHHH
Confidence 65 33333 4789999999999999999999999999875 22 2 235554 44557888899899999
Q ss_pred HHHHhc-----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000173 1887 ERAISL-----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1934 (1935)
Q Consensus 1887 eral~~-----~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~ 1934 (1935)
+++... ...|.-. ..+......+...|+++.|..+-++++.+-+..+
T Consensus 433 ~~~~~i~~~~g~~~~~~~-~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVT-YTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred HHHHHHHHHhCCCCCchH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 988751 1233333 6688888889999999999999999998876544
|
|
| >cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-09 Score=98.62 Aligned_cols=70 Identities=27% Similarity=0.334 Sum_probs=67.4
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1379 G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
|++|.|+|.++.++|+||+|+.+.+|++|.+++++.+..+|.+.|++||.++++|++++++++++.||++
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGYKSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999998999999999999999999999999999999999999988999999985
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-09 Score=98.28 Aligned_cols=69 Identities=35% Similarity=0.783 Sum_probs=65.1
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
|+++.|+|+++.++|+||.|.+ ++.|++|++++++.++.++.+.|++||.|+++|+++|+ ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGG-GISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECC-CCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 7899999999999999999975 79999999999999988888999999999999999998 899999986
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.9e-08 Score=121.63 Aligned_cols=270 Identities=18% Similarity=0.256 Sum_probs=179.6
Q ss_pred HHHHHHHHHhcc-CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhccccchhhHHH
Q 000173 1655 EIRAAEERLLEK-DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADVEKARSIAERALQTINIREENEKLN 1726 (1935)
Q Consensus 1655 ~~~~~e~~~~~~-~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~-------~~e~dkAr~v~erAl~~i~~~ee~Ekl~ 1726 (1935)
+|..++.-+-.. +.+.....|+++|. +-++..+|..|+.|... .+++++-|.+|+|||+...++-. +-..
T Consensus 152 ~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~ 229 (881)
T KOG0128|consen 152 EWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAA 229 (881)
T ss_pred HHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHH
Confidence 466666655433 36777778888864 56899999999999863 35789999999999998776533 4567
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc-----------------------------------------------CC
Q 000173 1727 IWVAYFNLENEYGNP-PEEAVVKVFQRALQY-----------------------------------------------CD 1758 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~-~~e~a~~vferAl~~-----------------------------------------------~~ 1758 (1935)
+|..|..++..+-.. ..++...+|.+.+.. .+
T Consensus 230 ~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~ 309 (881)
T KOG0128|consen 230 IWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEP 309 (881)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhH
Confidence 999988887654210 012334444444432 22
Q ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CHHHHHHHHHHHHHhCCCC---------
Q 000173 1759 P-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRH--------- 1826 (1935)
Q Consensus 1759 ~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~--~~e~A~~ll~ralk~~p~~--------- 1826 (1935)
. ...|+.|++....+|........+++++..+......|+.|+.++-.. -.+.+...+.||+.++|..
T Consensus 310 ~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rall 389 (881)
T KOG0128|consen 310 IKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALL 389 (881)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHH
Confidence 2 267888888889999999999999999988887788888887755443 2223333333333333321
Q ss_pred ---------------------------------------------------------------------ChHHHHHHHHH
Q 000173 1827 ---------------------------------------------------------------------KHIKFISQTAI 1837 (1935)
Q Consensus 1827 ---------------------------------------------------------------------~~~~~~~~~a~ 1837 (1935)
....+...+|+
T Consensus 390 AleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~ 469 (881)
T KOG0128|consen 390 ALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQ 469 (881)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 11244455555
Q ss_pred HHH-HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000173 1838 LEF-KNGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1915 (1935)
Q Consensus 1838 le~-~~g~~e~Ar~ife~al~~~Pk~~d-lw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~ 1915 (1935)
+|. ..++++.||.+....+..---+.. .|..|++++..+|+...+|.++.+|......|..+..+...|..||..+|+
T Consensus 470 ~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gt 549 (881)
T KOG0128|consen 470 VEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGT 549 (881)
T ss_pred HHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhcccc
Confidence 554 234566666666665554444444 788888888888888888888888887666666566788888888888888
Q ss_pred HHHHHHHHHHH
Q 000173 1916 EERIEYVKQKA 1926 (1935)
Q Consensus 1916 ~e~a~~v~~rA 1926 (1935)
.+....+-++-
T Consensus 550 l~~~~~~~~~~ 560 (881)
T KOG0128|consen 550 LESFDLCPEKV 560 (881)
T ss_pred HHHHhhhHHhh
Confidence 77655444433
|
|
| >PRK05807 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.1e-09 Score=109.35 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=70.5
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
+++|++|.|.|+.++++|+||.| .+..|+||++++++.|+.++.+.|++||.|+++|+++|. +++|.||+|...
T Consensus 3 ~~vG~vv~G~Vt~i~~~GafV~L-~~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~~ 76 (136)
T PRK05807 3 LKAGSILEGTVVNITNFGAFVEV-EGKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQAM 76 (136)
T ss_pred ccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEecc
Confidence 67899999999999999999999 578999999999999999999999999999999999997 799999999865
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.4e-08 Score=109.54 Aligned_cols=196 Identities=17% Similarity=0.135 Sum_probs=179.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-
Q 000173 1729 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1807 (1935)
Q Consensus 1729 ~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~- 1807 (1935)
.++...+.++|.+ ..|+..|+.+|+..+.-..|.-+..+|.+..+.+.|..+|...+..||.+....+..++.+...
T Consensus 227 ~Q~gkCylrLgm~--r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMP--RRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcCh--hhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 3677888999955 8999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
+.++|.++|+++++..|.+ ++.+...|.-+|--+++|.|...|.|+|+.--.+..++...+-..+-.+.+|-+..-|+
T Consensus 305 ~~~~a~~lYk~vlk~~~~n--vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPIN--VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcCCcc--ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999999999877 68888888889989999999999999999998999999999998899999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1888 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1888 ral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
||++..-.|..+-++|...-...-..||...|.++|+-|+.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 99996555677668999988877888999999999988863
|
|
| >PRK08059 general stress protein 13; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.7e-09 Score=107.29 Aligned_cols=81 Identities=20% Similarity=0.419 Sum_probs=76.3
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++++|+++.|.|.++.++|+||.++.+++|++|++++++.++.++.+.|++||.|.|+|+++|.+++++.+|++....+
T Consensus 3 ~~~k~G~iv~G~V~~i~~~G~fV~i~~~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~~~~ 82 (123)
T PRK08059 3 SQYEVGSVVTGKVTGIQPYGAFVALDEETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRATEEA 82 (123)
T ss_pred ccCCCCCEEEEEEEEEecceEEEEECCCCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEcccC
Confidence 45889999999999999999999999999999999999999999998999999999999999999999999999998765
Q ss_pred c
Q 000173 1454 T 1454 (1935)
Q Consensus 1454 ~ 1454 (1935)
|
T Consensus 83 ~ 83 (123)
T PRK08059 83 P 83 (123)
T ss_pred c
Confidence 4
|
|
| >cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.6e-09 Score=97.31 Aligned_cols=68 Identities=31% Similarity=0.603 Sum_probs=64.0
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
|+++.|+|+++.++|+||+|.+ +..|+||.+++++.+..++...|++||.|+|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~-~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGV-KQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCC-CCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 7899999999999999999976 7999999999999988888889999999999999999999999876
|
The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea. |
| >cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.86 E-value=9e-09 Score=95.06 Aligned_cols=67 Identities=27% Similarity=0.477 Sum_probs=61.6
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
|+.+.|.|.++.++|+||+| +|+.||+|.+++++.+..++.. .+||.+.|+|+++|.+++++.||.|
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-EGVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 67899999999999999999 8899999999999887777665 4999999999999999999999975
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.4e-09 Score=95.80 Aligned_cols=69 Identities=30% Similarity=0.518 Sum_probs=65.7
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
|+.+.|.|++++++|+||++.+++.||+|.+++++.++.++.+.|++||.|+|+|+++|+ ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGGGISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECCCCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 678999999999999999999999999999999998888999999999999999999998 899999985
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-08 Score=120.42 Aligned_cols=217 Identities=14% Similarity=0.073 Sum_probs=137.5
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
+++.++|.-.||.++..+|.+..+|..+...+.++..-..|...++||++.-|.+- .+.++++--+...| -..
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl-----eaLmaLAVSytNeg--~q~ 370 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL-----EALMALAVSYTNEG--LQN 370 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH-----HHHHHHHHHHhhhh--hHH
Confidence 46699999999999999999999999999999999999999999999997655322 23333333333334 224
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH---------HHcCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHc-CHHHH
Q 000173 1745 AVVKVFQRALQYCDPKKVHLALLGLY---------ERTEQNKLADELLYKMIKKFK--HSCKVWLRRVQRLLKQ-QQEGV 1812 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~~v~~~l~~i~---------~~~~~~~~A~el~~~~~k~~~--~~~~vw~~~~~~l~~~-~~e~A 1812 (1935)
+|...+...+...|.. .|..-+..- .....+....++|-.|....+ ..+++...++-.|... ++++|
T Consensus 371 ~Al~~L~~Wi~~~p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHhCccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 5566666665544321 111111000 011123344455555554444 5566666666655555 66666
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1813 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1813 ~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
...|+-||+..|.+. .+|-++|..+---.+.++|...|.+||+..|....+|+.++--++.+|.+.+|-..|-+||.
T Consensus 450 iDcf~~AL~v~Pnd~--~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDY--LLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchH--HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666666666666653 66666666665555666666666666666666666666666666666666666666666665
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.6e-07 Score=114.86 Aligned_cols=234 Identities=15% Similarity=0.100 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHH
Q 000173 1688 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLAL 1766 (1935)
Q Consensus 1688 lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l 1766 (1935)
..+.-|.+....|+++.|..++..+++..|-. ...|..+...+.+.| +.+++...+--|...+|.. ..|..+
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~-----~~ay~tL~~IyEqrG--d~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRN-----PIAYYTLGEIYEQRG--DIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc-----hhhHHHHHHHHHHcc--cHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 34455666667799999999999999876643 247999999999999 6799999999999888875 999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC---hHHHHHHHHHHHHHc
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK---HIKFISQTAILEFKN 1842 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~---~~~~~~~~a~le~~~ 1842 (1935)
+.+..+.+.+..|+-+|.++++..|.+....+.++..+.+. +...|..-|.++++.+|... -......+++.+..+
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 99999999999999999321 124556667777777
Q ss_pred CCHHHHHHHHHHHHHh----------------------------------------------------------------
Q 000173 1843 GVADRGRSMFEGILSE---------------------------------------------------------------- 1858 (1935)
Q Consensus 1843 g~~e~Ar~ife~al~~---------------------------------------------------------------- 1858 (1935)
++-++|.+.++.++..
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 7778888888777220
Q ss_pred ---------------------------------C--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH
Q 000173 1859 ---------------------------------Y--P-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1902 (1935)
Q Consensus 1859 ---------------------------------~--P-k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l 1902 (1935)
+ | .+.+++...++.++..|.+..|..+|-.++. .++-+--++
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~--~~~~~~~~v 451 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN--REGYQNAFV 451 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc--Cccccchhh
Confidence 0 1 1244666677777778999999999999988 333332389
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1903 FKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1903 ~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
|.+....+...|..+.|...|++++...
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~ 479 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA 479 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998753
|
|
| >cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.1e-09 Score=95.63 Aligned_cols=68 Identities=31% Similarity=0.440 Sum_probs=64.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
|+.+.|+|++++++|+||++.+++.||+|.+++++.+..++...|++||.|+|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGVKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCCCCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 67899999999999999999999999999999999888888889999999999999999999999876
|
The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea. |
| >cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=94.07 Aligned_cols=67 Identities=30% Similarity=0.370 Sum_probs=59.9
Q ss_pred CcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEe
Q 000173 586 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1935)
Q Consensus 586 G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k 655 (1935)
|+++.|+|+++.++|++|+| +++.||+|.+++++....++.+ .+||.++|+|+++|++++++.||.+
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-EGVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 78999999999999999999 8999999999998765555544 4899999999999999999999974
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.8e-07 Score=107.41 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=184.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~-e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
+..++|...++++|..+|++..+|......+..++ .+++|...++++++..|.. ..+|.....+...++....+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-----yqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-----YQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-----hHHhHHHHHHHHHcCchhhH
Confidence 44788889999999999999999999988888888 6899999999999765532 45898777666677731126
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CHHHHHHH
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--------QQEGVQAV 1815 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~--------~~e~A~~l 1815 (1935)
.+...+++|++.+|.+ .+|...+-++...+++++|.+.+.++++..+.+..+|...+..+... ..+++.++
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 6788999999999875 99999999999999999999999999999999999999988665432 23567888
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------
Q 000173 1816 VQRALLSLPRHKHIKFISQTAILEFKN----GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-------------- 1877 (1935)
Q Consensus 1816 l~ralk~~p~~~~~~~~~~~a~le~~~----g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g-------------- 1877 (1935)
..+++...|.+. .+|..+..++... +...+|...+.++++..|++..+..-+++++....
T Consensus 206 ~~~aI~~~P~N~--SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANPRNE--SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCCCCc--CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 889999999885 7898888888773 44577999999999999999998888888887522
Q ss_pred ----CHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000173 1878 ----DVDLIRGLFERAISLSLPPKKMKFLFK 1904 (1935)
Q Consensus 1878 ----~~e~ar~lferal~~~~~pk~~k~l~~ 1904 (1935)
..++|..+++.+ . +..|=+. .+|.
T Consensus 284 ~~~~~~~~a~~~~~~l-~-~~d~ir~-~yw~ 311 (320)
T PLN02789 284 EELSDSTLAQAVCSEL-E-VADPMRR-NYWA 311 (320)
T ss_pred cccccHHHHHHHHHHH-H-hhCcHHH-HHHH
Confidence 236678888776 3 4666555 3555
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-07 Score=114.93 Aligned_cols=228 Identities=18% Similarity=0.163 Sum_probs=182.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 000173 1693 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYE 1771 (1935)
Q Consensus 1693 ~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~ 1771 (1935)
+.-+++.|++.+|.-.||.|++.-| +....|..+.-.....+ .+..|...++||+++.|.+ .+.++|+-.|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP-----~haeAW~~LG~~qaENE--~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDP-----QHAEAWQKLGITQAENE--NEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhCh-----HHHHHHHHhhhHhhhcc--chHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 3445788999999999999998755 34679998888877777 5588999999999999986 99999999999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHH----H-----HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1772 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQ----R-----LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~----~-----l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
..+--..|..++...+...+ +..|+.-+. + +... .+....++|-.|-..+|....+++...++-+++-
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 99999999999998876432 222322210 0 0111 4566677888888888876668999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1921 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~ 1921 (1935)
.|++++|...|+.||+..|.+.-+|+.|.--+......++|...|.||+. +.|.-...-|+.-| -....|.+++|-.
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgI-S~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGI-SCMNLGAYKEAVK 519 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhh-hhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 77765532333333 3445788988888
Q ss_pred HHHHHHHHHHh
Q 000173 1922 VKQKAMEYVES 1932 (1935)
Q Consensus 1922 v~~rAle~v~~ 1932 (1935)
.|-.|+..-+.
T Consensus 520 hlL~AL~mq~k 530 (579)
T KOG1125|consen 520 HLLEALSMQRK 530 (579)
T ss_pred HHHHHHHhhhc
Confidence 88888876543
|
|
| >cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-08 Score=99.46 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=67.5
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCc----ccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE----DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~----~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
+++|++|.|+|+++.++|+||.|.+ ++.|++|++++++ ....+..+.|++||.++|+|+++|++ +++.||+|..
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~-~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~ 81 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINS-PYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSL 81 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCC-CeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCcc
Confidence 4799999999999999999999975 7999999999985 44566778899999999999999866 9999999885
Q ss_pred cc
Q 000173 1542 YF 1543 (1935)
Q Consensus 1542 ~~ 1543 (1935)
.+
T Consensus 82 ~~ 83 (86)
T cd05789 82 KY 83 (86)
T ss_pred cc
Confidence 43
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.2e-09 Score=132.24 Aligned_cols=101 Identities=26% Similarity=0.486 Sum_probs=78.0
Q ss_pred EEEeCCCCEEEEEEecCcccccccccccc-cC--CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccC----ccc
Q 000173 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINN-LS--NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS----EDH 1506 (1935)
Q Consensus 1434 l~vd~~~~ri~lSlk~~~~~~~~~~~~~~-~~--~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels----~~~ 1506 (1935)
++++ +++.|.++-............+.. .. .+++|++|.|+|++|.+||+||+|.+ +++||+|+|||+ +.+
T Consensus 611 Idi~-d~G~V~I~a~d~~~~~~A~~~I~~i~~~~~~~vG~i~~GkV~~I~dfGaFVel~~-G~eGLvHISeisdls~~~r 688 (719)
T TIGR02696 611 ISIE-DDGTVYIGAADGPSAEAARAMINAIANPTMPEVGERFLGTVVKTTAFGAFVSLLP-GKDGLLHISQIRKLAGGKR 688 (719)
T ss_pred EEEe-cCcEEEEEeCCHHHHHHHHHHHHHhhCcCcCCCCCEEEEEEEEEECceEEEEecC-CceEEEEhhhccccccccC
Confidence 4566 367777776543221100111111 12 57999999999999999999999986 799999999996 468
Q ss_pred ccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1507 VDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1507 ~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
+.++.+.|++||.|+++|+++| +++||+|+
T Consensus 689 v~~~~dv~kvGd~V~VKVl~ID-~~gKI~L~ 718 (719)
T TIGR02696 689 VENVEDVLSVGQKIQVEIADID-DRGKLSLV 718 (719)
T ss_pred cCCHHHcCCCCCEEEEEEEEEC-CCCCeeec
Confidence 8999999999999999999999 58899886
|
Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase. |
| >COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.8e-09 Score=115.72 Aligned_cols=75 Identities=33% Similarity=0.651 Sum_probs=71.5
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecC-ceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~-~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
..+|++|-|+|++|.+||+||.|+.- ++.||+|+||++..++.++.+.+++||.|-|+||++|++++.|.||||.
T Consensus 9 PeeGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkr 84 (269)
T COG1093 9 PEEGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKR 84 (269)
T ss_pred CCCCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhh
Confidence 36899999999999999999999853 7999999999999999999999999999999999999999999999987
|
|
| >cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=93.06 Aligned_cols=68 Identities=40% Similarity=0.756 Sum_probs=63.7
Q ss_pred CCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1468 ~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
+|+++.|+|.++.++|+||+|. ++.|++|.+++++.++.++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~--~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG--GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC--CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 5899999999999999999995 5999999999998888888899999999999999999999999876
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-07 Score=101.28 Aligned_cols=124 Identities=11% Similarity=-0.027 Sum_probs=112.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1747 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1747 ~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
+..|++|++..|.. |..++..+.+.|++++|...|.+++...|.+...|..++..+... ++++|...|++++...|.
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 57899999998875 667888999999999999999999999999999999999999999 999999999999999987
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
+ +.+|..+|..+...|++++|+..|++++...|.+...|........
T Consensus 91 ~--~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 H--PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred C--cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 7 5899999999999999999999999999999999999977666544
|
|
| >cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=93.05 Aligned_cols=68 Identities=38% Similarity=0.747 Sum_probs=63.5
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
|+++.|+|.++.++|+||+|.+ +..|++|++++++.++.++.+.|++||.|+++|+++|+ .+++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILP-GKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCC-CCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 7899999999999999999975 79999999999999888888899999999999999998 89999884
|
PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-06 Score=115.51 Aligned_cols=252 Identities=10% Similarity=0.007 Sum_probs=157.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
++...|...|++++..+|+++.++..++..+.+.++.++|++.+++++...|... ..+.++.+....+. ...
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~------~~l~layL~~~~~~--~~~ 187 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ------NYMTLSYLNRATDR--NYD 187 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH------HHHHHHHHHHhcch--HHH
Confidence 5567899999999999999999999888888999999999999999987655311 12333333323332 234
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHH--------------------------------------------------------
Q 000173 1746 VVKVFQRALQYCDPK-KVHLALLG-------------------------------------------------------- 1768 (1935)
Q Consensus 1746 a~~vferAl~~~~~~-~v~~~l~~-------------------------------------------------------- 1768 (1935)
|.+.|+++++..|.+ +++..+..
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 666677776665432 22111111
Q ss_pred --------------------------------------------------------------------HHHHcCChHHHH
Q 000173 1769 --------------------------------------------------------------------LYERTEQNKLAD 1780 (1935)
Q Consensus 1769 --------------------------------------------------------------------i~~~~~~~~~A~ 1780 (1935)
.|...++.++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 344555666666
Q ss_pred HHHHHHHHhcC----CCHHH--HHHHHHHHHHc-CHHHHHHHHHHHHHhCCC-------------CChHHHHHHHHHHHH
Q 000173 1781 ELLYKMIKKFK----HSCKV--WLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-------------HKHIKFISQTAILEF 1840 (1935)
Q Consensus 1781 el~~~~~k~~~----~~~~v--w~~~~~~l~~~-~~e~A~~ll~ralk~~p~-------------~~~~~~~~~~a~le~ 1840 (1935)
.+|.+++...+ ....+ ...+.-.++.+ ++++|+.+++++.+..|. ..........|+.+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 66666654321 11111 22333344455 777777777777764441 122355556677777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000173 1841 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1920 (1935)
Q Consensus 1841 ~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~ 1920 (1935)
-.|+..+|..+++.++...|.+..+|+.+++++...|.+.+|+.+++++.. +.|.... +-..........|+...++
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~-~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLI-LERAQAETAMALQEWHQME 504 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHH-HHHHHHHHHHhhhhHHHHH
Confidence 778888888888888888888888888888888888888888888877776 5665542 2222222233456777666
Q ss_pred HHHHHHHH
Q 000173 1921 YVKQKAME 1928 (1935)
Q Consensus 1921 ~v~~rAle 1928 (1935)
.+....++
T Consensus 505 ~~~~~l~~ 512 (822)
T PRK14574 505 LLTDDVIS 512 (822)
T ss_pred HHHHHHHh
Confidence 66655443
|
|
| >cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-08 Score=94.06 Aligned_cols=72 Identities=25% Similarity=0.423 Sum_probs=66.9
Q ss_pred CCEEEEEEEEEeeceEEEEeC---CCcEEEEECccCCCccc-CCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcc
Q 000173 1379 NMIVQGYVKNVTSKGCFIMLS---RKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452 (1935)
Q Consensus 1379 G~~v~G~V~~v~~~G~fV~l~---~~v~g~V~~s~lsd~~~-~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~ 1452 (1935)
|+++.|.|.++.++|+||+|+ ++.+|++|+++++|.+. .++.+.|++||.|+++|+++| ++++.+|+|....
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~~~ 76 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDVDQ 76 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEeccc
Confidence 789999999999999999998 46999999999999986 899999999999999999999 8999999998654
|
The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.3e-07 Score=104.60 Aligned_cols=188 Identities=11% Similarity=0.000 Sum_probs=146.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1760 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1760 (1935)
++.....|+..+..+++.++++.|...+++++...|... .....|..++..+...++ .+.|...|+++++..|..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~la~~~~~~~~--~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP--YAEQAQLDLAYAYYKSGD--YAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHCcCCC
Confidence 456788889999999999999999999999997666422 122467888888888884 599999999999988754
Q ss_pred ---HHHHHHHHHHHHc--------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChH
Q 000173 1761 ---KVHLALLGLYERT--------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1829 (1935)
Q Consensus 1761 ---~v~~~l~~i~~~~--------~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~ 1829 (1935)
..|+.++.+|.+. ++++.|.+.|++++..+|.+...|..+..... +...+ .
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~------~~~~~------------~ 166 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY------LRNRL------------A 166 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH------HHHHH------------H
Confidence 3577777777765 77899999999999999888777654433111 11110 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~---~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
......|.+++..|++++|...|++++..+|+. ..+|...+..+.+.|++++|..+|+.+..
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 223467888999999999999999999998875 46899999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-08 Score=95.88 Aligned_cols=71 Identities=38% Similarity=0.743 Sum_probs=62.4
Q ss_pred CCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEecCCCeeEE
Q 000173 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1935)
Q Consensus 1468 ~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~V~~~Il~id~~~~ri~l 1536 (1935)
+|+++.|+|+++.++|+||+|.+.+++|++|.+++++++.. .....|++||.|+++|+++|.++++|.|
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 48999999999999999999976469999999999876422 3457899999999999999999999999
Q ss_pred ec
Q 000173 1537 GM 1538 (1935)
Q Consensus 1537 sl 1538 (1935)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
|
RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-06 Score=102.63 Aligned_cols=258 Identities=14% Similarity=0.080 Sum_probs=180.8
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHcC-CCCHHHHHHHHHHH-HHcC-CHHHHHHHHHHHHHhccccchhhHHHHHHHH
Q 000173 1655 EIRAAEERLLEKDAPRTPDEFERLVRSS-PNSSFVWIKYMAFM-LSMA-DVEKARSIAERALQTINIREENEKLNIWVAY 1731 (1935)
Q Consensus 1655 ~~~~~e~~~~~~~~~~a~~~ferll~~~-P~s~~lW~~y~~~~-l~~~-e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ay 1731 (1935)
++...-+-+-+++...+++.+.-+-..+ ..-+.+-.++...+ ++-| ++..|...++.|+..-.++. .....-
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~-----~a~~nk 496 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA-----AALTNK 496 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH-----HHhhcC
Confidence 3444433333455555555444332222 12233333333333 4444 78888888888885433322 111222
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CH
Q 000173 1732 FNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQ 1809 (1935)
Q Consensus 1732 l~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~ 1809 (1935)
.|.....| +.++|.+.|++||....+ .+..+..+-.++..|+.++|.+.|-++-.+..++..+.+.++..|... +.
T Consensus 497 gn~~f~ng--d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 497 GNIAFANG--DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CceeeecC--cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 23333445 568999999999866544 366777777888899999999999888877778999999999988888 99
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1810 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1889 (1935)
Q Consensus 1810 e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfera 1889 (1935)
.+|.++|-.+....|.. +.++.++|.+|-+.|+-.+|-+.+=...+.+|.+......++.+++...=.+++.++||+|
T Consensus 575 aqaie~~~q~~slip~d--p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPND--PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhcccCCCC--HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999998888887 5889999999999999999988888888889998887555566666666678899999998
Q ss_pred HhcCCCchhHHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 000173 1890 ISLSLPPKKMKFLFKKYLEY-EKSVGEEERIEYVKQK 1925 (1935)
Q Consensus 1890 l~~~~~pk~~k~l~~~yl~~-E~~~G~~e~a~~v~~r 1925 (1935)
.- +.|...+ |..++.- ..+.|++.+|..+|..
T Consensus 653 al--iqp~~~k--wqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 653 AL--IQPNQSK--WQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred Hh--cCccHHH--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 77 6776663 7776653 5668888888777754
|
|
| >PLN00207 polyribonucleotide nucleotidyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-08 Score=133.31 Aligned_cols=79 Identities=32% Similarity=0.582 Sum_probs=72.5
Q ss_pred cCCCCCCcEEE-eEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1463 LSNLHVGDIVI-GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1463 ~~~~~~G~~v~-G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
+.+.++|+++. |+|++|.+||+||+|.+ +++||||+|+|+|+++.++.+.|++||.|+|+|+++|+ ++||.||+|..
T Consensus 748 ~~~~~vG~iy~~g~V~~I~~FGaFVeL~~-g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l 825 (891)
T PLN00207 748 TMVPTVGDIYRNCEIKSIAPYGAFVEIAP-GREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRAL 825 (891)
T ss_pred hcCcCCCcEEECcEEEEEeccEEEEEeCC-CCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEecc
Confidence 34678999995 69999999999999987 79999999999999999999999999999999999996 89999999986
Q ss_pred cc
Q 000173 1542 YF 1543 (1935)
Q Consensus 1542 ~~ 1543 (1935)
..
T Consensus 826 ~~ 827 (891)
T PLN00207 826 LP 827 (891)
T ss_pred cc
Confidence 43
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-06 Score=104.63 Aligned_cols=201 Identities=11% Similarity=0.020 Sum_probs=164.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1761 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1761 (1935)
|+...+|-.+.+.+...+..++|..+++++++..|. . ..+|.....+...++. ..+++...++++++.+|.. .
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~----ytaW~~R~~iL~~L~~-~l~eeL~~~~~~i~~npknyq 107 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPG-N----YTVWHFRRLCLEALDA-DLEEELDFAEDVAEDNPKNYQ 107 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-h----HHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHCCcchH
Confidence 344455555556666677899999999999976553 2 4689877777677773 2488999999999999875 9
Q ss_pred HHHHHHHHHHHcCCh--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQN--KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~--~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
+|....-++.+.++. +++.+.+.+++...+.+..+|...+-.+... ++++|.+.+.++|+..|.+. .+|...+.+
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~--sAW~~R~~v 185 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN--SAWNQRYFV 185 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch--hHHHHHHHH
Confidence 999998888888764 7889999999999999999999999888887 99999999999999999885 788888877
Q ss_pred HHHc---CC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 000173 1839 EFKN---GV----ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1839 e~~~---g~----~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~----g~~e~ar~lferal~ 1891 (1935)
.... |. .+++.....+++..+|.+..+|+.+.-++... +....|...+.+++.
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 7665 22 35778888899999999999999998888773 445668888999887
|
|
| >cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-08 Score=91.79 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=64.3
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
|+.+.|.|.++.++|+||++.++..||+|.+++++.+..++.+.|++||.|.|+|+++|+ ++++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILPGKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCCCCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 678999999999999999999999999999999998888888899999999999999999 99999884
|
PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo. |
| >PRK03987 translation initiation factor IF-2 subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-08 Score=116.06 Aligned_cols=76 Identities=33% Similarity=0.627 Sum_probs=71.3
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecC-ceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~-~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.++|++|.|+|+++.+||+||.|.+. ++.||+|+|++++.++.++.+.|++||.|.|+|+++|+++++|.||+|..
T Consensus 6 P~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~v 82 (262)
T PRK03987 6 PEEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKRV 82 (262)
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEec
Confidence 47899999999999999999999753 79999999999999999999999999999999999999999999999863
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-06 Score=96.74 Aligned_cols=222 Identities=16% Similarity=0.139 Sum_probs=177.5
Q ss_pred HcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHH
Q 000173 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-----KKVHLALLGLYER 1772 (1935)
Q Consensus 1698 ~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-----~~v~~~l~~i~~~ 1772 (1935)
-..+.|+|...|-..++. +.+.+..-+++.+|+..-|+ .+.|..+-+-.+.--+. .-....++.=|..
T Consensus 47 Ls~Q~dKAvdlF~e~l~~-----d~~t~e~~ltLGnLfRsRGE--vDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE-----DPETFEAHLTLGNLFRSRGE--VDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hhcCcchHHHHHHHHHhc-----CchhhHHHHHHHHHHHhcch--HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 345678999999888864 44556789999999999994 59999888777665443 1566778888999
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH---HHHHHHHHHHHHcCCHHHH
Q 000173 1773 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI---KFISQTAILEFKNGVADRG 1848 (1935)
Q Consensus 1773 ~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~---~~~~~~a~le~~~g~~e~A 1848 (1935)
+|-++.|.++|..+...-.........+...|... +.++|.+.-++..+..++...+ .+|-.+|+.+....+.++|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999865444566777888888888 9999999999999888775433 5667777777788899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1849 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1849 r~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
+.++.++++.+|++..+-...++++...|+++.|...++++++ -+|.-.-.+......-+...|..++......++++
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e--Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE--QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 34433334455555556667888887777777665
|
|
| >smart00316 S1 Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.3e-08 Score=91.01 Aligned_cols=72 Identities=32% Similarity=0.487 Sum_probs=68.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
++|+++.|+|.+++++|+||+++.++.|++|.+++++.+..++.+.|++||.+.++|++++++++++.+|++
T Consensus 1 ~~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 369999999999999999999999999999999999998888888999999999999999998899999985
|
|
| >smart00316 S1 Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-08 Score=91.48 Aligned_cols=71 Identities=37% Similarity=0.528 Sum_probs=67.1
Q ss_pred CCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
+|+.+.|.|.+++++|+||++.+++.||+|.+++.+.+..++...|++||.|.|+|++++++++++.||++
T Consensus 2 ~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 2 VGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 69999999999999999999998999999999999888778888899999999999999999999999974
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.9e-07 Score=112.72 Aligned_cols=224 Identities=15% Similarity=0.107 Sum_probs=176.6
Q ss_pred cCCCCcHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--ccchhhH-HHHHHHHHHH
Q 000173 1666 KDAPRTPDEFERLVRS--------SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN--IREENEK-LNIWVAYFNL 1734 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~--------~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~--~~ee~Ek-l~lW~ayl~l 1734 (1935)
++...|...|++++.. .|.-...-..++.+|+.++++++|..+|++|+...- +.++-+. ..+...+..+
T Consensus 213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~l 292 (508)
T KOG1840|consen 213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVL 292 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4577888888888876 677677777899999999999999999999996211 1111111 2556666667
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCC------H---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC--------CCHHHH
Q 000173 1735 ENEYGNPPEEAVVKVFQRALQYCDP------K---KVHLALLGLYERTEQNKLADELLYKMIKKFK--------HSCKVW 1797 (1935)
Q Consensus 1735 e~~~g~~~~e~a~~vferAl~~~~~------~---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~--------~~~~vw 1797 (1935)
+...|.+ ++|+..++||+.+... . ..+..++.++...+++++|..+|+++++++. .-..++
T Consensus 293 y~~~GKf--~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 293 YYKQGKF--AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HhccCCh--HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 7788854 9999999999976532 1 6666777788999999999999999998863 347788
Q ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHhCCCC---Ch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCH
Q 000173 1798 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRH---KH---IKFISQTAILEFKNGVADRGRSMFEGILSE-------YPKRT 1863 (1935)
Q Consensus 1798 ~~~~~~l~~~-~~e~A~~ll~ralk~~p~~---~~---~~~~~~~a~le~~~g~~e~Ar~ife~al~~-------~Pk~~ 1863 (1935)
.+++..++.+ ++++|+++|+.|++..... .+ -..+-.+|..+.+.+.+.+|-.+|+++... +|.-.
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 9999999999 9999999999999976221 11 245667777788999999999999998765 34455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1864 DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1864 dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..+..++-.|.+.|+++.|..+.++++.
T Consensus 451 ~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 451 YTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 6789999999999999999999999985
|
|
| >COG2183 Tex Transcriptional accessory protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-08 Score=127.39 Aligned_cols=86 Identities=31% Similarity=0.597 Sum_probs=80.8
Q ss_pred cchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000173 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447 (1935)
Q Consensus 1368 ~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSl 1447 (1935)
.....+++|++|+++.|.|.+|.++|+||+||-+.+|+||++.+|+.|+.+|.+.+++||.|+++|+++|...+||.||+
T Consensus 648 ~~v~~i~dLk~Gm~leg~Vrnv~~fgafVdIgv~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Lsm 727 (780)
T COG2183 648 EGVESITDLKPGMILEGTVRNVVDFGAFVDIGVHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALSM 727 (780)
T ss_pred hhhhhHhhccCCCEEEEEEEEeeeccceEEeccccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeEe
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccc
Q 000173 1448 KTSDSR 1453 (1935)
Q Consensus 1448 k~~~~~ 1453 (1935)
+.....
T Consensus 728 r~~~~~ 733 (780)
T COG2183 728 RLDEEE 733 (780)
T ss_pred eccCCc
Confidence 986653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.3e-07 Score=114.48 Aligned_cols=213 Identities=14% Similarity=0.107 Sum_probs=116.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1769 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i 1769 (1935)
..|+..+++.|=...|..+|+|. ..|-..+.++...| ...+|..+..+-++..|....|-.++++
T Consensus 402 ~~laell~slGitksAl~I~Erl-------------emw~~vi~CY~~lg--~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL-------------EMWDPVILCYLLLG--QHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH-------------HHHHHHHHHHHHhc--ccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 34555566666666666665543 35776666666666 4466666666666633333555555655
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000173 1770 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1848 (1935)
Q Consensus 1770 ~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~A 1848 (1935)
..+..-|++|.++++.... .+...++...+.+ +++++.+.|++++..+|-. +..|+.++.+..+.++...|
T Consensus 467 ~~d~s~yEkawElsn~~sa------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISA------RAQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhH------HHHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHhhhHHH
Confidence 5444444444444433221 1223333333344 5555555666665555554 35555555555555555566
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1849 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1849 r~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
...|.+++...|.+...|+++.-.+++.++..+|+..+.+|+. ++-.+. .+|..|+-.-.+-|..+.|...|.|-++
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK--cn~~~w-~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK--CNYQHW-QIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh--cCCCCC-eeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6666666655666555566666666665555566666666555 222333 3555555555555555555555555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.3e-07 Score=118.55 Aligned_cols=136 Identities=12% Similarity=0.123 Sum_probs=128.8
Q ss_pred hcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHH
Q 000173 1755 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1833 (1935)
Q Consensus 1755 ~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~ 1833 (1935)
.|...-..+..++.+..+.|.+++|..++++++...|++...|..++..+.+. ++++|...+++++...|.+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~--~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS--AREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC--HHHHH
Confidence 34444588999999999999999999999999999999999999999999999 9999999999999999988 58999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1834 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1834 ~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
.+|.++.+.|++++|..+|++++..+|...++|..|+..+...|+.+.|...|++|+..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999983
|
|
| >cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.6e-08 Score=94.94 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=65.0
Q ss_pred CCCCCcEEEeEEEEEeec--eEEEEEecCceeEEeeccccCc---ccccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1465 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSE---DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~--G~FV~l~~~~v~Gl~h~sels~---~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
.+++|+++.|+|+++.+| |+||+|.+ +.+||+|+||++| .++.++.+.|++||.|.|+|++.....+...|+.+
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~-g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~ 82 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGL-GKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTN 82 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCC-CCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEE
Confidence 578999999999999997 99999986 7999999999998 66778889999999999999998766666666554
|
RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.8e-07 Score=101.95 Aligned_cols=116 Identities=11% Similarity=0.079 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHc-C--HHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL-LKQ-Q--QEGVQAVVQR 1818 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l-~~~-~--~e~A~~ll~r 1818 (1935)
+.+...++++++.+|.+ ..|..++.+|...+++++|.+.|+++++..|++..+|..|+..+ ... + .++|+++|++
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 44444455555554443 45555555555555555555555555555555555555555433 222 2 3455555555
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
+++..|.+ +.++..+|..++..|++++|...|+++++..|.
T Consensus 136 al~~dP~~--~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 136 ALALDANE--VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHhCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 55554444 344455555555555555555555555544444
|
|
| >PHA02945 interferon resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.1e-08 Score=89.49 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=66.9
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCC--CcEEEEECccC--CCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~--~v~g~V~~s~l--sd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
.+|+++-|+|+. .++|+||.|.. +++|++|+++. +..|+++ ++.+ +||.+.|+|+++|+..+.|.||||...
T Consensus 10 ~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V~ 85 (88)
T PHA02945 10 NVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_pred CCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEcc
Confidence 589999999999 99999999964 79999999965 9999999 9999 999999999999999999999999754
|
|
| >cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.3e-08 Score=91.48 Aligned_cols=67 Identities=30% Similarity=0.585 Sum_probs=60.9
Q ss_pred ccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1462 ~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
.+.++++|+++.|+|+++++||+||.+.+ ++.||+|.|++. ..|+.||.++++|.++ .++++|.|++
T Consensus 10 ~~~~~~~G~~~~g~V~~i~~~G~fV~l~~-~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 10 TMEDLEVGKLYKGKVNGVAKYGVFVDLND-HVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred chhhCCCCCEEEEEEEeEecceEEEEECC-CcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 46789999999999999999999999987 699999999863 4599999999999999 7999999875
|
The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-06 Score=101.73 Aligned_cols=165 Identities=11% Similarity=0.047 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC---KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1835 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~---~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~-~~~~~~ 1835 (1935)
..++.++..+...++++.|...|+++++.+|.++ ..|+.++..++.. ++++|...|++++...|.+.+. ..|...
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 6778888888888888888888888888887654 5778888888888 8888888888888888876432 356777
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHH-----------------HHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1836 AILEFKN--------GVADRGRSMFEGILSEYPKRTDLWS-----------------IYLDQEIRLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1836 a~le~~~--------g~~e~Ar~ife~al~~~Pk~~dlw~-----------------~ya~~e~k~g~~e~ar~lferal 1890 (1935)
+..++.. |+++.|...|++++..+|++...|. ..++++++.|+++.|...|++++
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7777655 6788888888888888888765442 34677888999999999999999
Q ss_pred hcCC-CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1891 SLSL-PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1891 ~~~~-~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rA 1926 (1935)
.... .|... ..|........+.|+.+++...++..
T Consensus 194 ~~~p~~~~~~-~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 194 ENYPDTPATE-EALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHCCCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8211 12233 56777788888899999988877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.5e-07 Score=117.84 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH---HHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKM---IKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~---~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
.++.++-.+..+++....+.+.+-++ ...|++..+.++.++....+. .+++|..+++++++..|.+ ..++..||
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--~~a~~~~a 127 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--SEAFILML 127 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--HHHHHHHH
Confidence 33344445555666555555555444 467889999999999999999 9999999999999999988 59999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1916 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~ 1916 (1935)
..+.+.+.+|+|+..+++++...|++....+.++..+.+.|.+++|..+|++++. ..|... ..|..|....++.|+.
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~-~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--QHPEFE-NGYVGWAQSLTRRGAL 204 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcH-HHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999998 555655 5899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000173 1917 ERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1917 e~a~~v~~rAle~v 1930 (1935)
++|...|++|++..
T Consensus 205 ~~A~~~~~~a~~~~ 218 (694)
T PRK15179 205 WRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-06 Score=94.40 Aligned_cols=183 Identities=14% Similarity=0.148 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhcCCCH----HHHHHH---HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK----KVHLAL---LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAV 1815 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~----~v~~~l---~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~l 1815 (1935)
++..+++...+.+.... +.|.-| +-.....++.+.|..+++++..+||.+..+-..+|.++... ++++|.++
T Consensus 29 eevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~ 108 (289)
T KOG3060|consen 29 EEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEY 108 (289)
T ss_pred HHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHH
Confidence 44555555444443321 333333 33344567778888888888888888888877777777777 88888888
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000173 1816 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1895 (1935)
Q Consensus 1816 l~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~ 1895 (1935)
|++.+.-.|.+. .++.+-..+...+|..-.|..-+-..+..+|.+.++|..++.+++..|++++|--.+|.++- ..
T Consensus 109 y~~lL~ddpt~~--v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~ 184 (289)
T KOG3060|consen 109 YESLLEDDPTDT--VIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQ 184 (289)
T ss_pred HHHHhccCcchh--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cC
Confidence 888888777764 44555555566677777777777788888888888888888888888888888888888776 55
Q ss_pred chhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Q 000173 1896 PKKMKFLFKKYLEYEKSVG---EEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1896 pk~~k~l~~~yl~~E~~~G---~~e~a~~v~~rAle~v~ 1931 (1935)
|.+. .+|.+|.+.....| +.+.++..|+||++.-.
T Consensus 185 P~n~-l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 185 PFNP-LYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred CCcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 6555 57788877655555 45567777887776543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-06 Score=108.17 Aligned_cols=187 Identities=11% Similarity=-0.031 Sum_probs=102.0
Q ss_pred CCCCcHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHH---HHHHHHHHcCC
Q 000173 1667 DAPRTPDEFERLVRSSPNS---SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV---AYFNLENEYGN 1740 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s---~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~---ayl~le~~~g~ 1740 (1935)
+.+.+...|.+.....|.+ ...+.-.+..+...+++++|...+++++...|... ..|. .+..+....+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-----~a~~~~~~~~~~~~~~~- 94 (355)
T cd05804 21 ERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-----LALKLHLGAFGLGDFSG- 94 (355)
T ss_pred CcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----HHHHHhHHHHHhccccc-
Confidence 3444456666666555432 34444445555666677777777777766544321 2232 1222212223
Q ss_pred CCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1741 PPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1741 ~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
....+.+.++.+....+.. ..+..++.++...|++++|.+.|++++...|.+...|..++..+.+. ++++|...|++
T Consensus 95 -~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 95 -MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred -CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 1233333333321222222 33334555666677777777777777766666666666666666666 77777777777
Q ss_pred HHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000173 1819 ALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1860 (1935)
Q Consensus 1819 alk~~p~~~--~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~P 1860 (1935)
++...|... ....|..+|.++...|++++|..+|++++...|
T Consensus 174 ~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 174 WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 766655321 123455666666677777777777777655444
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.1e-08 Score=89.35 Aligned_cols=68 Identities=29% Similarity=0.475 Sum_probs=64.4
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lS 1446 (1935)
+|+++.|.|.++.++|+||+++ +++|++|.+++++.+..++.+.|++||.|+++|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG-GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC-CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 4899999999999999999998 7999999999999998899999999999999999999999999875
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >COG2183 Tex Transcriptional accessory protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-08 Score=126.33 Aligned_cols=79 Identities=33% Similarity=0.653 Sum_probs=75.1
Q ss_pred ccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1462 ~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.+.+|++|+++.|+|+++.+||+||.|+ -..+||+|+|++++.++.++.+.+++||.|+++|+++|..++||.|||+..
T Consensus 652 ~i~dLk~Gm~leg~Vrnv~~fgafVdIg-v~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Lsmr~~ 730 (780)
T COG2183 652 SITDLKPGMILEGTVRNVVDFGAFVDIG-VHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALSMRLD 730 (780)
T ss_pred hHhhccCCCEEEEEEEEeeeccceEEec-cccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeEeecc
Confidence 4679999999999999999999999996 488999999999999999999999999999999999999999999999874
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-07 Score=102.94 Aligned_cols=118 Identities=12% Similarity=0.152 Sum_probs=110.6
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH-HHcCC--HHHH
Q 000173 1773 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE-FKNGV--ADRG 1848 (1935)
Q Consensus 1773 ~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le-~~~g~--~e~A 1848 (1935)
.++.+++...|+++++..|++...|+.++..++.. +++.|...|++|++..|.+ ..+|..+|..+ +..|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~--~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN--AELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCCcHHH
Confidence 56678899999999999999999999999999999 9999999999999999987 59999999964 67787 5999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1849 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1849 r~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
+.+|+++++.+|++...|+.++..++..|++++|...|++++..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999983
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.4e-06 Score=97.86 Aligned_cols=223 Identities=16% Similarity=0.130 Sum_probs=178.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------------------------------HHHHHHHHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD----------------------------------VEKARSIAE 1710 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e----------------------------------~dkAr~v~e 1710 (1935)
.++..+++..|++....+|+....--.|+-..-+.|+ +..|....+
T Consensus 245 ~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 245 NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 4566677777777777777666555555555444444 444555555
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 000173 1711 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKK 1789 (1935)
Q Consensus 1711 rAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~ 1789 (1935)
++++.-+ +. ...++.-.++..+.+ ..++|.-.|+.|....|.. ..|.-+...|...+++.+|.-+-..+.+.
T Consensus 325 K~I~~~~-r~----~~alilKG~lL~~~~--R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 325 KCIDSEP-RN----HEALILKGRLLIALE--RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred HHhccCc-cc----chHHHhccHHHHhcc--chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 5553322 11 235566667778888 4489999999999999886 99999999999999999999999999999
Q ss_pred cCCCHHHHHHHH-HHHHHc--CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000173 1790 FKHSCKVWLRRV-QRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1790 ~~~~~~vw~~~~-~~l~~~--~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw 1866 (1935)
++++......++ ..++.. --++|..+|+++|+..|.. +.+....|.++...|..+.+..++|+.|..+|+. .+.
T Consensus 398 ~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH 474 (564)
T KOG1174|consen 398 FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLH 474 (564)
T ss_pred hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc--HHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHH
Confidence 999999888885 555555 7899999999999999988 6899999999999999999999999999999985 688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1867 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1867 ~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
..++|+......+.+|...|..|+. ..|+.-
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 8899999999999999999999999 666554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-07 Score=115.07 Aligned_cols=199 Identities=13% Similarity=0.167 Sum_probs=168.0
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
.-.|...|||+ .+|-..+.+|...|...+|.++..|-++.-|. ..+|..++.+-.. -
T Consensus 414 tksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d------~~lyc~LGDv~~d---------~ 470 (777)
T KOG1128|consen 414 TKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD------PRLYCLLGDVLHD---------P 470 (777)
T ss_pred HHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc------chhHHHhhhhccC---------h
Confidence 33455566665 78999999999999999999999988873331 2356666555222 3
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1748 KVFQRALQYCDPK--KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1748 ~vferAl~~~~~~--~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
..|++|.++.+.. .....++....+.++|++|...|++.++.++-....|+.++...++. +++.|.+.|.+++...|
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 4566776665543 44455666666789999999999999999999999999999999999 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.+. ..|.+++..+.+.++-.+|+..+..+++.+-++..+|.+|+....+-|.++.|...|.|.+.
T Consensus 551 d~~--eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 551 DNA--EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred Cch--hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 884 99999999999999999999999999999988899999999999999999999999999987
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-06 Score=114.99 Aligned_cols=199 Identities=10% Similarity=0.002 Sum_probs=162.2
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-
Q 000173 1680 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD- 1758 (1935)
Q Consensus 1680 ~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~- 1758 (1935)
...|+....-...+-...+.|+++.|+..++++++..|-.. ..++ .++.+....|+ .++|...+++|+.-.+
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~----~av~-dll~l~~~~G~--~~~A~~~~eka~~p~n~ 100 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS----GQVD-DWLQIAGWAGR--DQEVIDVYERYQSSMNI 100 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch----hhHH-HHHHHHHHcCC--cHHHHHHHHHhccCCCC
Confidence 34677777666666677899999999999999997666321 0123 67777777794 5999999999993222
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000173 1759 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1837 (1935)
Q Consensus 1759 ~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~ 1837 (1935)
+......++.+|...+++++|.++|+++++..|+++.++..++..+... +.++|.+.++++.+..|... .+...+.
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~---~~l~lay 177 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ---NYMTLSY 177 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH---HHHHHHH
Confidence 2356666688999999999999999999999999999999888888888 99999999999999998753 3355566
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1838 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1838 le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
++...++..+|...|++++..+|.+.+++..|...+.+.|-...|..+..+
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 666677777799999999999999999999999999999988888776664
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.7e-06 Score=93.25 Aligned_cols=263 Identities=15% Similarity=0.096 Sum_probs=196.8
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc----hhhHH----HHHHHHHHHHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE----ENEKL----NIWVAYFNLENE 1737 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e----e~Ekl----~lW~ayl~le~~ 1737 (1935)
++.--+..+++|.|...|+...+-++-+..++.+|+++.|..-|...|+.-|..+ -++++ .-|...-.+-..
T Consensus 86 Gksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~ 165 (504)
T KOG0624|consen 86 GKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA 165 (504)
T ss_pred cCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4466677899999999999999999999999999999999999999998766432 22333 345444444344
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHH
Q 000173 1738 YGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAV 1815 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~l 1815 (1935)
++.-+-..|.+.....|+..|+. .+|...+.+|..-+....|..-+..+.+.-.++...++.....++.. +.+.+...
T Consensus 166 ~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred hcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 43224588999999999999997 89999999999999999999999999998899999999999999998 99999999
Q ss_pred HHHHHHhCCCCChH-HHHHHHH---------HHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHH
Q 000173 1816 VQRALLSLPRHKHI-KFISQTA---------ILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIRLGDVDL 1881 (1935)
Q Consensus 1816 l~ralk~~p~~~~~-~~~~~~a---------~le~~~g~~e~Ar~ife~al~~~Pk~~d----lw~~ya~~e~k~g~~e~ 1881 (1935)
...+|+.+|.++.+ ..|..+- .-....+++..+..-.|+.++..|.-+. ........+...+++-+
T Consensus 246 iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 246 IRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 99999999998643 1222111 1122567788888889999999888433 34444455556788888
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1882 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1882 ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
|.....+++. +.|..+. .+..-.+-..-.-.++.|..-|++|+++=+
T Consensus 326 AiqqC~evL~--~d~~dv~-~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 326 AIQQCKEVLD--IDPDDVQ-VLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHh--cCchHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 9988999888 7777663 333222222222346677777777776543
|
|
| >cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.3e-08 Score=93.46 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=67.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCC----cccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD----GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd----~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
.++|++|.|.|+++.++|+||.++.+.+|++|++++++ .+..+..+.|++||.+.|+|++++++ +++.||++...
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~~ 82 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSLK 82 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCccc
Confidence 46899999999999999999999999999999999996 45567778899999999999999875 99999998743
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >PLN00207 polyribonucleotide nucleotidyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.5e-08 Score=127.12 Aligned_cols=82 Identities=16% Similarity=0.313 Sum_probs=77.0
Q ss_pred cCCCCCEEE-EEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1375 DLSPNMIVQ-GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1375 ~lk~G~~v~-G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
+.++|+++. |.|++|.++|+||+|.++++|+||+++|+|.++.++.+.|++||.|+++|+++|+ .+||.||+|....+
T Consensus 750 ~~~vG~iy~~g~V~~I~~FGaFVeL~~g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l~~~ 828 (891)
T PLN00207 750 VPTVGDIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRALLPE 828 (891)
T ss_pred CcCCCcEEECcEEEEEeccEEEEEeCCCCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEeccccC
Confidence 468999996 6999999999999999999999999999999999999999999999999999997 89999999999988
Q ss_pred cccc
Q 000173 1454 TASQ 1457 (1935)
Q Consensus 1454 ~~~~ 1457 (1935)
||..
T Consensus 829 Pw~~ 832 (891)
T PLN00207 829 ANSE 832 (891)
T ss_pred chhh
Confidence 8853
|
|
| >PRK09521 exosome complex RNA-binding protein Csl4; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-07 Score=104.13 Aligned_cols=103 Identities=20% Similarity=0.390 Sum_probs=81.6
Q ss_pred cEEEEEE---EEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEec---------Ccee
Q 000173 1427 KLVAGRV---LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLV 1494 (1935)
Q Consensus 1427 ~~V~~kV---l~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~---------~~v~ 1494 (1935)
..+.+.+ +++|.++++|.+. ||.. ....+++|++|.|+|+++.++|+||+|.. .++.
T Consensus 31 ~~i~as~~G~~~id~~~~~Isv~-------P~~~----~~~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~ 99 (189)
T PRK09521 31 GEVYASVVGKVFIDDINRKISVI-------PFKK----TPPLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKL 99 (189)
T ss_pred CEEEEEeeEEEEEcCCCCEEEEe-------cCcC----CCCCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCce
Confidence 3444444 3456667777662 3321 13467899999999999999999999952 2588
Q ss_pred EEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1495 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1495 Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
|++|++++++....++.+.|++||.|.|+|++++ +++.||+|...+
T Consensus 100 G~l~~s~i~~~~~~~~~~~~~~GD~V~akV~~i~---~~i~LS~k~~~l 145 (189)
T PRK09521 100 AYIHISQVSDGYVESLTDAFKIGDIVRAKVISYT---DPLQLSTKGKDL 145 (189)
T ss_pred eeEEhhHcChhhhhhHHhccCCCCEEEEEEEecC---CcEEEEEecCCc
Confidence 9999999999988889999999999999999998 789999987543
|
|
| >cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=91.20 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=69.3
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
.++|++|.|+|.++.+.|++|.+.. ..+|++|.++++....+++.+.|++||.+.|+|+++|.+ +++.||++...+
T Consensus 4 p~~GdiV~G~V~~v~~~~~~V~i~~-~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~~~ 79 (82)
T cd04454 4 PDVGDIVIGIVTEVNSRFWKVDILS-RGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADNEL 79 (82)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEeCC-CceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCCCC
Confidence 4789999999999999999999964 899999999999888888899999999999999999976 999999987443
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9e-06 Score=102.56 Aligned_cols=250 Identities=16% Similarity=0.117 Sum_probs=186.2
Q ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000173 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1750 (1935)
Q Consensus 1671 a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vf 1750 (1935)
+...+|+++..+|+|+.+-..++-.|..+.+++.|.....++++..+.. ....|.-++-+...++ ....|..+.
T Consensus 463 slqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~----~~~~whLLALvlSa~k--r~~~Al~vv 536 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGD----SAKAWHLLALVLSAQK--RLKEALDVV 536 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHhhhh--hhHHHHHHH
Confidence 4556788999999999888888888889999999999999999754432 2567888877777777 447788888
Q ss_pred HHHHhcCCCH----------------------------HHHHHHHH----------------HHHHcCChHHHHHHHHHH
Q 000173 1751 QRALQYCDPK----------------------------KVHLALLG----------------LYERTEQNKLADELLYKM 1786 (1935)
Q Consensus 1751 erAl~~~~~~----------------------------~v~~~l~~----------------i~~~~~~~~~A~el~~~~ 1786 (1935)
.-|+...+.+ .+|.+.-. +-....+..+|...+..+
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 8888665441 11221000 000111233333333332
Q ss_pred HHhc-------------C-------------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1787 IKKF-------------K-------------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1787 ~k~~-------------~-------------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
.+.- | ....+|+..+..+... +.++|+..+..|-+.+|.. ...|...|..+
T Consensus 617 s~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~~ 694 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLLL 694 (799)
T ss_pred HHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHHH
Confidence 2110 0 0146788888888888 8899999999998888777 48889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG--LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~--lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e 1917 (1935)
...|..++|...|..++..+|.+.......+.++.+.|+..-|.. ++..|+. +.|.+. ..|.......++.|+.+
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~-eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNH-EAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCH-HHHHHHHHHHHHccchH
Confidence 999999999999999999999999999999999999887655544 8888888 777777 58988888889999999
Q ss_pred HHHHHHHHHHHHHH
Q 000173 1918 RIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1918 ~a~~v~~rAle~v~ 1931 (1935)
.|-.+|+-|++.-.
T Consensus 772 ~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 772 QAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999887644
|
|
| >cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=88.23 Aligned_cols=63 Identities=27% Similarity=0.468 Sum_probs=57.6
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccc--ccCcccccCCCCEEEEEEEEEecCCC
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKR 1532 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~--~~~~~~~~~~Gd~V~~~Il~id~~~~ 1532 (1935)
|++|.|+|+++.++|+||+|.+ +++|++|++++++.+ ..++.+.|++||.|+|+|+++|.++.
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~-~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~~ 65 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLAD-NVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAKT 65 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCC-CcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCccc
Confidence 7899999999999999999976 899999999999884 77888999999999999999996543
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.7e-06 Score=104.27 Aligned_cols=217 Identities=18% Similarity=0.181 Sum_probs=145.6
Q ss_pred HcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCC-----CCHHHHHHHHH
Q 000173 1680 RSSPNSSFVWIKYMAFML---SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-----PPEEAVVKVFQ 1751 (1935)
Q Consensus 1680 ~~~P~s~~lW~~y~~~~l---~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~-----~~~e~a~~vfe 1751 (1935)
..-|.++.+|+.|+.-.. +..+...+...|++|+..-+ ..++|..|+++...+++ ...+..+.+|+
T Consensus 141 ~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~------~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ 214 (881)
T KOG0128|consen 141 EIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN------SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFE 214 (881)
T ss_pred HhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc------cchHHHHHHHHHHhccccccccccchhhhHHHH
Confidence 446999999999988765 44578888999999995333 37899999999877664 13578899999
Q ss_pred HHHhcCCC-----HHHHHHHHH---HHHHcCChHHHHHHHHHHHHhcC-CCHHHH--HHHH--HHHHHc--CHHH-----
Q 000173 1752 RALQYCDP-----KKVHLALLG---LYERTEQNKLADELLYKMIKKFK-HSCKVW--LRRV--QRLLKQ--QQEG----- 1811 (1935)
Q Consensus 1752 rAl~~~~~-----~~v~~~l~~---i~~~~~~~~~A~el~~~~~k~~~-~~~~vw--~~~~--~~l~~~--~~e~----- 1811 (1935)
||+..... ..+|..|.. .|..+...+....+|.+.++..- .....| .... ..+... +++.
T Consensus 215 ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l 294 (881)
T KOG0128|consen 215 RALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNL 294 (881)
T ss_pred HHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHH
Confidence 99987654 255555544 56556656667777777665431 111111 1111 111111 3333
Q ss_pred --HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 000173 1812 --VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI-RLGDVDLIRGLFER 1888 (1935)
Q Consensus 1812 --A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~-k~g~~e~ar~lfer 1888 (1935)
.+..|++.++..|.. ...|+.|..+++..|++-+-..++++++..++.+.++|..|..+.- .++-.+++-..+-|
T Consensus 295 ~~~~~~~e~~~q~~~~~--~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~r 372 (881)
T KOG0128|consen 295 AKILFKFERLVQKEPIK--DQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPR 372 (881)
T ss_pred HHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccch
Confidence 334566677777665 3899999999999999999999999999999999999988876543 34444555555666
Q ss_pred HHhcCCCchhHHHHHHHHH
Q 000173 1889 AISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1889 al~~~~~pk~~k~l~~~yl 1907 (1935)
++. .+|-.. .+|.+|+
T Consensus 373 a~R--~cp~tg-dL~~ral 388 (881)
T KOG0128|consen 373 AVR--SCPWTG-DLWKRAL 388 (881)
T ss_pred hhc--CCchHH-HHHHHHH
Confidence 655 333333 4566655
|
|
| >COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.8e-08 Score=120.82 Aligned_cols=104 Identities=25% Similarity=0.545 Sum_probs=85.5
Q ss_pred EEEeCCCCEEEEEEecCccccccccc-ccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCccc
Q 000173 1434 LSVEPLSKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1512 (1935)
Q Consensus 1434 l~vd~~~~ri~lSlk~~~~~~~~~~~-~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~ 1512 (1935)
+.++ +++.|.++-............ .....++++|+++.|+|+++.+||+||.|.+ +-+||||+|++++.++....+
T Consensus 585 Idie-ddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~l~~-gkdgl~hiS~~~~~rv~kv~d 662 (692)
T COG1185 585 IDIE-DDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLP-GKDGLVHISQLAKERVEKVED 662 (692)
T ss_pred EEec-CCCcEEEEecchHHHHHHHHHHHHHHhhcccccEEEEEEEEEeecceEEEecC-CcceeEEehhhhhhhhhcccc
Confidence 4555 678888777654322111111 1125789999999999999999999999987 889999999999999999999
Q ss_pred ccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1513 IYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1513 ~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
.+++||.|.++++.+| +++|+.||+|.
T Consensus 663 vlk~Gd~v~Vkv~~iD-~~Gri~ls~~~ 689 (692)
T COG1185 663 VLKEGDEVKVKVIEID-KQGRIRLSIKA 689 (692)
T ss_pred eeecCceEEEEEeeec-ccCCccceehh
Confidence 9999999999999999 78999999986
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=92.59 Aligned_cols=117 Identities=10% Similarity=-0.029 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
+.|++++...|.. ...+.++..+.+.+++++|.++|++++...|.+..+|..++.++... ++++|...|+++++..|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3577777777765 66777777777888888888888888877777888888888888777 888888888888877766
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw 1866 (1935)
. ..+|...|.++...|++++|...|+++++..|.+...+
T Consensus 84 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D--PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 5 47777788888888888888888888888887776643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-05 Score=98.60 Aligned_cols=204 Identities=13% Similarity=0.042 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1760 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1760 (1935)
+|++...|...+.++...++.+.|...+.++.+..+.+- .....+..........| +.+.|...++++++..|..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA--TERERAHVEALSAWIAG--DLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcH
Confidence 466666666666666666666666666666555444221 11112333333444455 3366666666666666554
Q ss_pred HHHH---HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1761 KVHL---ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1761 ~v~~---~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
..|. .+.......+....+.+.+.......+.....+..++..+..+ ++++|...|++++...|.+ ..++..+|
T Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~--~~~~~~la 155 (355)
T cd05804 78 LALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD--AWAVHAVA 155 (355)
T ss_pred HHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--cHHHHHHH
Confidence 2322 1222222233444444444332223333444444455555555 6666666666666666655 24556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~----~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.+++..|++++|...|++++...|.. .+.|..++.++...|++++|..+|++++.
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 66666666666666666666655432 23455566666666666666666666653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-05 Score=89.32 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=152.4
Q ss_pred CCCcHHHHHHHHHcCCC---CHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCC
Q 000173 1668 APRTPDEFERLVRSSPN---SSFVWIKYMAFM---LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1741 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~---s~~lW~~y~~~~---l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~ 1741 (1935)
..+-...+...+...+. ..+.|.-|=+.. +..++.+-|..++.+....+|.+. .+-.-++.+....|.+
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-----RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK-----RVGKLKAMLLEATGNY 102 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-----hHHHHHHHHHHHhhch
Confidence 44444555555544433 356776665443 577899999999999888887544 3444455555666744
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHH
Q 000173 1742 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1819 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ra 1819 (1935)
+.|.++|++.++-+|.+ -+|.+-+.+....|+.-+|.+.+..-+++|....++|..++..|+.. ++++|.-.|+.+
T Consensus 103 --~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 --KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred --hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88999999999999886 77777888888899999999999999999999999999999999999 999999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 000173 1820 LLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKRTDLWSI 1868 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~~~g---~~e~Ar~ife~al~~~Pk~~dlw~~ 1868 (1935)
+-..|.. +-.+..+|.++|..| +.+-||++|++++..+|++...|+-
T Consensus 181 ll~~P~n--~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 181 LLIQPFN--PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 9998877 478889999988777 6778999999999999988877764
|
|
| >cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-07 Score=87.24 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=58.3
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc--cCCccccCCCCcEEEEEEEEEeCCC
Q 000173 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLS 1440 (1935)
Q Consensus 1379 G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~--~~~~~~~f~~G~~V~~kVl~vd~~~ 1440 (1935)
|++|.|.|+++.++|+||.|+.+++|++|+++++++| ..+|.+.|++||.|.|+|+++|.++
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~ 64 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAK 64 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCCCcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCcc
Confidence 7899999999999999999999999999999999986 7889999999999999999999644
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=90.27 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=65.9
Q ss_pred cCCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEECccCCC---cccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1375 DLSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSD---GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1375 ~lk~G~~v~G~V~~v~~~--G~fV~l~~~v~g~V~~s~lsd---~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
.+++|+++.|+|+++.++ |+||+|+++.+|++|+++++| ..+.++.+.|++||.|.++|+......+...||.+-
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~~ 83 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGLGKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTNI 83 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCCCCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEEE
Confidence 467999999999999996 999999999999999999999 567788899999999999999987766666666543
|
RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th |
| >cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.9e-07 Score=86.54 Aligned_cols=67 Identities=25% Similarity=0.442 Sum_probs=61.3
Q ss_pred cccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 755 ~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
.+++++.|+.+.|.|++++++|+||++.+++.||+|.+++. ..|++||.++++|.++ .+++|+.||+
T Consensus 10 ~~~~~~~G~~~~g~V~~i~~~G~fV~l~~~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 10 TMEDLEVGKLYKGKVNGVAKYGVFVDLNDHVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred chhhCCCCCEEEEEEEeEecceEEEEECCCcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 45678899999999999999999999999999999999863 4599999999999999 8899999885
|
The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair. |
| >cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-07 Score=88.61 Aligned_cols=70 Identities=30% Similarity=0.448 Sum_probs=62.3
Q ss_pred CCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccC-----------CccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~-~v~g~V~~s~lsd~~~~-----------~~~~~f~~G~~V~~kVl~vd~~~~ri~l 1445 (1935)
+|+++.|+|++++++|+||+|++ +++|++|++++++.+.. .+...|++||.|+++|+++|.+.+++.+
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 38999999999999999999998 79999999999976421 3457899999999999999998999999
Q ss_pred EE
Q 000173 1446 TL 1447 (1935)
Q Consensus 1446 Sl 1447 (1935)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
|
RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA. |
| >cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-07 Score=88.82 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=69.5
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
++|++|.|+|+++.++|++|+++...+|++|+++++..+..++.+.|++||.+.|+|++++.+ +++.||++...
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~~ 78 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADNE 78 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCCC
Confidence 689999999999999999999999999999999999988888999999999999999999976 99999998743
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-05 Score=91.27 Aligned_cols=217 Identities=12% Similarity=0.057 Sum_probs=178.0
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
.....|-..|..++..+|++..+..+-+..|+..|.-..|..-+.|.|+.-| ++ .-.-++...+.+..| ..++
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp---DF--~~ARiQRg~vllK~G--ele~ 124 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP---DF--MAARIQRGVVLLKQG--ELEQ 124 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc---cH--HHHHHHhchhhhhcc--cHHH
Confidence 3466778899999999999999999999999999999999999999997654 21 245677788889999 5699
Q ss_pred HHHHHHHHHhcCCCH----HHHHHHHH------------HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C
Q 000173 1746 VVKVFQRALQYCDPK----KVHLALLG------------LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1808 (1935)
Q Consensus 1746 a~~vferAl~~~~~~----~v~~~l~~------------i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~ 1808 (1935)
|.+-|+..|+..|++ ..+..++- -+.-+|++..|.++...++...+....++...+.+|... +
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc
Confidence 999999999999853 33333322 345678999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------HHHc
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ------------EIRL 1876 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~------------e~k~ 1876 (1935)
+..|..-+..+-+.-..+ -+.++..+++++..|+.+.+....+.+|+.+|+...-+-.|-.+ .+..
T Consensus 205 ~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~ 282 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLSQDN--TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEE 282 (504)
T ss_pred HHHHHHHHHHHHhccccc--hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999888776555 48999999999999999999999999999999875544333322 2345
Q ss_pred CCHHHHHHHHHHHHh
Q 000173 1877 GDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1877 g~~e~ar~lferal~ 1891 (1935)
+++..+..-.+.++.
T Consensus 283 ~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLK 297 (504)
T ss_pred hhHHHHHHHHHHHHh
Confidence 777777788888887
|
|
| >PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-07 Score=124.88 Aligned_cols=77 Identities=35% Similarity=0.673 Sum_probs=72.0
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..++++|+++.|+|+++.+||+||+|.+ +.+||+|+|++++.++.++.+.|++||.|+|+|+++|++ +||.||+|..
T Consensus 616 ~~~~~vG~v~~G~V~~I~~fGafVei~~-~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~~ 692 (693)
T PRK11824 616 TAEPEVGEIYEGKVVRIVDFGAFVEILP-GKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKAV 692 (693)
T ss_pred cccCcCCeEEEEEEEEEECCeEEEEECC-CCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEec
Confidence 3568999999999999999999999986 799999999999999999999999999999999999977 9999999863
|
|
| >TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-07 Score=120.75 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=66.0
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccC----cccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV----DGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls----~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
++++|+++.|.|++|++||+||++.+|+.||+|+|+++ +.++.++++.|++||.|+|+|+++|+ ++|+.|+
T Consensus 644 ~~~vG~i~~GkV~~I~dfGaFVel~~G~eGLvHISeisdls~~~rv~~~~dv~kvGd~V~VKVl~ID~-~gKI~L~ 718 (719)
T TIGR02696 644 MPEVGERFLGTVVKTTAFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLSVGQKIQVEIADIDD-RGKLSLV 718 (719)
T ss_pred cCCCCCEEEEEEEEEECceEEEEecCCceEEEEhhhccccccccCcCCHHHcCCCCCEEEEEEEEECC-CCCeeec
Confidence 46899999999999999999999999999999999996 47889999999999999999999995 7899886
|
Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase. |
| >PRK03987 translation initiation factor IF-2 subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.3e-07 Score=106.75 Aligned_cols=78 Identities=23% Similarity=0.425 Sum_probs=72.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC--CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~--~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++|++|.|.|++|.++|+||+|.. +++|++|++++++.+..++.+.|++||.|.|+|+++|+++++|.||+|....+
T Consensus 6 P~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~v~~~ 85 (262)
T PRK03987 6 PEEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKRVNEH 85 (262)
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEecccc
Confidence 3689999999999999999999975 79999999999999999999999999999999999999999999999976543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-06 Score=92.66 Aligned_cols=117 Identities=9% Similarity=-0.050 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1779 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1857 (1935)
Q Consensus 1779 A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~ 1857 (1935)
-..+|++++...|. .|+.++..+... ++++|...|++++...|.+ ..+|..+|..+...|++++|...|++++.
T Consensus 12 ~~~~~~~al~~~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPE---TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS--WRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35788888887543 477888888888 9999999999999999887 59999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000173 1858 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1903 (1935)
Q Consensus 1858 ~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~ 1903 (1935)
..|.+.+.|..++..+...|++++|+..|++++. +.|... ..|
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~-~~~ 129 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADA-SWS 129 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHH
Confidence 9999999999999999999999999999999999 777776 344
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-06 Score=90.87 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=106.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000173 1781 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1781 el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~ 1859 (1935)
++|++++...|.+....+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|..+|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 568888888888888899999999999 9999999999999999876 5999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1860 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1860 Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
|.+.+.|..++.++...|+.++|...|++++. +.|...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 119 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENP 119 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccc
Confidence 99999999999999999999999999999998 555444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-07 Score=105.61 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=71.3
Q ss_pred CCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 761 PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f~--~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
.|..+.|+|.+|.+||+||.+. +|+.||+|.|+++...+.++.+++++||.|.|+|++||+.++-+-||||....
T Consensus 11 eGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkrV~~ 87 (269)
T COG1093 11 EGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKRVTE 87 (269)
T ss_pred CCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhhCCH
Confidence 6999999999999999999986 69999999999999999999999999999999999999999999999998754
|
|
| >cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-07 Score=84.48 Aligned_cols=65 Identities=35% Similarity=0.527 Sum_probs=60.5
Q ss_pred EEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 765 ~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
+.|+|.++.++|+||++.+++.||+|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 36899999999999999999999999999998887788889999999999999999999999875
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-05 Score=93.06 Aligned_cols=214 Identities=12% Similarity=0.100 Sum_probs=159.5
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..++...-+.++..+..++.+..+-......+|++++|.+.|..||..-. ..........--...+| ..++|.
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-----sc~ealfniglt~e~~~--~ldeal 544 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-----SCTEALFNIGLTAEALG--NLDEAL 544 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-----HHHHHHHHhcccHHHhc--CHHHHH
Confidence 44555555566666677777777766666778999999999999995322 11112222222245567 458888
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~-~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
+.|-+.-... +.-++...++++|+...+...|.++|.++....|+.+.+...++..|-+. +-.+|.+++-..-..+|.
T Consensus 545 d~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 545 DCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence 8877665443 33488899999999999999999999999999999999999999988888 888888888888888887
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI-YLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~-ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+ +++..-+|..|....=.|+|..+||++--..|... -|.. .+....+.|++.+|..+|...-.
T Consensus 625 n--ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 625 N--IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred c--hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7 56666677777777778999999999988888754 4544 44555678999999999988666
|
|
| >cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-07 Score=83.14 Aligned_cols=65 Identities=34% Similarity=0.581 Sum_probs=61.2
Q ss_pred EEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000173 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1935)
Q Consensus 1382 v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lS 1446 (1935)
+.|+|.++.++|+||+++.+.+|++|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 47999999999999999999999999999999988888999999999999999999989998875
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-05 Score=104.55 Aligned_cols=211 Identities=13% Similarity=0.071 Sum_probs=141.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCC----------------CHH
Q 000173 1681 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP----------------PEE 1744 (1935)
Q Consensus 1681 ~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~----------------~~e 1744 (1935)
.+|.+..+|..++..+...+++++|..+.+.+++..|-+ +.+|+..+.++.+.+.+ ...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~-----i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~ 100 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS-----ISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWA 100 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc-----eehHHHHHHHHHhhcchhhhhhhhhhhhcccccchh
Confidence 468999999999999999999999999999999876632 34555544455554422 011
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCC
Q 000173 1745 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p 1824 (1935)
....++.+.+.+..+...++.++.+|.+.|++++|..+|+++++..+.++.+..+||.+|...++++|++++.+|++.+=
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22223333333333346888889999999999999999999999999999999999988877799999999999987643
Q ss_pred CCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000173 1825 RHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYP--KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1825 ~~~~----~~~~~~~a~le~~~g~~e~Ar~ife~al~~~P--k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~ 1898 (1935)
..++ ..+|..+.... .-+.+.=..+.++++.... .-.++|.-.-..+...++++++..+|.+++. ..|++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n 256 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYN--SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKN 256 (906)
T ss_pred hhhcchHHHHHHHHHHhcC--cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcc
Confidence 2211 12333333211 1123333333334333321 2233444444555566788899999999998 66665
Q ss_pred HH
Q 000173 1899 MK 1900 (1935)
Q Consensus 1899 ~k 1900 (1935)
.+
T Consensus 257 ~~ 258 (906)
T PRK14720 257 NK 258 (906)
T ss_pred hh
Confidence 53
|
|
| >cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.2e-07 Score=89.27 Aligned_cols=73 Identities=25% Similarity=0.539 Sum_probs=63.3
Q ss_pred cEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccC-----------cccccCCCCEEEEEEEEEecCC-----Ce
Q 000173 1470 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-----------IETIYRAGEKVKVKILKVDKEK-----RR 1533 (1935)
Q Consensus 1470 ~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~-----------~~~~~~~Gd~V~~~Il~id~~~-----~r 1533 (1935)
+++.|+|+++.++|+||+|. +++|++|++++++++... ....|++||.|+++|.++|.+. ++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~--~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~ 78 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG--PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESK 78 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc--CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCce
Confidence 47899999999999999996 499999999998876543 3478999999999999999774 58
Q ss_pred eEEeccccccC
Q 000173 1534 ISLGMKSSYFK 1544 (1935)
Q Consensus 1534 i~lslK~~~~~ 1544 (1935)
|.||+|..+++
T Consensus 79 i~ls~k~~~~g 89 (99)
T cd04460 79 IGLTMRQPGLG 89 (99)
T ss_pred EEEEEecCCCC
Confidence 99999997764
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core. |
| >TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=5e-07 Score=119.72 Aligned_cols=72 Identities=36% Similarity=0.698 Sum_probs=66.7
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEE
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~l 1536 (1935)
...+++|++|.|+|+++.+||+||+|.+ +++||+|+|++++.++.++.+.|++||.|+|+|+++|. ++||+|
T Consensus 613 ~~~~~~G~i~~G~V~~I~~~GafVei~~-g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 613 TAEPEVGKIYEGKVVRIMDFGAFVEILP-GKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred hcccccCcEEEEEEEEEeCCEEEEEECC-CcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 3467999999999999999999999986 79999999999999999999999999999999999996 788764
|
Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family). |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.7e-06 Score=99.55 Aligned_cols=158 Identities=16% Similarity=0.238 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000173 1673 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1752 (1935)
Q Consensus 1673 ~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vfer 1752 (1935)
..|++.+..+|++..+|+.|+.++............ .... ..+.-..+|+|
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~---------------------------~~~a--~~E~klsiler 56 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKA---------------------------ERRA--LAERKLSILER 56 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchh---------------------------hHHH--HHHHHHHHHHH
Confidence 467889999999999999999998655431111000 0000 11223334444
Q ss_pred HHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHHHHHHhCCCC-
Q 000173 1753 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRH- 1826 (1935)
Q Consensus 1753 Al~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ralk~~p~~- 1826 (1935)
||+.+|.. .+++.|+.++.+.-..++..+.+++++..++++..+|..|+.+.... .+...+.+|.++|..+...
T Consensus 57 AL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~ 136 (321)
T PF08424_consen 57 ALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRR 136 (321)
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhh
Confidence 44444432 44444444444444444445555555555555666666666655553 4556666666665544221
Q ss_pred ---------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000173 1827 ---------------KHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1827 ---------------~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~ 1859 (1935)
..+.++..++.|+.+.|..|+|..+++-++..+
T Consensus 137 ~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 137 SGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 125788889999999999999999999999864
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3e-05 Score=98.06 Aligned_cols=219 Identities=17% Similarity=0.196 Sum_probs=170.6
Q ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc---------------hhhH-------HHHH
Q 000173 1672 PDEFERLVRSSP-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE---------------ENEK-------LNIW 1728 (1935)
Q Consensus 1672 ~~~ferll~~~P-~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e---------------e~Ek-------l~lW 1728 (1935)
-+...++|..+| ++...|.-++...-.++++..|..+-+-|+...+.+. -.|. +.+|
T Consensus 498 l~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w 577 (799)
T KOG4162|consen 498 LDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW 577 (799)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 334456666644 7899999999999999999999999999998665421 1111 2445
Q ss_pred HHHHHHHHHcCCC--------------CHHHHHHHHHHHHhc--------C-----C--------C------HHHHHHHH
Q 000173 1729 VAYFNLENEYGNP--------------PEEAVVKVFQRALQY--------C-----D--------P------KKVHLALL 1767 (1935)
Q Consensus 1729 ~ayl~le~~~g~~--------------~~e~a~~vferAl~~--------~-----~--------~------~~v~~~l~ 1767 (1935)
-+.-.++...++. +...+...+.++... + | . ..+|...+
T Consensus 578 e~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa 657 (799)
T KOG4162|consen 578 EAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAA 657 (799)
T ss_pred HhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHH
Confidence 5222221111100 112223333333321 1 1 1 27899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000173 1768 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1768 ~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e 1846 (1935)
..+...+..++|..++.++-+.++-+..+|+..+..+... +.++|.+.|..|+..+|.+ +......|.++.+.|+.-
T Consensus 658 ~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h--v~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 658 DLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH--VPSMTALAELLLELGSPR 735 (799)
T ss_pred HHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999 9999999999999999987 699999999999999765
Q ss_pred HHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1847 RGRS--MFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1847 ~Ar~--ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
-|.. ++..+++.+|.+.++|+.++.+..+.|+.++|-..|.-|+.+
T Consensus 736 la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 5555 999999999999999999999999999999999999999984
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00014 Score=85.59 Aligned_cols=249 Identities=11% Similarity=0.045 Sum_probs=185.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--------------hhhHHHHHHHHH-HHH---
Q 000173 1674 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--------------ENEKLNIWVAYF-NLE--- 1735 (1935)
Q Consensus 1674 ~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e--------------e~Ekl~lW~ayl-~le--- 1735 (1935)
.|-.....-|+|..+...++..+...|+.+.|...|+++....|+.- +.|+.+-.+.|+ +.-
T Consensus 220 l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t 299 (564)
T KOG1174|consen 220 LMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT 299 (564)
T ss_pred HHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc
Confidence 44444556799999999999999999999999999999996555421 111111111111 100
Q ss_pred ---------HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000173 1736 ---------NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1805 (1935)
Q Consensus 1736 ---------~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~ 1805 (1935)
..+.....++|....+++++.++.. ..++.-++++.+.++.++|.=.|..+...-|-....|..+...|+
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 0000002356666667777776665 788888888889999999999999888877778888888888888
Q ss_pred Hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1806 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA-ILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1806 ~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a-~le~-~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
.. .+.+|..+-..+++.+|.+. +....++ ..++ .----|+|.+.++++|+..|...-.-...+.++...|..+.+
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA--~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSA--RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcch--hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchH
Confidence 88 88888888888888888774 6777775 4333 334579999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
..++++++. ..++. .+.....++........++..-|..|+.
T Consensus 458 i~LLe~~L~--~~~D~--~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 458 IKLLEKHLI--IFPDV--NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHh--hcccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999998 55554 3677777777767667777777766654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00058 Score=81.30 Aligned_cols=251 Identities=15% Similarity=0.117 Sum_probs=171.6
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++.+++.....+.-...+.....++--+...-+.|++++|=....+|-+..+..+ +.+-+....+....+++ .
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~----l~v~ltrarlll~~~d~--~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT----LAVELTRARLLLNRRDY--P 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch----HHHHHHHHHHHHhCCCc--h
Confidence 34444443333333233344455555555555677888888888888876433222 55667777777777744 8
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhc---------------------------------
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF--------------------------------- 1790 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~--------------------------------- 1790 (1935)
.|+.-..+++...|.. .+..-...+|.+.|.+.....+..++.|.-
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 8888888888887764 444445556666666666555555544321
Q ss_pred ---------CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000173 1791 ---------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1860 (1935)
Q Consensus 1791 ---------~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~P 1860 (1935)
..++.+-..|+..+.+. ..++|.++.+.+++..-+. .+...+.. .+-++++.=.+..|+.++..|
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~---~L~~~~~~--l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP---RLCRLIPR--LRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh---hHHHHHhh--cCCCCchHHHHHHHHHHHhCC
Confidence 24466667777777777 8888888888888765332 32222222 245677778888888899999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1861 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1861 k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
.+..+|+.+.+++++.+.+.+|...|+.|+. ..|... -|....+...+.|+.+.+.++++.++-..
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~--~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSAS--DYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChh--hHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 444333 35555566677999999999999998443
|
|
| >PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.2e-07 Score=117.55 Aligned_cols=75 Identities=25% Similarity=0.428 Sum_probs=71.4
Q ss_pred cccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000173 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1935)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~ 832 (1935)
.+.++|+++.|.|+++++||+||++.++..||+|+|+++++++.++.+.|++||.|+|+|+++|++ +|+.||+|.
T Consensus 617 ~~~~vG~v~~G~V~~I~~fGafVei~~~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~ 691 (693)
T PRK11824 617 AEPEVGEIYEGKVVRIVDFGAFVEILPGKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKA 691 (693)
T ss_pred ccCcCCeEEEEEEEEEECCeEEEEECCCCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEe
Confidence 357899999999999999999999999999999999999999999999999999999999999987 999999985
|
|
| >PRK09521 exosome complex RNA-binding protein Csl4; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.2e-06 Score=94.94 Aligned_cols=74 Identities=30% Similarity=0.420 Sum_probs=67.6
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeC----------CCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEE
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLS----------RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~----------~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri 1443 (1935)
..+++|++|.|+|+++.++|+||+|+ .+++|++|++++++.+..++.+.|++||.|.|+|++++ +++
T Consensus 60 ~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~~~~~~~~~~~~~GD~V~akV~~i~---~~i 136 (189)
T PRK09521 60 PLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSDGYVESLTDAFKIGDIVRAKVISYT---DPL 136 (189)
T ss_pred CCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcChhhhhhHHhccCCCCEEEEEEEecC---CcE
Confidence 34689999999999999999999984 46899999999999998899999999999999999998 789
Q ss_pred EEEEecC
Q 000173 1444 EVTLKTS 1450 (1935)
Q Consensus 1444 ~lSlk~~ 1450 (1935)
.||++..
T Consensus 137 ~LS~k~~ 143 (189)
T PRK09521 137 QLSTKGK 143 (189)
T ss_pred EEEEecC
Confidence 9999864
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.9e-05 Score=94.34 Aligned_cols=130 Identities=14% Similarity=0.037 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1760 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
...|+..+--+.+.++++.|+..+..+++..|+++-.|...++.+++. +..+|.+.|++++...|.. .-+|+.||+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~a 383 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQA 383 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHH
Confidence 478888888899999999999999999999999999999999999999 9999999999999999987 5899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1839 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1839 e~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+++.|++.+|..++.+.+..+|.+.+.|..+++.+-.+|+..++..-+-....
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888776666555
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00032 Score=90.14 Aligned_cols=89 Identities=10% Similarity=0.003 Sum_probs=54.1
Q ss_pred HHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 000173 1801 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1879 (1935)
Q Consensus 1801 ~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~ 1879 (1935)
++.+... ++++|.++.++||...|.. +++++.-|.++-..|++.+|-..++.+-..++.+--+-...+...++.|++
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~--~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTL--VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCH
Confidence 5544444 6666666666666666555 466666666666666666666666666666665555666666666666666
Q ss_pred HHHHHHHHHHHh
Q 000173 1880 DLIRGLFERAIS 1891 (1935)
Q Consensus 1880 e~ar~lferal~ 1891 (1935)
+.|+.++...+.
T Consensus 279 e~A~~~~~~Ftr 290 (517)
T PF12569_consen 279 EEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHhhcC
Confidence 666665555544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-05 Score=103.26 Aligned_cols=149 Identities=10% Similarity=0.022 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHH
Q 000173 1722 NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR 1800 (1935)
Q Consensus 1722 ~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~ 1800 (1935)
......|.++++++...++ .++|.++.+.+++.+|.. ..|+.++.+|.+.+++.+|.-+ +++..++...+
T Consensus 28 p~n~~a~~~Li~~~~~~~~--~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~----- 98 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENL--TDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK----- 98 (906)
T ss_pred cchHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc-----
Confidence 3456799999999989994 599999999999999986 8888888899888888777766 66666654441
Q ss_pred HHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000173 1801 VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1880 (1935)
Q Consensus 1801 ~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e 1880 (1935)
. .+.+.|..++...+.++ .++..+|.+|-++|+.++|..+|+++|+.+|++..+.+.||.++... +.+
T Consensus 99 --------~-~~ve~~~~~i~~~~~~k--~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 99 --------W-AIVEHICDKILLYGENK--LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred --------h-hHHHHHHHHHHhhhhhh--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 2 11122222222222222 24444444444455555555555555555555555555555444444 455
Q ss_pred HHHHHHHHHHh
Q 000173 1881 LIRGLFERAIS 1891 (1935)
Q Consensus 1881 ~ar~lferal~ 1891 (1935)
+|+.++.+|+.
T Consensus 167 KA~~m~~KAV~ 177 (906)
T PRK14720 167 KAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=97.01 Aligned_cols=98 Identities=20% Similarity=0.312 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 000173 1777 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSMFEG 1854 (1935)
Q Consensus 1777 ~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~-~e~Ar~ife~ 1854 (1935)
.....+|.+++.+|+....+|..|+.|..+. .+.+...+|..||+.+|.+ +.+|...|.++|.-+. .+.||++|.+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~--~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN--PDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--chhHHhhhhhHHhhccchHHHHHHHHH
Confidence 4567889999999999999999999998888 7999999999999999998 5999999999998775 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHc
Q 000173 1855 ILSEYPKRTDLWSIYLDQEIRL 1876 (1935)
Q Consensus 1855 al~~~Pk~~dlw~~ya~~e~k~ 1876 (1935)
+|+.+|.+..+|..|.+||...
T Consensus 166 gLR~npdsp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFRMELMY 187 (568)
T ss_pred HhhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999864
|
|
| >cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.4e-06 Score=77.59 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=56.2
Q ss_pred ccEEEEEEEEeecceeEEEeccCCceeEEEeeeecCCc---------cccCCCeE-EEEEEEeeccccEEEEeeh
Q 000173 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA---------TVESGSVI-QAAILDVAKAERLVDLSLK 939 (1935)
Q Consensus 875 G~~v~g~V~~~~~~g~~v~~~~~~~v~g~i~~~~ls~~---------~~~~G~~v-~~~vl~~~~~~~~v~ls~k 939 (1935)
|++|+|+|.++++++++|++.+. ++.|++|..||||+ ++++||++ .++|+ +...+.+.+|.|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l~~~-~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL--~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAILPE-EIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCL--SNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEecCC-CcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEE--eccccEEEEecC
Confidence 78999999999999999999986 89999999999993 79999999 67777 888899988865
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00036 Score=87.04 Aligned_cols=131 Identities=9% Similarity=0.082 Sum_probs=96.0
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
-.+|+..|..+|...|+|..+|..++..+.|.++++-....-.+.++..|.+ ..-|+.++--+...|++ ..|.
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~-----ra~w~~~Avs~~L~g~y--~~A~ 163 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ-----RASWIGFAVAQHLLGEY--KMAL 163 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHH--HHHH
Confidence 3467889999999999999999999999999999999988888888766642 24788888777777744 5555
Q ss_pred HHHHHHHhcC---CCH----------------------------------------HHHHHHHHHHHHcCChHHHHHHHH
Q 000173 1748 KVFQRALQYC---DPK----------------------------------------KVHLALLGLYERTEQNKLADELLY 1784 (1935)
Q Consensus 1748 ~vferAl~~~---~~~----------------------------------------~v~~~l~~i~~~~~~~~~A~el~~ 1784 (1935)
.+.+...+.+ ++. ..-...+.++.+.+++++|..+|.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 5555444433 221 111222337788899999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHH
Q 000173 1785 KMIKKFKHSCKVWLRRVQRLL 1805 (1935)
Q Consensus 1785 ~~~k~~~~~~~vw~~~~~~l~ 1805 (1935)
+++.++|++..-+..|-..+.
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHH
Confidence 999999988777766665553
|
|
| >PRK04163 exosome complex RNA-binding protein Rrp4; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.4e-06 Score=94.88 Aligned_cols=79 Identities=25% Similarity=0.370 Sum_probs=69.9
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc----cCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----DNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~----~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
-.++||+|.|+|+++.++|+||.|.. ...|++|++++++.++ .++...|++||.|+|+|++++++ +++.||+|.
T Consensus 60 ~P~vGDiViG~V~~i~~~~~~vdI~~-~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~~-~~~~LS~k~ 137 (235)
T PRK04163 60 IPKVGDLVIGKVTDVTFSGWEVDINS-PYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDRT-RDVVLTLKG 137 (235)
T ss_pred cCCCCCEEEEEEEEEeCceEEEEeCC-CceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECCC-CcEEEEEcC
Confidence 35899999999999999999999975 6899999999999877 67888999999999999999854 459999998
Q ss_pred cccCC
Q 000173 1541 SYFKN 1545 (1935)
Q Consensus 1541 ~~~~~ 1545 (1935)
.+++.
T Consensus 138 ~~lG~ 142 (235)
T PRK04163 138 KGLGK 142 (235)
T ss_pred CCCCc
Confidence 76643
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00016 Score=81.89 Aligned_cols=156 Identities=12% Similarity=0.041 Sum_probs=128.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 000173 1729 VAYFNLENEYGNPPEEAVVKVFQR-ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1807 (1935)
Q Consensus 1729 ~ayl~le~~~g~~~~e~a~~vfer-Al~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~ 1807 (1935)
..+...+...|. .+....+... ++.+.....+...++....+.|++..|...|.++...-|++...|..++-.|.+.
T Consensus 70 ~~~a~a~~~~G~--a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGD--ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhccc--ccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 555566666663 2334444444 4444444577777888888999999999999999999899999999999999999
Q ss_pred -CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1808 -QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1886 (1935)
Q Consensus 1808 -~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lf 1886 (1935)
+++.|+..|.+|++..|... .+..++|.+++-.|+++.|++++..+...-+.+..+-..++......|+++.|+++-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999999998884 889999999999999999999999998888888889999999999999999998877
Q ss_pred HH
Q 000173 1887 ER 1888 (1935)
Q Consensus 1887 er 1888 (1935)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 65
|
|
| >PRK09202 nusA transcription elongation factor NusA; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-06 Score=107.16 Aligned_cols=107 Identities=20% Similarity=0.259 Sum_probs=84.0
Q ss_pred CCCCCCEEEEEEEEEeCC-eEEEEEecccccchh-----hHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecC
Q 000173 542 KFKVGAELVFRVLGVKSK-RITVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v~~~-~i~ltlK~~l~~~~~-----~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~ 615 (1935)
.+++|+.+++.|...+-+ ....+.|+.+..... .++..|.+ +.|+++.|+|.++.++|+||++ +++.||+|.
T Consensus 86 ~~~vGD~ie~~I~~~~fgRia~q~aKq~i~Qkire~ere~i~~eyk~-~~GeIV~G~V~ri~~~giiVDL-ggvea~LP~ 163 (470)
T PRK09202 86 DAEVGDYIEEEIESVDFGRIAAQTAKQVIVQKIREAERERVYEEYKD-RVGEIITGVVKRVERGNIIVDL-GRAEAILPR 163 (470)
T ss_pred cccCCCeEEEEEccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCEEEEE-CCeEEEecH
Confidence 489999999998877433 334444444444332 22333422 3899999999999999999999 789999999
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCC--EEEEEEee
Q 000173 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFMM 656 (1935)
Q Consensus 616 se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~--ri~lS~k~ 656 (1935)
++++ |.+.|++|+.++|.|++++++++ .+.||...
T Consensus 164 sE~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt~ 200 (470)
T PRK09202 164 KEQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRTH 200 (470)
T ss_pred HHcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeCc
Confidence 9995 66789999999999999999877 99999864
|
|
| >TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.8e-06 Score=111.49 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=66.1
Q ss_pred cccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEE
Q 000173 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828 (1935)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~L 828 (1935)
...++|+++.|.|++|.++|+||++++++.||+|+|++++.++.++.+.|++||.|+|+|+++|. ++|+.|
T Consensus 614 ~~~~~G~i~~G~V~~I~~~GafVei~~g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 614 AEPEVGKIYEGKVVRIMDFGAFVEILPGKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred cccccCcEEEEEEEEEeCCEEEEEECCCcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 34678999999999999999999999999999999999999999999999999999999999997 677754
|
Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family). |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00089 Score=79.79 Aligned_cols=226 Identities=16% Similarity=0.179 Sum_probs=169.1
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchhhHHH--HHHHH
Q 000173 1655 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLN--IWVAY 1731 (1935)
Q Consensus 1655 ~~~~~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~-~ee~Ekl~--lW~ay 1731 (1935)
+++..+.-+...+.|.++.-.+.++...|.+...-.-..++|...|++.....+....-+.--. .+|..++. .|...
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 5666666666677999999999999999999999999999999999999999888776664332 24445543 33433
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000173 1732 FNLENEYGNPPEEAVVKVFQRALQYCDP-----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1806 (1935)
Q Consensus 1732 l~le~~~g~~~~e~a~~vferAl~~~~~-----~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~ 1806 (1935)
++-...-+ ..+... ...+..|. -.+-..++.-+.+.+.+++|.++.+.++++.-+.. .+.++.++.-
T Consensus 236 L~q~~~~~--~~~gL~----~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~ 307 (400)
T COG3071 236 LQQARDDN--GSEGLK----TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRP 307 (400)
T ss_pred HHHHhccc--cchHHH----HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCC
Confidence 33211111 112222 22233332 27788888999999999999999999998763332 2222221111
Q ss_pred cCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1807 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1886 (1935)
Q Consensus 1807 ~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lf 1886 (1935)
.++..-.+..+..++..|... .+++.+|+++++++.+.+|...|+.++..-|.. .-|...++.+.+.|+...|..++
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHH
Confidence 177888889999999999884 899999999999999999999999999887764 55777889999999999999999
Q ss_pred HHHHh
Q 000173 1887 ERAIS 1891 (1935)
Q Consensus 1887 eral~ 1891 (1935)
+.++.
T Consensus 385 ~e~L~ 389 (400)
T COG3071 385 REALL 389 (400)
T ss_pred HHHHH
Confidence 99986
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0004 Score=89.25 Aligned_cols=224 Identities=13% Similarity=0.134 Sum_probs=154.7
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhccccchhhH----------H-HHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM-----ADVEKARSIAERALQTINIREENEK----------L-NIWV 1729 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~-----~e~dkAr~v~erAl~~i~~~ee~Ek----------l-~lW~ 1729 (1935)
++..+|...|..+|..||+|...+..|....... ...+...++|+......|...-..+ + ..-.
T Consensus 52 g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~ 131 (517)
T PF12569_consen 52 GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLD 131 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHH
Confidence 5577899999999999999999998888887222 2567777888876554432211111 1 2233
Q ss_pred HHHHHHHHcCCC-----------CHH---HHHHHHHHHH---hcC-------------CCHHHH--HHHHHHHHHcCChH
Q 000173 1730 AYFNLENEYGNP-----------PEE---AVVKVFQRAL---QYC-------------DPKKVH--LALLGLYERTEQNK 1777 (1935)
Q Consensus 1730 ayl~le~~~g~~-----------~~e---~a~~vferAl---~~~-------------~~~~v~--~~l~~i~~~~~~~~ 1777 (1935)
.|+.-..+-|-| +.+ ....+++..+ +.+ |..-+| +-+++.|...|+++
T Consensus 132 ~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~ 211 (517)
T PF12569_consen 132 EYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYE 211 (517)
T ss_pred HHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHH
Confidence 344333333321 112 2222222222 111 112456 55688999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1778 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1778 ~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al 1856 (1935)
+|.+..++++..-|..+++++.-|.++... ++.+|.+.++.|-+..+.+. -+-.+.+..+++.|+.++|..++....
T Consensus 212 ~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR--yiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 212 KALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR--YINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999 99999999999999988775 677888999999999999999998877
Q ss_pred HhC--CC-CHH----HHHHHHHHHH--HcCCHHHHHHHHHHHHh
Q 000173 1857 SEY--PK-RTD----LWSIYLDQEI--RLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1857 ~~~--Pk-~~d----lw~~ya~~e~--k~g~~e~ar~lferal~ 1891 (1935)
+.. |. +.. +|+..-.-+. +.|++..|...|..+..
T Consensus 290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 654 22 111 4655544442 56777777666665443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.2e-05 Score=87.99 Aligned_cols=118 Identities=18% Similarity=0.143 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQ 1817 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ 1817 (1935)
.+....-.+.-++.+|.+ +-|..|+.+|.+.+++..|...|.++.+.-++++.+|..|++.++.+ ...+++.+|.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 567777888889999987 99999999999999999999999999999999999999999999988 6788999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1818 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1818 ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
++++..|.+ +...+.+|.-+|..|++.+|...++..|...|.+
T Consensus 218 ~al~~D~~~--iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPAN--IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 999998877 7899999999999999999999999999999886
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00021 Score=87.05 Aligned_cols=129 Identities=9% Similarity=0.058 Sum_probs=115.5
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1869 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~y 1869 (1935)
+.....|+-.+.-++.. +++.|+..+...++..|++ +-+|...++++++.+++++|.+.|++++..+|...-+|..|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N--~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN--PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 57788999988888888 9999999999999999988 58999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1870 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1924 (1935)
Q Consensus 1870 a~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~ 1924 (1935)
++.+++.|++.+|..++.+.+. ..|..+ .+|.....-+..+|+..++...+.
T Consensus 381 a~all~~g~~~eai~~L~~~~~--~~p~dp-~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLF--NDPEDP-NGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCCCc-hHHHHHHHHHHHhCchHHHHHHHH
Confidence 9999999999999999999998 666777 689888888888888766655443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-05 Score=75.26 Aligned_cols=96 Identities=19% Similarity=0.137 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
|+.++.++...+++++|...|+++++..+....+|+.++..+... ++++|.+.|++++...|... .+|..+|.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555 55555555555555554442 455555555555
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 000173 1842 NGVADRGRSMFEGILSEYP 1860 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~P 1860 (1935)
.|++++|...|++++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 5555555555555555444
|
|
| >cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.2e-06 Score=81.33 Aligned_cols=75 Identities=20% Similarity=0.434 Sum_probs=64.8
Q ss_pred CEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCC-----------ccccCCCCcEEEEEEEEEeCCC-----CEE
Q 000173 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES-----------PEKEFPIGKLVAGRVLSVEPLS-----KRV 1443 (1935)
Q Consensus 1380 ~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~-----------~~~~f~~G~~V~~kVl~vd~~~-----~ri 1443 (1935)
+++.|.|+++.++|+||+|. .++|++|++++++++... +...|++||.|+++|.++|.+. +++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~-~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~i 79 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG-PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESKI 79 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc-CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCceE
Confidence 47899999999999999998 599999999999876532 4578999999999999999764 589
Q ss_pred EEEEecCccccc
Q 000173 1444 EVTLKTSDSRTA 1455 (1935)
Q Consensus 1444 ~lSlk~~~~~~~ 1455 (1935)
.||++.....++
T Consensus 80 ~ls~k~~~~g~~ 91 (99)
T cd04460 80 GLTMRQPGLGKL 91 (99)
T ss_pred EEEEecCCCCcH
Confidence 999999877654
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-05 Score=94.77 Aligned_cols=106 Identities=14% Similarity=0.020 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1842 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1842 (1935)
...++.+...+++++|.++|.+++...|.+..+|+.++..++.. ++++|...|++|+...|.+ ..+|..+|.+++..
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHh
Confidence 34456667889999999999999999999999999999999999 9999999999999999876 58899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1843 GVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1843 g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
|++++|...|++++...|.+..++.....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999998776433333
|
|
| >PRK04163 exosome complex RNA-binding protein Rrp4; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-05 Score=90.31 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=64.8
Q ss_pred CCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCC----CCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEee
Q 000173 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG----CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1935)
Q Consensus 584 ~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~----~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~ 656 (1935)
++|+++.|+|+++.++|++|++..+..|++|.+++++.++ .++.+.|++|+.|.|+|+++++++ .+.||++.
T Consensus 62 ~vGDiViG~V~~i~~~~~~vdI~~~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~~~-~~~LS~k~ 137 (235)
T PRK04163 62 KVGDLVIGKVTDVTFSGWEVDINSPYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDRTR-DVVLTLKG 137 (235)
T ss_pred CCCCEEEEEEEEEeCceEEEEeCCCceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECCCC-cEEEEEcC
Confidence 5799999999999999999999889999999999987654 577788999999999999999764 49999975
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00023 Score=88.74 Aligned_cols=216 Identities=15% Similarity=0.108 Sum_probs=160.3
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..+|-.....+++.++.|..-|.-|+-.+-...++++|...|.+|+.. ...+ +.+|..+.-|+.+++ +.+-..
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-~~dN----~qilrDlslLQ~QmR--d~~~~~ 129 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-EKDN----LQILRDLSLLQIQMR--DYEGYL 129 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCc----HHHHHHHHHHHHHHH--hhhhHH
Confidence 334444555778889999999999999999999999999999999964 3333 579999999999999 448889
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC
Q 000173 1748 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1748 ~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~--~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~ 1823 (1935)
..-.+.++..|.. .-|+.++-.+.-.+.+..|.++.+...+.. +.+...+-..-.++.+. ...++- .++.+++.+
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g-~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG-SLQKALEHL 208 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHH
Confidence 9999999999986 889999999999999999999988877655 34555555444444444 222221 145555544
Q ss_pred CCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 000173 1824 PRHK-----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR-LGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1824 p~~~-----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k-~g~~e~ar~lferal~ 1891 (1935)
-..+ ...+...-|.++++.+++++|..+|..++..+|++.+-+..|...+.+ .+..+....+|.+.-+
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3221 135566667788999999999999999999999998877666666643 3344444477776554
|
|
| >cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-05 Score=73.23 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=54.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCC--CEEEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--KRVEVT 1446 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~--~ri~lS 1446 (1935)
+.|++|+|+|.++.++|+||+++. .+|++|.++++ |.+.|++|+.+++.|++++.++ .+|.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig~-~eg~lp~~e~~------~~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLGK-VEAILPKKEQI------PGESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcCC-eEEEeeHHHCC------CCCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 469999999999999999999985 99999999987 3457899999999999998654 356666
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00015 Score=85.97 Aligned_cols=259 Identities=14% Similarity=0.117 Sum_probs=175.4
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHH---HHHcCCCC
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--ENEKLNIWVAYFNL---ENEYGNPP 1742 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e--e~Ekl~lW~ayl~l---e~~~g~~~ 1742 (1935)
--++...|..++...|+++..|-+-++.++..++++.|.--++..++.-+... ..+--....+...+ +..+.+..
T Consensus 65 Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~ 144 (486)
T KOG0550|consen 65 YGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQ 144 (486)
T ss_pred HHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhh
Confidence 34566788899999999999999999999999999999999988886433211 00000112222221 11111110
Q ss_pred HHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQA 1814 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ 1814 (1935)
.-.+...|.+.-...+.. +.-+.-+.++...++++.|...--..++..+.+....+..+.++... +.+.|..
T Consensus 145 ~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~ 224 (486)
T KOG0550|consen 145 AYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAIN 224 (486)
T ss_pred hhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHH
Confidence 011111122211222211 22233345778889999999999999988888888888888888878 9999999
Q ss_pred HHHHHHHhCCCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHH
Q 000173 1815 VVQRALLSLPRHKH----------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT----DLWSIYLDQEIRLGDVD 1880 (1935)
Q Consensus 1815 ll~ralk~~p~~~~----------~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~----dlw~~ya~~e~k~g~~e 1880 (1935)
.|+++|...|.+.. .+.|..-|.-.|++|++..|...|-.+|.++|.+. .++...+...+++|+..
T Consensus 225 hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~ 304 (486)
T KOG0550|consen 225 HFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLR 304 (486)
T ss_pred HHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCch
Confidence 99999998887533 57888888899999999999999999999999864 46777788888999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1881 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|..--+.|+. +.+.-.+.+..+ ..-..-.++++.+.+-|++|++.
T Consensus 305 eaisdc~~Al~--iD~syikall~r-a~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 305 EAISDCNEALK--IDSSYIKALLRR-ANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhhhhh--cCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 666544322211 11222234455666666666553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.4e-05 Score=95.69 Aligned_cols=191 Identities=15% Similarity=0.108 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
..|.++..+ .. ..+.+...|-||++..++. ..|..|+.+|....+...|...|.++....+.....|-..+..+
T Consensus 462 ~~w~a~~~~---rK--~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adty 536 (1238)
T KOG1127|consen 462 EFWVALGCM---RK--NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTY 536 (1238)
T ss_pred HHHHHHHHh---hh--hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHh
Confidence 355555443 22 2377889999999999987 99999999999999999999999999999999999999999999
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1883 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar 1883 (1935)
.+. +.+.|..+.-++-+..|......-|...+-+|...++.-.|..-|+.+++.+|++...|..++..|-..|.+..|.
T Consensus 537 ae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 537 AEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred hccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHH
Confidence 999 9999999988888887776556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q 000173 1884 GLFERAISLSLPPKKMKFLFKKYL--EYEKSVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1884 ~lferal~~~~~pk~~k~l~~~yl--~~E~~~G~~e~a~~v~~rA 1926 (1935)
..|.+|.. +.|.. .|-+|- .+|...|.++.+-..+...
T Consensus 617 KvF~kAs~--LrP~s---~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 617 KVFTKASL--LRPLS---KYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HhhhhhHh--cCcHh---HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999998 76643 333333 3567778777766555443
|
|
| >cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.7e-05 Score=73.17 Aligned_cols=63 Identities=19% Similarity=0.411 Sum_probs=54.5
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCC--CeEEEe
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLS 829 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~--~rl~LS 829 (1935)
+.|+.+.|.|.+++++|+||.+. +..||+|.++++. .+.|++|+.|++.|++++.++ ..+.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig-~~eg~lp~~e~~~------~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLG-KVEAILPKKEQIP------GESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcC-CeEEEeeHHHCCC------CCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 36999999999999999999995 5999999999963 457899999999999999765 357776
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.7e-05 Score=76.53 Aligned_cols=103 Identities=10% Similarity=0.105 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTA 1836 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a 1836 (1935)
+++..+..+.+.+++++|.+.|.+++..+|++ ...++.++..++.. +++.|..+|++++...|.+. ...+|...|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45555566666666666666666666655443 44556666666666 66666666666666655532 134566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
.++.+.|++++|...|++++..+|++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0004 Score=78.84 Aligned_cols=171 Identities=11% Similarity=0.027 Sum_probs=139.5
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
...+-+....+|. ..+ ..+...|...|+-+.+........-.++....+...++...++. ++..|...|.++....|
T Consensus 53 ~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p 131 (257)
T COG5010 53 AAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP 131 (257)
T ss_pred HHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC
Confidence 3334444444454 366 77888888888888888888888777788888888899999999 99999999999999988
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1904 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~ 1904 (1935)
.+ ..+|...|..|.+.|+.+.||.-|.++++..|....+.++++..+.-.|+.+.|+.++.++.. .++.+. .+-.
T Consensus 132 ~d--~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~-~v~~ 206 (257)
T COG5010 132 TD--WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADS-RVRQ 206 (257)
T ss_pred CC--hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCch-HHHH
Confidence 88 599999999999999999999999999999999999999999999999999999999999997 554443 2333
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 000173 1905 KYLEYEKSVGEEERIEYVK 1923 (1935)
Q Consensus 1905 ~yl~~E~~~G~~e~a~~v~ 1923 (1935)
...-.-..+|+...|+++-
T Consensus 207 NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 207 NLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHhhcCChHHHHhhc
Confidence 3333445567776666543
|
|
| >TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.5e-05 Score=88.68 Aligned_cols=78 Identities=26% Similarity=0.559 Sum_probs=66.9
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEe-----c
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVD-----K 1529 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~V~~~Il~id-----~ 1529 (1935)
..+|+++.|+|++++++|+||+|+ .++|++|.+++.+++.. +....|+.||.|+++|+++| +
T Consensus 79 p~~gEvv~G~V~~v~~~GifV~lg--~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~ 156 (179)
T TIGR00448 79 PELGEIVEGEVIEIVEFGAFVSLG--PFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRP 156 (179)
T ss_pred ccCCCEEEEEEEEEEeeEEEEEeC--CceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCC
Confidence 457999999999999999999995 49999999999866542 23468999999999999998 6
Q ss_pred CCCeeEEeccccccCC
Q 000173 1530 EKRRISLGMKSSYFKN 1545 (1935)
Q Consensus 1530 ~~~ri~lslK~~~~~~ 1545 (1935)
+..+|.+|+|+.|.+.
T Consensus 157 ~~~~I~lt~k~~~LG~ 172 (179)
T TIGR00448 157 EGSKIGLTMRQPLLGK 172 (179)
T ss_pred CcceEEEEeccCcCCc
Confidence 7889999999988754
|
This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0002 Score=87.76 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=117.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc-C------------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000173 1782 LLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1848 (1935)
Q Consensus 1782 l~~~~~k~~~~~~~vw~~~~~~l~~~-~------------~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~A 1848 (1935)
-|++.++..|.+.+.|+.|+.+.... . .+....+|++||+.+|.+ ..++..|.....+.-+.+..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHH
Confidence 35666666677777777777665544 2 456678999999999866 58999999988888899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhc-----CCC----------chhHHHHHHHHHHHH
Q 000173 1849 RSMFEGILSEYPKRTDLWSIYLDQEIR---LGDVDLIRGLFERAISL-----SLP----------PKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1849 r~ife~al~~~Pk~~dlw~~ya~~e~k---~g~~e~ar~lferal~~-----~~~----------pk~~k~l~~~yl~~E 1910 (1935)
...+++++..+|.+..+|..|+++... .-.++.++.+|.+++.. .-. ...+-.+|.++..|+
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999886 34688999999999861 000 123446799999999
Q ss_pred HHcCCHHHHHHHHHHHHHHH
Q 000173 1911 KSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1911 ~~~G~~e~a~~v~~rAle~v 1930 (1935)
.+.|..+.|-.+++-.+++-
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 99999999999999888874
|
|
| >COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.7e-06 Score=103.47 Aligned_cols=104 Identities=19% Similarity=0.372 Sum_probs=82.7
Q ss_pred EEEeecCCCeEEEeccc-hhcchhc-cCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCccc
Q 000173 727 LLVLDNESSNLLLSAKY-SLINSAQ-QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804 (1935)
Q Consensus 727 vl~~d~~~~~i~ls~K~-~l~~~~~-~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~ 804 (1935)
-+.++ +.+++.++... .-.+.+. .+..-..++.+|.++.|.|++|.+||+||+|.+|=.||+|+|++++.++...++
T Consensus 584 ~Idie-ddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~l~~gkdgl~hiS~~~~~rv~kv~d 662 (692)
T COG1185 584 KIDIE-DDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLPGKDGLVHISQLAKERVEKVED 662 (692)
T ss_pred EEEec-CCCcEEEEecchHHHHHHHHHHHHHHhhcccccEEEEEEEEEeecceEEEecCCcceeEEehhhhhhhhhcccc
Confidence 34555 56666555433 2222221 222233567899999999999999999999999999999999999999999999
Q ss_pred CccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000173 805 TYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1935)
Q Consensus 805 ~f~~Gq~V~~~V~~vd~e~~rl~LSlk~ 832 (1935)
.+++||.|.|+|+.+|+ .+|+.||++.
T Consensus 663 vlk~Gd~v~Vkv~~iD~-~Gri~ls~~~ 689 (692)
T COG1185 663 VLKEGDEVKVKVIEIDK-QGRIRLSIKA 689 (692)
T ss_pred eeecCceEEEEEeeecc-cCCccceehh
Confidence 99999999999999995 6999999874
|
|
| >COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.3e-05 Score=85.75 Aligned_cols=78 Identities=29% Similarity=0.574 Sum_probs=64.9
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEecCC---
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEK--- 1531 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~V~~~Il~id~~~--- 1531 (1935)
.-.|++|.|.|.++.+||+||.|.+ .+||+|+|++.|+++. .-...|++||.|+++|+.+....
T Consensus 79 P~~gEVV~GeVv~~~~~G~fV~igp--~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~ 156 (183)
T COG1095 79 PFRGEVVEGEVVEVVEFGAFVRIGP--LDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRP 156 (183)
T ss_pred eccccEEEEEEEEEeecceEEEecc--ccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCcc
Confidence 4568999999999999999999975 8999999999988441 12348999999999999987655
Q ss_pred --CeeEEeccccccCC
Q 000173 1532 --RRISLGMKSSYFKN 1545 (1935)
Q Consensus 1532 --~ri~lslK~~~~~~ 1545 (1935)
-+|.++||+.+.+.
T Consensus 157 ~~~~I~lTmrq~~LGk 172 (183)
T COG1095 157 RESKIGLTMRQPGLGK 172 (183)
T ss_pred ccceEEEEeccccCCc
Confidence 57888998876643
|
|
| >PRK09202 nusA transcription elongation factor NusA; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.9e-06 Score=103.27 Aligned_cols=118 Identities=17% Similarity=0.263 Sum_probs=89.2
Q ss_pred ceEeeccccchHHHHhhhccccCCCEEEEEEEEEEecCCeEEEEechhhccc-----cccccccCC--CCCEEEEEEEEE
Q 000173 437 PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG-----LVFTHSDVK--PGMVVKGKVIAV 509 (1935)
Q Consensus 437 ~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~k~~~~~~-----~~~~~~~l~--~G~~v~g~V~~v 509 (1935)
.++++.++.. .....+++|+.+.+.|...+ .++....+.++..+.. +...++.++ .|++|+|+|.++
T Consensus 72 ~~eI~L~eAk-----~~~~~~~vGD~ie~~I~~~~-fgRia~q~aKq~i~Qkire~ere~i~~eyk~~~GeIV~G~V~ri 145 (470)
T PRK09202 72 TKEISLEEAR-----KIDPDAEVGDYIEEEIESVD-FGRIAAQTAKQVIVQKIREAERERVYEEYKDRVGEIITGVVKRV 145 (470)
T ss_pred cceeeHHHHh-----hhCccccCCCeEEEEEcccc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEE
Confidence 3667665442 12235899999999998766 4444444444433321 234567776 899999999999
Q ss_pred ecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCC--eEEEEEec
Q 000173 510 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSK--RITVTHKK 567 (1935)
Q Consensus 510 ~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~--~i~ltlK~ 567 (1935)
+++|++|+++ +++||+|.++++ |...|++|+.|+|.|+.+ .++ +|.||++.
T Consensus 146 ~~~giiVDLg-gvea~LP~sE~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt~ 200 (470)
T PRK09202 146 ERGNIIVDLG-RAEAILPRKEQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRTH 200 (470)
T ss_pred ecCCEEEEEC-CeEEEecHHHcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeCc
Confidence 9999999995 899999998874 778999999999999999 334 89999874
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.3e-05 Score=72.62 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1796 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1796 vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
+|+.++..+... ++++|...|+++++..|.. ..+|..+|.++...++++.|...|++++...|.+...|..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN--ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 577888888888 9999999999999888766 3788889999999999999999999999999998889999999999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 000173 1875 RLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1875 k~g~~e~ar~lferal~ 1891 (1935)
..|+.+.|...|++++.
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 99999999999999886
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0011 Score=77.76 Aligned_cols=184 Identities=11% Similarity=-0.005 Sum_probs=131.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1760 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1760 (1935)
+...|..-+.-.++.|++++|.+.|++++...|.+...+...+|++++.+ +.++ .+.|...|++.++..|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy--~~~~--y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY--KNAD--LPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--hcCC--HHHHHHHHHHHHHhCcCCCchH
Confidence 45566666777788899999999999999888877655555677776665 4563 488999999999998864
Q ss_pred HHHHHHHHHHHHcC---------------C---hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Q 000173 1761 KVHLALLGLYERTE---------------Q---NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~---------------~---~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~ 1822 (1935)
.+++.++..+...+ + ..+|.+.|++.+++||++.- ..+|+..+..+-..
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-------------a~~A~~rl~~l~~~ 173 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-------------TTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-------------HHHHHHHHHHHHHH
Confidence 55555554432221 1 34677899999999998755 34444333333222
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT---DLWSIYLDQEIRLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~---dlw~~ya~~e~k~g~~e~ar~lferal 1890 (1935)
+- .--+..|.++++.|.+.-|..-|+.++..+|... +.....+..+...|..+.|........
T Consensus 174 la-----~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LA-----KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH-----HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 21 1223678899999999999999999999999854 456666777888999999988766543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00022 Score=76.01 Aligned_cols=97 Identities=9% Similarity=-0.111 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
+..+.++..+.+.|++++|..+|+.++...+.+..-|+.++..+... ++++|...|.+|+...|.+ +..+...|+.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--p~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--PQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--chHHHHHHHHH
Confidence 55667777888999999999999999999999999999999999988 9999999999999999876 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 000173 1840 FKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~ 1859 (1935)
+..|+.+.|+..|+.++...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999876
|
|
| >TIGR02063 RNase_R ribonuclease R | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-05 Score=107.42 Aligned_cols=76 Identities=32% Similarity=0.649 Sum_probs=65.8
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCC
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1531 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~-----------~~~~~~~~~Gd~V~~~Il~id~~~ 1531 (1935)
+..-++|+++.|.|++|++||+||+|.+.+++||+|+|++++++. .+....|++||.|+|+|.++|.++
T Consensus 622 yl~~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~ 701 (709)
T TIGR02063 622 YMSEKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDT 701 (709)
T ss_pred hhhccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEeccc
Confidence 445578999999999999999999998656999999999986643 223467999999999999999999
Q ss_pred CeeEEec
Q 000173 1532 RRISLGM 1538 (1935)
Q Consensus 1532 ~ri~lsl 1538 (1935)
++|.|++
T Consensus 702 ~~I~~~l 708 (709)
T TIGR02063 702 GKIDFEL 708 (709)
T ss_pred CeEEEEE
Confidence 9999986
|
This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00021 Score=77.09 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=85.1
Q ss_pred HcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHH
Q 000173 1772 RTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e 1846 (1935)
..++...+.+.++.+.+.++.+ ...++.++..++.. ++++|...|+.++...|... ...+++.+|.+++..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4677777777888888888766 55667777777777 88888888888887664431 1246777788888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1847 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1847 ~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal 1890 (1935)
+|...++.. ...+-....|...++++.+.|+.+.|+..|++|+
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888888662 3333345567777888888888888888887764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0015 Score=80.48 Aligned_cols=194 Identities=12% Similarity=0.050 Sum_probs=105.3
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHH-HHHHHHH---HHHHcCCCCH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN-IWVAYFN---LENEYGNPPE 1743 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~-lW~ayl~---le~~~g~~~~ 1743 (1935)
.+.+...|..++..+ .+.....+.++.|+..+.++..+...+.|++.-. +.-+..+ |-.++.. .+...+ ..
T Consensus 240 f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~--~~ 314 (539)
T KOG0548|consen 240 FETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKRE--DY 314 (539)
T ss_pred HHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHH--hH
Confidence 667788899999888 8888899999999999999999999888886421 1111111 1122222 222334 34
Q ss_pred HHHHHHHHHHHhcCCCHHH-------------HHHH--------------HHHHHHcCChHHHHHHHHHHHHhcCCCHHH
Q 000173 1744 EAVVKVFQRALQYCDPKKV-------------HLAL--------------LGLYERTEQNKLADELLYKMIKKFKHSCKV 1796 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~~v-------------~~~l--------------~~i~~~~~~~~~A~el~~~~~k~~~~~~~v 1796 (1935)
+.+...|++++...-..++ +..+ ++-+-+.++|..|...|.+|+++.|++..+
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 7788888888755432111 1110 112233444444444444444444444444
Q ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 000173 1797 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1868 (1935)
Q Consensus 1797 w~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ 1868 (1935)
|.+.+.+|... .+..|.+-.+.+++..|.. +..|..-|..++...+++.|...|+.+++.+|++..+.-.
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~--~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNF--IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 44444444444 4444444444444444444 3444444444444444444444455544444444444333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=84.76 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=106.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000173 1768 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1768 ~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e 1846 (1935)
+=+.+.++|++|...|.+|++..|.++-.|.+.+..|.+. .++.|.+-.+.||..+|.+ .++|..++..++..|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--skay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--SKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--HHHHHHHHHHHHccCcHH
Confidence 3456778899999999999998899999999999999998 9999999999999998766 589999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCchhH
Q 000173 1847 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD---LIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1847 ~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e---~ar~lferal~~~~~pk~~ 1899 (1935)
+|..-|.++|..+|.+...|..+-..+.+.+... .+..-|+-+......|+-+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 9999999999999999888888777777766655 4555666655544444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00084 Score=71.62 Aligned_cols=141 Identities=14% Similarity=0.077 Sum_probs=122.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1750 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK-KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1750 ferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k-~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
..+.+...|...-.+.+++.....|++.+|...|++++. .|...+.+.+.+++..+.. ++..|...++......|...
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 334444456667888999999999999999999999886 5789999999999999999 99999999999999999887
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHh
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL----IRGLFERAIS 1891 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~----ar~lferal~ 1891 (1935)
.+.-...||..+-..|.++.|++-||.++..+|.- .....|+.|+.++|..++ .+.+++++..
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999984 667789999999996554 5567777665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00018 Score=74.16 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSI 1868 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~---~dlw~~ 1868 (1935)
++.|+..+..++.+ ++++|.+.|.+++...|.+.. ..++..+|..+++.|++++|..+|+.++..+|.. ..+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 46788899999999 999999999999999887532 4688999999999999999999999999999885 568999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1869 YLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1869 ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
++.++.+.|+.+.|...|++++. ..|...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK--RYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH--HCcCCh
Confidence 99999999999999999999998 555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.002 Score=91.27 Aligned_cols=264 Identities=11% Similarity=0.018 Sum_probs=176.8
Q ss_pred ccCCCCcHHHHHHHHHcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHHHc
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSS-----FVWIKYMAFMLSMADVEKARSIAERALQTINIREEN-EKLNIWVAYFNLENEY 1738 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~-----~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~-Ekl~lW~ayl~le~~~ 1738 (1935)
.++..++...+++++...|... ..+..++..+...|+++.|+..+++++......... .....+..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 4556777888888876444322 234555666778999999999999999643321110 1122334445566778
Q ss_pred CCCCHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHHH
Q 000173 1739 GNPPEEAVVKVFQRALQYCDP---------KKVHLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVWLRRVQRL 1804 (1935)
Q Consensus 1739 g~~~~e~a~~vferAl~~~~~---------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~-----~~~vw~~~~~~l 1804 (1935)
| +.+.|...+++++..... ..++..++.++...|++++|.+.+.+++..... ....+..++..+
T Consensus 545 G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 545 G--FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred C--CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 8 569999999999876321 134556677888889999999999998875421 233444566677
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCC-hHHH--HHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHK-HIKF--ISQ--TAILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEI 1874 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~-~~~~--~~~--~a~le~~~g~~e~Ar~ife~al~~~Pk~~d----lw~~ya~~e~ 1874 (1935)
... +++.|...+.+++...+... +... +.. .+..+...|+.+.|..++.......+.... .+..++..+.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 777 99999999999977543321 1111 111 123344578999999998887653322222 2567788888
Q ss_pred HcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1875 RLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1875 k~g~~e~ar~lferal~~----~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
..|+.++|..+|++++.. ......+ .....+.......|+.+.|...+.+|++..+
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a-~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLN-RNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 999999999999999872 1122222 2344455667789999999999999998764
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=89.62 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=89.3
Q ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000173 1797 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1875 (1935)
Q Consensus 1797 w~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k 1875 (1935)
+..-+..++.. ++++|.++|.+|+...|.+ ..+|..+|.+++..|++++|...|++++..+|.+..+|+.++.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~--~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN--AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 33445666677 9999999999999999987 58999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1876 LGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
.|+++.|...|++++. +.|...
T Consensus 83 lg~~~eA~~~~~~al~--l~P~~~ 104 (356)
T PLN03088 83 LEEYQTAKAALEKGAS--LAPGDS 104 (356)
T ss_pred hCCHHHHHHHHHHHHH--hCCCCH
Confidence 9999999999999999 555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0011 Score=75.83 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----H
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK----K 1761 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~----~ 1761 (1935)
...+...+..+++.|++++|...|++.+...|.+.-.....+|+++..+ ..++ .+.|...|++.++..|.. .
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y--~~~~--y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY--KQGD--YEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH--HTT---HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH--HcCC--HHHHHHHHHHHHHHCCCCcchhh
Confidence 4556666777788899999999999999888877665655666665544 5663 488888889888888764 4
Q ss_pred HHHHHHHHHHH-----------cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHH
Q 000173 1762 VHLALLGLYER-----------TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1762 v~~~l~~i~~~-----------~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
+++.++..+.. .....+|...|+..+++||++.- ..+|+..+..+-..+ ..
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y-------------~~~A~~~l~~l~~~l-----a~ 142 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY-------------AEEAKKRLAELRNRL-----AE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT-------------HHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH-------------HHHHHHHHHHHHHHH-----HH
Confidence 44444443322 23345778888888888887655 344444444333322 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQEIRLGDVDLIR 1883 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d---lw~~ya~~e~k~g~~e~ar 1883 (1935)
--+..|.++++.|.+..|..-|+.+++.+|.... .+...+..+.++|..+.+.
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2345688999999999999999999999999654 5677777777888777544
|
|
| >cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.7e-05 Score=75.43 Aligned_cols=75 Identities=19% Similarity=0.366 Sum_probs=64.4
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEe-------cCceeEEeeccccCccccc--CcccccCCCCEEEEEEEEEecCCCeeEE
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIE-------NTNLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~-------~~~v~Gl~h~sels~~~~~--~~~~~~~~Gd~V~~~Il~id~~~~ri~l 1536 (1935)
.++|++|-|+|+++....++|.|. +....|++|++++...+.+ ++.+.|++||.|+|+|++++ +.+.+.|
T Consensus 4 P~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~-~~~~~~L 82 (92)
T cd05791 4 PKVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLG-DASSYYL 82 (92)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcC-CCCCcEE
Confidence 489999999999999999999992 2368999999999887776 68899999999999999997 3466888
Q ss_pred ecccc
Q 000173 1537 GMKSS 1541 (1935)
Q Consensus 1537 slK~~ 1541 (1935)
|++..
T Consensus 83 st~~~ 87 (92)
T cd05791 83 STAEN 87 (92)
T ss_pred EecCC
Confidence 88753
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00023 Score=88.07 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1744 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
+.|.++|++..+..|. ++..++.+|...++..+|.++++++++..|.+..++...+.|++.. +++.|..+.++|...
T Consensus 186 ~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l 263 (395)
T PF09295_consen 186 DEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL 263 (395)
T ss_pred HHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 5555555555554443 3334455555555555555555555555555555555555555555 555555555555555
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSM 1851 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~i 1851 (1935)
.|.. ...|..+|+.|.+.|+++.|...
T Consensus 264 sP~~--f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 264 SPSE--FETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred Cchh--HHHHHHHHHHHHhcCCHHHHHHH
Confidence 5544 25555555555555555555543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK11642 exoribonuclease R; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=3e-05 Score=104.42 Aligned_cols=75 Identities=31% Similarity=0.603 Sum_probs=65.2
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc--c---------CcccccCCCCEEEEEEEEEecCCCe
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--D---------NIETIYRAGEKVKVKILKVDKEKRR 1533 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~--~---------~~~~~~~~Gd~V~~~Il~id~~~~r 1533 (1935)
.-++|+++.|+|++|++||+||+|.+.+++||+|++++.+++. . +....|++||.|+|+|+++|.++++
T Consensus 640 ~~~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rk 719 (813)
T PRK11642 640 LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERK 719 (813)
T ss_pred hccCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCe
Confidence 3379999999999999999999998756999999999987632 1 2346799999999999999999999
Q ss_pred eEEecc
Q 000173 1534 ISLGMK 1539 (1935)
Q Consensus 1534 i~lslK 1539 (1935)
|.|++-
T Consensus 720 I~f~l~ 725 (813)
T PRK11642 720 IDFSLI 725 (813)
T ss_pred EEEEEe
Confidence 999973
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00079 Score=87.15 Aligned_cols=182 Identities=14% Similarity=0.033 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHH
Q 000173 1701 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLA 1779 (1935)
Q Consensus 1701 e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A 1779 (1935)
+...|...+-||++..++- ...|.-+..++.... +...|++.|.+|....+.. ..|.+.++.|......+.|
T Consensus 473 ~~~~al~ali~alrld~~~-----apaf~~LG~iYrd~~--Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSL-----APAFAFLGQIYRDSD--DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred hHHHHHHHHHHHHhcccch-----hHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHH
Confidence 3777778888888644321 245666666666666 4577888888888888776 8888888888888888888
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1780 DELLYKMIKKFK--HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1780 ~el~~~~~k~~~--~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al 1856 (1935)
.++.-++-.+-+ ....-|...+-++++. +...|..-|+.|+...|.+ ...|..+++.|...|.+..|...|.++.
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD--~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD--YNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh--HHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 888555544432 2345577777777777 8888888888888888877 5888888888888888888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1857 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1857 ~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
...|.+.-.-+.-+-++.-.|.+..+.+.++..+.
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88888777777777788888888888877777665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00033 Score=82.79 Aligned_cols=103 Identities=12% Similarity=0.190 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC-ChHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-KHIKFISQTA 1836 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~-~~~~~~~~~a 1836 (1935)
.|.....++...++|++|...|+..++.||++ +.+|+.++..++.. ++++|...|+++++.+|.+ ....+|...|
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 33333445566788899999999999888877 57888888888888 8889998999998888875 3357888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
..+...|+++.|+.+|+++++.+|+...
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 8888888899999999988888888754
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0011 Score=76.54 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=92.8
Q ss_pred HHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 000173 1801 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1879 (1935)
Q Consensus 1801 ~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~ 1879 (1935)
+.-+++. +|++|...|.+||+..|.+. -+|.+.|+.|.+.|.++.|.+-.+.+|+.+|.....|..+...+..+|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 4456666 99999999999999999984 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000173 1880 DLIRGLFERAISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1880 e~ar~lferal~~~~~pk~~k~l~~~yl~~ 1909 (1935)
+.|...|.+||. +.|.+. .|+.=|.+
T Consensus 166 ~~A~~aykKaLe--ldP~Ne--~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNE--SYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhc--cCCCcH--HHHHHHHH
Confidence 999999999999 888887 45554544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00054 Score=73.01 Aligned_cols=102 Identities=10% Similarity=-0.109 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH
Q 000173 1723 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRV 1801 (1935)
Q Consensus 1723 Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~ 1801 (1935)
+.++.-.+|.....+.| ..+.|..+|+-++.+.|.+ .-|+.|+.++...+++.+|.+.|.++....++++..+.+.+
T Consensus 33 ~~l~~lY~~A~~ly~~G--~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVK--EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 34667888888889999 5599999999999999986 99999999999999999999999999999999999999999
Q ss_pred HHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1802 QRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1802 ~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
.+++.. +.+.|++.|+.|+..+...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 999999 9999999999999988444
|
|
| >TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.1e-05 Score=100.45 Aligned_cols=74 Identities=31% Similarity=0.595 Sum_probs=64.4
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCCCe
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEKRR 1533 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~-----------~~~~~~~~~Gd~V~~~Il~id~~~~r 1533 (1935)
.-++|+++.|+|+++++||+||+|.+.+++||+|++++.+++. ++....|++||.|+|+|.++|.++++
T Consensus 569 ~~~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~ 648 (654)
T TIGR00358 569 LDKVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRS 648 (654)
T ss_pred hhCCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCe
Confidence 4468999999999999999999998558999999999987641 22346899999999999999999999
Q ss_pred eEEec
Q 000173 1534 ISLGM 1538 (1935)
Q Consensus 1534 i~lsl 1538 (1935)
|.+++
T Consensus 649 I~f~l 653 (654)
T TIGR00358 649 IIFEL 653 (654)
T ss_pred EEEEE
Confidence 99875
|
This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases. |
| >cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=97.75 E-value=8e-05 Score=73.06 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=66.2
Q ss_pred CCCCCEEEEEEEEEeeceEEEEe--------CCCcEEEEECccCCCcccC--CccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIML--------SRKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l--------~~~v~g~V~~s~lsd~~~~--~~~~~f~~G~~V~~kVl~vd~~~~ri~l 1445 (1935)
.++|++|-|+|++++...++|++ .....|.+|++++...+.. ++.+.|++||.|.|+|++++. .+.+.|
T Consensus 4 P~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~~-~~~~~L 82 (92)
T cd05791 4 PKVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLGD-ASSYYL 82 (92)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcCC-CCCcEE
Confidence 37899999999999999999999 8888999999999988776 788999999999999999984 567999
Q ss_pred EEecC
Q 000173 1446 TLKTS 1450 (1935)
Q Consensus 1446 Slk~~ 1450 (1935)
|++..
T Consensus 83 st~~~ 87 (92)
T cd05791 83 STAEN 87 (92)
T ss_pred EecCC
Confidence 98764
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >TIGR01953 NusA transcription termination factor NusA | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.1e-05 Score=90.18 Aligned_cols=122 Identities=19% Similarity=0.374 Sum_probs=87.1
Q ss_pred ccccccCCCeEeeEEEeecCCCeEEEeccchhcch---h--ccCCccccccCCCCEEEEEEEEEecCe-EEEEECCCeEE
Q 000173 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS---A--QQLPSDASHIHPNSVVHGYVCNIIETG-CFVRFLGRLTG 787 (1935)
Q Consensus 714 ~~~~~k~G~~l~~vl~~d~~~~~i~ls~K~~l~~~---~--~~~~~~~~~~~~G~~~~G~V~~i~~~G-~fV~f~~gl~G 787 (1935)
+...+++||.++..+..+.-++....++|+.+... . +.+...|.+ +.|+.++|+|.++.+.| +||.+ |++.|
T Consensus 80 ~d~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea 157 (341)
T TIGR01953 80 IDPDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEG 157 (341)
T ss_pred hccccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEE
Confidence 34567899999854443333444556666655222 1 123333333 58999999999999988 69999 79999
Q ss_pred EeeCCccCcccccCcccCccCCCEEEEEEEEeeCCC--CeEEEeecccccCCCCchhhHHHHHHH
Q 000173 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSLKQSCCSSTDASFMQEHFLLE 850 (1935)
Q Consensus 788 lv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~--~rl~LSlk~~~~~~~d~~~i~~~l~~~ 850 (1935)
|+|++++. |.+.|++|+.++|.|++++.+. ..+.||.+. +.|+..+|..+
T Consensus 158 ~LP~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~-------~~~v~~Lfe~E 209 (341)
T TIGR01953 158 ILPKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTH-------PEFVKELLKLE 209 (341)
T ss_pred EecHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCc-------HHHHHHHHHHh
Confidence 99999886 4567999999999999999654 568888754 45566666643
|
This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids. |
| >TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=81.77 Aligned_cols=76 Identities=22% Similarity=0.389 Sum_probs=64.9
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-C----------ccccCCCCcEEEEEEEEEe-----CCCC
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-S----------PEKEFPIGKLVAGRVLSVE-----PLSK 1441 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~-~----------~~~~f~~G~~V~~kVl~vd-----~~~~ 1441 (1935)
+|+++.|.|++++++|+||+++ .++|++|.+++.+++.. | ....|+.|+.|+++|++++ ++..
T Consensus 81 ~gEvv~G~V~~v~~~GifV~lg-~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~~~ 159 (179)
T TIGR00448 81 LGEIVEGEVIEIVEFGAFVSLG-PFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRPEGS 159 (179)
T ss_pred CCCEEEEEEEEEEeeEEEEEeC-CceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCCCcc
Confidence 6999999999999999999997 49999999999876532 2 3467999999999999998 6678
Q ss_pred EEEEEEecCcccc
Q 000173 1442 RVEVTLKTSDSRT 1454 (1935)
Q Consensus 1442 ri~lSlk~~~~~~ 1454 (1935)
+|.+|+|+.-..+
T Consensus 160 ~I~lt~k~~~LG~ 172 (179)
T TIGR00448 160 KIGLTMRQPLLGK 172 (179)
T ss_pred eEEEEeccCcCCc
Confidence 9999999865543
|
This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE. |
| >PRK08563 DNA-directed RNA polymerase subunit E'; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=82.49 Aligned_cols=78 Identities=24% Similarity=0.527 Sum_probs=65.7
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEecCCC--
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKR-- 1532 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~V~~~Il~id~~~~-- 1532 (1935)
..+|+++.|+|+++.++|+||+|+ .++|++|.+++.+++.. +....|+.||.|+++|++++.+.+
T Consensus 79 P~~GEVv~g~V~~v~~~Gi~V~lg--~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~ 156 (187)
T PRK08563 79 PELQEVVEGEVVEVVEFGAFVRIG--PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRP 156 (187)
T ss_pred ccCCCEEEEEEEEEEccEEEEEEe--CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 457999999999999999999997 49999999999876432 345678999999999999997653
Q ss_pred ---eeEEeccccccCC
Q 000173 1533 ---RISLGMKSSYFKN 1545 (1935)
Q Consensus 1533 ---ri~lslK~~~~~~ 1545 (1935)
+|.+|++..+.+.
T Consensus 157 ~~~~I~ls~~~~~LG~ 172 (187)
T PRK08563 157 RGSKIGLTMRQPGLGK 172 (187)
T ss_pred CCCEEEEEecCCCCCc
Confidence 8999999877643
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00042 Score=76.84 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1776 NKLADELLYKMIKKFK--HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSM 1851 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~--~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~i 1851 (1935)
+..+...+.+.++..+ .....|+.++..+... ++++|...|++|+...|... ...+|..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555544332 3366778888877777 88888888888887765532 235788888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHh
Q 000173 1852 FEGILSEYPKRTDLWSIYLDQEI-------RLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1852 fe~al~~~Pk~~dlw~~ya~~e~-------k~g~~e~ar~lferal~ 1891 (1935)
|++++...|.....|...+.++. ..|+++.|...|++++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 88888888888777877777777 55666666666666554
|
|
| >KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=3e-05 Score=93.64 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=68.9
Q ss_pred ccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 756 ~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
..++..|.+++++|+++.++|+||+|+++..||+|.|+++-+.+.+|++.+.+||.|.++.+..|+..+..+++-+
T Consensus 663 ~~~l~~g~vy~~tIt~~rd~G~~V~l~p~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~~~ls~ra 738 (760)
T KOG1067|consen 663 VQDLEFGGVYTATITEIRDTGVMVELYPMQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGGIMLSSRA 738 (760)
T ss_pred ccceEeeeEEEEEEeeecccceEEEecCCchhhccchhcccccccChHHHHhhcceeEEEEEeecCccceeehhhh
Confidence 3456779999999999999999999999999999999999999999999999999999999999987776666543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0031 Score=79.72 Aligned_cols=226 Identities=20% Similarity=0.163 Sum_probs=148.9
Q ss_pred CCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000173 1684 NSSFVWIKYMAFMLSMAD----------VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1753 (1935)
Q Consensus 1684 ~s~~lW~~y~~~~l~~~e----------~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferA 1753 (1935)
.|-..|-+++.......+ +..||.+ ||++..-... |-...-++ -|..++| -.|+|..+|++.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga--RAlR~a~q~~--~e~eakvA--vLAieLg--MlEeA~~lYr~c 826 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA--RALRRAQQNG--EEDEAKVA--VLAIELG--MLEEALILYRQC 826 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH--HHHHHHHhCC--cchhhHHH--HHHHHHh--hHHHHHHHHHHH
Confidence 355789988888765544 4444432 4443221111 11223334 4455667 459999999988
Q ss_pred HhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHH----------HHHh
Q 000173 1754 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR----------ALLS 1822 (1935)
Q Consensus 1754 l~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~r----------alk~ 1822 (1935)
-.+ --|-.+|...|..++|.++-+.--.+ .-...|++|+.++... +.+.|.++|++ +|+-
T Consensus 827 kR~-------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 827 KRY-------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred HHH-------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence 543 23344777788888888877654433 3567899999998888 99999998886 3554
Q ss_pred CCC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------HhCCCCHHHHHHHHHHH
Q 000173 1823 LPR--------HKHIKFISQTAILEFKNGVADRGRSMFEGIL---------------------SEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1823 ~p~--------~~~~~~~~~~a~le~~~g~~e~Ar~ife~al---------------------~~~Pk~~dlw~~ya~~e 1873 (1935)
+|. .....+|.-||+++...|+.+.|...|+.|- .....+....+.++++|
T Consensus 898 ~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 898 YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY 977 (1416)
T ss_pred ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh
Confidence 543 1235899999999999999999999999882 22334455788899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC-----CchhH-HHHHHHHH------------HHHHHcCCHHHHHHHHHHH
Q 000173 1874 IRLGDVDLIRGLFERAISLSL-----PPKKM-KFLFKKYL------------EYEKSVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1874 ~k~g~~e~ar~lferal~~~~-----~pk~~-k~l~~~yl------------~~E~~~G~~e~a~~v~~rA 1926 (1935)
...|+..+|...|-||-..+. ....+ +.+|+..+ .||+.-|+.+.|--+|.||
T Consensus 978 En~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence 999999999998888754110 01111 13454433 3455445888887777665
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0085 Score=74.52 Aligned_cols=242 Identities=12% Similarity=0.153 Sum_probs=149.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhh-HHHH----------H---------------HHHHHHH
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE-KLNI----------W---------------VAYFNLE 1735 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~E-kl~l----------W---------------~ayl~le 1735 (1935)
++.+..+..-+++.+.+++++++|..+|+..++......|.+ +.|+ | +..+-.+
T Consensus 106 ~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~ 185 (652)
T KOG2376|consen 106 DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACIL 185 (652)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHH
Confidence 556666777788999999999999999998876433222222 1211 1 1111222
Q ss_pred HHcCCCCHHHHHHHHHHHHhcC-------CC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-----
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYC-------DP---------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC----- 1794 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~-------~~---------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~----- 1794 (1935)
...|+ ...|.++++.|+.++ +. ..+...++-++...|+.++|.++|...++..+...
T Consensus 186 i~~gk--y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av 263 (652)
T KOG2376|consen 186 IENGK--YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAV 263 (652)
T ss_pred Hhccc--HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHH
Confidence 34453 378888888885443 11 16778888899999999999999999887764211
Q ss_pred ------------------------HHHHHHHHHHHH--------------------c-CHHHHHHHHHHHHHhCCCCC--
Q 000173 1795 ------------------------KVWLRRVQRLLK--------------------Q-QQEGVQAVVQRALLSLPRHK-- 1827 (1935)
Q Consensus 1795 ------------------------~vw~~~~~~l~~--------------------~-~~e~A~~ll~ralk~~p~~~-- 1827 (1935)
.....++++.+. . ..+.+++ ....+|...
T Consensus 264 ~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~----~~a~lp~~~p~ 339 (652)
T KOG2376|consen 264 AVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE----LSASLPGMSPE 339 (652)
T ss_pred HhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHhCCccCch
Confidence 011111111111 1 2222222 222333321
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCch
Q 000173 1828 -HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFE--------RAISLSLPPK 1897 (1935)
Q Consensus 1828 -~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~-~dlw~~ya~~e~k~g~~e~ar~lfe--------ral~~~~~pk 1897 (1935)
.+.+...-+...... .+..|..++......+|.+ ..+....+++.+..|+++.|..++. ........|.
T Consensus 340 ~~~~~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREK-KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 123333333333333 6788888888888889987 6678889999999999999999998 3333222221
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000173 1898 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1934 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~ 1934 (1935)
+--....+..+-++...+..++..|+.|+...+
T Consensus 419 ----~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 419 ----TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred ----HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 222223344556677779999999999998653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0001 Score=67.45 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000173 1834 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1834 ~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk 1897 (1935)
..|..+++.|++++|+.+|+++++.+|.+.++|..++.++...|++++|+.+|++++. ..|.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 4677888888888888888888888888888888888888888888888888888887 4443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0009 Score=74.47 Aligned_cols=83 Identities=14% Similarity=0.104 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1796 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1796 vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
.|+.++..+... ++++|...|++++...|... ...+|..+|.+++..|++++|...|++++...|.+...|..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444444 55555555555554433321 1245555555555555555555555555555555555555555555
Q ss_pred HHcCC
Q 000173 1874 IRLGD 1878 (1935)
Q Consensus 1874 ~k~g~ 1878 (1935)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00018 Score=66.65 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAIS 1891 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g-~~e~ar~lferal~ 1891 (1935)
.+|...|..++..|++++|...|+++++.+|++..+|..++..+...| ++++|...|+++++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555445555555555554 34455555555444
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00076 Score=81.40 Aligned_cols=164 Identities=15% Similarity=0.115 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----CH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD----PK---KVHLALLGLYERTEQNKLADELLYKMIKKFK------ 1791 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~----~~---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------ 1791 (1935)
..++..-++.+...+++ +.|-+.|.+|..... .. +.|...+.+|.+. ++++|.+.|++++..|.
T Consensus 35 a~~y~~Aa~~fk~~~~~--~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDW--EKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence 35666666666677755 777888888765532 11 6677777777666 77788888888877662
Q ss_pred CCHHHHHHHHHHHHHc--CHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 000173 1792 HSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK---- 1861 (1935)
Q Consensus 1792 ~~~~vw~~~~~~l~~~--~~e~A~~ll~ralk~~p~~~----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk---- 1861 (1935)
....++..++..+... ++++|.+.|++|+..+.... ...++.+.|.++.+.|++++|..+|+++....-.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 2245566777777666 77888888888877653322 1367777777877888888888888877765422
Q ss_pred CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1862 RT---DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1862 ~~---dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+. +.+...+-.++..||...|+..|++...
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22 2344445556667788888888888776
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.01 Score=84.18 Aligned_cols=237 Identities=13% Similarity=0.095 Sum_probs=161.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----H---HHHHH
Q 000173 1693 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----K---KVHLA 1765 (1935)
Q Consensus 1693 ~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~----~---~v~~~ 1765 (1935)
+..+...|+++.|+..+++|+...+..........+..+.......| +.+.|...|++++..... . ..+..
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 34456889999999999999975443221112233344455566788 559999999999976432 1 45566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC---ChHHHHH
Q 000173 1766 LLGLYERTEQNKLADELLYKMIKKFKH--------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH---KHIKFIS 1833 (1935)
Q Consensus 1766 l~~i~~~~~~~~~A~el~~~~~k~~~~--------~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~---~~~~~~~ 1833 (1935)
++.++...|+++.|.+.+++++..... ...++..++..+... ++++|+..+++++...... .....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 778899999999999999998875421 122344566777777 9999999999998864321 2345666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcCCCchh-HHHHHHH
Q 000173 1834 QTAILEFKNGVADRGRSMFEGILSEYPKRT--DLWSI-----YLDQEIRLGDVDLIRGLFERAISLSLPPKK-MKFLFKK 1905 (1935)
Q Consensus 1834 ~~a~le~~~g~~e~Ar~ife~al~~~Pk~~--dlw~~-----ya~~e~k~g~~e~ar~lferal~~~~~pk~-~k~l~~~ 1905 (1935)
..|.++...|+++.|+..+++++...+... ..|.. .+..+...|+.+.|+.++.+.......... ....+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 788899999999999999999987644321 11211 123334579999999998886541111110 0012344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
+.......|+.+.|...+++|++..+
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~ 722 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENAR 722 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45556678999999999999988754
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=71.28 Aligned_cols=134 Identities=15% Similarity=0.113 Sum_probs=105.7
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1775 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMF 1852 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~if 1852 (1935)
+.++|...|..+... + .. +...+...++...+..|... -...++..|..++..|++++|...|
T Consensus 7 ~~~~a~~~y~~~~~~--------------~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l 71 (145)
T PF09976_consen 7 QAEQASALYEQALQA--------------L-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAAL 71 (145)
T ss_pred HHHHHHHHHHHHHHH--------------H-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345566666666542 1 34 78889999999999998873 2467888899999999999999999
Q ss_pred HHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1853 EGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1853 e~al~~~Pk~---~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
+.++...|+. ..++..++.+++..|+++.|...++.+.. .+ -.. ..|....+.....|+.+.|+..|++|+
T Consensus 72 ~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~--~~-~~~-~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 72 EKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD--EA-FKA-LAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC--cc-hHH-HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999988664 33688889999999999999999977433 22 223 467777788999999999999999985
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=81.14 Aligned_cols=111 Identities=10% Similarity=0.077 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
...+|.++-.+|+...|.+. .+....|.+..-.++++.|..+|++++..+|+..++|+.++.+++-.|+.++|+..++
T Consensus 319 ~~~~a~~~A~rAveld~~Da--~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDG--KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 57888899999999988874 6666677766667789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHH-HHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1888 RAISLSLPPKKMK-FLFKKYLEYEKSVGEEERIEYVK 1923 (1935)
Q Consensus 1888 ral~~~~~pk~~k-~l~~~yl~~E~~~G~~e~a~~v~ 1923 (1935)
+++. +.|.+++ .+.+.|++++..++ .+.+..+|
T Consensus 397 ~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 397 KSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 9998 6666543 56777886665443 33444444
|
|
| >cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=97.65 E-value=5e-05 Score=65.51 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=54.1
Q ss_pred cceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCC-CCCCCcccccCCCeEEEEEeccC
Q 000173 971 HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 1029 (1935)
Q Consensus 971 G~~v~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~a~V~~~~ 1029 (1935)
++.++|.|+++.++|++||+.+.+.++++.-.+|+| ++++.++++++||++.+.|....
T Consensus 1 ~S~htA~VQh~~kdfAvvSL~~t~~L~a~p~~sHLNdtfrf~seklkvG~~l~v~lk~~~ 60 (69)
T cd05701 1 DSRHTAIVQHADKDFAIVSLATTGDLAAFPTRSHLNDTFRFDSEKLSVGQCLDVTLKDPN 60 (69)
T ss_pred CCccchhhhhhhhceEEEEeeccccEEEEEchhhccccccccceeeeccceEEEEEecCc
Confidence 356789999999999999999999999999999999 88889999999999999988764
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.2e-05 Score=86.06 Aligned_cols=155 Identities=19% Similarity=0.260 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHH
Q 000173 1701 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1780 (1935)
Q Consensus 1701 e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~ 1780 (1935)
.+-+.|..||--|.. -.-++|=++.|++.|..... -+|..+ +|...... +.+---++ ..+..
T Consensus 32 ~IvktRr~fE~rL~r-----r~~klnDf~~YI~yE~nlek---lRaKR~-Kr~~v~~K--------~s~sD~si-pqk~~ 93 (435)
T COG5191 32 RIVKTRRKFELRLQR-----REKKLNDFMRYIKYECNLEK---LRAKRV-KRKKVGKK--------ASFSDMSI-PQKKI 93 (435)
T ss_pred HHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHhhHHH---HHHHHH-HHHHhccc--------ccchhccc-cceee
Confidence 344667777766643 12346778888888766552 122221 22221100 00000011 11112
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 000173 1781 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1781 el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~-~~g~~e~Ar~ife~al~~ 1858 (1935)
=.|.++..+|++.+++|..|+.+.... .+.+...+|..+|+.+|.+ +++|...+.+++ .+++.+.+|++|.++|+.
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n--vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN--VDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 235566778899999999999988888 9999999999999999998 599999888876 788999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 000173 1859 YPKRTDLWSIYLDQEIR 1875 (1935)
Q Consensus 1859 ~Pk~~dlw~~ya~~e~k 1875 (1935)
+|..+-+|..|..||..
T Consensus 172 N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 172 NSRSPRIWIEYFRMELM 188 (435)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 99999999999999874
|
|
| >TIGR01953 NusA transcription termination factor NusA | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.4e-05 Score=90.01 Aligned_cols=108 Identities=17% Similarity=0.346 Sum_probs=79.4
Q ss_pred CCCCCCCEEEEEEEEEeCCe-EEEEEeccccc----c-hhhHHhhhhhcCCCcEEEEEEEEEecce-EEEEEcCCeEEEe
Q 000173 541 KKFKVGAELVFRVLGVKSKR-ITVTHKKTLVK----S-KLAILSSYAEATDRLITHGWITKIEKHG-CFVRFYNGVQGFA 613 (1935)
Q Consensus 541 ~~fkvG~~v~~rVL~v~~~~-i~ltlK~~l~~----~-~~~~~~~~~~~~~G~~~~g~V~~i~~~G-~~V~~~~~v~g~v 613 (1935)
..+++|+.++..+-.-+-+| ..-+.|+.+.. . +..++..|.+ +.|+++.|+|.++.+.| +||++ |++.||+
T Consensus 82 ~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea~L 159 (341)
T TIGR01953 82 PDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEGIL 159 (341)
T ss_pred cccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEEEe
Confidence 35899999998774433233 33334443311 1 1233445544 68999999999999988 69999 7999999
Q ss_pred cCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCC--CEEEEEEee
Q 000173 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS--RRINLSFMM 656 (1935)
Q Consensus 614 p~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~--~ri~lS~k~ 656 (1935)
|.++.. |.+.|++|+.++|.|++++... ..+.||.+.
T Consensus 160 P~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~ 198 (341)
T TIGR01953 160 PKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTH 198 (341)
T ss_pred cHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCc
Confidence 999996 4467999999999999999554 579999864
|
This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids. |
| >KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.1e-05 Score=91.77 Aligned_cols=77 Identities=19% Similarity=0.415 Sum_probs=69.5
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..++..|-+++++|+.+.++|+||+|.+ ...||||+|+|+.+++..+++.+.+||.+.++.+..|+ .+.+.++-|+.
T Consensus 663 ~~~l~~g~vy~~tIt~~rd~G~~V~l~p-~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~-~g~~~ls~ral 739 (760)
T KOG1067|consen 663 VQDLEFGGVYTATITEIRDTGVMVELYP-MQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDP-RGGIMLSSRAL 739 (760)
T ss_pred ccceEeeeEEEEEEeeecccceEEEecC-CchhhccchhcccccccChHHHHhhcceeEEEEEeecC-ccceeehhhhh
Confidence 4588999999999999999999999998 89999999999999999999999999999999999996 55566665654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0007 Score=80.02 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHH-HHc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 000173 1793 SCKVWLRRVQRL-LKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTDLW 1866 (1935)
Q Consensus 1793 ~~~vw~~~~~~l-~~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk---~~dlw 1866 (1935)
....|+..+..+ +.. ++++|...|+..++.+|.... ..+++.+|++++..|+++.|...|++++..+|+ ..+.|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457888888876 556 999999999999999999753 579999999999999999999999999999887 57899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000173 1867 SIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1867 ~~ya~~e~k~g~~e~ar~lferal~~~~~pk 1897 (1935)
...+..+...|+.+.|+.+|++++. .+|+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~--~yP~ 249 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK--KYPG 249 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 9999999999999999999999998 4444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0011 Score=82.38 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
-+-..++.++...++++.|.++|+++.+..| .++..++..++.. +..+|.+++.++++..|.. ..++...|+++
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 3344456677778899999999999998764 5778889988888 8899999999999999877 68999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1889 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfera 1889 (1935)
.+.++++.|..+.++++...|.....|..++..|++.|+++.|...++.+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998777643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.027 Score=70.29 Aligned_cols=247 Identities=15% Similarity=0.144 Sum_probs=155.8
Q ss_pred HcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hcccc----chh-hHH-HHHHHHHHHHHHcCCCCHHHHHH
Q 000173 1680 RSSPN-SSFVWIKYMAFMLSMADVEKARSIAERALQ----TINIR----EEN-EKL-NIWVAYFNLENEYGNPPEEAVVK 1748 (1935)
Q Consensus 1680 ~~~P~-s~~lW~~y~~~~l~~~e~dkAr~v~erAl~----~i~~~----ee~-Ekl-~lW~ayl~le~~~g~~~~e~a~~ 1748 (1935)
...|. +.++..+.+-.++..|.+++|.++++.|++ ++.-. ++. +.+ .+-++++......| ..++|..
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G--qt~ea~~ 245 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG--QTAEASS 245 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc--chHHHHH
Confidence 33454 677888888889999999999999999954 22111 111 112 35566677777889 4589999
Q ss_pred HHHHHHhcCCCHHHHHH------------------------------HHH--------------------HHHHcCChHH
Q 000173 1749 VFQRALQYCDPKKVHLA------------------------------LLG--------------------LYERTEQNKL 1778 (1935)
Q Consensus 1749 vferAl~~~~~~~v~~~------------------------------l~~--------------------i~~~~~~~~~ 1778 (1935)
+|...++.++...-..+ ++. +..-.++.+.
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999987743211111 111 1112222333
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1779 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1857 (1935)
Q Consensus 1779 A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~ 1857 (1935)
++++..+.-..+|...---+.......+. .+..|.+++......+|.+. ..+....||+.+.+|+++.|..+++..+.
T Consensus 326 ~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s-~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 326 VRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS-KVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 33322222222211111111111111222 57788888888888887763 57888899999999999999999995542
Q ss_pred hC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1858 EY----PK---RTDLWSIYLDQEIRLGDVDLIRGLFERAISL---SLPP-KKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1858 ~~----Pk---~~dlw~~ya~~e~k~g~~e~ar~lferal~~---~~~p-k~~k~l~~~yl~~E~~~G~~e~a~~v~~rA 1926 (1935)
.. ++ ...+-.....++.+-++.+-|..++..|+.- ..+. .....+|.....|+.++|+.+++..+++.-
T Consensus 405 ~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 405 SWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 21 11 2234555566778888888899999999861 1111 223367888999999999999999999887
Q ss_pred HHH
Q 000173 1927 MEY 1929 (1935)
Q Consensus 1927 le~ 1929 (1935)
++|
T Consensus 485 ~k~ 487 (652)
T KOG2376|consen 485 VKF 487 (652)
T ss_pred HHh
Confidence 764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0016 Score=72.50 Aligned_cols=94 Identities=11% Similarity=-0.049 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~---~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
..|+.++..|...+++++|...|+++++..++ ...+|+.++..+... ++++|...|++++...|.. ...+..+|
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ--PSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHH
Confidence 55677777777888888888888888766543 246777888888777 8888888888888877765 47777778
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 000173 1837 ILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al 1856 (1935)
.++...|+...+...++.++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~ 133 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE 133 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH
Confidence 87777777555554444443
|
|
| >TIGR02063 RNase_R ribonuclease R | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=96.82 Aligned_cols=72 Identities=28% Similarity=0.405 Sum_probs=64.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCccc-----------CCccccCCCCcEEEEEEEEEeCCCCEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYV-----------ESPEKEFPIGKLVAGRVLSVEPLSKRV 1443 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~-~v~g~V~~s~lsd~~~-----------~~~~~~f~~G~~V~~kVl~vd~~~~ri 1443 (1935)
-++|+++.|.|++|+++|+||.|.+ +++|+||+++|+++|. .+....|++||.|+++|+++|..+++|
T Consensus 625 ~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~~~I 704 (709)
T TIGR02063 625 EKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDTGKI 704 (709)
T ss_pred ccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEecccCeE
Confidence 4689999999999999999999987 7999999999997642 234567999999999999999999999
Q ss_pred EEEE
Q 000173 1444 EVTL 1447 (1935)
Q Consensus 1444 ~lSl 1447 (1935)
.+++
T Consensus 705 ~~~l 708 (709)
T TIGR02063 705 DFEL 708 (709)
T ss_pred EEEE
Confidence 9986
|
This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. |
| >PRK12327 nusA transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00012 Score=89.25 Aligned_cols=106 Identities=16% Similarity=0.296 Sum_probs=78.3
Q ss_pred CCCCCCEEEEEEEEEe-CCeEEEEEecccccchh-----hHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecC
Q 000173 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v~-~~~i~ltlK~~l~~~~~-----~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~ 615 (1935)
..++|+.++..+-..+ ++....+.|+.+...-. .++..|.+ +.|+++.|+|.++..+|+||++ |++.||+|.
T Consensus 86 ~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~-k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP~ 163 (362)
T PRK12327 86 AYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSE-REGDIVTGVVQRRDNRFVYVNL-GKIEAVLPP 163 (362)
T ss_pred cccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEEEEEEeCCcEEEEe-CCeEEEecH
Confidence 5889999998775442 33334444444443211 22333322 6899999999999999999999 679999999
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCC--EEEEEEe
Q 000173 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFM 655 (1935)
Q Consensus 616 se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~--ri~lS~k 655 (1935)
+++. |.+.|++|+.++|.|++++.+.+ .+.||..
T Consensus 164 ~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSRt 199 (362)
T PRK12327 164 AEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSRT 199 (362)
T ss_pred HHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEeC
Confidence 8884 45789999999999999996654 5788764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0029 Score=82.01 Aligned_cols=98 Identities=10% Similarity=0.065 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
...+.+.+++++..........++..+|......|++++|...|++++...| +...|..++.++...|+.++|...|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455555566555422222246677777777777888888888888888888 467788888888888888888888888
Q ss_pred HHhcCCCchhHHHHHHHHHHH
Q 000173 1889 AISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1889 al~~~~~pk~~k~l~~~yl~~ 1909 (1935)
|+. +.|.....+|-.=+-|
T Consensus 479 A~~--L~P~~pt~~~~~~~~f 497 (517)
T PRK10153 479 AFN--LRPGENTLYWIENLVF 497 (517)
T ss_pred HHh--cCCCCchHHHHHhccc
Confidence 887 5554433344333334
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.001 Score=80.35 Aligned_cols=173 Identities=14% Similarity=0.162 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC---CC-H
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTIN-IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC---DP-K 1760 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~-~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~---~~-~ 1760 (1935)
..++..-+..+...+++++|.+.|.+|....- .....+-.+.|..-.+++... + .+.|...|++|+... .. .
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~--~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-D--PDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-C--HHHHHHHHHHHHHHHHhcCcHH
Confidence 45666667777888999999999999986322 222223335555555554444 3 488999999999763 22 1
Q ss_pred ---HHHHHHHHHHHHc-CChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC--
Q 000173 1761 ---KVHLALLGLYERT-EQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-- 1827 (1935)
Q Consensus 1761 ---~v~~~l~~i~~~~-~~~~~A~el~~~~~k~~~------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-- 1827 (1935)
..+..++.+|+.. +++++|.+.|++++..|. ....++..++.++.+. ++++|.++|++.....-...
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 8899999999998 999999999999999884 2256678899999999 99999999999988653321
Q ss_pred --hH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1828 --HI-KFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1828 --~~-~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
.+ ..+...+-+++..||+..|+..|++....+|.
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 12 35566666778999999999999999988875
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.041 Score=65.28 Aligned_cols=219 Identities=17% Similarity=0.155 Sum_probs=124.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcC
Q 000173 1696 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTE 1774 (1935)
Q Consensus 1696 ~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~ 1774 (1935)
-+-.|+++.||.-|+-++.. | |.--+-+-.-|+.- .+.| ..+.|+...++|-...|.. =.|.+.+.-.+..|
T Consensus 130 al~eG~~~~Ar~kfeAMl~d-P---EtRllGLRgLyleA-qr~G--areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLDD-P---ETRLLGLRGLYLEA-QRLG--AREAARHYAERAAEKAPQLPWAARATLEARCAAG 202 (531)
T ss_pred HHhcCchHHHHHHHHHHhcC-h---HHHHHhHHHHHHHH-Hhcc--cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC
Confidence 34556666666666666632 2 11112222222222 3455 3366666666666666553 45555555556666
Q ss_pred ChHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHH-c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000173 1775 QNKLADELLYKMIKKFKHSC------KVWLRRVQRLLK-Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~~~~~~------~vw~~~~~~l~~-~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e 1846 (1935)
+.+.|..+........--.. ..-+.-+..... . +...|+..-..++|..|.- +..-...|..+|+.|+.-
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdl--vPaav~AAralf~d~~~r 280 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDL--VPAAVVAARALFRDGNLR 280 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc--chHHHHHHHHHHhccchh
Confidence 66666666654432211111 111111111111 1 5666666666666666555 355556666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------HHHcCCHHHHHHHHHHHHhcC
Q 000173 1847 RGRSMFEGILSEYPKRTDLWSIYLDQ---------------------------------EIRLGDVDLIRGLFERAISLS 1893 (1935)
Q Consensus 1847 ~Ar~ife~al~~~Pk~~dlw~~ya~~---------------------------------e~k~g~~e~ar~lferal~~~ 1893 (1935)
+|-.++|.+.+..|. .++|..|.+. -.-.|++-.||.--|.+..
T Consensus 281 Kg~~ilE~aWK~ePH-P~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 281 KGSKILETAWKAEPH-PDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred hhhhHHHHHHhcCCC-hHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 666666666666654 4666666554 2234666667776666666
Q ss_pred CCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 000173 1894 LPPKKMKFLFKKYLEYEKSV-GEEERIEYVKQKAME 1928 (1935)
Q Consensus 1894 ~~pk~~k~l~~~yl~~E~~~-G~~e~a~~v~~rAle 1928 (1935)
..|.. .+|.-+.++|+.. ||..++++...+|+.
T Consensus 358 ~~pre--s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 358 EAPRE--SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hCchh--hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 55544 4788889998876 999999999988864
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0016 Score=75.49 Aligned_cols=194 Identities=14% Similarity=0.090 Sum_probs=114.7
Q ss_pred HhccCCCCcHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcC
Q 000173 1663 LLEKDAPRTPDEFERLVRSS---PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1739 (1935)
Q Consensus 1663 ~~~~~~~~a~~~ferll~~~---P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g 1739 (1935)
+...+...|+...+-.+... -++..+|+.+..| .+|++++|.+.|+-+...-... ..+|+.++-...-+|
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~f--hLgdY~~Al~~Y~~~~~~~~~~-----~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF--HLGDYEEALNVYTFLMNKDDAP-----AELGVNLACCKFYLG 105 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH--hhccHHHHHHHHHHHhccCCCC-----cccchhHHHHHHHHH
Confidence 33445667777666554322 2366777777655 4577888888887666532221 236665555444455
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1740 NPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
.+ .+|..+.++|-+.--...+.+.++ .+.++-.+-.. |+.-+. +...=-+.++...+.. .+++|.++|.|
T Consensus 106 ~Y--~eA~~~~~ka~k~pL~~RLlfhla---hklndEk~~~~-fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 106 QY--IEAKSIAEKAPKTPLCIRLLFHLA---HKLNDEKRILT-FHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HH--HHHHHHHhhCCCChHHHHHHHHHH---HHhCcHHHHHH-HHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 32 666666665532211112222222 23333333222 222221 2223344555555555 89999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
.|.-.|.. +.+-...|..+++..-++-+..++.-.|+..|+.+-..+-.+--.+
T Consensus 177 vL~dn~ey--~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 177 VLQDNPEY--IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF 230 (557)
T ss_pred HHhcChhh--hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 99988766 4555666777889999999999999999999998765554444333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00029 Score=65.35 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYP 1860 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g-~~e~Ar~ife~al~~~P 1860 (1935)
++.+|..+|..++.. ++++|...|.++++..|.+ ..+|..+|..++..| ++++|...|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN--AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH--HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 578999999999999 9999999999999999876 699999999999999 79999999999999988
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0018 Score=75.44 Aligned_cols=119 Identities=12% Similarity=0.113 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcC--CHHHHHHH
Q 000173 1776 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNG--VADRGRSM 1851 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~-~~g--~~e~Ar~i 1851 (1935)
.+....-++.-+...|++..-|..++..|+.+ ++..|...|.+|++..|++ +.++..||+.++ ..| +-.+|+.+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44555556677788899999999999999999 9999999999999999988 699999999776 333 56799999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000173 1852 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1852 fe~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk 1897 (1935)
|.+++..+|.+....+.|+.-++..|++.+|...++..+. .+++.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~-~lp~~ 260 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD-LLPAD 260 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCC
Confidence 9999999999999999999999999999999999999998 34443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.096 Score=59.00 Aligned_cols=216 Identities=16% Similarity=0.122 Sum_probs=157.1
Q ss_pred CCcHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1669 PRTPDEFERLVRSSPN--SSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~--s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~-i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
..+...+...+...+. ....+...+..+...+.+..+...+..++.. .. ......|..+..+....+ ....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~ 113 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL----PNLAEALLNLGLLLEALG--KYEE 113 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc----cchHHHHHHHHHHHHHHh--hHHH
Confidence 3444555566555555 3677777788888888999999888888863 11 112356677777777777 3478
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHH-HHHHcCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHc-CHHHHHHHHHHH
Q 000173 1746 VVKVFQRALQYCDPK-KVHLALLG-LYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1819 (1935)
Q Consensus 1746 a~~vferAl~~~~~~-~v~~~l~~-i~~~~~~~~~A~el~~~~~k~~~---~~~~vw~~~~~~l~~~-~~e~A~~ll~ra 1819 (1935)
+...+..++...+.. ..+..... ++...++++.|...|.+++...+ .....+..+...+... +++.|...+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 114 ALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 888888888876654 33444444 78888999999999999877433 3445555555555555 889999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1820 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+...+.. ....+...+..+...++.+.|...+..++...|.....|......+...+..+.+...+.+++.
T Consensus 194 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 194 LKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9888762 2478888888888888899999999999998888666666666655567778888888888887
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.011 Score=73.18 Aligned_cols=218 Identities=16% Similarity=0.111 Sum_probs=142.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--------HHHHHHH
Q 000173 1696 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--------KVHLALL 1767 (1935)
Q Consensus 1696 ~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~--------~v~~~l~ 1767 (1935)
..+..+++.|...|..++... .+ +.........+...+ ....+......|++..-.. .....++
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~----it~~~n~aA~~~e~~--~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TD----ITYLNNIAAVYLERG--KYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hh----hHHHHHHHHHHHhcc--HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 334456677777777777532 11 223334444455555 3355566666665554321 2233344
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCC--C----------HHHH--------------HHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1768 GLYERTEQNKLADELLYKMIKKFKH--S----------CKVW--------------LRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1768 ~i~~~~~~~~~A~el~~~~~k~~~~--~----------~~vw--------------~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
+.|...++++.|...|++++..+.. . ...| ..-+.-++.. ++..|...|.+|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5677778899999999998876542 0 1111 1223334444 8888889999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK 1900 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k 1900 (1935)
+..|.+ ..+|.+.|..+.+.|.+.+|..-.+.+++.+|+..-.|..-+..+.-..+++.|...|..++. ..|.+.
T Consensus 386 kr~P~D--a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~- 460 (539)
T KOG0548|consen 386 KRDPED--ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNA- 460 (539)
T ss_pred hcCCch--hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhH-
Confidence 998887 488999999999999999999999999999999888888888888888889999999999988 666665
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 000173 1901 FLFKKYLEYEKS-VGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1901 ~l~~~yl~~E~~-~G~~e~a~~v~~rAl 1927 (1935)
.+-..|..-... +|+ +.-..+++|++
T Consensus 461 e~~~~~~rc~~a~~~~-~~~ee~~~r~~ 487 (539)
T KOG0548|consen 461 EAIDGYRRCVEAQRGD-ETPEETKRRAM 487 (539)
T ss_pred HHHHHHHHHHHHhhcC-CCHHHHHHhhc
Confidence 233333332222 222 23345666654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00026 Score=68.54 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
+++.|..+|++++...|......+|..+|..+++.|++++|..++++ +...|.+.+.+..+++.+++.|++++|+.+|+
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45666666666666666422345566666666666666666666666 55556555655556666666666666666666
Q ss_pred HH
Q 000173 1888 RA 1889 (1935)
Q Consensus 1888 ra 1889 (1935)
++
T Consensus 83 ~~ 84 (84)
T PF12895_consen 83 KA 84 (84)
T ss_dssp HH
T ss_pred cC
Confidence 54
|
|
| >cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00065 Score=58.00 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=55.8
Q ss_pred ccEEEEEEEEeeccee-EEEeccCCceeEEEeeeecCCccccCCCeEEEEEEEeeccccEEEEee
Q 000173 875 GSVIEGKVHESNDFGV-VVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938 (1935)
Q Consensus 875 G~~v~g~V~~~~~~g~-~v~~~~~~~v~g~i~~~~ls~~~~~~G~~v~~~vl~~~~~~~~v~ls~ 938 (1935)
|+..+.+|.+..++|. .++-.+-.|++-..+.+|+.|..+.+|++++++||++|.-+..+++|+
T Consensus 1 G~~L~LvV~~~~edgsv~fs~g~v~g~tv~AtryH~~g~nl~pGqK~kaviLhvD~l~~~VhVSl 65 (65)
T cd05700 1 GDQLKLVVQDVTEDGSVMFSGGQVSGLTVLASRYHKEGVNVTPGCKLKAVILHVDFVKSQVHVSL 65 (65)
T ss_pred CceEEEEEeeeccCCcEEEecCCcCCcEEEEEEEEecceecCCCceeEEEEEEEeeEEeEEEEeC
Confidence 6778889999888874 466666667888899999999999999999999999999999999885
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0013 Score=72.92 Aligned_cols=94 Identities=10% Similarity=-0.056 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1746 VVKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1746 a~~vferAl~~~~~~---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
+...+...++..+.. ..|+.++.++...+++++|...|.+++...++. ..+|.+++..+... ++++|...|++
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444333322 566666667777777777777777776665432 34667777766666 77777777777
Q ss_pred HHHhCCCCChHHHHHHHHHHHHH
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
|+...|.. ...|...|.++..
T Consensus 98 Al~~~~~~--~~~~~~la~i~~~ 118 (168)
T CHL00033 98 ALERNPFL--PQALNNMAVICHY 118 (168)
T ss_pred HHHhCcCc--HHHHHHHHHHHHH
Confidence 77666554 3556666666663
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0015 Score=78.54 Aligned_cols=140 Identities=13% Similarity=0.142 Sum_probs=107.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C
Q 000173 1730 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1808 (1935)
Q Consensus 1730 ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~ 1808 (1935)
.-.|.+.+.|++ ..|..-|+||+...+.. ++-+.++... ... + -..++++++.++++. .
T Consensus 213 e~Gn~~fK~gk~--~~A~~~Yerav~~l~~~-----------~~~~~ee~~~-~~~-~-----k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 213 ERGNVLFKEGKF--KLAKKRYERAVSFLEYR-----------RSFDEEEQKK-AEA-L-----KLACHLNLAACYLKLKE 272 (397)
T ss_pred HhhhHHHhhchH--HHHHHHHHHHHHHhhcc-----------ccCCHHHHHH-HHH-H-----HHHHhhHHHHHHHhhhh
Confidence 356777788855 88899999987665421 1111111111 111 1 235678899999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD-LIRGLFE 1887 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e-~ar~lfe 1887 (1935)
+.+|.+...++|...|.+ ++++++-|+.+...|+++.||..|+++++..|.|.++-..++.+-.+...+. +.+.+|.
T Consensus 273 ~~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNN--VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877 6999999999999999999999999999999999999998888877766554 4588888
Q ss_pred HHHh
Q 000173 1888 RAIS 1891 (1935)
Q Consensus 1888 ral~ 1891 (1935)
+++.
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 8886
|
|
| >PHA02858 EIF2a-like PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00032 Score=64.83 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=67.0
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEee-ccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH-VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h-~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
.-.++|+.+. .|+.+.+.|++|.|-+-++.|++. .+|++..++..+.+.+ +|..+.+.|+.+|+++|-|.||.
T Consensus 12 ~~P~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 12 VFPNINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred ecCCCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 3457899998 889999999999998778999998 9999999999999999 99999999999999999999874
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.011 Score=67.64 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH-HHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTA 1836 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~-~~~~~~a 1836 (1935)
.++..+..+.+.|++.+|.+.|+++...||.+ ..+++.++..++.. +++.|...|++.++.+|.+.++ .++...|
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 34444566778899999999999999988744 67788888888888 9999999999999999988654 4555555
Q ss_pred HHHHH-----------cCCHHHHHHHHHHHHHhCCCCH----------HHHHHH-------HHHHHHcCCHHHHHHHHHH
Q 000173 1837 ILEFK-----------NGVADRGRSMFEGILSEYPKRT----------DLWSIY-------LDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1837 ~le~~-----------~g~~e~Ar~ife~al~~~Pk~~----------dlw~~y-------a~~e~k~g~~e~ar~lfer 1888 (1935)
...+. .+...+|...|+.++..+|++. .+...+ ++++.+.|.+..|..-|+.
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~ 166 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQY 166 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 54432 2235688999999999999852 123222 4455678999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000173 1889 AISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1919 (1935)
Q Consensus 1889 al~~~~~pk~~k~l~~~yl~~E~~~G~~e~a 1919 (1935)
++..=.........+...+.-..+.|..+.+
T Consensus 167 v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 167 VIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 9982112223334455555555667776643
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.061 Score=60.67 Aligned_cols=223 Identities=18% Similarity=0.137 Sum_probs=154.2
Q ss_pred cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh--cCC-CHHHHHHHHHHHHHcCC
Q 000173 1699 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ--YCD-PKKVHLALLGLYERTEQ 1775 (1935)
Q Consensus 1699 ~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~--~~~-~~~v~~~l~~i~~~~~~ 1775 (1935)
...+..+...+..++...+.. .....+..........+ ....+...+..++. ..+ ....|..++.++...++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (291)
T COG0457 36 LGELAEALELLEEALELLPNS---DLAGLLLLLALALLKLG--RLEEALELLEKALELELLPNLAEALLNLGLLLEALGK 110 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc---cchHHHHHHHHHHHHcc--cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh
Confidence 355566666666666544421 01234455555556666 44777778888875 233 34788888888888888
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHc-CHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1776 NKLADELLYKMIKKFKHSCKVWLRRVQ-RLLKQ-QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVADRGRSMF 1852 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~~~~vw~~~~~-~l~~~-~~e~A~~ll~ralk~~p~-~~~~~~~~~~a~le~~~g~~e~Ar~if 1852 (1935)
+..+.+.+..+....+.....+..+.. .+... +++.|...|++++...|. ......+...+..+...++++.|...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 888999888888776655555555555 56666 889999999988775552 233456666666677888899999999
Q ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1853 EGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1853 e~al~~~Pk-~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.+++...|. ....+......+...++.+.+...+..++. ..+.....++.....+. ..|..+.+...+.+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 191 EKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLL-ELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 999988888 578888888888888888889999988888 55443323333344444 667788888777777654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00044 Score=63.86 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=35.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
++.|++++|..+|++++..+|.+.++|..++.++++.|++++|+.+|++++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777777777777776666
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00041 Score=64.02 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=50.6
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
+.. ++++|.++|++++...|.+ ..++..+|.++++.|++++|+.+|++++..+|++..+|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 344 6788888888888888876 4788888888888888888888888888888887777766554
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00049 Score=62.99 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1800 RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1800 ~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
++..++.. ++++|...|+++++..|.+ ..+|..+|.+++..|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN--PEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44455555 5666666666666665553 4566666666666666666666666666666654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.01 Score=77.13 Aligned_cols=156 Identities=10% Similarity=0.029 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH--HcC---CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HHcCCCCHHH
Q 000173 1672 PDEFERLVRSSPNSSFVWIKYMAFML--SMA---DVEKARSIAERALQTINIREENEKLNIWVAYFNLE-NEYGNPPEEA 1745 (1935)
Q Consensus 1672 ~~~ferll~~~P~s~~lW~~y~~~~l--~~~---e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le-~~~g~~~~e~ 1745 (1935)
....+++....|.+..+|-.|+.... ... +.++|+.+|++|++.-|. +-....++++.... ..+. ...+
T Consensus 323 ~~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~---~a~a~A~la~~~~~~~~~~--~~~~ 397 (517)
T PRK10153 323 ERMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD---FTYAQAEKALADIVRHSQQ--PLDE 397 (517)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHhcC--CccH
Confidence 44455666677899999999888753 322 488999999999987663 22222222222211 1111 1000
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1746 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1746 a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~--~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
.+...+.+...+++.. .+..+.+|..++...... ++++|...|++|+..
T Consensus 398 ----------------------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 398 ----------------------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL 449 (517)
T ss_pred ----------------------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 0111222233333332 233445555555555555 677777777777776
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1863 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~ 1863 (1935)
.|. ...|..+|.++...|++++|...|++|++.+|...
T Consensus 450 ~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 450 EMS---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 652 35677777777777777777777777777777654
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00054 Score=78.12 Aligned_cols=154 Identities=17% Similarity=0.197 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~ 1822 (1935)
-+.+..|+.-|+..... +-|+.|++.....++.- |.. +|+-....+ ..+.++- -+++..-+|.|+...
T Consensus 34 vktRr~fE~rL~rr~~klnDf~~YI~yE~nleklR-aKR-----~Kr~~v~~K--~s~sD~s---ipqk~~f~~~R~tnk 102 (435)
T COG5191 34 VKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLR-AKR-----VKRKKVGKK--ASFSDMS---IPQKKIFELYRSTNK 102 (435)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHH-HHH-----HHHHHhccc--ccchhcc---ccceeeEeeehhhhc
Confidence 34567777776665443 77888877664333221 111 111100000 0000100 234445577888888
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchhHHH
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI-RLGDVDLIRGLFERAISLSLPPKKMKF 1901 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~-k~g~~e~ar~lferal~~~~~pk~~k~ 1901 (1935)
+|++ +++|..|+..-.+.|.+.....+|-.+++.+|.+.|+|...+++++ -.++++.+|++|.+++. ++++.+ .
T Consensus 103 ff~D--~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR--~N~~~p-~ 177 (435)
T COG5191 103 FFND--PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR--MNSRSP-R 177 (435)
T ss_pred CCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc--cCCCCc-h
Confidence 8877 6999999999999999999999999999999999999999888876 57999999999999999 888888 6
Q ss_pred HHHHHHHHHHHc
Q 000173 1902 LFKKYLEYEKSV 1913 (1935)
Q Consensus 1902 l~~~yl~~E~~~ 1913 (1935)
+|..|..+|..+
T Consensus 178 iw~eyfr~El~y 189 (435)
T COG5191 178 IWIEYFRMELMY 189 (435)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
|
|
| >PRK12327 nusA transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00019 Score=87.51 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=86.8
Q ss_pred cccccCCCeEeeEEEeecCCCeEEEeccchhcchhcc--CCcccccc--CCCCEEEEEEEEEecCeEEEEECCCeEEEee
Q 000173 715 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHI--HPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790 (1935)
Q Consensus 715 ~~~~k~G~~l~~vl~~d~~~~~i~ls~K~~l~~~~~~--~~~~~~~~--~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~ 790 (1935)
....++||.++.-+....-++....++|+.+...-.. --.-|+++ +.|+.++|+|.++.+.|+||.+ |++.||+|
T Consensus 84 ~~~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP 162 (362)
T PRK12327 84 NPAYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSEREGDIVTGVVQRRDNRFVYVNL-GKIEAVLP 162 (362)
T ss_pred CccccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEEeCCcEEEEe-CCeEEEec
Confidence 3467789988733332223344556667666544321 11124556 7899999999999999999999 66999999
Q ss_pred CCccCcccccCcccCccCCCEEEEEEEEeeCCCCe--EEEeecccccCCCCchhhHHHHHHH
Q 000173 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASFMQEHFLLE 850 (1935)
Q Consensus 791 ~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~r--l~LSlk~~~~~~~d~~~i~~~l~~~ 850 (1935)
.+++. |.+.|++||+++|.|.+++.+.++ +.||. +++.|+..+|..+
T Consensus 163 ~~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSR-------t~p~~v~~Lfe~E 211 (362)
T PRK12327 163 PAEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSR-------THPGLVKRLFELE 211 (362)
T ss_pred HHHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEe-------CCHHHHHHHHHHh
Confidence 88774 357899999999999999976654 66665 4556777777654
|
|
| >COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00044 Score=74.44 Aligned_cols=74 Identities=24% Similarity=0.469 Sum_probs=62.0
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-C----------ccccCCCCcEEEEEEEEEeCCC-----C
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-S----------PEKEFPIGKLVAGRVLSVEPLS-----K 1441 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~-~----------~~~~f~~G~~V~~kVl~vd~~~-----~ 1441 (1935)
.|++|.|.|+++.++|+||.+| -++||+|.+.+.|+|+. | -+..|++|+.|+++|+++.... .
T Consensus 81 ~gEVV~GeVv~~~~~G~fV~ig-p~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~~~ 159 (183)
T COG1095 81 RGEVVEGEVVEVVEFGAFVRIG-PLDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPRES 159 (183)
T ss_pred cccEEEEEEEEEeecceEEEec-cccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCccccc
Confidence 5899999999999999999999 79999999999998532 1 2237889999999999887655 5
Q ss_pred EEEEEEecCcc
Q 000173 1442 RVEVTLKTSDS 1452 (1935)
Q Consensus 1442 ri~lSlk~~~~ 1452 (1935)
+|.+++|+.-.
T Consensus 160 ~I~lTmrq~~L 170 (183)
T COG1095 160 KIGLTMRQPGL 170 (183)
T ss_pred eEEEEeccccC
Confidence 78888888544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0049 Score=73.57 Aligned_cols=163 Identities=14% Similarity=0.030 Sum_probs=129.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH---------
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--------- 1760 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~--------- 1760 (1935)
+--+.++.-.++++.|..+.-+.++.-+.+. .-.|++=...|.+-..+.+...|+++|.+.|..
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~ilkld~~n~-------~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDILKLDATNA-------EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHhcccchh-------HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 3344556788999999999999997654322 222222111111114588999999999998752
Q ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHH
Q 000173 1761 ----KVHLALLGLYERTEQNKLADELLYKMIKKFKH----SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKF 1831 (1935)
Q Consensus 1761 ----~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~----~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~ 1831 (1935)
..|-.-++-..+.|++..|.+.|..++.+.|. +..+|.+.+....+. +..+|..--.+|++..|.. ++.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy--ika 323 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY--IKA 323 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH--HHH
Confidence 66777788888999999999999999999874 467788888888888 9999999999999998766 799
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1832 ISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1832 ~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
++..|+.+...++++.|.+.|+++++...+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999988655
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0013 Score=79.05 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=75.4
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CH
Q 000173 1734 LENEYGNPPEEAVVKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQ 1809 (1935)
Q Consensus 1734 le~~~g~~~~e~a~~vferAl~~~~~~---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~ 1809 (1935)
+....+ ..+.|.+.++.+-+..+.. ++..+|++++.-.+++.+|.-+|+.+..+|+.++.++..++...+.+ ++
T Consensus 140 i~L~~~--R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 140 ILLKMN--RPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY 217 (290)
T ss_dssp HHHHTT---HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H
T ss_pred HHHHcC--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH
Confidence 444556 3466777776666655543 55555555555555667777777776666666666666666666666 77
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCC
Q 000173 1810 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA-DRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1810 e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~-e~Ar~ife~al~~~Pk~ 1862 (1935)
++|.++++.|+...|.+ +.++.+.+.+....|+. +.+...+.++-..+|.+
T Consensus 218 ~eAe~~L~~al~~~~~~--~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 218 EEAEELLEEALEKDPND--PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHCCC-CCH--HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 77777777776665544 46666666666666655 55666666666666664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK08563 DNA-directed RNA polymerase subunit E'; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00082 Score=75.69 Aligned_cols=76 Identities=20% Similarity=0.436 Sum_probs=63.9
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-----------CccccCCCCcEEEEEEEEEeCCC-----
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLS----- 1440 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~-----------~~~~~f~~G~~V~~kVl~vd~~~----- 1440 (1935)
.+|+++.|.|++++++|+||+++ .++|+++.+++.+++.. +....|++|+.|+++|++++.++
T Consensus 80 ~~GEVv~g~V~~v~~~Gi~V~lg-~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~~~ 158 (187)
T PRK08563 80 ELQEVVEGEVVEVVEFGAFVRIG-PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRPRG 158 (187)
T ss_pred cCCCEEEEEEEEEEccEEEEEEe-CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCCCC
Confidence 46999999999999999999998 59999999999876432 33467899999999999998754
Q ss_pred CEEEEEEecCccc
Q 000173 1441 KRVEVTLKTSDSR 1453 (1935)
Q Consensus 1441 ~ri~lSlk~~~~~ 1453 (1935)
.+|.+|++..-..
T Consensus 159 ~~I~ls~~~~~LG 171 (187)
T PRK08563 159 SKIGLTMRQPGLG 171 (187)
T ss_pred CEEEEEecCCCCC
Confidence 3899999886543
|
|
| >PRK11642 exoribonuclease R; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00057 Score=92.42 Aligned_cols=73 Identities=25% Similarity=0.399 Sum_probs=64.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCC-cEEEEECccCCCcc-cC----------CccccCCCCcEEEEEEEEEeCCCCEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGY-VE----------SPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~-v~g~V~~s~lsd~~-~~----------~~~~~f~~G~~V~~kVl~vd~~~~ri~ 1444 (1935)
++|+++.|.|++|+++|+||+|.+. ++|+||+++|.|+| .- +....|++||.|+++|+++|.++++|.
T Consensus 642 ~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rkI~ 721 (813)
T PRK11642 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERKID 721 (813)
T ss_pred cCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCeEE
Confidence 6899999999999999999999865 99999999999763 22 234679999999999999999999999
Q ss_pred EEEec
Q 000173 1445 VTLKT 1449 (1935)
Q Consensus 1445 lSlk~ 1449 (1935)
+++-.
T Consensus 722 f~l~~ 726 (813)
T PRK11642 722 FSLIS 726 (813)
T ss_pred EEEec
Confidence 99853
|
|
| >TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00059 Score=91.19 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=63.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC-CCcEEEEECccCCCcc-c----------CCccccCCCCcEEEEEEEEEeCCCCEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGY-V----------ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~-~~v~g~V~~s~lsd~~-~----------~~~~~~f~~G~~V~~kVl~vd~~~~ri~ 1444 (1935)
++|+++.|.|++|+++|+||.|+ .+++|+||++++.|++ . .+....|++||.|+++|+++|.++++|.
T Consensus 571 ~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~I~ 650 (654)
T TIGR00358 571 KVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRSII 650 (654)
T ss_pred CCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCeEE
Confidence 57999999999999999999998 7899999999999864 1 2334679999999999999999999999
Q ss_pred EEE
Q 000173 1445 VTL 1447 (1935)
Q Consensus 1445 lSl 1447 (1935)
+++
T Consensus 651 f~l 653 (654)
T TIGR00358 651 FEL 653 (654)
T ss_pred EEE
Confidence 886
|
This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0078 Score=74.37 Aligned_cols=176 Identities=11% Similarity=0.095 Sum_probs=115.6
Q ss_pred HHcCCCCH---HHH--HHHHHHHHH--cC---CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHc-C--CC--CH
Q 000173 1679 VRSSPNSS---FVW--IKYMAFMLS--MA---DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY-G--NP--PE 1743 (1935)
Q Consensus 1679 l~~~P~s~---~lW--~~y~~~~l~--~~---e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~-g--~~--~~ 1743 (1935)
...-|.+. ..| -.|+..... .+ ..+.|..+|+||+.+-+...++-...-|.++..+...+ | +. ..
T Consensus 241 ~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~ 320 (458)
T PRK11906 241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA 320 (458)
T ss_pred hcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 34446666 788 556555432 22 56788899999994333222333345555555554422 1 10 24
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
.+|.+..+||++..+.+ ..+..++.++...++++.|..+|+++....|++..+|+.++..+.-. +.++|.+.+++|+.
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 56788888888888765 67777777777777788888888888888888888888888877777 88888888888888
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1855 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~a 1855 (1935)
..|.+....+...+..+|+.+ -.+.|..+|-+-
T Consensus 401 LsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 401 LEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred cCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 888775444555555455443 344555554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.04 Score=64.81 Aligned_cols=162 Identities=12% Similarity=0.048 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV---WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1835 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~v---w~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~-~~~~~~ 1835 (1935)
..++..+.-+.+.|++++|.+.|++++..+|.+.-. .+.++..+++. +++.|...|++.++..|.+..+ .++...
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 445555666678899999999999999999877544 36777778888 9999999999999999998654 355665
Q ss_pred HHHHHHcC---------------CH---HHHHHHHHHHHHhCCCCHH---HH-------H-------HHHHHHHHcCCHH
Q 000173 1836 AILEFKNG---------------VA---DRGRSMFEGILSEYPKRTD---LW-------S-------IYLDQEIRLGDVD 1880 (1935)
Q Consensus 1836 a~le~~~g---------------~~---e~Ar~ife~al~~~Pk~~d---lw-------~-------~ya~~e~k~g~~e 1880 (1935)
|...+..+ |. ..|...|++.++.+|+..- ++ . .-+.++.+.|.+.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 55432222 23 3566889999999998622 11 1 2234456788898
Q ss_pred HHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1881 LIRGLFERAISLSLP--PKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1924 (1935)
Q Consensus 1881 ~ar~lferal~~~~~--pk~~k~l~~~yl~~E~~~G~~e~a~~v~~ 1924 (1935)
-|..-|+.++. ..| +...+.+| ....-....|..+.+..+..
T Consensus 193 AA~~r~~~v~~-~Yp~t~~~~eal~-~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 193 AVVNRVEQMLR-DYPDTQATRDALP-LMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHH-HCCCCchHHHHHH-HHHHHHHHcCChHHHHHHHH
Confidence 89999999997 222 22222222 23334455777777665543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0035 Score=75.52 Aligned_cols=146 Identities=12% Similarity=0.132 Sum_probs=105.9
Q ss_pred HHHHHhcCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHc-CHHHHHHHHHHHHHhC
Q 000173 1750 FQRALQYCD---PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK--VWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1750 ferAl~~~~---~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~--vw~~~~~~l~~~-~~e~A~~ll~ralk~~ 1823 (1935)
++.|++... ..+...-...+|.+.++++.|...++.|.+...++.- ++..|..+..-. ++++|..+|+.....+
T Consensus 118 ~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~ 197 (290)
T PF04733_consen 118 YEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF 197 (290)
T ss_dssp HHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc
Confidence 344554443 3466677788999999999999999998765443322 222333333334 7999999999988777
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCchhH
Q 000173 1824 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-DLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1824 p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~-e~ar~lferal~~~~~pk~~ 1899 (1935)
+.. +.++...|..++..|++++|..+++.++..+|++.+.+...+-+..-.|+. +.+..++..+-. ..|...
T Consensus 198 ~~t--~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 198 GST--PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp --S--HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred CCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 654 688889999999999999999999999999999999999999998888887 667778887665 455443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0082 Score=62.06 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTDLWSIY 1869 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~-~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk---~~dlw~~y 1869 (1935)
.+++.++..+... +.++|..+|++++...... ....+++.+|..+...|++++|..+|+.++..+|. +..++..|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 4677777777777 8899999999998854333 22478999999999999999999999999999998 67788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 000173 1870 LDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1870 a~~e~k~g~~e~ar~lferal~ 1891 (1935)
+......|+.++|...+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888899999999999888886
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.099 Score=68.39 Aligned_cols=217 Identities=15% Similarity=0.150 Sum_probs=145.9
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
.-.|-+..+++++.+||...+-.--+-.++++|..++|..+.+ |+...+.++ .. ..-.+-+++...+ ..+.|.
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~D-~~---tLq~l~~~y~d~~--~~d~~~ 97 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGTD-DL---TLQFLQNVYRDLG--KLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCCc-hH---HHHHHHHHHHHHh--hhhHHH
Confidence 5566777889999999988777777777889999999996664 554444432 22 2333445566677 459999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CHH---------HHHHHH
Q 000173 1748 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQE---------GVQAVV 1816 (1935)
Q Consensus 1748 ~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~--~~e---------~A~~ll 1816 (1935)
.+|+||++.+|.....++|...|.+-+.|.+-..+--++-|.+|..+-.+-.....+++. .++ -|+..+
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 999999999999877777777777777777666666666678875544333333444433 322 244455
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1817 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1817 ~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~--~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..++.-..-....=...|-..+...|++++|...+..-+.. .+-+..+-+.-+++....+...+.-.+-.|++.
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 555544311111222233333444678899999999554433 344666777888999999999998888888888
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00089 Score=64.83 Aligned_cols=80 Identities=15% Similarity=0.048 Sum_probs=59.9
Q ss_pred cCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000173 1773 TEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1849 (1935)
Q Consensus 1773 ~~~~~~A~el~~~~~k~~~~--~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar 1849 (1935)
.++++.|..+|++++...+. ....|+.+|..+++. ++++|..++++ ++..+. ++..+..+|+.+++.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHHH
Confidence 56788888888888887763 466778888888888 88888888888 555443 3567777788888888888888
Q ss_pred HHHHHH
Q 000173 1850 SMFEGI 1855 (1935)
Q Consensus 1850 ~ife~a 1855 (1935)
..|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888874
|
|
| >cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0019 Score=62.91 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=52.7
Q ss_pred CCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCc-----------ccccCCCCEEEEEEEEEecCCCe
Q 000173 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI-----------ETIYRAGEKVKVKILKVDKEKRR 1533 (1935)
Q Consensus 1468 ~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~-----------~~~~~~Gd~V~~~Il~id~~~~r 1533 (1935)
+|+++.|.|+++.++|+||.++| +++++|.+.+.++..-++ ...+..|+.|++||+.+..+.+.
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~Gp--l~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~ 75 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVGP--LSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDATD 75 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEcC--ceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEccCc
Confidence 58999999999999999999975 899999999976543221 34588999999999999776554
|
RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination. |
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0033 Score=65.71 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhCC-CCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHH
Q 000173 1810 EGVQAVVQRALLSLP-RHKHIKFISQTAILEFKN----GVADRGRSMFEGILSEYPKR---------TDLWSIYLDQEIR 1875 (1935)
Q Consensus 1810 e~A~~ll~ralk~~p-~~~~~~~~~~~a~le~~~----g~~e~Ar~ife~al~~~Pk~---------~dlw~~ya~~e~k 1875 (1935)
++.++.|+..+.... .+..+..|..|..+..++ +.-..-..+++++++.+.++ ..+|..|+++..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 445666777777666 555567777777766632 34555667788887766442 347888888643
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1876 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
.++.+|..+.+.....+-+ .||..|..+.+..|+.+.|..||++++
T Consensus 81 -----~~~~if~~l~~~~IG~~~A-~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -----DPREIFKFLYSKGIGTKLA-LFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----HHHHHHHHHHHHTTSTTBH-HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCccHHHH-HHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 7888999888877777777 799999999999999999999998875
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.036 Score=64.64 Aligned_cols=204 Identities=16% Similarity=0.134 Sum_probs=110.5
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHH-HHHHHHHcCCCCHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA-YFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~a-yl~le~~~g~~~~e~a 1746 (1935)
-.+|...|+-+...+--++.+|.+++-.+.-+|.+.+|..+.++|.++ | +.+. ++.+..+++ ++++
T Consensus 73 Y~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-p---------L~~RLlfhlahkln--dEk~- 139 (557)
T KOG3785|consen 73 YEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-P---------LCIRLLFHLAHKLN--DEKR- 139 (557)
T ss_pred HHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-h---------HHHHHHHHHHHHhC--cHHH-
Confidence 445555666555555567899999999999999999999999998854 2 2222 234445555 2222
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1747 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1747 ~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
.-.|...|+-. .+--+.++.+....--|++|.++|.+.+-..+....+-..++.++.+. -++-+.+++.--|..+|.
T Consensus 140 ~~~fh~~LqD~--~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 140 ILTFHSSLQDT--LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 22333333211 122333444433334455666666666554444444444555555555 555555566655665555
Q ss_pred CChHHHHHHHHHHHHH--cCC----------------HHHHHHHH----------HHHHHhCCCC----HHHHHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFK--NGV----------------ADRGRSMF----------EGILSEYPKR----TDLWSIYLDQE 1873 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~--~g~----------------~e~Ar~if----------e~al~~~Pk~----~dlw~~ya~~e 1873 (1935)
+. -+....|..+|+ +|+ ++.+..+. |.||+..|.- +.....++-.+
T Consensus 218 St--iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 218 ST--IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred cH--HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 42 111112222221 111 11111111 2334545542 23566777788
Q ss_pred HHcCCHHHHHHHHHH
Q 000173 1874 IRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1874 ~k~g~~e~ar~lfer 1888 (1935)
.++++..+|.++...
T Consensus 296 L~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKD 310 (557)
T ss_pred cccccHHHHHHHHhh
Confidence 899999999998765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0068 Score=73.08 Aligned_cols=141 Identities=21% Similarity=0.236 Sum_probs=105.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 000173 1694 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1773 (1935)
Q Consensus 1694 ~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~ 1773 (1935)
..+++.+++..|..-|+||+..++++. .+. .++ .+.+..+ -...|+.++.+|.+.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~----------------~~~---~ee-~~~~~~~-----k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRR----------------SFD---EEE-QKKAEAL-----KLACHLNLAACYLKL 270 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccc----------------cCC---HHH-HHHHHHH-----HHHHhhHHHHHHHhh
Confidence 457788999999999999997666422 111 111 1111111 125678888889999
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHH
Q 000173 1774 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSM 1851 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~-~e~Ar~i 1851 (1935)
+.|..|.+...+++...+++.+..++.++.++.. +++.|+..|++|++..|.++ .+-..++.+-.+... .++.+.+
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk--a~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK--AARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998899999999999999999 99999999999999999885 566666666555544 4566889
Q ss_pred HHHHHHhCCC
Q 000173 1852 FEGILSEYPK 1861 (1935)
Q Consensus 1852 fe~al~~~Pk 1861 (1935)
|.+++...+.
T Consensus 349 y~~mF~k~~~ 358 (397)
T KOG0543|consen 349 YANMFAKLAE 358 (397)
T ss_pred HHHHhhcccc
Confidence 9998876553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.011 Score=68.40 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTA 1836 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a 1836 (1935)
.|.....+| .+++|..|...|..-+++||++ +..++=|++.++.+ +++.|..+|.++.+.+|++. -++.++++|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 444444444 6788999999999999999854 66677788889999 99999999999999999874 358999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw 1866 (1935)
..+.++|+-+.|+..|+.+++.||+....-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999975543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0024 Score=59.78 Aligned_cols=55 Identities=25% Similarity=0.212 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
+++.|.+.+++++...|.+ +.+|..+|.+++..|+++.|...|+++++..|++.+
T Consensus 10 ~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDD--PELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CHHHHHHHHHHHHHhCccc--chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4444444444444444443 244444444444444444444444444444444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0012 Score=55.29 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
.+|..+|+.+...|++++|+.+|+++++.+|++.++|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 579999999999999999999999999999999999998875
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.067 Score=60.10 Aligned_cols=195 Identities=16% Similarity=0.160 Sum_probs=118.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHH------HHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 000173 1693 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY------FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1766 (1935)
Q Consensus 1693 ~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ay------l~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l 1766 (1935)
+..+-....+++|...+.+|.+-. |..+ ++|-+- +.|...... ..++..+|++|
T Consensus 38 AvafRnAk~feKakdcLlkA~~~y----Ennr-slfhAAKayEqaamLake~~k--lsEvvdl~eKA------------- 97 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGY----ENNR-SLFHAAKAYEQAAMLAKELSK--LSEVVDLYEKA------------- 97 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHH----Hhcc-cHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHH-------------
Confidence 455555667777777777666421 1111 233221 112222221 13444444444
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHH
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFK 1841 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~----~~~~~~~~a~le~~ 1841 (1935)
..+|..+|..+.|-..++++-+ .++. ++++|.++|+|++..+.... -.+++.+.+..+.+
T Consensus 98 s~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 3566777777777666666654 4556 89999999999998775432 24677778888888
Q ss_pred cCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHHc
Q 000173 1842 NGVADRGRSMFEGIL------SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS--LPPKKMKFLFKKYLEYEKSV 1913 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al------~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~--~~pk~~k~l~~~yl~~E~~~ 1913 (1935)
...+++|-.-|.+-. ..+|.....+...+-++.-..|+..|...|....+.. +.+... ......|.++. .
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~-r~lenLL~ayd-~ 240 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS-RSLENLLTAYD-E 240 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH-HHHHHHHHHhc-c
Confidence 888888888777653 3456655566666666666778888888888755421 223333 34555555543 6
Q ss_pred CCHHHHHHHHH
Q 000173 1914 GEEERIEYVKQ 1924 (1935)
Q Consensus 1914 G~~e~a~~v~~ 1924 (1935)
||.+.+..|+.
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 88888777763
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.11 Score=66.55 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=113.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1691 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1770 (1935)
Q Consensus 1691 ~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~ 1770 (1935)
+-+....++|-+++|..+|.++-+. ++.. .|+...|.+ .+|.++.+-- ..+.-.+.|+.|+..+
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~----------DLlN---KlyQs~g~w--~eA~eiAE~~-DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY----------DLLN---KLYQSQGMW--SEAFEIAETK-DRIHLRNTYYNYAKYL 868 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH----------HHHH---HHHHhcccH--HHHHHHHhhc-cceehhhhHHHHHHHH
Confidence 3344455667777777777766531 1111 122333322 3333222210 0111235666666666
Q ss_pred HHcCChHHHHHHHHH----------HHHhcC----------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC-----
Q 000173 1771 ERTEQNKLADELLYK----------MIKKFK----------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP----- 1824 (1935)
Q Consensus 1771 ~~~~~~~~A~el~~~----------~~k~~~----------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p----- 1824 (1935)
+..++.+.|.+.|++ |++.+| ..+++|.=|++++... +.+.|..+|..|-..+.
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~ 948 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIK 948 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeE
Confidence 666666666666664 333332 3455666666666666 66666666666533221
Q ss_pred --------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCCC---CHHHHHHH-----------H
Q 000173 1825 --------------RHKHIKFISQTAILEFKNGVADRGRSMFEGI------LSEYPK---RTDLWSIY-----------L 1870 (1935)
Q Consensus 1825 --------------~~~~~~~~~~~a~le~~~g~~e~Ar~ife~a------l~~~Pk---~~dlw~~y-----------a 1870 (1935)
......+-+.+|+.|...|+.-+|...|-+| ++.... ...+|+.. +
T Consensus 949 C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred eeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHH
Confidence 0111245556666666667766666665554 222211 11233321 1
Q ss_pred HHHHHcC-CHHHHHHHHHHH---------------------HhcCCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1871 DQEIRLG-DVDLIRGLFERA---------------------ISLSLPPK-KMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1871 ~~e~k~g-~~e~ar~lfera---------------------l~~~~~pk-~~k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
.++...| ..++|-.+|.+| |..++.+. .+ .+..+-.+|-..+..+++|-.++-.|.
T Consensus 1029 rYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp-~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1029 RYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP-KLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH-HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2222222 445555444433 11234332 23 578888888887878888777776666
Q ss_pred HHHH
Q 000173 1928 EYVE 1931 (1935)
Q Consensus 1928 e~v~ 1931 (1935)
+|=.
T Consensus 1108 ~~~~ 1111 (1416)
T KOG3617|consen 1108 EFSG 1111 (1416)
T ss_pred HHHH
Confidence 6544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.13 Score=59.25 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--HH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--KV 1762 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~--~v 1762 (1935)
....|.+-+.-.++.|++++|...|+......|+++-.++..+=.+|+++ +-+ +.+.|...++|-++..|.. --
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y--k~~--~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY--KNG--EYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH--hcc--cHHHHHHHHHHHHHhCCCCCChh
Confidence 45677777777888888888888888888888887766654444444444 344 3377888888888888763 33
Q ss_pred HHHHHHHHH---Hc----CC---hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHH
Q 000173 1763 HLALLGLYE---RT----EQ---NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFI 1832 (1935)
Q Consensus 1763 ~~~l~~i~~---~~----~~---~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~ 1832 (1935)
|..|+..+. .. .+ ..+|...|+..+.+||++.= ...|..-+..+-..+ ...=
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-------------a~dA~~~i~~~~d~L-----A~~E 170 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY-------------APDAKARIVKLNDAL-----AGHE 170 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc-------------hhhHHHHHHHHHHHH-----HHHH
Confidence 333333221 11 11 34566677777888887643 112221111111111 1233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHh
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY---LDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~y---a~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..|.++++.|.+..|..-|+++++.+|+....--.+ ...+...|-.+.|... .++|.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~ 231 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLG 231 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHH
Confidence 5567788888888888888888888888765543333 3334456666655543 33444
|
|
| >PRK05054 exoribonuclease II; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0025 Score=84.82 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=60.3
Q ss_pred CCC--cEEEeEEEEEeeceEEEEEecCceeEEeeccccCcc---cc--cC-------cccccCCCCEEEEEEEEEecCCC
Q 000173 1467 HVG--DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED---HV--DN-------IETIYRAGEKVKVKILKVDKEKR 1532 (1935)
Q Consensus 1467 ~~G--~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~---~~--~~-------~~~~~~~Gd~V~~~Il~id~~~~ 1532 (1935)
++| +.+.|.|+.|++||+||+|.+.++.||+|++.+.+. +. .+ -...|+.||.|+++|.++|.+++
T Consensus 558 ~~G~~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~ 637 (644)
T PRK05054 558 KAGTDTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETR 637 (644)
T ss_pred ccCCCeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccC
Confidence 465 599999999999999999998789999999999653 11 11 12579999999999999999999
Q ss_pred eeEEec
Q 000173 1533 RISLGM 1538 (1935)
Q Consensus 1533 ri~lsl 1538 (1935)
+|.+.+
T Consensus 638 ~i~~~~ 643 (644)
T PRK05054 638 SIIARP 643 (644)
T ss_pred eEEEEE
Confidence 998764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.038 Score=59.52 Aligned_cols=95 Identities=11% Similarity=-0.055 Sum_probs=82.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000173 1768 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1768 ~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e 1846 (1935)
--+.+.|++++|..+|.-++...+.+.+.|+.++.++... ++++|...|..|....+.+ +......|+.++..|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--p~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--YRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--CCccchHHHHHHHhCCHH
Confidence 3445899999999999999988889999999999999998 9999999999999887665 366788899999999999
Q ss_pred HHHHHHHHHHHhCCCCHHH
Q 000173 1847 RGRSMFEGILSEYPKRTDL 1865 (1935)
Q Consensus 1847 ~Ar~ife~al~~~Pk~~dl 1865 (1935)
.|+..|+.++. .|....+
T Consensus 123 ~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 123 KARQCFELVNE-RTEDESL 140 (165)
T ss_pred HHHHHHHHHHh-CcchHHH
Confidence 99999999988 4554443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0037 Score=72.26 Aligned_cols=105 Identities=16% Similarity=0.067 Sum_probs=95.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1845 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~ 1845 (1935)
++-|.+.|+|++|.++|.+++..+|.++-.+.+.+..|++. .+..|..-...|+..+.. .+++|...++.-+..|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHHhhH
Confidence 46678899999999999999999999999999999999999 999999999999887633 379999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1846 DRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1846 e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
.+|..-+|++|+..|++..|--.|+++-
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 9999999999999999999988888764
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.016 Score=62.93 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=82.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc
Q 000173 1695 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERT 1773 (1935)
Q Consensus 1695 ~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~ 1773 (1935)
-++..|++++|..-|.+||...|.....++.-++...+.....++.+ +.|..-.-+|++++|.. ....+.+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~--e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW--ESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH--HHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 35678999999999999999999877777777777777777788855 88999999999999986 7777889999999
Q ss_pred CChHHHHHHHHHHHHhcCCCH
Q 000173 1774 EQNKLADELLYKMIKKFKHSC 1794 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~~~~~ 1794 (1935)
.+|++|.+-|.+.+...|...
T Consensus 182 ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchH
Confidence 999999999999988766433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0058 Score=57.20 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=57.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
..+|.+.+++++|.+.+++++...|.++..|+.++.++... ++++|...|+++++..|...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 56889999999999999999999999999999999999999 99999999999999999774
|
|
| >PHA02858 EIF2a-like PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0035 Score=58.14 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=62.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEe-CCCcEEEEE-CccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIML-SRKLDAKVL-LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l-~~~v~g~V~-~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSl 1447 (1935)
++|+++. .|+.+.+.|++|.| +.+++|.+. .++++.......++.+ +|....+.|+++|+++|-|.||.
T Consensus 15 ~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 15 NINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred CCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 5789998 88899999999987 557999999 9999999888888888 99999999999999999999984
|
|
| >COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=63.91 Aligned_cols=75 Identities=24% Similarity=0.389 Sum_probs=63.4
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEec---------CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCe
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1533 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~---------~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~r 1533 (1935)
..-++.|++|-|.|+++....+.|++-. +...|-+|+|++++.+++++++.|++||.|+|+|++.- -.
T Consensus 59 ~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~ 135 (188)
T COG1096 59 PPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DP 135 (188)
T ss_pred CCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCCCceeeEEEEecccccccccccccccccEEEEEEEecC---CC
Confidence 3467999999999999999999888841 12567789999999999999999999999999999984 45
Q ss_pred eEEeccc
Q 000173 1534 ISLGMKS 1540 (1935)
Q Consensus 1534 i~lslK~ 1540 (1935)
+.||++.
T Consensus 136 ~~Lst~~ 142 (188)
T COG1096 136 IQLSTKG 142 (188)
T ss_pred eEEEecC
Confidence 7777765
|
|
| >cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0074 Score=58.77 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=50.7
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCc-----------cccCCCCcEEEEEEEEEeCCC
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP-----------EKEFPIGKLVAGRVLSVEPLS 1440 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~-----------~~~f~~G~~V~~kVl~vd~~~ 1440 (1935)
.|+++.|.|+++++.|+||.+| .+++|++...+.+++..+| ...+.+|+.|++||+.+..+.
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~G-pl~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~ 73 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVG-PLSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDA 73 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEc-CceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEcc
Confidence 4899999999999999999998 6889999988877655444 234678999999998886543
|
RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination. |
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.024 Score=59.31 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcC----CCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcC
Q 000173 1746 VVKVFQRALQYC----DPKKVHLALLGLYERT----EQNKLADELLYKMIKKFKHS---------CKVWLRRVQRLLKQQ 1808 (1935)
Q Consensus 1746 a~~vferAl~~~----~~~~v~~~l~~i~~~~----~~~~~A~el~~~~~k~~~~~---------~~vw~~~~~~l~~~~ 1808 (1935)
.++.|+..+... ++..+|..++.-..++ +.......++++++..|... ..+|+.|+. .
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~-----~ 78 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD-----L 78 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT-----T
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH-----H
Confidence 344555555433 2346666655533332 34455555666666555322 345555554 2
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al 1856 (1935)
...++++|+.+....=...+..+|..||.++...|++++|.++|+.++
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 235566666665554445555666666666666666666666666543
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions [] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0047 Score=58.71 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=43.3
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecC-----------------ceeEEeeccccCcccccC--cccccCCCCEEEEEEEEE
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENT-----------------NLVGLCHVSELSEDHVDN--IETIYRAGEKVKVKILKV 1527 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~-----------------~v~Gl~h~sels~~~~~~--~~~~~~~Gd~V~~~Il~i 1527 (1935)
++|++|.|+|+++++.-+++.|--- ...|++|.+++.....+. +.+.|++||.|+|+|+++
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 6899999999999999888887421 568999999987665543 689999999999999974
|
The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.032 Score=57.69 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CHHHHHH
Q 000173 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----KKVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLR 1799 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~----~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~---~~~vw~~ 1799 (1935)
+|+.+...+-..| ..++|...|++|+..... ...++.++..|...|++++|..++++++..||+ +..++..
T Consensus 3 ~~~~~A~a~d~~G--~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLG--REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4555556666777 447777777777775432 267777777777777777777777777777766 6666666
Q ss_pred HHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1800 RVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1800 ~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
++..+... +.++|.+.+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666 67776666655553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.036 Score=58.41 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH-HHHHHHHHH
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTAIL 1838 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~---~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~-~~~~~~a~l 1838 (1935)
+.-+.-..+.++|.+|.+.|+.+..+|| -...+-+.++..++.. ++++|...++|-++.+|.+..+ -+++..|..
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3334455677888888888888888886 3355556666667777 8888888888888888887543 344455544
Q ss_pred HHHcCC---------------HHHHHHHHHHHHHhCCCCH
Q 000173 1839 EFKNGV---------------ADRGRSMFEGILSEYPKRT 1863 (1935)
Q Consensus 1839 e~~~g~---------------~e~Ar~ife~al~~~Pk~~ 1863 (1935)
++.... ...|...|+++++.+|++.
T Consensus 94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 444433 6667777777777777754
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.075 Score=58.58 Aligned_cols=124 Identities=12% Similarity=-0.022 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000173 1724 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1802 (1935)
Q Consensus 1724 kl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~ 1802 (1935)
|..+......++-..| --.-||--|.+|+...|.. .++.-++-.+...|+++.|.+.|...+...|...-..++.+-
T Consensus 64 RA~l~fERGvlYDSlG--L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 64 RAQLLFERGVLYDSLG--LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHhcchhhhhh--HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 3334444444455556 3367888899999999886 777777777788999999999999999988877777777666
Q ss_pred HHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1803 RLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1852 (1935)
Q Consensus 1803 ~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~if 1852 (1935)
.+.-. ++.-|.+-|..--+..|++..-.+|. .+-.+.-+|..|++-+
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL---Yl~E~k~dP~~A~tnL 189 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL---YLNEQKLDPKQAKTNL 189 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHH---HHHHhhCCHHHHHHHH
Confidence 66656 88888888888778887774333443 3333445677776543
|
|
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.011 Score=73.16 Aligned_cols=157 Identities=17% Similarity=0.274 Sum_probs=105.7
Q ss_pred ccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000173 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1935)
Q Consensus 754 ~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~ 833 (1935)
.+++++..|..++|.|.++..||+||++...+.||+|.+.++.. ..|.+|+.+-+.|..+.++++.+.+-....
T Consensus 115 c~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~~ 188 (715)
T COG1107 115 CTMEDVEAGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVGL 188 (715)
T ss_pred cchhhcccceeeeccccchhhhcceeecChhhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecCC
Confidence 46788999999999999999999999999999999999999852 248999999999999999888887766554
Q ss_pred ccCCCCchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEE--EEEEEEeecce--eEEEeccCCceeEEEeeeec
Q 000173 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI--EGKVHESNDFG--VVVSFEEHSDVYGFITHHQL 909 (1935)
Q Consensus 834 ~~~~~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v--~g~V~~~~~~g--~~v~~~~~~~v~g~i~~~~l 909 (1935)
.... +.+.-.++. -..... +.+ .+|+.| +|+|+.++.++ -++++.+. +|+++..-+
T Consensus 189 ~~Y~-----------~~~~~ke~~----r~~i~~-id~-~ig~tV~I~GeV~qikqT~GPTVFtltDe---tg~i~aAAF 248 (715)
T COG1107 189 DRYR-----------EVQVEKELP----RTLIDD-LDE-MIGKTVRIEGEVTQIKQTSGPTVFTLTDE---TGAIWAAAF 248 (715)
T ss_pred ccch-----------hhhhhhhcc----cccHHH-HHh-hcCceEEEEEEEEEEEEcCCCEEEEEecC---CCceehhhh
Confidence 3211 000000000 000000 222 577665 58999988664 35777753 455555444
Q ss_pred CC--c----cccCCCeEEEEEEEeeccccEEEEe
Q 000173 910 AG--A----TVESGSVIQAAILDVAKAERLVDLS 937 (1935)
Q Consensus 910 s~--~----~~~~G~~v~~~vl~~~~~~~~v~ls 937 (1935)
.+ . .+++|+-|... =.++...+.+.+-
T Consensus 249 e~aGvRAyP~IevGdiV~Vi-G~V~~r~g~lQiE 281 (715)
T COG1107 249 EEAGVRAYPEIEVGDIVEVI-GEVTRRDGRLQIE 281 (715)
T ss_pred ccCCcccCCCCCCCceEEEE-EEEeecCCcEEEe
Confidence 32 1 57889888643 3345555655543
|
|
| >COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.012 Score=66.20 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=65.5
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc----cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY----VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~----~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~ 1450 (1935)
++||.|-|+|..+...+-.|+|+.-..|.++++++.+.. ..+++..|.+||.|.|+|..+|+ ++.+.|++|..
T Consensus 63 ~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~-~~~~~L~~k~~ 139 (239)
T COG1097 63 EVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDFLRRKFENAEKDLRPFLNVGDLVYAKVVDVDR-DGEVELTLKDE 139 (239)
T ss_pred CCCCEEEEEEEEEcccceEEEcCCccceEeehhhhhcccccccccccccccccCCEEEEEEEEccC-CCceEEEeecC
Confidence 589999999999999999999998899999999996654 35788999999999999999995 88999999653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.31 Score=55.95 Aligned_cols=183 Identities=11% Similarity=0.087 Sum_probs=123.6
Q ss_pred CCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--
Q 000173 1684 NSSFVWIK-YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-- 1760 (1935)
Q Consensus 1684 ~s~~lW~~-y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-- 1760 (1935)
++-..|.- -+.+++..++++.|.....+.. .+.. --+++. ...+.. ..+-|++..+++.+..+..
T Consensus 105 ~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-~lE~----~Al~Vq-----I~lk~~--r~d~A~~~lk~mq~ided~tL 172 (299)
T KOG3081|consen 105 GSNLIDLLLAAIIYMHDGDFDEALKALHLGE-NLEA----AALNVQ-----ILLKMH--RFDLAEKELKKMQQIDEDATL 172 (299)
T ss_pred chhHHHHHHhhHHhhcCCChHHHHHHHhccc-hHHH----HHHHHH-----HHHHHH--HHHHHHHHHHHHHccchHHHH
Confidence 33334444 4455688899999988777622 2210 011111 223334 3477888888887776653
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1761 -KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1761 -~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
++-.+|+.+..-.+++.+|.-+|+.+..+++..+.+....+.+.+.+ ++++|..+++.||...++. +.+..+..-+
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--petL~Nliv~ 250 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD--PETLANLIVL 250 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC--HHHHHHHHHH
Confidence 34455555556667899999999999999999999999999999999 9999999999999988776 5888888887
Q ss_pred HHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1839 EFKNGVA-DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1839 e~~~g~~-e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
-...|.. +--...+.++...+|.. .|.. +..+..+=|+|++.
T Consensus 251 a~~~Gkd~~~~~r~l~QLk~~~p~h--~~vk---------~~~ekeaeFDrl~~ 293 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQLKLSHPEH--PFVK---------HLNEKEAEFDRLVL 293 (299)
T ss_pred HHHhCCChHHHHHHHHHHHhcCCcc--hHHH---------HHHHHHHHHHHHHH
Confidence 7777754 44445566666677775 3332 23344455666654
|
|
| >PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.011 Score=65.22 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=61.3
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc------------cCcccccCCCCEEEEEEEEEecCC-
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV------------DNIETIYRAGEKVKVKILKVDKEK- 1531 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~------------~~~~~~~~~Gd~V~~~Il~id~~~- 1531 (1935)
..-.|+++.|.|+++.++|+||.+++ +++++|.+.+.++.. ++-...+..|+.|+++|+.+..+.
T Consensus 78 rPf~gEVv~g~V~~v~~~G~~v~~Gp--~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~ 155 (176)
T PTZ00162 78 KPFKDEVLDAIVTDVNKLGFFAQAGP--LKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDAS 155 (176)
T ss_pred ecCCCCEEEEEEEEEecceEEEEeeC--eEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCC
Confidence 34579999999999999999999976 779999999975421 112357899999999998876443
Q ss_pred -CeeEEeccccccCC
Q 000173 1532 -RRISLGMKSSYFKN 1545 (1935)
Q Consensus 1532 -~ri~lslK~~~~~~ 1545 (1935)
.++-.+||..|.+.
T Consensus 156 ~~~~i~T~~~~~LG~ 170 (176)
T PTZ00162 156 NLFAIATINSDYLGP 170 (176)
T ss_pred CcEEEEEecCCCcCc
Confidence 34566888877654
|
|
| >KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0023 Score=71.38 Aligned_cols=75 Identities=29% Similarity=0.528 Sum_probs=69.9
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEec-CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~-~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
..++++|-+.|+.|.+-|+||.|-. .|+.|++-.||||..++..+.++.++|-.--|.|+.+|.++|-|.||.+.
T Consensus 14 Pev~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrr 89 (304)
T KOG2916|consen 14 PEVEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRR 89 (304)
T ss_pred CCcccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhcc
Confidence 4689999999999999999999963 38999999999999999999999999999999999999999999999766
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.044 Score=59.03 Aligned_cols=96 Identities=11% Similarity=-0.029 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
++--.+++.-.-+.| ..+.|+.+|+-.+.+.+.+ +.|+.|+.++...++|++|..+|..+.....+++...+..+.+
T Consensus 37 le~iY~~Ay~~y~~G--k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 37 MDGLYAHAYEFYNQG--RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 444555665557788 5599999999999998875 9999999999999999999999999998888899999999999
Q ss_pred HHHc-CHHHHHHHHHHHHHh
Q 000173 1804 LLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~ 1822 (1935)
++.. +.+.|+..|+-++..
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhC
Confidence 9999 999999999999984
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.35 Score=52.43 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIYL 1870 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~~dlw~~ya 1870 (1935)
..-.++++..+.+. ++.+|+..|+.++.-.=.+ ...+....|+..+..+++..|.+.+|.+.+.+|. ..|--..|+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 34456778888888 9999999999998754333 3689999999999999999999999999999986 466778889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000173 1871 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1871 ~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e 1917 (1935)
..+-..|.+..|++-||.+++ .+|... --..|..|..++|...
T Consensus 168 R~laa~g~~a~Aesafe~a~~--~ypg~~--ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAIS--YYPGPQ--ARIYYAEMLAKQGRLR 210 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHH--hCCCHH--HHHHHHHHHHHhcchh
Confidence 999999999999999999999 665443 3556777777788443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.045 Score=55.53 Aligned_cols=90 Identities=19% Similarity=0.078 Sum_probs=55.5
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC--ChHHHHHHHHHHHHHcCCHH
Q 000173 1770 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1770 ~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~--~~~~~~~~~a~le~~~g~~e 1846 (1935)
....++.+.|.+.|.+++...|..+.+|.+.++.+.-+ +.++|.+-+.+|+..-... .....+.+.+.+|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 34556666666666666666666666666666666666 6666666666666654322 22355666666666666666
Q ss_pred HHHHHHHHHHHhC
Q 000173 1847 RGRSMFEGILSEY 1859 (1935)
Q Consensus 1847 ~Ar~ife~al~~~ 1859 (1935)
.||+-|+.+-+.-
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 6666666665543
|
|
| >PRK12328 nusA transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0061 Score=73.83 Aligned_cols=123 Identities=20% Similarity=0.273 Sum_probs=86.4
Q ss_pred ccccccCCCeEeeEEEeecCCCeEEEeccchhcchhccC--Ccccccc--CCCCEEEEEEEEEecC-eEEEEECCCeEEE
Q 000173 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL--PSDASHI--HPNSVVHGYVCNIIET-GCFVRFLGRLTGF 788 (1935)
Q Consensus 714 ~~~~~k~G~~l~~vl~~d~~~~~i~ls~K~~l~~~~~~~--~~~~~~~--~~G~~~~G~V~~i~~~-G~fV~f~~gl~Gl 788 (1935)
+...+++||.+..-+..+.-++...-++|+.+...-..+ -.-|+++ +.|+.+.|+|.++... ++||.+ |+..|+
T Consensus 87 i~~~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er~~i~~ey~~~~Geiv~g~V~r~~~~~~i~vdl-g~~ea~ 165 (374)
T PRK12328 87 IDPSVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLEESIFEKYKKKVGKIVFGTVVRVDNEENTFIEI-DEIRAV 165 (374)
T ss_pred hCCCCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEEEEEecCCCEEEEc-CCeEEE
Confidence 344678999998433333334445566777773322211 0113333 4799999999999864 599999 689999
Q ss_pred eeCCccCcccccCcccCccCCCEEEEEEEEeeCCCC---eEEEeecccccCCCCchhhHHHHHHH
Q 000173 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG---RITLSLKQSCCSSTDASFMQEHFLLE 850 (1935)
Q Consensus 789 v~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~---rl~LSlk~~~~~~~d~~~i~~~l~~~ 850 (1935)
+|+++.. |.+.|++||.++|.|.+|+...+ .+.||. +++.|+..+|..+
T Consensus 166 LP~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSR-------t~p~~v~~Lfe~E 217 (374)
T PRK12328 166 LPMKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSR-------TSPKFLEALLELE 217 (374)
T ss_pred eCHHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEc-------CCHHHHHHHHHHh
Confidence 9998774 56789999999999999998765 677775 4556777777654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.4 Score=53.06 Aligned_cols=214 Identities=14% Similarity=0.070 Sum_probs=153.8
Q ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccchhhHHHH-HHHHHHHHHHcCCCCHHHHH
Q 000173 1670 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNI-WVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1670 ~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~-i~~~ee~Ekl~l-W~ayl~le~~~g~~~~e~a~ 1747 (1935)
.++..-+++-..-|.-.-.|...+....+.|+.+.|..+.+..... +-.+...|+... .+.--..+.... +...|+
T Consensus 172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda--dp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA--DPASAR 249 (531)
T ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC--ChHHHH
Confidence 3344445565666888888888888888888999888887665542 222233344322 222222223334 458899
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHH--HHhCC
Q 000173 1748 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRA--LLSLP 1824 (1935)
Q Consensus 1748 ~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ra--lk~~p 1824 (1935)
.....|+++.|.. -.-...+..|.+.++.-++-.+++++-|.+| ++.+|..|...-- -+.+..-++|+ |.++.
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~lY~~ar~---gdta~dRlkRa~~L~slk 325 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIALLYVRARS---GDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHHHHHHhcC---CCcHHHHHHHHHHHHhcC
Confidence 9999999999887 5556667788899999999999999998875 7899988875322 23334444444 44442
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-GDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~-g~~e~ar~lferal~ 1891 (1935)
.++.+..+..++.-+..|++-.||.--|.+....|.- .++.-+++++.-. ||..++|..+-+++.
T Consensus 326 -~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 326 -PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 2335777788888889999999999999999998864 6777889988865 999999999999997
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.071 Score=56.23 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000173 1792 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1865 (1935)
Q Consensus 1792 ~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl 1865 (1935)
.++..|+.-|.-.++. ++++|.+.|+.....+|.... ..+.+.++..+++.++++.|...+++.++.+|.+..+
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3566677777778888 999999999999999988643 3788888888999999999999999999999998764
|
|
| >cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.025 Score=54.41 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=61.5
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~ 1450 (1935)
++||.|-|.|+.+...+-+|+|+....|.+|..++... .+..+..|++|+.|-|+|..+++ ....+||...+
T Consensus 5 ~~gD~VIG~V~~~~~~~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~-~~~~eLtc~~~ 76 (86)
T cd05790 5 AKGDHVIGIVVAKAGDFFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANR-DMEPELSCVDS 76 (86)
T ss_pred CCCCEEEEEEEEEcCCeEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCC-CCCeEEEEeCC
Confidence 58999999999999999999999889999999876543 45566789999999999999996 45688888664
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0051 Score=81.18 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=68.3
Q ss_pred cCCCCEEEEEEEEEecCe---EEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 759 IHPNSVVHGYVCNIIETG---CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G---~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
+..|..+.+.|++++..- |-|++.+|++||+|.+.+|+..+.+|...+++||+|.|+|+++|.++=...||++.+..
T Consensus 983 ~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~sdl 1062 (1299)
T KOG1856|consen 983 FYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTSDL 1062 (1299)
T ss_pred hccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhHHh
Confidence 668999999999997765 56789999999999999999999999999999999999999999877677788876643
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.058 Score=54.78 Aligned_cols=93 Identities=18% Similarity=0.091 Sum_probs=78.0
Q ss_pred HHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 000173 1801 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT----DLWSIYLDQEIR 1875 (1935)
Q Consensus 1801 ~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~----dlw~~ya~~e~k 1875 (1935)
+-.+.+. +.+.|.+.|.++|..+|.+ ..+|.+.||.+.-+|+.+.|..-+++++.....+. +.+.+-+-++..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3344455 9999999999999999998 48999999999999999999999999999865432 356666778899
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 000173 1876 LGDVDLIRGLFERAISLSLP 1895 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~ 1895 (1935)
.|+.+.||.-|++|-.+..+
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred hCchHHHHHhHHHHHHhCCH
Confidence 99999999999999984333
|
|
| >COG0557 VacB Exoribonuclease R [Transcription] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.011 Score=80.05 Aligned_cols=76 Identities=33% Similarity=0.625 Sum_probs=65.6
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCC
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1531 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~-----------~~~~~~~~~Gd~V~~~Il~id~~~ 1531 (1935)
+..-++|+.+.|+|.+|..||+||.|.+.+++|++|++.+.+++. +.....|+.||.|++++.+++...
T Consensus 617 ~m~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~ 696 (706)
T COG0557 617 YMKKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDE 696 (706)
T ss_pred HHHHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEcccc
Confidence 456689999999999999999999998877999999999986432 223457999999999999999999
Q ss_pred CeeEEec
Q 000173 1532 RRISLGM 1538 (1935)
Q Consensus 1532 ~ri~lsl 1538 (1935)
++|.+++
T Consensus 697 ~~i~~~~ 703 (706)
T COG0557 697 RKIDFEL 703 (706)
T ss_pred cceEEEe
Confidence 9998875
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.058 Score=62.58 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=79.6
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGD 1878 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~---~dlw~~ya~~e~k~g~ 1878 (1935)
++.. ++..|...|..-++.+|.... ..+++-+++.+|.+|++++|..+|.++.+.+|++ .|..++++..+..+|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 4444 899999999999999999632 4788889999999999999999999999999874 6889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 000173 1879 VDLIRGLFERAIS 1891 (1935)
Q Consensus 1879 ~e~ar~lferal~ 1891 (1935)
.+.|+..|+.++.
T Consensus 231 ~d~A~atl~qv~k 243 (262)
T COG1729 231 TDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999998
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.017 Score=48.46 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1802 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~ 1802 (1935)
..|..++..|.+.|++++|.++|+++++.+|++..+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788888888888888888888888888888888887764
|
|
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.024 Score=70.18 Aligned_cols=147 Identities=19% Similarity=0.268 Sum_probs=100.0
Q ss_pred hhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeC
Q 000173 578 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657 (1935)
Q Consensus 578 ~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~ 657 (1935)
.++++++.|...+|+|.++..+|+||++...++|++|.++++-. ..|.+|+.+-+.+..+-++++.+.+-....
T Consensus 115 c~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~~ 188 (715)
T COG1107 115 CTMEDVEAGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVGL 188 (715)
T ss_pred cchhhcccceeeeccccchhhhcceeecChhhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecCC
Confidence 56889999999999999999999999999999999999999742 258899999999999999988877766433
Q ss_pred CC----------CCcccccc--CCCCeE--EEEEEEEecC-cEEE-EEEecCceeEEEeccccCC-cccccccccccccC
Q 000173 658 PT----------RVSEDDLV--KLGSLV--SGVVDVVTPN-AVVV-YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 720 (1935)
Q Consensus 658 ~~----------~~~~~~~~--~~G~iv--~g~V~~v~~~-g~~V-~l~~~~~v~g~i~~~hLsd-~~~~~~~~~~~~k~ 720 (1935)
.. +-.....+ .+|+.| .|.|+.+.-. |-.| .+ -.-.|.++..-+-. -....| .+++
T Consensus 189 ~~Y~~~~~~ke~~r~~i~~id~~ig~tV~I~GeV~qikqT~GPTVFtl---tDetg~i~aAAFe~aGvRAyP----~Iev 261 (715)
T COG1107 189 DRYREVQVEKELPRTLIDDLDEMIGKTVRIEGEVTQIKQTSGPTVFTL---TDETGAIWAAAFEEAGVRAYP----EIEV 261 (715)
T ss_pred ccchhhhhhhhcccccHHHHHhhcCceEEEEEEEEEEEEcCCCEEEEE---ecCCCceehhhhccCCcccCC----CCCC
Confidence 20 00001111 478765 6888887443 4333 33 12345565554442 111111 4678
Q ss_pred CCeEeeEEEeecCCCeE
Q 000173 721 GYEFDQLLVLDNESSNL 737 (1935)
Q Consensus 721 G~~l~~vl~~d~~~~~i 737 (1935)
|+.+..+=.++...+++
T Consensus 262 GdiV~ViG~V~~r~g~l 278 (715)
T COG1107 262 GDIVEVIGEVTRRDGRL 278 (715)
T ss_pred CceEEEEEEEeecCCcE
Confidence 99998544455544444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.045 Score=67.79 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTAILEFKNGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~-~~~~~~a~le~~~g~~e~Ar~ife~al~~ 1858 (1935)
|+.+..|++++..|+.. ++++|...|++||...|.+... .+|++.|..|..+|+.++|...|++++..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677777777777777 7777777777777777665311 34777777777777777777777777765
|
|
| >TIGR02062 RNase_B exoribonuclease II | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.014 Score=77.78 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=58.1
Q ss_pred CCC--cEEEeEEEEEeeceEEEEEecCceeEEeeccccCc--c-cc--cC-----c--ccccCCCCEEEEEEEEEecCCC
Q 000173 1467 HVG--DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE--D-HV--DN-----I--ETIYRAGEKVKVKILKVDKEKR 1532 (1935)
Q Consensus 1467 ~~G--~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~--~-~~--~~-----~--~~~~~~Gd~V~~~Il~id~~~~ 1532 (1935)
++| +.+.|.|..+++||+||+|...++.|++|++.+.+ + +. .+ + ...|+.||.|+++|.++|.+++
T Consensus 554 ~~g~~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~ 633 (639)
T TIGR02062 554 KAAKNTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETR 633 (639)
T ss_pred ccCCCcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccC
Confidence 454 58999999999999999998778999999999965 2 21 11 1 1369999999999999999999
Q ss_pred eeEE
Q 000173 1533 RISL 1536 (1935)
Q Consensus 1533 ri~l 1536 (1935)
+|.+
T Consensus 634 ~i~~ 637 (639)
T TIGR02062 634 SIIA 637 (639)
T ss_pred cEee
Confidence 9876
|
This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.01 Score=45.79 Aligned_cols=32 Identities=34% Similarity=0.733 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1843 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1843 g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
|+.++||.+|++++...|.+.++|..|++++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 56788899999999988988889999988875
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.79 Score=54.35 Aligned_cols=178 Identities=15% Similarity=0.100 Sum_probs=117.9
Q ss_pred HHHHHHHhcccc-chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------C-------CHHHHHHHHHHHHHc
Q 000173 1708 IAERALQTINIR-EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------D-------PKKVHLALLGLYERT 1773 (1935)
Q Consensus 1708 v~erAl~~i~~~-ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~------~-------~~~v~~~l~~i~~~~ 1773 (1935)
...+|+..|..- +-......+.+|++++..+.. ..-|.+++++. | ...++..+++...-.
T Consensus 62 mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~------l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgl 135 (518)
T KOG1941|consen 62 MLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK------LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGL 135 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhH
Confidence 344444444422 222234577888888655441 22234444333 1 126777788888888
Q ss_pred CChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC----C----ChHHHHHHHHHH
Q 000173 1774 EQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR----H----KHIKFISQTAIL 1838 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~~~------~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~----~----~~~~~~~~~a~l 1838 (1935)
+.++++.+.|+.+.+.-.. ...++..++.++-+. ++++|.-+..+|...... . .+....+.+|-.
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVa 215 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVA 215 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHH
Confidence 8999999999999876422 245778888888888 999998888887665322 1 122445556666
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1839 EFKNGVADRGRSMFEGILSEY---PKR---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1839 e~~~g~~e~Ar~ife~al~~~---Pk~---~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+...|..-.|.+..+.+.+.. .++ ..-...++|++...||.|+|-.-||.|..
T Consensus 216 lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 216 LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 667888888888888876642 333 23467889999999999999999998875
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.66 Score=54.99 Aligned_cols=241 Identities=13% Similarity=0.046 Sum_probs=141.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHH
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKV 1762 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~v 1762 (1935)
++++..+...-++.++..+-...+.....+...........+.+.+.-++ ..+++.+.|+.|+++... .++
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls--~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLS--VFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHH--HHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 33344444444555555555444432222211111123333444455556 348899999999988543 299
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcC----CC------HHHHHHHHHHHHHc-CHHHHHHHHHHHHHh----CCCCC
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFK----HS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLS----LPRHK 1827 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~----~~------~~vw~~~~~~l~~~-~~e~A~~ll~ralk~----~p~~~ 1827 (1935)
+..+..+|.+..++++|.-...++..... .. .-+.++++..+..+ ..-.|.+.-+.|.+. -...-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 99999999999999999888888776542 11 22344555555555 666677666666553 32333
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH---HHHHHHHHHH--H---cCCHHHHHHHHHHHHhcC--C
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEY---PKRTD---LWSIYLDQEI--R---LGDVDLIRGLFERAISLS--L 1894 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~---Pk~~d---lw~~ya~~e~--k---~g~~e~ar~lferal~~~--~ 1894 (1935)
+...+..||..|...|+.|+|-.-||.++... .+++- +....+.-.. + .+.--+|..+-+|+++.. .
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I 324 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI 324 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence 45677889999999999999999999997653 22221 1111111111 1 111133555555655410 1
Q ss_pred Cchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1895 PPKK-MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1895 ~pk~-~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
-.|. ...+.-+...++...|..++-+.-+.||-+.++.
T Consensus 325 G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e 363 (518)
T KOG1941|consen 325 GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEE 363 (518)
T ss_pred hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 1111 1124555566777888888888888888887765
|
|
| >PRK05054 exoribonuclease II; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.022 Score=75.96 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=56.9
Q ss_pred CCEEEEEEEEEecCeEEEEEC-CCeEEEeeCCccCcc---cc--cC------c-ccCccCCCEEEEEEEEeeCCCCeEEE
Q 000173 762 NSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDG---QR--AD------L-SKTYYVGQSVRSNILDVNSETGRITL 828 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~-~gl~Glv~~s~ls~~---~~--~~------~-~~~f~~Gq~V~~~V~~vd~e~~rl~L 828 (1935)
|..+.|.|+.++++|+||++. .++.||+|.+.+.+. +. .+ - ...|++||.|+++|.++|.+++++.+
T Consensus 562 ~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~~i~~ 641 (644)
T PRK05054 562 DTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETRSIIA 641 (644)
T ss_pred CeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccCeEEE
Confidence 359999999999999999996 479999999999752 21 11 1 24699999999999999999999987
Q ss_pred ee
Q 000173 829 SL 830 (1935)
Q Consensus 829 Sl 830 (1935)
.+
T Consensus 642 ~~ 643 (644)
T PRK05054 642 RP 643 (644)
T ss_pred EE
Confidence 64
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.097 Score=57.06 Aligned_cols=75 Identities=17% Similarity=0.133 Sum_probs=50.8
Q ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1797 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1797 w~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
|.+.+..+++. ..+.|..-..+||...|... +++.+.|.+|.+...++.|.+-|.+++..+|.+..+.-..+.+.
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~--kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYE--KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 44455555666 66777777777777777663 66677777777777777777777777777777766555544443
|
|
| >PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.026 Score=62.43 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=55.1
Q ss_pred CCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccc-cc-----------cCCCCCCCCCCEEEEEEEEE--e--CCe
Q 000173 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF-EI-----------VKPGKKFKVGAELVFRVLGV--K--SKR 560 (1935)
Q Consensus 497 ~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~-~~-----------~~p~~~fkvG~~v~~rVL~v--~--~~~ 560 (1935)
-.|+++.|.|++++++|++|+++ .+++|||.+.|.+- .. .+-+..++.|+.|++||..+ + .-.
T Consensus 80 f~gEVv~g~V~~v~~~G~~v~~G-p~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~~~ 158 (176)
T PTZ00162 80 FKDEVLDAIVTDVNKLGFFAQAG-PLKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDASNLF 158 (176)
T ss_pred CCCCEEEEEEEEEecceEEEEee-CeEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCCCcE
Confidence 45999999999999999999996 78899999988632 11 01134688999999999998 2 235
Q ss_pred EEEEEecc
Q 000173 561 ITVTHKKT 568 (1935)
Q Consensus 561 i~ltlK~~ 568 (1935)
...|+|.-
T Consensus 159 ~i~T~~~~ 166 (176)
T PTZ00162 159 AIATINSD 166 (176)
T ss_pred EEEEecCC
Confidence 66677754
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.8 Score=57.24 Aligned_cols=218 Identities=13% Similarity=0.087 Sum_probs=134.8
Q ss_pred HHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-C-CHHHHHHHHHHHHHcC
Q 000173 1697 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-D-PKKVHLALLGLYERTE 1774 (1935)
Q Consensus 1697 l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~-~-~~~v~~~l~~i~~~~~ 1774 (1935)
+..+++.+|..-.++.++..|... ...+.-+|.- .++|.. +.|..+++ |+..- + .......+-.+|.+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~---~a~vLkaLsl--~r~gk~--~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL---YAKVLKALSL--FRLGKG--DEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH---HHHHHHHHHH--HHhcCc--hhHHHHHh-hhccCCCCchHHHHHHHHHHHHHh
Confidence 345677888888888888877422 2233334333 466643 55664444 33322 2 2356666777999999
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC---------
Q 000173 1775 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV--------- 1844 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~--------- 1844 (1935)
++++|..+|++++.+||. .+..+.|-..+.+. .+.+-+++--+.-+.+|++.+ -+|....-.....-.
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y-yfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY-YFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-hHHHHHHHHHHhccCCcccccchh
Confidence 999999999999999997 77666666666666 554444444444457788764 566655544432222
Q ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1845 ADRGRSMFEGILSEYPK--RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYV 1922 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~Pk--~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v 1922 (1935)
..-|+.++++.+....+ ...=..-|......+|++++|..++.+-+...+++-+. .+-++-+++....+...+.-++
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~-~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANL-YLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHhcChHHHHHH
Confidence 34577788887766522 12224556677778889999999986666545555444 3444555555555555544433
Q ss_pred HHH
Q 000173 1923 KQK 1925 (1935)
Q Consensus 1923 ~~r 1925 (1935)
..|
T Consensus 249 ~~~ 251 (932)
T KOG2053|consen 249 SSR 251 (932)
T ss_pred HHH
Confidence 333
|
|
| >KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.0096 Score=78.73 Aligned_cols=80 Identities=29% Similarity=0.358 Sum_probs=72.8
Q ss_pred ccCCCCCEEEEEEEEEeece---EEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000173 1374 EDLSPNMIVQGYVKNVTSKG---CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G---~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~ 1450 (1935)
+.+.+|.+|.+.|++|+..- +-|.+..|++|+++.+++|+..+.+|...+++||.|.|+|+++|.++-.+.||+|.+
T Consensus 981 et~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~s 1060 (1299)
T KOG1856|consen 981 ETFYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTS 1060 (1299)
T ss_pred hHhccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhH
Confidence 34789999999999997654 567899999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 000173 1451 DSR 1453 (1935)
Q Consensus 1451 ~~~ 1453 (1935)
...
T Consensus 1061 dlk 1063 (1299)
T KOG1856|consen 1061 DLK 1063 (1299)
T ss_pred Hhh
Confidence 754
|
|
| >PRK12328 nusA transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.033 Score=67.71 Aligned_cols=107 Identities=19% Similarity=0.273 Sum_probs=75.9
Q ss_pred CCCCCCEEEEEEEEEe-CCeEEEEEecccccc-----hhhHHhhhhhcCCCcEEEEEEEEEec-ceEEEEEcCCeEEEec
Q 000173 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKS-----KLAILSSYAEATDRLITHGWITKIEK-HGCFVRFYNGVQGFAP 614 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v~-~~~i~ltlK~~l~~~-----~~~~~~~~~~~~~G~~~~g~V~~i~~-~G~~V~~~~~v~g~vp 614 (1935)
.+++|+.+..-+---+ .+...-|.|+.+... ...++..|.+ +.|+++.|+|.++.. .++||++ |++.|++|
T Consensus 90 ~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er~~i~~ey~~-~~Geiv~g~V~r~~~~~~i~vdl-g~~ea~LP 167 (374)
T PRK12328 90 SVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLEESIFEKYKK-KVGKIVFGTVVRVDNEENTFIEI-DEIRAVLP 167 (374)
T ss_pred CCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEecCCCEEEEc-CCeEEEeC
Confidence 5889999987553222 223333444444221 1122333433 579999999999986 4699999 68999999
Q ss_pred CcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCC---EEEEEEee
Q 000173 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR---RINLSFMM 656 (1935)
Q Consensus 615 ~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~---ri~lS~k~ 656 (1935)
.++.. |.+.|++|+.++|.|.+++...+ .+.||...
T Consensus 168 ~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSRt~ 206 (374)
T PRK12328 168 MKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSRTS 206 (374)
T ss_pred HHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEcCC
Confidence 99884 56789999999999999998765 78888743
|
|
| >PF13509 S1_2: S1 domain; PDB: 3GO5_A | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.039 Score=49.80 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=36.4
Q ss_pred CCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEe
Q 000173 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1935)
Q Consensus 585 ~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k 655 (1935)
.|++...+|..+.++|+|++..++-.-|+|.+++. ..+++|+.|.|.|.. |. ++|+.+|++
T Consensus 1 iG~~~~L~V~~~~~~g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~VFvY~-D~-~~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEFGYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEVFVYL-DK-EGRLVATTK 61 (61)
T ss_dssp --------EEEE-SSEEEEEETT-EEEEEEGGG--------------TTSEEEEEEEE--T-TS-EEEE--
T ss_pred CCCCcceEEEEEeCCEEEEECCCCCEEEechHHcC--------CCCCCCCEEEEEEEE-CC-CCCEEEecC
Confidence 37888899999999999999877799999999985 247899999999875 44 458888864
|
|
| >TIGR00757 RNaseEG ribonuclease, Rne/Rng family | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.021 Score=71.60 Aligned_cols=63 Identities=24% Similarity=0.408 Sum_probs=53.1
Q ss_pred CCCCCcEEEeEEEEEeec--eEEEEEecCceeEEeeccccCcc------------cccCcccccCCCCEEEEEEEEEe
Q 000173 1465 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSED------------HVDNIETIYRAGEKVKVKILKVD 1528 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~--G~FV~l~~~~v~Gl~h~sels~~------------~~~~~~~~~~~Gd~V~~~Il~id 1528 (1935)
...+|++|.|+|+++.++ |+||.|+. +-.||+|++++.+. ...++.+.+++||.|.|.|++-.
T Consensus 22 ~~~vGnIY~GrV~~i~p~l~aAFVdiG~-~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~Ke~ 98 (414)
T TIGR00757 22 RQLKGNIYKGRVTRILPSLQAAFVDIGL-EKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVKEP 98 (414)
T ss_pred cCCCCCEEEEEEeeecCCCceEEEEcCC-CceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEeeCC
Confidence 457899999999999999 99999975 78999999998653 23345668999999999999843
|
The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. |
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.13 Score=53.48 Aligned_cols=106 Identities=15% Similarity=0.235 Sum_probs=68.3
Q ss_pred HHHHHHHH-HhCCCCChHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCC
Q 000173 1813 QAVVQRAL-LSLPRHKHIKFISQTAILEFK---NG-VADRGRSMFEGILSEY---------PKRTDLWSIYLDQEIRLGD 1878 (1935)
Q Consensus 1813 ~~ll~ral-k~~p~~~~~~~~~~~a~le~~---~g-~~e~Ar~ife~al~~~---------Pk~~dlw~~ya~~e~k~g~ 1878 (1935)
++.|+..+ .....+....+|..|..+... .| .-..-..++|++++.+ |.-..+|..|+++.
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~----- 79 (125)
T smart00777 5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC----- 79 (125)
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc-----
Confidence 44444444 323333335566666555442 22 2223345555555443 33345899999874
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1879 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1925 (1935)
Q Consensus 1879 ~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~r 1925 (1935)
+..+.+|..+.....-.+.+ .+|..|..+.+..|+...|..||++
T Consensus 80 -~dp~~if~~L~~~~IG~~~A-lfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 -DEPRELFQFLYSKGIGTKLA-LFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred -CCHHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 33678888888877776777 7999999999999999999999875
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.16 Score=57.53 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=75.6
Q ss_pred CCCCCCEEEEEEEEE---eCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCccc
Q 000173 542 KFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v---~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~ 618 (1935)
.|..|+++.+.|... ..+.+.+ - |.-..|-. ++|+++.|.|..+...|..|++.+...|++|.|++
T Consensus 29 ty~~~~~iyssv~G~~~~~~~~v~V--I--------pl~g~YiP-~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~ 97 (239)
T COG1097 29 TYFEGGKIYSSVVGLLDVKGKLVRV--I--------PLEGRYIP-EVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDF 97 (239)
T ss_pred cEecCCEEEEEEEeEEEEeCCEEEE--E--------eCCCcccC-CCCCEEEEEEEEEcccceEEEcCCccceEeehhhh
Confidence 456778888877766 2233221 1 11122321 57999999999999999999998889999999999
Q ss_pred CCCC----CCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEee
Q 000173 619 GLDP----GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1935)
Q Consensus 619 ~~~~----~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~ 656 (1935)
-... ..+.+..|.+|+.|.|+|..+|+. ....|+++.
T Consensus 98 ~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~~-~~~~L~~k~ 138 (239)
T COG1097 98 LRRKFENAEKDLRPFLNVGDLVYAKVVDVDRD-GEVELTLKD 138 (239)
T ss_pred hcccccccccccccccccCCEEEEEEEEccCC-CceEEEeec
Confidence 3322 246667899999999999999964 677787754
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.47 Score=54.49 Aligned_cols=161 Identities=12% Similarity=0.087 Sum_probs=101.6
Q ss_pred HHHHHHH-HHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000173 1727 IWVAYFN-LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1805 (1935)
Q Consensus 1727 lW~ayl~-le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~ 1805 (1935)
+|.-... ++..-+. .+.|.....+ ....+.+.--..|+.+..+++.|....++|.... .-.+...+|+.+.
T Consensus 109 i~~l~aa~i~~~~~~--~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv 180 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGD--FDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWV 180 (299)
T ss_pred HHHHHhhHHhhcCCC--hHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHH
Confidence 5543332 2344443 3555544443 2233444444456677788888888888887654 2222333333333
Q ss_pred Hc-----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000173 1806 KQ-----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1880 (1935)
Q Consensus 1806 ~~-----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e 1880 (1935)
.. +++.|.-+|+.+...+|.. +.+....|.+++.+|++++|..+++.+|..+++.++.....+-.-.-.|...
T Consensus 181 ~la~ggek~qdAfyifeE~s~k~~~T--~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 181 KLATGGEKIQDAFYIFEELSEKTPPT--PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred HHhccchhhhhHHHHHHHHhcccCCC--hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence 22 7888888888888866544 4778888888888999999999999999999998888777777766666554
Q ss_pred H-HHHHHHHHHhcCCCchhH
Q 000173 1881 L-IRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1881 ~-ar~lferal~~~~~pk~~ 1899 (1935)
. ..+...+... ..|+..
T Consensus 259 ~~~~r~l~QLk~--~~p~h~ 276 (299)
T KOG3081|consen 259 EVTERNLSQLKL--SHPEHP 276 (299)
T ss_pred HHHHHHHHHHHh--cCCcch
Confidence 4 3334444333 555543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.42 Score=55.10 Aligned_cols=140 Identities=11% Similarity=0.032 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH----HHHc-CHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR----LLKQ-QQEGVQAVVQ 1817 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~----l~~~-~~e~A~~ll~ 1817 (1935)
+.|...|++.++..|.. +..+-+++.+.+.+.+..|..+...+.. +..+.....+. .... ++-.++.+.+
T Consensus 61 ~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 61 ALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence 66778888888888775 4444556667778888888777666542 23333222221 1112 4444555443
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1818 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1818 ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..|...........|.+.++.|++|.|.+-|+.+++...-+.-+-+..+-.+++.++++.|..+...+++
T Consensus 137 ----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 137 ----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred ----hccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3465444678889999999999999999999999999888888888888888899999888766555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.088 Score=65.28 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV---WLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~v---w~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
..|+.++..|...++|++|...|++++...|++... |++++.+|..+ ++++|.+.|++|+..
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998854 99999999999 999999999999986
|
|
| >TIGR00757 RNaseEG ribonuclease, Rne/Rng family | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.032 Score=70.08 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=50.8
Q ss_pred CCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEECccCCCcc------------cCCccccCCCCcEEEEEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDGY------------VESPEKEFPIGKLVAGRVLS 1435 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~--G~fV~l~~~v~g~V~~s~lsd~~------------~~~~~~~f~~G~~V~~kVl~ 1435 (1935)
..+|+++.|+|+++.+. |+||+||.+..||+|++|+.+.+ .++..+.+++||.|.+.|+.
T Consensus 23 ~~vGnIY~GrV~~i~p~l~aAFVdiG~~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~K 96 (414)
T TIGR00757 23 QLKGNIYKGRVTRILPSLQAAFVDIGLEKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVK 96 (414)
T ss_pred CCCCCEEEEEEeeecCCCceEEEEcCCCceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEee
Confidence 45899999999999998 99999999999999999997632 23345568999999998865
|
The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.48 E-value=2 Score=48.62 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHc--CHHHHHHHHHHHHHhCCCCCh----
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKH---- 1828 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~------~~~vw~~~~~~l~~~--~~e~A~~ll~ralk~~p~~~~---- 1828 (1935)
+-|....+.|.+. +.++|.+.+++++.+|.+ ..+-+..++.+|... ++++|...|+.|-.-+...+.
T Consensus 75 t~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 75 TTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 4444445555443 666666666666665532 233344556655555 677777777777655433221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHH------HHHcCCHHHHHHHHHHHHh
Q 000173 1829 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-WSIYLDQ------EIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl-w~~ya~~------e~k~g~~e~ar~lferal~ 1891 (1935)
-+.+++.|++--..+++.+|..+||++.+..-.+.-+ |..-.-| ++-..|.-.++..++.-.+
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 2566666666667777777777777776665444333 3322211 1223454455555555544
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.94 Score=55.63 Aligned_cols=121 Identities=16% Similarity=0.128 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccc---cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-C-
Q 000173 1684 NSSFVWIKYMAFMLSMADVEKARSIAERALQT-INI---REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-C- 1757 (1935)
Q Consensus 1684 ~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~-i~~---~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~-~- 1757 (1935)
+++....--.+++...|++.+|.++.-+.--. -+. ..+--+-..|..+.-+..+.+.+ ..+.-.|.+|++. +
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y--~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY--QASSVLFLKALRNSCS 315 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH--HHHHHHHHHHHHHHHH
Confidence 55555556667778889999888776542210 000 00111235677777777778844 7788899999962 1
Q ss_pred -------C----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000173 1758 -------D----------PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1806 (1935)
Q Consensus 1758 -------~----------~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~ 1806 (1935)
+ ...+.+..+-.|...|+.-.|.+.|.++.+.|..++.+|++++++.+.
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1 117777788889999999999999999999999999999999998774
|
|
| >KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.017 Score=64.84 Aligned_cols=90 Identities=24% Similarity=0.315 Sum_probs=76.1
Q ss_pred CCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccCCC
Q 000173 761 PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838 (1935)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f~--~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~~~~ 838 (1935)
+++++-+.|.+|.+.|++|.+. |++.|++..|++|..++..++...++|-+=.|.|+.+|.+++=|-||.+...+ .
T Consensus 16 v~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrrVs~--e 93 (304)
T KOG2916|consen 16 VEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRRVSP--E 93 (304)
T ss_pred cccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhccCCH--H
Confidence 5889999999999999999975 79999999999999999999999999999999999999999999999987654 3
Q ss_pred CchhhHHHHHHHHH
Q 000173 839 DASFMQEHFLLEEK 852 (1935)
Q Consensus 839 d~~~i~~~l~~~~~ 852 (1935)
|..-+.+-|...++
T Consensus 94 d~~kC~Er~~ksK~ 107 (304)
T KOG2916|consen 94 DKEKCEERFAKSKL 107 (304)
T ss_pred HHHHHHHHHHHhHH
Confidence 33334444443333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.018 Score=45.25 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=31.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1675 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1707 (1935)
Q Consensus 1675 ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~ 1707 (1935)
|+++|..+|+++.+|.+|+.++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999973
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.38 E-value=8.1 Score=46.61 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=141.8
Q ss_pred HHcCCHHHHHHHHHHHHHhcccc--chhhHH-HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCC-------------
Q 000173 1697 LSMADVEKARSIAERALQTINIR--EENEKL-NIWVAYFNLENEYG-NPPEEAVVKVFQRALQYCDP------------- 1759 (1935)
Q Consensus 1697 l~~~e~dkAr~v~erAl~~i~~~--ee~Ekl-~lW~ayl~le~~~g-~~~~e~a~~vferAl~~~~~------------- 1759 (1935)
..+|+++.|...+.|+-...+.. +..+.+ .+.+....-....+ .+ +.|...++||..+.+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~--~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKY--EEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 46799999999999988754221 111221 33333333333444 44 8899999999988421
Q ss_pred --HHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC-CCChHHHH
Q 000173 1760 --KKVHLALLGLYERTEQN---KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP-RHKHIKFI 1832 (1935)
Q Consensus 1760 --~~v~~~l~~i~~~~~~~---~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p-~~~~~~~~ 1832 (1935)
..+...++..|...+.+ ++|.++.+.+-+.+++.+.++.....++.+. +.+.+.+.+.+++...+ ........
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 16667777788776654 4566677777788899999998888888888 99999999999999876 33334444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-----Hc---CC---HHHHHHHHHHHHh---cCCCc
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEI-----RL---GD---VDLIRGLFERAIS---LSLPP 1896 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~--~Pk~~dlw~~ya~~e~-----k~---g~---~e~ar~lferal~---~~~~p 1896 (1935)
.......... .+..|...+..++.. .|...+ |..-+-+.+ +. .+ ++.+..+++++-. ..+.+
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444444443 345566666666543 344433 544333322 11 12 3344455554332 23444
Q ss_pred hhHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1897 KKMK----FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1897 k~~k----~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
+.+. .+|++--..+ +.+++..|..-|+-|+.-
T Consensus 240 ~~~~a~~~LLW~~~~~~~-~~k~y~~A~~w~~~al~~ 275 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHY-KAKNYDEAIEWYELALHS 275 (278)
T ss_pred HHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHh
Confidence 3311 4688766544 578999999999988743
|
It is also involved in sporulation []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.11 Score=56.42 Aligned_cols=90 Identities=12% Similarity=-0.021 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-
Q 000173 1776 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG- 1843 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-----------~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g- 1843 (1935)
++.|++.++....+.|...+.+++++..|++. .+++|..-|+.||..+|... .++..+|..+..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHh
Confidence 46788888888888888888888888888765 24556677788888888773 77777777776543
Q ss_pred ---C-------HHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1844 ---V-------ADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1844 ---~-------~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+ +++|...|+++....|.+...+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 2 67777788888888898754443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions [] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.041 Score=52.44 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=40.8
Q ss_pred CCCCEEEEEEEEEeeceEEEEe------------------CCCcEEEEECccCCCcccC--CccccCCCCcEEEEEEEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIML------------------SRKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSV 1436 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l------------------~~~v~g~V~~s~lsd~~~~--~~~~~f~~G~~V~~kVl~v 1436 (1935)
++|++|.|+|+++++.-++++| .....|.++.+|+-..... ++.+.|++||.|.|+|+++
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 5899999999999998888754 2345789999987765544 3678999999999999874
|
The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I. |
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.21 Score=51.83 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1794 CKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE 1853 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife 1853 (1935)
.++|+.|+.+. +.++++|+-+...-=...+..+|..||.++...|++.+|..+|+
T Consensus 69 LkiWi~ya~~~-----~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 69 LKIWLKYADNC-----DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555555531 23445555555444344445666666666666666666666665
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.6 Score=52.43 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSE-YPKR---- 1862 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~--~~~~~~~~a~le~~~g~~e~Ar~ife~al~~-~Pk~---- 1862 (1935)
......|+.++....+. .++.|...+.++.+..+... .+.+...+|.+....|+.++|...++..+.. ..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 35678899999999999 99999999999988653321 3688999999999999999999999988872 1111
Q ss_pred -----------------------------HHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1863 -----------------------------TDLWSIYLDQEIRL------GDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1863 -----------------------------~dlw~~ya~~e~k~------g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
..++..++.+.... ++.+.+...|..++. +.|...+ .|..|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k-~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEK-AWHSWA 299 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHH-HHHHHH
Confidence 22466666666666 888999999999998 7777774 777787
Q ss_pred HHHHH
Q 000173 1908 EYEKS 1912 (1935)
Q Consensus 1908 ~~E~~ 1912 (1935)
.+..+
T Consensus 300 ~~~~~ 304 (352)
T PF02259_consen 300 LFNDK 304 (352)
T ss_pred HHHHH
Confidence 76544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13509 S1_2: S1 domain; PDB: 3GO5_A | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.051 Score=49.09 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=35.9
Q ss_pred CCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE-eCCeEEEEEe
Q 000173 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHK 566 (1935)
Q Consensus 498 ~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v-~~~~i~ltlK 566 (1935)
.|++.+.+|.++++.|++++.+++-+-++|..++. ..+++|++|.+ .++. ..+|+..|+|
T Consensus 1 iG~~~~L~V~~~~~~g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~V-FvY~D~~~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEFGYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEV-FVYLDKEGRLVATTK 61 (61)
T ss_dssp --------EEEE-SSEEEEEETT-EEEEEEGGG--------------TTSEEEE-EEEE-TTS-EEEE--
T ss_pred CCCCcceEEEEEeCCEEEEECCCCCEEEechHHcC--------CCCCCCCEEEE-EEEECCCCCEEEecC
Confidence 48899999999999999999987799999977653 35899999999 5566 5679988875
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=4.2 Score=47.22 Aligned_cols=157 Identities=13% Similarity=0.043 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~---~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
..|+.=+.-..+.|++++|.+.|+.+...+| ....+-+.++..+++. +++.|....+|-++.+|.+..+ -|..|.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHH
Confidence 4455555666789999999999999999886 4577778888888888 9999999999999999998654 233333
Q ss_pred HH--HH-----HcCCH---HHHHHHHHHHHHhCCCC---HH-------HH-------HHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1837 IL--EF-----KNGVA---DRGRSMFEGILSEYPKR---TD-------LW-------SIYLDQEIRLGDVDLIRGLFERA 1889 (1935)
Q Consensus 1837 ~l--e~-----~~g~~---e~Ar~ife~al~~~Pk~---~d-------lw-------~~ya~~e~k~g~~e~ar~lfera 1889 (1935)
.. .+ ...|. .+|..-|...++.+|+. .| +- +.-+.++.+.|.+..|..-|+++
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 32 22 12233 34566677889999985 11 11 22344556789999999999999
Q ss_pred HhcCCCch--hHHHHHHHHHHHHHHcCCHHHHH
Q 000173 1890 ISLSLPPK--KMKFLFKKYLEYEKSVGEEERIE 1920 (1935)
Q Consensus 1890 l~~~~~pk--~~k~l~~~yl~~E~~~G~~e~a~ 1920 (1935)
+.. +|. ....-...|.......|-.+.|.
T Consensus 194 ~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 194 LEN--YPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred Hhc--cccccchHHHHHHHHHHHHHhCChHHHH
Confidence 982 322 22223333444444466544433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.89 Score=50.52 Aligned_cols=161 Identities=16% Similarity=0.106 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1742 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
++++|.-.|+|. .+|-..|-..-|+--|..++.+.|..+.++.-++-++... +++.|.+.|...+
T Consensus 61 ~eeRA~l~fERG--------------vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 61 DEERAQLLFERG--------------VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 126 (297)
T ss_pred hHHHHHHHHHhc--------------chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence 456666666665 5666777788899999999999999999999999988888 9999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCCch
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD--LWSIYLDQEIRLGDVDLI-RGLFERAISLSLPPK 1897 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d--lw~~ya~~e~k~g~~e~a-r~lferal~~~~~pk 1897 (1935)
...|..+ -+..+.|...+--|++.-|..-|.+--+.+|+++- +|....... . ++..| .++.+|+-. ...
T Consensus 127 ELDp~y~--Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k--~-dP~~A~tnL~qR~~~--~d~- 198 (297)
T COG4785 127 ELDPTYN--YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK--L-DPKQAKTNLKQRAEK--SDK- 198 (297)
T ss_pred ccCCcch--HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh--C-CHHHHHHHHHHHHHh--ccH-
Confidence 9999986 45566666666678999999999999999999754 888755443 3 34444 456777665 432
Q ss_pred hHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHH
Q 000173 1898 KMKFLFKKYLE-YEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1898 ~~k~l~~~yl~-~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
..|-.+|- |. .|.. +.+.+++|+.+..
T Consensus 199 ---e~WG~~iV~~y--Lgki-S~e~l~~~~~a~a 226 (297)
T COG4785 199 ---EQWGWNIVEFY--LGKI-SEETLMERLKADA 226 (297)
T ss_pred ---hhhhHHHHHHH--Hhhc-cHHHHHHHHHhhc
Confidence 45655552 22 2322 2234555555543
|
|
| >cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.12 Score=49.94 Aligned_cols=71 Identities=17% Similarity=0.081 Sum_probs=57.6
Q ss_pred CCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE-eCCeEEEEEec
Q 000173 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKK 567 (1935)
Q Consensus 496 l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v-~~~~i~ltlK~ 567 (1935)
-.+|++|=|+|+.+......|+|+....|++|..++... ..+....+++|+-|-|||..+ ....+.||+..
T Consensus 4 P~~gD~VIG~V~~~~~~~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~~~~~eLtc~~ 75 (86)
T cd05790 4 PAKGDHVIGIVVAKAGDFFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANRDMEPELSCVD 75 (86)
T ss_pred CCCCCEEEEEEEEEcCCeEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCCCCCeEEEEeC
Confidence 367999999999999999999999888999998776432 223344699999999999999 45678888763
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.98 Score=51.46 Aligned_cols=204 Identities=13% Similarity=0.238 Sum_probs=124.8
Q ss_pred CCcHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchhhH-HHHHHHHHHHHHHcCC
Q 000173 1669 PRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENEK-LNIWVAYFNLENEYGN 1740 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~s----~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~---~ee~Ek-l~lW~ayl~le~~~g~ 1740 (1935)
.+|...|++.+...|.- ..+..+.+.....++++++-.+.|.+.|.-|.. +.-.|+ .|.-+.|+.-..+.+
T Consensus 44 ~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~- 122 (440)
T KOG1464|consen 44 KEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD- 122 (440)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH-
Confidence 34556677777666652 344566777788999999999988888763321 122222 355566665433322
Q ss_pred CCHHHHHHHHHHH---HhcCCCHHHHH----HHHHHHHHcCChHHHHHHHHHHHHhcC------------CCHHHHHHHH
Q 000173 1741 PPEEAVVKVFQRA---LQYCDPKKVHL----ALLGLYERTEQNKLADELLYKMIKKFK------------HSCKVWLRRV 1801 (1935)
Q Consensus 1741 ~~~e~a~~vferA---l~~~~~~~v~~----~l~~i~~~~~~~~~A~el~~~~~k~~~------------~~~~vw~~~~ 1801 (1935)
-+.+.|+-. |+-.....+|+ .++.+|...+.|.+...++..+-..+. +-..+|-.-+
T Consensus 123 ----LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 123 ----LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred ----HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 233333333 33223334554 567777666666555555544332221 2345565566
Q ss_pred HHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH--HHHHH
Q 000173 1802 QRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQ----TAILEFKNGVADRGRSMFEGILSEY-----PKRTD--LWSIY 1869 (1935)
Q Consensus 1802 ~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~----~a~le~~~g~~e~Ar~ife~al~~~-----Pk~~d--lw~~y 1869 (1935)
+.|-.+ +..+-..+|++||-.-..-.|+-+.-. =+.++++.|.++.|.+-|-.|+..+ |.|.. -+.++
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 667777 777778899999887655555432222 2346788999999999999999876 55544 37788
Q ss_pred HHHHHHcC
Q 000173 1870 LDQEIRLG 1877 (1935)
Q Consensus 1870 a~~e~k~g 1877 (1935)
+.|+++.|
T Consensus 279 ANMLmkS~ 286 (440)
T KOG1464|consen 279 ANMLMKSG 286 (440)
T ss_pred HHHHHHcC
Confidence 88888753
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.87 E-value=2.4 Score=53.96 Aligned_cols=151 Identities=17% Similarity=0.071 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH--------Hh--cC-CCHHHHHHHHHHHHHc-CHHHHHHHHHH----------
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMI--------KK--FK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQR---------- 1818 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~--------k~--~~-~~~~vw~~~~~~l~~~-~~e~A~~ll~r---------- 1818 (1935)
++|-..+++|++..++++|.++|.+.- .+ || .-.++-..++..+.+. +++.|...|-.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 778888889999999999999988631 22 23 1233334566666665 66666543322
Q ss_pred ---------HHHhCC----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1819 ---------ALLSLP----RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1885 (1935)
Q Consensus 1819 ---------alk~~p----~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~l 1885 (1935)
|+..+. +......|-..|+-|...|+++.|..+|-.+ ++....++|+-+.|..+.|..+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHH
Confidence 221111 0111134555677777788999999998775 6777788888899998888887
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1886 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1923 (1935)
Q Consensus 1886 feral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~ 1923 (1935)
-+.... |.....+|..-.+-..++|.+.+|+++|
T Consensus 814 a~e~~~----~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECHG----PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhcC----chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 776432 2222233333333334567666665554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.068 Score=50.72 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSE---YPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~---~Pk~----~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.++..+|.+++..|++++|.+.|+++++. .+.+ ...+..++..+...|++++|..+|++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57778888888888888888888888754 3322 23577778888888888888888888876
|
... |
| >COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.22 Score=54.15 Aligned_cols=104 Identities=19% Similarity=0.206 Sum_probs=74.4
Q ss_pred CCCCCCEEEEEEEEE---eCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEecceEEEEEcC----------C
Q 000173 542 KFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN----------G 608 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v---~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~----------~ 608 (1935)
.|..|..|.|-+..+ +.+....+.++... .+.-.++|+++-|.|+++....+.|++.+ -
T Consensus 26 t~~~~g~i~Aa~~G~~~~d~~n~~~~V~p~~~--------~~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~ 97 (188)
T COG1096 26 TYEEGGEIRAAATGVVRRDDKNRVISVKPGKK--------TPPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATS 97 (188)
T ss_pred eEeECCEEEEeecccEEEcccceEEEeccCCC--------CCCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCCC
Confidence 455566666666555 44555666554322 12224689999999999999999988752 1
Q ss_pred eEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEee
Q 000173 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1935)
Q Consensus 609 v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~ 656 (1935)
..|-+|.|+++.....+.++.|++|+.|+++|++.- ..+.||.+-
T Consensus 98 ~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~~~Lst~~ 142 (188)
T COG1096 98 GAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DPIQLSTKG 142 (188)
T ss_pred ceeeEEEEecccccccccccccccccEEEEEEEecC---CCeEEEecC
Confidence 457889999987777788899999999999999863 456677653
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.31 Score=53.18 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG----------VADRGRSMFEGILSEYPKRTDLWSIYLDQEI--- 1874 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g----------~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~--- 1874 (1935)
-++.|++.++.....+|.+ .+.+.+||..+..+. .+++|..=|+.+|..+|+..+....++..+.
T Consensus 6 ~FE~ark~aea~y~~nP~D--adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLD--ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3789999999999999988 588899888766432 3677888888999999999886444444443
Q ss_pred -HcCCH-------HHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1875 -RLGDV-------DLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1875 -k~g~~-------e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
-..+. ++|...|++|+. ..|.+. +|++-+++-
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne--~Y~ksLe~~ 123 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNE--LYRKSLEMA 123 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-H--HHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcH--HHHHHHHHH
Confidence 33444 445555555555 444443 555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.3 Score=56.39 Aligned_cols=186 Identities=12% Similarity=0.080 Sum_probs=94.8
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHH-HH---HHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000173 1678 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NI---WVAYFNLENEYGNPPEEAVVKVFQRA 1753 (1935)
Q Consensus 1678 ll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl-~l---W~ayl~le~~~g~~~~e~a~~vferA 1753 (1935)
.+..+|. +.+|.-++.+.+..-+++.|...|-|+-.-....- -.|+ .+ =+..+..-.-||++ |+|+++|-.|
T Consensus 685 fiEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~~q~aei~~~~g~f--eeaek~yld~ 760 (1189)
T KOG2041|consen 685 FIEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKEQQRAEISAFYGEF--EEAEKLYLDA 760 (1189)
T ss_pred HHhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHHHHhHhHhhhhcch--hHhhhhhhcc
Confidence 3345665 79999999999999999999988887653211100 0000 00 01222233346754 7777777555
Q ss_pred HhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1754 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1754 l~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~--~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
=...-.-.+ +.+.|++-...+++...-.-. ......|.+.+..+... ..+.|+++|..+-.
T Consensus 761 drrDLAiel-------r~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 761 DRRDLAIEL-------RKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred chhhhhHHH-------HHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 222111122 222233333333332211100 12345666677766666 77777776665411
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
...++..++...+++. +|.+....|.+..+.-..++|..+-|.-++|-..|-|
T Consensus 825 -~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred -hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1223333333333332 3444455566666666666666666666665555543
|
|
| >PRK12329 nusA transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.12 Score=63.69 Aligned_cols=107 Identities=13% Similarity=0.239 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEEEE--Ee-CCeEEEEEecccccc----hh-hHHhhhhhcCCCcEEEEEEEEEecceEEEEEc---C--C
Q 000173 542 KFKVGAELVFRVLG--VK-SKRITVTHKKTLVKS----KL-AILSSYAEATDRLITHGWITKIEKHGCFVRFY---N--G 608 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~--v~-~~~i~ltlK~~l~~~----~~-~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~---~--~ 608 (1935)
.+++|+.|...|-- .+ .+...-|.|+.+... .. -+...|.+ +.|.++.|+|.++...+++|++. | +
T Consensus 102 ~~~iGD~v~~~v~~~~~~fgRiAAq~aKQvi~Qkire~ER~~i~~ef~~-~~GeIV~G~V~r~e~~~viv~l~~~~g~~~ 180 (449)
T PRK12329 102 EAQLGDTVVLDVTPEQEDFGRMAAIQTKQVLAQKLRDQQRKMIQEEFQD-LEDTVLTARVLRFERQSVIMAVSSGFGQPE 180 (449)
T ss_pred CCcCCCEEEEecCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEcCCCEEEEecccCCCcc
Confidence 58899999876631 01 122222333322221 11 22334543 57999999999999999999983 4 3
Q ss_pred eEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCC---CEEEEEEe
Q 000173 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS---RRINLSFM 655 (1935)
Q Consensus 609 v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~---~ri~lS~k 655 (1935)
+.|++|.++. -|.+.|++|+.++|.|.+|+... -.+.||..
T Consensus 181 ~EaiLP~~Eq------ip~E~y~~Gdrika~i~~V~~~~~kGpqIilSRt 224 (449)
T PRK12329 181 VEAELPKREQ------LPNDNYRANATFKVFLKEVSEGPRRGPQLFVSRA 224 (449)
T ss_pred eEEEecHHHc------CCCCcCCCCCEEEEEEEEeecCCCCCCEEEEEcC
Confidence 9999999998 35678999999999999998763 46888864
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.3 Score=52.03 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=89.1
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++.+++...|..++...|+++.+-+.|+..++..|+.+.|..++... |......+.....+.+.+..+.... .
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~l~a~i~ll~qaa~~--~ 220 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHGLQAQIELLEQAAAT--P 220 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHHHHHHHHHHHHHhcC--C
Confidence 455888999999999999999999999999999999999999988754 3322222222222345555555431 1
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 000173 1745 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~ 1790 (1935)
. -..+++.+..+|. .+.-+.++..|...|+++.|.+.+-.++++.
T Consensus 221 ~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 E-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred C-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1 2346677777775 5999999999999999999999998888775
|
|
| >TIGR02062 RNase_B exoribonuclease II | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.079 Score=70.71 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=55.2
Q ss_pred CCEEEEEEEEEecCeEEEEE-CCCeEEEeeCCccCc--c-c--ccCc-------ccCccCCCEEEEEEEEeeCCCCeEEE
Q 000173 762 NSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVD--G-Q--RADL-------SKTYYVGQSVRSNILDVNSETGRITL 828 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f-~~gl~Glv~~s~ls~--~-~--~~~~-------~~~f~~Gq~V~~~V~~vd~e~~rl~L 828 (1935)
|..+.|.|+.++++|+||++ .+|+.||+|.+.+.+ + + ..+. ...|++||.|+++|.++|.+++++.+
T Consensus 558 ~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~~i~~ 637 (639)
T TIGR02062 558 NTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETRSIIA 637 (639)
T ss_pred CcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccCcEee
Confidence 45899999999999999998 568999999999975 2 2 1111 12599999999999999999988865
Q ss_pred e
Q 000173 829 S 829 (1935)
Q Consensus 829 S 829 (1935)
.
T Consensus 638 ~ 638 (639)
T TIGR02062 638 R 638 (639)
T ss_pred e
Confidence 3
|
This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.54 Score=50.65 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=76.1
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000173 1769 LYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1842 (1935)
Q Consensus 1769 i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1842 (1935)
.....++...+.+.+++++..|... ..-|.. ..+..|.... ..++..++..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~-----------~~r~~l~~~~--------~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVE-----------PERERLRELY--------LDALERLAEALLEA 75 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHH-----------HHHHHHHHHH--------HHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHH-----------HHHHHHHHHH--------HHHHHHHHHHHHhc
Confidence 3456678888889999998877321 112332 2233333332 35677788888899
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1843 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1843 g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
|++++|..++++++..+|-+..+|..++..+...|+...|...|+++..
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.7 Score=51.16 Aligned_cols=145 Identities=15% Similarity=0.046 Sum_probs=103.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHH---HHHHHHHcCC
Q 000173 1769 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQ---TAILEFKNGV 1844 (1935)
Q Consensus 1769 i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~---~a~le~~~g~ 1844 (1935)
-....+++.+|..+|..++...+.+..+-+.|+.+++.. +.+.|+.+|... |...+-+-|.. ...++.+...
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHHHHHHHHHHHHHhc
Confidence 445788999999999999998888899999999999999 999888887664 33322233333 2233334333
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000173 1845 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1919 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a 1919 (1935)
..+.- -+++.+..+|++.++-+.+++++...|+.+.|...+-..+..+....+- ..-+.++++-.-.|..+-+
T Consensus 219 ~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~-~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 219 TPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG-EARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc-HHHHHHHHHHHhcCCCCHH
Confidence 33332 3566678899999999999999999999999988887777754444433 4567777777777744433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.13 Score=48.82 Aligned_cols=28 Identities=14% Similarity=0.092 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIK 1788 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k 1788 (1935)
.+|..++.+|...+++++|.+.|++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566666666666666666666654
|
... |
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.074 Score=40.64 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q 000173 1879 VDLIRGLFERAIS 1891 (1935)
Q Consensus 1879 ~e~ar~lferal~ 1891 (1935)
+++||.+|+|.+.
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.08 E-value=2.5 Score=47.88 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHc
Q 000173 1742 PEEAVVKVFQRALQYCDP-------KKVHLALLGLYERT-EQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ 1807 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~-------~~v~~~l~~i~~~~-~~~~~A~el~~~~~k~~~~------~~~vw~~~~~~l~~~ 1807 (1935)
+.++|...+++|+++.-. -+.|+.++.+|+.- .+++.|...|+.+-.-|.. .-+.++..+.+-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 347788888888876532 16688899999876 8999999999999887742 244566677766666
Q ss_pred -CHHHHHHHHHHHHHhCCCCCh----H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1808 -QQEGVQAVVQRALLSLPRHKH----I-KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1808 -~~e~A~~ll~ralk~~p~~~~----~-~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
++.+|.++|+.....--.+.. + ..+.+.+..++-..|.-.++..+|+....+|...+
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 899999999887665433321 1 23444455556668999999999999999998665
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.1 Score=51.02 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHc-CHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-----KVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQE 1810 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-----~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------~~~~vw~~~~~~l~~~-~~e 1810 (1935)
.++|..-|++.++.-+.. .....++.++.+.+++++..+.|..++.-.. .+.+.-.....+.... +.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 366777777777766543 6666777888888999888888888774321 2344444555554444 667
Q ss_pred HHHHHHHHHHHhCCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HH---HHHHHHHHHH
Q 000173 1811 GVQAVVQRALLSLPRHKHIKFI----SQTAILEFKNGVADRGRSMFEGILSEYPKR---------TD---LWSIYLDQEI 1874 (1935)
Q Consensus 1811 ~A~~ll~ralk~~p~~~~~~~~----~~~a~le~~~g~~e~Ar~ife~al~~~Pk~---------~d---lw~~ya~~e~ 1874 (1935)
--...|+..|..+...+.-.+| .+++.++|..+++.+-..++.++-+++.+. .. ++..-++|+.
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT 202 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYT 202 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhh
Confidence 7777788777766443333455 468889999999999999998888776432 22 3444457788
Q ss_pred HcCCHHHHHHHHHHHHhcC
Q 000173 1875 RLGDVDLIRGLFERAISLS 1893 (1935)
Q Consensus 1875 k~g~~e~ar~lferal~~~ 1893 (1935)
.+.+-.....+|+++++.+
T Consensus 203 ~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 203 EQKNNKKLKALYEQALHIK 221 (440)
T ss_pred hhcccHHHHHHHHHHHHhh
Confidence 8888888999999999743
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.7 Score=51.16 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=115.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHH-HHHHH-HHHcCCCCH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV-AYFNL-ENEYGNPPE 1743 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~-ayl~l-e~~~g~~~~ 1743 (1935)
+.-+++....+++|...|.+...|..--..+.-+|+.+.-+..+++.+-.-+ ++.- ...++ .+..| ....|- .
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp-~~sYv~GmyaFgL~E~g~--y 191 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLP-CYSYVHGMYAFGLEECGI--Y 191 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCc-HHHHHHHHHHhhHHHhcc--c
Confidence 4588999999999999999999998888888889999999988888774322 2221 22222 22233 355673 4
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHc-CHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVVQ 1817 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~----~~vw~~~~~~l~~~-~~e~A~~ll~ 1817 (1935)
+.|++..+|||+.|+.. =...+.+.+++..+++.++.+...+.-....++ ..-|-..+.|+++. .++.|.++|.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 89999999999999876 556678889999999999999888765544322 33466778888888 9999999997
Q ss_pred HH-HHhCCC
Q 000173 1818 RA-LLSLPR 1825 (1935)
Q Consensus 1818 ra-lk~~p~ 1825 (1935)
+- ++.+..
T Consensus 272 ~ei~k~l~k 280 (491)
T KOG2610|consen 272 REIWKRLEK 280 (491)
T ss_pred HHHHHHhhc
Confidence 64 444433
|
|
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.059 Score=41.13 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1844 VADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1844 ~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
.+++||.+||+.+...|. ...|..||.||.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 579999999999999977 689999999974
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.082 Score=41.62 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=24.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000173 1852 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1883 (1935)
Q Consensus 1852 fe~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar 1883 (1935)
|+++|+.+|++.+.|+.|+.++...|+.++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67777777777777777777777777777765
|
|
| >COG0557 VacB Exoribonuclease R [Transcription] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.16 Score=69.06 Aligned_cols=75 Identities=28% Similarity=0.346 Sum_probs=63.2
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCC-cEEEEECccCCCcc-cCCc----------cccCCCCcEEEEEEEEEeCCCC
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGY-VESP----------EKEFPIGKLVAGRVLSVEPLSK 1441 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~-v~g~V~~s~lsd~~-~~~~----------~~~f~~G~~V~~kVl~vd~~~~ 1441 (1935)
-.-.+|+...|+|.+|+.+|+||.|... ++|+||++.|.+.| .-++ ...|+.|+.|+++|++++...+
T Consensus 618 m~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~~ 697 (706)
T COG0557 618 MKKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDER 697 (706)
T ss_pred HHHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEccccc
Confidence 3456899999999999999999999765 99999999999643 3232 2368999999999999999899
Q ss_pred EEEEEEe
Q 000173 1442 RVEVTLK 1448 (1935)
Q Consensus 1442 ri~lSlk 1448 (1935)
++.+++-
T Consensus 698 ~i~~~~v 704 (706)
T COG0557 698 KIDFELV 704 (706)
T ss_pred ceEEEec
Confidence 9988764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.54 E-value=2.5 Score=54.84 Aligned_cols=162 Identities=16% Similarity=0.106 Sum_probs=94.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcC-CCHH-----H-HHHHHHHHH-H---c-CHHHHHHHHHHHHHhCCCCChHHHHHH
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFK-HSCK-----V-WLRRVQRLL-K---Q-QQEGVQAVVQRALLSLPRHKHIKFISQ 1834 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~-~~~~-----v-w~~~~~~l~-~---~-~~e~A~~ll~ralk~~p~~~~~~~~~~ 1834 (1935)
+++.--.|+-+.+.+++.++.+... ..+- + |+.....+. . . ..+.|.++++.+.+.+|+. .-....
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s--~lfl~~ 272 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS--ALFLFF 272 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc--HHHHHH
Confidence 3344456777788888877765221 1111 1 111111111 1 2 6677888888888888877 244455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1835 TAILEFKNGVADRGRSMFEGILSEY---PKRTD-LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1835 ~a~le~~~g~~e~Ar~ife~al~~~---Pk~~d-lw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
-|+++...|++++|...|++++... |.-.+ .+..++..++-+.++++|...|.+.+. ...+.++ .+........
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~-~s~WSka-~Y~Y~~a~c~ 350 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK-ESKWSKA-FYAYLAAACL 350 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh-ccccHHH-HHHHHHHHHH
Confidence 5667778888888888888877422 22222 245555566677888888888888887 3333444 1211112234
Q ss_pred HHcCCH-------HHHHHHHHHHHHHHHh
Q 000173 1911 KSVGEE-------ERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1911 ~~~G~~-------e~a~~v~~rAle~v~~ 1932 (1935)
...|+. ++|..+|.++-.+..+
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 446666 6666666666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.52 E-value=4.1 Score=51.11 Aligned_cols=181 Identities=12% Similarity=0.037 Sum_probs=103.5
Q ss_pred HcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChH
Q 000173 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1777 (1935)
Q Consensus 1698 ~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~ 1777 (1935)
+..+..+-.+.+.+||+..|. . =-+|+-|...... +..+++++|++|++..... .+..+..
T Consensus 180 RERnp~aRIkaA~eALei~pd-----C---AdAYILLAEEeA~-Ti~Eae~l~rqAvkAgE~~----------lg~s~~~ 240 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPD-----C---ADAYILLAEEEAS-TIVEAEELLRQAVKAGEAS----------LGKSQFL 240 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhh-----h---hHHHhhccccccc-CHHHHHHHHHHHHHHHHHh----------hchhhhh
Confidence 345666667788888864431 1 1244444332222 5688999999998765321 0000000
Q ss_pred HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1778 LADELLYKMIKKFKHS--CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEG 1854 (1935)
Q Consensus 1778 ~A~el~~~~~k~~~~~--~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~ 1854 (1935)
....-+......-... .-+-.+++.++.+. +.++|.+.|..+++-+|...+..+...+...++..+.+.+++.++.+
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0000010111110111 22223566666666 88888888888888888766678888888888888888888888888
Q ss_pred HHHh-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhcCCCchhH
Q 000173 1855 ILSE-YPKRTDLWSIYLDQEIR-LGD---------------VDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1855 al~~-~Pk~~dlw~~ya~~e~k-~g~---------------~e~ar~lferal~~~~~pk~~ 1899 (1935)
.=.. .|+...+.+.-+-+..+ -+| ...|...+.||++ .+|.-.
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp 380 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVP 380 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCc
Confidence 6322 35655544433443332 122 1236678899998 555554
|
The molecular function of this protein is uncertain. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.47 E-value=4 Score=51.23 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
-+-..+|....+.|+.++|.++|..+++.+|. ...+...++..+...+.+..+..++.+-=. ..-|+.+-.-|.+.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD-i~lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD-ISLPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc-ccCCchHHHHHHHHH
Confidence 34456777788999999999999999999886 344788888888999999999999998543 223455534466655
Q ss_pred HHHHHcCC---------------HHHHHHHHHHHHHH
Q 000173 1908 EYEKSVGE---------------EERIEYVKQKAMEY 1929 (1935)
Q Consensus 1908 ~~E~~~G~---------------~e~a~~v~~rAle~ 1929 (1935)
---+.-|| ...|.+...||.++
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 33233333 22345667777665
|
The molecular function of this protein is uncertain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=93.40 E-value=2.1 Score=54.52 Aligned_cols=146 Identities=13% Similarity=0.071 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|-..++-|...++|+.|.++|.++- .+...+.+|-+. +.+.|.++-+.+ ......+.+|+.-|+-+
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDL 834 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhH
Confidence 334455666777788888888886653 112222333344 566665554443 33333356677667766
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1919 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a 1919 (1935)
-++|.+.+|.++|-.+ -.|. ..++|+-+.|..+....+.++ ..+..+..-.+.+..-.+..|+.+.|
T Consensus 835 dehgkf~eaeqlyiti--~~p~------~aiqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITI--GEPD------KAIQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred HhhcchhhhhheeEEc--cCch------HHHHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHHHHHHhccChhHH
Confidence 6778777777766432 1222 224566666766666666655 44455545556666555556777777
Q ss_pred HHHHHHHHHHH
Q 000173 1920 EYVKQKAMEYV 1930 (1935)
Q Consensus 1920 ~~v~~rAle~v 1930 (1935)
+.-|-+|-+|-
T Consensus 902 e~~flea~d~k 912 (1636)
T KOG3616|consen 902 EEHFLEAGDFK 912 (1636)
T ss_pred HHHHHhhhhHH
Confidence 77776666553
|
|
| >PRK12329 nusA transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.19 Score=62.15 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=59.1
Q ss_pred CCcEEEEEEEeeecceEEEEe----cCCcceecccCCCCCCCCCCcCCCCcEEEEEEEEEcCC---CcEEEEccCccccc
Q 000173 232 EGMVLTAYVKSIEDHGYILHF----GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT---RKVVYLSSDPDTVS 304 (1935)
Q Consensus 232 ~g~~l~~~V~svedhG~ild~----Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~v~~~~~~---~~~v~ls~~~~~~~ 304 (1935)
.|.+++|.|..++.++++||+ |-.++.|+||+++.-+.. .|++|+.+.|.|..|... |-.+.||.....+-
T Consensus 152 ~GeIV~G~V~r~e~~~viv~l~~~~g~~~~EaiLP~~Eqip~E--~y~~Gdrika~i~~V~~~~~kGpqIilSRt~p~lv 229 (449)
T PRK12329 152 EDTVLTARVLRFERQSVIMAVSSGFGQPEVEAELPKREQLPND--NYRANATFKVFLKEVSEGPRRGPQLFVSRANAGLV 229 (449)
T ss_pred cCcEEEEEEEEEcCCCEEEEecccCCCcceEEEecHHHcCCCC--cCCCCCEEEEEEEEeecCCCCCCEEEEEcCCHHHH
Confidence 699999999999999999998 533589999999966566 999999999999999553 56788887555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.2 Score=39.00 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
.+|..+|.+++..|++++|+..|+++++.+|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567788888888888888888888888888764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=3 Score=47.87 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC----CC---HHH
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC----DP---KKV 1762 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~----~~---~~v 1762 (1935)
..|+.+++-.+++.-....+...++..|.. +-.+-.+++.+..++| +++.|...|++.-+.+ .- ..+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~----~p~L~s~Lgr~~MQ~G--D~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQ----EPQLLSGLGRISMQIG--DIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcc----cHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 456677778888888888888888754421 2356778888889999 6788888888554332 21 267
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
+.+.+.+|.-++++..|...|.+++...+.++..-.+-|.+++.. +..+|.+.++.++...|..
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 777788888888888888888888887777777777777777777 8888888888888888875
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.24 E-value=10 Score=55.74 Aligned_cols=232 Identities=16% Similarity=0.149 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHH
Q 000173 1684 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1761 (1935)
Q Consensus 1684 ~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e--e~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~ 1761 (1935)
++++.|.+-+..--...++.+-.-.++|++-....+. ...-.+.|+.++.+....| ..+.|....-.|.+.. ..+
T Consensus 1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG--~~q~A~nall~A~e~r-~~~ 1703 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG--HLQRAQNALLNAKESR-LPE 1703 (2382)
T ss_pred ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc--cHHHHHHHHHhhhhcc-cch
Confidence 4668898877664444445555556667665553321 1122379999999999999 5588887777776665 559
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhc-CC----------------CHHHHHHHHHHHHHc---CHHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKF-KH----------------SCKVWLRRVQRLLKQ---QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~-~~----------------~~~vw~~~~~~l~~~---~~e~A~~ll~ralk 1821 (1935)
++...|..+++.|+...|...++..+.++ ++ ..++.+.++.|.... ..++...+|+.+..
T Consensus 1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~a 1783 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKA 1783 (2382)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999998654 43 133456666766666 66778899999999
Q ss_pred hCCCCC--hHHHHHHHHHHHH--------HcCCHHH---HHHHHHHHHHh--------CCCCHHHHHHHHHHHH------
Q 000173 1822 SLPRHK--HIKFISQTAILEF--------KNGVADR---GRSMFEGILSE--------YPKRTDLWSIYLDQEI------ 1874 (1935)
Q Consensus 1822 ~~p~~~--~~~~~~~~a~le~--------~~g~~e~---Ar~ife~al~~--------~Pk~~dlw~~ya~~e~------ 1874 (1935)
.+|... |..+-..|..++. ++|++.. |..-|.+++.. .|+=..+|..|+.-..
T Consensus 1784 il~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~ 1863 (2382)
T KOG0890|consen 1784 ILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAP 1863 (2382)
T ss_pred HcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCC
Confidence 999543 2222222444443 3456666 44444566543 4555678988644332
Q ss_pred ----HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH--cCCHHHHHHH
Q 000173 1875 ----RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS--VGEEERIEYV 1922 (1935)
Q Consensus 1875 ----k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~--~G~~e~a~~v 1922 (1935)
..++.+..-.+.++++. .+||- .|+..|-++-.+ |-+.+-+.-+
T Consensus 1864 r~ei~s~~~~~in~~i~~~~~-~lp~Y---~f~ta~sQLlSRicH~~~dV~~vl 1913 (2382)
T KOG0890|consen 1864 RGEIVSKNLKLINSLIEEALE-HLPTY---QFYTAYSQLLSRICHPNQDVARVL 1913 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHHH-hCcch---HHHHHHHHHHHHHcCCchHHHHHH
Confidence 22334445556666666 45542 355666666544 4444443333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.20 E-value=3.8 Score=46.74 Aligned_cols=127 Identities=12% Similarity=0.102 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH------HHHHHHHc-CHHHHHHHHHHHHHhCCCCCh---H-
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR------RVQRLLKQ-QQEGVQAVVQRALLSLPRHKH---I- 1829 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~------~~~~l~~~-~~e~A~~ll~ralk~~p~~~~---~- 1829 (1935)
.+|.+.+..|..+.++++|...+.++.+-+.++...|.. .+-.+.+. .+.++..+|++|....-.+-. .
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 666677788888999999999999998887766655532 22222233 778888888888765432211 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPK--R----TDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~----~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
.+.-+.|. ..++-+|+.|.++|++++..... | .+++......+.+...+++|-..|.+
T Consensus 112 maleKAak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 112 MALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 22223332 34567899999999999877533 2 23566667777777777776655554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.31 Score=57.01 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=89.2
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
..+.-|+++ ++++|...|.+++...|.+. -++.+.|..|++...+..|..-.+.++..+-.....|..-+..-..+|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~Np--V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNP--VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCc--cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 456678888 99999999999999998763 788899999999999999999999999887666667888788888899
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000173 1878 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1878 ~~e~ar~lferal~~~~~pk~~k~l~~~yl~~ 1909 (1935)
...+|..-+|++|. +-|+.. .+-+.|.++
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~~-ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKNI-ELKKSLARI 208 (536)
T ss_pred hHHHHHHhHHHHHh--hCcccH-HHHHHHHHh
Confidence 99999999999999 777765 466666553
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.16 Score=38.89 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000173 1775 QNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1805 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~ 1805 (1935)
+.+.|+.+|+++++.++.+..+|..|+.++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 4566677777777777777777777776553
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.98 E-value=10 Score=43.73 Aligned_cols=130 Identities=12% Similarity=0.062 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC----CCChHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP----RHKHIKFISQT 1835 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~-~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p----~~~~~~~~~~~ 1835 (1935)
+.+.|++++.-.+.|.-...+|++.++++ +..+.+-..++..-++- +.+.|..+|++.-+... ......+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33445566667788888999999999988 56677777888888887 99999988886544321 12224677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1836 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
|.++.-.+++..|...|.+++..+|.+.-..+.-|-..+-.|+...|....+.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888888999999999999999999888777777777778888899999999887
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.86 E-value=7.2 Score=48.49 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh-CCCC--------
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFK----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS-LPRH-------- 1826 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~----~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~-~p~~-------- 1826 (1935)
..|+.++.+..+.|.++.|...+.++....+ ..+.+.+.++.++... +..+|...++..+.. +...
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 8899999999999999999999999887541 2578888899999888 888898888887771 1111
Q ss_pred -----------------------ChHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000173 1827 -----------------------KHIKFISQTAILEFKN------GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1876 (1935)
Q Consensus 1827 -----------------------~~~~~~~~~a~le~~~------g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~ 1876 (1935)
...+++..+|.+.... +..+.+...|..+++.+|.....|..++.++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 1136788888888877 8899999999999999999999999999988754
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.75 E-value=3.3 Score=53.79 Aligned_cols=149 Identities=17% Similarity=0.112 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHhcCCCH--------HHHHHHHH-HHH---HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C
Q 000173 1742 PEEAVVKVFQRALQYCDPK--------KVHLALLG-LYE---RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1808 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~~--------~v~~~l~~-i~~---~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~ 1808 (1935)
+.+...+.+.++.+...-. -.|+..+. ++- .....+.|.+++..+.++||++.-..+..++++... +
T Consensus 203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~ 282 (468)
T PF10300_consen 203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGN 282 (468)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 5678888888888755432 11222221 111 345678999999999999997665555666666666 9
Q ss_pred HHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcCCH-----
Q 000173 1809 QEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD--QEIRLGDV----- 1879 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~--~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~--~e~k~g~~----- 1879 (1935)
+++|.+.|++|+..-..-+ +.-.+..+|..+.-+.++++|...|.++++...-. ..++.|+. .+...++.
T Consensus 283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-ka~Y~Y~~a~c~~~l~~~~~~~~ 361 (468)
T PF10300_consen 283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-KAFYAYLAAACLLMLGREEEAKE 361 (468)
T ss_pred HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHhhccchhhhh
Confidence 9999999999985322211 12456667777788999999999999999876553 55555555 44456777
Q ss_pred --HHHHHHHHHHHh
Q 000173 1880 --DLIRGLFERAIS 1891 (1935)
Q Consensus 1880 --e~ar~lferal~ 1891 (1935)
++|..+|.++-.
T Consensus 362 ~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 362 HKKEAEELFRKVPK 375 (468)
T ss_pred hHHHHHHHHHHHHH
Confidence 888889988765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=92.31 E-value=9.1 Score=47.50 Aligned_cols=174 Identities=14% Similarity=0.064 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhcCCC--
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE---YGNPPEEAVVKVFQRALQYCDP-- 1759 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~---~g~~~~e~a~~vferAl~~~~~-- 1759 (1935)
+++.-++++-.|-...+++.-.++.+..- .+|.-.-.+..++-..|+-..++ -| +.+.|.+++..++.....
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~-~~p~~~~~~~~~i~~~yafALnRrn~~g--dre~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLE-ALPTCDVANQHNIKFQYAFALNRRNKPG--DREKALQILLPVLESDENPD 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhh-ccCccchhcchHHHHHHHHHHhhcccCC--CHHHHHHHHHHHHhccCCCC
Confidence 56667778878888889999999887655 45433333345677778777777 77 559999999997766543
Q ss_pred HHHHHHHHHHHHH---------cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CHH---HHHHHH---HHHH-H
Q 000173 1760 KKVHLALLGLYER---------TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQE---GVQAVV---QRAL-L 1821 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~---------~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~--~~e---~A~~ll---~ral-k 1821 (1935)
.++|--++.+|.+ ....++|.+.|.++....+ +.-.=++++..+.-. +++ +.+++- ...+ +
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 3667777766642 1236777777777776542 111113555544443 222 222222 1111 1
Q ss_pred --hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1822 --SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1822 --~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
........-.+..++.+..-.|+++.|.+.++++++..|..
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 11112212233444555556778888888888887776554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.17 E-value=1.1 Score=51.72 Aligned_cols=168 Identities=16% Similarity=0.099 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
+.|.++...-.+.+|. .--...++-+|....++..|-+.|++++..+|....--+-+++.+.+. .+..|..+...+..
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 5566666666666673 466667778999999999999999999999998888888889988888 88888887766542
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP--KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~P--k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
. | .-+-.....-+...+..+|..-+|.+.++. | ...+..+..+-+.++.|+++.|..-|..|+. ..-=+.
T Consensus 107 ~-~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~Ad~~in~gCllykegqyEaAvqkFqaAlq--vsGyqp 178 (459)
T KOG4340|consen 107 N-P-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ--VSGYQP 178 (459)
T ss_pred C-H-HHHHHHHHHHHHHhcccccCcchHHHHHhc----cCCCccchhccchheeeccccHHHHHHHHHHHHh--hcCCCc
Confidence 2 1 112244555555667889999999998874 5 4677888889999999999999999999998 332222
Q ss_pred HHHHHHHHHHHHHcCCHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIE 1920 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~ 1920 (1935)
-..|+..+.-. +.|++..|.
T Consensus 179 llAYniALaHy-~~~qyasAL 198 (459)
T KOG4340|consen 179 LLAYNLALAHY-SSRQYASAL 198 (459)
T ss_pred hhHHHHHHHHH-hhhhHHHHH
Confidence 23455555433 234444433
|
|
| >PRK10811 rne ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.45 Score=63.53 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=51.8
Q ss_pred CCCCEEEEEEEEEee--ceEEEEeCCCcEEEEECccCCCcccCC---------ccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000173 1377 SPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDGYVES---------PEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~--~G~fV~l~~~v~g~V~~s~lsd~~~~~---------~~~~f~~G~~V~~kVl~vd~~~~ri~l 1445 (1935)
.+|.++.|+|.+|.+ .++||+||.+..||++++|....+..+ ....+++||.|-+-|..-...++-..|
T Consensus 37 ~vGnIYkGkVenIvPGInAAFVDIG~gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~KEa~gtKGp~L 116 (1068)
T PRK10811 37 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 (1068)
T ss_pred CccceEEEEEecccCCcceeEEEecCCcceEEEhhhccccccccccccccccccccccCCCCEEEEEEeecccCCCCCce
Confidence 479999999999966 599999999999999999996543222 134588999999988764433333333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.47 Score=36.97 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
.+|...|..++..|++++|...|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46677777777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=90.81 E-value=4.6 Score=43.40 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhC
Q 000173 1863 TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1935 (1935)
Q Consensus 1863 ~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~~ 1935 (1935)
.+++..++..+...|+++.|..+.++++. ..|-+- .+|...+......|+...|..+|+++...+..-+|
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E-~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALA--LDPYDE-EAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-H-HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 35677777888889999999999999999 666554 68999999999999999999999999988876543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.53 E-value=2.3 Score=48.35 Aligned_cols=99 Identities=16% Similarity=0.021 Sum_probs=74.7
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1772 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRS 1850 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ 1850 (1935)
...+|..|...|.+++.+.|..+.-|.+.+.++++. +++.+..--.||++..|+. ++..+..+++.+....++.|..
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccccHHHH
Confidence 345677788888888888888888888888888888 8888888888888887766 5777777888888888888888
Q ss_pred HHHHHHHhC-----CCCHHHHHHHHHH
Q 000173 1851 MFEGILSEY-----PKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1851 ife~al~~~-----Pk~~dlw~~ya~~ 1872 (1935)
.+.++.... |--.++|..+.+.
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 888885432 2234577766554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.41 E-value=26 Score=42.79 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=109.7
Q ss_pred HHcCCHHHHHHHHHHHHHhccccchhhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--------------H
Q 000173 1697 LSMADVEKARSIAERALQTINIREENEKL-NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--------------K 1761 (1935)
Q Consensus 1697 l~~~e~dkAr~v~erAl~~i~~~ee~Ekl-~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~--------------~ 1761 (1935)
.+.|+..+....|+.|++. .. ++..-+ .||.++.|.+. ...-|++|+++.... +
T Consensus 28 ck~gdcraGv~ff~aA~qv-GT-eDl~tLSAIYsQLGNAyf---------yL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 28 CKMGDCRAGVDFFKAALQV-GT-EDLSTLSAIYSQLGNAYF---------YLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HhccchhhhHHHHHHHHHh-cc-hHHHHHHHHHHHhcchhh---------hHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 4667888888889888853 22 221111 23333333333 344456666665332 2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHc--------------CHHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ--------------QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------~~~~vw~~~~~~l~~~--------------~~e~A~~ll~ralk 1821 (1935)
.--.+++++.-.|.|++|.-...+-+..-. .....+++++..|... ..+++++.|++|.+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 233455677888888888877766553321 2355677888877643 35778888999887
Q ss_pred hCCCCChHHHHHHHHH-------------HHHHcCCHHHHHHHHHHHHH---hCCCCHH---HHHHHHHHHHHcCCHHHH
Q 000173 1822 SLPRHKHIKFISQTAI-------------LEFKNGVADRGRSMFEGILS---EYPKRTD---LWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~-------------le~~~g~~e~Ar~ife~al~---~~Pk~~d---lw~~ya~~e~k~g~~e~a 1882 (1935)
.+-.+ .++....+. .||-.|+++.|....+.-|. .+.++.. ....++..++-.|+++-|
T Consensus 177 fy~eN--L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 177 FYMEN--LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred HHHHH--HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence 66333 344444433 12335677777766655443 3455443 455566667778889988
Q ss_pred HHHHHHHHh
Q 000173 1883 RGLFERAIS 1891 (1935)
Q Consensus 1883 r~lferal~ 1891 (1935)
...|.+++.
T Consensus 255 ~ehYK~tl~ 263 (639)
T KOG1130|consen 255 IEHYKLTLN 263 (639)
T ss_pred HHHHHHHHH
Confidence 888888775
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.24 E-value=6 Score=45.06 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
.++..|++++...++|-++.+.....++.++.+.++++..|...... +.++|+.-|+.+|...|.-.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 56778888888888888888888889999999999999888888888 88899988888888877653
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.90 E-value=7.8 Score=44.77 Aligned_cols=191 Identities=12% Similarity=0.043 Sum_probs=120.2
Q ss_pred hccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc-CChHHHHHHHHHHHHhcCC
Q 000173 1715 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERT-EQNKLADELLYKMIKKFKH 1792 (1935)
Q Consensus 1715 ~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~-~~~~~A~el~~~~~k~~~~ 1792 (1935)
.|.+++++.. -++|+..-...++ ...+|.++-+.++..+|.+ ++|.-.-.++... .+..+-.+.+.+.+..+|.
T Consensus 35 ~I~Yte~fr~---~m~YfRAI~~~~E-~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK 110 (318)
T KOG0530|consen 35 KIAYTEDFRD---VMDYFRAIIAKNE-KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK 110 (318)
T ss_pred EeeechhHHH---HHHHHHHHHhccc-cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc
Confidence 4556565544 4555554444443 2478888888888888876 8887777666543 3455667777777778888
Q ss_pred CHHHHHHHHHHHHHc-CHH-HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQE-GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1870 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e-~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya 1870 (1935)
+..+|...-...... ++. +-.++.++++....++ ..+|...-......++++.-.+.-..+|..+--+-.+|+.-.
T Consensus 111 NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN--YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ry 188 (318)
T KOG0530|consen 111 NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN--YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRY 188 (318)
T ss_pred chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc--hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheee
Confidence 888888766555544 554 5566777787765444 456665555555566688888887888877766667787632
Q ss_pred HHHHH-cCCHH-----HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-cC
Q 000173 1871 DQEIR-LGDVD-----LIRGLFERAISLSLPPKKMKFLFKKYLEYEKS-VG 1914 (1935)
Q Consensus 1871 ~~e~k-~g~~e-----~ar~lferal~~~~~pk~~k~l~~~yl~~E~~-~G 1914 (1935)
-.... .|-.+ +-.++....|. +-|.+. ..|+-...+... .|
T Consensus 189 fvi~~~~~~~~~~~le~El~yt~~~I~--~vP~Ne-SaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 189 FVITNTKGVISKAELERELNYTKDKIL--LVPNNE-SAWNYLKGLLELDSG 236 (318)
T ss_pred EEEEeccCCccHHHHHHHHHHHHHHHH--hCCCCc-cHHHHHHHHHHhccC
Confidence 22222 23222 23344455555 666665 678887777665 44
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=89.66 E-value=12 Score=46.95 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=101.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH---HHHcCCCCHHHHHH
Q 000173 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL---ENEYGNPPEEAVVK 1748 (1935)
Q Consensus 1672 ~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~l---e~~~g~~~~e~a~~ 1748 (1935)
....-.+|..+|...+..++.+..+.++|+.+.|.++.+|||-... ..|...... ....|. ++=
T Consensus 26 p~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e--------~~~~~~F~~~~~~~~~g~-----~rL 92 (360)
T PF04910_consen 26 PNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE--------RAFHPSFSPFRSNLTSGN-----CRL 92 (360)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHHHhhhhhcccccCc-----ccc
Confidence 3444566789999999999999999999999999999999995322 122222211 011111 010
Q ss_pred HHHHHHhcCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc--CHHHHHHHHHHHHHh
Q 000173 1749 VFQRALQYCDPKKV---HLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRRVQRLLKQ--QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1749 vferAl~~~~~~~v---~~~l~~i~~~~~~~~~A~el~~~~~k~~~~-~~~vw~~~~~~l~~~--~~e~A~~ll~ralk~ 1822 (1935)
-|++. .+... -+.++....+.|-+..|.+..+-++...|. .+---+.+++++.-. +++--.++++.....
T Consensus 93 ~~~~~----eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 93 DYRRP----ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred CCccc----cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Confidence 00000 11122 234455666777777777777777777665 444444444444433 555555555544332
Q ss_pred CCCC---ChHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCCH
Q 000173 1823 LPRH---KHIKFISQTAILEFKNGVA---------------DRGRSMFEGILSEYPKRT 1863 (1935)
Q Consensus 1823 ~p~~---~~~~~~~~~a~le~~~g~~---------------e~Ar~ife~al~~~Pk~~ 1863 (1935)
.... ..+.+-+..|-.++..++. +.|+..+.+|+..+|.-.
T Consensus 169 ~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 169 CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 1111 0113344444555555555 899999999998888643
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.57 E-value=33 Score=46.37 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc
Q 000173 1866 WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV 1913 (1935)
Q Consensus 1866 w~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~ 1913 (1935)
.-.++.++...|-+++...++|.++. +-...| -+|....-++.++
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~LG--LERAHM-gmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGLG--LERAHM-GMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHH-HHHHHHHHHHHhc
Confidence 44455556667888888888888776 555555 3555444444333
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.56 Score=36.04 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
++...|.++++.|++++|+..|++++..+|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56778888888899999999999999999874
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.21 E-value=26 Score=47.28 Aligned_cols=181 Identities=14% Similarity=0.201 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCC
Q 000173 1703 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQ 1775 (1935)
Q Consensus 1703 dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~ 1775 (1935)
..|...++-+++..+...+.| ..+.+.|+.+.....+ ..+.|+..++||+..+... ....-++.+|.+.+.
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~e-a~~~l~la~iL~~eT~-n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQE-ARVRLRLASILLEETE-NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHH-HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 346666666665444333333 5678888888776665 4799999999998777431 555566788888888
Q ss_pred hHHHHHHHHHHHHhcCC-CHHHHHHHHHHH-----HHc-CHHHHHHHHHHHHHhCC--CCChHHHHHHHH--HHHHHcCC
Q 000173 1776 NKLADELLYKMIKKFKH-SCKVWLRRVQRL-----LKQ-QQEGVQAVVQRALLSLP--RHKHIKFISQTA--ILEFKNGV 1844 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~-~~~vw~~~~~~l-----~~~-~~e~A~~ll~ralk~~p--~~~~~~~~~~~a--~le~~~g~ 1844 (1935)
.. |.....+++..+.. ....|....+++ +.. ++..|.+.++....... .+..+.+...+. .++...+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 87 99999999987754 334455444443 223 78889999998887653 333233333332 34446777
Q ss_pred HHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHH--HcCCHHHHHHHH
Q 000173 1845 ADRGRSMFEGILSEY----------PKRTDLWSIYLDQEI--RLGDVDLIRGLF 1886 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~----------Pk~~dlw~~ya~~e~--k~g~~e~ar~lf 1886 (1935)
++.+.+.+.++.... +...++|....++.. ..|+++.++..+
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L 248 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKL 248 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888774322 223567888888765 567766655443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.86 Score=35.29 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
.+|+.++..++.. ++++|++.|+++++..|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3455555555555 555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=89.03 E-value=26 Score=43.67 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHH---cCChHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHhCCCC
Q 000173 1761 KVHLALLGLYER---TEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ----------QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1761 ~v~~~l~~i~~~---~~~~~~A~el~~~~~-k~~~~~~~vw~~~~~~l~~~----------~~e~A~~ll~ralk~~p~~ 1826 (1935)
.+-+.|+-.+-+ .|+.++|.+++..++ +..+..+++|-.++..|... ..++|...|.++....|..
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 666667766766 788888888887744 34467778888777766643 3567777888887776443
Q ss_pred ChHHHHHHHHHHHHHcCCHH----HHHHHHHHH---H-H--hCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1827 KHIKFISQTAILEFKNGVAD----RGRSMFEGI---L-S--EYPKRTDLWSI--YLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1827 ~~~~~~~~~a~le~~~g~~e----~Ar~ife~a---l-~--~~Pk~~dlw~~--ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
-.=+++|.++.-.|... +.+.+--++ + + ...+..+-|.. |+...+-.|+.++|...+++++.
T Consensus 260 ---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 260 ---YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 34456666666666422 223322111 1 1 12233456654 44455567888888888888887
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.27 E-value=19 Score=42.90 Aligned_cols=142 Identities=11% Similarity=0.016 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCC-HHHH--HHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF-KHS-CKVW--LRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~-~~~-~~vw--~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
-...++.|+-.|.. -.|..--..+..+|+.+.-...+++.+-+. ++. ...| =.|+-.+++. -+++|.+.-.||+
T Consensus 123 ~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ral 202 (491)
T KOG2610|consen 123 AIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRAL 202 (491)
T ss_pred HHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhc
Confidence 33444444444443 222222223334455555555555544432 111 1111 1344444444 5555555555555
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~----~dlw~~ya~~e~k~g~~e~ar~lferal 1890 (1935)
+.++.+ .-.-...|-.+.-+|+..+|.+.++.--...... .+-|-.-+-+++..++++.|..+|+|-+
T Consensus 203 qiN~~D--~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 203 QINRFD--CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred cCCCcc--hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 555433 1122222333334455555555444432221111 1112223444444455555555555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.89 E-value=7.4 Score=43.51 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH----HHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI----KFI 1832 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~---~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~----~~~ 1832 (1935)
..|..+++.|.+.|++++|.+.|.++..... ...++|+..++..+.. ++..+...+.+|-......... .+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 6677888888888888888888888776552 3466777777777777 7877777777776554332111 222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSEYP 1860 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~~P 1860 (1935)
..-|-.++..+++..|-.+|-.++..+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 2333344567788888888877766554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.58 E-value=56 Score=44.30 Aligned_cols=236 Identities=15% Similarity=0.025 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHhcCCCH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE---ENEKLNIWVAYFNLEN-EYGNPPEEAVVKVFQRALQYCDPK 1760 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e---e~Ekl~lW~ayl~le~-~~g~~~~e~a~~vferAl~~~~~~ 1760 (1935)
++.+=+-|+=....+.++++|-.+..++....+... ...-+--|.++-+.-. ..+ +.+.|.++.++|+..-|..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~--~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG--DPEEAEDLARLALVQLPEA 491 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhcccc
Confidence 344444454445567788888888877776555421 1112345777666543 345 5699999999999988764
Q ss_pred ------HHHHHHHHHHHHcCChHHHHHHHHHHHHh---c-CCCHHHHHHHHH--HHHHc-C--HHHHHHHH----HHHHH
Q 000173 1761 ------KVHLALLGLYERTEQNKLADELLYKMIKK---F-KHSCKVWLRRVQ--RLLKQ-Q--QEGVQAVV----QRALL 1821 (1935)
Q Consensus 1761 ------~v~~~l~~i~~~~~~~~~A~el~~~~~k~---~-~~~~~vw~~~~~--~l~~~-~--~e~A~~ll----~ralk 1821 (1935)
..+...+....-.|++++|+.+...+.+. + .....+|..+.. ++..+ + +......| .+-+.
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 55666677778889999999998877654 2 344666766633 33333 1 22222222 22233
Q ss_pred hCCCCChHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000173 1822 SLPRHKHIKFISQTAILEF----KNGVADRGRSMFEGILSEYPKRTDLWSI---YLDQEIRLGDVDLIRGLFERAISLSL 1894 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~----~~g~~e~Ar~ife~al~~~Pk~~dlw~~---ya~~e~k~g~~e~ar~lferal~~~~ 1894 (1935)
..|.+. -....+++++. -.+...+++.-++-....-|...+.|.. ++.+++..|+.+.|.....+....-.
T Consensus 572 q~~~~~--f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 572 QKPRHE--FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hcccch--hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 333322 22233333332 2345566777777666667777666654 57778889999999998888776322
Q ss_pred CchhHHHHHHHHHH-----HHHHcCCHHHHHHHHHH
Q 000173 1895 PPKKMKFLFKKYLE-----YEKSVGEEERIEYVKQK 1925 (1935)
Q Consensus 1895 ~pk~~k~l~~~yl~-----~E~~~G~~e~a~~v~~r 1925 (1935)
.+. ...+|...+. +=..+||.+.+.....+
T Consensus 650 ~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 650 NGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 322 1234544442 22336777766554443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.57 E-value=1 Score=35.11 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
.+|+.+|..++.. ++++|...|++|++..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566666666666 666666666666666553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.43 E-value=2.9 Score=48.74 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
+.++|..+|+.|++..|.+ ++++..|++|...+++.-+|-.+|-+||...|.+..
T Consensus 131 k~ekA~~lfeHAlalaP~~--p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTN--PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred chHHHHHHHHHHHhcCCCC--HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 4555555555555554444 345555555544444555555555555555554443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.29 E-value=11 Score=47.95 Aligned_cols=208 Identities=14% Similarity=0.122 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHH-HHHH--cCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 000173 1688 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN-LENE--YGNPPEEAVVKVFQRALQYCDPKKVHL 1764 (1935)
Q Consensus 1688 lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~-le~~--~g~~~~e~a~~vferAl~~~~~~~v~~ 1764 (1935)
-|..++.-.+..-+++-||..|-|.-. . -|+.++. |+.+ .|+. .+...- -..+. ...-+.
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRd-l----------~~L~li~EL~~~k~rge~-P~~iLl--A~~~A---y~gKF~ 649 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRD-L----------RYLELISELEERKKRGET-PNDLLL--ADVFA---YQGKFH 649 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhc-c----------HHHHHHHHHHHHHhcCCC-chHHHH--HHHHH---hhhhHH
Confidence 477777777777888889988877652 2 2555443 2222 2321 111100 00000 112234
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH--Hh---c-----CC-CHHHHHHHHHHHHHc-CHHHHHHHHH------HHHHhCCCC
Q 000173 1765 ALLGLYERTEQNKLADELLYKMI--KK---F-----KH-SCKVWLRRVQRLLKQ-QQEGVQAVVQ------RALLSLPRH 1826 (1935)
Q Consensus 1765 ~l~~i~~~~~~~~~A~el~~~~~--k~---~-----~~-~~~vw~~~~~~l~~~-~~e~A~~ll~------ralk~~p~~ 1826 (1935)
..+.++.++|.-..|.++|..+. .. | +. ...+-...|.+.... ++..|.+++- +|+.....+
T Consensus 650 EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~ 729 (1081)
T KOG1538|consen 650 EAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDH 729 (1081)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcc
Confidence 45667777777777777776442 10 1 01 122223344444444 4444444332 222222111
Q ss_pred Ch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1827 KH---------------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1827 ~~---------------~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.- .+.+...|+.+.+...+.-|-++|.++= | --...+|+...++.++|-++-|+.-+
T Consensus 730 gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g-------D-~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 730 GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG-------D-LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc-------c-HHHHhhheeecccchHhHhhhhhCcc
Confidence 10 1223333333333334444444444330 0 11234555566777777766665222
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1892 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1892 ~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rA 1926 (1935)
+. ...+..|.+|..+...+++|.+.|.||
T Consensus 802 --~~----~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 802 --FK----DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred --cc----ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 22 256667777766666677777777665
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.18 E-value=4.6 Score=46.01 Aligned_cols=100 Identities=14% Similarity=0.032 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
.+..|...|.|||...|.. +..|.+-|..+++..+.+.+..--.++++..|+..-.-+-+.+.......++.|...+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~--~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTV--ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhchHHHHHHHHHhcCCCc--chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 6888999999999999988 58999999999999999999999999999999987777777787888888999999999
Q ss_pred HHHhc--CCCchhHHHHHHHHHHH
Q 000173 1888 RAISL--SLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1888 ral~~--~~~pk~~k~l~~~yl~~ 1909 (1935)
||.++ .-++.....||+....-
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHH
Confidence 99652 12222333677776654
|
|
| >KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription] | Back alignment and domain information |
|---|
Probab=87.11 E-value=3 Score=44.31 Aligned_cols=66 Identities=23% Similarity=0.394 Sum_probs=44.2
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecCceeEEe--e--ccccCcc-------cccCcccccCCCCEEEEEEEEEecCCCee
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLC--H--VSELSED-------HVDNIETIYRAGEKVKVKILKVDKEKRRI 1534 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~--h--~sels~~-------~~~~~~~~~~~Gd~V~~~Il~id~~~~ri 1534 (1935)
=.|+++.|.|+.|...|+|++++| ++-++ | ..++.-. +..+-.+....|.+|+.+|+....+...|
T Consensus 80 fKGEVvdgvV~~Vnk~G~F~~~GP--l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~~~~~i 156 (170)
T KOG3298|consen 80 FKGEVVDGVVTKVNKMGVFARSGP--LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRVDETEI 156 (170)
T ss_pred cCCcEEEEEEEEEeeeeEEEeccc--eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEEeeeeE
Confidence 469999999999999999999976 33322 1 1111111 11112236889999999999987555554
|
|
| >PRK11712 ribonuclease G; Provisional | Back alignment and domain information |
|---|
Probab=86.84 E-value=1.3 Score=56.80 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=45.7
Q ss_pred CCCCCEEEEEEEEEee--ceEEEEeCCCcEEEEECccCCCc--cc----------CCccccCCCCcEEEEEEEE
Q 000173 1376 LSPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDG--YV----------ESPEKEFPIGKLVAGRVLS 1435 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~--~G~fV~l~~~v~g~V~~s~lsd~--~~----------~~~~~~f~~G~~V~~kVl~ 1435 (1935)
..+|.++.|+|.+|.+ .++||++|.+..||+|++|+... +. ....+.+++||.|-+-|+.
T Consensus 36 ~~vGnIY~G~V~~v~pg~~AAFVdIG~~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~K 109 (489)
T PRK11712 36 GIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVK 109 (489)
T ss_pred cccccEEEEEEeecCCCCceeEEeeCCCccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEe
Confidence 3489999999999977 58999999999999999998421 10 0112347789988887754
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.79 E-value=3.2 Score=51.29 Aligned_cols=109 Identities=16% Similarity=0.102 Sum_probs=88.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHH-HhcCC--------CHHHHHHHHHHHHHc-CHHHHHHHHHHHHH-hC-----------
Q 000173 1766 LLGLYERTEQNKLADELLYKMI-KKFKH--------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALL-SL----------- 1823 (1935)
Q Consensus 1766 l~~i~~~~~~~~~A~el~~~~~-k~~~~--------~~~vw~~~~~~l~~~-~~e~A~~ll~ralk-~~----------- 1823 (1935)
-.++|...|++.+|..++...- .+.+. ..-.|.+++-..++. .++.+..+|.+||+ .+
T Consensus 246 Ksq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~ 325 (696)
T KOG2471|consen 246 KSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK 325 (696)
T ss_pred HHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 3567888899999988886542 22221 466789999988888 99999999999996 11
Q ss_pred ----CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1824 ----PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1824 ----p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
..++...+.++.+-+++..|+|-.|-+.|..+.+.+-.++.+|..++...+
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 224557899999999999999999999999999999999999999998766
|
|
| >PRK10811 rne ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Probab=86.27 E-value=1.4 Score=59.02 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=52.6
Q ss_pred CCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCC-CCCCCCCCCCEEEEEEEEEecC
Q 000173 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF-DPLSGYDEGQFVKCKVLEISRT 1333 (1935)
Q Consensus 1259 ~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~-~p~~~~~~G~~v~~~Vl~vd~~ 1333 (1935)
+|.|+.|+|.+|.++-+++||+||.+..|++|+.|+...+..++ |..... +....+++||.|-|.|..-...
T Consensus 38 vGnIYkGkVenIvPGInAAFVDIG~gknGFL~L~Di~~~~f~~~---~~~~~~~~i~~~Lk~GqeILVQV~KEa~g 110 (1068)
T PRK10811 38 KANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPAN---YSAHGRPNIKDVLREGQEVIVQIDKEERG 110 (1068)
T ss_pred ccceEEEEEecccCCcceeEEEecCCcceEEEhhhccccccccc---cccccccccccccCCCCEEEEEEeecccC
Confidence 89999999999999877999999999999999999954332220 000000 1123578999999999874443
|
|
| >PRK11712 ribonuclease G; Provisional | Back alignment and domain information |
|---|
Probab=86.09 E-value=1.4 Score=56.69 Aligned_cols=64 Identities=25% Similarity=0.390 Sum_probs=50.2
Q ss_pred CCCCCcEEEeEEEEEeec--eEEEEEecCceeEEeeccccCcc------------cccCcccccCCCCEEEEEEEEEec
Q 000173 1465 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSED------------HVDNIETIYRAGEKVKVKILKVDK 1529 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~--G~FV~l~~~~v~Gl~h~sels~~------------~~~~~~~~~~~Gd~V~~~Il~id~ 1529 (1935)
...+|+|+.|+|.+|.+. ++||.|+. +-.|++|++++... ....+.+.+++||.|-|.|++-..
T Consensus 35 ~~~vGnIY~G~V~~v~pg~~AAFVdIG~-~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~Ke~~ 112 (489)
T PRK11712 35 RGIVGNIYKGRVSRVLPGMQAAFVDIGL-DKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVKDPL 112 (489)
T ss_pred ccccccEEEEEEeecCCCCceeEEeeCC-CccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEeCCc
Confidence 456899999999999884 89999976 89999999988321 011235569999999999998543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.08 E-value=3.9 Score=45.66 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH------
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK------ 1760 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~------ 1760 (1935)
..|..++.+|.+.|+++.|.+.|.|+...... -..++++|+.++.+...++++ ..+.....+|-......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~d~--~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFGDW--SHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhccchHHHH
Confidence 67889999999999999999999998874432 334678999999999999954 88888888887665442
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 000173 1761 ---KVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1935)
Q Consensus 1761 ---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~ 1790 (1935)
.+|..+ .+...++|..|-++|-.+...|
T Consensus 113 nrlk~~~gL--~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGL--ANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHH--HHHHhchHHHHHHHHHccCcCC
Confidence 222222 2233566666666666655444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=86.03 E-value=3 Score=41.04 Aligned_cols=61 Identities=23% Similarity=0.455 Sum_probs=49.5
Q ss_pred ccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE
Q 000173 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556 (1935)
Q Consensus 488 ~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v 556 (1935)
.+++.+.+ ..|-+|.|+|..+...-++++++..+.++|+.... + .++|..|..|..|+...
T Consensus 14 S~fi~lG~-~~gk~V~G~I~hvv~ddLYIDfG~KFhcVc~rp~~------~-~~~y~~G~rV~lrLkdl 74 (104)
T PF10246_consen 14 SPFIQLGD-PEGKIVIGKIFHVVDDDLYIDFGGKFHCVCKRPAV------N-GEKYVRGSRVRLRLKDL 74 (104)
T ss_pred ChhhhcCC-ccCCEEEEEEEEEecCceEEEeCCceeEEEecccc------c-ccccccCCEEEEEECCH
Confidence 34566666 57999999999999999999999999999985432 2 25799999999998644
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins []. |
| >PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit | Back alignment and domain information |
|---|
Probab=85.97 E-value=2.4 Score=43.99 Aligned_cols=60 Identities=27% Similarity=0.211 Sum_probs=45.8
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc--cc-----------CCccccCCCCcEEEEEEEEEe
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG--YV-----------ESPEKEFPIGKLVAGRVLSVE 1437 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~--~~-----------~~~~~~f~~G~~V~~kVl~vd 1437 (1935)
+|+++.|+|++.+..|+.|.|+.--+.+|+...|... |- .+-.-.|..|+.|++||.++.
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~~ 75 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESEI 75 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEecccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEEE
Confidence 6999999999999999999999989999999998842 21 222235679999999998875
|
Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B. |
| >KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.66 E-value=1.8 Score=46.14 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=46.2
Q ss_pred CCCEEEEEEEEEecCceEEEe--------CCCeEEeecCCCCccc--cccCCCCCCCCCCEEEEEEEEE-eCCeEEEE
Q 000173 498 PGMVVKGKVIAVDSFGAIVQF--------PGGVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLGV-KSKRITVT 564 (1935)
Q Consensus 498 ~G~~v~g~V~~v~~~G~~V~l--------~~~v~g~vp~~hls~~--~~~~p~~~fkvG~~v~~rVL~v-~~~~i~lt 564 (1935)
.|++|.++|..++..=+-|+| .+.+.|+++...+-.. ...++-+.|++|+-|.|+|++. ....-.||
T Consensus 68 ~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~~y~LT 145 (193)
T KOG3409|consen 68 VGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGSNYLLT 145 (193)
T ss_pred cCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCCcEEEE
Confidence 477777777777665444443 3578899998766543 3345667899999999999987 33444444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.47 E-value=1.5 Score=34.09 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
.+|...|.++...|+++.|...|+++++..|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777778888888888888888888777763
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.24 E-value=1.4 Score=33.71 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS 1793 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~ 1793 (1935)
.++.++.+|.+.|++++|.+.|+++++.||++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45677778888888888888888888888764
|
|
| >KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription] | Back alignment and domain information |
|---|
Probab=84.48 E-value=5 Score=42.75 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=39.5
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc--cc--CCc-------cccCCCCcEEEEEEEEEeC
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG--YV--ESP-------EKEFPIGKLVAGRVLSVEP 1438 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~--~~--~~~-------~~~f~~G~~V~~kVl~vd~ 1438 (1935)
.|++|.|.|+.|.+.|+|+++|+ ++.++.---...+ |. +|| .....+|..|+.+|+.+.-
T Consensus 81 KGEVvdgvV~~Vnk~G~F~~~GP-l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~ 151 (170)
T KOG3298|consen 81 KGEVVDGVVTKVNKMGVFARSGP-LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRV 151 (170)
T ss_pred CCcEEEEEEEEEeeeeEEEeccc-eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEE
Confidence 59999999999999999999995 4444432222222 21 121 1245678888888877653
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.46 E-value=1.3e+02 Score=45.16 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC---C--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL---P--RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~---p--~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
.+-|.+....-... +..+-.-.+.|++-.. | +..-.+.|.++|++....|.+++|+..+-.|....+ ..+..
T Consensus 1629 sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~ 1706 (2382)
T KOG0890|consen 1629 SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVL 1706 (2382)
T ss_pred chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHH
Confidence 45676665544443 4444444555554433 1 123358999999999999999999999988887763 45888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----------hhHHHHHH----HHHHHHHHcCC--HHHHHHHHHHHHHHH
Q 000173 1868 IYLDQEIRLGDVDLIRGLFERAISLSLPP-----------KKMKFLFK----KYLEYEKSVGE--EERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1868 ~ya~~e~k~g~~e~ar~lferal~~~~~p-----------k~~k~l~~----~yl~~E~~~G~--~e~a~~v~~rAle~v 1930 (1935)
..|.+++..|+..+|..+++..++...+. +++ .++. ++-.|....|+ .+.+...|..|.+..
T Consensus 1707 E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~-~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1707 ERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL-LIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhh-hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence 88999999999999999999999733221 233 3444 22233333444 345667777776543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.77 E-value=1.1e+02 Score=38.78 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Q 000173 1746 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1746 a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~ 1822 (1935)
.+.+..|.+.+..+.-.|+.++++|.++ ..+.-..+++|+....-+....-..++..|.+.+.+.+..+|.+|+-.
T Consensus 85 veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yr 160 (711)
T COG1747 85 VEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence 3444455555555555555555555544 344444445544443322333233333322222444444555554443
|
|
| >PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit | Back alignment and domain information |
|---|
Probab=83.66 E-value=2.9 Score=43.44 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=41.6
Q ss_pred CCCEEEEEEEEEecCceEEEeCCCe-EEeecCCCCccc-cc------------cCCCCCCCCCCEEEEEEEEE
Q 000173 498 PGMVVKGKVIAVDSFGAIVQFPGGV-KALCPLPHMSEF-EI------------VKPGKKFKVGAELVFRVLGV 556 (1935)
Q Consensus 498 ~G~~v~g~V~~v~~~G~~V~l~~~v-~g~vp~~hls~~-~~------------~~p~~~fkvG~~v~~rVL~v 556 (1935)
+|+++.|+|++.+..|+.|+++ .+ +-+||...|-.- .. ..-+-.|..|+.|++||..+
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslg-FFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~ 74 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLG-FFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESE 74 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEEC-CEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEec-ccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEE
Confidence 6999999999999999999996 54 678998888532 11 11112358999999999988
|
Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=83.60 E-value=1.1e+02 Score=36.88 Aligned_cols=203 Identities=15% Similarity=0.141 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccc----c---ch--hhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Q 000173 1686 SFVWIKYMAFMLSMA-DVEKARSIAERALQTINI----R---EE--NEKLNIWVAYFNLENEYGNP-PEEAVVKVFQRAL 1754 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~-e~dkAr~v~erAl~~i~~----~---ee--~Ekl~lW~ayl~le~~~g~~-~~e~a~~vferAl 1754 (1935)
+....+++...+..+ +++.|...++||.+.++. . .+ .-++.+...+++.+...+.+ ..++|..+.+-+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 345566677777888 999999999999986432 1 11 12334555566666665532 1233444444443
Q ss_pred hcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCHHHHHHHHHHHHHh-CCCCChH
Q 000173 1755 QYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK---QQQEGVQAVVQRALLS-LPRHKHI 1829 (1935)
Q Consensus 1755 ~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~---~~~e~A~~ll~ralk~-~p~~~~~ 1829 (1935)
.-.+. ..++.-.+.+..+.++.+.+.+.+.+|+..+......|-.....+.. .....|...+...+.. +.....
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~- 193 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED- 193 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh-
Confidence 33344 37776777777779999999999999999876455555555555433 3555566666555443 222211
Q ss_pred HHHHHHHHHHH----Hc-CC------HHHHHHHHHHHHHhC--CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1830 KFISQTAILEF----KN-GV------ADRGRSMFEGILSEY--PKR--------TDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1830 ~~~~~~a~le~----~~-g~------~e~Ar~ife~al~~~--Pk~--------~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
. |..-+-+.. .. ++ .+....+++.+-+.. |-. .-+|+. +.-.++.++++.|...|+-
T Consensus 194 ~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 194 Q-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred H-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHH
Confidence 1 333332221 22 11 334444455433322 211 226776 6777889999999999998
Q ss_pred HHh
Q 000173 1889 AIS 1891 (1935)
Q Consensus 1889 al~ 1891 (1935)
++.
T Consensus 272 al~ 274 (278)
T PF08631_consen 272 ALH 274 (278)
T ss_pred HHH
Confidence 875
|
It is also involved in sporulation []. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.37 E-value=19 Score=41.21 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
.++.+|+|.++..|++-++...-..+|..+|.+.-.++.-+......=+.++|+.-|..++. +.|.-+
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldpsla 298 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPSLA 298 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChhhH
Confidence 56667777777777777777777777777777766666666666666666677777777776 555444
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.13 E-value=29 Score=44.42 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=97.4
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------hccccchhhHH---HHHHHHHHHHHH
Q 000173 1678 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ-----------------TINIREENEKL---NIWVAYFNLENE 1737 (1935)
Q Consensus 1678 ll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~-----------------~i~~~ee~Ekl---~lW~ayl~le~~ 1737 (1935)
+|..+|......++.+.+...+|+.+-|..+.+|||= ..+|.....|. -+| .||....+
T Consensus 276 lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~-r~m~~l~~ 354 (665)
T KOG2422|consen 276 LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALF-RYMQSLAQ 354 (665)
T ss_pred eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHH-HHHHHHHh
Confidence 4566799999999999999999998888888877773 22332222221 233 34544567
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHH-HHcCChHHHHHHHHHHHH--hcCC--CHHHHHHHHHHHHHc-C-
Q 000173 1738 YGNPPEEAVVKVFQRALQYCDPK--KVHLALLGLY-ERTEQNKLADELLYKMIK--KFKH--SCKVWLRRVQRLLKQ-Q- 1808 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~~~--~v~~~l~~i~-~~~~~~~~A~el~~~~~k--~~~~--~~~vw~~~~~~l~~~-~- 1808 (1935)
-| ...+|.+..+-.++..|.. -.-..++++| .++.+|+-..++++..-. ++.+ +...=+.+|.||+.. .
T Consensus 355 RG--C~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~ 432 (665)
T KOG2422|consen 355 RG--CWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEE 432 (665)
T ss_pred cC--ChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCCh
Confidence 78 4499999999999998873 2223334544 477888888888876632 1111 222234677777777 3
Q ss_pred --HHHHHHHHHHHHHhCC
Q 000173 1809 --QEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1809 --~e~A~~ll~ralk~~p 1824 (1935)
-+.|+.++.+|++.+|
T Consensus 433 ~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 433 DDRQSALNALLQALKHHP 450 (665)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 6788999999999988
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.06 E-value=0.82 Score=54.39 Aligned_cols=115 Identities=15% Similarity=0.001 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1773 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1851 (1935)
Q Consensus 1773 ~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~i 1851 (1935)
.|.++.|.+.|.+++.+.+.+..++-..+..+++. +...|..-+..|+.++|... .-|..-+..+..+|+.++|+..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa--~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA--KGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc--cccchhhHHHHHhhchHHHHHH
Q ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1852 FEGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1852 fe~al~~~Pk-~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
|+.+++..-+ ....|.. ...-..+.++.-|..++|+..
T Consensus 205 l~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 205 LALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHHH
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.66 E-value=1.6 Score=54.45 Aligned_cols=101 Identities=16% Similarity=0.035 Sum_probs=87.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000173 1769 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1847 (1935)
Q Consensus 1769 i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~ 1847 (1935)
-+...+.++.|..+|.+++...|+....|-+.+..+++. ++..|..=+.+|++..|.. ++.|..-|+.....+.+-+
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~--~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY--IKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh--hheeeeccHHHHhHHHHHH
Confidence 344567889999999999999999999999998888888 9999999999999998877 5899999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1848 GRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1848 Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
|...|+......|.+.++-..+..
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHH
Confidence 999999999999999887655443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.61 E-value=1.5e+02 Score=37.63 Aligned_cols=219 Identities=14% Similarity=0.165 Sum_probs=130.6
Q ss_pred HcCCHHHHHHHHHHHHHhccccchhh---HHHHHHH------HHHHHHHcCCCCHHHHHHHHHHHHhcC---CCH-----
Q 000173 1698 SMADVEKARSIAERALQTINIREENE---KLNIWVA------YFNLENEYGNPPEEAVVKVFQRALQYC---DPK----- 1760 (1935)
Q Consensus 1698 ~~~e~dkAr~v~erAl~~i~~~ee~E---kl~lW~a------yl~le~~~g~~~~e~a~~vferAl~~~---~~~----- 1760 (1935)
..|=+++|.++.++|+..+.--.+.+ +.-.-+. ...+....|++ .+|.+-...+++.+ |..
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~--~~al~~i~dm~~w~~r~p~~~Llr~ 364 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDY--VEALEEIVDMKNWCTRFPTPLLLRA 364 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhCCchHHHHH
Confidence 55668899999999987533211111 1111112 22233455743 66655555554433 431
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHH----HHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----
Q 000173 1761 ---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW----LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH---- 1828 (1935)
Q Consensus 1761 ---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw----~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~---- 1828 (1935)
.++.-++......+.+++|...|..+.+.- .+.++| +++|-.|+++ +.+.--+++++. .|.+.+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ss 440 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSS 440 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchH
Confidence 444444444456688999999999999875 344555 3566667766 555444444433 233221
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHH----HHHHHcCCHHHHHHHHHHHHhc--CCC
Q 000173 1829 ----IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL---WSIYL----DQEIRLGDVDLIRGLFERAISL--SLP 1895 (1935)
Q Consensus 1829 ----~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl---w~~ya----~~e~k~g~~e~ar~lferal~~--~~~ 1895 (1935)
..+++.+|-+.|.++++.+|+..+...|+.. +..|+ -..+. ......|+..+++++..-++.. +.+
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence 3688889999999999999999999999876 43332 22222 2334678988999888888762 344
Q ss_pred chhHHHHHHHHH--HHHHHcCC--HHHHHHHHH
Q 000173 1896 PKKMKFLFKKYL--EYEKSVGE--EERIEYVKQ 1924 (1935)
Q Consensus 1896 pk~~k~l~~~yl--~~E~~~G~--~e~a~~v~~ 1924 (1935)
.-.. .+|..-+ ++....|+ .+...+.|.
T Consensus 520 Di~v-qLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 520 DIPV-QLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred CchH-HHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3333 6777655 56666777 444444443
|
|
| >KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.38 E-value=5.9 Score=42.49 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=53.2
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEEC--------CCcEEEEEccccCCCCcchhhccccCCCCCEEEEEEEEEeCCCcEE
Q 000173 1161 VSIGQRVTGYVYKVDNEWALLTIS--------RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230 (1935)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~l~v~l~--------~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~~d~~~~~~ 1230 (1935)
...|++|++.|..+...++-++|. ...+|.|+.-++-..-.+.-.+.+.|.+|+.|.|+|++.+.+.+.+
T Consensus 66 P~~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~~y~ 143 (193)
T KOG3409|consen 66 PFVGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGSNYL 143 (193)
T ss_pred CccCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCCcEE
Confidence 478999999999999988877662 2568999887764433333456788999999999999966554433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.18 E-value=42 Score=45.54 Aligned_cols=125 Identities=12% Similarity=0.143 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL---RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~---~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
|-..+++.+++|-+..|.+.|.....+-..-..... .+..-++.. .++.+.+.+..++..+-.. .+++..+.|.-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~Nirq-NlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQ-NLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-hhHHHHHHHHH
Confidence 888899999999999999888766544321111111 122223333 7888888888887765332 35666666665
Q ss_pred HHHcCCHHHHHHHHHH------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1839 EFKNGVADRGRSMFEG------------ILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1839 e~~~g~~e~Ar~ife~------------al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
+..+=-.+.-.++||. .+-.+..+.++.++|++...+.|.+.++..+-..
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 5544444555555554 3555677889999999999999988877665543
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.66 E-value=63 Score=40.71 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHc--CHHHHHHHHHHHHHh---CCCC--ChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC----H
Q 000173 1796 VWLRRVQRLLKQ--QQEGVQAVVQRALLS---LPRH--KHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKR----T 1863 (1935)
Q Consensus 1796 vw~~~~~~l~~~--~~e~A~~ll~ralk~---~p~~--~~~~~~~~~a~le~~~g-~~e~Ar~ife~al~~~Pk~----~ 1863 (1935)
..++++..++.. +++.|+.-+++|+-. .|.. ...+.+..+|+++.... ....|+.++.++++..... .
T Consensus 48 t~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsc 127 (629)
T KOG2300|consen 48 THLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSC 127 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhH
Confidence 344555555554 666666666666433 2322 11345566666666554 5666666666666554332 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1864 DLWSIYLDQEIRLGDVDLIRGLF 1886 (1935)
Q Consensus 1864 dlw~~ya~~e~k~g~~e~ar~lf 1886 (1935)
.+.++++++..-..|+.-|..++
T Consensus 128 kllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 128 KLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHHHHHHHHhhhccchhHHHHH
Confidence 24455555555556666666553
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.66 E-value=15 Score=44.65 Aligned_cols=222 Identities=12% Similarity=0.040 Sum_probs=128.6
Q ss_pred cCCCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hccccchhhHHHHHHHHHHHHHHc
Q 000173 1666 KDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQ---TINIREENEKLNIWVAYFNLENEY 1738 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s----~~lW~~y~~~~l~~~e~dkAr~v~erAl~---~i~~~ee~Ekl~lW~ayl~le~~~ 1738 (1935)
++-...++.|+.+++.--++ +.+|.++...|.-++++++|.+.-.--|. ++..+...- ...-.+.|.....
T Consensus 31 gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA--KssgNLGNtlKv~ 108 (639)
T KOG1130|consen 31 GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA--KSSGNLGNTLKVK 108 (639)
T ss_pred cchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc--cccccccchhhhh
Confidence 44556677888888765443 45566666666677777777664432221 112111000 1111233444455
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHHhcCCCHHHHH
Q 000173 1739 GNPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ-------------NKLADELLYKMIKKFKHSCKVWL 1798 (1935)
Q Consensus 1739 g~~~~e~a~~vferAl~~~~~-------~~v~~~l~~i~~~~~~-------------~~~A~el~~~~~k~~~~~~~vw~ 1798 (1935)
|.+ ++|.-...|-|..... ...++.++++|...|+ .+++.+.|+.+.+-|..+.++-.
T Consensus 109 G~f--deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 109 GAF--DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred ccc--chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 6666666665544321 2778888888865543 46777788888776654444433
Q ss_pred HHHH-------------HHHHc-CHHHHHHHHHHHHHh---CCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 000173 1799 RRVQ-------------RLLKQ-QQEGVQAVVQRALLS---LPRH-KHIKFISQTAILEFKNGVADRGRSMFEGILSEY- 1859 (1935)
Q Consensus 1799 ~~~~-------------~l~~~-~~e~A~~ll~ralk~---~p~~-~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~- 1859 (1935)
.++. .|+-. +++.|....+.-|.. +..+ ..-.++.++|..+.-.|+++.|.+.|.+.+...
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 3333 33333 677766555433322 2221 112678888888988999999999999987542
Q ss_pred --CCC-HH--HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1860 --PKR-TD--LWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1860 --Pk~-~d--lw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..+ .. -.+.++..+.-..+++.|..+|.|-+.
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA 303 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 222 22 345555566666677778888877554
|
|
| >PRK12442 translation initiation factor IF-1; Reviewed | Back alignment and domain information |
|---|
Probab=81.44 E-value=5.6 Score=38.15 Aligned_cols=65 Identities=23% Similarity=0.206 Sum_probs=50.9
Q ss_pred EEEeEEEEEeeceEEE-EEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1471 IVIGQIKRVESYGLFI-TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1471 ~v~G~V~~v~~~G~FV-~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
.+.|.|+.+.+.+.|. .|++ +..=++|+|-- +..-.-..-+||.|++.+-..|.+++||..-.|.
T Consensus 8 e~~G~V~e~Lp~~~frV~Len-G~~vla~isGK----mR~~rIrIl~GD~V~VE~spYDltkGRIiyR~~~ 73 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLEN-GVEVGAYASGR----MRKHRIRILAGDRVTLELSPYDLTKGRINFRHKD 73 (87)
T ss_pred EEEEEEEEECCCCEEEEEeCC-CCEEEEEeccc----eeeeeEEecCCCEEEEEECcccCCceeEEEEecC
Confidence 3789999999888775 7876 78888998742 2221224679999999999999999999987764
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.30 E-value=64 Score=36.58 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=57.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCC-
Q 000173 1749 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRH- 1826 (1935)
Q Consensus 1749 vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~-~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~- 1826 (1935)
+.+..-...++.-+|+.+.+ -..+.|+..|-.+-..- -+.+.+.+.+|.||.+.+.++|..+|-++|...+..
T Consensus 100 L~~~tk~S~dP~llYy~Wsr-----~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~ 174 (203)
T PF11207_consen 100 LQEETKNSQDPYLLYYHWSR-----FGDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDD 174 (203)
T ss_pred HHHHHccCCCccHHHHHhhc-----cCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCC
Confidence 33333333344455554432 23445666666655433 256777777777777667777777777777766443
Q ss_pred -ChHHHHHHHHHHHHHcCCHHHH
Q 000173 1827 -KHIKFISQTAILEFKNGVADRG 1848 (1935)
Q Consensus 1827 -~~~~~~~~~a~le~~~g~~e~A 1848 (1935)
-+++++..+|.++++.|+++.|
T Consensus 175 ~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 175 NFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCHHHHHHHHHHHHHhcchhhh
Confidence 2357777777777777777765
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.45 E-value=8.7 Score=45.86 Aligned_cols=97 Identities=16% Similarity=-0.013 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKH----SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1837 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~----~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~ 1837 (1935)
|-.-++-|.+..+|..|.+.|...++.-.. +..+|.+.+...+.. ++..|..-..+|++..|.+ .+.+++-|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--LKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhhhhhhhH
Confidence 444568888999999999999999987643 355677777777777 8999999999999998877 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1838 LEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1838 le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
.++....+..|..+.+..++.+-.
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999998888766543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=80.43 E-value=47 Score=41.64 Aligned_cols=168 Identities=17% Similarity=0.131 Sum_probs=98.4
Q ss_pred HhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCC-CCChHHH
Q 000173 1754 LQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLP-RHKHIKF 1831 (1935)
Q Consensus 1754 l~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p-~~~~~~~ 1831 (1935)
++.+|.. ...++++.++.+.|++..|.++.++|+-.|.....-.+ ..+......-.+|=-|. .+ ++.-..+
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F--~~~~~~~~~g~~rL~~~-----~~eNR~ffla 105 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSF--SPFRSNLTSGNCRLDYR-----RPENRQFFLA 105 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh--hhhhcccccCccccCCc-----cccchHHHHH
Confidence 3555665 88888888999999999999999999865421111000 00000000000000000 00 1111356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhc------CCCchhHHHHH
Q 000173 1832 ISQTAILEFKNGVADRGRSMFEGILSEYPK-RTDLWSIYLDQE-IRLGDVDLIRGLFERAISL------SLPPKKMKFLF 1903 (1935)
Q Consensus 1832 ~~~~a~le~~~g~~e~Ar~ife~al~~~Pk-~~dlw~~ya~~e-~k~g~~e~ar~lferal~~------~~~pk~~k~l~ 1903 (1935)
...+.+.+.+.|-+.-|.++..-++..+|. +.---.-++|++ ++.++++-...+++..... ...|. +.|
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~a~ 182 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---FAF 182 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---HHH
Confidence 677888888999999999999999999998 554444455544 4778888777777765541 01221 345
Q ss_pred HHHHHHHHHcC--------------CHHHHHHHHHHHHHHHH
Q 000173 1904 KKYLEYEKSVG--------------EEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1904 ~~yl~~E~~~G--------------~~e~a~~v~~rAle~v~ 1931 (1935)
..-+.+..... +.+.|.....+|+....
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 55444433222 23778888888886554
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=80.04 E-value=55 Score=45.52 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1742 PEEAVVKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~--~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
.++--.+-|++||...-. .+.|-...++-.+.+.|.+|..+|.--..+ ...++..||..+.+. .+++|.-.|++
T Consensus 888 ~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Ye~ 964 (1265)
T KOG1920|consen 888 KIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMYER 964 (1265)
T ss_pred eHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 466677778888766543 256777777777888888887777655543 356677777777777 77777777766
Q ss_pred HH
Q 000173 1819 AL 1820 (1935)
Q Consensus 1819 al 1820 (1935)
+-
T Consensus 965 ~G 966 (1265)
T KOG1920|consen 965 CG 966 (1265)
T ss_pred hc
Confidence 53
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1935 | ||||
| 3bzc_A | 785 | Crystal Structure Of The Tex Protein From Pseudomon | 1e-06 | ||
| 2oce_A | 780 | Crystal Structure Of Tex Family Protein Pa5201 From | 1e-06 | ||
| 2oce_A | 780 | Crystal Structure Of Tex Family Protein Pa5201 From | 1e-06 | ||
| 2k4k_A | 130 | Solution Structure Of Gsp13 From Bacillus Subtilis | 1e-06 | ||
| 1q8k_A | 308 | Solution Structure Of Alpha Subunit Of Human Eif2 L | 9e-05 | ||
| 3cdi_A | 723 | Crystal Structure Of E. Coli Pnpase Length = 723 | 9e-05 | ||
| 1yz6_A | 274 | Crystal Structure Of Intact Alpha Subunit Of Aif2 F | 1e-04 | ||
| 3aev_A | 275 | Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex | 1e-04 | ||
| 1wi5_A | 119 | Solution Structure Of The S1 Rna Binding Domain Fro | 2e-04 | ||
| 1sro_A | 76 | S1 Rna Binding Domain, Nmr, 20 Structures Length = | 2e-04 |
| >pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas Aeruginosa, Crystal Form I Length = 785 | Back alignment and structure |
|
| >pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From Pseudomonas Aeruginosa Length = 780 | Back alignment and structure |
|
| >pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From Pseudomonas Aeruginosa Length = 780 | Back alignment and structure |
|
| >pdb|2K4K|A Chain A, Solution Structure Of Gsp13 From Bacillus Subtilis Length = 130 | Back alignment and structure |
|
| >pdb|1Q8K|A Chain A, Solution Structure Of Alpha Subunit Of Human Eif2 Length = 308 | Back alignment and structure |
|
| >pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase Length = 723 | Back alignment and structure |
|
| >pdb|1YZ6|A Chain A, Crystal Structure Of Intact Alpha Subunit Of Aif2 From Pyrococcus Abyssi Length = 274 | Back alignment and structure |
|
| >pdb|3AEV|A Chain A, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From Pyrococcus Horikoshii Ot3 Length = 275 | Back alignment and structure |
|
| >pdb|1WI5|A Chain A, Solution Structure Of The S1 Rna Binding Domain From Human Hypothetical Protein Baa11502 Length = 119 | Back alignment and structure |
|
| >pdb|1SRO|A Chain A, S1 Rna Binding Domain, Nmr, 20 Structures Length = 76 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 2e-49
Identities = 43/269 (15%), Positives = 102/269 (37%), Gaps = 31/269 (11%)
Query: 1688 VWIKYMAFMLS--------MADVEKARSIAERALQ-----------TINIREENEKLNIW 1728
+W KY+ + S ++ E+ L E++ KL
Sbjct: 10 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 69
Query: 1729 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--KVHLALLGLYERTEQNKLADELLYKM 1786
N + + +++RA+ K ++ A E + + + ++
Sbjct: 70 KGDMNNAKLFSDEAAN----IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125
Query: 1787 IKKFK-HSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NG 1843
+ V+++ ++ + + + + + ++A H+ + A++E+ +
Sbjct: 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA--ALMEYYCSK 183
Query: 1844 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI-SLSLPPKKMKFL 1902
+FE L +Y + Y+D L + + R LFER + S SLPP+K +
Sbjct: 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243
Query: 1903 FKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931
+ ++L +E ++G+ I V+++
Sbjct: 244 WARFLAFESNIGDLASILKVEKRRFTAFR 272
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 2e-15
Identities = 38/269 (14%), Positives = 87/269 (32%), Gaps = 28/269 (10%)
Query: 1648 EKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS-SPNSSFVWIKYMAFMLSMADVEKAR 1706
++ + + + + + +ER + + + ++ Y + S EK
Sbjct: 60 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 119
Query: 1707 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1766
SI R L E+ + +++ Y ++ +F++A + +
Sbjct: 120 SIYNRLLA----IEDIDPTLVYIQYMKFARRAEGI--KSGRMIFKKAREDARTRHHVYVT 173
Query: 1767 LGLYERTEQN--KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL--L 1821
L E +A ++ +KK+ + L + L + + + +R L
Sbjct: 174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233
Query: 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1881
SLP K + ++ E G + + + + + + L
Sbjct: 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETAL----------- 282
Query: 1882 IRGLFERAISLSLPPKKMKFLFKKYLEYE 1910
L +R + L P L K L Y+
Sbjct: 283 ---LVDRYKFMDLYPCSASEL--KALGYK 306
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 4e-14
Identities = 26/218 (11%), Positives = 74/218 (33%), Gaps = 30/218 (13%)
Query: 1720 EENEKLNIWVAYFNLENEYGNPPEEA------VVKVFQRALQYCDPKKVHLALLGLYERT 1773
+E +++++W Y E E+ V+ +++ L
Sbjct: 3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---------------- 46
Query: 1774 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFI 1832
++ Y+ + + S K+ + + + + +RA+ +L K++
Sbjct: 47 ---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLY 102
Query: 1833 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-WSIYLDQEIRLGDVDLIRGLFERAIS 1891
A E ++ S++ +L+ L + Y+ R + R +F++A
Sbjct: 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162
Query: 1892 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929
+ ++ +EY ++ + + ++
Sbjct: 163 -DARTRHHVYVTAALMEY-YCSKDKSVAFKIFELGLKK 198
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 5e-12
Identities = 26/200 (13%), Positives = 58/200 (29%), Gaps = 28/200 (14%)
Query: 1642 RHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD 1701
+A +E + +++ + RLL + + + V+I+YM F
Sbjct: 104 AYADYEESRMKYEKVHSIYNRLLAIE--------------DIDPTLVYIQYMKFARRAEG 149
Query: 1702 VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1761
++ R I ++A + R +V +E A K+F+ L+
Sbjct: 150 IKSGRMIFKKAREDARTRHHV-----YVTAALMEYYCSKDKSVA-FKIFELGLKKY-GDI 202
Query: 1762 VHL--ALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQQ--QEGVQA 1814
A + ++ L +++ R +
Sbjct: 203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262
Query: 1815 VVQRALLSLPRHKHIKFISQ 1834
V +R + K +
Sbjct: 263 VEKRRFTAFREEYEGKETAL 282
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 4e-11
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 8/147 (5%)
Query: 1627 QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAE-ERLLEKDAPRTPDEFERLVRSSPNS 1685
+ I +K A++ + + AA E KD FE ++ +
Sbjct: 147 AEGIKSGRMIFKK----AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 202
Query: 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745
+ Y+ ++ + + R + ER L + ++ E IW + E+ G+ +
Sbjct: 203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE-IWARFLAFESNIGD--LAS 259
Query: 1746 VVKVFQRALQYCDPKKVHLALLGLYER 1772
++KV +R + L +R
Sbjct: 260 ILKVEKRRFTAFREEYEGKETALLVDR 286
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 22/179 (12%)
Query: 1623 ISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAA--EERLLEKDAPRTPDEFERLVR 1680
+++ ++ +I NR ++ + I+ R + R F++
Sbjct: 108 YEESRMKYEKVHSI---YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR--MIFKKARE 162
Query: 1681 SSPNSSFVWIKYMAFMLSMA--DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1738
+ V++ A M D A I E L+ E +AY + +
Sbjct: 163 DARTRHHVYVTA-ALMEYYCSKDKSVAFKIFELGLKKYGDIPE-----YVLAYIDYLSHL 216
Query: 1739 GNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQN----KLADELLYKMIKKFKH 1792
+ +F+R L P + + + E N ++ + F+
Sbjct: 217 NE--DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 2e-38
Identities = 46/332 (13%), Positives = 119/332 (35%), Gaps = 36/332 (10%)
Query: 1625 QNQGHTDEAKTIDEKNNRHAKKKEK-EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSP 1683
+ K I++++ + + +E E ++ + TP E
Sbjct: 176 EGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE--------A 227
Query: 1684 NSSFVWIKYMAFMLSMAD--------VEKARSIAERALQTIN---------IREENEKLN 1726
+W KY+ + S ++ E+ L + + +
Sbjct: 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK 287
Query: 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--KVHLALLGLYERTEQNKLADELLY 1784
+ ++ N + +++RA+ K ++ A E + + +
Sbjct: 288 LLAEKGDMNNAKLFS--DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN 345
Query: 1785 KMIKKFKHSC-KVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFK- 1841
+++ V+++ ++ + + + + + ++A H+ A++E+
Sbjct: 346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV--TAALMEYYC 403
Query: 1842 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS-LSLPPKKMK 1900
+ +FE L +Y + Y+D L + + R LFER ++ SLPP+K
Sbjct: 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463
Query: 1901 FLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932
++ ++L +E ++G+ I V+++
Sbjct: 464 EIWARFLAFESNIGDLASILKVEKRRFTAFRE 495
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 89.5 bits (221), Expect = 3e-18
Identities = 40/278 (14%), Positives = 91/278 (32%), Gaps = 40/278 (14%)
Query: 1656 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1715
IR A+ + ++ + +ERLV P+S W Y+ + + +K + +R L
Sbjct: 20 IREAQNQPID----KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75
Query: 1716 INIREENEKLNIWVAYFN-LENEYGNPPE--EAVVKVFQRALQYCDPKKVHLALLGLYER 1772
+ +++W Y + + G P E + + + AL + + + Y
Sbjct: 76 VL------HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY-- 127
Query: 1773 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFI 1832
F + + Q+ V+ V QR ++ P +
Sbjct: 128 ---------------INFLKGVEAVGSYAE---NQRITAVRRVYQRGCVN-PMINIEQLW 168
Query: 1833 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892
E + + + + + + + E + L R
Sbjct: 169 RDYNKYEEGINIHLAKKMIED----RSRDYMNARRVAKEYETVMK--GLDRNAPSVPPQN 222
Query: 1893 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930
+ + ++KKY+++EKS + + K + +
Sbjct: 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 2e-07
Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 12/150 (8%)
Query: 1782 LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKH--IKFISQTAILE 1839
+ K +++ + W ++ Q + + +R + P +I E
Sbjct: 1 MAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIE----AE 56
Query: 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-----GDVDLIRGLFERAISLSL 1894
K D+ +F+ L + DLW YL + + ++ A+
Sbjct: 57 IKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIG 115
Query: 1895 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1924
++ Y+ + K V ++
Sbjct: 116 MEIMSYQIWVDYINFLKGVEAVGSYAENQR 145
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 8e-04
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 1851 MFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910
M E L E P D WSI + +E + +D R +ER ++ P + +K Y+E E
Sbjct: 1 MAEKKLEENPYDLDAWSILI-REAQNQPIDKARKTYERLVAQF--PSSGR-FWKLYIEAE 56
Query: 1911 KSVGEEERIEYVKQKAMEYVES 1932
+++E + Q+ + V
Sbjct: 57 IKAKNYDKVEKLFQRCLMKVLH 78
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 149 bits (376), Expect = 7e-37
Identities = 48/473 (10%), Positives = 136/473 (28%), Gaps = 49/473 (10%)
Query: 1497 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEE 1556
++ E IE + ++ + I+ K + + + +
Sbjct: 109 LEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQ 168
Query: 1557 ESDEAIEEVGSYNRSS-----LLENSSVAVQDMDMESEDGGSLVLAQIESRA-SVPPLEV 1610
+++ + S + + ++ E + ++ P +
Sbjct: 169 AFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCL 228
Query: 1611 NLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEK-EEREQEIRAAEERLLEKDAP 1669
++ Q+ + I E + ++ + ++ + + L
Sbjct: 229 ESMWQR---YTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285
Query: 1670 RTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADVEKARSIAERALQTINIREEN 1722
T + +W++++ + + + +A Q + E
Sbjct: 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPE- 344
Query: 1723 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADE 1781
IW N + E + K + Q + + +L YE + +
Sbjct: 345 ----IWFNMANYQGEKNTD-STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIET 399
Query: 1782 LLYKMIKKF----------------------KHSCKVWLRRVQRLLKQQQ-EGVQAVVQR 1818
+ I + V+ + + + Q + + +
Sbjct: 400 TILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459
Query: 1819 ALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877
++ + A +E+ + + E L + + + YLD I +
Sbjct: 460 CRRLKKLVTPDIYL-ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518
Query: 1878 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930
+ ++ LFE +I +K +F+K + +E VG + ++++ E
Sbjct: 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 68.5 bits (166), Expect = 2e-11
Identities = 35/315 (11%), Positives = 91/315 (28%), Gaps = 51/315 (16%)
Query: 1648 EKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1707
++ R + +D + ++ P F+++K + +S+ ++
Sbjct: 28 QQMGRGSMSTSLRPTSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYE 87
Query: 1708 IAERALQTINIREENEKLNIWVAYFNLE-NEYGNPPEEAVVKVFQRALQYC-DPKKVHLA 1765
++ + NIW +LE ++ + V R L + L
Sbjct: 88 TFDKLHDRFPLMA-----NIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142
Query: 1766 LLGLYERTEQNKLADEL--------------LYKMIKKFKHSCKVWLRRVQRLL------ 1805
L + ++N + + K S + W + L
Sbjct: 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202
Query: 1806 ----KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-P 1860
+Q+ + ++ + + L + + D + + E
Sbjct: 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQ------RYTQWEQDVNQLTARRHIGELSA 256
Query: 1861 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK------KMKFLFKKYLEYEKS-- 1912
+ + S+Y D + + + S PK + ++ +++ +E
Sbjct: 257 QYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNK 316
Query: 1913 -----VGEEERIEYV 1922
+ R+ YV
Sbjct: 317 LELSDDLHKARMTYV 331
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 137 bits (345), Expect = 7e-34
Identities = 43/310 (13%), Positives = 94/310 (30%), Gaps = 31/310 (10%)
Query: 1631 DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1690
+ + + + N+ KK + +++ +R + +
Sbjct: 128 KDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQ-----PLIRGWSVKNAARLIDLE 182
Query: 1691 KYMAFML-SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1749
L + I L + EE ++ Y G E KV
Sbjct: 183 MENGMKLGGRPHESRMHFIHNYILDSFYYAEE-----VYFFYSEYLIGIGQK--EKAKKV 235
Query: 1750 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC------KVWLRRVQR 1803
+R ++ D + L + + + + + +
Sbjct: 236 VERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295
Query: 1804 LLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPK 1861
+LK++ E + + A +E+ G ++F L ++P
Sbjct: 296 VLKKRGLELFRKLFIELGNEGVGPHVFI---YCAFIEYYATGSRATPYNIFSSGLLKHPD 352
Query: 1862 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1921
T L + +R+GD + R LF+R +K ++ +EYE VG E
Sbjct: 353 STLLKEEFFLFLLRIGDEENARALFKRL-------EKTSRMWDSMIEYEFMVGSMELFRE 405
Query: 1922 VKQKAMEYVE 1931
+ + M+ ++
Sbjct: 406 LVDQKMDAIK 415
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 90.3 bits (223), Expect = 1e-18
Identities = 40/283 (14%), Positives = 87/283 (30%), Gaps = 38/283 (13%)
Query: 1674 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1733
+ E + +S +++ + D S+ R L+ N L W+ Y
Sbjct: 2 DAEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY----NLDL--WMLYIE 55
Query: 1734 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL---------------------GLYER 1772
+ + + +V++ L + L Y R
Sbjct: 56 YVRKVSQKKFK-LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMR 114
Query: 1773 TEQNKLAD-ELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKF 1831
Q + L+K + F+ + + + L R +K
Sbjct: 115 ALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174
Query: 1832 ISQTAILEFKNG-------VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1884
++ LE +NG R + IL + +++ Y + I +G + +
Sbjct: 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKK 234
Query: 1885 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927
+ ER I + L+ + E++V + + +Y +A
Sbjct: 235 VVERGI--EMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAE 275
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 5e-05
Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 20/145 (13%)
Query: 1797 WLRRVQRLLKQQQ-EGVQAVVQRALLSLPR----HKHIKFISQTAILEFKNGVADRGRSM 1851
+ +RL + ++++ R L +I+++ + + +
Sbjct: 17 IMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYV------RKVSQKKFKLYEV 70
Query: 1852 FEGILSE---YPKRTDLWSIYLD----QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1904
+E L + Y L+ Y++ E ++ IR + RA L P + L+K
Sbjct: 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRA--LQTPMGSLSELWK 128
Query: 1905 KYLEYEKSVGEEERIEYVKQKAMEY 1929
+ +E + + + V +
Sbjct: 129 DFENFELELNKITGKKIVGDTLPIF 153
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 119 | Back alignment and structure |
|---|
Score = 93.9 bits (233), Expect = 1e-22
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
+ + LS E ++ GM+LT V S+EDHGY++ G+ FLP E N G
Sbjct: 8 KNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAK 67
Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL 319
+K G L +V + VV LS VS + + + +++ L
Sbjct: 68 LKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNL 113
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 119 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVK-PGKKFKVGA 547
V + +KPGM++ G V +++ G +V G +A PL E+ K G K KVG
Sbjct: 13 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQ 72
Query: 548 ELVFRVLGVKS--KRITVTHKKTLVKSKLA 575
L V VK ++++ + V + +A
Sbjct: 73 YLNCIVEKVKGNGGVVSLSVGHSEVSTAIA 102
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 119 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-07
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLV 1429
E L P M++ G V ++ G + + L + Y ++ + +G+ +
Sbjct: 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYL 74
Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1464
V V+ V +++ S+ TA +E + +
Sbjct: 75 NCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWN 109
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 119 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 3e-06
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKV 1520
+ L G ++ G + +E +G + I + + E N + G+ +
Sbjct: 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYL 74
Query: 1521 KVKILKVDKEKRRISLGMKSSYFKN 1545
+ KV +SL + S
Sbjct: 75 NCIVEKVKGNGGVVSLSVGHSEVST 99
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 119 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 8e-06
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSV 812
A + P ++ G V ++ + G V + F P KA + R + VGQ +
Sbjct: 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYL 74
Query: 813 RSNILDVNSETGRITLSLKQSCCSSTDAS 841
+ V G ++LS+ S S+ A+
Sbjct: 75 NCIVEKVKGNGGVVSLSVGHSEVSTAIAT 103
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 119 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-05
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 587 LITHGWITKIEKHGCFVRF-YNGVQGFAPRSELGLD-PGCEPSSMYHVGQVVKCRIMSSI 644
++ G ++ +E HG V +G + F P + + VGQ + C +
Sbjct: 23 MLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVK 82
Query: 645 PASRRINLSFMMKPTRVSE 663
++LS + + VS
Sbjct: 83 GNGGVVSLS--VGHSEVST 99
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 1e-20
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1522
++ G IV G++ V++ G + + + + G SE S D V++ + G++V+
Sbjct: 26 VALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEA 84
Query: 1523 KILKVDKEKRRISLGMK 1539
K VD++ R ISL ++
Sbjct: 85 KFTGVDRKNRAISLSVR 101
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 3e-08
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
+ K G +V GKV AVD+ GA V+ GV+ S + VG E+ +
Sbjct: 27 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 86
Query: 554 LGV--KSKRITVTHK 566
GV K++ I+++ +
Sbjct: 87 TGVDRKNRAISLSVR 101
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 7e-07
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
I G +T ++ G V +GV+G+ SE D + + + VG V+ + +
Sbjct: 34 IVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKN 93
Query: 648 RRINLS 653
R I+LS
Sbjct: 94 RAISLS 99
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 36/130 (27%)
Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
+ + + L WV G+
Sbjct: 1 MGSSHHHHHHSSGLVP---------------RGSHMFN------------NWVALNKKGA 33
Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
++ GKV + G V + V G++ + + VE G ++A V +
Sbjct: 34 IVTGKVTAVDAKGATVELAD--GVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDR 91
Query: 930 AERLVDLSLK 939
R + LS++
Sbjct: 92 KNRAISLSVR 101
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 6e-06
Identities = 15/76 (19%), Positives = 32/76 (42%)
Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
+ IV G V V +KG + L+ ++ + S S VE +G V +
Sbjct: 26 VALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAK 85
Query: 1433 VLSVEPLSKRVEVTLK 1448
V+ ++ + ++++
Sbjct: 86 FTGVDRKNRAISLSVR 101
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 751 QLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
S + ++V G V + G V + G+ S+A + D +
Sbjct: 16 PRGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLV 75
Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQ 832
VG V + V+ + I+LS++
Sbjct: 76 LSVGDEVEAKFTGVDRKNRAISLSVRA 102
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Length = 130 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 4e-19
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1523
+ VG + G++ +++YG F+ ++ GL H+SE++ V +I G++V+VK
Sbjct: 3 AKFEVGSVYTGKVTGLQAYGAFVALDE-ETQGLVHISEVTHGFVKDINEHLSVGDEVQVK 61
Query: 1524 ILKVDKEKRRISLGMK 1539
+L VD+EK +ISL ++
Sbjct: 62 VLAVDEEKGKISLSIR 77
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Length = 130 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 5e-11
Identities = 18/131 (13%), Positives = 49/131 (37%), Gaps = 7/131 (5%)
Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433
+ G V + + G F+ L + V +S ++ G+V+ + +G V +V
Sbjct: 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKV 62
Query: 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
L+V+ ++ ++++ + + + + + F T+++ L
Sbjct: 63 LAVDEEKGKISLSIRATQAAPEKKES------KPRKPKAAQVSEEASTPQGFNTLKD-KL 115
Query: 1494 VGLCHVSELSE 1504
+S +
Sbjct: 116 EEWIEMSNRKD 126
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Length = 130 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 19/127 (14%), Positives = 44/127 (34%), Gaps = 7/127 (5%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
+ + G V GKV + ++GA V + L + ++ + + VG E+ +V
Sbjct: 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKV 62
Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
L V + +I+++ + T + + F + ++
Sbjct: 63 LAVDEEKGKISLSIRATQAAPEKKESKPRKPKAA-----QVSEEASTPQGFNTLKDKLEE 117
Query: 612 FAPRSEL 618
+ S
Sbjct: 118 WIEMSNR 124
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Length = 130 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 5e-07
Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
Query: 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 815
A+ SV G V + G FV G S+ G D+++ VG V+
Sbjct: 2 AAKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVK 61
Query: 816 ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-I 874
+L V+ E G+I+LS++ Q +E + E +GF +
Sbjct: 62 VLAVDEEKGKISLSIRA----------TQAAPEKKESKPRKPKAAQVSEEASTPQGFNTL 111
Query: 875 GSVIEGKVHESND 887
+E + SN
Sbjct: 112 KDKLEEWIEMSNR 124
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Length = 130 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
+ G +T ++ +G FV QG SE+ + + VG V+ ++++
Sbjct: 10 VYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEK 69
Query: 648 RRINLS 653
+I+LS
Sbjct: 70 GKISLS 75
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 3e-18
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1468 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
V D+V+ ++ + G ++++ E N+ G+ +SELS + +I + R G V +++
Sbjct: 15 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 74
Query: 1527 VDKEKRRISLGMK 1539
VDKEK I L +
Sbjct: 75 VDKEKGYIDLSKR 87
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 8e-09
Identities = 14/113 (12%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ VV V ++ GA V ++ + L +S I K ++G V+
Sbjct: 14 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVI 73
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
V + I ++ ++ + + + ++ + + + + + +
Sbjct: 74 RVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSK---TVYSILRHVAEVLEYTKD 123
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 26/168 (15%), Positives = 61/168 (36%), Gaps = 15/168 (8%)
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRK--LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
+V V+++ G ++ L ++ +LLS LS + S K IG+ V+
Sbjct: 15 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 74
Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1495
V+ ++++ + R + + I V ++ V + E L
Sbjct: 75 VDKEKGYIDLSKR----RVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDE--QLES 128
Query: 1496 LCHVS--ELSEDHVDNIETIYRAGEKVK-----VKILKVDKEKRRISL 1536
L + + + Y A + + L +++++R + +
Sbjct: 129 LFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLI 176
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 588 ITHGWITKIEKHGCFVRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
+ + I + G +V YN ++G SEL + + +G+ ++
Sbjct: 18 VVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDK 77
Query: 646 ASRRINLSFMMKPTRVSEDDLV------KLGSLVSGVVDVVT 681
I+LS + RVS ++ + V ++ V
Sbjct: 78 EKGYIDLS--KR--RVSPEEAIKCEDKFTKSKTVYSILRHVA 115
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 761 PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
VV V +I E G +V L + G S+ + ++K +G++ ++
Sbjct: 15 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 74
Query: 819 VNSETGRITLSLKQ 832
V+ E G I LS ++
Sbjct: 75 VDKEKGYIDLSKRR 88
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 874 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 926
+ V+ V + G VS E++++ G I +L+ + S G ++
Sbjct: 15 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 74
Query: 927 VAKAERLVDLSLKTVFIDRFREA 949
V K + +DLS + V + +
Sbjct: 75 VDKEKGYIDLSKRRVSPEEAIKC 97
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Length = 175 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 1e-17
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1468 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
+ DIV+ ++++ G ++ + E N+ G+ +SELS + +I+ + R G+ +L+
Sbjct: 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLR 74
Query: 1527 VDKEKRRISLGMK 1539
VDKEK I L +
Sbjct: 75 VDKEKGYIDLSKR 87
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Length = 175 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 3e-13
Identities = 25/166 (15%), Positives = 58/166 (34%), Gaps = 13/166 (7%)
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRK--LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
+ IV V+ + G ++ L ++ +LLS LS + S +K +GK VL
Sbjct: 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLR 74
Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1495
V+ ++++ + R +S+ I V ++ + I +E
Sbjct: 75 VDKEKGYIDLSKR----RVSSEDIIKCEEKYQKSKTVHSILRYC-AEKFQIPLE-----E 124
Query: 1496 LCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540
L + ++ + ++ + + +K+
Sbjct: 125 LYKTIAWPLSRKFGHAYEAFKLSIIDETVWEGIEPPSKDVLDELKN 170
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Length = 175 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 20/163 (12%), Positives = 50/163 (30%), Gaps = 11/163 (6%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +V V + GA V+ ++ + L +S I K +VG V VL
Sbjct: 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVL 73
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
V + I ++ ++ + + Y ++ + I ++ + +
Sbjct: 74 RVDKEKGYIDLSKRRVSSEDIIKCEEKYQKSKT-------VHSILRYCAEKFQIPLEELY 126
Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
+ + + + + P S+ +
Sbjct: 127 KTIAWPLSRKFGHAYEAFKLSIIDETVWEGIEPPSKDVLDELK 169
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Length = 175 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 32/189 (16%)
Query: 761 PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
+ +V V I E G +V+ L + G S+ + + K VG++ + +L
Sbjct: 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLR 74
Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE--GFIIGS 876
V+ E G I LS ++ + E+ I + + + + +
Sbjct: 75 VDKEKGYIDLSKRR----------VSS----EDIIKCEEKYQKSKTVHSILRYCAEKFQI 120
Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
+E + Y + + + + + V
Sbjct: 121 PLEELYKTIAW----PLSRKFGHAYEA----------FKLSIIDETVWEGIEPPSKDVLD 166
Query: 937 SLKTVFIDR 945
LK R
Sbjct: 167 ELKNYISKR 175
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Length = 175 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 26/159 (16%)
Query: 874 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILD 926
I ++ V + + G V E+ ++ G I +L+ + G A +L
Sbjct: 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLR 74
Query: 927 VAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYL 986
V K + +DLS + V + + + +TV++I+ E
Sbjct: 75 VDKEKGYIDLSKRRV---------------SSEDIIKCEEKYQKSKTVHSILRYCAEK-F 118
Query: 987 VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATV 1025
+ L E +I + + + F
Sbjct: 119 QIPLEELYKTIAWPLSRKFGH---AYEAFKLSIIDETVW 154
|
| >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 5e-17
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKV 1522
G + G++ + YG F+ IE + GL HVSE+ + + + G+ V+V
Sbjct: 26 KRYPEGTKLTGRVTNLTDYGCFVEIEE-GVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEV 84
Query: 1523 KILKVDKEKRRISLGMK 1539
+L +D+E+RRISLG+K
Sbjct: 85 MVLDIDEERRRISLGLK 101
|
| >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 5e-06
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF----EIVKPGKKFKVGAELVFR 552
G + G+V + +G V+ GV+ L H+SE + + P K VG +
Sbjct: 29 PEGTKLTGRVTNLTDYGCFVEIEEGVEGLV---HVSEMDWTNKNIHPSKVVNVGDVVEVM 85
Query: 553 VLGV--KSKRITVTHKKTL 569
VL + + +RI++ K+
Sbjct: 86 VLDIDEERRRISLGLKQCK 104
|
| >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
G +T + +GCFV GV+G SE+ + PS + +VG VV+ ++ RR
Sbjct: 36 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 95
Query: 650 INLS 653
I+L
Sbjct: 96 ISLG 99
|
| >2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 8e-17
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 1450 SDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1508
S S + + NL + I G++ V YG FI I GL H + +S VD
Sbjct: 3 SGSSGMNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVD 62
Query: 1509 NIETIYRAGEKVKVKILKVD--KEKRRISLGMK 1539
I G+KV VK++ + ++ ++SL MK
Sbjct: 63 KPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMK 95
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Length = 80 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-16
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1525
+ G G + R+E YG FI + + GL ++ ++N G+++ V+ +
Sbjct: 3 VEPGKFYKGVVTRIEKYGAFINLNE-QVRGLLRPRDMISLRLEN----LNVGDEIIVQAI 57
Query: 1526 KVDKEKRRISLGMK 1539
V EKR I
Sbjct: 58 DVRPEKREIDFKYI 71
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Length = 80 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
DV+PG KG V ++ +GA + V+ L M + + VG E++ + +
Sbjct: 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----ENLNVGDEIIVQAI 57
Query: 555 GV--KSKRITVTHK 566
V + + I +
Sbjct: 58 DVRPEKREIDFKYI 71
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Length = 80 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 7e-05
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
G +T+IEK+G F+ V+G ++ +VG + + + P
Sbjct: 8 FYKGVVTRIEKYGAFINLNEQVRGLLRPRDMIS----LRLENLNVGDEIIVQAIDVRPEK 63
Query: 648 RRINLSF 654
R I+ +
Sbjct: 64 REIDFKY 70
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Length = 80 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
+ P G V I + G F+ ++ G + + +L+ VG + +D
Sbjct: 3 VEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRLENLN----VGDEIIVQAID 58
Query: 819 VNSETGRITLSLKQ 832
V E I
Sbjct: 59 VRPEKREIDFKYIP 72
|
| >3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A Length = 275 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 1e-15
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1468 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
G+ V+ +KR+ +YG F+ + E H+SE++ V NI + G+KV K+++
Sbjct: 11 EGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIR 70
Query: 1527 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM 1586
VD K I L ++ + LQ + E + + + E + V
Sbjct: 71 VDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLRLAAEKLGKDFEAAWREVWVPLE 130
Query: 1587 E 1587
E
Sbjct: 131 E 131
|
| >3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A Length = 275 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ G V V + ++GA ++ G +A + ++ + K G ++V +V+
Sbjct: 10 EEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVI 69
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATD 585
V + I ++ ++ + + A L + A
Sbjct: 70 RVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQK 102
|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 Length = 308 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 2e-15
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1468 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
V D+V+ ++ ++ G ++++ E N+ G+ H+SELS + +I + R G VK+++
Sbjct: 13 VEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIR 72
Query: 1527 VDKEKRRISLGMK 1539
VDKEK I L +
Sbjct: 73 VDKEKGYIDLSKR 85
|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 Length = 308 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 6e-07
Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 11/174 (6%)
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRK--LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
+V V+++ G ++ L ++ + LS LS + S K IG+ +V+
Sbjct: 13 VEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIR 72
Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1495
V+ ++++ + R + + I V ++ V + E +
Sbjct: 73 VDKEKGYIDLSKR----RVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLF 128
Query: 1496 LCHVSELSEDHVDNIETIYRAGEK-----VKVKILKVDKEKRRISLGMKSSYFK 1544
+ + Y A + + L +++++R + + +
Sbjct: 129 QRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNINRRLT 182
|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 Length = 308 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 14/112 (12%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ VV V ++ GA V ++ + L +S I K ++G +V+
Sbjct: 12 EVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVI 71
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
V + I ++ ++ + + + ++ + + + + + +
Sbjct: 72 RVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKT---VYSILRHVAEVLEYTK 120
|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 6e-04
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 591 GWITKIEKHGCFVRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
+ I++ G +V YN ++G SEL + + +G+ +++
Sbjct: 19 VNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKG 78
Query: 649 RINLSFMMKPTRVSEDDL------VKLGSLVSGVVDVVTP 682
I+LS RVS ++ V ++ V
Sbjct: 79 YIDLSK----RRVSPEEAIKCEDKFTKSKTVYSILRHVAE 114
|
| >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* Length = 266 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 7e-15
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1468 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
G+I+I +K+V YG ++++ E L SE+S V NI + + KV VK+++
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
Query: 1527 VDKEKRRISLGMK 1539
VD+ K + + +K
Sbjct: 71 VDRRKGTVDVSLK 83
|
| >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* Length = 266 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
G ++ V V +G+ V GG++A P +S + K +++ +V+
Sbjct: 10 SEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVI 69
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
V + + V+ KK + + + + + +
Sbjct: 70 RVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQR---LDKILELVSQK 113
|
| >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* Length = 266 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 7/159 (4%)
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
I+ VK V G ++ L L A + S +S +V++ + V +V+
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1495
V+ V+V+LK + + +I + S L ++ ++
Sbjct: 71 VDRRKGTVDVSLK----KVTDDERRKKNLQWKKIQRL-DKILELVSQKLKLSEKDAWEQV 125
Query: 1496 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1534
+ D + IE + GEK+ + + + +
Sbjct: 126 AWKLEAKYGDPITAIEKAVKEGEKILIDAGVPEIWVKPL 164
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-13
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-FPIGKLV 1429
E + I+ V+ + +++ V + + P E + IGK
Sbjct: 898 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTY 957
Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQ 1457
+V+ ++ + EV+L D +
Sbjct: 958 PAKVIYIDYANITAEVSLLDHDVKQQYV 985
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 3e-11
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKI 1524
G I+ +++R + T + + + + + + IY G+ K+
Sbjct: 903 FFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKV 961
Query: 1525 LKVDKEKRRISLGMKSS 1541
+ +D + +
Sbjct: 962 IYIDYANITAEVSLLDH 978
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 4e-05
Identities = 8/79 (10%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK-FKVGAELV 550
+ G ++ +V I V+ + + ++ +P + +++G
Sbjct: 899 SEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYP 958
Query: 551 FRVLGV--KSKRITVTHKK 567
+V+ + + V+
Sbjct: 959 AKVIYIDYANITAEVSLLD 977
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-05
Identities = 8/77 (10%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNI 816
S++ V + + Q R ++ Y +G++ + +
Sbjct: 902 TFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKV 961
Query: 817 LDVNSETGRITLSLKQS 833
+ ++ +SL
Sbjct: 962 IYIDYANITAEVSLLDH 978
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-04
Identities = 6/69 (8%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS-MYHVGQVVKCRIMSSIPASRR 649
+ + + + V+ P++ +Y +G+ +++ A+
Sbjct: 911 VRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANIT 970
Query: 650 INLSFMMKP 658
+S +
Sbjct: 971 AEVS--LLD 977
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 1/106 (0%)
Query: 311 LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
L G S G ++ RV+ N ++ + + V+ Y
Sbjct: 895 LTGESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIG 954
Query: 371 KKVNARILFVDPTSRAVGLTLNPY-LLHNRAPPSHVKVGDIYDQSK 415
K A+++++D + ++L + + P S+ K I+D +
Sbjct: 955 KTYPAKVIYIDYANITAEVSLLDHDVKQQYVPISYSKDPSIWDLKQ 1000
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-13
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-FPIGKLV 1429
E + I+ V+ + +++ V + + P E + IGK
Sbjct: 895 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTY 954
Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQ 1457
+V+ ++ + EV+L D +
Sbjct: 955 PAKVIYIDYANITAEVSLLDHDVKQQYV 982
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 3e-11
Identities = 12/100 (12%), Positives = 33/100 (33%), Gaps = 2/100 (2%)
Query: 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-IETIYRAGEKVKVKI 1524
G I+ +++R + T + + + + + + IY G+ K+
Sbjct: 900 FFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKV 958
Query: 1525 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEE 1564
+ +D + + K + S + + +E
Sbjct: 959 IYIDYANITAEVSLLDHDVKQQYVPISYSKDPSIWDLKQE 998
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-05
Identities = 10/85 (11%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK-FKVGAELV 550
+ G ++ +V I V+ + + ++ +P + +++G
Sbjct: 896 SEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYP 955
Query: 551 FRVLGV--KSKRITVTHKKTLVKSK 573
+V+ + + V+ VK +
Sbjct: 956 AKVIYIDYANITAEVSLLDHDVKQQ 980
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 7e-05
Identities = 7/76 (9%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSNIL 817
S++ V + + Q ++ Y +G++ + ++
Sbjct: 900 FFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVI 959
Query: 818 DVNSETGRITLSLKQS 833
++ +SL
Sbjct: 960 YIDYANITAEVSLLDH 975
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 7/72 (9%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS-MYHVGQVVKCRIMSSIPA 646
I + + + + V+ P++ +Y +G+ +++ A
Sbjct: 905 IIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYA 964
Query: 647 SRRINLSFMMKP 658
+ +S +
Sbjct: 965 NITAEVS--LLD 974
|
| >2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-13
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENT--NLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKI 1524
+GDI G++ + +G F+ +E GL H+SEL E V N+ + G++VKVK+
Sbjct: 12 IGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKV 71
Query: 1525 LKVDKEKRRISLGMK 1539
L + SL MK
Sbjct: 72 LSFT--GTKTSLSMK 84
|
| >2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 9e-05
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE----IVKPGKKFKVGAELV 550
+ G + GKV ++ FG VQ G K L H+SE + G +
Sbjct: 9 EPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVK 68
Query: 551 FRVLGVKSKRITVTHK 566
+VL + +++ K
Sbjct: 69 VKVLSFTGTKTSLSMK 84
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 4e-12
Identities = 97/712 (13%), Positives = 181/712 (25%), Gaps = 230/712 (32%)
Query: 366 DYNQHKKVNARILFV-------DPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ-SKVV 417
+ +H+ IL V + + V L S ++ I V
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-------SKEEIDHIIMSKDAVS 62
Query: 418 RVDRGLGLLLDIPSTPVST-------PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG- 469
R LL V Y + + E R+ + R R+
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 470 -----------FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK-VIAVD---SFGA 514
+ L +L+ V G++ GK +A+D S+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLID-----GVLGSGKTWVALDVCLSYKV 176
Query: 515 IVQFPGGV----KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLV 570
+ + C P +++ +K + + S I + +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPE----TVLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSI 230
Query: 571 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
+++L RL+ + Y L L +
Sbjct: 231 QAEL----------RRLLKS-------------KPY-------ENCLLVLLNVQNAKAWN 260
Query: 631 HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI 690
+ C+I+ + TR V D ++
Sbjct: 261 AFN--LSCKILLT---------------TR----F--------KQVTDFLSAATTTH--- 288
Query: 691 AKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ 750
I +H + L E +LL KY L Q
Sbjct: 289 --------ISLDHHSMTLTPD---------------------EVKSLL--LKY-LDCRPQ 316
Query: 751 QLPSDASHIHPNSVVHGYVCNIIETGCFVR-FLGRLTGF---------APRSKAVDGQRA 800
LP + +P +II +R L + +++
Sbjct: 317 DLPREVLTTNP------RRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 801 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF----LLEEK---- 852
+ + SV + T LSL +D + L+E++
Sbjct: 369 AEYRKMFDRLSVFPP--SAHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 853 ---IAMLQ-SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD--VYGFITH 906
I + K + I+ K +S+D + D Y I H
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP-----PYLDQYFYSHIGH 479
Query: 907 HQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID-RFREANSNRQAQKKKRKREAS 965
H L + + L + VF+D RF E K + +++
Sbjct: 480 H-----------------LKNIEHPERMTL-FRMVFLDFRFLEQ---------KIRHDST 512
Query: 966 KDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
+N + ++ + Y+ + P+Y V+ FL
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYE-----RLVNAI-------LDFL 552
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 2e-10
Identities = 100/676 (14%), Positives = 200/676 (29%), Gaps = 185/676 (27%)
Query: 941 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
VF D F + + Q + + ++ + + + + L +L +
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEE--IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 1060
V + + FL S I T PS T +R + +
Sbjct: 82 FVEEVLRINYK---FL--MSPIKTEQRQPSM--------------MTRMYIEQRDRLYN- 121
Query: 1061 YDVGSLVQAEITEIKP--------LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 1112
D + ++ ++P LELR + G + K+ V ++ ++K
Sbjct: 122 -DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-----GKTWVALDVCLSYK 175
Query: 1113 IGQTVTARI----IAKSNKPDMKKSFLWELS--IKPSMLTVSEIGSKLLFEECDVSIGQR 1166
+ + +I + N P+ L +L I P+ + S+ S
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN------------- 222
Query: 1167 VTGYVYKVDNEWALLTISRHLKAQ-----LFILDSAYEPSELQEFQRRFHI-----GKAV 1216
K+ + R LK++ L +L + F I K V
Sbjct: 223 -----IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGIS-DKTVDISNDNMQTFIHEGDIVGGRISKI----- 1270
T LS + L ++ D+ + + + R +
Sbjct: 278 T-DFLSAATTT---HISLDHHSMTLTPDEVKSL-------LL---KYLDCRPQDLPREVL 323
Query: 1271 ------LSGVGGLVVQIGPHL---YGRVHFTELKNI---CVSDPLSGYD-EGQFDPLSGY 1317
LS + ++ G + V+ +L I + + L + FD LS +
Sbjct: 324 TTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVF 381
Query: 1318 DEGQFVKCKVLEI-----SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE- 1371
+ +L + ++ +L S ++ ++ + P +LE
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI------PSIYLEL 435
Query: 1372 --KIEDLSP--NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-----------V 1416
K+E+ IV Y + + D+ L+ D Y +
Sbjct: 436 KVKLENEYALHRSIVDHY-----------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 1417 ESPEK--EFPIGKLVAGRVLSVEPLSKR-VEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1473
E PE+ F V L R +E ++ + + I N
Sbjct: 485 EHPERMTLFR-------MVF----LDFRFLEQKIRHDSTAWNASGSILNT---------- 523
Query: 1474 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR- 1532
+++++ Y +I +N L +D + + E L K
Sbjct: 524 --LQQLKFYKPYIC-DNDP-----KYERLVNAILDFLP---KIEEN-----LICSKYTDL 567
Query: 1533 -RISLGMKSSYFKNDA 1547
RI+L + +A
Sbjct: 568 LRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 4e-10
Identities = 105/686 (15%), Positives = 187/686 (27%), Gaps = 228/686 (33%)
Query: 21 KASKNQFKNSKKQINDAVEA--QDLALPPD-DDVPVFPRGGGHSLTQRERDEIHAEVDAE 77
+ ++Q++ K ++ +A + D DV P+ L++ E D I DA
Sbjct: 10 ETGEHQYQY-KDILSVFEDAFVDNF----DCKDVQDMPKS---ILSKEEIDHIIMSKDAV 61
Query: 78 ------F--------EAVER---GLHKKN--------KKKKKKTERKANETVDDLGSLFG 112
F E V++ + + N K ++++ ++ L+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 113 DG---ISGKLPRYANKITLKN-----------ISAGM----KLWGVVAEV-NEKDLVICL 153
D + R + L+ + G+ K W V +V + +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKM 180
Query: 154 PGG-----LRGLARAADALDPI------LDNEIEANEDNLLPTIFHVGQLVSCIVLQLDD 202
L+ L+ + +D + D+ I L++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-----------IKLRIHS 229
Query: 203 DKKEIGKRKIWLSLRL--SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF 260
+ E+ R++ S LL L VQ A F L
Sbjct: 230 IQAEL--RRLLKSKPYENCLLV----LLNVQNAKAWNA-------------FNLSCKILL 270
Query: 261 LPRNNLAENSGIDVKPGLLLQGVVRSID-RTRKVVYLSSDPDTVSKCVTKDL--K--GIS 315
R + V + T + L T++ K L K
Sbjct: 271 TTRF----------------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 316 IDLLVPGMMVST--RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT--NWKNDYNQHK 371
L P +++T R SI+ + T NWK+ N K
Sbjct: 315 PQDL-PREVLTTNPRRLSII--AESIR----------------DGLATWDNWKH-VNCDK 354
Query: 372 KVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS 431
++ L P +D+ V IP+
Sbjct: 355 LTTIIESSLN--------VLEPAEYRKM-----------FDRLSVFPPS------AHIPT 389
Query: 432 TPVST----PAYVTISDVAEEEVRK--LEKKYKEGSCVRVRILGFRHLEGLATGILKASA 485
+S + V + + +EK+ KE + I +LE LK
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES---TISIPS-IYLE------LKVKL 439
Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP-----------HMSEF 534
E H + I VD + F L P H+
Sbjct: 440 -ENEYALH-----------RSI-VDHYNIPKTFDS--DDLIPPYLDQYFYSHIGHHLKNI 484
Query: 535 EIVKPGKKFKVGAELV--FRVLGVKSKRI-TVTHKKTLVKSKLAILSSYAEATDRLITHG 591
E ++ + + FR L K + T + + + L L Y
Sbjct: 485 E---HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--------- 532
Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSE 617
+I + R N + F P+ E
Sbjct: 533 YICD--NDPKYERLVNAILDFLPKIE 556
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 2e-08
Identities = 95/682 (13%), Positives = 200/682 (29%), Gaps = 194/682 (28%)
Query: 1312 DPLSGYDEGQFVK---CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL--STDVDTP 1366
D LS +++ FV CK V+ +S L S + S D +
Sbjct: 20 DILSVFED-AFVDNFDCK------------DVQDMPKSIL---SKEEIDHIIMSKDAVSG 63
Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
L +VQ +V+ V + K L+S + E +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRI----------NYKFLMSPIKT---EQRQPSMMTR 110
Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN-LSNLHVGDIVI-------G---- 1474
+ R + L +V K + SR ++ L L V+ G
Sbjct: 111 MYIEQR----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 1475 --------QIKRVESYGLF-ITIENTN--------LVGLCHVSELSEDHVDNIETIYRAG 1517
+++ + +F + ++N N L L + ++ + +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY--QIDPNWTSRSDHSSN-- 222
Query: 1518 EKVKVKILKVDKEKRRISLGMKSSYFKND---ADNLQMSSEEESDEAIEE--------VG 1566
+K++I + E RR+ +KS ++N N+Q + +A +
Sbjct: 223 --IKLRIHSIQAELRRL---LKSKPYENCLLVLLNVQ------NAKAWNAFNLSCKILLT 271
Query: 1567 SYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESR---ASVPPLEVNLDDEQPDMDNG- 1622
+ + S+ + ++ L E + L+ D ++
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKY--LDCRPQDLPREVLTTN 326
Query: 1623 ---ISQNQGHTDEAKTIDEKNNR--HAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFER 1677
+S A++I + + K ++ I ++ L P E+ +
Sbjct: 327 PRRLSI------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-------EPAEYRK 373
Query: 1678 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1737
+ + + I L I W F++
Sbjct: 374 M-------------FDRLSVFPPSAH----IPTILLSLI-----------W---FDVIKS 402
Query: 1738 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY-----ERTEQNKLADELL--YKMIKKF 1790
V K+ + +L PK+ +++ +Y + + L ++ Y + K F
Sbjct: 403 ---DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 1791 KHS--CKVWLRR------VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1842
+L + L + + + L +F+ Q +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF------RFLEQKIR---HD 510
Query: 1843 GVADRGRSMFEGILSE---Y--------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891
A L + Y PK L + LD ++ + +LI + +
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE-NLICSKYTDLLR 569
Query: 1892 LSLPPKKMKFLFKKYLEYEKSV 1913
++L + + E K V
Sbjct: 570 IALMAEDEAI----FEEAHKQV 587
|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Length = 785 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-10
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITI---ENTNLVGLCHVSELSEDHVDNIETI 1513
Q + +L +L G ++ G + V ++G F+ I ++ GL H+S LSE V + +
Sbjct: 643 QEGVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQD----GLVHISALSEKFVKDPYEV 698
Query: 1514 YRAGEKVKVKILKVDKEKRRISLGMKSS 1541
+AG+ VKVK+++VD + R+ L M+ S
Sbjct: 699 VKAGDIVKVKVMEVDIPRNRVGLSMRMS 726
|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Length = 785 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
E ++DL P M+++G V NVT+ G F+ + D V +S LS+ +V+ P + G +V
Sbjct: 647 ESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVK 706
Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSE 1459
+V+ V+ RV ++++ SD+
Sbjct: 707 VKVMEVDIPRNRVGLSMRMSDTPGEKVEG 735
|
| >3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Length = 723 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 1e-10
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 1442 RVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITI----ENTNLVGL 1496
V++ + + I ++ + VG + G++ R+ +G F+ I E GL
Sbjct: 600 TVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE-----GL 654
Query: 1497 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539
H+S++++ V+ + + G++V VK+L+VD+ + RI L +K
Sbjct: 655 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIK 696
|
| >4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Length = 726 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 2e-10
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 1442 RVEVTLKTSDSRTASQSEINNL-SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1500
V+V+ A+ I ++ VG I G++ +V +G F+ GL HVS
Sbjct: 610 VVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFG-AKDGLVHVS 668
Query: 1501 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539
++S + V + + G+ VKVK+L D + + L MK
Sbjct: 669 QISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMK 706
|
| >1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Length = 757 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 4e-09
Identities = 26/134 (19%), Positives = 66/134 (49%), Gaps = 25/134 (18%)
Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLH---VGDIVIGQIKRVESYGLFITI----ENTNLV 1494
+ + + A+++ IN ++N VG+ ++G + + ++G F+++ +
Sbjct: 638 TIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLPGKD----- 692
Query: 1495 GLCHVSELSED----HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1550
GL H+S++ + V+N+E + G+KV+V+I ++D + ++SL
Sbjct: 693 GLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEID-SRGKLSLIPV--------IEG 743
Query: 1551 QMSSEEESDEAIEE 1564
+ ++ +E + E+
Sbjct: 744 EEAASDEKKDDAEQ 757
|
| >3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} Length = 285 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 7e-08
Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 17/121 (14%)
Query: 1441 KRVEVTLKTSDSR-----TASQSEINNLSN----LHVGDIVIGQIKRVESYGLFITIENT 1491
++ + L+ A Q + L+ + R++ G F+ +
Sbjct: 116 DQLYIRLEVDKKDRIWGLLAYQEDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPEN 175
Query: 1492 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1551
N++G H SE + R G+ + +++ + R ++L +K F+ ++ Q
Sbjct: 176 NMLGFIHPSERYAE--------PRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLENDAQ 227
Query: 1552 M 1552
M
Sbjct: 228 M 228
|
| >3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} Length = 285 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 17/173 (9%)
Query: 496 VKPGMVVKGKVIAVD-SFGAIVQFPGGVK-ALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
G+V V G V K + L + E + + P K G +L R+
Sbjct: 67 ATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKELWP----KKGDQLYIRL 122
Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG-VQGF 612
K RI +LA + + +++ G FV + GF
Sbjct: 123 EVDKKDRIWGLLAYQEDFQRLARPAYNNMQNQ--NWPAIVYRLKLSGTFVYLPENNMLGF 180
Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
SE + +GQV+ R++ R +NLS + + E+D
Sbjct: 181 IHPSER--------YAEPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLEND 225
|
| >3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} Length = 285 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 38/242 (15%), Positives = 70/242 (28%), Gaps = 41/242 (16%)
Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
I FV+ +G + E + VG VK +++ L
Sbjct: 14 IIDENDRFYFVQ-KDGQTYALAKEEGQ----------HTVGDTVKGFAY--TDMKQKLRL 60
Query: 653 SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL-EHA 711
+ + + + V +V V V +P + + L
Sbjct: 61 TTLEVTATQDQFGWGR-------VTEVRKDLGVFVDT--------GLPDKEIVVSLDILP 105
Query: 712 TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
+ + K G + L +D + L A +L A + N V
Sbjct: 106 ELKELWPKKGDQLYIRLEVDKKDRIWGLLAYQEDFQ---RLARPAYNNMQNQNWPAIVYR 162
Query: 772 IIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
+ +G FV + GF S + +GQ + + ++ + LSL
Sbjct: 163 LKLSGTFVYLPENNMLGFIHPS--------ERYAEPRLGQVLDARVIGFREVDRTLNLSL 214
Query: 831 KQ 832
K
Sbjct: 215 KP 216
|
| >4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E Length = 180 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 6e-07
Identities = 21/91 (23%), Positives = 49/91 (53%), Gaps = 17/91 (18%)
Query: 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYR 1515
V ++V G++ +V++YG+F+ + + GL H+S++++D + + + + +
Sbjct: 80 VVQEVVEGEVLQVDNYGVFVNLGP--MDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQ 137
Query: 1516 AGEKVKVKILKVDKEKR----RISLGMKSSY 1542
G+KV+ +++ V RI+L M+ Y
Sbjct: 138 KGDKVRARVISVASTVTGRLPRIALTMRQPY 168
|
| >2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Length = 644 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-06
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 14/82 (17%)
Query: 1467 HVGDIVI--GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD------------NIET 1512
G +I + G+ + + + + L + ET
Sbjct: 557 KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET 616
Query: 1513 IYRAGEKVKVKILKVDKEKRRI 1534
+Y+ + + V I +V E R I
Sbjct: 617 VYKVTDVIDVTIAEVRMETRSI 638
|
| >2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A Length = 469 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-05
Identities = 5/70 (7%), Positives = 16/70 (22%), Gaps = 13/70 (18%)
Query: 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
+ + + I + + G ++V+
Sbjct: 402 QPERVWDAVVVDRRGAQATLLIPDLAFDVQVNTPAA-------------PGTALQVQFAD 448
Query: 1527 VDKEKRRISL 1536
+D + R+
Sbjct: 449 IDLPQMRVRA 458
|
| >3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A Length = 179 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 1451 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI---------ENTNLVGLCHVSE 1501
R A I+ + + GD+V+G++ + + I + + +G+ HVS
Sbjct: 40 KDRVAKVESISPIPEIVKGDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSN 99
Query: 1502 LSEDHVDNIETIYRAGEKVKVKILKVD 1528
+ E +V I + +K +++ +
Sbjct: 100 VDEGYVKEISEAVGYLDILKARVIGDN 126
|
| >3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 172 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 14/93 (15%)
Query: 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----------DNIE 1511
L G++V + V G F I N + D +
Sbjct: 78 VLWRPFRGEVVDAIVTTVNKMGFFANIGPLN--VFVSSHLVPPDMKFDPTANPPNYSGED 135
Query: 1512 TIYRAGEKVKVKILKVDKEKRRIS--LGMKSSY 1542
+ G V++KI+ + I MK Y
Sbjct: 136 QVIEKGSNVRLKIVGTRTDATEIFAIATMKEDY 168
|
| >2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 977 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-04
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 20/86 (23%)
Query: 1474 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------------DNIETIYRA 1516
G + +V + G+ + + + GL + L+ED +
Sbjct: 892 GYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYV 951
Query: 1517 GEKVKVKILKVDKE---KRRISLGMK 1539
+KV+V++ V KR+ L +K
Sbjct: 952 FDKVEVQVRSVMDPITSKRKAELLLK 977
|
| >2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Length = 760 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 8e-04
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 20/86 (23%)
Query: 1474 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------------DNIETIYRA 1516
G + +V + G+ + + + GL + L+ED +
Sbjct: 675 GYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYV 734
Query: 1517 GEKVKVKILKVDKE---KRRISLGMK 1539
+KV+V++ V KR+ L +K
Sbjct: 735 FDKVEVQVRSVMDPITSKRKAELLLK 760
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1935 | |||
| 3go5_A | 285 | Multidomain protein with S1 RNA-binding domains; s | 99.96 | |
| 3go5_A | 285 | Multidomain protein with S1 RNA-binding domains; s | 99.95 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.88 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.85 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.79 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.75 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.7 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.7 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.69 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.69 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.68 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.68 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.67 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 1kl9_A | 182 | Eukaryotic translation initiation factor 2 subuni; | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.58 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.5 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.44 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.42 | |
| 1kl9_A | 182 | Eukaryotic translation initiation factor 2 subuni; | 99.41 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.39 | |
| 2khj_A | 109 | 30S ribosomal protein S1; OB fold, acetylation, ph | 99.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.38 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.37 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.37 | |
| 1luz_A | 88 | Protein K3, protein K2; stranded anti-parallel bet | 99.37 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.36 | |
| 2a19_A | 175 | EIF-2- alpha, eukaryotic translation initiation fa | 99.35 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.35 | |
| 2k52_A | 80 | Uncharacterized protein MJ1198; metal-binding, zin | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.33 | |
| 2a19_A | 175 | EIF-2- alpha, eukaryotic translation initiation fa | 99.33 | |
| 1q8k_A | 308 | Eukaryotic translation initiation factor 2 subunit | 99.32 | |
| 2khi_A | 115 | 30S ribosomal protein S1; acetylation, phosphoprot | 99.32 | |
| 2khj_A | 109 | 30S ribosomal protein S1; OB fold, acetylation, ph | 99.32 | |
| 2k4k_A | 130 | GSP13, general stress protein 13; cytoplasm, stres | 99.32 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 1wi5_A | 119 | RRP5 protein homolog; S1 domain, OB-fold, structur | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 2khi_A | 115 | 30S ribosomal protein S1; acetylation, phosphoprot | 99.28 | |
| 2cqo_A | 119 | Nucleolar protein of 40 kDa; S1 domain, OB-fold, s | 99.26 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.24 | |
| 2eqs_A | 103 | ATP-dependent RNA helicase DHX8; S1 domain, OB-fol | 99.24 | |
| 1luz_A | 88 | Protein K3, protein K2; stranded anti-parallel bet | 99.23 | |
| 2k4k_A | 130 | GSP13, general stress protein 13; cytoplasm, stres | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 2k52_A | 80 | Uncharacterized protein MJ1198; metal-binding, zin | 99.2 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.19 | |
| 3aev_A | 275 | Translation initiation factor 2 subunit alpha; pro | 99.18 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.18 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.18 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 2cqo_A | 119 | Nucleolar protein of 40 kDa; S1 domain, OB-fold, s | 99.17 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.16 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 1q8k_A | 308 | Eukaryotic translation initiation factor 2 subunit | 99.16 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.15 | |
| 2eqs_A | 103 | ATP-dependent RNA helicase DHX8; S1 domain, OB-fol | 99.15 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.14 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.14 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.13 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.13 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.11 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.11 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.11 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.09 | |
| 1wi5_A | 119 | RRP5 protein homolog; S1 domain, OB-fold, structur | 99.09 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.07 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.06 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.05 | |
| 3aev_A | 275 | Translation initiation factor 2 subunit alpha; pro | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.05 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.04 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.04 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.03 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.02 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.96 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.95 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.95 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.94 | |
| 3cw2_C | 266 | Translation initiation factor 2 subunit alpha; AIF | 98.92 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.9 | |
| 1e3p_A | 757 | Guanosine pentaphosphate synthetase; polyribonucle | 98.9 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.9 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.89 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.88 | |
| 3psi_A | 1219 | Transcription elongation factor SPT6; nucleus; 3.3 | 98.87 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.86 | |
| 3cdi_A | 723 | Polynucleotide phosphorylase; mRNA turnover, RNAse | 98.84 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.82 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.82 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.82 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.81 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.8 | |
| 3bzc_A | 785 | TEX; helix-turn-helix, helix-hairpin-helix, S1 dom | 98.8 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.79 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.79 | |
| 1go3_E | 187 | DNA-directed RNA polymerase subunit E; transferase | 98.78 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.78 | |
| 3cw2_C | 266 | Translation initiation factor 2 subunit alpha; AIF | 98.77 | |
| 3psf_A | 1030 | Transcription elongation factor SPT6; nucleus; 2.5 | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.75 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.75 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.75 | |
| 3psi_A | 1219 | Transcription elongation factor SPT6; nucleus; 3.3 | 98.75 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.74 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.73 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.73 | |
| 4aid_A | 726 | Polyribonucleotide nucleotidyltransferase; transfe | 98.73 | |
| 2nn6_I | 209 | 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, | 98.71 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.71 | |
| 4ayb_E | 180 | DNA-directed RNA polymerase; transferase, multi-su | 98.7 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.7 | |
| 3bzc_A | 785 | TEX; helix-turn-helix, helix-hairpin-helix, S1 dom | 98.7 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.69 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.69 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.68 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.68 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.64 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.64 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.63 | |
| 1e3p_A | 757 | Guanosine pentaphosphate synthetase; polyribonucle | 98.63 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.62 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.62 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.6 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.6 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.58 | |
| 3m7n_A | 179 | Putative uncharacterized protein AF_0206; exosome, | 98.58 | |
| 3psf_A | 1030 | Transcription elongation factor SPT6; nucleus; 2.5 | 98.58 | |
| 2bh8_A | 101 | 1B11; transcription, molecular evolution, unique a | 98.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.57 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.57 | |
| 1y14_B | 171 | B16, RPB7, DNA-directed RNA polymerase II 19 kDa p | 98.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.56 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.55 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.55 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.54 | |
| 1go3_E | 187 | DNA-directed RNA polymerase subunit E; transferase | 98.54 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.54 | |
| 2b8k_G | 215 | B16, DNA-directed RNA polymerase II 19 kDa polypep | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.53 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.52 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.51 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.51 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.51 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.51 | |
| 4aid_A | 726 | Polyribonucleotide nucleotidyltransferase; transfe | 98.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.5 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.49 | |
| 2c35_B | 172 | Human RPB7, DNA-directed RNA polymerase II 19 kDa | 98.49 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.49 | |
| 2nn6_I | 209 | 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, | 98.47 | |
| 2z0s_A | 235 | Probable exosome complex RNA-binding protein 1; al | 98.47 | |
| 3cdi_A | 723 | Polynucleotide phosphorylase; mRNA turnover, RNAse | 98.45 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.44 | |
| 4ayb_E | 180 | DNA-directed RNA polymerase; transferase, multi-su | 98.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.39 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.38 | |
| 2je6_I | 251 | RRP4, exosome complex RNA-binding protein 1; nucle | 98.36 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.36 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.35 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.35 | |
| 2b8k_G | 215 | B16, DNA-directed RNA polymerase II 19 kDa polypep | 98.35 | |
| 3h0g_G | 172 | DNA-directed RNA polymerase II subunit RPB7; trans | 98.35 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.34 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.34 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.34 | |
| 3m7n_A | 179 | Putative uncharacterized protein AF_0206; exosome, | 98.34 | |
| 1y14_B | 171 | B16, RPB7, DNA-directed RNA polymerase II 19 kDa p | 98.34 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.33 | |
| 2z0s_A | 235 | Probable exosome complex RNA-binding protein 1; al | 98.33 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.29 | |
| 2ba0_A | 229 | Archeal exosome RNA binding protein RRP4; RNAse PH | 98.29 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.25 | |
| 2c35_B | 172 | Human RPB7, DNA-directed RNA polymerase II 19 kDa | 98.25 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.22 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.2 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.19 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.18 | |
| 2je6_I | 251 | RRP4, exosome complex RNA-binding protein 1; nucle | 98.17 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.16 | |
| 1hh2_P | 344 | NUSA, N utilization substance protein A; transcrip | 98.15 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.12 | |
| 2ba0_A | 229 | Archeal exosome RNA binding protein RRP4; RNAse PH | 98.12 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.1 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.09 | |
| 1hh2_P | 344 | NUSA, N utilization substance protein A; transcrip | 98.08 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 3h0g_G | 172 | DNA-directed RNA polymerase II subunit RPB7; trans | 98.04 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.97 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.95 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.9 | |
| 2bh8_A | 101 | 1B11; transcription, molecular evolution, unique a | 97.9 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.88 | |
| 2id0_A | 644 | Exoribonuclease 2; RNAse, exonuclease, hydrolyase, | 97.8 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.76 | |
| 3ayh_B | 203 | DNA-directed RNA polymerase III subunit RPC8; tran | 97.7 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.69 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.65 | |
| 2ckz_B | 218 | C25, DNA-directed RNA polymerase III 25 KD polypep | 97.54 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.51 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.46 | |
| 2id0_A | 644 | Exoribonuclease 2; RNAse, exonuclease, hydrolyase, | 97.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.42 | |
| 2nn6_H | 308 | Exosome complex exonuclease RRP4; RNA, exosome, PM | 97.41 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.41 | |
| 2vnu_D | 760 | Exosome complex exonuclease RRP44; hydrolase-RNA c | 97.37 | |
| 2bx2_L | 517 | Ribonuclease E, RNAse E; RNA-binding, RNA turnover | 97.37 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.35 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.34 | |
| 2wp8_J | 977 | Exosome complex exonuclease DIS3; nucleus, hydrola | 97.32 | |
| 2nn6_H | 308 | Exosome complex exonuclease RRP4; RNA, exosome, PM | 97.32 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.31 | |
| 3ayh_B | 203 | DNA-directed RNA polymerase III subunit RPC8; tran | 97.31 | |
| 2bx2_L | 517 | Ribonuclease E, RNAse E; RNA-binding, RNA turnover | 97.22 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.2 | |
| 1k0r_A | 366 | NUSA; two component arrangement, S1 domain, two K- | 97.2 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.2 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.14 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.12 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 97.1 | |
| 2ckz_B | 218 | C25, DNA-directed RNA polymerase III 25 KD polypep | 97.08 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.06 | |
| 2asb_A | 251 | Transcription elongation protein NUSA; protein-RNA | 97.02 | |
| 1k0r_A | 366 | NUSA; two component arrangement, S1 domain, two K- | 96.98 | |
| 2ja9_A | 175 | Exosome complex exonuclease RRP40; RNA-binding pro | 96.97 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 96.96 | |
| 2ja9_A | 175 | Exosome complex exonuclease RRP40; RNA-binding pro | 96.95 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 96.95 | |
| 2asb_A | 251 | Transcription elongation protein NUSA; protein-RNA | 96.94 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.92 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.82 | |
| 2wp8_J | 977 | Exosome complex exonuclease DIS3; nucleus, hydrola | 96.78 | |
| 2vnu_D | 760 | Exosome complex exonuclease RRP44; hydrolase-RNA c | 96.78 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 96.55 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 96.48 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 96.47 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.4 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 96.36 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 96.03 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.9 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.81 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.6 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.32 | |
| 2nn6_G | 289 | Exosome complex exonuclease RRP40; RNA, exosome, P | 94.94 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.76 | |
| 2nn6_G | 289 | Exosome complex exonuclease RRP40; RNA, exosome, P | 94.68 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.62 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.19 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.18 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.59 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.77 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 91.45 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.16 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 88.48 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.44 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.24 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 88.06 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.9 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 87.12 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.06 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.64 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.38 | |
| 2r7d_A | 469 | Ribonuclease II family protein; structural genomic | 83.38 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.39 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.3 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.51 |
| >3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-28 Score=280.62 Aligned_cols=210 Identities=20% Similarity=0.132 Sum_probs=181.6
Q ss_pred CCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCce
Q 000173 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338 (1935)
Q Consensus 1259 ~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~ 1338 (1935)
+|++++|+|++++++ |+||+++ +.+|++|.+|+ |. ++|+.|+|+|+. |. .+
T Consensus 6 ~G~~v~g~V~~~~~~--G~fv~~~-g~egllp~se~------------------~~---~vGdevev~v~~-d~----~~ 56 (285)
T 3go5_A 6 LASFIVGLIIDENDR--FYFVQKD-GQTYALAKEEG------------------QH---TVGDTVKGFAYT-DM----KQ 56 (285)
T ss_dssp TTEEEEEEEEEECSS--EEEEEET-TEEEEEEGGGC------------------CC---CTTSEEEEEEEE-CT----TS
T ss_pred CCCEEEEEEEEEECC--EEEEEcC-CeEEEEEHHHC------------------cc---ccCCEEEEEEEE-CC----CC
Confidence 899999999999999 9999997 89999999998 33 699999999984 54 34
Q ss_pred EEEEeecccccCCCCCCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEe-eceEEEEeCC-CcEEEEECccCCCccc
Q 000173 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSR-KLDAKVLLSNLSDGYV 1416 (1935)
Q Consensus 1339 ~i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~-~~G~fV~l~~-~v~g~V~~s~lsd~~~ 1416 (1935)
++.+|++.+. +++|+++.|+|++++ ++|+||++|. +++||||+++++|...
T Consensus 57 r~iat~~~p~---------------------------~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~ 109 (285)
T 3go5_A 57 KLRLTTLEVT---------------------------ATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKE 109 (285)
T ss_dssp CEEEECSCCC---------------------------SCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGG
T ss_pred CEEEeccccc---------------------------ccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcccc
Confidence 6777754332 679999999999999 7999999997 7999999999998643
Q ss_pred CCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC-cccccccccccccCCCCCCcEEEeEEEEEeeceEEE-EEecCcee
Q 000173 1417 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI-TIENTNLV 1494 (1935)
Q Consensus 1417 ~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~-~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV-~l~~~~v~ 1494 (1935)
..+++||.|.++ +.+|+ ++||.+|+|+. ..++|. .....+++|++|+|+|+++++||+|| .+++ ++.
T Consensus 110 ----~~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~----~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~-g~~ 178 (285)
T 3go5_A 110 ----LWPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLA----RPAYNNMQNQNWPAIVYRLKLSGTFVYLPEN-NML 178 (285)
T ss_dssp ----GSCCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHC----CCCCSCCTTCEEEEEEEEEETTEEEEEETTT-TEE
T ss_pred ----cccCCCCEEEEE-EEECC-CCcEEEEehhhhhcchhh----hhhhhCCCCCEEEEEEEEEeCCcEEEEEeCC-CeE
Confidence 246899999765 79998 79999999875 344553 23678999999999999999999999 9976 899
Q ss_pred EEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1495 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1495 Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
||||+||+++ .+++||.|+|+|++||++++||+||+|+..+
T Consensus 179 Glih~SEl~~--------~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~ 219 (285)
T 3go5_A 179 GFIHPSERYA--------EPRLGQVLDARVIGFREVDRTLNLSLKPRSF 219 (285)
T ss_dssp EEECGGGCSS--------CCCTTCEEEEEEEEEETTTTEEEEECSCCCC
T ss_pred EEEEHHHccc--------cCCCCCEEEEEEEEEECCCCeEEEEeChhhh
Confidence 9999999984 4899999999999999989999999999765
|
| >3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-27 Score=271.85 Aligned_cols=226 Identities=18% Similarity=0.114 Sum_probs=195.2
Q ss_pred CCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCCCCCcc
Q 000173 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663 (1935)
Q Consensus 584 ~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~~~~~~ 663 (1935)
.+|+++.|+|+++.++|+||++ ++++||+|.+++. . ++||.|+|.|+ .|.+ +|+.+|.+.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~-~g~egllp~se~~-------~---~vGdevev~v~-~d~~-~r~iat~~~------- 64 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQK-DGQTYALAKEEGQ-------H---TVGDTVKGFAY-TDMK-QKLRLTTLE------- 64 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEE-TTEEEEEEGGGCC-------C---CTTSEEEEEEE-ECTT-SCEEEECSC-------
T ss_pred cCCCEEEEEEEEEECCEEEEEc-CCeEEEEEHHHCc-------c---ccCCEEEEEEE-ECCC-CCEEEeccc-------
Confidence 4799999999999999999999 5999999999994 1 79999999998 4654 566677543
Q ss_pred ccccCCCCeEEEEEEEEe-cCcEEEEEEecC-ceeEEEeccccCCcccccccccccccCCCeEeeEEEeecCCCeEEEec
Q 000173 664 DDLVKLGSLVSGVVDVVT-PNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741 (1935)
Q Consensus 664 ~~~~~~G~iv~g~V~~v~-~~g~~V~l~~~~-~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~~vl~~d~~~~~i~ls~ 741 (1935)
+.+++|+++.|+|++++ ++|+||.+ +. +++|+||.+++++... .++++||++...|.+|+ ++|+.+|+
T Consensus 65 -p~~~~G~~~~g~V~~v~~~~GaFVdi--G~~~~d~lvp~sel~~~~~------~~~~~Gd~v~v~l~iD~-~~Ri~ls~ 134 (285)
T 3go5_A 65 -VTATQDQFGWGRVTEVRKDLGVFVDT--GLPDKEIVVSLDILPELKE------LWPKKGDQLYIRLEVDK-KDRIWGLL 134 (285)
T ss_dssp -CCSCSSSCEEEEEEEEETTTEEEEEC--SCTTCCEEEEGGGSCSSGG------GSCCTTCEEEEEEEECT-TSCEEEEE
T ss_pred -ccccCCCEEEEEEEEEccCceEEEEE--CCCCcEEEEEHHHCCcccc------cccCCCCEEEEEEEECC-CCcEEEEe
Confidence 46889999999999999 79999999 66 6999999999997432 26799999997788998 68999999
Q ss_pred cch-hcchhccCCccccccCCCCEEEEEEEEEecCeEEE-EECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEe
Q 000173 742 KYS-LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV-RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819 (1935)
Q Consensus 742 K~~-l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV-~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~v 819 (1935)
|+. ..++|... .+.+++|+.+.|+|++++++|+|| .+.+++.||+|+|++++ .+++||.|+|+|+++
T Consensus 135 k~~~~~~~~~~~---~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~--------~l~~Gd~v~~~V~~i 203 (285)
T 3go5_A 135 AYQEDFQRLARP---AYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA--------EPRLGQVLDARVIGF 203 (285)
T ss_dssp CCHHHHHHHCCC---CCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS--------CCCTTCEEEEEEEEE
T ss_pred hhhhhcchhhhh---hhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc--------cCCCCCEEEEEEEEE
Confidence 986 56777643 456889999999999999999999 99999999999999974 489999999999999
Q ss_pred eCCCCeEEEeecccccCC--CCchhhHHHHHHH
Q 000173 820 NSETGRITLSLKQSCCSS--TDASFMQEHFLLE 850 (1935)
Q Consensus 820 d~e~~rl~LSlk~~~~~~--~d~~~i~~~l~~~ 850 (1935)
|++++||.||+|+..... .|++.|.+||.+.
T Consensus 204 d~~d~kI~LSlk~~~~~~~~~~a~~il~~L~~~ 236 (285)
T 3go5_A 204 REVDRTLNLSLKPRSFEMLENDAQMILTYLESN 236 (285)
T ss_dssp ETTTTEEEEECSCCCCCCCCHHHHHHHHHHHHT
T ss_pred ECCCCeEEEEeChhhhhccchHHHHHHHHHHhc
Confidence 999999999999986543 6678888888743
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=257.75 Aligned_cols=238 Identities=14% Similarity=0.229 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHhcC
Q 000173 1686 SFVWIKYMAFMLSMA-------DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV-KVFQRALQYC 1757 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~-------e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~-~vferAl~~~ 1757 (1935)
..+|.+|+.|+.+.+ ..++++.+|++||..+|... .+|+.|+.++...++ .+.|+ ++|+||+..+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~-----~lW~~ya~~~~~~~~--~~~a~r~il~rAi~~~ 374 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP-----EIWFNMANYQGEKNT--DSTVITKYLKLGQQCI 374 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH-----HHHHHHHHHHHHHSC--CTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHhcCc--HHHHHHHHHHHHHHhC
Confidence 489999999988754 24567789999999888644 599999999999994 47785 9999999999
Q ss_pred CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----------CC-----------CHHHHHHHHHHHHHc-CHHHHH
Q 000173 1758 DPK-KVHLALLGLYERTEQNKLADELLYKMIKKF-----------KH-----------SCKVWLRRVQRLLKQ-QQEGVQ 1813 (1935)
Q Consensus 1758 ~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~-----------~~-----------~~~vw~~~~~~l~~~-~~e~A~ 1813 (1935)
|.. .+|+.++.++++.+++++|+++|++++... |. ...+|+.|+.++.+. ..+.||
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 864 899999999999999999999999999863 32 356899999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1814 AVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1814 ~ll~ralk~~p~~~~~~~~~~~a~le~~~g-~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
.+|.+|++..|... ..+|..+|++|++.+ ++++||.+|+++++.+|++.++|..|++++...|+.++||.+|+||+..
T Consensus 455 ~vf~~A~~~~~~~~-~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 455 KIFGKCRRLKKLVT-PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHTGGGSC-THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCC-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999844332 489999999999876 5999999999999999999999999999999999999999999999983
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1893 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1893 ~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
..+++.++.+|..|++||.++|+.+.++.+++|+.+...
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 333456778999999999999999999999999988654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-21 Score=230.83 Aligned_cols=242 Identities=17% Similarity=0.265 Sum_probs=212.2
Q ss_pred CCCHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH-------cCCC-----C
Q 000173 1683 PNSSFVWIKYMAFMLSM----ADV----EKARSIAERALQTINIREENEKLNIWVAYFNLENE-------YGNP-----P 1742 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~----~e~----dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~-------~g~~-----~ 1742 (1935)
|.+..+|..|+.|+.+. .+. ++|+.+|++|+...|... .+|+.|+.++.. .|+. .
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~-----~~w~~~~~~~~~~~~~l~~~g~~~~~~~~ 79 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHhchhhhhccchhhcccc
Confidence 44568999999998875 344 789999999998766533 599999998764 4731 0
Q ss_pred HHHHHHHHHHHHh-cCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQ-YCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK-VWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1743 ~e~a~~vferAl~-~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~-vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
.+.|+.+|+||++ ..|.. .+|..++.++.+.|++++|+++|+++++..|.+.. +|+.|+.++.+. ++++|+.+|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2889999999999 56654 89999999999999999999999999999888876 999999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCc
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPP 1896 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~-~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~-~~~p 1896 (1935)
|++..|.. ..+|..++.+++. .|++++|+.+|+++++.+|.+.++|..|++++.+.|++++|+.+|++++.. .++|
T Consensus 160 a~~~~p~~--~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTCC--THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 99998876 4789999998875 699999999999999999999999999999999999999999999999994 2466
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1897 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1897 k~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
.....+|..|+.+|..+|+.+.+..++++|++...
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 54447999999999999999999999999998754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.85 E-value=6.2e-20 Score=236.29 Aligned_cols=252 Identities=18% Similarity=0.150 Sum_probs=207.5
Q ss_pred CCCcHHHHHHHHHc---CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhccccch---------hh--------
Q 000173 1668 APRTPDEFERLVRS---SPNSSFVWIKYMAFML----SMADVEKARSIAERALQTINIREE---------NE-------- 1723 (1935)
Q Consensus 1668 ~~~a~~~ferll~~---~P~s~~lW~~y~~~~l----~~~e~dkAr~v~erAl~~i~~~ee---------~E-------- 1723 (1935)
....+..|++++.. +|++..+|..|+.|+. .+++++.+|.+|+|||. +|.... .|
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~ 142 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITG 142 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccH
Confidence 34667899999864 7899999999999975 45689999999999996 554320 00
Q ss_pred ----------------------------HHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHhcCCC-HHHHHHHHHH
Q 000173 1724 ----------------------------KLNIWVAYFNLENEYGNPP-----EEAVVKVFQRALQYCDP-KKVHLALLGL 1769 (1935)
Q Consensus 1724 ----------------------------kl~lW~ayl~le~~~g~~~-----~e~a~~vferAl~~~~~-~~v~~~l~~i 1769 (1935)
...+|..|+.+|...+... .+.+..+|++|+..+|. ..+|+.|+.+
T Consensus 143 ~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 143 KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEY 222 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 0117888888876542101 24577899999998876 4999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHH----------------------------------------HHHHHHHHHHHc-C
Q 000173 1770 YERTEQNKLADELLYKMIKKFKHSCK----------------------------------------VWLRRVQRLLKQ-Q 1808 (1935)
Q Consensus 1770 ~~~~~~~~~A~el~~~~~k~~~~~~~----------------------------------------vw~~~~~~l~~~-~ 1808 (1935)
+.+.++.++|+++|++++.. |.+.. +|+.|+.++.++ .
T Consensus 223 ~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 99999999999999999988 76644 455555556667 8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g-~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
.+.||.+|++| ..|.. ...+|..+|++++..+ ++++||.+|+++++.+|++.++|..|++++++.|+.++||.+|+
T Consensus 302 ~~~AR~i~~~A--~~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 302 LELFRKLFIEL--GNEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHH--TTSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999 44543 3589999999999877 69999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1888 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1888 ral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
|+. +. ..+|..|++||..+|+.+.++.+++++++.+.
T Consensus 379 r~~------k~-~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 379 RLE------KT-SRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HSC------CB-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHH------HH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 972 22 37999999999999999999999999998775
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-19 Score=233.52 Aligned_cols=253 Identities=11% Similarity=0.141 Sum_probs=178.7
Q ss_pred CCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCC-CCHHHHH
Q 000173 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-PPEEAVV 1747 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~-~~~e~a~ 1747 (1935)
++.+..||+.|..+|.+...|+.|+.++.+.+.++.||.+|+||+...|... .+|+.|+.+|...++ ...+.++
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~-----~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA-----NIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHTC--CCCHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHhhCCcchHHHHH
Confidence 3444566667777777777777777777777777777777777776666533 467777777766662 0046777
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHHhc----CCCHHHHHHHHHHHHH------
Q 000173 1748 KVFQRALQYC---DPKKVHLALLGLYERTEQN--------KLADELLYKMIKKF----KHSCKVWLRRVQRLLK------ 1806 (1935)
Q Consensus 1748 ~vferAl~~~---~~~~v~~~l~~i~~~~~~~--------~~A~el~~~~~k~~----~~~~~vw~~~~~~l~~------ 1806 (1935)
.+|+||+..+ +.-.+|..|+.+..+.+.. +..+++|++++... +.+..+|..|+.|+..
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 7777777766 5556777777666554433 33446666666542 3356677777766542
Q ss_pred ---c-CHHHHHHHHHHHHHhCCCCCh------------------------------------------------------
Q 000173 1807 ---Q-QQEGVQAVVQRALLSLPRHKH------------------------------------------------------ 1828 (1935)
Q Consensus 1807 ---~-~~e~A~~ll~ralk~~p~~~~------------------------------------------------------ 1828 (1935)
+ +++.+|.+|+|+|. .|...+
T Consensus 204 ~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 2 55666666666663 343322
Q ss_pred -------------------HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1829 -------------------IKFISQTAILEFKNG-------VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1829 -------------------~~~~~~~a~le~~~g-------~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+.+|..|+.+|...+ ..++.+.+|+++|..+|...++|..|++++...|+.+.|
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHH
Confidence 356666666665543 245678899999999999999999999999999999999
Q ss_pred H-HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1883 R-GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1883 r-~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
+ .+|+||+. ..|+.. .+|..|+.+|+..|+.+.|+.+|++|++.+
T Consensus 363 ~r~il~rAi~--~~P~s~-~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 363 ITKYLKLGQQ--CIPNSA-VLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6 99999998 556666 699999999999999999999999999865
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.7e-19 Score=228.60 Aligned_cols=238 Identities=17% Similarity=0.264 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHcC----CH----HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH-------cCCCCHH------
Q 000173 1686 SFVWIKYMAFMLSMA----DV----EKARSIAERALQTINIREENEKLNIWVAYFNLENE-------YGNPPEE------ 1744 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~----e~----dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~-------~g~~~~e------ 1744 (1935)
..+|..|+.++.... +. .+|..+|++|+...|... .+|+.|+.++.. .|+. +
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~-----~~w~~~~~~~~~~~~~~~~~g~~--~~a~~~~ 302 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDM--NNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHTTTCC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhchhhhhccch--hhhhhhh
Confidence 479999999987642 33 478899999998877533 699999999876 6853 5
Q ss_pred -HHHHHHHHHHh-cCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc-CHHHHHHHHHHH
Q 000173 1745 -AVVKVFQRALQ-YCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-KVWLRRVQRLLKQ-QQEGVQAVVQRA 1819 (1935)
Q Consensus 1745 -~a~~vferAl~-~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~-~vw~~~~~~l~~~-~~e~A~~ll~ra 1819 (1935)
.|+.+|+||++ .+|. ..+|..++.++.+.|++++|+++|++++...|.+. .+|+.|+.++.+. ++++|+++|++|
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 89999999997 6665 59999999999999999999999999999988875 6999999999988 999999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCch
Q 000173 1820 LLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPPK 1897 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~-~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~-~~~pk 1897 (1935)
++..|.. ..+|...|.+++ ..|++++|+.+|+++++.+|++.++|..|++++.+.|+.++||.+|++++.. ..+|.
T Consensus 383 l~~~~~~--~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCTTCC--THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HhccCCc--hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 9988765 367777777765 5899999999999999999999999999999999999999999999999984 23555
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1898 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
.+..+|..|+.||..+|+.+.+..++.||++....
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 55579999999999999999999999999998864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=211.59 Aligned_cols=218 Identities=17% Similarity=0.242 Sum_probs=196.0
Q ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 000173 1670 RTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADV-------EKARSIAERALQTINIREENEKLNIWVAYFNLE 1735 (1935)
Q Consensus 1670 ~a~~~ferll~~~P~s~~lW~~y~~~~l~-------~~e~-------dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le 1735 (1935)
++...|++++..+|+++.+|+.|+.++.+ .|++ ++|+.+|+||++.+++.. ..+|+.|+.++
T Consensus 34 ~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~----~~~~~~~~~~~ 109 (308)
T 2ond_A 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----MLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc----HHHHHHHHHHH
Confidence 45679999999999999999999999874 5875 999999999997555433 46999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-H-HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-c-CHHH
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYCDPK-K-VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-Q-QQEG 1811 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~~~~-~-v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~-~-~~e~ 1811 (1935)
...| ..+.|+.+|++|++..|.. . +|..++.++.+.+++++|+.+|+++++..|....+|+.++.+... . ++++
T Consensus 110 ~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRM--KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTT--CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcC--CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999 5699999999999988764 4 999999999999999999999999999888899999988887765 4 9999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1812 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE---YP-KRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~---~P-k~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
|+.+|+++++.+|.. ..+|..++.++.+.|++++|+.+|++++.. .| +...+|..|+.++.+.|+.+.|+.+++
T Consensus 188 A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999976 699999999999999999999999999996 44 478899999999999999999999999
Q ss_pred HHHhcCCCch
Q 000173 1888 RAISLSLPPK 1897 (1935)
Q Consensus 1888 ral~~~~~pk 1897 (1935)
+++. ..|+
T Consensus 266 ~a~~--~~p~ 273 (308)
T 2ond_A 266 RRFT--AFRE 273 (308)
T ss_dssp HHHH--HTTT
T ss_pred HHHH--Hccc
Confidence 9998 5554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-18 Score=220.44 Aligned_cols=251 Identities=14% Similarity=0.261 Sum_probs=209.1
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HHcCCCCH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE-NEYGNPPE 1743 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le-~~~g~~~~ 1743 (1935)
.++..+++..|++++..+|++..+|+.|+.++.+.+++++|+.+|+||+...| + ..+|+.|+.+. ...++.
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~-----~~lw~~~~~~~~~~~~~~-- 96 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H-----IDLWKCYLSYVRETKGKL-- 96 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C-----HHHHHHHHHHHHHHTTTS--
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-----hHHHHHHHHHHHHHccch--
Confidence 45688899999999999999999999999999999999999999999998776 2 34899999765 455643
Q ss_pred HHH----HHHHHHHHhcCC----CHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHhcCCC--HHHHHHHHHH-
Q 000173 1744 EAV----VKVFQRALQYCD----PKKVHLALLGLYER---------TEQNKLADELLYKMIKKFKHS--CKVWLRRVQR- 1803 (1935)
Q Consensus 1744 e~a----~~vferAl~~~~----~~~v~~~l~~i~~~---------~~~~~~A~el~~~~~k~~~~~--~~vw~~~~~~- 1803 (1935)
+.| +.+|++|+...+ +..+|..++.++.+ .++++.|+.+|+++++ .|.. ..+|..|..+
T Consensus 97 ~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e 175 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYE 175 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHH
Confidence 444 459999998643 45999999999876 7899999999999997 3432 3455554443
Q ss_pred ----------------------------------------------------------------HHHc-----C----HH
Q 000173 1804 ----------------------------------------------------------------LLKQ-----Q----QE 1810 (1935)
Q Consensus 1804 ----------------------------------------------------------------l~~~-----~----~e 1810 (1935)
.... + ..
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~ 255 (530)
T 2ooe_A 176 EGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITK 255 (530)
T ss_dssp HHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHH
T ss_pred HhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHH
Confidence 2211 0 12
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 000173 1811 GVQAVVQRALLSLPRHKHIKFISQTAILEFK-------NGVAD-------RGRSMFEGILS-EYPKRTDLWSIYLDQEIR 1875 (1935)
Q Consensus 1811 ~A~~ll~ralk~~p~~~~~~~~~~~a~le~~-------~g~~e-------~Ar~ife~al~-~~Pk~~dlw~~ya~~e~k 1875 (1935)
+|..+|++|+..+|.+ +.+|..||.++.+ .|+++ +|+.+|+++++ .+|++..+|..|+.++.+
T Consensus 256 ~a~~~y~~al~~~p~~--~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHH--PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5667899999999877 6999999999986 79977 99999999997 799999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1876 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.|++++|+.+|++++. .+|.....+|..|+.++.+.|+.+.|+.+|++|++
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999999999999 77766436899999999999999999999999975
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-18 Score=220.51 Aligned_cols=251 Identities=15% Similarity=0.143 Sum_probs=202.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH----cCC
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD-VEKARSIAERALQTINIREENEKLNIWVAYFNLENE----YGN 1740 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e-~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~----~g~ 1740 (1935)
.+.+.++..|+|++...| +..+|..|+.|..+.++ .+..+.+|++|+.++.. +.....+|..|+.|+.. .+
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~--d~~s~~iW~~Yi~f~~~~~~~~~- 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN--YWDSYGLYKEYIEEEGKIEDEQT- 103 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT--CTTCHHHHHHHHHHTSSCSSHHH-
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--CcccHHHHHHHHHHHHhchhhhH-
Confidence 457778889999999888 89999999999988874 57789999999998753 22234799999999653 34
Q ss_pred CCHHHHHHHHHHHHhcCCC--HH------------------------------------------------HHHHHHHHH
Q 000173 1741 PPEEAVVKVFQRALQYCDP--KK------------------------------------------------VHLALLGLY 1770 (1935)
Q Consensus 1741 ~~~e~a~~vferAl~~~~~--~~------------------------------------------------v~~~l~~i~ 1770 (1935)
..+.++.+|+||++.... .. +|..|+.+.
T Consensus 104 -~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 104 -RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp -HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 358899999999984221 13 455555554
Q ss_pred HHcC--C-----hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh--------------
Q 000173 1771 ERTE--Q-----NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------- 1828 (1935)
Q Consensus 1771 ~~~~--~-----~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-------------- 1828 (1935)
.... - ...+..+|++++..+|..+.+|+.|+.++.++ ++++|+.+|+||+.. |....
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~ 261 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAV 261 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHH
Confidence 4321 1 34578899999999999999999999999998 999999999999999 87531
Q ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHH
Q 000173 1829 ------------------------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIR 1883 (1935)
Q Consensus 1829 ------------------------~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g-~~e~ar 1883 (1935)
..+|..|+.++.+.++.++||.+|+++ +..+...++|..++.+|...+ +.++||
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHH
Confidence 145777777777888999999999999 544457789999999999877 699999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1884 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1884 ~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rA 1926 (1935)
.+|++++. ..|+.. .+|..|++||...|+.+.++.+|+|+
T Consensus 341 ~ife~al~--~~~~~~-~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 341 NIFSSGLL--KHPDST-LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHH--HCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHH--HCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998 456666 58999999999999999999999996
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=198.34 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=221.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..++...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..+..++...| ..+
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~ 186 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-----AVAWSNLGCVFNAQG--EIW 186 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTTT--CHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--CHH
Confidence 3557888889999999999999999999999999999999999999999765531 357888888888888 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
.|...|++|++..|.. ..|..++.++...+++++|...|++++...|.+..+|..++..+... ++++|...|++++..
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999988874 88999999999999999999999999999999999999999999988 999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1902 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l 1902 (1935)
.|.. +.+|..+|.++.+.|++++|...|+++++..|.+.+.|..++.++.+.|++++|..+|++++. ..|... ..
T Consensus 267 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~ 341 (388)
T 1w3b_A 267 QPHF--PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFA-AA 341 (388)
T ss_dssp CSSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCH-HH
T ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcH-HH
Confidence 8876 588999999999999999999999999999999999999999999999999999999999988 667666 57
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1903 FKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1903 ~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
|..+.....+.|+.+.|...|++|++
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888889999999999999875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-16 Score=195.86 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=143.0
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..+..++...| ..++|.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~~A~ 155 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-----YCVRSDLGNLLKALG--RLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC-----THHHHHHHHHHHTTS--CHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcc--CHHHHH
Confidence 3444455555555555555555555555555555555555555555433311 234555555555555 335555
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
+.|+++++..|.. ..|..++.+|...|++++|.+.|++++...|.....|..++..+... ++++|...|++++...|.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 5555555555543 55555555666666666666666666655555566666666655555 666666666666666554
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
+ ..+|..+|..++..|++++|...|++++...|.+.++|..++..+.+.|++++|..+|++++. ..|... ..|..
T Consensus 236 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~ 310 (388)
T 1w3b_A 236 H--AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHA-DSLNN 310 (388)
T ss_dssp C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCH-HHHHH
T ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccH-HHHHH
Confidence 4 356666666666666666666666666666666666666666666666666666666666665 444444 35555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
+.......|+.+.|...+++|++
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555566666666666666654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.3e-17 Score=198.47 Aligned_cols=259 Identities=11% Similarity=-0.003 Sum_probs=224.4
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...|++++|+..|+++++..|.. ...|..++.++...| ..+
T Consensus 78 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~ 150 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN-----LKALMALAVSYTNTS--HQQ 150 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHccc--cHH
Confidence 3457778899999999999999999999999999999999999999999865532 468999999999999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHH----------HHHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-CHH
Q 000173 1745 AVVKVFQRALQYCDPK-KVH----------LALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQE 1810 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~----------~~l~~i~~~~~~~~~A~el~~~~~k~~~~--~~~vw~~~~~~l~~~-~~e 1810 (1935)
.|...|+++++..|.. ..| ..++.+|...+++++|.+.|++++...|. ...+|..++..+... +++
T Consensus 151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~ 230 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230 (365)
T ss_dssp HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999998764 333 34588999999999999999999999998 899999999999999 999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1811 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1811 ~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal 1890 (1935)
+|...|+++++..|.. ..+|..+|.++...|++++|...|+++++..|.+..+|..++.++...|++++|+..|++++
T Consensus 231 ~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 231 RAIDAFNAALTVRPED--YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999887 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchh-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000173 1891 SLSLPPKK-----------MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1934 (1935)
Q Consensus 1891 ~~~~~pk~-----------~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~ 1934 (1935)
. +.|+. ...+|..+.......|..+.+..+.+++++.++..+
T Consensus 309 ~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~ 361 (365)
T 4eqf_A 309 S--LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAF 361 (365)
T ss_dssp H--HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTT
T ss_pred H--hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhc
Confidence 8 33321 125788888888889999999999988877766554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-16 Score=189.61 Aligned_cols=251 Identities=11% Similarity=0.037 Sum_probs=169.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcC-CCCHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG-NPPEE 1744 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g-~~~~e 1744 (1935)
++..++...|++++..+|++...|..++..+...+++++|...++++++..|.. ..+|..+..+....| .+ +
T Consensus 36 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~--~ 108 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN-----PVSWFAVGCYYLMVGHKN--E 108 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-----THHHHHHHHHHHHSCSCH--H
T ss_pred CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHhhhhH--H
Confidence 445566667777777777777777777777777777777777777777654432 236666666666666 43 6
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
.|...|++|++..|.. ..|..++.+|...+++++|.+.|++++...+.....|..++..+... ++++|...|+++++.
T Consensus 109 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 109 HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6777777777766653 66777777777777777777777777777766667777777777766 777777777777777
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY---------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1893 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~---------Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~ 1893 (1935)
.|.. ..+|..+|.+++..|++++|...|++++... |....+|..++.++...|++++|...|++++.
T Consensus 189 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-- 264 (330)
T 3hym_B 189 APED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV-- 264 (330)
T ss_dssp CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred CCCC--hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 6655 4667777777777777777777777777665 44556677777777777777777777777776
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1894 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1894 ~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
..|... ..|..+.......|+.+.|...|++|++
T Consensus 265 ~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 265 LIPQNA-STYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HSTTCS-HHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred hCccch-HHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 444444 4566666666666777777777766654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-16 Score=191.81 Aligned_cols=258 Identities=12% Similarity=0.037 Sum_probs=231.3
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..++.++...| ..+
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~g--~~~ 149 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN-----QTALMALAVSFTNES--LQR 149 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcC--CHH
Confidence 3456788899999999999999999999999999999999999999999765532 468999999999999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHH----------------HHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHH
Q 000173 1745 AVVKVFQRALQYCDPK-KVHL----------------ALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLL 1805 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~----------------~l~~i~~~~~~~~~A~el~~~~~k~~~~--~~~vw~~~~~~l~ 1805 (1935)
.|...|+++++..|.. ..|. .++.++ ..+++++|.+.|+++++..|. ...+|..++..+.
T Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 9999999999998864 3332 344555 899999999999999999998 8999999999999
Q ss_pred Hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1806 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1884 (1935)
Q Consensus 1806 ~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~ 1884 (1935)
.. ++++|...|++++...|.. ..+|..+|.++...|++++|...|++++...|.+..+|..++.++.+.|++++|..
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99 9999999999999999877 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchh-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhC
Q 000173 1885 LFERAISLSLPPKK-----------MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1935 (1935)
Q Consensus 1885 lferal~~~~~pk~-----------~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~~ 1935 (1935)
.|++++. +.|.. . ..|..+.......|+.+.+..+++++++.....++
T Consensus 307 ~~~~al~--~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 307 HFLEALN--MQRKSRGPRGEGGAMSE-NIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HHHHHHH--HHHTC------CCCCCH-HHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHH--hCCCCCCccccccchhh-HHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence 9999998 44444 4 68999999999999999999999999998887653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-16 Score=186.81 Aligned_cols=258 Identities=9% Similarity=0.031 Sum_probs=228.1
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...+++++|...++++++..|.. ...|..++.++...| ..+
T Consensus 34 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~--~~~ 106 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-----IAVHAALAVSHTNEH--NAN 106 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-----HHHHHHHHHHHHHcC--CHH
Confidence 3456778889999999999999999999999999999999999999999865532 458889999999999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLAL--------------LG-LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1807 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l--------------~~-i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~- 1807 (1935)
.|...|+++++..|.. ..|..+ +. ++...+++++|.+.|+++++..+....+|..++..+...
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Confidence 9999999999998765 444444 44 577889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
++++|...|+++++..|.. ..+|..+|.+++..|++++|...|+++++..|.+..+|..++.++...|+++.|...|+
T Consensus 187 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 187 NYDSAAANLRRAVELRPDD--AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999877 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCch------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000173 1888 RAISLSLPPK------------KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1934 (1935)
Q Consensus 1888 ral~~~~~pk------------~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~ 1934 (1935)
+++. ..|. .. ..|..+.......|+.+.|..++++|++.....+
T Consensus 265 ~a~~--~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 265 RAIY--MQVGGTTPTGEASREATR-SMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHH--HHTTSCC-----CCTHHH-HHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHH--hCCccccccccchhhcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 9998 5555 44 6888888888999999999999999998877644
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-16 Score=193.77 Aligned_cols=237 Identities=16% Similarity=0.056 Sum_probs=208.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVH 1763 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~ 1763 (1935)
+...|...+..+.+.|++++|+..|+++++..|.. ...|..++.++...| ..+.|...|++|++..|. ...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-----AEAWQFLGITQAENE--NEQAAIVALQRCLELQPNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHH
Confidence 44559999999999999999999999999876532 468999999999999 559999999999999887 4999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHH----------HHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHH
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR----------VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFI 1832 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~----------~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~ 1832 (1935)
..++.+|...|++++|.+.|+++++..|.....|..+ +..+... ++++|..+|+++++..|...+..+|
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 9999999999999999999999999887766666555 7888888 9999999999999999985457999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
..+|.++...|++++|...|+++++..|.+..+|..++..+...|++++|+..|++++. ..|... ..|..+......
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~ 293 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFI-RSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCch-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 677776 688888888999
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 000173 1913 VGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1913 ~G~~e~a~~v~~rAle~v~ 1931 (1935)
.|+.+.|...|++|++.-.
T Consensus 294 ~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 9999999999999998764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-15 Score=178.43 Aligned_cols=252 Identities=10% Similarity=0.033 Sum_probs=121.9
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHH------------HHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY------------FNLE 1735 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ay------------l~le 1735 (1935)
..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ......|..+ +...
T Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (359)
T 3ieg_A 53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE--QEEKEAESQLVKADEMQRLRSQALDA 130 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc--cChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444332200 0011233322 2333
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHH
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQ 1813 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~ 1813 (1935)
...| ..+.|...|+++++..|.. .+|..++.+|...+++++|.+.|++++...|....+|+.++..+... ++++|.
T Consensus 131 ~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 131 FDGA--DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcc--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4444 2244555555555444432 44555555555555555555555555555555555555555555555 555555
Q ss_pred HHHHHHHHhCCCCChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcC
Q 000173 1814 AVVQRALLSLPRHKHIKFISQT------------AILEFKNGVADRGRSMFEGILSEYPKRTDL----WSIYLDQEIRLG 1877 (1935)
Q Consensus 1814 ~ll~ralk~~p~~~~~~~~~~~------------a~le~~~g~~e~Ar~ife~al~~~Pk~~dl----w~~ya~~e~k~g 1877 (1935)
..|+++++..|... ..|..+ |..++..|++++|...|++++...|.+... |..++..+...|
T Consensus 209 ~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 209 SEVRECLKLDQDHK--RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCccch--HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHcc
Confidence 55555555554442 222222 444555555555555555555555554432 333455555555
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1878 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1878 ~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
++++|..+|++++. ..|... ..|..+.......|+.+.|...|++|++
T Consensus 287 ~~~~A~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 287 KPVEAIRICSEVLQ--MEPDNV-NALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp CHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH--hCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555 344444 3555555555555555555555555554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-15 Score=200.49 Aligned_cols=252 Identities=8% Similarity=0.002 Sum_probs=219.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
++..+|...|++++..+|++...|..++..+.+.|++++|+.+++++++..|. ...+|..++.++...| ..++
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g--~~~~ 391 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-----KAVTWLAVGIYYLCVN--KISE 391 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHHTT--CHHH
T ss_pred cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHHhc--cHHH
Confidence 44677888888888888888888888888888899999999999888865442 1468888889999999 5599
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC
Q 000173 1746 VVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1746 a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~ 1823 (1935)
|.++|+++++..|. ...|..++.+|.+.|++++|.++|++++...+.+..+|..++..+... ++++|.++|++++...
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999998876 489999999999999999999999999998888999999999999988 9999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 000173 1824 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE------YPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1896 (1935)
Q Consensus 1824 p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~------~Pk~-~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~p 1896 (1935)
|.+ +.+|..++.++.+.|++++|..+|++++.. .|.+ ..+|..++..+.+.|++++|..+|++++. ..|
T Consensus 472 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p 547 (597)
T 2xpi_A 472 QYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LST 547 (597)
T ss_dssp CCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSS
T ss_pred CCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCC
Confidence 876 588999999999999999999999999988 5554 67899999999999999999999999998 556
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1897 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1897 k~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
... ..|..+.......|+.++|...|++|++.
T Consensus 548 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 548 NDA-NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 666 68888888888999999999999999875
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-15 Score=179.88 Aligned_cols=255 Identities=11% Similarity=0.032 Sum_probs=210.3
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..++.+....|++ .+
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~-~~ 89 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF-----TAARLQRGHLLLKQGKL-DE 89 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCH-HH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----chHHHHHHHHHHHcCCh-HH
Confidence 4557788999999999999999999999999999999999999999999875532 25788888877777764 33
Q ss_pred HHHHHHHHHHhcC---CCH------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C
Q 000173 1745 AVVKVFQRALQYC---DPK------------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1808 (1935)
Q Consensus 1745 ~a~~vferAl~~~---~~~------------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~ 1808 (1935)
.....-+-.-... ... ..+..++.++...+++++|.+.|+++++..|....+|..++..+... +
T Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3ieg_A 90 AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE 169 (359)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC
Confidence 2222222222222 222 33455588999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHc
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY------------LDQEIRL 1876 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~y------------a~~e~k~ 1876 (1935)
+++|...|+++++..|.. ..+|..+|.+++..|++++|...|+++++..|.....|..| +..+.+.
T Consensus 170 ~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 170 PRKAISDLKAASKLKSDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHHHHHHHHHHTTCSCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999998877 58999999999999999999999999999999999988766 6668899
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1877 GDVDLIRGLFERAISLSLPPKKMK---FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1877 g~~e~ar~lferal~~~~~pk~~k---~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
|++++|..+|++++. ..|.... ..|..+.......|+.+.|...++++++.
T Consensus 248 ~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 248 GRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp TCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999998 4454442 12444556777899999999999999875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-15 Score=188.89 Aligned_cols=255 Identities=10% Similarity=0.031 Sum_probs=224.1
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHH------------HH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY------------FN 1733 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ay------------l~ 1733 (1935)
++..+|...|++++..+|++...|..++..+...|++++|+..|+++++..|... .....|..+ +.
T Consensus 74 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~ 151 (450)
T 2y4t_A 74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN--EEKEAQSQLIKSDEMQRLRSQAL 151 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999999999999999999997655321 001344444 44
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHH
Q 000173 1734 LENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1811 (1935)
Q Consensus 1734 le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~ 1811 (1935)
.....| ..+.|...|+++++..|.. .+|..++.+|.+.|++++|.+.|+++++..|.+..+|..++..+... ++++
T Consensus 152 ~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 152 NAFGSG--DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 477788 5599999999999998864 99999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHH
Q 000173 1812 VQAVVQRALLSLPRHKHIKFISQT------------AILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIR 1875 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~~~~~~~~~~------------a~le~~~g~~e~Ar~ife~al~~~Pk~~d----lw~~ya~~e~k 1875 (1935)
|...|++++...|.. ..+|..+ |..++..|++++|..+|++++...|.+.. +|..++.++.+
T Consensus 230 A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 230 SLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999887 4666655 89999999999999999999999999854 78889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1876 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|++++|..+|++++. ..|... ..|..+.......|+.+.|...|++|++.
T Consensus 308 ~g~~~~A~~~~~~a~~--~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQ--MEPDNV-NALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHH--hCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999998 667766 68888888899999999999999999864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-15 Score=185.66 Aligned_cols=254 Identities=11% Similarity=0.065 Sum_probs=227.2
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..++.++...| ..+
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~ 111 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF-----TAARLQRGHLLLKQG--KLD 111 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcC--CHH
Confidence 4557789999999999999999999999999999999999999999999865532 468999999999999 559
Q ss_pred HHHHHHHHHHhcCCCH----HHHHHH------------HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-
Q 000173 1745 AVVKVFQRALQYCDPK----KVHLAL------------LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1807 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~----~v~~~l------------~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~- 1807 (1935)
.|...|+++++..|.. ..|..+ +.+|...+++++|.+.|++++...|....+|..++..+...
T Consensus 112 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG 191 (450)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC
Confidence 9999999999998874 555555 55699999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY------------LDQEIR 1875 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~y------------a~~e~k 1875 (1935)
++++|...|+++++..|.. +.+|..+|.+++..|++++|...|++++...|.+...|..+ +..+..
T Consensus 192 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 192 EPRKAISDLKAASKLKNDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp CGGGGHHHHHHHHHHHCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877 69999999999999999999999999999999999998887 889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1876 LGDVDLIRGLFERAISLSLPPKKMK---FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~pk~~k---~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|++++|..+|++++. ..|.... ..|..+.......|+.+.|...+++|++.
T Consensus 270 ~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 270 DGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999998 5555431 35677777888899999999999999864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-15 Score=194.56 Aligned_cols=252 Identities=9% Similarity=0.006 Sum_probs=226.0
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..++...|++++.. |.+...|..++..+.+.|++++|..+|+++++..|.. ...|..++..+...| ..+.|.
T Consensus 288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g--~~~~A~ 359 (597)
T 2xpi_A 288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN-----LDVYPLHLASLHESG--EKNKLY 359 (597)
T ss_dssp HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----CTTHHHHHHHHHHHT--CHHHHH
T ss_pred HHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc-----HHHHHHHHHHHHHhC--CHHHHH
Confidence 34455666666554 7889999999999999999999999999999765532 247999999999999 569999
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
.+|+++++..|. ...|..++.+|.+.|++++|.++|+++++..+.....|..++..+.+. ++++|.++|+++++..|.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999988876 489999999999999999999999999999999999999999999999 999999999999999987
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKF 1901 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~----~~~pk~~k~ 1901 (1935)
+. .+|..++..+.+.|++++|..+|++++...|.+..+|..++.++.+.|++++|..+|++++.. ...|.....
T Consensus 440 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 440 TH--LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp CS--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 64 899999999999999999999999999999999999999999999999999999999999984 335554226
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1902 LFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1902 l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|..++....++|+.+.|..+|+++++.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999874
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-15 Score=178.41 Aligned_cols=243 Identities=15% Similarity=0.106 Sum_probs=214.3
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~-e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
++..++...|++++..+|++...|..++..+...+ ++++|...|+++++..|.. ...|..+..++...| ..+
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~--~~~ 142 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-----GPAWIAYGHSFAVES--EHD 142 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-----THHHHHHHHHHHHHT--CHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHcc--CHH
Confidence 44667788999999999999999999999999999 9999999999999765532 357999999999999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
.|...|+++++..|.. ..|..++.+|...+++++|.+.|+++++..|.+..+|..++..+... ++++|...|++++..
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999998875 88888999999999999999999999999999999999999999999 999999999999998
Q ss_pred CCC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000173 1823 LPR-------HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1895 (1935)
Q Consensus 1823 ~p~-------~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~ 1895 (1935)
.|. .....+|..+|.++...|++++|...|+++++..|.+..+|..++.++...|++++|...|++++. +.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~ 300 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LR 300 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cC
Confidence 632 122479999999999999999999999999999999999999999999999999999999999998 77
Q ss_pred chhHHHHHHHHHH-HHHHcCCHHH
Q 000173 1896 PKKMKFLFKKYLE-YEKSVGEEER 1918 (1935)
Q Consensus 1896 pk~~k~l~~~yl~-~E~~~G~~e~ 1918 (1935)
|... ..|..+.. ++...|+.+.
T Consensus 301 p~~~-~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 301 RDDT-FSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp SCCH-HHHHHHHHHHHTTTTC---
T ss_pred CCch-HHHHHHHHHHHHHhCchhc
Confidence 7776 45555554 5567777653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-15 Score=183.58 Aligned_cols=253 Identities=14% Similarity=0.056 Sum_probs=219.5
Q ss_pred CCCcHH-HHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCC
Q 000173 1668 APRTPD-EFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1742 (1935)
Q Consensus 1668 ~~~a~~-~ferll~~~P~s----~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~ 1742 (1935)
..++.. .|++++...|++ ...|...+..+...|++++|...|+++++..|.. ...|..++.++...| .
T Consensus 41 ~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~ 113 (368)
T 1fch_A 41 YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-----MEAWQYLGTTQAENE--Q 113 (368)
T ss_dssp -----CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----HHHHHHHHHHHHHTT--C
T ss_pred HHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCc--C
Confidence 344555 666666666665 4679999999999999999999999999765532 468999999999999 5
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHH----------------HHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL----------------RRVQRLL 1805 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~----------------~~~~~l~ 1805 (1935)
.+.|...|++|++..|.. ..|..++.+|...|++++|.+.|++++...|.....|. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 599999999999998864 99999999999999999999999999999988877775 344444
Q ss_pred Hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1806 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1884 (1935)
Q Consensus 1806 ~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~ 1884 (1935)
.. ++++|...|+++++..|......+|..+|.+++..|++++|...|++++...|.+..+|..++.++...|+++.|..
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66 99999999999999999854478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1885 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1885 lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
.|++++. ..|... ..|..+.......|+.+.|...|++|++.-.
T Consensus 273 ~~~~al~--~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 273 AYRRALE--LQPGYI-RSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHH--HCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9999999 667766 6788888888999999999999999998654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-15 Score=170.22 Aligned_cols=199 Identities=14% Similarity=0.039 Sum_probs=169.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1761 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1761 (1935)
|+++..|..++..+.+.|++++|...|+++++..|.. ...|..+..+....| ..+.|...|++|++..|.. .
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~P~~~~ 74 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD-----PEALYWLARTQLKLG--LVNPALENGKTLVARTPRYLG 74 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHH
Confidence 7888999999999999999999999999999765532 358999999999999 5599999999999999875 8
Q ss_pred HHHHHHHHHHHc-----------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH
Q 000173 1762 VHLALLGLYERT-----------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI 1829 (1935)
Q Consensus 1762 v~~~l~~i~~~~-----------~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~ 1829 (1935)
.|..++.+|... |++++|...|+++++..|.+..+|+.++..+... ++++|...|+++++.. . ++
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--~~ 151 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D--TP 151 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--CH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c--ch
Confidence 999999999999 9999999999999999999999999999999999 9999999999999998 3 37
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.+|..+|.++...|++++|...|+++++.+|.+..+|..++.++...|++++|...|+++-.
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=179.52 Aligned_cols=254 Identities=13% Similarity=0.029 Sum_probs=217.0
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..++.++...|+ .+
T Consensus 38 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~--~~ 110 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH-----SKALLRRASANESLGN--FT 110 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTC--HH
T ss_pred hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHHcCC--HH
Confidence 4669999999999999999999999999999999999999999999999865532 3466666666666663 24
Q ss_pred HHHH----------------------------------------------------------------------------
Q 000173 1745 AVVK---------------------------------------------------------------------------- 1748 (1935)
Q Consensus 1745 ~a~~---------------------------------------------------------------------------- 1748 (1935)
.|..
T Consensus 111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 4444
Q ss_pred ---------------------------------HHHHHHhcCCCH--------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000173 1749 ---------------------------------VFQRALQYCDPK--------KVHLALLGLYERTEQNKLADELLYKMI 1787 (1935)
Q Consensus 1749 ---------------------------------vferAl~~~~~~--------~v~~~l~~i~~~~~~~~~A~el~~~~~ 1787 (1935)
.|+++++..|.. ..|..++.++...+++++|.+.|++++
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555442 357777788899999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000173 1788 KKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1788 k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw 1866 (1935)
...|. ...|+.++..+... ++++|...|+++++..|.. ..+|..+|.+++..|++++|...|++++...|.+..+|
T Consensus 271 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 271 NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred hcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99888 99999999999888 9999999999999999876 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1867 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1867 ~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
..++.++...|++++|..+|++++. ..|... ..|..+.......|+.+.|...|++|++.-.
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKL--KFPTLP-EVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998 566666 5788888888999999999999999988654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-14 Score=168.65 Aligned_cols=235 Identities=12% Similarity=0.030 Sum_probs=206.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVH 1763 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~ 1763 (1935)
+...|...+..+...+++++|..+|+++++..|.. ...|..++..+...| ..+.|...|+++++..|. ...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~ 92 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER-----EEAWRSLGLTQAENE--KDGLAIIALNHARMLDPKDIAVH 92 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCcCCHHHH
Confidence 34568899999999999999999999999876532 458888899999999 559999999999999886 4899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHH--------------HH-HHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR--------------VQ-RLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~--------------~~-~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
..++.+|...+++++|.+.|+++++..+.....|..+ +. .+... ++++|...|+++++..|..
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~- 171 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND- 171 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC-
Confidence 9999999999999999999999999999888888777 55 35555 9999999999999999876
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
..+|..+|.+++..|++++|...|++++...|.+..+|..++.++...|++++|...|++++. ..|... ..|..+.
T Consensus 172 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-~~~~~l~ 247 (327)
T 3cv0_A 172 -AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYV-RVMYNMA 247 (327)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCH-HHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999 666666 5788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1908 EYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1908 ~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
......|+.+.|...+++|++.-.
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC
Confidence 888899999999999999987654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=179.74 Aligned_cols=237 Identities=11% Similarity=0.054 Sum_probs=200.1
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 000173 1678 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1757 (1935)
Q Consensus 1678 ll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~ 1757 (1935)
++..+|++..+|..++..+...+++++|...|++|++..|.. ..+|..+..+....|. +.+.|...|++|++.+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~-----~~a~~~~g~~l~~~g~-d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN-----YTVWHFRRVLLKSLQK-DLHEEMNYITAIIEEQ 162 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHC
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC-----HHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHC
Confidence 345678889999999999999999999999999999765532 4689999999899994 1599999999999999
Q ss_pred CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 000173 1758 DPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT 1835 (1935)
Q Consensus 1758 ~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~ 1835 (1935)
|.. .+|..++.+|...+++++|...|++++...|.+..+|+.++..+... ++++|...|++++...|.+ ..+|..+
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--~~a~~~l 240 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQR 240 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence 875 99999999999999999999999999999999999999999999999 9999999999999999987 5899999
Q ss_pred HHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1836 AILEFK-NGVADRG-----RSMFEGILSEYPKRTDLWSIYLDQEIRLG--DVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1836 a~le~~-~g~~e~A-----r~ife~al~~~Pk~~dlw~~ya~~e~k~g--~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
|.++.. .|..++| ...|++++..+|.+..+|+.++.++...| ++++|...++++ . ..|... ..+..+.
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~-~al~~La 316 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSP-YLIAFLV 316 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCH-HHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCH-HHHHHHH
Confidence 999998 5665777 58899999999999999999999998887 688899988887 5 555554 4555555
Q ss_pred HHHHHcC--------C-HHHHHHHHHHH
Q 000173 1908 EYEKSVG--------E-EERIEYVKQKA 1926 (1935)
Q Consensus 1908 ~~E~~~G--------~-~e~a~~v~~rA 1926 (1935)
++..+.| + .++|..+|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 5555443 2 47788888887
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-14 Score=175.66 Aligned_cols=233 Identities=8% Similarity=0.015 Sum_probs=208.6
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD-VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1743 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e-~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~ 1743 (1935)
.++..+|...|+++|..+|++..+|..++..+..+++ +++|...|++|++..|.. ..+|..+..+....|.+
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-----~~a~~~~g~~~~~~g~~-- 182 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-----YQVWHHRRVLVEWLRDP-- 182 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCC--
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHccCH--
Confidence 3558899999999999999999999999999999996 999999999999765532 46999999999999966
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CHHHH-----HHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQEGV-----QAV 1815 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~--~~e~A-----~~l 1815 (1935)
+.|...|++|++..|.+ ..|..++.++.+.|++++|.+.|++++...|.+..+|+.++..+... ..++| ...
T Consensus 183 ~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 183 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 99999999999999875 99999999999999999999999999999999999999999999994 54666 589
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------C-HHHHHH
Q 000173 1816 VQRALLSLPRHKHIKFISQTAILEFKNG--VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG--------D-VDLIRG 1884 (1935)
Q Consensus 1816 l~ralk~~p~~~~~~~~~~~a~le~~~g--~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g--------~-~e~ar~ 1884 (1935)
|++|+...|.+ ..+|..++.++...| ++++|...++++ ...|.+..++..+++++.+.| + .++|..
T Consensus 263 ~~~Al~l~P~~--~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 263 TLEMIKLVPHN--ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHHHSTTC--HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCC--HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 99999999988 589999999999888 689999999998 889999999999999999874 2 589999
Q ss_pred HHHHH-HhcCCCchhHHHHHHHHHHHH
Q 000173 1885 LFERA-ISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1885 lfera-l~~~~~pk~~k~l~~~yl~~E 1910 (1935)
+|+++ +. +.|.+. .+|..+....
T Consensus 340 ~~~~l~~~--~DP~r~-~~w~~~~~~l 363 (382)
T 2h6f_A 340 LCEILAKE--KDTIRK-EYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHT--TCGGGH-HHHHHHHHHH
T ss_pred HHHHHHHH--hCchhH-HHHHHHHHHH
Confidence 99999 87 888887 5787776543
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-17 Score=181.56 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=101.4
Q ss_pred CCCCCEEEEEEEEEeeceEEEEe--CCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l--~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++|+++.|+|++|+++|+||+| .++++|+||+++++|.++.++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcC
Confidence 47999999999999999999999 5789999999999999999999999999999999999999999999999999888
Q ss_pred ccccccccccCCCCCCcEEEeEEEEEee-ceEEEEEecCceeEEeeccccCcc
Q 000173 1454 TASQSEINNLSNLHVGDIVIGQIKRVES-YGLFITIENTNLVGLCHVSELSED 1505 (1935)
Q Consensus 1454 ~~~~~~~~~~~~~~~G~~v~G~V~~v~~-~G~FV~l~~~~v~Gl~h~sels~~ 1505 (1935)
||... ...++.|+++.|.|+++++ || |.|.+ +++||+|+|+.++.
T Consensus 93 p~~~~----~~~~~~g~~v~g~v~~i~~~~g--v~l~~-giegl~h~s~~~~~ 138 (182)
T 1kl9_A 93 EAIKC----EDKFTKSKTVYSILRHVAEVLE--YTKDE-QLESLFQRTAWVFD 138 (182)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHTT--CCSHH-HHHHHHHHTHHHHH
T ss_pred hHHHH----HHhccCCCEEEEEEEEchhhcC--CcccC-ChhheEEeeecchh
Confidence 77432 4578999999999999998 99 78877 89999999987665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-14 Score=165.56 Aligned_cols=237 Identities=8% Similarity=-0.004 Sum_probs=201.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----H
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----K 1760 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~----~ 1760 (1935)
+...|+.++..+...+++++|+..|+++++..|... ..|..++..+...| ..+.|...|+++++..+. .
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~ 74 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP-----YIYNRRAVCYYELA--KYDLAQKDIETYFSKVNATKAKS 74 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS-----TTHHHHHHHHHHTT--CHHHHHHHHHHHHTTSCTTTCCH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHHh--hHHHHHHHHHHHHhccCchhHHH
Confidence 346788999999999999999999999998765432 37888888999999 459999999999994322 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.+|...+++++|.+.|+++++..|....+|..++..+... ++++|...|+++++..|.. ..+|..+|...
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~ 152 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD--PKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc--HHHHHHHHHHH
Confidence 66999999999999999999999999999999999999999999999 9999999999999998777 68999999666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC-CCch----hHHHHHHHHHHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD---VDLIRGLFERAISLS-LPPK----KMKFLFKKYLEYEK 1911 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~---~e~ar~lferal~~~-~~pk----~~k~l~~~yl~~E~ 1911 (1935)
+..+++++|...|+++++.+|.+...|..++..+...++ .+.|...|++++... ..|. .....|..+..+..
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 666799999999999999999999999999999999988 888999999999831 0122 11145667777788
Q ss_pred HcCCHHHHHHHHHHHHHHH
Q 000173 1912 SVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1912 ~~G~~e~a~~v~~rAle~v 1930 (1935)
..|+.+.|...|++|++.-
T Consensus 233 ~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALD 251 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 8999999999999998753
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=159.68 Aligned_cols=222 Identities=12% Similarity=0.008 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------- 1759 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~------- 1759 (1935)
..|...+..+...+++++|...|+++++.. . . ..+|..++..+...| ..+.|...|+++++..|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-~----~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~ 77 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-K-D----ITYLNNRAAAEYEKG--EYETAISTLNDAVEQGREMRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-C----THHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-c----HHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCcccccchHH
Confidence 444555555555555555555555555432 1 1 234444444444555 225555555555544332
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000173 1760 -KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1837 (1935)
Q Consensus 1760 -~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~ 1837 (1935)
..+|..++.+|...+++++|.+.|++++...+. .. .+... ++++|...|++++...|.. ..+|..+|.
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~-------~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~ 147 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-AD-------ILTKLRNAEKELKKAEAEAYVNPEK--AEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HH-------HHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-hH-------HHHHHhHHHHHHHHHHHHHHcCcch--HHHHHHHHH
Confidence 144555555555555555555555555544432 11 12222 3455555555555444332 344555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000173 1838 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1838 le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e 1917 (1935)
+++..|++++|...|++++...|.+..+|..++..+...|++++|...|++++. ..|... ..|..+.......|+.+
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~-~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFV-RAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHH-HHHHHHHHHHHHHhhHH
Confidence 555555555555555555555555555555555555555555555555555554 333333 34444444444455555
Q ss_pred HHHHHHHHHHHH
Q 000173 1918 RIEYVKQKAMEY 1929 (1935)
Q Consensus 1918 ~a~~v~~rAle~ 1929 (1935)
.|...+++|++.
T Consensus 225 ~A~~~~~~a~~~ 236 (258)
T 3uq3_A 225 SALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-14 Score=162.81 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVH 1763 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~ 1763 (1935)
.+..|...+..+...+++++|...|+++++..|.. ..+|..++..+...| ..+.|...|+++++..|. ..+|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 94 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-----AIPYINFANLLSSVN--ELERALAFYDKALELDSSAATAY 94 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCcchHHH
Confidence 45677888888888888999999998888754432 357888888888888 458888999999888775 4888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1842 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1842 (1935)
..++.+|...+++++|.+.|+++++..+....+|..++..+... ++++|...|+++++..|.. ..+|..+|.+++..
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--TEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHc
Confidence 88888999999999999999999988888888999999888888 9999999999999888766 57888889999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000173 1843 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1911 (1935)
Q Consensus 1843 g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~ 1911 (1935)
|++++|...|++++...|.+..+|..++.++...|++++|...|++++. ..|... ..|..+..+..
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~-~~~~~~~~l~~ 238 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHM-LALHAKKLLGH 238 (243)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCH-HHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchH-HHHHHHHHHHh
Confidence 9999999999999999998888899999999999999999999999888 566555 35554444433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-14 Score=182.82 Aligned_cols=249 Identities=10% Similarity=0.028 Sum_probs=200.9
Q ss_pred CCCcHHHHHHHHH-----c--C-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 000173 1668 APRTPDEFERLVR-----S--S-------PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1733 (1935)
Q Consensus 1668 ~~~a~~~ferll~-----~--~-------P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~ 1733 (1935)
..+|...|++++. . + |++...|..++..+...|++++|...|+++++..|. ...|..++.
T Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~l~~ 278 (514)
T 2gw1_A 205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR------VNSYIYMAL 278 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc------HHHHHHHHH
Confidence 5566777777776 3 3 455678888888888888888888888888876553 457888888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHH
Q 000173 1734 LENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1811 (1935)
Q Consensus 1734 le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~ 1811 (1935)
++...|++ +.|...|+++++..|.. .+|..++.+|...+++++|...|++++...|....+|..++..+... ++++
T Consensus 279 ~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 279 IMADRNDS--TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHTSSCC--TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHCCCH--HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHH
Confidence 88888855 88888888888887754 78888888888888888888888888888888888888888888888 8888
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCHHHH
Q 000173 1812 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD------LWSIYLDQEIR---LGDVDLI 1882 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d------lw~~ya~~e~k---~g~~e~a 1882 (1935)
|...|+++++..|... .+|..+|.+++..|++++|..+|++++...|.+.. +|..++..+.. .|+++.|
T Consensus 357 A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A 434 (514)
T 2gw1_A 357 CETLFSEAKRKFPEAP--EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434 (514)
T ss_dssp HHHHHHHHHHHSTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH
T ss_pred HHHHHHHHHHHcccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH
Confidence 8888888888887764 78888888888888888888888888888877644 88888888888 8888888
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
...|++++. ..|... ..|..+.......|+.+.|...|++|++.
T Consensus 435 ~~~~~~a~~--~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 435 TNLLEKASK--LDPRSE-QAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 888888887 556666 56777777778888888888888888764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-14 Score=183.64 Aligned_cols=250 Identities=12% Similarity=0.042 Sum_probs=214.6
Q ss_pred CCCcHHHHHHHHHcCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCC
Q 000173 1668 APRTPDEFERLVRSSPNSSFV-------WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1740 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~l-------W~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~ 1740 (1935)
..++...|++++..+|++... |..++.++...+++++|...|+++++..|. ...|..+..++...|+
T Consensus 218 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 218 LTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHhcC
Confidence 446777889999999998765 555556778889999999999999986553 3578888888888885
Q ss_pred CCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1741 PPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1741 ~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
+ +.|...|+++++..|.. .+|..++.+|...+++++|.+.|++++...|....+|..++..+... ++++|...|++
T Consensus 292 ~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 292 S--QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp C--HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 99999999999998874 89999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHc----------CCHHHH
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL------WSIYLDQEIRL----------GDVDLI 1882 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl------w~~ya~~e~k~----------g~~e~a 1882 (1935)
+++..|.+. .+|..+|.++...|++++|...|++++...|.+... +...+.++... |++++|
T Consensus 370 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 370 TKLKFPTLP--EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHhCCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 999998874 899999999999999999999999999988765443 44556777777 999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
...|++++. ..|... ..|..+.......|+.+.|...|++|++.-
T Consensus 448 ~~~~~~a~~--~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 448 IKLLTKACE--LDPRSE-QAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH--hCCCCH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999998 667766 678888888889999999999999998763
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-13 Score=156.25 Aligned_cols=215 Identities=7% Similarity=-0.024 Sum_probs=193.2
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-h-hhHHHHHHHHHHHHHHcCCCC
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE-E-NEKLNIWVAYFNLENEYGNPP 1742 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e-e-~Ekl~lW~ayl~le~~~g~~~ 1742 (1935)
.++..+|...|++++..+ ++...|..++..+...+++++|...++++++..|... + .....+|..+..++...+ .
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 94 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG--D 94 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--C
T ss_pred hccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc--c
Confidence 455788899999999988 8899999999999999999999999999998655321 1 111478889999999999 5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
.+.|...|+++++..+... ++...+++++|.+.|++++...+....+|..++..+... ++++|...|++++.
T Consensus 95 ~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 95 LKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167 (258)
T ss_dssp HHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5999999999999998854 455556678999999999999999999999999999999 99999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..++..+...|+++.|...|++++.
T Consensus 168 ~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 168 RAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99886 589999999999999999999999999999999999999999999999999999999999998
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-13 Score=159.22 Aligned_cols=207 Identities=12% Similarity=0.029 Sum_probs=178.7
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000173 1682 SPNS-SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1759 (1935)
Q Consensus 1682 ~P~s-~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~- 1759 (1935)
+|.+ ...|..++..+...+++++|...|+++++..|.. ..+|..++.++...| ..+.|.+.|+++++..|.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~ 104 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS-----ADAHAALAVVFQTEM--EPKLADEEYRKALASDSRN 104 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCcCc
Confidence 4554 7888999999999999999999999999765432 357888888888888 459999999999988875
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1760 KKVHLALLGLYERTEQNKLADELLYKMIK--KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~~~~~~~A~el~~~~~k--~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
..+|..++.+|...+++++|.+.|++++. ..+....+|..++..+... ++++|...|+++++..|.. ..+|..+|
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la 182 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ--PSVALEMA 182 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc--HHHHHHHH
Confidence 48899999999999999999999999988 6777888999999999888 9999999999999998876 58899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
.+++..|++++|...|++++...|.+.+.|..++.++...|+.++|+.+|++++. ..|...
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~ 243 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSL 243 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCH
Confidence 9999999999999999999999999999999999999999999999999999988 555554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.7e-14 Score=164.13 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=204.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...+++++|...++++++ .+...+ -....|..+..++...| ..+
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~-~~~~~~~~lg~~~~~~~--~~~ 91 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK-AKSADFEYYGKILMKKG--QDS 91 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-CCHHHHHHHHHHHHHTT--CHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-HHHHHHHHHHHHHHHcc--cHH
Confidence 44577889999999999999999999999999999999999999999997 442221 12456889999999999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
.|...|++|++..|.. .+|..++.+|...+++++|.+.|++++...|....+|+.++..++.. ++++|.+.|+++++.
T Consensus 92 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998875 99999999999999999999999999999999999999999445555 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1823 LPRHKHIKFISQTAILEFKNGV---ADRGRSMFEGILSEY---PKR-----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~---~e~Ar~ife~al~~~---Pk~-----~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.|.. ...|...|..+...|+ +++|...|+++++.. |.. ..+|..++.++...|++++|...|++++.
T Consensus 172 ~p~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 172 KPNI--YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp STTC--HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cccc--hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9887 5899999999998898 899999999999886 552 35788999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHH
Q 000173 1892 LSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1892 ~~~~pk~~k~l~~~yl~~E 1910 (1935)
+.|.+. ..|.....+.
T Consensus 250 --~~p~~~-~a~~~l~~~~ 265 (272)
T 3u4t_A 250 --LDPTNK-KAIDGLKMKL 265 (272)
T ss_dssp --HCTTCH-HHHHHHC---
T ss_pred --cCccHH-HHHHHhhhhh
Confidence 667766 4565554443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=176.86 Aligned_cols=258 Identities=10% Similarity=-0.020 Sum_probs=222.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchh-----------------------
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN----------------------- 1722 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~----------------------- 1722 (1935)
++..+|...|++++..+|++...|..++..+...|++++|+..|+++++..|.....
T Consensus 53 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (514)
T 2gw1_A 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGD 132 (514)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788899999999999999999999999999999999999999998765422111
Q ss_pred ---------------------------------------------------hHHHHHHHHHHHHHH---cCCCCHHHHHH
Q 000173 1723 ---------------------------------------------------EKLNIWVAYFNLENE---YGNPPEEAVVK 1748 (1935)
Q Consensus 1723 ---------------------------------------------------Ekl~lW~ayl~le~~---~g~~~~e~a~~ 1748 (1935)
.....|+........ .| ..+.|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~ 210 (514)
T 2gw1_A 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE--SYDKADE 210 (514)
T ss_dssp ------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTT--HHHHHHH
T ss_pred HHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhc--cHHHHHH
Confidence 002334444433333 56 4599999
Q ss_pred HHHHHHh-----c--CC-------C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHH
Q 000173 1749 VFQRALQ-----Y--CD-------P-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGV 1812 (1935)
Q Consensus 1749 vferAl~-----~--~~-------~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A 1812 (1935)
.|+++++ . .| . ...|..++.+|...|++++|...|++++...|. ..+|..++..+... ++++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHH
Confidence 9999999 4 22 2 288999999999999999999999999999998 99999999999999 99999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1813 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1813 ~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
...|+++++..|... .+|..+|.+++..|++++|...|++++...|.+..+|..++.++...|+++.|..+|++++.
T Consensus 290 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 366 (514)
T 2gw1_A 290 YNYFDKALKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR- 366 (514)
T ss_dssp GGHHHHHHTTCTTCT--HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhcCcCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 999999999998874 89999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1893 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1893 ~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
..|... ..|..+.......|+.+.|...+++|++.-.
T Consensus 367 -~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 367 -KFPEAP-EVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp -HSTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -HcccCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 555555 5788888888899999999999999988644
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.6e-13 Score=151.20 Aligned_cols=208 Identities=13% Similarity=0.047 Sum_probs=187.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000173 1681 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1759 (1935)
Q Consensus 1681 ~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~- 1759 (1935)
.+|++...|..++..+...|++++|+..|+++++..|.. ..+|..++.++...| ..+.|...|+++++..|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~ 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-----ELAWLVRAEIYQYLK--VNDKAQESFRQALSIKPDS 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTC
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCC
Confidence 468889999999999999999999999999999865532 358888899999999 559999999999999876
Q ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 000173 1760 KKVHLALLGLYERT-EQNKLADELLYKMIK--KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT 1835 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~~-~~~~~A~el~~~~~k--~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~ 1835 (1935)
...|..++.+|... +++++|.+.|++++. ..+....+|..++..+... ++++|...|+++++..|.. ..+|..+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l 153 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF--PPAFKEL 153 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--chHHHHH
Confidence 48999999999999 999999999999998 5566789999999999999 9999999999999999876 6899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1836 AILEFKNGVADRGRSMFEGILSEYP-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~al~~~P-k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
|.+++..|++++|...|++++...| .+...|...+.++...|+.+.+..+++.++. ..|...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~ 216 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSE 216 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCH
Confidence 9999999999999999999999999 9999999999999999999999999999987 455544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-13 Score=153.23 Aligned_cols=194 Identities=14% Similarity=0.078 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
..|..+.......| ..+.|...|++|++..|.. ..|..++.+|.+.|++++|...|+++++..|++...|+.++..+
T Consensus 6 ~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALG--RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 47888888889999 5599999999999999875 99999999999999999999999999999999999999999988
Q ss_pred HHc------------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1805 LKQ------------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1805 ~~~------------~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
... ++++|...|+++++..|.+ ..+|..+|.++...|++++|...|+++++.. .+..+|..++.+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 763 6899999999999999987 5899999999999999999999999999999 999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1873 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1873 e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
+...|++++|...|++++. ..|... ..|..+.......|+.+.|...|+++-
T Consensus 161 ~~~~g~~~~A~~~~~~al~--~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALE--QAPKDL-DLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCh-HHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999 777777 578888888888999999999888764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-13 Score=145.96 Aligned_cols=169 Identities=15% Similarity=0.072 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
..+|..+...+...| ..++|...|++|++.+|.. ..|..++.+|.+.+++++|.+.+.++....+....+|..++..
T Consensus 5 ~~iy~~lG~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKG--DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 468999999999999 4599999999999999875 9999999999999999999999999999999999999999999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+... +++.|...+.++++..|.+ ..+|..+|.+++..|++++|...|+++++.+|.+..+|..++..+.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVY--ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999 9999999999999999887 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhH
Q 000173 1883 RGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~ 1899 (1935)
...|++|+. +.|+++
T Consensus 161 ~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHh--CCccCH
Confidence 999999999 777765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-13 Score=153.97 Aligned_cols=203 Identities=12% Similarity=0.100 Sum_probs=179.6
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
++..+|...|++++..+|++...|..++..+...+++++|...++++++..+. ...+|..++.++...| ..+.
T Consensus 37 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~--~~~~ 109 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-----AATAYYGAGNVYVVKE--MYKE 109 (243)
T ss_dssp -----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTT--CHHH
T ss_pred hCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-----chHHHHHHHHHHHHhc--cHHH
Confidence 45778888999999999999999999999999999999999999999976553 2468889999999999 5599
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC
Q 000173 1746 VVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1746 a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~ 1823 (1935)
|...|+++++..|. ..+|..++.+|...+++++|.+.|++++...+....+|..++..+... ++++|...|+++++..
T Consensus 110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999876 489999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1824 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1824 p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
|.. ..+|..+|.+++..|++++|...|+++++..|.+..+|..++.+....+
T Consensus 190 ~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 190 PGH--ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TTC--HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred ccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 876 5899999999999999999999999999999999999998887765544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-12 Score=151.61 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
..+|..++..+...|++ +.|...|+++++..|. ...|..++.+|...+++++|.+.|++++...+....+|..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNT--EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCT--GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 56899999999999965 9999999999999876 48999999999999999999999999999999999999999999
Q ss_pred HHHc-CHHHHHHHHHHHHH--hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALL--SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1880 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk--~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e 1880 (1935)
+... ++++|.++|++++. ..|. ...+|..+|.+++..|++++|...|+++++..|.+..+|..++.++...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPE--RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 9999 99999999999998 4443 36899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1881 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|..+|++++. ..|... ..|..+..+....|+.+.|...++++++.
T Consensus 193 ~A~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQ--GGGQNA-RSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHT--TSCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCcCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999998 666666 56777788888899999999999999875
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=157.10 Aligned_cols=224 Identities=10% Similarity=0.020 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCC-HHHH
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY--CDP-KKVH 1763 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~--~~~-~~v~ 1763 (1935)
..+.-++..++.+|+++.|+..++.. .. ..+..+..++.+....+ ..+.|.+.|++++.. .|. ..+|
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~~----~~----~~~~a~~~la~~~~~~~--~~~~A~~~l~~ll~~~~~P~~~~~~ 104 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKPS----SA----PELQAVRMFAEYLASHS--RRDAIVAELDREMSRSVDVTNTTFL 104 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTT----SC----HHHHHHHHHHHHHHCST--THHHHHHHHHHHHHSCCCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhccc----CC----hhHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhcccCCCCHHHH
Confidence 34445555566666666665544321 10 11223333444444444 346666666666543 232 2556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1842 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1842 (1935)
+.++.+|.+.|++++|.+.|++ +.+..+|..++..+.+. ++++|.+.|+++++..|......+...|..+....
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~ 179 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG 179 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCc
Confidence 6666666666666666666655 45666666666666666 66666666666666655542112222233334444
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH-HHHH
Q 000173 1843 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE-RIEY 1921 (1935)
Q Consensus 1843 g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e-~a~~ 1921 (1935)
|++++|..+|++++..+|.+..+|+.++..+.+.|++++|...|++++. ..|..+ ..|..++.+....|... .+..
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~-~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHP-ETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHcCCCHHHHHH
Confidence 5666666666666666666666666666666666666666666666665 555555 34555555555555543 3455
Q ss_pred HHHHHHH
Q 000173 1922 VKQKAME 1928 (1935)
Q Consensus 1922 v~~rAle 1928 (1935)
+++++++
T Consensus 257 ~~~~~~~ 263 (291)
T 3mkr_A 257 YLSQLKD 263 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=162.13 Aligned_cols=265 Identities=10% Similarity=0.004 Sum_probs=219.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHcC
Q 000173 1665 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYG 1739 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s----~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~-ee~Ekl~lW~ayl~le~~~g 1739 (1935)
.++..+|...|++++...|++ ..+|..++..+...|++++|...|++|+...... .......+|..+..++...|
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 455778899999999999988 4689999999999999999999999999753321 12233567888888889999
Q ss_pred CCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHhcC-
Q 000173 1740 NPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQ--------------------NKLADELLYKMIKKFK- 1791 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~--------------------~~~A~el~~~~~k~~~- 1791 (1935)
..+.|...|++|++..+.. .+|..++.+|...|+ +++|.+.|++++..+.
T Consensus 102 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 102 --NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5599999999999876532 689999999999999 9999999999987642
Q ss_pred -----CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1792 -----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1792 -----~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~----~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
....+|..++..+... ++++|...|+++++..+.... ..+|..+|.+++..|++++|...|++++...|.
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 3356789999999999 999999999999988765432 348999999999999999999999999988766
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1862 R------TDLWSIYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1862 ~------~dlw~~ya~~e~k~g~~e~ar~lferal~~----~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
. ..+|..++.++...|++++|...|++++.. ...+... ..|..+.......|+.+.|...+++|++...
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG-RACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4 568899999999999999999999999972 1122223 4677777788889999999999999998865
Q ss_pred h
Q 000173 1932 S 1932 (1935)
Q Consensus 1932 ~ 1932 (1935)
.
T Consensus 339 ~ 339 (406)
T 3sf4_A 339 E 339 (406)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=163.79 Aligned_cols=265 Identities=9% Similarity=0.009 Sum_probs=219.0
Q ss_pred ccCCCCcHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHHcC
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSS----FVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLNIWVAYFNLENEYG 1739 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~----~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~-~ee~Ekl~lW~ayl~le~~~g 1739 (1935)
.++..+|...|++++...|++. .+|..++..+...|++++|...|++|+..... ........+|..+..++...|
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4567889999999999999986 58999999999999999999999999975321 112234578888889999999
Q ss_pred CCCHHHHHHHHHHHHhcCC------C-HHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHhcC----
Q 000173 1740 NPPEEAVVKVFQRALQYCD------P-KKVHLALLGLYERTEQ-----------------NKLADELLYKMIKKFK---- 1791 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~------~-~~v~~~l~~i~~~~~~-----------------~~~A~el~~~~~k~~~---- 1791 (1935)
..+.|...|++|++..+ . ...|..++.+|...++ +++|.+.|++++..++
T Consensus 141 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 218 (411)
T 4a1s_A 141 --RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD 218 (411)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 55999999999998842 1 2789999999999999 9999999999887642
Q ss_pred --CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 000173 1792 --HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-- 1862 (1935)
Q Consensus 1792 --~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~----~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~-- 1862 (1935)
....+|..++..+... ++++|...|++++...+.... ..+|..+|.+++..|++++|...|++++...|..
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 2355889999999999 999999999999998765321 2488999999999999999999999999987753
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1863 ----TDLWSIYLDQEIRLGDVDLIRGLFERAISLS----LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1863 ----~dlw~~ya~~e~k~g~~e~ar~lferal~~~----~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
..+|..++.++...|++++|..+|++++... ..+..+ ..|..+.......|+.+.|...+++|++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA-RACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999999999721 122223 46777778888899999999999999987653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-13 Score=169.83 Aligned_cols=207 Identities=10% Similarity=-0.008 Sum_probs=188.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000173 1673 DEFERLVRSSPNSSFVWIKYMAFMLSMADV-EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1751 (1935)
Q Consensus 1673 ~~ferll~~~P~s~~lW~~y~~~~l~~~e~-dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vfe 1751 (1935)
..++......|++...|..++..+...+++ ++|...|++|++..|.. ...|..+..++...| ..++|.+.|+
T Consensus 89 ~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g--~~~~A~~~~~ 161 (474)
T 4abn_A 89 QQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-----VEAWNQLGEVYWKKG--DVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 455666677899999999999999999999 99999999999875532 468999999999999 5599999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------cCHHHHH
Q 000173 1752 RALQYCDPKKVHLALLGLYERT---------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK---------QQQEGVQ 1813 (1935)
Q Consensus 1752 rAl~~~~~~~v~~~l~~i~~~~---------~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~---------~~~e~A~ 1813 (1935)
+|++..|....|..++.+|... +++++|.+.|++++...|.+..+|+.++..+.. .++++|.
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 9999999989999999999999 999999999999999999999999999998875 2699999
Q ss_pred HHHHHHHHhCC---CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1814 AVVQRALLSLP---RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1814 ~ll~ralk~~p---~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
..|++|++..| .. ..+|..+|.+++..|++++|...|+++++.+|.+..+|..++.++...|++++|...+.+
T Consensus 242 ~~~~~al~~~p~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 242 SAYAQAEKVDRKASSN--PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHCGGGGGC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCcccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999988 55 699999999999999999999999999999999999999999999999998888876654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-12 Score=140.31 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000173 1759 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1837 (1935)
Q Consensus 1759 ~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~ 1837 (1935)
...+|+.++.+|.+.|++++|.+.|+++++..|++..+|..++..+... ++++|...+.+++...|.. ..+|..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS--AEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--HHHHHHHHH
Confidence 4579999999999999999999999999999999999999999999999 9999999999999999887 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000173 1838 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1838 le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e 1917 (1935)
.+...++++.|...|++++...|.+.++|..++.++.+.|++++|...|++++. ..|... ..|..........|+.+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~-~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFI-RAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhh-hHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999999 777777 68888888888999999
Q ss_pred HHHHHHHHHHHH
Q 000173 1918 RIEYVKQKAMEY 1929 (1935)
Q Consensus 1918 ~a~~v~~rAle~ 1929 (1935)
+|...|++|++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-12 Score=156.82 Aligned_cols=265 Identities=11% Similarity=0.008 Sum_probs=215.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHcC
Q 000173 1665 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYG 1739 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s----~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~-ee~Ekl~lW~ayl~le~~~g 1739 (1935)
.++..+|...|++++...|++ ..+|..++..+...|++++|...+++|+...... .......+|..+..++...|
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 456788999999999999998 5788899999999999999999999999753321 12233568888888889999
Q ss_pred CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHhc--
Q 000173 1740 NPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ--------------------NKLADELLYKMIKKF-- 1790 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~-------~~v~~~l~~i~~~~~~--------------------~~~A~el~~~~~k~~-- 1790 (1935)
..+.|...|++|++..+. ...|..++.+|...++ +++|.+.|++++...
T Consensus 98 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 98 --NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 559999999999987542 1589999999999999 999999999988753
Q ss_pred ----CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1791 ----KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1791 ----~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~----~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
+....+|..++..+... ++++|...|++++...+.... ..+|..+|.+++..|++++|..+|++++...|.
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 22356788999999999 999999999999987654321 348999999999999999999999999988765
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1862 R------TDLWSIYLDQEIRLGDVDLIRGLFERAISLS----LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1862 ~------~dlw~~ya~~e~k~g~~e~ar~lferal~~~----~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
. ..+|..++.++...|++++|...|++++... .++... ..|..+.......|+.+.|...+++|++..+
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG-RACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4 5678899999999999999999999998721 111223 4677777888889999999999999998765
Q ss_pred h
Q 000173 1932 S 1932 (1935)
Q Consensus 1932 ~ 1932 (1935)
+
T Consensus 335 ~ 335 (338)
T 3ro2_A 335 E 335 (338)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-11 Score=142.28 Aligned_cols=225 Identities=8% Similarity=-0.120 Sum_probs=187.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHhcC
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE----YGNPPEEAVVKVFQRALQYC 1757 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~----~g~~~~e~a~~vferAl~~~ 1757 (1935)
+|+++..|..++..+...+++++|...|++|++. .. ...|..+..++.. .+ +.++|...|++|++..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~------~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-KE------NSGCFNLGVLYYQGQGVEK--NLKKAASFYAKACDLN 72 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC------HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CC------HHHHHHHHHHHHcCCCcCC--CHHHHHHHHHHHHHCC
Confidence 5788999999999999999999999999999972 11 3467777788777 78 5599999999999886
Q ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c-CHHHHHHHHHHHHHhCCCCCh
Q 000173 1758 DPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQRALLSLPRHKH 1828 (1935)
Q Consensus 1758 ~~~~v~~~l~~i~~~----~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~----~-~~e~A~~ll~ralk~~p~~~~ 1828 (1935)
....|..++.+|.. .+++++|.+.|++++.. .....|+.++.++.. . ++++|...|++++... +
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~ 145 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----D 145 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----c
Confidence 56888999999999 99999999999999986 588999999999998 7 9999999999999864 3
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchhHH
Q 000173 1829 IKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGLFERAISLSLPPKKMK 1900 (1935)
Q Consensus 1829 ~~~~~~~a~le~~----~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e~ar~lferal~~~~~pk~~k 1900 (1935)
...+..+|.++.. .+++++|...|+++++. .+...|..++.++.. .+++++|...|++++. ..+.
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~~~~--- 218 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE--LENG--- 218 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH--TTCH---
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh--CCCH---
Confidence 5789999999998 89999999999999977 456788999999999 9999999999999998 4432
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 000173 1901 FLFKKYLEYEKS----VGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1901 ~l~~~yl~~E~~----~G~~e~a~~v~~rAle~ 1929 (1935)
..+..+..+... .++.+.|...|++|++.
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 345555556666 78899999999998865
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-11 Score=139.49 Aligned_cols=200 Identities=13% Similarity=0.000 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000173 1724 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1802 (1935)
Q Consensus 1724 kl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~ 1802 (1935)
...+|..++......| ..+.|...|+++++..|. ...|..++.+|...+++++|.+.|++++...+....+|..++.
T Consensus 7 ~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQ--DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3568999999999999 559999999999999886 4899999999999999999999999999999999999999999
Q ss_pred HHHHc--CHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 000173 1803 RLLKQ--QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1879 (1935)
Q Consensus 1803 ~l~~~--~~e~A~~ll~ralk~~p~-~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~ 1879 (1935)
++... ++++|...|+++++ .|. .....+|..+|.++...|++++|...|++++...|.+..+|..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99887 89999999999999 332 233689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1880 DLIRGLFERAISLSLPP-KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1880 e~ar~lferal~~~~~p-k~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
++|..+|++++. ..| ... ..|.....++...|+.+.+...++.+.+.
T Consensus 164 ~~A~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQS--RVEVLQA-DDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHH--HHCSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999998 555 555 45667777888899999999998887653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=166.67 Aligned_cols=255 Identities=13% Similarity=0.036 Sum_probs=190.6
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFML---SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l---~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
..+|...|++++..+|+++..|..++..+. ..++.++|.+.|++|++..|... .-..++...+..+....+ ..+
T Consensus 154 y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~--~~~ 230 (472)
T 4g1t_A 154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ-YLKVLLALKLHKMREEGE--EEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH-HHHHHHHHHHHHCC--------C
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch-HHHHHHHHHHHHHHhhhh--HHH
Confidence 457889999999999999999999887754 45778899999999997655322 111122233344444455 347
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------------
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---------------- 1807 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~---------------- 1807 (1935)
.|.+.|++|+...|.. .+|..++.+|...+++++|.+.|+++++..|++..+|..++..+...
T Consensus 231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8999999999998875 99999999999999999999999999999999999999998876532
Q ss_pred ----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH-HHcCCH
Q 000173 1808 ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQE-IRLGDV 1879 (1935)
Q Consensus 1808 ----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d---lw~~ya~~e-~k~g~~ 1879 (1935)
.++.|...|++++...|... .+|..+|.++...|++++|...|++++...|...+ ++..|+.+. ...|+.
T Consensus 311 ~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEANDNLF--RVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTC--CCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHhhHHHHHHHHHHHhhcCCchh--hhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence 36788999999999998874 78999999999999999999999999999888654 466677654 467999
Q ss_pred HHHHHHHHHHHhcCCCch------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1880 DLIRGLFERAISLSLPPK------------------------KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1880 e~ar~lferal~~~~~pk------------------------~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
++|...|++++. +.|+ .+ ..|..........|+.+.|...|++|++.-
T Consensus 389 ~~Ai~~y~kal~--i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~-~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 389 DKAIHHFIEGVK--INQKSREKEKMKDKLQKIAKMRLSKNGADS-EALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHCC-CT-THHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999997 4332 22 245556666777899999999999999853
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-12 Score=151.11 Aligned_cols=215 Identities=13% Similarity=0.015 Sum_probs=182.8
Q ss_pred cHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1671 TPDEFERLVRS----SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1671 a~~~ferll~~----~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+...|++++.. +|++...|..++..+...|++++|...|++|++..|.. ..+|..++.++...| ..+.|
T Consensus 24 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~~--~~~~A 96 (275)
T 1xnf_A 24 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIYLTQAG--NFDAA 96 (275)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcc--CHHHH
Confidence 45566777765 35678999999999999999999999999999875532 358999999999999 55999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
...|++|++..|.. ..|..++.+|...|++++|.+.|+++++..|.....+..+. ..... ++++|...|++++...|
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCC
Confidence 99999999998864 99999999999999999999999999999998886555544 34555 99999999999999998
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~----~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~ 1898 (1935)
... ..| ..+.+++..++.++|...|++++...|.. ..+|..++.++...|+++.|...|++++. ..|..
T Consensus 176 ~~~--~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 176 KEQ--WGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp CCS--THH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred cch--HHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 874 333 47777788889999999999998776643 67899999999999999999999999998 56644
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=153.83 Aligned_cols=244 Identities=16% Similarity=0.114 Sum_probs=187.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR---EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC- 1757 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~---ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~- 1757 (1935)
+|+....|..++..+...|++++|..+|+++++..... .......+|..+..++...| ..+.|...|++|++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKDAANLLNDALAIRE 100 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999743211 12334578888889999999 5599999999999873
Q ss_pred -----CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1758 -----DP---KKVHLALLGLYERTEQNKLADELLYKMIKKF--------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1758 -----~~---~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~--------~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
+. ...|..++.+|...+++++|.+.|++++..+ +....+|..++.++... ++++|.++|++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 2889999999999999999999999999875 45577899999999999 9999999999999
Q ss_pred HhC------CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHH------HHHcCCH
Q 000173 1821 LSL------PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK---------RTDLWSIYLDQ------EIRLGDV 1879 (1935)
Q Consensus 1821 k~~------p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk---------~~dlw~~ya~~------e~k~g~~ 1879 (1935)
... .......+|..+|.+++..|++++|..+|++++...|. ...+|.....+ ....+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 872 11223578999999999999999999999999976433 22244443333 3345666
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1880 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1880 e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
..+...|++++. ..|..+ ..|..+.......|+.+.|...|++|++.-
T Consensus 261 ~~a~~~~~~~~~--~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 261 GEYGGWYKACKV--DSPTVT-TTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CCCC-----------CHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCC--CCchHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 677788888887 667766 678888888899999999999999999864
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-11 Score=145.23 Aligned_cols=222 Identities=12% Similarity=0.003 Sum_probs=188.9
Q ss_pred HcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCh
Q 000173 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQN 1776 (1935)
Q Consensus 1698 ~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~ 1776 (1935)
..+++++|...|+++++..+. .......+|..++..+...| ..+.|...|++|++..|. ...|..++.+|...+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLG--LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHhcccc-cCchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 446899999999999975321 22334678999999999999 559999999999999987 49999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1777 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1855 (1935)
Q Consensus 1777 ~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~a 1855 (1935)
++|.+.|++++...|....+|+.++..+... ++++|...|+++++..|... .+..+..+.+..|++++|...|+++
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP---FRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999998874 2233334446779999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1856 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK----MKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1856 l~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~----~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
+...|.+...|. .+.++...++.+.|...|++++. ..|.. . ..|..+.......|+.+.|...|++|++.
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADAT--DNTSLAEHLS-ETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC--SHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhc--cccccccccc-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999999877776 67777788889999999999987 44432 3 57888888888999999999999999853
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-15 Score=162.28 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=89.5
Q ss_pred CCCCEEEEEEEEEecCeEEEEE--CCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccCC
Q 000173 760 HPNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f--~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~~~ 837 (1935)
++|+++.|.|++|++||+||++ ++|+.||+|+|++++.++.++++.|++||.|.|+|+++|++++|+.||+|+...
T Consensus 14 ~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~-- 91 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSP-- 91 (182)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCH--
T ss_pred CCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCc--
Confidence 6899999999999999999999 689999999999999999999999999999999999999999999999998653
Q ss_pred CCchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEEEEEEEEeec-ceeEEEeccCCceeEEEeeee
Q 000173 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVVSFEEHSDVYGFITHHQ 908 (1935)
Q Consensus 838 ~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~~~~-~g~~v~~~~~~~v~g~i~~~~ 908 (1935)
+|| ......++.|+.++|+|..+.+ +| +.+++ ++.|++|.+.
T Consensus 92 ----------------------~p~---~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~--giegl~h~s~ 134 (182)
T 1kl9_A 92 ----------------------EEA---IKCEDKFTKSKTVYSILRHVAEVLE--YTKDE--QLESLFQRTA 134 (182)
T ss_dssp ----------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHTT--CCSHH--HHHHHHHHTH
T ss_pred ----------------------ChH---HHHHHhccCCCEEEEEEEEchhhcC--CcccC--ChhheEEeee
Confidence 111 1224568889999999999998 99 45553 5777776653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-11 Score=156.49 Aligned_cols=262 Identities=13% Similarity=0.086 Sum_probs=176.2
Q ss_pred cCCCCcHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchhhHHHHHHHHHH
Q 000173 1666 KDAPRTPDEFERLVRS---------SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENEKLNIWVAYFN 1733 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~---------~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~---~ee~Ekl~lW~ayl~ 1733 (1935)
++..+|...|++++.. +|.....|.+++..+..+|++++|...|+++++..+. ....+...++.....
T Consensus 65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence 4566777788887753 6888999999999999999999999999999964221 111122234443333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH---HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--
Q 000173 1734 LENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYE---RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-- 1807 (1935)
Q Consensus 1734 le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~---~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-- 1807 (1935)
....++....++|...|++|++..|.. ..|..++.++. ..++.++|.+.|+++++..|....+|..++..+...
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 224 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-
T ss_pred HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh
Confidence 333333212478999999999888764 66666665533 345666677777777777777777766666544432
Q ss_pred ---CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-----------------
Q 000173 1808 ---QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS----------------- 1867 (1935)
Q Consensus 1808 ---~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~----------------- 1867 (1935)
++++|.++|++++...|.. ..+|..+|.++...|++++|...|+++++..|++..+|.
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGV--TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence 5566777777777776655 466777777777777777777777777777776655544
Q ss_pred ------------------------------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-H
Q 000173 1868 ------------------------------------IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY-E 1910 (1935)
Q Consensus 1868 ------------------------------------~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~-E 1910 (1935)
.++.++...|++++|...|++++....++.....++..|..+ +
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 344455567888889999999888555544443456666655 3
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 000173 1911 KSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1911 ~~~G~~e~a~~v~~rAle~ 1929 (1935)
...|+.+.|...|++|++.
T Consensus 383 ~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHHhc
Confidence 4568888888888888865
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-12 Score=157.91 Aligned_cols=245 Identities=9% Similarity=-0.066 Sum_probs=200.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-----
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC----- 1757 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~----- 1757 (1935)
|.....|...+..+...|++++|+..|++|++..+. +......+|..+..++...| ..+.|...|++|++..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLG--DYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHccC
Confidence 344566778888899999999999999999986443 22223467888888889999 5599999999999873
Q ss_pred -CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHc-C-----------------HHH
Q 000173 1758 -DP-KKVHLALLGLYERTEQNKLADELLYKMIKKF------KHSCKVWLRRVQRLLKQ-Q-----------------QEG 1811 (1935)
Q Consensus 1758 -~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~------~~~~~vw~~~~~~l~~~-~-----------------~e~ 1811 (1935)
+. ..+|..++.+|...|++++|.+.|++++..+ +....+|..++..+... + +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 22 2889999999999999999999999999874 34566899999999998 8 999
Q ss_pred HHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHH
Q 000173 1812 VQAVVQRALLSLPRH----KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD------LWSIYLDQEIRLGDVDL 1881 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~----~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d------lw~~ya~~e~k~g~~e~ 1881 (1935)
|...|++++...+.. ....+|..+|.+++..|++++|...|++++...|...+ +|..++.++...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 999999998864321 22468999999999999999999999999998775433 78999999999999999
Q ss_pred HHHHHHHHHhcCCCch-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1882 IRGLFERAISLSLPPK-----KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1882 ar~lferal~~~~~pk-----~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
|..+|++++. ..+. ..-..|..+.......|+.+.|...+++|++....
T Consensus 282 A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 282 AAEHYKRTLA--LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999997 3222 11146777777888899999999999999987553
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.3e-13 Score=134.26 Aligned_cols=93 Identities=25% Similarity=0.403 Sum_probs=77.1
Q ss_pred EEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEE
Q 000173 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1523 (1935)
Q Consensus 1444 ~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~ 1523 (1935)
.-|+|+...+||... ..++++|++|.|+|+++.+||+||+|.+ ++.||||+|++++.++.++.+.|++||.|+|+
T Consensus 11 ~~~iKq~~~~p~~~~----~~~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~ 85 (109)
T 2khj_A 11 SSGLVPRGSHMFNNW----VALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAK 85 (109)
T ss_dssp ----------CHHHH----TTTCCSSSEEEEEEEEECSSCEEEECST-TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEE
T ss_pred ccchhhcccCHHHHH----hhcCCCCCEEEEEEEEEECCeEEEEECC-CCEEEEEHHHcCcccccChhhccCCCCEEEEE
Confidence 357888888887543 5789999999999999999999999976 79999999999999999999999999999999
Q ss_pred EEEEecCCCeeEEecccc
Q 000173 1524 ILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1524 Il~id~~~~ri~lslK~~ 1541 (1935)
|+++|+++++|.||+|+.
T Consensus 86 V~~vd~~~~ki~LS~k~~ 103 (109)
T 2khj_A 86 FTGVDRKNRAISLSVRAK 103 (109)
T ss_dssp EEEEETTTTEEEEETTSS
T ss_pred EEEEECCCCEEEEEEeec
Confidence 999999889999999984
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-11 Score=139.73 Aligned_cols=211 Identities=10% Similarity=0.026 Sum_probs=168.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1760 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1760 (1935)
.|.++..|...+..++..+++++|...|+++++..|... ..+|..+...+...| ..++|...|++|++..|..
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD----SVTAYNCGVCADNIK--KYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTCSHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHhh--cHHHHHHHHHHHHHhCcchH
Confidence 456779999999999999999999999999998765222 246777788888899 4599999999999999986
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-------KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFI 1832 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~-------~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~ 1832 (1935)
.+|..++.+|...+++++|.+.|+++++.+|.+. .+|..++..+... ++++|.+.|+++++..|...+..+|
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 9999999999999999999999999999999988 6699999999999 9999999999999998871126899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1908 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~ 1908 (1935)
..+|.+++.. ++.+++++....+.....+. .......+.+++|...|++++. +.|... ..+..+..
T Consensus 157 ~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~--l~p~~~-~~~~~l~~ 222 (228)
T 4i17_A 157 YSLGVLFYNN-----GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT--LSPNRT-EIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HCTTCH-HHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh--cCCCCH-HHHHHHHH
Confidence 9999988754 55666777777666644332 2233445668889999999888 666665 34444433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.1e-11 Score=142.08 Aligned_cols=204 Identities=9% Similarity=0.048 Sum_probs=174.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI-NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1760 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i-~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~ 1760 (1935)
+|.+...+..++.++...++.++|.+.+++++..- .+.. ..+|+.+..+....| ..+.|.+.|++ .+..
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~----~~~~~~la~~~~~~g--~~~~Al~~l~~----~~~~ 130 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN----TTFLLMAASIYFYDQ--NPDAALRTLHQ----GDSL 130 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC----HHHHHHHHHHHHHTT--CHHHHHHHHTT----CCSH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC----HHHHHHHHHHHHHCC--CHHHHHHHHhC----CCCH
Confidence 45566777888888999999999999999998642 2222 357888889999999 55999999998 3446
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR--RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1837 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~--~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~ 1837 (1935)
..|..++.+|.+.|++++|...|+++++..|+.....+. |..++... ++++|..+|++++...|.+ +.+|...|.
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~--~~~~~~la~ 208 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT--LLLLNGQAA 208 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc--HHHHHHHHH
Confidence 899999999999999999999999999998887644443 33545555 8999999999999999876 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCchhH
Q 000173 1838 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1838 le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~-ar~lferal~~~~~pk~~ 1899 (1935)
++.+.|++++|...|++++..+|.+.++|..++.++...|+.+. +..+|++++. ..|..+
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 99999999999999999999999999999999999999999865 7899999998 777776
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-11 Score=151.77 Aligned_cols=245 Identities=10% Similarity=-0.043 Sum_probs=201.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD---- 1758 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~---- 1758 (1935)
+.....|...+..+...|++++|...|+++++..|. .......+|..+...+...| ..+.|...|++|+....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhccc
Confidence 457788999999999999999999999999986443 22223468888889999999 55999999999987742
Q ss_pred C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-C--------------------
Q 000173 1759 P---KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-Q-------------------- 1808 (1935)
Q Consensus 1759 ~---~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~-~-------------------- 1808 (1935)
. ..+|..++.+|...|++++|...|++++..++.. ..+|..++..+... +
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 1 2789999999999999999999999999877532 55889999999988 8
Q ss_pred HHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCC
Q 000173 1809 QEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD------LWSIYLDQEIRLGD 1878 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d------lw~~ya~~e~k~g~ 1878 (1935)
+++|...|++++...+... ...+|..+|.+++..|++++|...|++++...|+..+ +|..++.++...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999999988643221 2468999999999999999999999999988765433 78999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchh-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1879 VDLIRGLFERAISLSLPPKK-----MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1879 ~e~ar~lferal~~~~~pk~-----~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
+++|..+|++++. ..+.. .-..|..+.......|+.+.|...+++|++....
T Consensus 243 ~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 243 FETASEYYKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 9999999999997 22221 1146777777888899999999999999987553
|
| >1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=99.37 E-value=6.5e-13 Score=127.25 Aligned_cols=77 Identities=25% Similarity=0.389 Sum_probs=71.6
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecC-ceeEEeecc-ccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVS-ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~-~v~Gl~h~s-els~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
+...++|+++.|+|+ +++||+||+|.+. +++||+|+| ++++.++.++++.| +||.|+++|+++|++++||+||+|+
T Consensus 6 y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~ 83 (88)
T 1luz_A 6 YSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKR 83 (88)
T ss_dssp SCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred ecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEee
Confidence 566799999999999 9999999999742 799999999 99999998899999 9999999999999999999999997
Q ss_pred c
Q 000173 1541 S 1541 (1935)
Q Consensus 1541 ~ 1541 (1935)
.
T Consensus 84 ~ 84 (88)
T 1luz_A 84 M 84 (88)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.7e-12 Score=160.25 Aligned_cols=211 Identities=9% Similarity=-0.084 Sum_probs=183.6
Q ss_pred CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHH
Q 000173 1701 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE-EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKL 1778 (1935)
Q Consensus 1701 e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~-e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~ 1778 (1935)
.+++|...++++....+ ....+|..+...+...+ .. ++|.+.|++|++..|.. ..|..++.+|...|++++
T Consensus 83 ~~~~al~~l~~~~~~~~-----~~a~~~~~lg~~~~~~g--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-----VEAQALMLKGKALNVTP--DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHTSSS--SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccCc-----hhHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 35666666666664333 23568999888888888 66 99999999999999874 999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc------
Q 000173 1779 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ----------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN------ 1842 (1935)
Q Consensus 1779 A~el~~~~~k~~~~~~~vw~~~~~~l~~~----------~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~------ 1842 (1935)
|.+.|++++...|+ ..+|..++..+... ++++|...|++|++..|.+ ..+|..+|.+++..
T Consensus 156 A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 156 AHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999988 79999999988762 6899999999999999987 58999999999998
Q ss_pred --CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000173 1843 --GVADRGRSMFEGILSEYP---KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1843 --g~~e~Ar~ife~al~~~P---k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e 1917 (1935)
|++++|...|+++++..| .+..+|..++.++...|++++|...|++++. +.|... ..|..+.......|+.+
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~-~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWP-EPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999 777776 57777777777788877
Q ss_pred HHHHHHH
Q 000173 1918 RIEYVKQ 1924 (1935)
Q Consensus 1918 ~a~~v~~ 1924 (1935)
++...+.
T Consensus 310 eAi~~~~ 316 (474)
T 4abn_A 310 SLLESKG 316 (474)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 7766543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-11 Score=164.44 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000173 1724 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1802 (1935)
Q Consensus 1724 kl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~ 1802 (1935)
....|..+.+++...| ..++|.+.|++|++..|.. ..|..++.+|.+.|++++|.+.|+++++..|+...+|++++.
T Consensus 8 ~a~al~nLG~~~~~~G--~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQG--NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3567888888899999 4599999999999998875 899999999999999999999999999999999999999999
Q ss_pred HHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 000173 1803 RLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1881 (1935)
Q Consensus 1803 ~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ 1881 (1935)
.+... ++++|.+.|++|++..|.+ ..+|..+|.++...|++++|...|+++++..|++.++|..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAF--ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999 9999999999999998877 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 000173 1882 IRGLFERAIS 1891 (1935)
Q Consensus 1882 ar~lferal~ 1891 (1935)
|...|+++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=147.45 Aligned_cols=243 Identities=9% Similarity=-0.050 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC------
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------ 1759 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~------ 1759 (1935)
...|...+..+...|++++|...|+++++..|. .......+|..+..++...| ..+.|...|++|++....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhcccccHH
Confidence 456788888999999999999999999986443 22223467888888889999 459999999999977421
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-C--------------------HHH
Q 000173 1760 -KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-Q--------------------QEG 1811 (1935)
Q Consensus 1760 -~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~-~--------------------~e~ 1811 (1935)
..+|..++.+|...|++++|.+.|++++...+.. ..+|..++..+... + +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 2789999999999999999999999999876433 44888999999888 8 999
Q ss_pred HHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 000173 1812 VQAVVQRALLSLPRH----KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------TDLWSIYLDQEIRLGDVDL 1881 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~----~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~------~dlw~~ya~~e~k~g~~e~ 1881 (1935)
|...|++++...+.. ....++..+|.+++..|++++|...|++++...|.. ..+|..++.++...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999998764321 124688999999999999999999999999876543 2378999999999999999
Q ss_pred HHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1882 IRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1882 ar~lferal~~----~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
|..+|++++.. ..++... ..|..+.......|+.+.|...+++|++....
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEA-QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 99999999972 1111113 46677777888899999999999999887553
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.2e-14 Score=151.39 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=88.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccc
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~--~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~ 1454 (1935)
++|+++.|+|++|+++|+||+|. ++++|+||+++|+|.++.++.+.|++||.|.++|+++|+++++|.||+|....+|
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~~ 93 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSED 93 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHHH
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcCh
Confidence 48999999999999999999994 7899999999999999999999999999999999999999999999999998887
Q ss_pred cccccccccCCCCCCcEEEeEEEEEe-eceE
Q 000173 1455 ASQSEINNLSNLHVGDIVIGQIKRVE-SYGL 1484 (1935)
Q Consensus 1455 ~~~~~~~~~~~~~~G~~v~G~V~~v~-~~G~ 1484 (1935)
|... ...+++|+++.|+|++++ +||+
T Consensus 94 ~~~~----~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 94 IIKC----EEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHH----HHhccCCCcceEEEEEchhhcCC
Confidence 7533 567899999999999998 7887
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-10 Score=135.29 Aligned_cols=212 Identities=12% Similarity=-0.051 Sum_probs=188.3
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH----
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE---- 1737 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~----~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~---- 1737 (1935)
++..+|...|++++. |++...|..++..+.. .+++++|...|++|++.-. ...|..+..++..
T Consensus 20 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 20 KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-------SNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHhCCCCc
Confidence 346678888999987 8889999999999999 9999999999999996521 4578888888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c-C
Q 000173 1738 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-Q 1808 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~----~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~----~-~ 1808 (1935)
.+ +.++|...|++|++.. ....|..++.+|.. .+++++|.+.|++++... ....|+.++..+.. . +
T Consensus 91 ~~--~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~ 165 (273)
T 1ouv_A 91 SQ--NTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD 165 (273)
T ss_dssp CC--CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred cc--CHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC
Confidence 88 5699999999999984 56899999999999 999999999999999864 78999999999998 7 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVD 1880 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~----~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e 1880 (1935)
+++|...|++++... ++..+..+|.++.. .+++++|...|+++++..| ...+..++.++.. .++++
T Consensus 166 ~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 166 LKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCST
T ss_pred HHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHH
Confidence 999999999999873 36899999999999 9999999999999999876 7889999999999 99999
Q ss_pred HHHHHHHHHHhcCCCchhH
Q 000173 1881 LIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk~~ 1899 (1935)
+|...|++++. ..|..+
T Consensus 240 ~A~~~~~~a~~--~~~~~a 256 (273)
T 1ouv_A 240 QAIENFKKGCK--LGAKGA 256 (273)
T ss_dssp THHHHHHHHHH--HTCHHH
T ss_pred HHHHHHHHHHH--cCCHHH
Confidence 99999999999 666555
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-12 Score=120.87 Aligned_cols=72 Identities=24% Similarity=0.461 Sum_probs=67.4
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
++++|+++.|+|+++.+||+||+|++ ++.||||+|++++.++ +.|++||.|+|+|+++|++++||.||+|+.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~ 73 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNE-QVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPL 73 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEET-TEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSC
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECC-CCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 57899999999999999999999987 7999999999998765 679999999999999999999999999985
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-11 Score=161.37 Aligned_cols=167 Identities=12% Similarity=0.023 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.+|.+.|++++|.+.|+++++..|+...+|++++..+.+. ++++|.+.|++|++..|.. ..+|..+|.++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999 9999999999999999987 69999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1919 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a 1919 (1935)
...|++++|...|+++++.+|++.++|+.++.++...|++++|...|++|+. +.|... ..|..+.......|+.++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~-~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFP-DAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCH-HHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHHhhhhhHHHhcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999 788887 6888888889999999999
Q ss_pred HHHHHHHHHHHHh
Q 000173 1920 EYVKQKAMEYVES 1932 (1935)
Q Consensus 1920 ~~v~~rAle~v~~ 1932 (1935)
.+.+++|++....
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 9999999998764
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-13 Score=148.37 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=83.0
Q ss_pred CCCEEEEEEEEEecCeEEEEE--CCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccCCC
Q 000173 761 PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838 (1935)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f--~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~~~~ 838 (1935)
+|+++.|.|++|++||+||++ ++|+.||+|+|++++.++.++++.|++||.|.|+|+++|++++|+.||+++...
T Consensus 15 ~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~--- 91 (175)
T 2a19_A 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSS--- 91 (175)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCH---
T ss_pred CCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCc---
Confidence 899999999999999999999 489999999999999999999999999999999999999999999999997753
Q ss_pred CchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEEEEEEEEee-ccee
Q 000173 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN-DFGV 890 (1935)
Q Consensus 839 d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~~~-~~g~ 890 (1935)
+|| ......+++|+.++|+|..+. ++|+
T Consensus 92 ---------------------~~~---~~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 92 ---------------------EDI---IKCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp ---------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------ChH---HHHHHhccCCCcceEEEEEchhhcCC
Confidence 111 123466788999999998888 6776
|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-13 Score=162.54 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=100.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~--~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
+++|+++.|+|++|+++|+||+|+ ++++|+||+++++|.++.++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~~ 90 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSPE 90 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCHH
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecccC
Confidence 569999999999999999999998 699999999999999999999999999999999999999999999999998877
Q ss_pred ccccccccccCCCCCCcEEEeEEEEEee-ceEEEE
Q 000173 1454 TASQSEINNLSNLHVGDIVIGQIKRVES-YGLFIT 1487 (1935)
Q Consensus 1454 ~~~~~~~~~~~~~~~G~~v~G~V~~v~~-~G~FV~ 1487 (1935)
||... ...+++|+++.|+|+++.+ ||+|+.
T Consensus 91 p~~~~----~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 91 EAIKC----EDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred hHHHH----HHHccCCCeeEEEEEEcccccCCccC
Confidence 76432 5688999999999999998 699975
|
| >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.5e-12 Score=127.39 Aligned_cols=95 Identities=25% Similarity=0.298 Sum_probs=77.0
Q ss_pred EEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCc-ccccCcccCccCCCEEEEEE
Q 000173 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-GQRADLSKTYYVGQSVRSNI 816 (1935)
Q Consensus 738 ~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~-~~~~~~~~~f~~Gq~V~~~V 816 (1935)
.-|+|+...++|..+. .++++|+++.|.|++++++|+||++.+++.||+|.|++++ .+..++.+.|++||.|+|+|
T Consensus 10 ~~~~k~~~~~p~~~~~---~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV 86 (115)
T 2khi_A 10 HSSGLVPRGSHWVAIA---KRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMV 86 (115)
T ss_dssp -----------CCCSS---CSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEE
T ss_pred ccchhhcccCCHHHHh---hcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEE
Confidence 4477888889988754 4588999999999999999999999999999999999997 47788899999999999999
Q ss_pred EEeeCCCCeEEEeeccccc
Q 000173 817 LDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 817 ~~vd~e~~rl~LSlk~~~~ 835 (1935)
+++|++++|+.||+++...
T Consensus 87 ~~vd~~~~rI~lslk~~~~ 105 (115)
T 2khi_A 87 LDIDEERRRISLGLKQCKA 105 (115)
T ss_dssp EEEETTTTEEEECCCCCCS
T ss_pred EEEECCCCEEEEEEEecCc
Confidence 9999999999999998754
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-12 Score=129.07 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=78.5
Q ss_pred EEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEE
Q 000173 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817 (1935)
Q Consensus 738 ~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~ 817 (1935)
.-|+|+...++|..+. .++++|+++.|.|++++++|+||++.+++.||+|.+++++.++.++.+.|++||.|.|+|+
T Consensus 11 ~~~iKq~~~~p~~~~~---~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~ 87 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWV---ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFT 87 (109)
T ss_dssp ----------CHHHHT---TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEE
T ss_pred ccchhhcccCHHHHHh---hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEE
Confidence 4578899999998754 4688999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCeEEEeecccc
Q 000173 818 DVNSETGRITLSLKQSC 834 (1935)
Q Consensus 818 ~vd~e~~rl~LSlk~~~ 834 (1935)
++|++++++.||+++..
T Consensus 88 ~vd~~~~ki~LS~k~~~ 104 (109)
T 2khj_A 88 GVDRKNRAISLSVRAKD 104 (109)
T ss_dssp EEETTTTEEEEETTSSS
T ss_pred EEECCCCEEEEEEeecC
Confidence 99999999999999764
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-12 Score=131.22 Aligned_cols=77 Identities=32% Similarity=0.702 Sum_probs=73.5
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.++++|++|.|+|++|++||+||.|.+ ++.||||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|+.
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~-~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~ 79 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDE-ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRAT 79 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEET-TEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECC-CcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeec
Confidence 478999999999999999999999986 79999999999999999999999999999999999999899999999985
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-10 Score=144.58 Aligned_cols=248 Identities=10% Similarity=-0.027 Sum_probs=196.6
Q ss_pred HcCCCCHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000173 1680 RSSPNSSFVWIK------YMAFMLSMADVEKARSIAERALQTINI-REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1752 (1935)
Q Consensus 1680 ~~~P~s~~lW~~------y~~~~l~~~e~dkAr~v~erAl~~i~~-~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vfer 1752 (1935)
...|.+...|+. .+.++...|++++|...|++|++.... .+..+...+|..+..++...| ..+.|...|++
T Consensus 91 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~--~~~~A~~~~~~ 168 (383)
T 3ulq_A 91 DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK--QTYFSMDYARQ 168 (383)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 344544454554 677788999999999999999975332 123345678888889999999 55999999999
Q ss_pred HHhcCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CHHHHHHHHH
Q 000173 1753 ALQYCDP--------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQ 1817 (1935)
Q Consensus 1753 Al~~~~~--------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~-~~e~A~~ll~ 1817 (1935)
|++..+. -..|..++.+|...|++++|.+.|++++..++.. ..+|.+++..+... ++++|...|+
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9987432 1688999999999999999999999999876433 35899999999999 9999999999
Q ss_pred HHHHhCC---C-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC---HHHHHHH
Q 000173 1818 RALLSLP---R-HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK-----RTDLWSIYLDQEIRLGD---VDLIRGL 1885 (1935)
Q Consensus 1818 ralk~~p---~-~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk-----~~dlw~~ya~~e~k~g~---~e~ar~l 1885 (1935)
+|+...+ . .....++..+|.+++..|++++|...|++++...+. ....+..++.++...|+ .++|..+
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999421 1 233689999999999999999999999999987532 23335667778888898 7788888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000173 1886 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1933 (1935)
Q Consensus 1886 feral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~ 1933 (1935)
|+++ ...+... .++.....+....|+.+.|...+++|++.-++.
T Consensus 329 ~~~~---~~~~~~~-~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 329 LESK---MLYADLE-DFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHT---TCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHC---cCHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 8875 2444444 577778888899999999999999999876653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.2e-11 Score=135.31 Aligned_cols=192 Identities=11% Similarity=0.034 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD--PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~--~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
..|..........|+ .++|...|++|++..| ....|..++.+|...+++++|.+.|+++++..|....+|+.++..
T Consensus 8 ~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKN--YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC--HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 478888888899994 5999999999999996 458888899999999999999999999999999999999999999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHI-----KFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIR 1875 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~-----~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~~dlw~~ya~~e~k 1875 (1935)
+... ++++|...|+++++..|.+... .+|...|.+++..|++++|...|+++++..|. +.+.|..++.++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999 9999999999999999987433 67999999999999999999999999999999 88999999999876
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1876 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
. ++.+++++.. +.+.... .+.. ..+...+.++.|...+++|++.
T Consensus 166 ~-----~~~~~~~a~~--~~~~~~~-~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 166 N-----GADVLRKATP--LASSNKE-KYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp H-----HHHHHHHHGG--GTTTCHH-HHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHh--cccCCHH-HHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 5 4556777776 3322221 2221 2234456688899999999875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-10 Score=126.59 Aligned_cols=163 Identities=13% Similarity=0.017 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
...|..++......| ..+.|...|+++++..|. ...|..++.+|...+++++|.+.|+++++..+....+|..++..
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAG--RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 456777777778888 458899999999888765 48888888899999999999999999998888888999999988
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+... ++++|.+.|++++...|.. ..+|..+|..++..|++++|..+|++++...|.+..+|..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPIN--FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHh--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 8888 9999999999999888766 578888899999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHh
Q 000173 1883 RGLFERAIS 1891 (1935)
Q Consensus 1883 r~lferal~ 1891 (1935)
...|++++.
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998887
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.1e-12 Score=129.91 Aligned_cols=110 Identities=29% Similarity=0.411 Sum_probs=99.3
Q ss_pred EeechhhhhcCCCcccccCCcEEEEEEEeeecceEEEEecCCcceecccCCCCCC-----CCCCcCCCCcEEEEEEEEEc
Q 000173 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSID 288 (1935)
Q Consensus 214 LS~~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~-----~~~~~l~~G~~~~~~v~~~~ 288 (1935)
+||+|+.+|+.++.+++.+|+++.|.|++|+|+|+.|++|..+..||++.++... ..+..+++||.+.|.|.+++
T Consensus 3 ~sl~P~~vn~~~~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 82 (119)
T 1wi5_A 3 SGSSGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVK 82 (119)
T ss_dssp CCCCCSCSSCCCCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECC
T ss_pred cccCHHHhhccccHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEe
Confidence 6899999999999999999999999999999999999999777889998876420 11237999999999999999
Q ss_pred CCCcEEEEccCccccccccccccccccccccCCCc
Q 000173 289 RTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323 (1935)
Q Consensus 289 ~~~~~v~ls~~~~~~~~~~~~~~~~~s~~~l~pG~ 323 (1935)
..++.+.||+.+..+.++.+++.+.+|+++|+||.
T Consensus 83 ~~~~~i~Lslk~~~l~~~~~~~~~~~~~~~l~p~~ 117 (119)
T 1wi5_A 83 GNGGVVSLSVGHSEVSTAIATEQQSWNLNNLSGPS 117 (119)
T ss_dssp TTSCEEEEECCCCCSCCCCCCSSCCCCCCCCCCCC
T ss_pred CCCCEEEEEEchhhcccceeeccCccChhhccCCC
Confidence 88899999999999999999998899999999995
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=126.98 Aligned_cols=166 Identities=15% Similarity=0.037 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.++...+++++|.+.|+++++..+....+|..++..+... ++++|...|+++++..|.. ..+|..+|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN--VKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999 9999999999999998876 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1919 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a 1919 (1935)
+..|++++|...|++++...|.+..+|..++.++...|++++|..+|++++. ..|... ..|..+.......|+.+.|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG--LRPNEG-KVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh--cCccch-HHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998 556666 5788888888899999999
Q ss_pred HHHHHHHHHHHH
Q 000173 1920 EYVKQKAMEYVE 1931 (1935)
Q Consensus 1920 ~~v~~rAle~v~ 1931 (1935)
...++++++.-.
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 999999988654
|
| >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=126.01 Aligned_cols=90 Identities=21% Similarity=0.336 Sum_probs=81.1
Q ss_pred cchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc-ccCCccccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000173 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1935)
Q Consensus 1368 ~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~-~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lS 1446 (1935)
++.....++++|+++.|+|++++++|+||+|+++++|+||++++++. ++.++.+.|++||.|+++|+++|.++++|.||
T Consensus 20 p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~ls 99 (115)
T 2khi_A 20 HWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLG 99 (115)
T ss_dssp -CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEEC
T ss_pred CHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEE
Confidence 34444567999999999999999999999999999999999999984 78889999999999999999999999999999
Q ss_pred EecCccccccc
Q 000173 1447 LKTSDSRTASQ 1457 (1935)
Q Consensus 1447 lk~~~~~~~~~ 1457 (1935)
+++...+||..
T Consensus 100 lk~~~~~p~~~ 110 (115)
T 2khi_A 100 LKQCKANPWQQ 110 (115)
T ss_dssp CCCCCSSCCCC
T ss_pred EEecCcCHHHH
Confidence 99998888743
|
| >2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.2e-12 Score=127.34 Aligned_cols=80 Identities=30% Similarity=0.404 Sum_probs=72.9
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCC--CeeEEeccc
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK--RRISLGMKS 1540 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~--~ri~lslK~ 1540 (1935)
...+++|++|.|+|++|.+||+||+|.+.+++||||+|++++.++.++.+.|++||.|+|+|+++|+++ ++|.||+|.
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 567899999999999999999999995434799999999999999999999999999999999999864 799999998
Q ss_pred cc
Q 000173 1541 SY 1542 (1935)
Q Consensus 1541 ~~ 1542 (1935)
..
T Consensus 97 ~~ 98 (119)
T 2cqo_A 97 VN 98 (119)
T ss_dssp BC
T ss_pred cc
Confidence 64
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=135.57 Aligned_cols=178 Identities=9% Similarity=0.017 Sum_probs=122.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000173 1681 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1759 (1935)
Q Consensus 1681 ~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~- 1759 (1935)
.+|++...|...+..++..|++++|...|+++++..|... .....|..+...+...|+ .+.|...|+++++..|.
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~a~~~lg~~~~~~~~--~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE--WAADAQFYLARAYYQNKE--YLLAASEYERFIQIYQID 85 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST--THHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHCCCC
Confidence 4688999999999999999999999999999998766432 113577778888888894 59999999999998763
Q ss_pred ---HHHHHHHHHHHHH--------cCChHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHc-CHH
Q 000173 1760 ---KKVHLALLGLYER--------TEQNKLADELLYKMIKKFKHSCKVW-----------------LRRVQRLLKQ-QQE 1810 (1935)
Q Consensus 1760 ---~~v~~~l~~i~~~--------~~~~~~A~el~~~~~k~~~~~~~vw-----------------~~~~~~l~~~-~~e 1810 (1935)
...|+.++.+|.. .+++++|...|+++++.+|++...| +.++.++... +++
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 165 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE 165 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 2788889999988 8999999999999999998877666 3334444444 444
Q ss_pred HHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCC
Q 000173 1811 GVQAVVQRALLSLPRHK-HIKFISQTAILEFKN----------GVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1811 ~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~----------g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
+|...|+++++..|... ...+|..+|..++.. |++++|...|+++++.+|++
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 44444444444444332 123444444444433 44444444444444444444
|
| >2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=121.78 Aligned_cols=78 Identities=33% Similarity=0.583 Sum_probs=70.9
Q ss_pred ccCCCCCCcEEEeEEEEEeeceEEEEEecC--ceeEEeecccc-CcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENT--NLVGLCHVSEL-SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1462 ~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~--~v~Gl~h~sel-s~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
...++++|+++.|+|++|.+||+||+|.+. +++||||+|++ ++.++.++.+.|++||.|+|+|+++|+ +||.||+
T Consensus 6 ~~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSl 83 (103)
T 2eqs_A 6 SGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSM 83 (103)
T ss_dssp CCSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEES
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEE
Confidence 356789999999999999999999999742 79999999999 777888899999999999999999996 6999999
Q ss_pred ccc
Q 000173 1539 KSS 1541 (1935)
Q Consensus 1539 K~~ 1541 (1935)
|..
T Consensus 84 k~~ 86 (103)
T 2eqs_A 84 KDV 86 (103)
T ss_dssp TTB
T ss_pred eec
Confidence 984
|
| >1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=99.23 E-value=9.5e-12 Score=119.20 Aligned_cols=78 Identities=18% Similarity=0.318 Sum_probs=71.8
Q ss_pred cccccCCCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCC-ccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 755 DASHIHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRS-KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 755 ~~~~~~~G~~~~G~V~~i~~~G~fV~f~--~gl~Glv~~s-~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
.|...++|+.+.|+|+ |++||+||++. +++.||+|+| ++++++..++++.| +||.|+|+|+++|++++|+.||+|
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk 82 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYK 82 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEe
Confidence 3556688999999999 99999999997 4899999999 99999988999999 999999999999999999999999
Q ss_pred ccc
Q 000173 832 QSC 834 (1935)
Q Consensus 832 ~~~ 834 (1935)
...
T Consensus 83 ~~~ 85 (88)
T 1luz_A 83 RMC 85 (88)
T ss_dssp EEC
T ss_pred ecC
Confidence 764
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-11 Score=125.46 Aligned_cols=82 Identities=17% Similarity=0.410 Sum_probs=77.3
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++++|+++.|+|++|+++|+||+|+.+++|+||+++++|.|+.++.+.|++||.|.|+|+++|+++++|.||++....+
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~~ 82 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAA 82 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHHHS
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecccC
Confidence 35889999999999999999999998899999999999999999999999999999999999999899999999998766
Q ss_pred cc
Q 000173 1454 TA 1455 (1935)
Q Consensus 1454 ~~ 1455 (1935)
|+
T Consensus 83 p~ 84 (130)
T 2k4k_A 83 PE 84 (130)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-10 Score=134.31 Aligned_cols=223 Identities=11% Similarity=0.015 Sum_probs=159.6
Q ss_pred CCCCcHHHHHHHHH--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHH
Q 000173 1667 DAPRTPDEFERLVR--------SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENEKLNIWVAYFNLE 1735 (1935)
Q Consensus 1667 ~~~~a~~~ferll~--------~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~---~ee~Ekl~lW~ayl~le 1735 (1935)
+.++|...|++++. .+|.....|..++..+...+++++|...|++|++.... ........+|..+..++
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 35555556665554 34677899999999999999999999999999975310 01123356788888888
Q ss_pred HHcCCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------cCCCHHHHH
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYC--------DP-KKVHLALLGLYERTEQNKLADELLYKMIKK--------FKHSCKVWL 1798 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~--------~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~--------~~~~~~vw~ 1798 (1935)
...| ..+.|...|++|++.. +. ...|..++.+|...|++++|.+.|+++++. .+....+|.
T Consensus 96 ~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 96 GKRG--KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHhc--cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 8888 4599999999999873 22 288888999999999999999999999887 444567788
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCC-------CChHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHH
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPR-------HKHIKFISQTAILEFKNGV------ADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~-------~~~~~~~~~~a~le~~~g~------~e~Ar~ife~al~~~Pk~~d 1864 (1935)
.++..+... ++++|..+|+++++..+. .....+|...+.++...+. +..+...++.+....|....
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 888888888 889999999888876221 1112567777766665443 33444444444334455566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1865 LWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1865 lw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+|..++.++...|++++|..+|++++.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888888888888888886
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.6e-11 Score=112.33 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=67.8
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
++++|+.+.|.|++++++|+||++.+++.||+|.|++++.++ +.|++||.|+|+|+++|++++|+.||+++...
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 367899999999999999999999999999999999998765 67999999999999999999999999997643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=155.31 Aligned_cols=185 Identities=6% Similarity=-0.091 Sum_probs=163.0
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000173 1681 SSPNSSFVWIKYMAFMLSMADVEKARSIAERAL--------QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1752 (1935)
Q Consensus 1681 ~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl--------~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vfer 1752 (1935)
.+|++...+...+ +..+++++|.+.|++|+ +..|.. ..+|..+...+...| ..++|...|++
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~g--~~~~A~~~~~~ 458 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSES-----VELPLMEVRALLDLG--DVAKATRKLDD 458 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTC-----SHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccc-----hhHHHHHHHHHHhcC--CHHHHHHHHHH
Confidence 4677776666544 78899999999999999 443422 358999999999999 45999999999
Q ss_pred HHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1753 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1753 Al~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
|++..|.. ..|+.++.+|...+++++|.+.|+++++..|++...|++++..+... ++++ .+.|++|++..|.+ ..
T Consensus 459 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~--~~ 535 (681)
T 2pzi_A 459 LAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV--IS 535 (681)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--HH
T ss_pred HhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch--HH
Confidence 99998875 99999999999999999999999999999999999999999999999 9999 99999999999987 58
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1878 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~ 1878 (1935)
+|..+|.++.+.|++++|...|+++++.+|.+..+|..++..++..+.
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999877665
|
| >3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-12 Score=150.40 Aligned_cols=108 Identities=16% Similarity=0.264 Sum_probs=98.4
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~--~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++|+++.|+|+++.++|+||+|+ ++++|+||+++++|.++.++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~~ 88 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQ 88 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCcc
Confidence 458999999999999999999998 689999999999999999999999999999999999999999999999998877
Q ss_pred ccccccccccCCCCCCcEEEeEEEEEe-eceEEEE
Q 000173 1454 TASQSEINNLSNLHVGDIVIGQIKRVE-SYGLFIT 1487 (1935)
Q Consensus 1454 ~~~~~~~~~~~~~~~G~~v~G~V~~v~-~~G~FV~ 1487 (1935)
+|... ...++.|+.+.|.|+++. +||++++
T Consensus 89 ~~~~~----~~~~~~g~~v~g~v~~v~~~~G~~~e 119 (275)
T 3aev_A 89 QRKAK----LQEFKRAQKAENLLRLAAEKLGKDFE 119 (275)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred hhHHH----HHhccCCCeEEEEEEEchhhcCCCHH
Confidence 76432 567899999999999999 8998543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-10 Score=154.03 Aligned_cols=167 Identities=8% Similarity=-0.070 Sum_probs=152.0
Q ss_pred HHcCCCCHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000173 1736 NEYGNPPEEAVVKVFQRAL--------QYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1806 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl--------~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~ 1806 (1935)
...+ ..++|.+.|++|+ +..|.. ..|+.++.+|.+.|++++|.+.|+++++..|++..+|+.++..+..
T Consensus 402 ~~~~--~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLS--QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTC--CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cccc--CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 5567 5599999999999 777765 9999999999999999999999999999999999999999999999
Q ss_pred c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1807 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1885 (1935)
Q Consensus 1807 ~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~l 1885 (1935)
. ++++|...|++|++..|.+. .+|..+|.++++.|++++ ...|+++++.+|.+..+|+.++.++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGEL--APKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9 99999999999999999884 899999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1886 FERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1886 feral~~~~~pk~~k~l~~~yl~~E 1910 (1935)
|++|+. +.|... ..|.......
T Consensus 557 ~~~al~--l~P~~~-~a~~~~~~~~ 578 (681)
T 2pzi_A 557 LDEVPP--TSRHFT-TARLTSAVTL 578 (681)
T ss_dssp HHTSCT--TSTTHH-HHHHHHHHHT
T ss_pred HHhhcc--cCcccH-HHHHHHHHHH
Confidence 999998 788776 3554444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.2e-11 Score=142.25 Aligned_cols=225 Identities=12% Similarity=0.042 Sum_probs=170.9
Q ss_pred ccCCCCcHHHHHHHHH--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchhhHHHHHHHHHH
Q 000173 1665 EKDAPRTPDEFERLVR--------SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENEKLNIWVAYFN 1733 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~--------~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~---~ee~Ekl~lW~ayl~ 1733 (1935)
.++..+|...|++++. .+|.....|..++..+...+++++|...|++++..... ........+|..+..
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3456778888888887 46778899999999999999999999999999975311 011233567888888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcC------C-C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------cCCCHHH
Q 000173 1734 LENEYGNPPEEAVVKVFQRALQYC------D-P--KKVHLALLGLYERTEQNKLADELLYKMIKK--------FKHSCKV 1796 (1935)
Q Consensus 1734 le~~~g~~~~e~a~~vferAl~~~------~-~--~~v~~~l~~i~~~~~~~~~A~el~~~~~k~--------~~~~~~v 1796 (1935)
++...| ..+.|...|+++++.. + . ..+|..++.+|...+++++|.+.|++++.. .+....+
T Consensus 120 ~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (311)
T 3nf1_A 120 LYGKRG--KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197 (311)
T ss_dssp HHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred HHHHcC--cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 888999 5599999999999874 2 1 288999999999999999999999999987 4455778
Q ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHhCCC---------CC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1797 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPR---------HK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1797 w~~~~~~l~~~-~~e~A~~ll~ralk~~p~---------~~----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
|..++.++... ++++|...|++++...+. .. +...+...+..+...+.+.+|...|+.++...|..
T Consensus 198 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 277 (311)
T 3nf1_A 198 KNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV 277 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH
Confidence 99999999999 999999999999986432 11 12333333344445667777888999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1863 TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1863 ~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..+|..++.++.+.|++++|..+|++++.
T Consensus 278 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 278 TTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999997
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-09 Score=133.11 Aligned_cols=239 Identities=11% Similarity=0.021 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC------
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------ 1759 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~-~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~------ 1759 (1935)
..|...+.++...|++++|...|++|++.... .++.+...+|..+..++...| ..+.|...|++|++..+.
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--QTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhCCCchh
Confidence 35666777888999999999999999975432 223445678888888889999 559999999999986431
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH-----hCCC
Q 000173 1760 --KKVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL-----SLPR 1825 (1935)
Q Consensus 1760 --~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk-----~~p~ 1825 (1935)
-..|..++.+|...+++++|.+.|++++...+ ....++.+++..+... ++++|...|++|+. ..|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 16788999999999999999999999998653 1346788999999999 99999999999999 4443
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCch
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK-----RTDLWSIYLDQEIRLGD---VDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk-----~~dlw~~ya~~e~k~g~---~e~ar~lferal~~~~~pk 1897 (1935)
. ..++..+|.++++.|++++|...|++++...+. ....+..+..++...++ ..+|..+|++. ...+.
T Consensus 260 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~ 334 (378)
T 3q15_A 260 L--PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAY 334 (378)
T ss_dssp H--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHH
T ss_pred H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhH
Confidence 3 689999999999999999999999999998654 23345556666667777 77788888771 24444
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000173 1898 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1933 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~ 1933 (1935)
.. .++.....+....|+.+.|...|++|++.-++.
T Consensus 335 ~~-~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 335 IE-ACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 44 577788888889999999999999999887654
|
| >2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-11 Score=122.93 Aligned_cols=90 Identities=21% Similarity=0.223 Sum_probs=79.3
Q ss_pred chhhhccCCCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCC--CEEEE
Q 000173 1369 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--KRVEV 1445 (1935)
Q Consensus 1369 ~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~-~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~--~ri~l 1445 (1935)
+......+++|+++.|+|++|+++|+||+|+. +.+|+||+++++|.++.++.+.|++||.|.++|+++|+++ ++|.|
T Consensus 13 ~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~L 92 (119)
T 2cqo_A 13 PETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 92 (119)
T ss_dssp CCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEE
T ss_pred hhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEE
Confidence 33344678999999999999999999999964 4799999999999999999999999999999999999864 69999
Q ss_pred EEecCcccccccc
Q 000173 1446 TLKTSDSRTASQS 1458 (1935)
Q Consensus 1446 Slk~~~~~~~~~~ 1458 (1935)
|+|....++|.+.
T Consensus 93 Slk~~~~~~~~~~ 105 (119)
T 2cqo_A 93 SMKVVNQGTGKDL 105 (119)
T ss_dssp ESTTBCSSSCCBS
T ss_pred EEeecccCCcccc
Confidence 9999888877543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.5e-11 Score=127.44 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
.++|...|++|+...|.. ..|+.++.+|.+.+++++|.+.|+++++..|.++.+|..++.++... ++++|...|++++
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 355666666665555443 45566666666666666666666666666666666666666666666 6666666666666
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRG-RSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~A-r~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
+..|.+ +.+|..+|.++++.|+.++| +..++++++.+|++..+|.....++...|
T Consensus 93 ~~~p~~--~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 93 ELNPTQ--KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHCTTC--HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 666655 45666666666666665443 33346666666666666666666555554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.6e-09 Score=128.43 Aligned_cols=266 Identities=10% Similarity=0.005 Sum_probs=200.2
Q ss_pred hccCCCCcHHHHHHHHHcCCCCH-H----HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHHH
Q 000173 1664 LEKDAPRTPDEFERLVRSSPNSS-F----VWIKYMAFMLSMADVEKARSIAERALQTINIREEN-EKLNIWVAYFNLENE 1737 (1935)
Q Consensus 1664 ~~~~~~~a~~~ferll~~~P~s~-~----lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~-Ekl~lW~ayl~le~~ 1737 (1935)
..++.+++...|++++...|.+. . .+..++..+...|++++|+..+++|+...+...+. .....+..+..++..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 35667888999999998777542 2 45666777889999999999999999754422111 112334566677788
Q ss_pred cCCCCHHHHHHHHHHHHhcCC-------C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHH
Q 000173 1738 YGNPPEEAVVKVFQRALQYCD-------P--KKVHLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVWLRRVQR 1803 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~-------~--~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~-----~~~vw~~~~~~ 1803 (1935)
.| ..+.|...|+++++..+ + ...|..++.+|...|++++|...|++++...+. ....|..++..
T Consensus 106 ~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 106 QG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp TT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 89 55999999999998652 2 267778899999999999999999999988753 34678889998
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS-----QTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQE 1873 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~-----~~a~le~~~g~~e~Ar~ife~al~~~Pk~----~dlw~~ya~~e 1873 (1935)
+... ++++|...|++++...+.......|. ..+.++...|++++|+..|++++...|.. ...|..++.++
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 9888 99999999999998754432112232 23445779999999999999999876643 33678889999
Q ss_pred HHcCCHHHHHHHHHHHHhcC--CC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1874 IRLGDVDLIRGLFERAISLS--LP-PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1874 ~k~g~~e~ar~lferal~~~--~~-pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
...|++++|..+|++++... .. +...-..+..........|+.+.|...+++|++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998621 11 111112455555667788999999999999998765
|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=4e-12 Score=149.13 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=94.4
Q ss_pred cCCCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccC
Q 000173 759 IHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836 (1935)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G~fV~f~--~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~~ 836 (1935)
.++|+++.|+|++|++||+||++. +++.||+|.|+++|.++.++.+.|++||.|.|+|+++|++++|+.||+|+...
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~- 89 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSP- 89 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCH-
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEeccc-
Confidence 358999999999999999999998 79999999999999999999999999999999999999999999999998643
Q ss_pred CCCchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEEEEEEEEeec-ceeEE
Q 000173 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVV 892 (1935)
Q Consensus 837 ~~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~~~~-~g~~v 892 (1935)
+|| ..+...+++|+.++|+|..+.+ +|+++
T Consensus 90 -----------------------~p~---~~~~~~~~~G~~v~G~V~~v~~~~G~fi 120 (308)
T 1q8k_A 90 -----------------------EEA---IKCEDKFTKSKTVYSILRHVAEVLEYTK 120 (308)
T ss_dssp -----------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred -----------------------ChH---HHHHHHccCCCeeEEEEEEcccccCCcc
Confidence 111 2235678899999999999998 59864
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-10 Score=131.54 Aligned_cols=227 Identities=14% Similarity=0.115 Sum_probs=175.0
Q ss_pred HcCCHHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------CC---HHHHHH
Q 000173 1698 SMADVEKARSIAERALQTINIR---EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------DP---KKVHLA 1765 (1935)
Q Consensus 1698 ~~~e~dkAr~v~erAl~~i~~~---ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~------~~---~~v~~~ 1765 (1935)
..+++++|...|++|++..... .......+|..+..++...| ..+.|...|++|++.. +. ..+|..
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 4578889999999999743210 12334678889999999999 4599999999999873 22 288999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC-----C-CCChHH
Q 000173 1766 LLGLYERTEQNKLADELLYKMIKKF--------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL-----P-RHKHIK 1830 (1935)
Q Consensus 1766 l~~i~~~~~~~~~A~el~~~~~k~~--------~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~-----p-~~~~~~ 1830 (1935)
++.+|...+++++|.+.|++++..+ +....+|..++..+... ++++|..+|++++... + ......
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999999874 45678899999999999 9999999999999981 1 112357
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhcCCC
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSE---------YPKRTDLWSIYLDQEIRLGDVD------LIRGLFERAISLSLP 1895 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~---------~Pk~~dlw~~ya~~e~k~g~~e------~ar~lferal~~~~~ 1895 (1935)
++..+|.+++..|++++|...|++++.. .+....+|......+...+... .+...++.+.. ..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 248 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DS 248 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CC
Confidence 8999999999999999999999999987 4455567888777776544433 33333333222 34
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1896 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1896 pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
|... ..|..+..+....|+.+.|...+++|++.
T Consensus 249 ~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVN-TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555 57778888889999999999999999863
|
| >2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.5e-11 Score=116.27 Aligned_cols=82 Identities=26% Similarity=0.411 Sum_probs=74.9
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCC---CcEEEEECccC-CCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSR---KLDAKVLLSNL-SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~~---~v~g~V~~s~l-sd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
.++++|+++.|+|++|.++|+||+|+. +++|+||++++ +|.++.++.+.|++||.|.++|+++|+ ++|.||+|.
T Consensus 8 ~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSlk~ 85 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSMKD 85 (103)
T ss_dssp SSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEESTT
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEEee
Confidence 468899999999999999999999996 89999999999 677888999999999999999999996 699999999
Q ss_pred Cccccccc
Q 000173 1450 SDSRTASQ 1457 (1935)
Q Consensus 1450 ~~~~~~~~ 1457 (1935)
...+||.+
T Consensus 86 ~~~~~~~~ 93 (103)
T 2eqs_A 86 VDQETGED 93 (103)
T ss_dssp BCTTTCCB
T ss_pred cccCCchh
Confidence 88877643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=125.01 Aligned_cols=145 Identities=12% Similarity=-0.010 Sum_probs=128.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000173 1766 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1844 (1935)
Q Consensus 1766 l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~ 1844 (1935)
|+.++...+++++|.+.|++++...|..+..|+.++..+++. ++++|.+.|+++++..|.+ +.+|..+|.+++..|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--PKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCc
Confidence 566777788999999999999988888899999999999999 9999999999999999987 6999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000173 1845 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1915 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~-ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~ 1915 (1935)
+++|...|+++++.+|++.++|..++.++.+.|+.+. ++..+++|+. +.|++. .+|.....+....|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~-~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSP-AVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCH-HHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999875 5556799999 888887 678877777777775
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=6.7e-10 Score=133.00 Aligned_cols=170 Identities=12% Similarity=0.072 Sum_probs=96.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHHHH
Q 000173 1693 MAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKVHL 1764 (1935)
Q Consensus 1693 ~~~~l~~~e~dkAr~v~erAl~~i~~~-ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~v~~ 1764 (1935)
+..+...|++++|...|++|+...+.. +.......|..+..++...| ..++|...|++|++..+. -..|.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--NSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444556666677777666666532111 01112345666666666666 336666666666665432 14566
Q ss_pred HHHHHHHHc-CChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH-----HH
Q 000173 1765 ALLGLYERT-EQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-----KF 1831 (1935)
Q Consensus 1765 ~l~~i~~~~-~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~-----~~ 1831 (1935)
.++.+|... +++++|.+.|++++..++.. ..+|..++.++... ++++|...|++++...|..... .+
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 666666664 66666666666666665422 34566666666666 6666666666666666554321 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1832 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1832 ~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
|...+.++...|++++|+..|++++..+|...+
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 566666666666666666666666666665443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=131.13 Aligned_cols=203 Identities=10% Similarity=0.012 Sum_probs=161.1
Q ss_pred CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC----CC---HHHHHHHHHHHHHc
Q 000173 1701 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC----DP---KKVHLALLGLYERT 1773 (1935)
Q Consensus 1701 e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~----~~---~~v~~~l~~i~~~~ 1773 (1935)
++++|...|++|. +++...|++ +.|...|++|++.. +. -..|..++.+|...
T Consensus 32 ~~~~A~~~~~~a~-------------------~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~ 90 (292)
T 1qqe_A 32 KFEEAADLCVQAA-------------------TIYRLRKEL--NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG 90 (292)
T ss_dssp HHHHHHHHHHHHH-------------------HHHHHTTCT--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHH-------------------HHHHHcCCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC
Confidence 4899999999885 234567865 99999999999874 22 27899999999999
Q ss_pred CChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHH-c-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHH
Q 000173 1774 EQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLK-Q-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFK 1841 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~-~-~~e~A~~ll~ralk~~p~~~~----~~~~~~~a~le~~ 1841 (1935)
|++++|.+.|++++..++.. ...|.+++..+.. . ++++|...|++|+...|...+ ..+|..+|.++..
T Consensus 91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999987532 5689999999998 5 999999999999998875422 3678999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH----HHHHHHHHHH
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTD-------LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK----FLFKKYLEYE 1910 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~d-------lw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k----~l~~~yl~~E 1910 (1935)
.|++++|...|++++...|.... .|..++..+...|+++.|+..|++++. +.|.... .++...+...
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~ 248 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAV 248 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999887543 578888899999999999999999998 5443221 1333333333
Q ss_pred H--HcCCHHHHHHHHHHH
Q 000173 1911 K--SVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1911 ~--~~G~~e~a~~v~~rA 1926 (1935)
. ..+.++.+...|+++
T Consensus 249 ~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 249 NEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HTTCTTTHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHhccC
Confidence 2 345688888777665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.3e-09 Score=124.49 Aligned_cols=228 Identities=9% Similarity=0.021 Sum_probs=196.8
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH----HHc---
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA--DVEKARSIAERALQTINIREENEKLNIWVAYFNLE----NEY--- 1738 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~--e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le----~~~--- 1738 (1935)
.+++...++++|..+|++..+|..-.......+ .++++...+++++...|-. ..+|.....+. ...
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-----y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-----YQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-----CHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-----HHHHHHHHHHHHHHHHhcccc
Confidence 677889999999999999999999999999999 9999999999999765533 35898766665 455
Q ss_pred CCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C------
Q 000173 1739 GNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNK--LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------ 1808 (1935)
Q Consensus 1739 g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~--~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~------ 1808 (1935)
+ ..+.+.+.++++++.+|.+ .+|....-++.+.+.++ ++.+.+.+++...+.+..+|...+..+... .
T Consensus 124 ~--~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 F--DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp C--CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence 5 3488899999999999864 99999999999999988 999999999999999999999988777665 5
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSMFEGILSEY---PKRTDLWSIYLDQEIRLGDVDLIRG 1884 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~-~e~Ar~ife~al~~~---Pk~~dlw~~ya~~e~k~g~~e~ar~ 1884 (1935)
++++.+.+.+++...|.+. .+|.....++.+.|. .+.....+++++... |.+..+|.-+++.+.+.|+.++|..
T Consensus 202 ~~eEl~~~~~aI~~~p~n~--SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNP--STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 8999999999999999884 899999999988887 445667777777665 8899999999999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHH
Q 000173 1885 LFERAISLSLPPKKMKFLFKKY 1906 (1935)
Q Consensus 1885 lferal~~~~~pk~~k~l~~~y 1906 (1935)
+|+++.. +..|-+. .+|.--
T Consensus 280 ~~~~l~~-~~Dpir~-~yW~~~ 299 (306)
T 3dra_A 280 VYDLLKS-KYNPIRS-NFWDYQ 299 (306)
T ss_dssp HHHHHHH-TTCGGGH-HHHHHH
T ss_pred HHHHHHh-ccChHHH-HHHHHH
Confidence 9999986 5778777 577643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.4e-10 Score=126.05 Aligned_cols=179 Identities=9% Similarity=0.022 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1764 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~ 1764 (1935)
+...|+..+..+++.|++++|...|+++++..|.. ...|.. ...... .+. ...++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~-----~~~~~~-~~~-------------~~~~~~ 58 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-----TEMYYW-----TNVDKN-SEI-------------SSKLAT 58 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-----HHHHHH-----HHSCTT-SHH-------------HHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----hHHHHH-----hhhcch-hhh-------------hHHHHH
Confidence 56778888889999999999999999999765521 223433 011110 010 013445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000173 1765 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1843 (1935)
Q Consensus 1765 ~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g 1843 (1935)
.++.+|.+.|++++|...|+++++..|.+..+|+.++..+... ++++|...|+++++..|.+ ..+|..+|.+++..|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN--LAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHh
Confidence 5667777777777777777777777777777777777777777 7777777777777777665 467777777666554
Q ss_pred C--HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1844 V--ADRGRSMFEGILSEYPKRT-DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1844 ~--~e~Ar~ife~al~~~Pk~~-dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+ .+.+...|.+++. |... ..|...+..+...|++++|+..|++++.
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3 3445555555542 2222 2455555555666777777777777776
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.3e-09 Score=124.30 Aligned_cols=169 Identities=15% Similarity=0.168 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWL 1798 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~----~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~ 1798 (1935)
..|..........|+ .+.|...|+++++..|. ...|+.++.+|.+.+++++|.+.|+++++.+|.+ ..+|+
T Consensus 16 ~~~~~~a~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQGK--YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 467777777788894 59999999999999875 4899999999999999999999999999998744 67899
Q ss_pred HHHHHHHH--------c-CHHHHHHHHHHHHHhCCCCChH-HHH--------------HHHHHHHHHcCCHHHHHHHHHH
Q 000173 1799 RRVQRLLK--------Q-QQEGVQAVVQRALLSLPRHKHI-KFI--------------SQTAILEFKNGVADRGRSMFEG 1854 (1935)
Q Consensus 1799 ~~~~~l~~--------~-~~e~A~~ll~ralk~~p~~~~~-~~~--------------~~~a~le~~~g~~e~Ar~ife~ 1854 (1935)
.++..++. . ++++|...|++++...|.+... .++ ...|.+++..|++++|...|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999 8 9999999999999999987532 222 7889999999999999999999
Q ss_pred HHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCchh
Q 000173 1855 ILSEYPK---RTDLWSIYLDQEIRL----------GDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1855 al~~~Pk---~~dlw~~ya~~e~k~----------g~~e~ar~lferal~~~~~pk~ 1898 (1935)
++..+|+ ..++|..++..+... |++++|...|++++. ..|..
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 9999998 456888888888876 888999999999998 44443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-08 Score=125.06 Aligned_cols=243 Identities=12% Similarity=0.016 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH------
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK------ 1760 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~------ 1760 (1935)
.++...+..+...|++++|+..+++++...+.........++..+..++...| ..+.|...|++|+...+..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34455666778899999999999999987764332233445666677778889 5599999999999865321
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC---
Q 000173 1761 -KVHLALLGLYERTEQNKLADELLYKMIKKFK--------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--- 1827 (1935)
Q Consensus 1761 -~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~--------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~--- 1827 (1935)
..+..++.+|...|++++|.+.|++++...+ .....+..++..+... ++++|...|++++...+...
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 4467788899999999999999999998762 2345677788888888 99999999999999887642
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcCCCc-hhH
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSI-----YLDQEIRLGDVDLIRGLFERAISLSLPP-KKM 1899 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~~dlw~~-----ya~~e~k~g~~e~ar~lferal~~~~~p-k~~ 1899 (1935)
....+..+|.++...|++++|+..|++++...+. ....|.. .+.++...|+++.|+.++++++.....+ ...
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 2467889999999999999999999999987433 2123432 3345678999999999999998732111 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
...|..+.......|+.+.+...++++++...
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 12456666778889999999999999987654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-09 Score=129.97 Aligned_cols=180 Identities=12% Similarity=0.042 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
.+.....+.+.+ |.. ..++.++..+.+.|++++|.+.|++++...|++..+|+.++..++.. ++++|...|++++
T Consensus 102 ~~~l~~~l~~~l---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 102 EEAIRALLDXVL---PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHS---CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHc---CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 344444444443 443 77888888888999999999999999999999999999999988888 9999999999998
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK-- 1898 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~-- 1898 (1935)
...|.. ...+...+..+...++.+.|...|++++..+|.+.++|+.++.++...|+++.|...|++++. ..|..
T Consensus 179 ~~~p~~--~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~--~~p~~~~ 254 (287)
T 3qou_A 179 LQDQDT--RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR--XDLTAAD 254 (287)
T ss_dssp GGGCSH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTGGG
T ss_pred hhhcch--HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--ccccccc
Confidence 888743 344444455566777888888999999999999999999999999999999999999999998 44433
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1899 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1899 ~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
. ..|..++.+....|+.+.+...|+|++..+
T Consensus 255 ~-~a~~~l~~~~~~~g~~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 255 G-QTRXTFQEILAALGTGDALASXYRRQLYAL 285 (287)
T ss_dssp G-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Confidence 4 578888888888898888888888887653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-08 Score=127.85 Aligned_cols=239 Identities=7% Similarity=-0.104 Sum_probs=189.0
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH----c
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE----Y 1738 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~----~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~----~ 1738 (1935)
+..++...|++++.. ++...|..++.++.. .+++++|...|++|++.-+ ...+..+..++.. .
T Consensus 166 d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD-------ELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCC
Confidence 456677788888764 578889999888888 7899999999999986432 2345555555544 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------C
Q 000173 1739 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ------Q 1808 (1935)
Q Consensus 1739 g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~----~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~------~ 1808 (1935)
+ +.++|...|++|++.. ....+..++.+|.. .+++++|.+.|+++... ..+..++.++.++... +
T Consensus 237 ~--~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 237 Q--DYTQSRVLFSQSAEQG-NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp C--CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC
T ss_pred C--CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC
Confidence 5 5688999999998864 34678888888888 88999999999998865 5788888999888763 8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDL 1881 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g---~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e~ 1881 (1935)
+++|...|+++++.. +...+..+|.+++..| ++++|..+|++++.. .+.+.|+.++.++.. .+++++
T Consensus 312 ~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 312 REQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 999999999998763 3578999999988867 789999999999876 568899999999998 899999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 000173 1882 IRGLFERAISLSLPPKKMKFLFKKYLEYEKS----VGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1882 ar~lferal~~~~~pk~~k~l~~~yl~~E~~----~G~~e~a~~v~~rAle~v 1930 (1935)
|...|++++... . . ..|..+..+... .+|.+.|...|++|++.=
T Consensus 386 A~~~~~~A~~~~--~--~-~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 386 AAIWMRKAAEQG--L--S-AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTT--C--H-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--C--H-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 999999999832 2 2 345555555555 789999999999998764
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-10 Score=119.54 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=76.0
Q ss_pred EEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeecccc-CcccccCcccccCCCCEEEEE
Q 000173 1445 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL-SEDHVDNIETIYRAGEKVKVK 1523 (1935)
Q Consensus 1445 lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sel-s~~~~~~~~~~~~~Gd~V~~~ 1523 (1935)
+||+++..+. ...+.++++|+++.|+|++|++||+||+|...++.|++|.++. .+.+..++.+.|++||.|+|+
T Consensus 3 ~sl~P~~vn~-----~~~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vk 77 (119)
T 1wi5_A 3 SGSSGKNVNR-----VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCI 77 (119)
T ss_dssp CCCCCSCSSC-----CCCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEE
T ss_pred cccCHHHhhc-----cccHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEE
Confidence 4667766652 2346799999999999999999999999973356666665554 233445678899999999999
Q ss_pred EEEEecCCCeeEEeccccccCC
Q 000173 1524 ILKVDKEKRRISLGMKSSYFKN 1545 (1935)
Q Consensus 1524 Il~id~~~~ri~lslK~~~~~~ 1545 (1935)
|+++|.+++||.||+|+.++..
T Consensus 78 V~~vd~~~~~i~Lslk~~~l~~ 99 (119)
T 1wi5_A 78 VEKVKGNGGVVSLSVGHSEVST 99 (119)
T ss_dssp EEECCTTSCEEEEECCCCCSCC
T ss_pred EEEEeCCCCEEEEEEchhhccc
Confidence 9999999999999999876644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-09 Score=136.49 Aligned_cols=224 Identities=9% Similarity=-0.003 Sum_probs=182.1
Q ss_pred ccCCCCcHHHHHHHHHc---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch--hhHHHHHHHHHHHHH
Q 000173 1665 EKDAPRTPDEFERLVRS---SPN---SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE--NEKLNIWVAYFNLEN 1736 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~---~P~---s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee--~Ekl~lW~ayl~le~ 1736 (1935)
.++..+|...|++++.. .|+ .+..|..++.++...+++++|...+++|++..+...+ ......|..+..++.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 45688899999999865 233 5688999999999999999999999999986553322 223456777778888
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHh-----c-CCCHHHHHHHHHH
Q 000173 1737 EYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKK-----F-KHSCKVWLRRVQR 1803 (1935)
Q Consensus 1737 ~~g~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~~~~A~el~~~~~k~-----~-~~~~~vw~~~~~~ 1803 (1935)
..| ..++|...|++|++..+.. .+|..++.+|...|++++|.+.|++++.. . +....+|..++..
T Consensus 196 ~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 196 DLK--QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred Hhc--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 999 4599999999999875321 68999999999999999999999999983 4 5668889999999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCC---hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHK---HIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1876 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~---~~~~~~~~a~le~~~g~---~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~ 1876 (1935)
+... ++++|...|++|+...+... ....+..++.++...|+ .++|..+|++. ...|...+++..++.++...
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHER 352 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHC
Confidence 9999 99999999999998754321 12335668888889998 78888888876 33344456888999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 000173 1877 GDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1877 g~~e~ar~lferal~ 1891 (1935)
|++++|...|++++.
T Consensus 353 g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 353 KNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999987
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.6e-08 Score=125.25 Aligned_cols=236 Identities=6% Similarity=-0.125 Sum_probs=139.4
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH----cC
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE----YG 1739 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~----~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~----~g 1739 (1935)
..++...|+++.. +++...|..++..+.. .+++++|...|++|...-. ...|..+..++.. .+
T Consensus 95 ~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 95 YAQAVIWYKKAAL--KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR-------DSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCCC
Confidence 4445555655543 2455666666666665 5566666666666664311 2344555554444 33
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c-CHH
Q 000173 1740 NPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQE 1810 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~----~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~----~-~~e 1810 (1935)
+.++|.+.|++|++.. ....|..++.+|.. .+++++|.+.|+++... ..+..++.++.++.. . +++
T Consensus 166 --d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 166 --DYVMAREWYSKAAEQG-NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp --CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred --CHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 3466666666666652 34566666666666 66667777777666653 456666666666665 3 667
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHH
Q 000173 1811 GVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-----GDVDL 1881 (1935)
Q Consensus 1811 ~A~~ll~ralk~~p~~~~~~~~~~~a~le~~----~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~-----g~~e~ 1881 (1935)
+|...|++++... +...+..+|.++.. .+++++|..+|++++.. .+.+.+..++.++... ++.++
T Consensus 241 ~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 241 QSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp HHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 7777777666531 24566666666666 66777777777776643 4456666666666665 67777
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 000173 1882 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG---EEERIEYVKQKAME 1928 (1935)
Q Consensus 1882 ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G---~~e~a~~v~~rAle 1928 (1935)
|...|++++. ..+. ..|.....+....| +.+.|...|++|++
T Consensus 315 A~~~~~~a~~--~~~~---~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 315 AISWYTKSAE--QGDA---TAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHHH--TTCH---HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCH---HHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 7777777776 2222 22333333333335 55666666666654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6.1e-09 Score=119.36 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH---HHHH
Q 000173 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK----KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK---VWLR 1799 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~----~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~---vw~~ 1799 (1935)
.|...+......|+ .+.|...|+++++..|.. ..|+.++.+|.+.+++++|.+.|+++++.+|.+.. .|+.
T Consensus 6 ~~~~~a~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGN--WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 46666666777884 499999999999987752 78999999999999999999999999999987764 6777
Q ss_pred HHHHHHH------------------c-CHHHHHHHHHHHHHhCCCCChHH---------------HHHHHHHHHHHcCCH
Q 000173 1800 RVQRLLK------------------Q-QQEGVQAVVQRALLSLPRHKHIK---------------FISQTAILEFKNGVA 1845 (1935)
Q Consensus 1800 ~~~~l~~------------------~-~~e~A~~ll~ralk~~p~~~~~~---------------~~~~~a~le~~~g~~ 1845 (1935)
++..+.. . ++++|...|+++++..|.+.... .....|.++++.|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 7777664 4 78999999999999999875321 114667888899999
Q ss_pred HHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1846 DRGRSMFEGILSEYPKRT---DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1846 e~Ar~ife~al~~~Pk~~---dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+.|...|++++..+|++. ++|...+..+.+.|+.+.|+..|+++..
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 999999999999999875 5799999999999999999999998887
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.05 E-value=5.3e-09 Score=107.17 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.+|...+++++|..+|+++++..+.....|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHHHHHH
Confidence 35788888899999999999999999988888899999999988888 9999999999999988766 57888999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..|++++|..+|++++...|.+..+|..++.++...|++++|...|++++.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 9999999999999999999999989999999999999999999999999887
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.4e-10 Score=121.29 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1840 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~ 1840 (1935)
.++.++..+.+.|++++|...|+++++..|++..+|+.++..+... ++++|...|++++...| . ..++...+.+.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D--NSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C--hHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666 66666666666666665 3 233333343322
Q ss_pred -HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHHHcCCHH
Q 000173 1841 -KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK--KMKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1841 -~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk--~~k~l~~~yl~~E~~~G~~e 1917 (1935)
..+....|...|++++..+|.+..+|..++..+...|++++|...|++++. ..|. .. ..|..+.......|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~-~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK--VNLGAQDG-EVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTTTTT-HHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCcccChH-HHHHHHHHHHHHhCCCC
Confidence 222223456666666666666666666666666666666666666666666 3332 12 34555556666666666
Q ss_pred HHHHHHHHHHHH
Q 000173 1918 RIEYVKQKAMEY 1929 (1935)
Q Consensus 1918 ~a~~v~~rAle~ 1929 (1935)
.+...|++|+..
T Consensus 162 ~A~~~y~~al~~ 173 (176)
T 2r5s_A 162 AIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 666666666543
|
| >3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-10 Score=131.19 Aligned_cols=76 Identities=29% Similarity=0.596 Sum_probs=71.5
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEec-CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~-~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.++|++|.|+|+++.+||+||+|++ .+++||||+|++++.++.++.+.|++||.|.|+|+++|+++++|+||+|..
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~ 85 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRV 85 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 3589999999999999999999973 379999999999999999999999999999999999999999999999984
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=119.63 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000173 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1805 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~ 1805 (1935)
.++.........| ..+.|...|+++++..|.. ..|..++.+|.+.|++++|...|++++...| ++..+..++...+
T Consensus 8 ~~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQG--EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTT--CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 5788888888999 5599999999999998875 9999999999999999999999999999888 7777666654433
Q ss_pred H-c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHH
Q 000173 1806 K-Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDL 1881 (1935)
Q Consensus 1806 ~-~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~--~dlw~~ya~~e~k~g~~e~ 1881 (1935)
. . ....|...|++++...|.+ ..+|..+|.++...|++++|...|+++++..|.. ..+|..++.++...|+.+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDN--FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2 2 4456799999999999987 6999999999999999999999999999999986 5599999999999999999
Q ss_pred HHHHHHHHHh
Q 000173 1882 IRGLFERAIS 1891 (1935)
Q Consensus 1882 ar~lferal~ 1891 (1935)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6.4e-09 Score=119.19 Aligned_cols=174 Identities=8% Similarity=-0.055 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1760 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1760 (1935)
+...|...+..+++.|++++|...|+++++..|.... ....|..++..+...|+ .+.|...|+++++..|..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~a~~~lg~~~~~~~~--~~~A~~~~~~~l~~~P~~~~~~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY--SQQVQLDLIYAYYKNAD--LPLAQAAIDRFIRLNPTHPNID 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT--HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCTTHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHCcCCCcHH
Confidence 3456777777778888888888888888876554321 12356666666777774 488888888888877753
Q ss_pred HHHHHHHHHHHH------------------cCChHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHH
Q 000173 1761 KVHLALLGLYER------------------TEQNKLADELLYKMIKKFKHSCKVW-----------------LRRVQRLL 1805 (1935)
Q Consensus 1761 ~v~~~l~~i~~~------------------~~~~~~A~el~~~~~k~~~~~~~vw-----------------~~~~~~l~ 1805 (1935)
..|+.++.+|.. .+++++|...|+++++.+|++..+| +.++.+++
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666654 5688999999999999999887666 56778888
Q ss_pred Hc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1806 KQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1806 ~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
.. ++++|...|+++++..|.... ..+|...|..+.+.|++++|+..|+++....|+.
T Consensus 159 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 88 999999999999999998742 3789999999999999999999999999999875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.7e-09 Score=126.28 Aligned_cols=162 Identities=13% Similarity=0.096 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
..|+.........| +.+.|...|++|++..|.. ..|+.++.+|.+.|++++|...|++++...|+....++..+..+
T Consensus 118 ~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQES--NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 46777777778889 5699999999999999975 99999999999999999999999999999886665555666556
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDL 1881 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~--~dlw~~ya~~e~k~g~~e~ 1881 (1935)
... +.+.|...|++++...|.+ ..++..+|.++...|++++|...|+++++.+|.. ..+|..++.++...|+.+.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~P~~--~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAENPED--AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 666 8888999999999999987 6999999999999999999999999999999998 7899999999999999999
Q ss_pred HHHHHHHHHh
Q 000173 1882 IRGLFERAIS 1891 (1935)
Q Consensus 1882 ar~lferal~ 1891 (1935)
|...|+|++.
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-09 Score=119.63 Aligned_cols=163 Identities=11% Similarity=0.003 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHc-CHHHHHHHHHHHHHhC
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR----------------RVQRLLKQ-QQEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~----------------~~~~l~~~-~~e~A~~ll~ralk~~ 1823 (1935)
..++..+..+...|++++|...|++++...|.+..+|+. ++..+... ++++|...|+++++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 345566677788889999999999998888888888888 99999999 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCchhHHH
Q 000173 1824 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD--VDLIRGLFERAISLSLPPKKMKF 1901 (1935)
Q Consensus 1824 p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~--~e~ar~lferal~~~~~pk~~k~ 1901 (1935)
|.+ +.+|..+|.+++..|++++|...|+++++.+|++.+.|..++.++...|+ .+.+...|.+++. .+|...
T Consensus 85 p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-- 158 (208)
T 3urz_A 85 PNN--VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY-- 158 (208)
T ss_dssp TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH--
T ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH--
Confidence 987 69999999999999999999999999999999999999999999877654 4456777877765 444332
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1902 LFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1902 l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|..........|+++.|...|++|++.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2222222233468899999999998764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-08 Score=119.99 Aligned_cols=228 Identities=11% Similarity=0.103 Sum_probs=186.5
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 000173 1692 YMAFMLSMADV-EKARSIAERALQTINIREENEKLNIWVAYFNLENEYG-NPPEEAVVKVFQRALQYCDPK-KVHLALLG 1768 (1935)
Q Consensus 1692 y~~~~l~~~e~-dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g-~~~~e~a~~vferAl~~~~~~-~v~~~l~~ 1768 (1935)
|....++.+++ ++|..+++++|...| .. ..+|.....+...++ . ..+++.+.++.+++.+|.. .+|.....
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~nP-~~----~taWn~R~~~L~~l~~~-~~~eeL~~~~~~L~~nPk~y~aW~~R~~ 111 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINELA-SH----YTIWIYRFNILKNLPNR-NLYDELDWCEEIALDNEKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCT-TC----HHHHHHHHHHHHTCTTS-CHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCc-HH----HHHHHHHHHHHHHcccc-cHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 33334455554 689999999996554 22 569998887777777 3 3599999999999999986 99999988
Q ss_pred HH----HHc---CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHH--HHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1769 LY----ERT---EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE--GVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1769 i~----~~~---~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e--~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
++ ... ++++++.+++.+++..+|.+..+|....-.+... .++ ++.+.+.+++..+|.+ ..+|...+.+
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--NSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Confidence 88 666 7899999999999999999999999999877777 766 9999999999999988 4899999999
Q ss_pred HHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcC-CCchhHHHHHHHHHHHH
Q 000173 1839 EFKNGV------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-DLIRGLFERAISLS-LPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1839 e~~~g~------~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~-e~ar~lferal~~~-~~pk~~k~l~~~yl~~E 1910 (1935)
....+. ++++...+.+++..+|.+..+|+....++.+.|.. +.+...+++++... ..++.. ..|.-.++..
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~al~~la~~~ 268 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS-FALETLAKIY 268 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH-HHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH-HHHHHHHHHH
Confidence 888887 99999999999999999999999999888888874 44777888777632 113333 4555556666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 000173 1911 KSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1911 ~~~G~~e~a~~v~~rAle 1928 (1935)
.+.|+.++|..+|+++.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 678999999999999876
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.8e-09 Score=109.43 Aligned_cols=118 Identities=10% Similarity=-0.029 Sum_probs=105.7
Q ss_pred HHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1753 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1753 Al~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
+...+|.. ..|...++.|.+.|++++|.+.|+++++..|.+..+|..++..+... ++++|...|+++++..|.+ ..
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~ 82 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--IK 82 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--hH
Confidence 33344443 78888999999999999999999999999999999999999999999 9999999999999999887 68
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
+|..+|..++..|++++|...|+++++.+|++.+++..+..+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999999998877654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-09 Score=139.34 Aligned_cols=152 Identities=11% Similarity=0.039 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
.++|.+.|++|++..|.. ..|..++.+|.+.+++++|.+.|+++++..|.+..+|+.++..+... ++++|.+.|++++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 84 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 488999999999998874 99999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCch
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL---GDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~---g~~e~ar~lferal~~~~~pk 1897 (1935)
+..|.+ ..+|..+|.+++..|++++|...|+++++..|.+..+|..++.++... |++++|...|++++. ..|.
T Consensus 85 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~--~~p~ 160 (568)
T 2vsy_A 85 DAAPEH--PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA--QGVG 160 (568)
T ss_dssp HHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH--HTCC
T ss_pred hcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh--cCCc
Confidence 999887 689999999999999999999999999999999999999999999999 999999999999998 4444
Q ss_pred h
Q 000173 1898 K 1898 (1935)
Q Consensus 1898 ~ 1898 (1935)
.
T Consensus 161 ~ 161 (568)
T 2vsy_A 161 A 161 (568)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=8e-09 Score=128.25 Aligned_cols=224 Identities=10% Similarity=-0.002 Sum_probs=180.8
Q ss_pred ccCCCCcHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch--hhHHHHHHHHHHHHH
Q 000173 1665 EKDAPRTPDEFERLVRSS------PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE--NEKLNIWVAYFNLEN 1736 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~------P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee--~Ekl~lW~ayl~le~ 1736 (1935)
.++..+|...|++++... |.....|..++.++...+++++|...+++|+...+...+ ......|..+...+.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 456888999999998542 235678899999999999999999999999986553222 223567778888889
Q ss_pred HcCCCCHHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hcCCCHHHHHHHHHHH
Q 000173 1737 EYGNPPEEAVVKVFQRALQYCD---P----KKVHLALLGLYERTEQNKLADELLYKMIK-----KFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1737 ~~g~~~~e~a~~vferAl~~~~---~----~~v~~~l~~i~~~~~~~~~A~el~~~~~k-----~~~~~~~vw~~~~~~l 1804 (1935)
..| ..+.|.+.|++|++..+ . ..+|..++.+|...|++++|.+.|++++. ..+....++..++..+
T Consensus 194 ~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 194 DFK--HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 999 45999999999998642 1 17889999999999999999999999998 5566688999999999
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCC---ChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRH---KHIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~---~~~~~~~~~a~le~~~g~---~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
... ++++|...|++++...+.. .....+..++.++...++ +.+|...|++. ...|....++..++.++...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 999 9999999999999987652 223455666666777788 77888888772 223344567889999999999
Q ss_pred CHHHHHHHHHHHHh
Q 000173 1878 DVDLIRGLFERAIS 1891 (1935)
Q Consensus 1878 ~~e~ar~lferal~ 1891 (1935)
++++|...|++++.
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999987
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-09 Score=107.46 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=96.0
Q ss_pred cCCCHHHHHHHHHHHHHc-CH------HHHHHHHHHHHHhCCCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1790 FKHSCKVWLRRVQRLLKQ-QQ------EGVQAVVQRALLSLPRHKH------IKFISQTAILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1790 ~~~~~~vw~~~~~~l~~~-~~------e~A~~ll~ralk~~p~~~~------~~~~~~~a~le~~~g~~e~Ar~ife~al 1856 (1935)
.|.+++.|..|+..+... ++ ++.+++|+||+...|..++ +.+|..||.++ ..+|+++||.+|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Confidence 367899999999988877 77 8889999999999887543 68999999884 5699999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1857 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1857 ~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
..+.+..-+|..||+||+++|+..+||.++.+|+. +.|+.. .++...+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG--~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE--RGAVPL-EMLEIAL 135 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCBCH-HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCCCcH-HHHHHHH
Confidence 98888888999999999999999999999999999 666555 3444444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8.6e-09 Score=135.51 Aligned_cols=152 Identities=13% Similarity=0.158 Sum_probs=125.0
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1773 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1851 (1935)
Q Consensus 1773 ~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~i 1851 (1935)
.+++++|.+.|+++++..|.+..+|+.++..+... ++++|.+.|+++++..|.+ ..+|..+|.+++..|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH--PEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999999999999999999999999999 9999999999999999877 68999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 000173 1852 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV---GEEERIEYVKQKAME 1928 (1935)
Q Consensus 1852 fe~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~---G~~e~a~~v~~rAle 1928 (1935)
|+++++.+|.+..+|..++..+...|++++|...|++++. ..|... ..|..+....... |+.+.|...+++|++
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEP-YITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 677766 5778888888888 999999999999987
Q ss_pred H
Q 000173 1929 Y 1929 (1935)
Q Consensus 1929 ~ 1929 (1935)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-07 Score=109.99 Aligned_cols=223 Identities=11% Similarity=0.018 Sum_probs=180.2
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD----------VEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1737 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e----------~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~ 1737 (1935)
.+++...++++|..+|++..+|..-.......+. ++++...++.++...|-+ ..+|.....+...
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn-----y~aW~hR~wlL~~ 120 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTWHHRCWLLSR 120 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHhc
Confidence 6678899999999999999999988777765554 688999999999765532 4699998888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCC-hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------
Q 000173 1738 YGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQ-NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-------- 1807 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~-~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-------- 1807 (1935)
++.+..+.+.+.+.++++..|.+ ..|....-+....+. ++++.+.+.+++...+.+..+|...+..+...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 88422488999999999998864 999999999999998 59999999999999999999999888776653
Q ss_pred -------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000173 1808 -------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN-----------GVADRGRSMFEGILSEYPKRTDLWSIY 1869 (1935)
Q Consensus 1808 -------~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~-----------g~~e~Ar~ife~al~~~Pk~~dlw~~y 1869 (1935)
.++++.+.+.+++...|.+. .+|.....++... +.++++...++.++...|++.=.+..+
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~--SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 26889999999999999984 7887655555543 357899999999999999983333333
Q ss_pred HHHHH---HcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1870 LDQEI---RLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1870 a~~e~---k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
+.+.. ..+..++++..+.+++. +.|-+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~ 309 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKA--VDPMRA 309 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHH--hCcchh
Confidence 33322 35778899999999998 888766
|
| >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.3e-10 Score=128.95 Aligned_cols=78 Identities=28% Similarity=0.513 Sum_probs=72.9
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEec-CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~-~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..+++|++|.|+|+++.+||+||.|.+ .++.||+|+|++++.++.++.+.|++||.|.|+|+++|+++++|.||+|..
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~ 85 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKV 85 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTS
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 467899999999999999999999962 379999999999999999999999999999999999999999999999985
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.9e-08 Score=99.83 Aligned_cols=132 Identities=19% Similarity=0.196 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000173 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1805 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~ 1805 (1935)
.|..++......| ..+.|...|+++++..+. ...|..++.++...+++++|...|++++...+....+|..++..+.
T Consensus 3 ~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQG--DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 5788888888889 559999999999998875 4889999999999999999999999999999999999999999999
Q ss_pred Hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1806 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1806 ~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
.. ++++|...|+++++..|.. ..+|..+|.+++..|++++|...|++++...|.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99 9999999999999998876 5899999999999999999999999999998863
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.1e-09 Score=128.05 Aligned_cols=144 Identities=13% Similarity=0.028 Sum_probs=126.1
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHc-C
Q 000173 1746 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---------------CKVWLRRVQRLLKQ-Q 1808 (1935)
Q Consensus 1746 a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---------------~~vw~~~~~~l~~~-~ 1808 (1935)
|.+.|++++...+.. ..|..++.+|.+.+++++|...|++++...+.. ..+|++++.+++.. +
T Consensus 132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 211 (336)
T 1p5q_A 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211 (336)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444455555544433 778888899999999999999999999988877 69999999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI-RGLFE 1887 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a-r~lfe 1887 (1935)
+++|...|++|+...|.+ ..+|..+|.+++..|++++|+..|+++++.+|.+..+|..++.++.+.|+.++| +.+|.
T Consensus 212 ~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 212 FSAAIESCNKALELDSNN--EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp HHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 699999999999999999999999999999999999999999999999999988 66777
Q ss_pred HHHh
Q 000173 1888 RAIS 1891 (1935)
Q Consensus 1888 ral~ 1891 (1935)
+++.
T Consensus 290 ~~~~ 293 (336)
T 1p5q_A 290 NMFE 293 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.9e-11 Score=155.69 Aligned_cols=129 Identities=19% Similarity=0.376 Sum_probs=53.8
Q ss_pred CCCCCEE--EEEEEE--EeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1376 LSPNMIV--QGYVKN--VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1376 lk~G~~v--~G~V~~--v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
-+.|+++ .|++.+ +.++|+||+++. +|.|+++..++...+...+. +.. +
T Consensus 607 ~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--dG~v~Is~~~~~~~~~a~~~--------------------i~~-i---- 659 (757)
T 1e3p_A 607 DKIGEVIGPKRQMINQIQEDTGAEITIED--DGTIYIGAADGPAAEAARAT--------------------ING-I---- 659 (757)
T ss_dssp --------------CTTCCCCCSCC----------CCCBSSHHHHCC---------------------------------
T ss_pred HHeehcccccceeeehhhHhhCCEEEecC--CceEEEecCCHHHHHHHHHH--------------------HHH-h----
Confidence 3456555 366666 478899999984 89999998876543322111 100 0
Q ss_pred ccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeecccc----CcccccCcccccCCCCEEEEEEEEE
Q 000173 1452 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL----SEDHVDNIETIYRAGEKVKVKILKV 1527 (1935)
Q Consensus 1452 ~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sel----s~~~~~~~~~~~~~Gd~V~~~Il~i 1527 (1935)
.+ ..++++|++|.|+|+++.+||+||+|.+ +++||+|+|++ ++.+++++.+.|++||.|+|+|+++
T Consensus 660 ~~---------p~~~~vG~i~~G~V~~i~~fGaFV~l~~-g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~v 729 (757)
T 1e3p_A 660 AN---------PTSPEVGERILGSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEI 729 (757)
T ss_dssp ----------------------CBEEECC-CSCEECCC----CCCCC-------------------CCSSCBCCCCCCCC
T ss_pred cc---------hhhcccccEEEEEEEEccccEEEEEEcC-CcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEE
Confidence 01 1468999999999999999999999986 79999999999 9999999999999999999999999
Q ss_pred ecCCCeeEEeccccc
Q 000173 1528 DKEKRRISLGMKSSY 1542 (1935)
Q Consensus 1528 d~~~~ri~lslK~~~ 1542 (1935)
|+ ++||+||+|+..
T Consensus 730 d~-~grI~LS~k~~~ 743 (757)
T 1e3p_A 730 DS-RGKLSLIPVIEG 743 (757)
T ss_dssp CS-SCC---------
T ss_pred CC-CCCEEEEEecCC
Confidence 98 999999999853
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-08 Score=105.75 Aligned_cols=129 Identities=13% Similarity=-0.001 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.++...+++++|...|++++...+....+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHH
Confidence 67888889999999999999999999999999999999999999988 9999999999999998876 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHh
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ--EIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~--e~k~g~~e~ar~lferal~ 1891 (1935)
+..|++++|...|++++..+|.+..+|..+... +...|++++|..+|+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888554444 7778888888888887664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-09 Score=113.63 Aligned_cols=107 Identities=8% Similarity=-0.045 Sum_probs=66.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1783 LYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1783 ~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
|++++...|++...|+.++..+++. ++++|...|++++...|.+ ..+|..+|..++..|++++|...|+++++.+|+
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3344444455556666666666666 6666666666666666655 356666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1862 RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1862 ~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..+|+.++..+...|+++.|+..|++++.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666666
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.4e-08 Score=119.01 Aligned_cols=218 Identities=9% Similarity=0.005 Sum_probs=155.5
Q ss_pred CCHHHHHHHHHHHHHhccc-----cchh-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHHHHHH
Q 000173 1700 ADVEKARSIAERALQTINI-----REEN-EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKVHLAL 1766 (1935)
Q Consensus 1700 ~e~dkAr~v~erAl~~i~~-----~ee~-Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~v~~~l 1766 (1935)
+++++|.+++++|.+..+. ..+. +-...+...++++...+ ..+.|...|++|++..+. -..|..+
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAK--QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555556555543331 0111 11234444456667788 459999999999987532 2788999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCC----hHHHHHHHH
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHK----HIKFISQTA 1836 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~------~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~----~~~~~~~~a 1836 (1935)
+.+|...+++++|.+.|++++..+.. ....|.+++..+...++++|...|++|+...+... ...++..+|
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99999999999999999999988742 24677788877744499999999999999876532 147899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chhHHHHHHHHH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKR------TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP---PKKMKFLFKKYL 1907 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~------~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~---pk~~k~l~~~yl 1907 (1935)
.++...|++++|...|++++..+|.. ...|...+..+...|++++|+..|++++ .... .... .+....+
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~-~~l~~l~ 240 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC-AALEDLL 240 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH-HHHHHHH
Confidence 99999999999999999999986653 2367777888888999999999999999 4321 1122 2333333
Q ss_pred HHHHHcCCHHHHHHH
Q 000173 1908 EYEKSVGEEERIEYV 1922 (1935)
Q Consensus 1908 ~~E~~~G~~e~a~~v 1922 (1935)
... ..|+.+....+
T Consensus 241 ~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 241 QAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHH-HTTCHHHHHHH
T ss_pred HHH-HhcCHHHHHHH
Confidence 322 46777665553
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=147.16 Aligned_cols=81 Identities=11% Similarity=0.189 Sum_probs=76.2
Q ss_pred ccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccc-ccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1462 ~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~-~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
+..++++|++|.|+|++|++||+||+|+. +++||||+|++++.+ +.++.+.|++||.|+|+|++||.+++||+||||.
T Consensus 896 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 896 SEKTFFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp CTTTSCTTCEEEEEEEEECSSCEEEECTT-SCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred cHhhCCCCCEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecH
Confidence 46899999999999999999999999965 899999999999998 8899999999999999999999999999999998
Q ss_pred ccc
Q 000173 1541 SYF 1543 (1935)
Q Consensus 1541 ~~~ 1543 (1935)
+.+
T Consensus 975 ~dl 977 (1219)
T 3psi_A 975 HDV 977 (1219)
T ss_dssp HHH
T ss_pred HHh
Confidence 644
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-08 Score=107.59 Aligned_cols=113 Identities=6% Similarity=-0.076 Sum_probs=105.9
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1749 VFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1749 vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
.|+++++..|.. ..|+.++..+.+.|++++|...|++++...|.++..|+.++..+... ++++|...|++|++..|.+
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 367777777765 89999999999999999999999999999999999999999999999 9999999999999999988
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000173 1827 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1863 (1935)
Q Consensus 1827 ~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~ 1863 (1935)
. .+|..+|..++..|++++|...|+++++..|+..
T Consensus 104 ~--~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 Y--TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp C--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred c--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 4 8999999999999999999999999999999864
|
| >3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-10 Score=147.76 Aligned_cols=116 Identities=23% Similarity=0.517 Sum_probs=0.0
Q ss_pred EEEE-eeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccC
Q 000173 1386 VKNV-TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1464 (1935)
Q Consensus 1386 V~~v-~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~ 1464 (1935)
|+.+ .+.|+||+++. +|.++++..++...+...+. + . ....
T Consensus 582 I~~I~~~~G~~IdI~~--dg~v~I~~~~~~~~~~a~~~--------------------i---------~-------~i~~ 623 (723)
T 3cdi_A 582 IRALTEETGTTIEIED--DGTVKIAATDGEKAKHAIRR--------------------I---------E-------EITA 623 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeehhhCceEEecC--CccEEEecCCHHHHHHHHHH--------------------H---------H-------HHhh
Confidence 4555 45799999984 78888876554322222110 0 0 0135
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
++++|++|.|+|+++.+||+||+|.+ +++||+|+|++++.+++++.+.|++||.|+|+|+++|+ ++||+||+|..
T Consensus 624 ~~~vG~i~~G~V~~i~~fGaFVel~~-g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~ 698 (723)
T 3cdi_A 624 EIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 698 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred hhhcCcEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 78999999999999999999999986 79999999999999999999999999999999999997 99999999985
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4e-08 Score=104.84 Aligned_cols=117 Identities=7% Similarity=-0.113 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
...|++++...|.. ..|+.++..+.+.|++++|...|++++...|.+..+|+.++..+... ++++|...|++++...|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34577888877765 77888888888888888888888888888888888888888888888 88888888888888888
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1865 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl 1865 (1935)
.+. .+|..+|.++...|++++|...|++++...|.+.+.
T Consensus 87 ~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEP--RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 763 788888888888888888888888888888776544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-08 Score=101.43 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=70.7
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhccccchh--hH-HHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000173 1680 RSSPNSSFVWIKYMAFMLSMADV------EKARSIAERALQTINIREEN--EK-LNIWVAYFNLENEYGNPPEEAVVKVF 1750 (1935)
Q Consensus 1680 ~~~P~s~~lW~~y~~~~l~~~e~------dkAr~v~erAl~~i~~~ee~--Ek-l~lW~ayl~le~~~g~~~~e~a~~vf 1750 (1935)
...|+|.+.|..|+......|+. ++.|++|+||+..+|+.... ++ ..+|+.|+.++ ..+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~----------- 74 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQ----------- 74 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHH-----------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-Hhc-----------
Confidence 45799999999999999888888 89999999999988875200 00 13444444442 112
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1751 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1751 erAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
+.++|+++|+.|++..+...++|+.||+|+.++ +..+||+++.+|+..+|..
T Consensus 75 ------------------------D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 75 ------------------------EPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp ------------------------CGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred ------------------------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 333344444444333333377777777777777 7777777777777776655
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.3e-07 Score=123.31 Aligned_cols=145 Identities=11% Similarity=0.046 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1840 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~ 1840 (1935)
.|..++.+|.+.|++++|.+.+.++ .+...|...+..+... ++..|+..... +. .|++.+...+.+|.
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii-----v~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-----VHADELEELINYYQ 1291 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh-----cCHHHHHHHHHHHH
Confidence 3444444444444444444444444 2334444444444444 44444433332 11 12345557777888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHHHc
Q 000173 1841 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRGLFERAISLSLPP-----KKMKFLFKKYLEYEKSV 1913 (1935)
Q Consensus 1841 ~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~--g~~e~ar~lferal~~~~~p-----k~~k~l~~~yl~~E~~~ 1913 (1935)
+.|.+++|..+||.+|...|.++.+|..++.++.+. ++..++..+|...++ .++ .++ .+|..+.-++.++
T Consensus 1292 ~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~-~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQA-HLWAELVFLYDKY 1368 (1630)
T ss_pred HcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHH-HHHHHHHHHHHhc
Confidence 999999999999999999999999998888888875 456667778887776 555 556 6899999999999
Q ss_pred CCHHHHH
Q 000173 1914 GEEERIE 1920 (1935)
Q Consensus 1914 G~~e~a~ 1920 (1935)
|+++.|.
T Consensus 1369 ~e~dnA~ 1375 (1630)
T 1xi4_A 1369 EEYDNAI 1375 (1630)
T ss_pred ccHHHHH
Confidence 9988776
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=106.55 Aligned_cols=118 Identities=10% Similarity=-0.084 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
..|++++...|.. ..|+.++..+.+.|++++|...|++++...|.+..+|+.++..+... ++++|...|++++...|.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4567777776654 77778888888888888888888888888888888888888888888 888888888888888877
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+. .+|..+|.+++..|++++|...|++++...|.+.+.+.
T Consensus 85 ~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EP--RFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred Cc--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 63 77888888888888888888888888888777655443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=9.8e-08 Score=97.28 Aligned_cols=117 Identities=14% Similarity=0.014 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.++...+++++|.+.|++++...+....+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHHHHHH
Confidence 67888888999999999999999999999888999999999999888 9999999999999988876 58899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1879 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~ 1879 (1935)
+..|++++|...|++++...|.+..+|..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999888887764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.6e-08 Score=117.11 Aligned_cols=193 Identities=9% Similarity=0.005 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------
Q 000173 1688 VWIKYMAFMLSMADVEKARSIAERALQTINIRE-ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------- 1759 (1935)
Q Consensus 1688 lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e-e~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~------- 1759 (1935)
.+.+.+..+...+++++|...|++|+...+... .......|..+..++...|++ +.|...|++|++....
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~--~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM--PEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG--GGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHcCCHHHH
Confidence 344456677889999999999999997543211 112346777788888888955 9999999999987421
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----
Q 000173 1760 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH---- 1828 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~---- 1828 (1935)
...|..++.+|.. +++++|.+.|++++..++.. ..+|.+++.++... ++++|...|++++...|....
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 2788999999998 99999999999999988533 67899999999999 999999999999998665431
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHHHH
Q 000173 1829 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD-----LWSIYLDQEIRLGDVDLIRGL 1885 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d-----lw~~ya~~e~k~g~~e~ar~l 1885 (1935)
...|...+.+++..|++++|+..|++++ .+|...+ ++..++.. ...|+.+.++.+
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~-~~~~d~~~~~~~ 254 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQA-YDEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHH-HHhcCHHHHHHH
Confidence 3478888889999999999999999999 9886432 23333333 356777766553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-07 Score=112.37 Aligned_cols=229 Identities=12% Similarity=0.066 Sum_probs=184.8
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHc-C-CCCHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY-G-NPPEE 1744 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~-e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~-g-~~~~e 1744 (1935)
.+++...++++|..+|++..+|..-.......+ .++++...+++++...|. . ..+|.....+...+ + .+ +
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-n----y~aW~hR~wlL~~l~~~~~--~ 142 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-S----YQVWHHRLLLLDRISPQDP--V 142 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-C----HHHHHHHHHHHHHHCCSCC--H
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-c----HHHHHHHHHHHHHhcCCCh--H
Confidence 667888999999999999999999999998888 599999999999976553 2 46999888777766 6 55 7
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChH--------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C------
Q 000173 1745 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNK--------LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------ 1808 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~--------~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~------ 1808 (1935)
.+.+.++++++..|. ...|....-++.+.+.++ ++.+.+.+++...+.+..+|...+..+... .
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 889999999999886 499999888888887777 999999999999999999999998877665 5
Q ss_pred -HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhC------CC
Q 000173 1809 -QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA--------------------DRGRSMFEGILSEY------PK 1861 (1935)
Q Consensus 1809 -~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~--------------------e~Ar~ife~al~~~------Pk 1861 (1935)
++++.+.+.+++...|.+. .+|.....++.+.|.. +........++... +.
T Consensus 223 ~~~eELe~~~~aI~~~P~n~--SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNV--SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 7899999999999999984 8998888888777654 22222222222222 46
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1862 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1862 ~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
+..+|.-+++++...|+.++|..+|+.+.. +..|-+. ..|.-.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~-~yw~~~~ 344 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRA-GYWEFRR 344 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGH-HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHH-HHHHHHH
Confidence 788999999999999999999999999875 5777776 5776544
|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-09 Score=141.64 Aligned_cols=79 Identities=35% Similarity=0.605 Sum_probs=74.8
Q ss_pred ccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1462 ~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.+.++++|++|.|+|++|++||+||+|+. +++||||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|.+
T Consensus 648 ~~~~l~vG~iv~G~V~~V~~fGaFV~l~~-~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~ 726 (785)
T 3bzc_A 648 SLKDLKPGMVLEGVVTNVTNFGAFVDIGV-HQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMS 726 (785)
T ss_dssp SSTTCCTTCBCCCEEEEEETTEEEEECSS-SSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSC
T ss_pred chhhcCCCCEEEEEEEEEecCCeEEEeCC-CcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecC
Confidence 46789999999999999999999999965 79999999999999999999999999999999999999999999999864
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=6e-08 Score=99.59 Aligned_cols=116 Identities=10% Similarity=-0.050 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.++.+.+++++|.+.|++++...+.+..+|+.++..+... ++++|...|+++++..|.. ..+|..+|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHHHHHH
Confidence 77888888888999999999999999988888889999999888888 9999999999999988775 58889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1878 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~ 1878 (1935)
+..|++++|...|++++...|.+..+|..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999888888888888877653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.79 E-value=4.4e-08 Score=116.51 Aligned_cols=191 Identities=11% Similarity=-0.070 Sum_probs=152.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1761 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1761 (1935)
|+++..|...+..+...|++++|...|++|++..|.. ..+|..+...+...| ..+.|...|++|++..|.. .
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~ 73 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALCYLKMQ--QPEQALADCRRALELDGQSVK 73 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHTTSCTTCHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHH
Confidence 6788999999999999999999999999999876632 468999999999999 4599999999999998875 9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~-----~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
.|+.++.+|...|++++|...|+++++..|++ ..+|..+. ..++...........|... .++..++
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~i~~~l~ 144 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-------IAKKKRWNSIEERRIHQES--ELHSYLT 144 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-------HHHHHHHHHHHHTCCCCCC--HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhH--HHHHHHH
Confidence 99999999999999999999999999987644 34444332 2222233333333455553 5666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-GDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~-g~~e~ar~lferal~ 1891 (1935)
.+. .|++++|...|+++++..|.+..++..+..++.+. +.+++|+.+|+++..
T Consensus 145 ~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 145 RLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 654 68999999999999999999888888888777776 678899999998875
|
| >1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-08 Score=113.70 Aligned_cols=79 Identities=24% Similarity=0.492 Sum_probs=69.6
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEecCCC
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKR 1532 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~V~~~Il~id~~~~ 1532 (1935)
....+|+++.|+|+++++||+||+|.+ ++||+|+|+++++++. +....|++||.|+++|+++|.+++
T Consensus 77 ~~~~~Gev~~G~V~~v~~~G~fV~l~~--~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 154 (187)
T 1go3_E 77 YIPEMYELIEGEVVDVVEFGSFVRLGP--LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAE 154 (187)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECSS--SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-
T ss_pred EccCCCCEEEEEEEEEeCcEEEEEEcC--ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccC
Confidence 356889999999999999999999964 9999999999988765 677899999999999999998765
Q ss_pred -----eeEEeccccccC
Q 000173 1533 -----RISLGMKSSYFK 1544 (1935)
Q Consensus 1533 -----ri~lslK~~~~~ 1544 (1935)
+|.||+|..+.+
T Consensus 155 ~p~~~~I~lS~k~~~LG 171 (187)
T 1go3_E 155 RKRGSKIALTMRQPYLG 171 (187)
T ss_dssp ----CEEEEECCSTTCE
T ss_pred CCCccEEEEEEcCCCCC
Confidence 999999986653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.6e-08 Score=107.07 Aligned_cols=117 Identities=10% Similarity=0.110 Sum_probs=66.7
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH-HHHcCCH--HHH
Q 000173 1773 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL-EFKNGVA--DRG 1848 (1935)
Q Consensus 1773 ~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l-e~~~g~~--e~A 1848 (1935)
.+++++|.+.|++++...|.+..+|+.++..+... ++++|...|+++++..|.+ ..+|..+|.+ ++..|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN--AELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhcCCcchHHH
Confidence 44555555555555555555556666666655555 6666666666666555544 3555555555 4455555 666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1849 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1849 r~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
...|++++..+|.+..+|..++.++...|+++.|...|++++.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666666666666555666666666666666666666666655
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.3e-08 Score=100.81 Aligned_cols=113 Identities=10% Similarity=-0.050 Sum_probs=103.1
Q ss_pred hcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1789 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1789 ~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
..|.....|...|..+++. ++++|.+.|++|++..|.+ ..+|..+|..++..|++++|...|+++++.+|++...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4466778899999999999 9999999999999999987 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000173 1868 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1906 (1935)
Q Consensus 1868 ~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~y 1906 (1935)
.++..+...|++++|...|++++. +.|... ..+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~-~a~~~l 121 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ--VDPSNE-EAREGV 121 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCcCCH-HHHHHH
Confidence 999999999999999999999999 777776 344433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-08 Score=124.19 Aligned_cols=155 Identities=10% Similarity=0.030 Sum_probs=134.6
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-------------HHHHHHHHHHH
Q 000173 1774 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------IKFISQTAILE 1839 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-------------~~~~~~~a~le 1839 (1935)
.++++|.+.|++++...+.....|..++..++.. ++++|...|++|+...|.... ..+|..+|.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777766677888999999999999 999999999999999988731 48999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1919 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a 1919 (1935)
++.|++++|...|+++++.+|.+..+|+.++..+...|++++|+..|++++. +.|... ..|..+.......|+.+.+
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~-~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNK-AAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 777776 5777778888888888777
Q ss_pred -HHHHHHHHHHHH
Q 000173 1920 -EYVKQKAMEYVE 1931 (1935)
Q Consensus 1920 -~~v~~rAle~v~ 1931 (1935)
+.+|++++..+.
T Consensus 284 ~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 284 EKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 567887776654
|
| >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.6e-09 Score=122.58 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=73.6
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 758 HIHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~--~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
.+++|+.+.|.|++|+++|+||++. +++.||+|.|++++.++.++.+.|++||.|.|+|+++|++++++.||++....
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~~ 87 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTD 87 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTSCT
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEecch
Confidence 4578999999999999999999997 89999999999999999999999999999999999999999999999998753
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.3e-10 Score=147.43 Aligned_cols=81 Identities=11% Similarity=0.189 Sum_probs=0.4
Q ss_pred ccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccc-ccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1462 ~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~-~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
...++++|++|.|+|++|++||+||+|++ +++||||+|++++.+ +.++.+.|++||.|+|+|++||.+++||+||||.
T Consensus 899 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 899 SEKTFFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cHHHhcCCCEEEEEEEEEccCeEEEEeCC-CcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 45899999999999999999999999975 899999999999998 8899999999999999999999999999999998
Q ss_pred ccc
Q 000173 1541 SYF 1543 (1935)
Q Consensus 1541 ~~~ 1543 (1935)
+.+
T Consensus 978 ~dl 980 (1030)
T 3psf_A 978 HDV 980 (1030)
T ss_dssp ---
T ss_pred HHh
Confidence 654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-07 Score=106.00 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 000173 1728 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1807 (1935)
Q Consensus 1728 W~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~ 1807 (1935)
+..........| ..+.|...|++++ .+...+|..++.+|...+++++|.+.|++++...|....+|+.++..+...
T Consensus 9 ~~~~g~~~~~~~--~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKK--DWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 344555555666 3367777777764 334467777777777777777777777777777777777777777777776
Q ss_pred -CHHHHHHHHHHHHHhCCCCC--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1808 -QQEGVQAVVQRALLSLPRHK--------------HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1808 -~~e~A~~ll~ralk~~p~~~--------------~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
++++|...|+++++..|... ...+|..+|.+++..|++++|...|++++...|..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 77777777777777666543 34667777777777777777777777777777664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-07 Score=96.42 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++..+.+.+++++|.+.|+++++..|.+..+|..++..+... ++++|...|+++++..|.. ..+|..+|.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHH
Confidence 45677777777888888888888888888787888888888888777 8888888888888887766 57788888888
Q ss_pred HHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEY------PKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~------Pk~~dlw~~ya~~e~ 1874 (1935)
+..|++++|...|+++++.. |.+..+|..+.....
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88888888888888888877 777777776665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-07 Score=93.32 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.+|...+++++|.+.|+++++..+....+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888888888 8888888888888887766 57888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
+..|++++|...|++++...|.+..+|..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888888777766543
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-08 Score=139.50 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=77.5
Q ss_pred hhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc-cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1371 ~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~-~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
+++.++++|++|.|+|++|+++|+||+|+.+++|+||+++|+|.| +.+|.+.|++||.|+|+|++||.++++|.||+|.
T Consensus 895 et~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 895 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp CCTTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred CcHhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecH
Confidence 345789999999999999999999999999999999999999998 8999999999999999999999999999999998
Q ss_pred Ccc
Q 000173 1450 SDS 1452 (1935)
Q Consensus 1450 ~~~ 1452 (1935)
+..
T Consensus 975 ~dl 977 (1219)
T 3psi_A 975 HDV 977 (1219)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-07 Score=93.42 Aligned_cols=111 Identities=13% Similarity=-0.080 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.++...+++++|...|++++...|.+..+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHHHHHH
Confidence 56777777888888888888888888888888888888888888777 8888888888888887765 57788888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
...|++++|+..|++++...|.+..+|..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8888888888888888888888877777776654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-07 Score=99.00 Aligned_cols=135 Identities=10% Similarity=0.010 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
....|..++..++.. ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++..+|.+..+|..++.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 356788999999999 9999999999999999877 6899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1872 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK--KYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1872 ~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~--~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
.+...|+++.|...|++++. ..|... ..|. ..+......|+.+.|...++++.+...+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVK--VKPHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 99999999999999999998 555555 3443 3333355678999999999998887654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.73 E-value=6.1e-07 Score=121.85 Aligned_cols=219 Identities=14% Similarity=0.069 Sum_probs=135.7
Q ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000173 1674 EFERLVRS--SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1751 (1935)
Q Consensus 1674 ~ferll~~--~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vfe 1751 (1935)
.|++++.. ..++..+|.+|+..+++.|++++|...|.+|= + ...|+..+....+.|. .++|.+.|.
T Consensus 1091 nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAd-------D---~say~eVa~~~~~lGk--yEEAIeyL~ 1158 (1630)
T 1xi4_A 1091 NLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-------D---PSSYMEVVQAANTSGN--WEELVKYLQ 1158 (1630)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcC-------C---hHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 44555432 35788889999999999999999998888761 1 2467778888888884 488888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1752 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1752 rAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
.|.+..+...+...++..|.+.+++++ .+.|- ...+..-|..+|..+... ++++|..+|.+| .
T Consensus 1159 mArk~~~e~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ 1222 (1630)
T 1xi4_A 1159 MARKKARESYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------S 1222 (1630)
T ss_pred HHHhhcccccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------h
Confidence 888776444344445555555555553 22221 122334555666666666 666666666664 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------------------------HHHHHHHHcCCHH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS------------------------------IYLDQEIRLGDVD 1880 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~------------------------------~ya~~e~k~g~~e 1880 (1935)
.|...|..+.+.|+++.|...++++ .+...|. ..+.++.+.|.++
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHH
Confidence 5666666666666666666666665 2223333 4445566677777
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH
Q 000173 1881 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE--EERIEYVKQKAME 1928 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~--~e~a~~v~~rAle 1928 (1935)
+|..+||.++. +.+..+ .+|..+..++.++.. ..+..+.|...+.
T Consensus 1298 EAI~LlE~aL~--LeraH~-gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1298 ELITMLEAALG--LERAHM-GMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHHHHHhc--cChhHh-HHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 77777777776 556666 567666666555532 3333444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-08 Score=116.10 Aligned_cols=206 Identities=12% Similarity=0.028 Sum_probs=162.5
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhccc----cch------------
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKY-------MAFMLSMADVEKARSIAERALQTINI----REE------------ 1721 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y-------~~~~l~~~e~dkAr~v~erAl~~i~~----~ee------------ 1721 (1935)
..+...+...|.+++..+|...+.|+.+ ...+........+...+.|++..-|- +-.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 4557778889999999999999999999 56677777777777888888862111 000
Q ss_pred hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHH
Q 000173 1722 NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWL 1798 (1935)
Q Consensus 1722 ~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~ 1798 (1935)
..+-.+|++|..+.+..|+ .+.|.+.|++++...|....++.++.++.+.+++++|...|+.+... ++. ..+|+
T Consensus 99 ~~r~dl~LayA~~L~~~g~--y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~~a~~ 175 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGN--YADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAGAAGV 175 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTC--HHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHHHHHH
Confidence 1233688999999999994 49999999999887776558888888999999999999999866542 222 45888
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSL--PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1875 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~--p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k 1875 (1935)
.++..+... ++++|...|++++... |.. ...+++..|..+.++|+.++|+.+|++++..+|. ..+|..+.+..++
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~~ 253 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSYR 253 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCCC
Confidence 999988888 9999999999998543 322 3578999999999999999999999999999999 8888887766554
|
| >4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-09 Score=141.06 Aligned_cols=77 Identities=31% Similarity=0.528 Sum_probs=0.0
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..++++|++|.|+|++|.+||+||+|.+ +++||||+|+++++++.++.+.|++||.|+|+|+++|+ ++||.||+|..
T Consensus 632 ~~~~~vG~v~~G~V~~I~~fGaFVel~~-g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~ 708 (726)
T 4aid_A 632 TDEAEVGKIYDGKVVKVVDFGAFVNFFG-AKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVV 708 (726)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hhhhcCCcEEEEEEEEEeccEEEEEECC-CcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeec
Confidence 4688999999999999999999999987 79999999999999999999999999999999999997 89999999985
|
| >2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-08 Score=112.11 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=71.5
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEec-------CceeEEeeccccCccccc--CcccccCCCCEEEEEEEEEecCCCeeE
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIEN-------TNLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRIS 1535 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~-------~~v~Gl~h~sels~~~~~--~~~~~~~~Gd~V~~~Il~id~~~~ri~ 1535 (1935)
.+++||+|.|+|+++.++|+||+|.. .++.|++|+||+++.+++ ++.+.|++||.|+|+|++++.+.+++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 67999999999999999999999852 267999999999999888 899999999999999999997778999
Q ss_pred Eecccccc
Q 000173 1536 LGMKSSYF 1543 (1935)
Q Consensus 1536 lslK~~~~ 1543 (1935)
||+|....
T Consensus 158 LS~k~~~l 165 (209)
T 2nn6_I 158 LTTAENEL 165 (209)
T ss_dssp EECCSSSC
T ss_pred EEEecCCC
Confidence 99998544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.5e-08 Score=105.31 Aligned_cols=138 Identities=11% Similarity=0.088 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHc-CH--HHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR-LLKQ-QQ--EGVQAVVQR 1818 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~-l~~~-~~--e~A~~ll~r 1818 (1935)
+.|...|+++++..|.. ..|..++.+|...+++++|...|+++++..|.+..+|..++.. +... ++ ++|...|++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 77899999999998865 9999999999999999999999999999999999999999999 6666 77 999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal 1890 (1935)
++...|.+ ..+|..+|.+++..|++++|...|++++...|.+.+.+.... .+.+++.++....
T Consensus 107 al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------~i~~~~~~~~~~~ 169 (177)
T 2e2e_A 107 ALALDSNE--ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE-------SINMAKLLQRRSD 169 (177)
T ss_dssp HHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHhCCCc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH-------HHHHHHHhcCCCC
Confidence 99999887 589999999999999999999999999999999866554332 2345555555443
|
| >4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-08 Score=109.87 Aligned_cols=79 Identities=27% Similarity=0.616 Sum_probs=67.8
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCCEEEEEEEEEecC--
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKE-- 1530 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~-----------~~~~~~~~~Gd~V~~~Il~id~~-- 1530 (1935)
.+..+|+++.|+|+++++||+||++. .++||+|+|++.+++. ++....|++||.|+++|+++|++
T Consensus 77 ~~p~~Gev~~G~V~~v~~~G~fv~l~--~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~ 154 (180)
T 4ayb_E 77 YVPVVQEVVEGEVLQVDNYGVFVNLG--PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVT 154 (180)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC---
T ss_pred eeccCCCEEEEEEeeeccceEEEEEC--CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCC
Confidence 46789999999999999999999996 4899999999999876 45677899999999999999864
Q ss_pred --CCeeEEeccccccC
Q 000173 1531 --KRRISLGMKSSYFK 1544 (1935)
Q Consensus 1531 --~~ri~lslK~~~~~ 1544 (1935)
..||.||||+.+.+
T Consensus 155 ~~~~rI~ls~k~~gLG 170 (180)
T 4ayb_E 155 GRLPRIALTMRQPYLG 170 (180)
T ss_dssp ----CEEEECCSTTCE
T ss_pred cccCcEEEEcCCCCCC
Confidence 45999999987653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=101.41 Aligned_cols=109 Identities=10% Similarity=-0.085 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.+|.+.+++++|.+.|++++...|.+..+|+.++..++.. ++++|...|++++...|.+ ..+|..+|.++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 67888889999999999999999999999999999999999999999 9999999999999998877 68999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
+..|++++|...|+++++.+|.+.+.|.....
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999998776655443
|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A | Back alignment and structure |
|---|
Probab=98.70 E-value=5.9e-09 Score=136.52 Aligned_cols=82 Identities=33% Similarity=0.574 Sum_probs=77.5
Q ss_pred hhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1370 ~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
+..+.++++|+++.|+|++|+++|+||+|+.+++|+||+++|+|.|+.+|.+.|++||.|+|+|+++|.++++|.||+|.
T Consensus 646 ve~~~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 646 VESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp CCSSTTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSS
T ss_pred ccchhhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred Cc
Q 000173 1450 SD 1451 (1935)
Q Consensus 1450 ~~ 1451 (1935)
+.
T Consensus 726 ~~ 727 (785)
T 3bzc_A 726 SD 727 (785)
T ss_dssp CC
T ss_pred CC
Confidence 55
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.2e-07 Score=102.29 Aligned_cols=174 Identities=10% Similarity=-0.098 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----ChHHH
Q 000173 1704 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE----QNKLA 1779 (1935)
Q Consensus 1704 kAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~----~~~~A 1779 (1935)
+|...|+++.+.-+ ...|..+..++...+ +.++|...|++|++.. ....+..++.+|.. + ++++|
T Consensus 4 eA~~~~~~aa~~g~-------~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEAGD-------RRAQYYLADTWVSSG--DYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHTTC-------HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHCCC-------HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 45666777775422 235666666666667 4588888888888764 34677778888776 6 78888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH----c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHH
Q 000173 1780 DELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRS 1850 (1935)
Q Consensus 1780 ~el~~~~~k~~~~~~~vw~~~~~~l~~----~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~----~g~~e~Ar~ 1850 (1935)
.+.|++++. +..+..++.++.++.. . ++++|...|++|+...+...++..+..+|.++.. .+++++|..
T Consensus 73 ~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 73 RQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 888888865 3678888888888876 5 8888888888888765432236788888888887 778888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHh
Q 000173 1851 MFEGILSEYPKRTDLWSIYLDQEIRL-G-----DVDLIRGLFERAIS 1891 (1935)
Q Consensus 1851 ife~al~~~Pk~~dlw~~ya~~e~k~-g-----~~e~ar~lferal~ 1891 (1935)
.|++++.. |.+...+..++.++..- | +.++|...|++++.
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 88888877 55666777777777653 3 78888888888887
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=6.4e-08 Score=115.06 Aligned_cols=188 Identities=11% Similarity=-0.103 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
..|..+.+.....| ..+.|...|++|++..|. ..+|..++.+|...+++++|...|+++++..|.+..+|+.++..+
T Consensus 5 ~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGR--KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46777777777888 448888888888888775 478888888888888888888888888888888888888888888
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKH---IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1880 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~---~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e 1880 (1935)
... ++++|...|+++++..|.+.. ..+|..+. ..++...........|....++..+..+. .|+++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR--------IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH--------HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 888 888888888888887765421 02222221 12223333333345666667777666654 68889
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 000173 1881 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV-GEEERIEYVKQKAME 1928 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~-G~~e~a~~v~~rAle 1928 (1935)
+|...|++++. +.|... .+......+..+. +..+.+..+|++|.+
T Consensus 153 ~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDG-HIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGT--TTSCHH-HHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhc--cccchh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999998 666655 4555555555544 567778888887653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.9e-08 Score=102.49 Aligned_cols=110 Identities=7% Similarity=-0.106 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000173 1780 DELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1780 ~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~ 1858 (1935)
...|++++...|.+...|+.++..++.. ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++..
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--SRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3457788888888899999999999999 9999999999999999987 599999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1859 YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1859 ~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.|.+..+|+.++..+...|++++|+..|++++.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.6e-07 Score=102.77 Aligned_cols=176 Identities=7% Similarity=-0.041 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRA 1819 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ra 1819 (1935)
.+|...|++|++. .....++.++.+|...+++++|.+.|++++.. .++..|+.++.++... ++++|...|++|
T Consensus 3 ~eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKA 79 (212)
T ss_dssp -CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4578889999987 45688899999999999999999999999875 6899999999998876 799999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 000173 1820 LLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIR----LGDVDLIRGLFERA 1889 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~~----~g~~e~Ar~ife~al~~~Pk--~~dlw~~ya~~e~k----~g~~e~ar~lfera 1889 (1935)
+.. . ++..+..+|.+++. .+++++|..+|++++...|. ....+..++.++.. .++.++|..+|+++
T Consensus 80 ~~~--g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA--G--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT--T--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC--C--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 764 2 46899999999987 88999999999999998884 47899999999998 88999999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Q 000173 1890 ISLSLPPKKMKFLFKKYLEYEKSVG-----EEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1890 l~~~~~pk~~k~l~~~yl~~E~~~G-----~~e~a~~v~~rAle~ 1929 (1935)
+.. +.... ..+..-.-++...| |.+.|...|++|.+.
T Consensus 156 ~~~--~~~~~-a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 156 SSL--SRTGY-AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHT--SCTTH-HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHc--CCCHH-HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 993 21111 23333333444445 899999999999864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-06 Score=102.64 Aligned_cols=222 Identities=9% Similarity=-0.016 Sum_probs=169.9
Q ss_pred HHcCCH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCC---C-----CHHHHHHHHHHHHhcCCC-HHHHHHH
Q 000173 1697 LSMADV-EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN---P-----PEEAVVKVFQRALQYCDP-KKVHLAL 1766 (1935)
Q Consensus 1697 l~~~e~-dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~---~-----~~e~a~~vferAl~~~~~-~~v~~~l 1766 (1935)
.+.+++ ++|..+++++|...| .. ..+|.....+....+. + ..+.+...++.+++.+|. ..+|...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP-~~----ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP-DF----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT-TC----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hh----HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345555 479999999996544 22 4688765555444431 0 036788899999998886 4999999
Q ss_pred HHHHHHcCC--hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C-HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000173 1767 LGLYERTEQ--NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1842 (1935)
Q Consensus 1767 ~~i~~~~~~--~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~-~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1842 (1935)
.-++...++ ++++.+.+.+++...|.+..+|....-.+... . ++++.+.+.+++..+|.+ ..+|...+.++...
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N--~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHh
Confidence 999999884 89999999999999999999999998777766 5 699999999999999988 48999999888766
Q ss_pred --------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCch
Q 000173 1843 --------------GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-----------GDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1843 --------------g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~-----------g~~e~ar~lferal~~~~~pk 1897 (1935)
+.++++...+.+++..+|.+..+|+.+--+..+. +-++++...++.++. +.|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd 270 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPE 270 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcc
Confidence 4588999999999999999999998766665544 346788999999998 6666
Q ss_pred hHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHH
Q 000173 1898 KMKFLFKKYLEYEK---SVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~---~~G~~e~a~~v~~rAle 1928 (1935)
.. -.+...+.+.. ..|..++++..+.+.++
T Consensus 271 ~~-w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 271 NK-WCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CH-HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cc-hHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 53 33333333332 24666666666666543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=5.1e-08 Score=102.84 Aligned_cols=109 Identities=9% Similarity=-0.032 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000173 1781 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1781 el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~ 1859 (1935)
..|++++...|.....|+.++..++.. ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++..+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--ARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456677777778889999999999999 9999999999999999987 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1860 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1860 Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
|.+..+|..++..+...|+++.|...|++++.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.8e-07 Score=113.85 Aligned_cols=186 Identities=6% Similarity=-0.064 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHhcCCCH
Q 000173 1688 VWIKYMAFMLSMA---DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY----GNPPEEAVVKVFQRALQYCDPK 1760 (1935)
Q Consensus 1688 lW~~y~~~~l~~~---e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~----g~~~~e~a~~vferAl~~~~~~ 1760 (1935)
.|..++..+...+ ++++|...|++|...-+... ..|..+..++..- . +.++|...|++|+ ....
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a-----~~~~~Lg~~y~~g~~~~~--d~~~A~~~~~~aa--~g~~ 248 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA-----QRVDSVARVLGDATLGTP--DEKTAQALLEKIA--PGYP 248 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-----HHHHHHHHHHTCGGGSSC--CHHHHHHHHHHHG--GGST
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHc--CCCH
Confidence 4555555555555 55555555555554333211 1222233322111 2 2355555555554 1122
Q ss_pred HHHHHHHHH-H--HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHhCCCCChHHHH
Q 000173 1761 KVHLALLGL-Y--ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGVQAVVQRALLSLPRHKHIKFI 1832 (1935)
Q Consensus 1761 ~v~~~l~~i-~--~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-----~~e~A~~ll~ralk~~p~~~~~~~~ 1832 (1935)
..++.++.+ | ...+++++|.+.|+++... .++..++.++.++... ++++|...|++|. +.+ +..+
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~--~~A~ 321 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GRE--VAAD 321 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTC--HHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCC--HHHH
Confidence 444555554 2 2345555555555555532 3455555555555532 5555555555554 222 3455
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 000173 1833 SQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1833 ~~~a~le~~----~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e~ar~lferal~ 1891 (1935)
..+|.++.. ..++++|..+|+++... .+.+.+..++.++.. ..+.++|...|++|..
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 555544443 22555555555555432 233344444444442 2345555555555554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=7.6e-07 Score=100.07 Aligned_cols=125 Identities=8% Similarity=-0.090 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1840 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~ 1840 (1935)
.|+.++..+...+++++|.+.|++++ +.+..+|+.++..+... ++++|...|++++...|.. ..+|..+|.+++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHH
Confidence 35677889999999999999999986 44889999999999999 9999999999999999877 689999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1841 KNGVADRGRSMFEGILSEYPKRT----------------DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1841 ~~g~~e~Ar~ife~al~~~Pk~~----------------dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..|++++|...|+++++..|.+. .+|..++..+.+.|+++.|...|++++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999888766 8999999999999999999999999998
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.65 E-value=9.7e-07 Score=105.29 Aligned_cols=165 Identities=6% Similarity=-0.060 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC----
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---- 1793 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---- 1793 (1935)
...|...+......++ .+.|.+.|+++++..+.. ..+..++.+|...+++++|.+.|++++......
T Consensus 75 ~~~l~~~~~~~~~~~~--y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKR--YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHhhh--HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 4456677777788884 599999999999876542 445567778888899999999999999765432
Q ss_pred --HHHHHHHHHHHHHc-CHHHHHHHHHHHH---HhCCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 000173 1794 --CKVWLRRVQRLLKQ-QQEGVQAVVQRAL---LSLPRHKH--IKFISQTAILEFKNGVADRGRSMFEGILSEYPK---- 1861 (1935)
Q Consensus 1794 --~~vw~~~~~~l~~~-~~e~A~~ll~ral---k~~p~~~~--~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk---- 1861 (1935)
..+|..++..+... ++++|..+|++|+ +..|.... +.++..+|.+++..|++++|...|++++...++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 56889999999999 9999999999999 55655432 258999999999999999999999999987543
Q ss_pred --CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 000173 1862 --RTDLWSIYLDQEIRLGDVDLI-RGLFERAIS 1891 (1935)
Q Consensus 1862 --~~dlw~~ya~~e~k~g~~e~a-r~lferal~ 1891 (1935)
...+|...+..+.+.|++++| ...|++|+.
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 266899999999999999999 888999886
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-07 Score=93.90 Aligned_cols=112 Identities=7% Similarity=-0.051 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
....|...+..++.. ++++|...|++++...|.. ..+|..+|..++..|++++|...|+++++.+|.+...|..++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 456899999999999 9999999999999999987 5999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHH
Q 000173 1872 QEIRLGDVDLIRGLFERAISLSLP------PKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1872 ~e~k~g~~e~ar~lferal~~~~~------pk~~k~l~~~yl~~ 1909 (1935)
.+...|++++|...|++++. +. |... .++..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~-~~~~~l~~~ 121 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART--KDAEVNNGSSAR-EIDQLYYKA 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHH-HHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH--hCcccCCchhHH-HHHHHHHHH
Confidence 99999999999999999998 55 5544 345444433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-07 Score=109.87 Aligned_cols=198 Identities=7% Similarity=-0.125 Sum_probs=158.0
Q ss_pred HcCCHHHHHHHHHHHHHhccccchhhHHHHHHHH-------HHHHHHcCCCCHHHHHHHHHHHHhcCCC-----------
Q 000173 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAY-------FNLENEYGNPPEEAVVKVFQRALQYCDP----------- 1759 (1935)
Q Consensus 1698 ~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ay-------l~le~~~g~~~~e~a~~vferAl~~~~~----------- 1759 (1935)
+.++.+.|+..|.+|+...|.. ...|+.+ .......+.. ..+...+.+++...|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~-----~Daw~g~~a~g~~~~~~L~~~~r~--~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESA-----CDAWIGRIRCGDTDRVTLFRAWYS--RRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHTTCCCHHHHHHHHHT--GGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred cCCCHHHHHHHHHHHHHhChhh-----hHHHHhHHHccCCcHHHHHHHHHH--HHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 4689999999999999766532 4699988 4444444422 5566778888884431
Q ss_pred -----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1760 -----------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1760 -----------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
..+++.|+.++...|+|++|.++|..+....|... .++.++..+++. ++++|...|+.++...+...
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 47889999999999999999999999987777667 888888888888 99999999997765321111
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEY--PK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1904 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~--Pk-~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~ 1904 (1935)
...+++..+..+...|++++|...|++++... |. ..+.|+.++..+.++|+.++|+.+|++++. ..|. . ..|.
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~-~-~~~~ 245 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE-P-KVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC-H-HHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-H-HHHH
Confidence 13589999999999999999999999998654 66 678999999999999999999999999999 6665 4 4555
Q ss_pred HHH
Q 000173 1905 KYL 1907 (1935)
Q Consensus 1905 ~yl 1907 (1935)
...
T Consensus 246 aL~ 248 (282)
T 4f3v_A 246 ALK 248 (282)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-07 Score=94.28 Aligned_cols=119 Identities=10% Similarity=-0.030 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1869 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~y 1869 (1935)
+.....|+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45678899999999999 9999999999999998876 68999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcC
Q 000173 1870 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG 1914 (1935)
Q Consensus 1870 a~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G 1914 (1935)
+..+...|+++.|+..|++++. ..|... ..|..+.......|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~--~~p~~~-~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALD--LDSSCK-EAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCGGGT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH--hCCCch-HHHHHHHHHHHHhc
Confidence 9999999999999999999998 666665 46666666555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-06 Score=111.11 Aligned_cols=170 Identities=12% Similarity=0.017 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---Hc-CHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERT----EQNKLADELLYKMIKKFKHSCKVWLRRVQRLL---KQ-QQEGVQA 1814 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~----~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~---~~-~~e~A~~ 1814 (1935)
++|...|++|++..+.. ..|+.++.+|... .++++|.+.|+++. +.++..|+.++.+++ .. ++++|..
T Consensus 196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 66777777777776654 5566777777554 57777777777776 567777777777644 22 7778888
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 000173 1815 VVQRALLSLPRHKHIKFISQTAILEFKNG-----VADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGL 1885 (1935)
Q Consensus 1815 ll~ralk~~p~~~~~~~~~~~a~le~~~g-----~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e~ar~l 1885 (1935)
.|++|+... +...+..+|.+++ .| ++++|...|+++. |.+...++.++.++.. ..++++|...
T Consensus 273 ~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 273 YLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 887777542 3577777777776 45 7788888888777 7777777777777665 3477788888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 000173 1886 FERAISLSLPPKKMKFLFKKYLEYEKSVG---EEERIEYVKQKAME 1928 (1935)
Q Consensus 1886 feral~~~~~pk~~k~l~~~yl~~E~~~G---~~e~a~~v~~rAle 1928 (1935)
|+++.....+. + .+..-.-++...| |...|...|++|.+
T Consensus 345 ~~~Aa~~g~~~--A--~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 345 LLTAARNGQNS--A--DFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHTTTCTT--H--HHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHhhChHH--H--HHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 88877733322 2 2222222232222 67777777777754
|
| >1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-09 Score=141.89 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=38.6
Q ss_pred cccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCcc----CcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000173 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA----VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1935)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~l----s~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~ 832 (1935)
.++++|+++.|+|++|++||+||++.+|+.||+|+|++ +++++.++++.|++||.|+|+|+++|+ ++|+.||+|+
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~ 741 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPVI 741 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-SCC-------
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEec
Confidence 45778999999999999999999999999999999999 999999999999999999999999998 9999999997
Q ss_pred ccc
Q 000173 833 SCC 835 (1935)
Q Consensus 833 ~~~ 835 (1935)
...
T Consensus 742 ~~~ 744 (757)
T 1e3p_A 742 EGE 744 (757)
T ss_dssp ---
T ss_pred CCC
Confidence 754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.8e-07 Score=102.95 Aligned_cols=128 Identities=11% Similarity=-0.014 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHc-CHHHHHHHHHHHHHhC
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC----------------KVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~----------------~vw~~~~~~l~~~-~~e~A~~ll~ralk~~ 1823 (1935)
..|..++..+...+++++|.+.|.+++...+..+ .+|..++..++.. ++++|...|+++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4566666677777777777777777777666554 8899999999988 9999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 000173 1824 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR-GLFERAI 1890 (1935)
Q Consensus 1824 p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar-~lferal 1890 (1935)
|.. ..+|..+|.+++..|++++|...|+++++..|.+..+|..++.++...++.+++. ..|.++.
T Consensus 119 p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 KNN--VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred ccc--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 876 5899999999999999999999999999999999999999998888777666554 4444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-06 Score=104.51 Aligned_cols=232 Identities=10% Similarity=-0.012 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHH
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLA 1765 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~ 1765 (1935)
.+|-.+-+........++|.++++++|...|- . ..+|.....+...++. ..+++.+.++++++.+|.. .+|..
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~----ytaWn~R~~iL~~l~~-~l~eEL~~~~~~L~~nPKny~aW~h 128 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPA-H----YTVWQYRFSLLTSLNK-SLEDELRLMNEFAVQNLKSYQVWHH 128 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-C----HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-h----HHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34443333333444557899999999976552 2 4699988888777884 2689999999999999875 99999
Q ss_pred HHHHHHHc-C-ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHH--------HHHHHHHHHHHhCCCCChHHHHHH
Q 000173 1766 LLGLYERT-E-QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE--------GVQAVVQRALLSLPRHKHIKFISQ 1834 (1935)
Q Consensus 1766 l~~i~~~~-~-~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e--------~A~~ll~ralk~~p~~~~~~~~~~ 1834 (1935)
...++.+. + +++++.+.+.+++...+.+..+|....-.+... .++ ++.+.+.+++..+|.+ ..+|..
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N--~SAW~~ 206 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN--NSAWGW 206 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC--HHHHHH
Confidence 99999887 7 899999999999999999999999887766665 444 8999999999999988 489999
Q ss_pred HHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-----------------HHHHHHHHH
Q 000173 1835 TAILEFKNGV-------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-----------------IRGLFERAI 1890 (1935)
Q Consensus 1835 ~a~le~~~g~-------~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~-----------------ar~lferal 1890 (1935)
.+.++...+. ++++...+.+++..+|.+..+|+.+.-++.+.|.... .-.+-+-++
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 9999988886 7899999999999999999999988888877665410 112223332
Q ss_pred hc---C----CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1891 SL---S----LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1891 ~~---~----~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
.. . ..++.. ..+.-.++.+.+.|+.++|..+|+...
T Consensus 287 ~~~~~~~~~~~~~~s~-~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVP-LALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CCCC-CCCSSCCSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccccccCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 21 1 012222 455555566667899988888888765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.61 E-value=3.4e-08 Score=121.84 Aligned_cols=216 Identities=15% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+..+|...+++. +.+.+|..++..+++.+++++|.+.|.++-.. ..|...+.-...+|.+ +.|
T Consensus 18 ~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~----------~~y~~V~~~ae~~g~~--EeA 80 (449)
T 1b89_A 18 NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP----------SSYMEVVQAANTSGNW--EEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH----------HHHHHHHHHHHhCCCH--HHH
Confidence 366777777777 33469999999999999999999999886421 2466666666667854 888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1747 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1747 ~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
...++.+.+..+...+...++.+|.+.|++.++.++|+. .+...|...+..+... ++++|+.+|.++
T Consensus 81 i~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 81 VKYLQMARKKARESYVETELIFALAKTNRLAELEEFING------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC------C----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 888888887654456677777777777777777766642 2335777777777777 777777777765
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
.-|..+|..+.+.|+++.|...|+++ .++..|......+...|+++.|...... +. ..|... . .
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~--~~ad~l---~-~ 212 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV--VHADEL---E-E 212 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TT--TCHHHH---H-H
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HH--hCHhhH---H-H
Confidence 24677777777777777777777777 3566666666666666555555443332 11 232221 1 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
.+.++.+.|..+++..+++.|+
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHh
Confidence 3444455555555555555553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-06 Score=103.71 Aligned_cols=176 Identities=11% Similarity=-0.009 Sum_probs=138.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000173 1681 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1759 (1935)
Q Consensus 1681 ~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl-~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~ 1759 (1935)
.+|.....|...+..+...+++++|.+.++++++..+...+.... ..+..+..++...| ..+.|...|++|++....
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHTTCCC
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhc
Confidence 345666778888889999999999999999999765542222112 22333445556667 459999999999976432
Q ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh---cCCCH----HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1760 -------KKVHLALLGLYERTEQNKLADELLYKMIKK---FKHSC----KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1760 -------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~---~~~~~----~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
..+|..++.+|...+++++|.+.|+++++. .+... .+|++++..+... ++++|...|++|+...+
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 268999999999999999999999999954 44432 6899999999999 99999999999998754
Q ss_pred CC----ChHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 000173 1825 RH----KHIKFISQTAILEFKNGVADRG-RSMFEGILSE 1858 (1935)
Q Consensus 1825 ~~----~~~~~~~~~a~le~~~g~~e~A-r~ife~al~~ 1858 (1935)
.. ....+|...|.+++..|++++| ...|++++..
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 31 1257899999999999999999 8889999864
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.7e-07 Score=94.71 Aligned_cols=99 Identities=14% Similarity=-0.051 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++..+...+++++|...|++++...|.+..+|+.++.++... ++++|...|++++...|.. ..+|..+|.++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555544 5555555555555554443 34555555555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 000173 1840 FKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
+..|++++|...|++++...|.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 5555555555555555554444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-07 Score=95.28 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
|+.++..+.+.|++++|...|+++++..|.+..+|+.++..+... ++++|...|++++...|.+ ..+|..+|.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555555555 5555555555555555544 3455555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 000173 1842 NGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
.|++++|...|+++++.+|..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 555555555555555555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.5e-07 Score=95.84 Aligned_cols=112 Identities=11% Similarity=-0.074 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
..|..++..+...+++++|.+.|++++...+.+ ..+|+.++..+... ++++|...|+++++..|.. ..+|..+|
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a 106 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHHHH
Confidence 666677777777777777777777777666655 67777777777777 7777777777777776655 46777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
.+++..|++++|...|++++..+|.+.++|..+..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777777777777777777777777777766666543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=8.7e-07 Score=88.41 Aligned_cols=113 Identities=11% Similarity=0.004 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
....|+.++..+... ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++...|.+..+|..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 456889999999999 9999999999999999876 6899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1872 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1872 ~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
.+...|+++.|+..|++++. ..|... ..|..+..++
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK--HEANNP-QLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TCTTCH-HHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH--cCCCCH-HHHHHHHHhh
Confidence 99999999999999999998 666666 4666655543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-07 Score=121.63 Aligned_cols=128 Identities=10% Similarity=0.010 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---------------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---------------~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
..|..++..|.+.+++++|...|++++...+.. ..+|++++.++++. ++++|...|++|+...|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 567777788888888888888888888887776 78999999999999 99999999999999998
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR-GLFERAI 1890 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar-~lferal 1890 (1935)
.+ +.+|..+|.+++..|++++|+..|+++++.+|.+..+|..++.++.+.++.+++. .+|.+++
T Consensus 349 ~~--~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 AN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 6999999999999999999999999999999999999999999999988887654 4455444
|
| >3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A | Back alignment and structure |
|---|
Probab=98.58 E-value=8.3e-08 Score=104.89 Aligned_cols=72 Identities=21% Similarity=0.384 Sum_probs=66.1
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecC---------ceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEE
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENT---------NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~---------~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~l 1536 (1935)
.+ |++|.|+|++|.++|+||+|..- ++.|++|+|++++.+++++.+.|++||.|+|+|++ +++.|
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~L 129 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLRL 129 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTEE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEEE
Confidence 46 99999999999999999999751 68999999999999999999999999999999997 89999
Q ss_pred ecccccc
Q 000173 1537 GMKSSYF 1543 (1935)
Q Consensus 1537 slK~~~~ 1543 (1935)
|+|....
T Consensus 130 S~k~~~l 136 (179)
T 3m7n_A 130 STKEEEM 136 (179)
T ss_dssp ECCSTTC
T ss_pred EEecCCC
Confidence 9988544
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.2e-09 Score=139.57 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=0.8
Q ss_pred hhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc-cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1371 ~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~-~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
+.+.++++|++|.|+|++|+++|+||+|+.+++|+||+++|+|.| +.+|.+.|++||.|+|+|++||.++++|.||+|.
T Consensus 898 et~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 898 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccHHHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 345789999999999999999999999999999999999999998 8999999999999999999999999999999998
Q ss_pred Ccc
Q 000173 1450 SDS 1452 (1935)
Q Consensus 1450 ~~~ 1452 (1935)
+..
T Consensus 978 ~dl 980 (1030)
T 3psf_A 978 HDV 980 (1030)
T ss_dssp ---
T ss_pred HHh
Confidence 654
|
| >2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.4e-08 Score=94.02 Aligned_cols=85 Identities=31% Similarity=0.402 Sum_probs=67.4
Q ss_pred CCCCCEEEEEEEEE---eeceEEEEeCC-CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1376 LSPNMIVQGYVKNV---TSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v---~~~G~fV~l~~-~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
...++.++|+|+.. ..+| ||.... +.++|||+++|.+...
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~----------------------------------- 54 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA----------------------------------- 54 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC-----------------------------------
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc-----------------------------------
Confidence 34677899999988 4478 887654 5999999999987521
Q ss_pred ccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc
Q 000173 1452 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1507 (1935)
Q Consensus 1452 ~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~ 1507 (1935)
....+++|++|++.|+++.+||+||+|.+ +++||||+|+|+|.++
T Consensus 55 ----------~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~-~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 55 ----------VRGNPQQGDRVEGKIKSITDFGIFIGLDG-GIDGLVHLSDISWAQA 99 (101)
T ss_dssp ----------CCCCCCTTCEEEEEEEECCSEEEEECTTS-CEEEEEEEEEEEECCC
T ss_pred ----------cccCCCCCCEEEEEEEEeCCcEEEEEcCC-CceEEEEHHHCccCcC
Confidence 02367899999999999999999999976 7999999999998865
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=88.74 Aligned_cols=119 Identities=13% Similarity=0.020 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000173 1792 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1870 (1935)
Q Consensus 1792 ~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya 1870 (1935)
.....|+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN--AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4567899999999999 9999999999999999876 689999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000173 1871 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1915 (1935)
Q Consensus 1871 ~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~ 1915 (1935)
.++...|+++.|...|++++. ..|... ..|..+.......|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~--~~p~~~-~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALE--LDPDNE-TYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHh--cCccch-HHHHHHHHHHHHHhc
Confidence 999999999999999999999 666665 567777666665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=7.2e-07 Score=92.52 Aligned_cols=104 Identities=14% Similarity=0.076 Sum_probs=97.4
Q ss_pred cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 000173 1790 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1868 (1935)
Q Consensus 1790 ~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ 1868 (1935)
.+.....|+.++..++.. ++++|...|++++...|.. ..+|..+|.+++..|++++|...|+++++.+|.+..+|..
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 356789999999999999 9999999999999999887 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000173 1869 YLDQEIRLGDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1869 ya~~e~k~g~~e~ar~lferal~~~~~pk 1897 (1935)
++..+...|+++.|...|++++. +.|.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~--~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS--LAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--HChh
Confidence 99999999999999999999998 5444
|
| >1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ... | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-07 Score=103.82 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=62.0
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCc----------ccccCCCCEEEEEEEEEecCCC--
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI----------ETIYRAGEKVKVKILKVDKEKR-- 1532 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~----------~~~~~~Gd~V~~~Il~id~~~~-- 1532 (1935)
...+|+++.|+|+++++||+||+|.+ .+||+|+|++++.+.-+. .+.|++||.|+++|+++|.+.+
T Consensus 80 ~~~~Gev~~G~V~~v~~fG~FV~l~~--~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~ 157 (171)
T 1y14_B 80 KPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (171)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEE
T ss_pred cCCCCCEEEEEEEEEecCEEEEEecC--eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCCCc
Confidence 45699999999999999999999964 999999999986543111 2679999999999999998874
Q ss_pred -eeEEecccccc
Q 000173 1533 -RISLGMKSSYF 1543 (1935)
Q Consensus 1533 -ri~lslK~~~~ 1543 (1935)
+|. ||+..+.
T Consensus 158 ~~ig-sm~~~~L 168 (171)
T 1y14_B 158 HAIG-SIKEDYL 168 (171)
T ss_dssp EEEE-ECCSTTC
T ss_pred EEEE-EcCCCCC
Confidence 555 7766543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=106.17 Aligned_cols=150 Identities=11% Similarity=-0.020 Sum_probs=116.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh--------------HHHH
Q 000173 1768 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH--------------IKFI 1832 (1935)
Q Consensus 1768 ~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~--------------~~~~ 1832 (1935)
......+.+++|.+.|.............|...+..++.. ++++|...|++++...|.... ..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344456666666666655544445677899999999999 999999999999999887641 3799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
..+|.+++..|++++|...|+++++..|.+..+|..++..+...|+++.|...|++++. +.|... .+|..+......
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~ 168 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNL-DIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 666665 567666666655
Q ss_pred cCCHHHHH
Q 000173 1913 VGEEERIE 1920 (1935)
Q Consensus 1913 ~G~~e~a~ 1920 (1935)
.++.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 55544433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.55 E-value=9.1e-08 Score=122.70 Aligned_cols=168 Identities=11% Similarity=0.019 Sum_probs=131.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
|..++..|.+.+++++|.+.|+++++..|....+|..++..+.+. ++++|.+.|++|++..|.. ..+|..+|.+++.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Confidence 444556777889999999999999999999999999999999999 9999999999999998876 6899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCC------Cch--hHH
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ--EIRLGDVDLIRGLFE-----------RAISLSL------PPK--KMK 1900 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~--e~k~g~~e~ar~lfe-----------ral~~~~------~pk--~~k 1900 (1935)
.|++++|...|+++++..|.+.++|..++.. +.+.|++++|..+|+ +++.... .+. -..
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl 166 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTI 166 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccH
Confidence 9999999999999999999998898888887 778899999999999 6665210 011 011
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHh
Q 000173 1901 FLFKKYLEYEKSVG--EEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1901 ~l~~~yl~~E~~~G--~~e~a~~v~~rAle~v~~ 1932 (1935)
..+..++......+ ..+.+..++.+|.+.+..
T Consensus 167 ~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 167 SFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 34455555444433 467788899999888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.4e-07 Score=96.70 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000173 1792 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1870 (1935)
Q Consensus 1792 ~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya 1870 (1935)
.....|+.++..++.. ++++|...|+++++..|.+ ..+|..+|.+++..|++++|...|++++..+|.+..+|..++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN--PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3567899999999999 9999999999999999887 689999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1871 DQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1871 ~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
..+...|++++|...|++++. +.|...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~--~~p~~~ 113 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE--AEGNGG 113 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HHSSSC
T ss_pred HHHHHccCHHHHHHHHHHHHH--hCCCch
Confidence 999999999999999999998 555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-06 Score=100.41 Aligned_cols=202 Identities=11% Similarity=0.081 Sum_probs=146.9
Q ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000173 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1750 (1935)
Q Consensus 1671 a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vf 1750 (1935)
+...|++++...+.+...+...+..+...|++++|+.++.+++...+. ...+..+...+.++...| ..+.|++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~---~~~lea~~l~vqi~L~~~--r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA---EGTTELLLLAIEVALLNN--NVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS---TTHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---cCcHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 678888888766666777788888888899999999999998754331 234567888888888999 569999999
Q ss_pred HHHHhcCC-----CHHHHHHHHHH--HHH--cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1751 QRALQYCD-----PKKVHLALLGL--YER--TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1751 erAl~~~~-----~~~v~~~l~~i--~~~--~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
+++.+..| ...+...++.. ... .+++.+|..+|+++...+|+.......|. .++.+ ++++|++.++.++
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 99988887 34555555443 333 34899999999999988876223222233 56666 9999999999777
Q ss_pred HhCCC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1821 LSLPR--------HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1821 k~~p~--------~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..|. ..++.++.+.+.+....|+ .|..+++++.+..|++.-+- + +......|++++.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~----d-------~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK----H-------HQEIDAKFDELVR 304 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH----H-------HHHHHHHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH----H-------HHHHHHHHHHHHH
Confidence 66432 2346888888888888887 88899999999999985442 2 2334456777765
|
| >1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-07 Score=103.65 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=69.7
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-----------CccccCCCCcEEEEEEEEEeCCCC--
Q 000173 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLSK-- 1441 (1935)
Q Consensus 1375 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~-----------~~~~~f~~G~~V~~kVl~vd~~~~-- 1441 (1935)
...+|+++.|+|++++++|+||+|++ ++|++|++++++.++. ++.+.|++||.|+++|+++|.+.+
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p 156 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERK 156 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC---
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 35689999999999999999999985 9999999999988765 788899999999999999998755
Q ss_pred ---EEEEEEecCcccc
Q 000173 1442 ---RVEVTLKTSDSRT 1454 (1935)
Q Consensus 1442 ---ri~lSlk~~~~~~ 1454 (1935)
+|.||++.....+
T Consensus 157 ~~~~I~lS~k~~~LG~ 172 (187)
T 1go3_E 157 RGSKIALTMRQPYLGK 172 (187)
T ss_dssp --CEEEEECCSTTCEE
T ss_pred CccEEEEEEcCCCCCc
Confidence 9999999865543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-06 Score=89.23 Aligned_cols=112 Identities=7% Similarity=0.091 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSC---KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAI 1837 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~---~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~ 1837 (1935)
++.++..+...+++++|.+.|+++++.+|.+. .+|+.++..+... ++++|...|+++++..|.+.. ..++..+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 55667777888888888888888888887776 7888888888888 888888888888888876632 367788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1838 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1838 le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
+++..|++++|...|++++..+|.+...+.....+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 8888888888888888888888887776665555443
|
| >2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=9.6e-08 Score=106.74 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=64.5
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCc----------ccccCCCCEEEEEEEEEecCCC--
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI----------ETIYRAGEKVKVKILKVDKEKR-- 1532 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~----------~~~~~~Gd~V~~~Il~id~~~~-- 1532 (1935)
..++|+++.|+|+++++||+||+|.+ ++||+|+|+|++.+.-+. .+.|++||.|+++|+++|.+.+
T Consensus 80 ~p~vGev~~G~V~~vt~fG~FVelg~--~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i 157 (215)
T 2b8k_G 80 KPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (215)
T ss_dssp CCCTTEEEEEEEEEEETTEEEEECTT--SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEE
T ss_pred ccCCCCEEEEEEEEEecceEEEEecC--cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCcc
Confidence 45899999999999999999999964 899999999987644222 2679999999999999998875
Q ss_pred -eeEEeccccccC
Q 000173 1533 -RISLGMKSSYFK 1544 (1935)
Q Consensus 1533 -ri~lslK~~~~~ 1544 (1935)
+|. |||..+.+
T Consensus 158 ~~Ig-Smk~~~LG 169 (215)
T 2b8k_G 158 HAIG-SIKEDYLG 169 (215)
T ss_dssp EEEE-ECCSTTCE
T ss_pred EEEE-EcCCCCCC
Confidence 777 88876553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-06 Score=86.72 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
...|+.++..+... ++++|.+.|++++...|.. ..+|..+|..++..|++++|..+|++++...|.+..+|..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 67899999999999 9999999999999998876 58999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1873 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1873 e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
+...|++++|..+|++++. ..|... ..+..+....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE--LDPNNA-EAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH--hCCCcH-HHHHHHHHHH
Confidence 9999999999999999998 556555 3444444433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-06 Score=102.72 Aligned_cols=155 Identities=7% Similarity=-0.064 Sum_probs=72.2
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHH
Q 000173 1735 ENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRV 1801 (1935)
Q Consensus 1735 e~~~g~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~ 1801 (1935)
....+ ..+.|...|+++++..+.. ..+..++.+|...+++++|.+.|++++...... ..+|..++
T Consensus 85 ~~~~~--~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 85 LCKQK--RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHTT--CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHHHh--hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 34445 2355555555555543321 112224444444455555555555555532111 22445555
Q ss_pred HHHHHc-CHHHHHHHHHHHHHhCC---CC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 000173 1802 QRLLKQ-QQEGVQAVVQRALLSLP---RH--KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------TDLWSIY 1869 (1935)
Q Consensus 1802 ~~l~~~-~~e~A~~ll~ralk~~p---~~--~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~------~dlw~~y 1869 (1935)
.++... ++++|...|++|++... .. ....++..+|.+++..|++++|...|++++...+.. ..+|...
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 242 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 555555 55555555555553211 11 112345555555555555555555555555443221 3445555
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHh
Q 000173 1870 LDQEIRLGD-VDLIRGLFERAIS 1891 (1935)
Q Consensus 1870 a~~e~k~g~-~e~ar~lferal~ 1891 (1935)
+..+.+.|+ +++|...|++|+.
T Consensus 243 g~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 243 GECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHH
Confidence 555555552 3555555555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.2e-06 Score=98.99 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc-CCHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN-----GVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRL-GDVD 1880 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~-----g~~e~Ar~ife~al~~~Pk~-~dlw~~ya~~e~k~-g~~e 1880 (1935)
....|+..++||++..|...+-.+|..+|.+|... |+.++|+++|+++|+.+|.. .+.+..|+++++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 47889999999999999965568999999999984 99999999999999999974 99999999999885 9999
Q ss_pred HHHHHHHHHHhcCCCch
Q 000173 1881 LIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk 1897 (1935)
.++.+|++|+. .+|.
T Consensus 258 ~a~~~L~kAL~--a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALA--IDPE 272 (301)
T ss_dssp HHHHHHHHHHH--CCGG
T ss_pred HHHHHHHHHHc--CCCC
Confidence 99999999999 6655
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-06 Score=90.59 Aligned_cols=107 Identities=12% Similarity=0.023 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-----HHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-----IKFISQ 1834 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-----~~~~~~ 1834 (1935)
..|..+++.|.+.+++++|.+.|++++...|....+|.+++..++.. ++++|.+.|++|++..|.... ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667777888888888888888888888888888888888888888 888888888888877655321 246777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 000173 1835 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1868 (1935)
Q Consensus 1835 ~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ 1868 (1935)
.|.++...|++++|...|+++|...|+ .++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHH
Confidence 777777888888888888888877765 344433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-07 Score=121.36 Aligned_cols=148 Identities=9% Similarity=-0.001 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-------------HHHHHHHHHHHHH
Q 000173 1776 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------IKFISQTAILEFK 1841 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-------------~~~~~~~a~le~~ 1841 (1935)
+++|.+.|+.++...+.....|..++..+++. ++++|...|++|++..|.... ..+|..+|.++++
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555545556778899999999999 999999999999999988731 5899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH-
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE- 1920 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~- 1920 (1935)
.|++++|...|++++..+|++..+|+.++..+...|++++|+..|++|+. +.|... ..|..+.......|+.+.+.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~-~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNK-AARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 777776 56777777777777665543
Q ss_pred HHHHHH
Q 000173 1921 YVKQKA 1926 (1935)
Q Consensus 1921 ~v~~rA 1926 (1935)
.+|.++
T Consensus 407 ~~~~~~ 412 (457)
T 1kt0_A 407 RIYANM 412 (457)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.4e-07 Score=92.90 Aligned_cols=119 Identities=15% Similarity=0.072 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1868 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ 1868 (1935)
+.....|+..+..++.. ++++|...|++++...|... ...+|..+|..++..|++++|...|++++..+|.+..+|..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 56789999999999999 99999999999999988641 15899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1869 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1869 ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
++..+...|++++|...|++++. +.|... .+|..+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS--LEPKNK-VFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSCH-HHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCcH-HHHHHHHHHHhh
Confidence 99999999999999999999999 666666 577766666543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-06 Score=103.65 Aligned_cols=167 Identities=11% Similarity=0.030 Sum_probs=130.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHH
Q 000173 1691 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA-YFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKV 1762 (1935)
Q Consensus 1691 ~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~a-yl~le~~~g~~~~e~a~~vferAl~~~~~-------~~v 1762 (1935)
..+..+...+++++|...++++++..+...+......|.. +..++...+ ..+.|...|++|++.... ..+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3466778999999999999999975544333222233443 455555556 459999999999986432 157
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC----hHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFK-------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIK 1830 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~-------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~----~~~ 1830 (1935)
|..++.+|...|++++|.+.|+++++.+. ....+|++++..+... ++++|...|++|+...+... ...
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999999999999999999996442 2356889999999999 99999999999998764431 257
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 000173 1831 FISQTAILEFKNGV-ADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~-~e~Ar~ife~al~~~ 1859 (1935)
+|...|..++..|+ +++|...|++++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999999994 699999999998653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=6.7e-07 Score=91.68 Aligned_cols=100 Identities=7% Similarity=-0.034 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
..|+..+..+++. ++++|...|+++++..|.+ ..+|..+|.++...|++++|...|+++++.+|.+...|..++..+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3578889999999 9999999999999999987 699999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchh
Q 000173 1874 IRLGDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1874 ~k~g~~e~ar~lferal~~~~~pk~ 1898 (1935)
...|++++|+..|++++. ..|..
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~P~~ 118 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL--SQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHH--hCcCC
Confidence 999999999999999998 65543
|
| >4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-08 Score=131.63 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++++|+++.|+|++|.++|+||+|.++++|+||+++++|.++.++.+.|++||.|+++|+++|+ ++||.||+|.....
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~~~ 711 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVDQE 711 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeecccC
Confidence 57899999999999999999999999999999999999999999999999999999999999997 89999999998766
Q ss_pred cc
Q 000173 1454 TA 1455 (1935)
Q Consensus 1454 ~~ 1455 (1935)
++
T Consensus 712 ~G 713 (726)
T 4aid_A 712 TG 713 (726)
T ss_dssp --
T ss_pred cc
Confidence 54
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=8e-07 Score=95.73 Aligned_cols=113 Identities=10% Similarity=-0.044 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKK------------------FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~------------------~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
..|...++.+.+.+++++|...|.+++.. .+....+|++++.+++.. ++++|...|++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 55677777888888888888888888877 455667888888888888 88888888888888
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-DLWSIYLDQEIR 1875 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~-dlw~~ya~~e~k 1875 (1935)
..|.+ +.+|...|..++..|++++|...|++++..+|.+. .++..+..+..+
T Consensus 92 ~~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 92 REETN--EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred cCCcc--hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 88776 58888888888888888888888888888888887 556555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=89.43 Aligned_cols=114 Identities=10% Similarity=-0.015 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-h----HHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-H----IKFISQ 1834 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~----~~~~~~ 1834 (1935)
..|..++.++...+++++|...|++++...+.+..+|+.++..+... ++++|...|++++...|... . ..+|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 46777777888888888888888888888777888888888888777 88888888888887765431 1 467778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000173 1835 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1875 (1935)
Q Consensus 1835 ~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k 1875 (1935)
+|..++..|++++|...|++++...| +.++|..+..+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 88888888888888888888888777 46666666665543
|
| >2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-07 Score=102.05 Aligned_cols=76 Identities=16% Similarity=0.338 Sum_probs=62.5
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccC------------cccccCCCCEEEEEEEEEecCCC
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN------------IETIYRAGEKVKVKILKVDKEKR 1532 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~------------~~~~~~~Gd~V~~~Il~id~~~~ 1532 (1935)
...+|+++.|+|+++++||+||+|. .++||+|+|++++.+.-+ ....|++||.|+++|+++|.+.+
T Consensus 78 ~~~~Gev~~G~V~~v~~fG~fV~l~--~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (172)
T 2c35_B 78 RPFKGEVVDAVVTQVNKVGLFTEIG--PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKN 155 (172)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEET--TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETT
T ss_pred eCCCCCEEEEEEEEEeCCEEEEEEC--CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCC
Confidence 3469999999999999999999995 477999999998653311 14579999999999999998866
Q ss_pred ---eeEEecccccc
Q 000173 1533 ---RISLGMKSSYF 1543 (1935)
Q Consensus 1533 ---ri~lslK~~~~ 1543 (1935)
+|. |||..+.
T Consensus 156 ~~~~ig-sm~~~~L 168 (172)
T 2c35_B 156 DIFAIG-SLMDDYL 168 (172)
T ss_dssp EEEEEE-ECCSTTC
T ss_pred CcEEEE-EecCCCC
Confidence 666 8877544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-07 Score=115.29 Aligned_cols=147 Identities=10% Similarity=-0.001 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
...|..+.+.+...+++ +.|...|++|++..|....|.. .+++.++...+ ...+|++++.++
T Consensus 179 a~~~~~~g~~~~~~g~~--~~A~~~y~~Al~~~p~~~~~~~-------~~~~~~~~~~l---------~~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKL--EEAMQQYEMAIAYMGDDFMFQL-------YGKYQDMALAV---------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCC--HHHHHHHHHHHHHSCHHHHHTC-------CHHHHHHHHHH---------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhccchhhhh-------cccHHHHHHHH---------HHHHHHHHHHHH
Confidence 46788888888888866 9999999999999886543221 22223332222 124889999999
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE-IRLGDVDLI 1882 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e-~k~g~~e~a 1882 (1935)
+.. ++++|...|+++++..|.+ ..+|..+|..++..|++++|+..|+++++..|.+..+|..+..+. ...+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKN--PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 988 9999999999999998876 689999999999999999999999999999999999998888874 455677888
Q ss_pred HHHHHHHHh
Q 000173 1883 RGLFERAIS 1891 (1935)
Q Consensus 1883 r~lferal~ 1891 (1935)
+.+|.+++.
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 899999887
|
| >2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-07 Score=103.99 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=71.2
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeC--------CCcEEEEECccCCCcccC--CccccCCCCcEEEEEEEEEeCCCCEEE
Q 000173 1375 DLSPNMIVQGYVKNVTSKGCFIMLS--------RKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1935)
Q Consensus 1375 ~lk~G~~v~G~V~~v~~~G~fV~l~--------~~v~g~V~~s~lsd~~~~--~~~~~f~~G~~V~~kVl~vd~~~~ri~ 1444 (1935)
.+++|++|.|+|++++++|+||+|+ .+.+|+||++++++.+.. ++.+.|++||.|.++|++++..++++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 4789999999999999999999974 578999999999999888 899999999999999999997778999
Q ss_pred EEEecCcc
Q 000173 1445 VTLKTSDS 1452 (1935)
Q Consensus 1445 lSlk~~~~ 1452 (1935)
||+|....
T Consensus 158 LS~k~~~l 165 (209)
T 2nn6_I 158 LTTAENEL 165 (209)
T ss_dssp EECCSSSC
T ss_pred EEEecCCC
Confidence 99988654
|
| >2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-07 Score=107.45 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=68.5
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcc----cccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED----HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~----~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
..++||+|.|+|+++.++|+||.|.. ..+|++|+|++++. +..++.+.|++||.|.|+|++++. .+++.||+|.
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~-~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~LS~k~ 140 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQG 140 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEEEEEec
Confidence 57999999999999999999999975 79999999999863 456788999999999999999994 5699999987
Q ss_pred ccc
Q 000173 1541 SYF 1543 (1935)
Q Consensus 1541 ~~~ 1543 (1935)
..+
T Consensus 141 ~~l 143 (235)
T 2z0s_A 141 EGL 143 (235)
T ss_dssp SSC
T ss_pred ccC
Confidence 655
|
| >3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-08 Score=130.50 Aligned_cols=83 Identities=19% Similarity=0.371 Sum_probs=0.0
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++++|+++.|+|+++.++|+||+|.++++|+||+++++|.|+.++.+.|++||.|+++|+++|+ ++||.||+|.....
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~ 701 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQ 701 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEeccCC
Confidence 46889999999999999999999999999999999999999999999999999999999999997 99999999988766
Q ss_pred cccc
Q 000173 1454 TASQ 1457 (1935)
Q Consensus 1454 ~~~~ 1457 (1935)
++.+
T Consensus 702 ~g~~ 705 (723)
T 3cdi_A 702 SQPA 705 (723)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-06 Score=108.94 Aligned_cols=138 Identities=14% Similarity=-0.020 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
...|..+.+.+...++ .+.|...|++|+++.+... +...++.+.+..+....+|++++..+
T Consensus 223 a~~~~~~g~~~~~~g~--~~~Ai~~y~kAl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQN--WEMAIKKYTKVLRYVEGSR-----------------AAAEDADGAKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHH-----------------HHSCHHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHhhcCc-----------------cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888884 4888888888886543211 01112223334455678899999999
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1883 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar 1883 (1935)
++. ++++|...|++|++..|.+ ..+|..+|.+++..|++++|...|+++++.+|.+..+|..++.++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSN--TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 988 9999999999999988876 6899999999999999999999999999999999999999988888877766654
|
| >4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E | Back alignment and structure |
|---|
Probab=98.41 E-value=5.9e-07 Score=98.81 Aligned_cols=78 Identities=27% Similarity=0.369 Sum_probs=66.9
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-----------CCccccCCCCcEEEEEEEEEeCC----
Q 000173 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-----------ESPEKEFPIGKLVAGRVLSVEPL---- 1439 (1935)
Q Consensus 1375 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~-----------~~~~~~f~~G~~V~~kVl~vd~~---- 1439 (1935)
...+|+++.|.|++++++|+||+++ .++|++|+++++++|. ++....|++||.|+++|+++|.+
T Consensus 78 ~p~~Gev~~G~V~~v~~~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~ 156 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNYGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGR 156 (180)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC-----
T ss_pred eccCCCEEEEEEeeeccceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCcc
Confidence 3568999999999999999999998 5899999999999876 46778899999999999999864
Q ss_pred CCEEEEEEecCccc
Q 000173 1440 SKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1440 ~~ri~lSlk~~~~~ 1453 (1935)
..||.||+|+.-..
T Consensus 157 ~~rI~ls~k~~gLG 170 (180)
T 4ayb_E 157 LPRIALTMRQPYLG 170 (180)
T ss_dssp --CEEEECCSTTCE
T ss_pred cCcEEEEcCCCCCC
Confidence 45899999986543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-06 Score=86.97 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWS 1867 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~~dlw~ 1867 (1935)
|....+|+.++..+... ++++|...|+++++..|.. ..+|..+|.+++..|++++|...|+++++..|. +..+|.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE--SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 34445556666666655 6666666666666666554 356666666666666666666666666666666 666666
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHh
Q 000173 1868 IYLDQEIRL-GDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1868 ~ya~~e~k~-g~~e~ar~lferal~ 1891 (1935)
.++..+... |++++|...|++++.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 666666666 666666666666665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.3e-06 Score=109.15 Aligned_cols=163 Identities=11% Similarity=0.025 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---C
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQ----------NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---Q 1808 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~----------~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~---~ 1808 (1935)
.++|.+.+++|++.+|.. ++|.....++...++ +++|.+.|.++++.+|.+..+|...+-.+.+. +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 478999999999999985 999999999998888 99999999999999999999999999877776 5
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----------- 1876 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g-~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~----------- 1876 (1935)
+++|.+.+.+|++..|.+ ..+|...+.+....| .++++.+.++++++.+|.+..+|.....+..+.
T Consensus 125 ~~~el~~~~k~l~~d~~N--~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhcccc--ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 699999999999999988 479999999999999 899999999999999999999999988887774
Q ss_pred ---CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1877 ---GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1877 ---g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
+.++++..++.+|+. ..|... ..|.-+.-+.
T Consensus 203 ~~~~~~~eel~~~~~ai~--~~P~~~-saW~y~~~ll 236 (567)
T 1dce_A 203 LPENVLLKELELVQNAFF--TDPNDQ-SAWFYHRWLL 236 (567)
T ss_dssp SCHHHHHHHHHHHHHHHH--HCSSCS-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--hCCCCc-cHHHHHHHHH
Confidence 456889999999998 666655 4555443333
|
| >2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C | Back alignment and structure |
|---|
Probab=98.36 E-value=4.3e-07 Score=104.24 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=70.2
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc---cCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV---DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~---~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..++||+|.|+|+++.++|+||.|.. ...|++|+|++++.+. .++.+.|++||.|.|+|++++. .+++.||+|..
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~-~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~LS~r~~ 148 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKGK 148 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCST
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCC-CeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEEEEccc
Confidence 46899999999999999999999975 7999999999998777 7788999999999999999995 57999999886
Q ss_pred ccC
Q 000173 1542 YFK 1544 (1935)
Q Consensus 1542 ~~~ 1544 (1935)
.++
T Consensus 149 ~lG 151 (251)
T 2je6_I 149 DLG 151 (251)
T ss_dssp TCE
T ss_pred cCC
Confidence 553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.3e-07 Score=109.51 Aligned_cols=101 Identities=13% Similarity=0.138 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
.+|+.++.+|.+.+++++|...|++++...|.+..+|++++..++.. ++++|+..|+++++..|.+ ..++..++.+.
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~--~~a~~~L~~l~ 308 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD--KAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999 9999999999999999887 47888888884
Q ss_pred -HHcCCHHHHHHHHHHHHHhCCCCH
Q 000173 1840 -FKNGVADRGRSMFEGILSEYPKRT 1863 (1935)
Q Consensus 1840 -~~~g~~e~Ar~ife~al~~~Pk~~ 1863 (1935)
...+..++++.+|.+++...|.+.
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 456788999999999999988754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-06 Score=85.25 Aligned_cols=102 Identities=12% Similarity=-0.051 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.++...+++++|...|+++++..+....+|+.++..+... ++++|...|+++++..|...+..+|..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999 99999999999999998822368999999999
Q ss_pred HHc-CCHHHHHHHHHHHHHhCCCC
Q 000173 1840 FKN-GVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1840 ~~~-g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
+.. |++++|...|++++...|..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 999 99999999999999999874
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5e-06 Score=108.53 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=142.1
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD----------VEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1737 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e----------~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~ 1737 (1935)
.++|...|++++..+|++..+|..-.......++ +++|.+.+++|++..|-. ..+|.....+...
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-----y~aW~hR~w~l~~ 119 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTWHHRCWLLSR 119 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Confidence 6778899999999999999999998888877776 899999999999765532 4689888888788
Q ss_pred cCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------
Q 000173 1738 YGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTE-QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-------- 1807 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~-~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-------- 1807 (1935)
++.+..+++.+.+++|++..+. ...|....-++...+ .++++.+.+.++++..+.+..+|...+..+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 8832338888999999998876 488888888888888 888999999999988889999998888877662
Q ss_pred -------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000173 1808 -------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1847 (1935)
Q Consensus 1808 -------~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~ 1847 (1935)
.+++|.+++.+|+...|.+. .+|..+..++.+.+.+++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~--saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCS--HHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCc--cHHHHHHHHHhcCCCccc
Confidence 46888888889998888885 788888887777776554
|
| >2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=6.7e-07 Score=99.96 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=64.8
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCcc----------ccCCCCcEEEEEEEEEeCCCC---E
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE----------KEFPIGKLVAGRVLSVEPLSK---R 1442 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~----------~~f~~G~~V~~kVl~vd~~~~---r 1442 (1935)
.++|+++.|.|++|+++|+||+|++ .+|+||+++|++.|.-++. +.|++||.|+++|+++|.+.+ +
T Consensus 81 p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~ 159 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 159 (215)
T ss_dssp CCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEE
T ss_pred cCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccEE
Confidence 4689999999999999999999998 9999999999987765543 569999999999999998765 6
Q ss_pred EEEEEecCcccc
Q 000173 1443 VEVTLKTSDSRT 1454 (1935)
Q Consensus 1443 i~lSlk~~~~~~ 1454 (1935)
+. |+++.-..+
T Consensus 160 Ig-Smk~~~LG~ 170 (215)
T 2b8k_G 160 IG-SIKEDYLGA 170 (215)
T ss_dssp EE-ECCSTTCEE
T ss_pred EE-EcCCCCCCC
Confidence 66 776654433
|
| >3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.35 E-value=2e-07 Score=101.43 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=64.0
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCc----------ccccCCCCEEEEEEEEEecCC--
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI----------ETIYRAGEKVKVKILKVDKEK-- 1531 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~----------~~~~~~Gd~V~~~Il~id~~~-- 1531 (1935)
....+|+++.|+|+++++||+||+|+ .++||+|+|++++.+.-|. ...|++||.|+++|+++|.+.
T Consensus 80 f~p~~Gev~~G~V~~v~~fG~FV~l~--~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~ 157 (172)
T 3h0g_G 80 WRPFRGEVVDAIVTTVNKMGFFANIG--PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATE 157 (172)
T ss_dssp ECCCTTCEEECCCCEEETTEEECCBT--TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSC
T ss_pred eccCCCCEEEEEEEEEEcceEEEEeC--CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCC
Confidence 35678999999999999999999996 4789999999987644332 468999999999999999887
Q ss_pred -CeeEEecccccc
Q 000173 1532 -RRISLGMKSSYF 1543 (1935)
Q Consensus 1532 -~ri~lslK~~~~ 1543 (1935)
.+|. |||..|.
T Consensus 158 ~~~Ig-tm~~~~L 169 (172)
T 3h0g_G 158 IFAIA-TMKEDYL 169 (172)
T ss_dssp EEEEE-ECCSTTC
T ss_pred ceEEE-EcCCCCC
Confidence 4666 7776554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.2e-06 Score=91.47 Aligned_cols=150 Identities=10% Similarity=-0.036 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHc-CHHHHH
Q 000173 1742 PEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQ 1813 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------~~~~vw~~~~~~l~~~-~~e~A~ 1813 (1935)
..+.|++.++........ ..+|..++.+|...+++++|.+.|++++..+. ....+|..++..+... ++++|.
T Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 7 DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86 (203)
T ss_dssp CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 347777755554442222 38888889999999999999999999888542 3456788888888888 999999
Q ss_pred HHHHHHHHh---CCCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHH
Q 000173 1814 AVVQRALLS---LPRH--KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--R----TDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1814 ~ll~ralk~---~p~~--~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~----~dlw~~ya~~e~k~g~~e~a 1882 (1935)
..|++++.. .+.. ....++..+|.+++..|++++|...|++++...+. + ..++..++..+...|++++|
T Consensus 87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 999998887 4322 22467888888888899999999999998865432 1 22457778888888999999
Q ss_pred HHHHHHHHh
Q 000173 1883 RGLFERAIS 1891 (1935)
Q Consensus 1883 r~lferal~ 1891 (1935)
+..|++++.
T Consensus 167 ~~~~~~al~ 175 (203)
T 3gw4_A 167 QQHWLRARD 175 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888887
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.34 E-value=6.4e-07 Score=110.58 Aligned_cols=219 Identities=9% Similarity=0.003 Sum_probs=117.4
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..+++..|+.+....|+ +.+...++..+.+.|+++++.+++.. |. ...|...+......|.+ ++|+
T Consensus 77 ~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn------~~a~~~IGd~~~~~g~y--eeA~ 142 (449)
T 1b89_A 77 WEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN------NAHIQQVGDRCYDEKMY--DAAK 142 (449)
T ss_dssp ---------------------------------CHHHHTTTTTC-----C----------------------CT--TTHH
T ss_pred HHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc------HHHHHHHHHHHHHcCCH--HHHH
Confidence 33444544544443333 55566666666677777776666532 11 12677777777777755 7777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1748 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1748 ~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
..|.++ .-|..++.++.+.|++++|.+.|.++ .++.+|...+..+... +++.|...... +..
T Consensus 143 ~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---- 205 (449)
T 1b89_A 143 LLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---- 205 (449)
T ss_dssp HHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT----
T ss_pred HHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh----
Confidence 777776 46778888888888888888888877 3778888887777777 88887554443 112
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCc-----hhH
Q 000173 1827 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRGLFERAISLSLPP-----KKM 1899 (1935)
Q Consensus 1827 ~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~--g~~e~ar~lferal~~~~~p-----k~~ 1899 (1935)
|+.-....+.++.+.|.+++|..+|+.+|...+....+|..++.++.+. +...+...+|...++ .++ .++
T Consensus 206 -~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~~~~~ 282 (449)
T 1b89_A 206 -HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQA 282 (449)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHHHHTT
T ss_pred -CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 2333445667777888888888888888888888888888887777765 344445555555444 444 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIEY 1921 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~~ 1921 (1935)
.+|..+.-+...+++++.|..
T Consensus 283 -~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 283 -HLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp -TCHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHHHhhchHHHHHH
Confidence 578888877777777776543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.9e-06 Score=91.63 Aligned_cols=161 Identities=11% Similarity=0.053 Sum_probs=111.6
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHcCCHH
Q 000173 1772 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH----KHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~----~~~~~~~~~a~le~~~g~~e 1846 (1935)
..|++++|.+.++.+.........+|..++..+... ++++|...|++++...... ....++...|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 467888888855444433335677888888888888 8888888888888754322 12467888888888888888
Q ss_pred HHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-CchhHHHHHHHHHHHHHHcCCH
Q 000173 1847 RGRSMFEGILSE---YPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAISLS--L-PPKKMKFLFKKYLEYEKSVGEE 1916 (1935)
Q Consensus 1847 ~Ar~ife~al~~---~Pk~----~dlw~~ya~~e~k~g~~e~ar~lferal~~~--~-~pk~~k~l~~~yl~~E~~~G~~ 1916 (1935)
+|...|++++.. .|.+ ..++..++..+...|++++|+..|++++... . .+...-..+..........|+.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888888888877 4432 3457778888888888888888888888521 1 1111112345556667778888
Q ss_pred HHHHHHHHHHHHHHHh
Q 000173 1917 ERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1917 e~a~~v~~rAle~v~~ 1932 (1935)
+.|...+++|++..+.
T Consensus 164 ~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888887664
|
| >3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A | Back alignment and structure |
|---|
Probab=98.34 E-value=5.5e-07 Score=98.39 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=66.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC----------CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSR----------KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~----------~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~l 1445 (1935)
.+ |++|.|+|++|.++|+||+|.. +.+|++|++++++.++.++.+.|++||.|.++|++ +++.|
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~L 129 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLRL 129 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTEE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEEE
Confidence 46 9999999999999999999987 89999999999999999999999999999999997 78999
Q ss_pred EEecCcc
Q 000173 1446 TLKTSDS 1452 (1935)
Q Consensus 1446 Slk~~~~ 1452 (1935)
|+|....
T Consensus 130 S~k~~~l 136 (179)
T 3m7n_A 130 STKEEEM 136 (179)
T ss_dssp ECCSTTC
T ss_pred EEecCCC
Confidence 9987543
|
| >1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ... | Back alignment and structure |
|---|
Probab=98.34 E-value=8.1e-07 Score=96.68 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=56.6
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCcc----------ccCCCCcEEEEEEEEEeCCCC
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE----------KEFPIGKLVAGRVLSVEPLSK 1441 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~----------~~f~~G~~V~~kVl~vd~~~~ 1441 (1935)
..+|+++.|.|++++++|+||+|++ .+|+||+++|++.|.-++. +.|++||.|+++|+++|.+.+
T Consensus 81 ~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT
T ss_pred CCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC
Confidence 4589999999999999999999998 9999999999887653332 669999999999999997664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.6e-06 Score=83.25 Aligned_cols=102 Identities=10% Similarity=0.011 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 000173 1796 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYL 1870 (1935)
Q Consensus 1796 vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~---~dlw~~ya 1870 (1935)
.|+..+..++.. ++++|...|+++++..|.+.. ..+|..+|..++..|++++|...|++++..+|++ .++|..++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467888888888 999999999999999987631 2699999999999999999999999999999999 88899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1871 DQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1871 ~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
..+...|+++.|+..|++++. ..|...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~--~~p~~~ 110 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT--QYPGSD 110 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--HCCCCh
Confidence 999999999999999999998 555544
|
| >2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.5e-07 Score=102.85 Aligned_cols=75 Identities=12% Similarity=0.229 Sum_probs=67.9
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCC----cccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000173 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD----GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1935)
Q Consensus 1375 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd----~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~ 1450 (1935)
..++||+|.|+|+++.++|+||+|+...+|++|++++++ .+..++.+.|++||.|.|+|++++. ++++.||+|..
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~LS~k~~ 141 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQGE 141 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECCSS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEEEEEecc
Confidence 368999999999999999999999999999999999987 3678899999999999999999995 56899998753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.3e-06 Score=85.69 Aligned_cols=98 Identities=16% Similarity=0.082 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-------TD 1864 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~-------~d 1864 (1935)
....|..+|..++++ ++++|.+.|++|+...|.. +.+|...|.+++..|++++|...|++++...|+. ..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~--~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN--ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 455788899999999 9999999999999999987 6899999999999999999999999999987764 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1865 LWSIYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1865 lw~~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
+|...+..+...|+++.|...|++++..
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6777888888999999999999999983
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.3e-06 Score=88.59 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC--------CC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL--------PR--------HKHIKFISQTAILEFKNGVADRGRSMFEGI 1855 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~--------p~--------~~~~~~~~~~a~le~~~g~~e~Ar~ife~a 1855 (1935)
....|...+..++.. ++++|...|.+|+..+ |. .....+|...|..++..|++++|...|+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 356788889999999 9999999999999982 21 123589999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1856 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1856 l~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
+..+|.+...|+.++..+...|+++.|...|++++. +.|.....++..+....
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 77776634444444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.8e-06 Score=88.61 Aligned_cols=131 Identities=9% Similarity=-0.124 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----H
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----I 1829 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~----~ 1829 (1935)
.+|..++.+|...+++++|.+.|++++..++.. ..+|..++..+... ++++|...|++++...+.... .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 345555555556666666666666555543211 12455555555555 555555555555554332211 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPK------RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk------~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.++..+|.+++..|++++|...|++++...+. ...++..++..+...|++++|...|++++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45556666666666666666666666654321 123455556666666666666666666654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.29 E-value=4.4e-06 Score=84.92 Aligned_cols=111 Identities=10% Similarity=0.070 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-------TD 1864 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~-------~d 1864 (1935)
....|+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+ ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN--MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 356889999999999 9999999999999999876 6899999999999999999999999999998876 88
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000173 1865 LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1865 lw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~ 1909 (1935)
+|..++..+...|+++.|...|++++. ..|. . ..+..+...
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~-~-~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA--EHRT-P-DVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCC-H-HHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC-H-HHHHHHHHH
Confidence 999999999999999999999999999 4443 2 344444433
|
| >2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-06 Score=99.06 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=69.1
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcc-cccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~-~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
..++||+|.|+|+.+.++|+||.|+. ...|++|+|++++. ...+..+.|++||.|.|+|++++. .+++.||+|...+
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~-~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~~~l 131 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDRIC 131 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCSSSC
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEccccC
Confidence 46999999999999999999999964 68999999999964 667899999999999999999995 5899999988655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-06 Score=88.41 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000173 1774 EQNKLADELLYKMIKK---FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1849 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~---~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar 1849 (1935)
|++++|...|+++++. .|....+|+.++..+... ++++|...|+++++..|.+ ..+|..+|..++..|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCCHHHHH
Confidence 4455555555555554 344555555555555555 5555555556655555554 355555566666666666666
Q ss_pred HHHHHHHHhCCCCHHHH
Q 000173 1850 SMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1850 ~ife~al~~~Pk~~dlw 1866 (1935)
..|++++...|.+.+++
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 66666666555555543
|
| >2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-06 Score=94.55 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=59.7
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCc------------ccCccCCCEEEEEEEEeeCCCC---
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL------------SKTYYVGQSVRSNILDVNSETG--- 824 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~------------~~~f~~Gq~V~~~V~~vd~e~~--- 824 (1935)
.+|+++.|.|++++++|+||++ +.+.||+|.|++++.+.-++ ...|++||.|+++|+++|.+.+
T Consensus 80 ~~Gev~~G~V~~v~~fG~fV~l-~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~ 158 (172)
T 2c35_B 80 FKGEVVDAVVTQVNKVGLFTEI-GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIF 158 (172)
T ss_dssp CTTCEEEEEEEEEETTEEEEEE-TTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEE
T ss_pred CCCCEEEEEEEEEeCCEEEEEE-CCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCcE
Confidence 4899999999999999999999 57889999999986544322 4469999999999999998766
Q ss_pred eEEEeeccc
Q 000173 825 RITLSLKQS 833 (1935)
Q Consensus 825 rl~LSlk~~ 833 (1935)
++. ||++.
T Consensus 159 ~ig-sm~~~ 166 (172)
T 2c35_B 159 AIG-SLMDD 166 (172)
T ss_dssp EEE-ECCST
T ss_pred EEE-EecCC
Confidence 444 77654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.22 E-value=7.1e-06 Score=87.34 Aligned_cols=101 Identities=10% Similarity=-0.039 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHc-CHHHHHHHHHHHHHh------
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKH-------SCK-----VWLRRVQRLLKQ-QQEGVQAVVQRALLS------ 1822 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~-------~~~-----vw~~~~~~l~~~-~~e~A~~ll~ralk~------ 1822 (1935)
.|...++.+...|++++|.+.|.+++...|. ... +|.+.+..+... ++++|...|.+||..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4445555555555555555555555555544 222 555555555555 555555555555555
Q ss_pred -CCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1823 -LPRHKHIKFI----SQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1823 -~p~~~~~~~~----~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
.|.. ..+| ...|..+...|++++|...|++++...|.+..
T Consensus 93 ~~pd~--~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 93 LNQDE--GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp TTSTH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCch--HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 5433 3455 55555555555555555555555555554433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.21 E-value=5e-05 Score=97.51 Aligned_cols=178 Identities=11% Similarity=0.050 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHhc-CCCH
Q 000173 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQY--CDPKKVHLALLGLYERTEQ---------NKLADELLYKMIKKF-KHSC 1794 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~~~e~a~~vferAl~~--~~~~~v~~~l~~i~~~~~~---------~~~A~el~~~~~k~~-~~~~ 1794 (1935)
++...++..-+.| ..++|.++|+++.+. .|+...|..++..+.+.+. .++|.++|++|...- ..+.
T Consensus 28 ~l~~~id~c~k~G--~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 28 LLKQKLDMCSKKG--DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHTTTSC--CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 3444555555556 446666666666654 2344566666666554433 456666666665542 3455
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~-Pk~~dlw~~ya~~ 1872 (1935)
..|..++..+.+. ++++|.++|+++.+.--. .....|..+...+.+.|+.++|..+|+.....- .-+...|..++..
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 6666666666666 666666666666554211 123556666666666666666666666665542 2234556666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000173 1873 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1873 e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~ 1909 (1935)
+.+.|+.++|..+|++.-+....|... .|...+.+
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps~~--T~~~l~~~ 219 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVSKS--TFDMIEEW 219 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBCHH--HHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcCHH--HHHHHHHH
Confidence 666666666666666666544555433 34444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.9e-05 Score=99.24 Aligned_cols=199 Identities=9% Similarity=-0.015 Sum_probs=116.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchh------------hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 000173 1691 KYMAFMLSMADVEKARSIAERALQTINIREEN------------EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1758 (1935)
Q Consensus 1691 ~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~------------Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~ 1758 (1935)
.-+.-..+.|++++|.+.|.++++..+...+. +.-..+..++.++...|+ .++|.+.|+++++..+
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--KDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
Confidence 33455567789999999999999754432210 011234455566666663 3667777776665533
Q ss_pred C--H-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1759 P--K-----KVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1759 ~--~-----~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
. . .++..+..++...++++.|.++++.++...+ ....++..++..+... ++++|..++++++....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 2 1 3344444455556666777777666665432 2245666666666666 67777766666665432
Q ss_pred C----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1825 R----HKHIKFISQTAILEFKNGVADRGRSMFEGILSEY---PKR----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1825 ~----~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~---Pk~----~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
. ...+.++...++++...|++++|+.+|++++... +.. ..+|..++.++...++++.|...|..++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 1224566666666666677777777776666543 221 12345555555566666666666666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.20 E-value=6.2e-06 Score=101.91 Aligned_cols=138 Identities=10% Similarity=0.048 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1760 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
...|..++..|.+.+++++|.+.|+++++..+... .. .. +.+.+..|. ...+|..+|.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~~~~-------~~~~~~~~~--~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AAAED-------ADGAKLQPV--ALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HHSCH-------HHHGGGHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cccCh-------HHHHHHHHH--HHHHHHHHHHH
Confidence 47788999999999999999999999987542111 01 21 222222222 25899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHH
Q 000173 1839 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1918 (1935)
Q Consensus 1839 e~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~ 1918 (1935)
+++.|++++|...|+++++.+|.+..+|+.++..+...|++++|...|++|+. +.|... .+|..+.......++.+.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~-~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDK-AIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 666666 577777777766666555
Q ss_pred HH
Q 000173 1919 IE 1920 (1935)
Q Consensus 1919 a~ 1920 (1935)
++
T Consensus 360 a~ 361 (370)
T 1ihg_A 360 KE 361 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-05 Score=84.71 Aligned_cols=135 Identities=12% Similarity=-0.087 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC----
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---- 1793 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---- 1793 (1935)
..+|..+..++...| ..+.|...|++|++..+.. .+|..++.+|...+++++|.+.|++++..++..
T Consensus 9 ~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 457788888888899 4599999999999876432 589999999999999999999999999876432
Q ss_pred --HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1794 --CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1794 --~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
..+|..++..+... ++++|...|++++...+... ...++..+|.+++..|++++|...|+++++....
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 66788999999999 99999999999998754321 2467888999999999999999999999987654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.18 E-value=5.4e-05 Score=89.73 Aligned_cols=181 Identities=9% Similarity=0.056 Sum_probs=139.0
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCChHHHHH
Q 000173 1705 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD---PKKVHLALLGLYERTEQNKLADE 1781 (1935)
Q Consensus 1705 Ar~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~---~~~v~~~l~~i~~~~~~~~~A~e 1781 (1935)
|...+++.+..-+. . -..+..++..+...| +.++|.+++.+++...+ ....+..++.+|.+.++.+.|..
T Consensus 85 a~~~l~~l~~~~~~-~----~~~~~~la~i~~~~g--~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDKQN-S----PYELYLLATAQAILG--DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTSCC-C----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCC-C----cHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 77778777754221 1 123456666677789 55999999999999886 34999999999999999999999
Q ss_pred HHHHHHHhcCC----CHHHHHHHHHH--HH--Hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1782 LLYKMIKKFKH----SCKVWLRRVQR--LL--KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1852 (1935)
Q Consensus 1782 l~~~~~k~~~~----~~~vw~~~~~~--l~--~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~if 1852 (1935)
.++++.+..++ .-.+++.++.. .+ .. +++.|..+|+++...+|......++. . .+.+.|++++|..++
T Consensus 158 ~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLl--n-~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 158 IFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL--N-LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH--H-HHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHH--H-HHHHcCCHHHHHHHH
Confidence 99999887662 24455555544 22 23 89999999999998887632122333 3 788999999999999
Q ss_pred HHHHHhC----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1853 EGILSEY----------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1853 e~al~~~----------Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
+.+++.+ |++.+.....+.+....|+ .|..+++++.. ..|..+
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 9888764 8899999888888888887 88999999998 777776
|
| >2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C | Back alignment and structure |
|---|
Probab=98.17 E-value=2.2e-06 Score=98.28 Aligned_cols=73 Identities=23% Similarity=0.262 Sum_probs=68.0
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc---CCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV---ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~---~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
.++||+|.|+|+++.++|+||+|+...+|++|++++++.+. .++.+.|++||.|.|+|++++. ++++.||+|.
T Consensus 72 p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~LS~r~ 147 (251)
T 2je6_I 72 PKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKG 147 (251)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCS
T ss_pred CCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEEEEcc
Confidence 57999999999999999999999989999999999998887 8889999999999999999995 5799999875
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=7.1e-06 Score=87.16 Aligned_cols=94 Identities=16% Similarity=0.028 Sum_probs=68.8
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C----------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000173 1772 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q----------QEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1840 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~----------~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~ 1840 (1935)
+.+++++|.+.|++++...|.....|++++..+... + +++|...|++||+..|.. ..+|..+|..+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~--~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--DEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHH
Confidence 445567777788888877788888888888777766 4 457778888888887776 477777777777
Q ss_pred HcC-----------CHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1841 KNG-----------VADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1841 ~~g-----------~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
..| ++++|...|++++..+|++...|.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 664 777888888888888887654433
|
| >1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-06 Score=104.17 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=81.5
Q ss_pred CCCCCCEEEEEEEEEe-CCeEEEEEecccccchhhH-----HhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecC
Q 000173 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v~-~~~i~ltlK~~l~~~~~~~-----~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~ 615 (1935)
.|.+|+.+.+.|...+ .+....|.|+.+....... +.+|. .+.|+++.|+|.++.++|+||++ |++.|++|.
T Consensus 86 ~~~vGd~ie~~I~~~dfgR~aa~~aKqvi~qkireaere~i~~e~~-~~~GeIV~G~V~ri~~~~v~VDl-Gk~EgiLp~ 163 (344)
T 1hh2_P 86 LAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKEKQFEKYS-ELKGTVTTAEVIRVMGEWADIRI-GKLETRLPK 163 (344)
T ss_dssp TCCTTCEEEEECCCCCSSSCSGGGHHHHHHHHHHHHTTCCSSCCTT-CCTTCEEEEEEEEECSSEEEEEE-TTEEEEEEG
T ss_pred cccCCCEEEEEEccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCEEEEEEEEEecCcEEEEe-CCeEEEEeH
Confidence 5899999999987664 3445555566554432221 33342 24799999999999999999999 599999999
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCC--EEEEEEe
Q 000173 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFM 655 (1935)
Q Consensus 616 se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~--ri~lS~k 655 (1935)
+++. |.+.|++|+.|+|.|++++.+++ ++.||..
T Consensus 164 sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt 199 (344)
T 1hh2_P 164 KEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR 199 (344)
T ss_dssp GGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS
T ss_pred HHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee
Confidence 9996 55789999999999999998766 5666654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-05 Score=85.00 Aligned_cols=104 Identities=15% Similarity=0.036 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC------Ch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH------KH----IKFISQTAILEFKNGVADRGRSMFEGILSE--- 1858 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~------~~----~~~~~~~a~le~~~g~~e~Ar~ife~al~~--- 1858 (1935)
....|...+..++.. ++++|...|.+||...|.+ .+ ..+|...|..+...|++++|...|+++|..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 345788888889988 9999999999999999983 22 239999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000173 1859 ----YPKRTDLW----SIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1859 ----~Pk~~dlw----~~ya~~e~k~g~~e~ar~lferal~~~~~pk~ 1898 (1935)
.|++...| +..+..+...|++++|...|++++. +.|.+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle--l~p~d 135 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE--MIEER 135 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh--cCCCc
Confidence 99999999 9999999999999999999999998 54443
|
| >2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=5.5e-06 Score=93.91 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=67.9
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc-ccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~-~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
.++||+|.|+|+++.++|+||+|+...+|++|++++++. +..+..+.|++||.|.|+|++++. ++++.||+|.
T Consensus 55 p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~ 128 (229)
T 2ba0_A 55 PSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKD 128 (229)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCS
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEcc
Confidence 589999999999999999999999889999999999974 788899999999999999999995 5799999875
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=5e-05 Score=95.29 Aligned_cols=192 Identities=13% Similarity=0.119 Sum_probs=145.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhh-HHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSS-----------------FVWIKYMAFMLSMADVEKARSIAERALQTINIREENE-KLNI 1727 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~-----------------~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~E-kl~l 1727 (1935)
++..+|...|.+++...|+.. .++..++..+...|++++|.+.+.+++...+.-.... ...+
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 445667778888887766543 3477889999999999999999999997544221111 0123
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCH
Q 000173 1728 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFK------HSC 1794 (1935)
Q Consensus 1728 W~ayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------~~~ 1794 (1935)
...+..+....+ ..+.|..++++++..... ..++..++.+|...|++.+|..++++++.... ...
T Consensus 98 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 98 KTLIEKFEQVPD--SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHCSCCS--CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 333333444456 469999999999875421 38999999999999999999999999987653 236
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-----HIKFISQTAILEFKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~ 1859 (1935)
.+|+..+..+... ++++|+.+|++++...+... ...++...+.++...++++.|...|..++..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 7899999999999 99999999999988643321 13577788888889999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00018 Score=92.35 Aligned_cols=181 Identities=7% Similarity=-0.002 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHhc--C
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-------PEEAVVKVFQRALQY--C 1757 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~-------~~e~a~~vferAl~~--~ 1757 (1935)
..+...+..+.+.|++++|.++|+++.+. ....+ ...|..++......+.. ..+.|.++|+++... .
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~ 102 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV 102 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 35677778888999999999999999864 21111 34677777776544421 147789999988765 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 000173 1758 DPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT 1835 (1935)
Q Consensus 1758 ~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~-~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~ 1835 (1935)
|+...|..++..|.+.|+.++|.++|++|.+. ...+...|..++..+.+. +.++|.++|+++...--. .....|..+
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~-Pd~~ty~~L 181 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV-PEEPELAAL 181 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCHHHHHHH
Confidence 56789999999999999999999999999875 456888899999999999 999999999999876422 235788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 000173 1836 AILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~al~~--~Pk~~dlw~~ya~~e 1873 (1935)
...+.+.|+.++|..+|++.-.. .|. ...|.......
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 99999999999999999998654 344 34555555543
|
| >1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A | Back alignment and structure |
|---|
Probab=98.08 E-value=8.7e-06 Score=96.54 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=88.1
Q ss_pred ccccCCCeEe-eEEEeecCCCeEEEeccchhcchhcc--CCccccccC--CCCEEEEEEEEEecCeEEEEECCCeEEEee
Q 000173 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH--PNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790 (1935)
Q Consensus 716 ~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~--~~~~~~~~~--~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~ 790 (1935)
..+.+|+.++ .+...| -++....+.|+.+...... -..-|++++ .|++++|+|.+++++|+||.+ |++.|++|
T Consensus 85 ~~~~vGd~ie~~I~~~d-fgR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDl-Gk~EgiLp 162 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKN-FGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRI-GKLETRLP 162 (344)
T ss_dssp TTCCTTCEEEEECCCCC-SSSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred ccccCCCEEEEEEcccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEe-CCeEEEEe
Confidence 4578999999 443333 2344667778887654332 112234444 899999999999999999999 59999999
Q ss_pred CCccCcccccCcccCccCCCEEEEEEEEeeCCCC--eEEEeecccccCCCCchhhHHHHHHH
Q 000173 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFLLE 850 (1935)
Q Consensus 791 ~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~--rl~LSlk~~~~~~~d~~~i~~~l~~~ 850 (1935)
+++++ |.+.|++||.|+|.|++++.+++ ++.||.. .+.++..+|..+
T Consensus 163 ~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt-------~p~~lk~LfelE 211 (344)
T 1hh2_P 163 KKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR-------VPEFVIGLMKLE 211 (344)
T ss_dssp GGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS-------SHHHHHHHHHHH
T ss_pred HHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee-------ccHHHHHHHHhh
Confidence 99996 56789999999999999998765 5666654 345566666643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-06 Score=112.00 Aligned_cols=130 Identities=15% Similarity=-0.025 Sum_probs=109.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000173 1728 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1806 (1935)
Q Consensus 1728 W~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~ 1806 (1935)
|..+...+...| ..++|.+.|++|++..|.. ..|..++.+|.+.+++++|.+.|+++++..|....+|+.++..+..
T Consensus 9 ~~~lg~~~~~~g--~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAK--DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 444444455677 4599999999999999874 9999999999999999999999999999999999999999999999
Q ss_pred c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCC
Q 000173 1807 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL--EFKNGVADRGRSMFE-----------GILSEYPK 1861 (1935)
Q Consensus 1807 ~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l--e~~~g~~e~Ar~ife-----------~al~~~Pk 1861 (1935)
. ++++|.+.|++|++..|... .+|..++.+ +.+.|++++|..+|+ +++...|.
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDK--DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCT--THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 9 99999999999999999885 567777766 888899999999999 77776655
|
| >3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-06 Score=92.83 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=60.6
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCc----------cccCCCCcEEEEEEEEEeCCCC---E
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP----------EKEFPIGKLVAGRVLSVEPLSK---R 1442 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~----------~~~f~~G~~V~~kVl~vd~~~~---r 1442 (1935)
..+|+++.|.|++++++|+||+|++ ++|+||+++|++.|.-++ ...|++||.|+++|+++|.+.+ +
T Consensus 82 p~~Gev~~G~V~~v~~fG~FV~l~~-~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~~~ 160 (172)
T 3h0g_G 82 PFRGEVVDAIVTTVNKMGFFANIGP-LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIFA 160 (172)
T ss_dssp CCTTCEEECCCCEEETTEEECCBTT-BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEEE
T ss_pred cCCCCEEEEEEEEEEcceEEEEeCC-eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCceE
Confidence 4589999999999999999999984 789999999988766555 4689999999999999998764 4
Q ss_pred EEEEEec
Q 000173 1443 VEVTLKT 1449 (1935)
Q Consensus 1443 i~lSlk~ 1449 (1935)
|. |+|+
T Consensus 161 Ig-tm~~ 166 (172)
T 3h0g_G 161 IA-TMKE 166 (172)
T ss_dssp EE-ECCS
T ss_pred EE-EcCC
Confidence 44 5543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=2e-05 Score=83.67 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV----------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~----------~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
.+++|++.|+++++..|.+ ..+|..++..+...++ +++|...|+++|+.+|+..++|+.++..+..+|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~--aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLD--ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 6899999999999999988 6999999999998876 469999999999999999999999999999875
Q ss_pred -----------CHHHHHHHHHHHHhcCCCchhH
Q 000173 1878 -----------DVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1878 -----------~~e~ar~lferal~~~~~pk~~ 1899 (1935)
++++|...|++|+. +.|...
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCCH
Confidence 89999999999999 777664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-05 Score=80.37 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcC---CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYC---DPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1744 e~a~~vferAl~~~---~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
++|...|++|++.. |.. .+|..++.+|...+++++|.+.|+++++.+|.+..+|+.++..+... ++++|...|++
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77999999999985 433 99999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhCCCCC
Q 000173 1819 ALLSLPRHK 1827 (1935)
Q Consensus 1819 alk~~p~~~ 1827 (1935)
++...|.+.
T Consensus 87 al~~~p~~~ 95 (117)
T 3k9i_A 87 IIAETSDDE 95 (117)
T ss_dssp HHHHHCCCH
T ss_pred HHHhCCCcH
Confidence 999998874
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.9e-05 Score=75.73 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1812 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
|...|+++++..|.. ..+|..+|.+++..|++++|...|++++..+|.+...|..++..+...|+++.|+..|++++.
T Consensus 4 a~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDN--MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555544 355555555555556666666666666665565555565555555556666666666665555
|
| >2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.8e-05 Score=77.71 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=64.2
Q ss_pred CCCCeEEEEEEEE---ecCcEEEEEEecCceeEEEeccccCCcccccccccccccCCCeEeeEEEeecCCCeEEEeccch
Q 000173 668 KLGSLVSGVVDVV---TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744 (1935)
Q Consensus 668 ~~G~iv~g~V~~v---~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~~vl~~d~~~~~i~ls~K~~ 744 (1935)
..++.++|+|+.. ..+| |+.- ..++.+++++.+.|++...
T Consensus 12 ~~~~~~~G~Vk~fn~~kGfG-FI~~-~~gg~dvfvH~s~l~~~~~----------------------------------- 54 (101)
T 2bh8_A 12 LQSGKMTGIVKWFNADKGFG-FITP-DDGSKDVFVHFSAGSSGAA----------------------------------- 54 (101)
T ss_dssp ----CEEEEEEEEEGGGTEE-EEEE-SSSSCEEEEECCCSCSSSC-----------------------------------
T ss_pred cccccceeEEEEEECCCCCE-EEEe-CCCCcEEEEEEEEEecCCc-----------------------------------
Confidence 3567889999977 4568 5554 1346999999888875210
Q ss_pred hcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccc
Q 000173 745 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799 (1935)
Q Consensus 745 l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~ 799 (1935)
....+++|+.+.|.|.+++++|+||++.+++.||+|+|+++|.++
T Consensus 55 ----------~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 55 ----------VRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQA 99 (101)
T ss_dssp ----------CCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECCC
T ss_pred ----------cccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCcC
Confidence 013467899999999999999999999999999999999998754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.88 E-value=7.9e-05 Score=70.68 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
...|+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|+++++.+|.+..+|..++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45566666666666 6666666666666666654 46666666666667777777777777777677666666666666
Q ss_pred HHHc
Q 000173 1873 EIRL 1876 (1935)
Q Consensus 1873 e~k~ 1876 (1935)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.1e-05 Score=76.93 Aligned_cols=82 Identities=13% Similarity=-0.012 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1778 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1778 ~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al 1856 (1935)
.|.+.|+++++..|.+..+|+.++..+... ++++|...|++++...|.. ..+|..+|.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--SVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666666666666666666666 6666666666666666554 3566666666666666666666666666
Q ss_pred HhCCC
Q 000173 1857 SEYPK 1861 (1935)
Q Consensus 1857 ~~~Pk 1861 (1935)
...|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 66553
|
| >2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A | Back alignment and structure |
|---|
Probab=97.80 E-value=2.5e-05 Score=102.21 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=63.8
Q ss_pred CCCCCCc--EEEeEEEEEeeceEEEEEecCceeEEeeccccCc--cc-c-c--------CcccccCCCCEEEEEEEEEec
Q 000173 1464 SNLHVGD--IVIGQIKRVESYGLFITIENTNLVGLCHVSELSE--DH-V-D--------NIETIYRAGEKVKVKILKVDK 1529 (1935)
Q Consensus 1464 ~~~~~G~--~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~--~~-~-~--------~~~~~~~~Gd~V~~~Il~id~ 1529 (1935)
..-++|+ ++.|+|++|++||+||.|.+.+++||+|+|++++ ++ . . +....|++||.|+|+|+++|.
T Consensus 554 l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~ 633 (644)
T 2id0_A 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRM 633 (644)
T ss_dssp HGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEET
T ss_pred hhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeC
Confidence 3457899 9999999999999999996558999999999973 22 1 0 235679999999999999999
Q ss_pred CCCeeEEec
Q 000173 1530 EKRRISLGM 1538 (1935)
Q Consensus 1530 ~~~ri~lsl 1538 (1935)
++++|.|++
T Consensus 634 ~~~~I~~~l 642 (644)
T 2id0_A 634 ETRSIIARP 642 (644)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999986
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.3e-05 Score=77.55 Aligned_cols=91 Identities=14% Similarity=0.004 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------TDLW 1866 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~------~dlw 1866 (1935)
...|+.++..++.. ++++|...|++++...|.+ ..+|..+|..++..|++++|...|++++..+|.+ ..+|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 44566666666666 6666666666666666655 4666666666666666666666666666666665 5555
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 000173 1867 SIYLDQEIRLGDVDLIRGLF 1886 (1935)
Q Consensus 1867 ~~ya~~e~k~g~~e~ar~lf 1886 (1935)
..++..+...|+.+.|...|
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 55555555555544444333
|
| >3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.70 E-value=6.8e-05 Score=83.59 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=55.9
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc-------------------cCcccccCCCCEEEEEEE
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-------------------DNIETIYRAGEKVKVKIL 1525 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~-------------------~~~~~~~~~Gd~V~~~Il 1525 (1935)
...+|+++.|+|+++++||+||+|+ .++|++|++++.+++. ++....|+.||.|+++|+
T Consensus 78 ~p~~GEv~~G~Vs~vt~~GifV~lg--~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~ 155 (203)
T 3ayh_B 78 RPFRGEVMLGKIKSCSEEGIRVTIS--FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIE 155 (203)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS--SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEE
T ss_pred ccCCCCEEEEEEEEEeccEEEEEEe--CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEE
Confidence 4578999999999999999999994 5899999999977653 345568999999999999
Q ss_pred EEecCC
Q 000173 1526 KVDKEK 1531 (1935)
Q Consensus 1526 ~id~~~ 1531 (1935)
+++...
T Consensus 156 ~v~~~~ 161 (203)
T 3ayh_B 156 SEDFVD 161 (203)
T ss_dssp EEEECC
T ss_pred EEEccc
Confidence 998643
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00031 Score=66.50 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.+|...+++++|...|++++...|....+|+.++..+... ++++|...|++++...|.+ ..++..++.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Confidence 67888888888899999999999999988888889999999988888 9999999999999988876 57888888877
Q ss_pred HHcC
Q 000173 1840 FKNG 1843 (1935)
Q Consensus 1840 ~~~g 1843 (1935)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.65 E-value=2e-05 Score=78.06 Aligned_cols=94 Identities=10% Similarity=-0.014 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQT 1835 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~----~~~~~~~ 1835 (1935)
..|..++.++...+++++|.+.|++++...|.+..+|+.++..+... ++++|...|++++...|.+.. ..++...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999 999999999999999887622 3677777
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 000173 1836 AILEFKNGVADRGRSMFEG 1854 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~ 1854 (1935)
+..+...|+.+.|...|++
T Consensus 85 ~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHhHhhhHhHHHH
Confidence 8888777776666555544
|
| >2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=8.9e-05 Score=83.12 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=56.5
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc--------------cCcccccCCCCEEEEEEEEEec
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--------------DNIETIYRAGEKVKVKILKVDK 1529 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~--------------~~~~~~~~~Gd~V~~~Il~id~ 1529 (1935)
-.-.+|+++.|+|++|++||+||+|.+ -++|++|++++.+++. ++-...|+.||.|+++|.++|.
T Consensus 77 f~p~vGEv~~G~Is~Vt~fGifVeL~g-~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~ 155 (218)
T 2ckz_B 77 FKPFLGEIVTGWISKCTAEGIKVSLLG-IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVF 155 (218)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECTT-SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEE
T ss_pred ecCCCCCEEEEEEEEEccCcEEEEccC-ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEc
Confidence 356789999999999999999999964 5899999999976653 2335679999999999999996
Q ss_pred CCC
Q 000173 1530 EKR 1532 (1935)
Q Consensus 1530 ~~~ 1532 (1935)
..+
T Consensus 156 ~~~ 158 (218)
T 2ckz_B 156 VDV 158 (218)
T ss_dssp CCC
T ss_pred ccC
Confidence 554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00024 Score=69.57 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1829 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..+|..+|..++..|++++|...|+++++.+|.+..+|..++..+...|++++|...|++++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467777777777777777777777777777777777777777777777777777777777776
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0018 Score=74.98 Aligned_cols=110 Identities=10% Similarity=0.092 Sum_probs=85.6
Q ss_pred HHHHHHhCC-CCChHHHHHHHHHHHH-H--cC------CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc-----CC
Q 000173 1816 VQRALLSLP-RHKHIKFISQTAILEF-K--NG------VADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRL-----GD 1878 (1935)
Q Consensus 1816 l~ralk~~p-~~~~~~~~~~~a~le~-~--~g------~~e~Ar~ife~al~~~Pk~--~dlw~~ya~~e~k~-----g~ 1878 (1935)
+..++..+. .+...-+|...+..-+ . .| ....|+.+++++++.+|+- ...|..++.++.+. |+
T Consensus 140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 445555442 2222356666666443 2 23 3789999999999999995 44999999999995 99
Q ss_pred HHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 000173 1879 VDLIRGLFERAISLSLPPKK-MKFLFKKYLEYEKS-VGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1879 ~e~ar~lferal~~~~~pk~-~k~l~~~yl~~E~~-~G~~e~a~~v~~rAle 1928 (1935)
.++|+.+|+||+. +.|.. + ..+.-|.+|... .|+.+.+.+.+++|+.
T Consensus 220 ~ekA~~~ferAL~--LnP~~~i-d~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 220 MEKAHTAFEHLTR--YCSAHDP-DHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHHH--HCCTTCS-HHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 9999999999999 88764 6 688999999877 4999999999999986
|
| >2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0002 Score=93.81 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=61.7
Q ss_pred cCCCC--EEEEEEEEEecCeEEEEEC-CCeEEEeeCCccCc--cc-cc---------CcccCccCCCEEEEEEEEeeCCC
Q 000173 759 IHPNS--VVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVD--GQ-RA---------DLSKTYYVGQSVRSNILDVNSET 823 (1935)
Q Consensus 759 ~~~G~--~~~G~V~~i~~~G~fV~f~-~gl~Glv~~s~ls~--~~-~~---------~~~~~f~~Gq~V~~~V~~vd~e~ 823 (1935)
-++|+ .+.|+|++++++|+||++. +|+.||+|.|++++ ++ .- +....|++||.|+|+|.++|.++
T Consensus 556 ~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~ 635 (644)
T 2id0_A 556 DKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMET 635 (644)
T ss_dssp GGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTT
T ss_pred hccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCC
Confidence 35788 9999999999999999994 78999999999973 21 11 34567999999999999999999
Q ss_pred CeEEEee
Q 000173 824 GRITLSL 830 (1935)
Q Consensus 824 ~rl~LSl 830 (1935)
++|.+++
T Consensus 636 ~~I~~~l 642 (644)
T 2id0_A 636 RSIIARP 642 (644)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 9999986
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00025 Score=68.75 Aligned_cols=60 Identities=10% Similarity=-0.063 Sum_probs=28.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKHSCK-VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~~~~-vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
+..+...+++++|.+.|+++++..|.+.. +|+.++..+... ++++|...|+++++..|.+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 33444444444444444444444444444 444444444444 4444444444444444443
|
| >2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=85.66 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=61.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc-ccC---------CccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVE---------SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~-~~~---------~~~~~f~~G~~V~~kVl~vd~~~~ri~l 1445 (1935)
.++||+|.|+|+++..+|+||+|+...+|++|++++++. ++. +..+.|++||.|.|+|++++. ++.+.|
T Consensus 93 P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~-~~~i~L 171 (308)
T 2nn6_H 93 GEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS-DGAVSL 171 (308)
T ss_dssp CCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-TTEEEE
T ss_pred CCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC-CCCEEE
Confidence 578999999999999999999999778999999999753 321 244789999999999999994 778999
Q ss_pred EEec
Q 000173 1446 TLKT 1449 (1935)
Q Consensus 1446 Slk~ 1449 (1935)
|.|.
T Consensus 172 Str~ 175 (308)
T 2nn6_H 172 HTRS 175 (308)
T ss_dssp ECCS
T ss_pred EecC
Confidence 8875
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00032 Score=68.71 Aligned_cols=69 Identities=10% Similarity=-0.036 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
|.++.+|+.++..++.. ++++|...|++++...|... .+|..+|.++...|++++|...|+++++..|.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 55666666666666666 66666666666666666653 56666666666666666666666666666554
|
| >2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00014 Score=96.89 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=53.4
Q ss_pred cEEEeEEEEEeeceEEEEEecCceeEEeeccccC--cccc-----------cC----cccccCCCCEEEEEEEEEecC--
Q 000173 1470 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--EDHV-----------DN----IETIYRAGEKVKVKILKVDKE-- 1530 (1935)
Q Consensus 1470 ~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels--~~~~-----------~~----~~~~~~~Gd~V~~~Il~id~~-- 1530 (1935)
+++.|+|.+|.+||+||.|.+.+++||+|+|+++ +++. .+ ....|++||.|+|+|+.+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 7999999999999999999765899999999996 4331 12 257899999999999999988
Q ss_pred -CCeeEEecc
Q 000173 1531 -KRRISLGMK 1539 (1935)
Q Consensus 1531 -~~ri~lslK 1539 (1935)
++||.||||
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 699999986
|
| >2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00029 Score=88.06 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=63.9
Q ss_pred CCCCCCcEEEeEEEEEeec--eEEEEEecCceeEEeeccccCcccc---------cCcccccCCCCEEEEEEEEEecCCC
Q 000173 1464 SNLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSEDHV---------DNIETIYRAGEKVKVKILKVDKEKR 1532 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~--G~FV~l~~~~v~Gl~h~sels~~~~---------~~~~~~~~~Gd~V~~~Il~id~~~~ 1532 (1935)
....+|++|.|+|++|.++ |+||+|.+ +..||+|+|++++.+. .++.+.+++||.|.|.|++.....+
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~K 119 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK 119 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTC
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccC
Confidence 4567999999999999999 99999976 8899999999987763 3466789999999999999887777
Q ss_pred eeEEecc
Q 000173 1533 RISLGMK 1539 (1935)
Q Consensus 1533 ri~lslK 1539 (1935)
...|+..
T Consensus 120 Ga~lTt~ 126 (517)
T 2bx2_L 120 GAALTTF 126 (517)
T ss_dssp CCEEESS
T ss_pred CceEEee
Confidence 7666543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00035 Score=67.67 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=50.5
Q ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1798 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK-FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1798 ~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~-~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+..+..++.. ++++|...|+++++..|.+ .. +|..+|.+++..|++++|...|++++..+|.+..+|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3455566666 7888888888888877765 46 7777888888888888888888888888887777663
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0015 Score=83.24 Aligned_cols=121 Identities=11% Similarity=0.100 Sum_probs=77.2
Q ss_pred HHHcCChHHHHHHHHHHHHhcC-----C---CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh----CCCCChH---HHHH
Q 000173 1770 YERTEQNKLADELLYKMIKKFK-----H---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS----LPRHKHI---KFIS 1833 (1935)
Q Consensus 1770 ~~~~~~~~~A~el~~~~~k~~~-----~---~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~----~p~~~~~---~~~~ 1833 (1935)
+...|+|++|..+|++++.+.. + ...++.+++..|..+ ++++|..+|+++|.. ++.. |+ ..+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~ 397 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-NAQLGMAVM 397 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-CHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 3455666666666666665432 2 234455666666666 666666666666653 2222 22 5677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1834 QTAILEFKNGVADRGRSMFEGILSEY-----PKRT---DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1834 ~~a~le~~~g~~e~Ar~ife~al~~~-----Pk~~---dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
++|.++..+|++++|..+|++++... |++. ++...+.+.+..++.+++|..+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888887642 4443 3455566666677778888888877765
|
| >2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00017 Score=97.84 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=60.9
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccC--cccc-----------cC----cccccCCCCEEEEEEEEEecC-
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--EDHV-----------DN----IETIYRAGEKVKVKILKVDKE- 1530 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels--~~~~-----------~~----~~~~~~~Gd~V~~~Il~id~~- 1530 (1935)
|+++.|+|.+|++||+||.|.+.+++|++|+|+++ +++. ++ ....|++||.|+|+|..+|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 99999999999999999999766899999999997 4431 11 347899999999999999864
Q ss_pred --CCeeEEecc
Q 000173 1531 --KRRISLGMK 1539 (1935)
Q Consensus 1531 --~~ri~lslK 1539 (1935)
++||.||||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 489999987
|
| >2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00017 Score=84.56 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=64.0
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcc----cc------cCcccccCCCCEEEEEEEEEecCCCee
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED----HV------DNIETIYRAGEKVKVKILKVDKEKRRI 1534 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~----~~------~~~~~~~~~Gd~V~~~Il~id~~~~ri 1534 (1935)
-.++||+|.|+|+++.++|+||.|.. ...|++|+|+++.. +. .+..+.|++||.|.|+|++++ +.+.+
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s-~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~-~~~~i 169 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNS-RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVF-SDGAV 169 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSS-SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEE-TTTEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECC-CcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcC-CCCCE
Confidence 46899999999999999999999963 57899999999753 12 134578999999999999999 57889
Q ss_pred EEeccccccC
Q 000173 1535 SLGMKSSYFK 1544 (1935)
Q Consensus 1535 ~lslK~~~~~ 1544 (1935)
.||+|...++
T Consensus 170 ~LStr~~~LG 179 (308)
T 2nn6_H 170 SLHTRSLKYG 179 (308)
T ss_dssp EEECCSSTTC
T ss_pred EEEecCcCCc
Confidence 9999876553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0022 Score=66.86 Aligned_cols=106 Identities=8% Similarity=-0.089 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c-CHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQR 1818 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~----~-~~e~A~~ll~r 1818 (1935)
++|...|++|++..+..-. ++.+|......++|.+.|+++... .++..++.++.++.. . ++++|...|++
T Consensus 12 ~~A~~~~~~aa~~g~~~a~---lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 86 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC---LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSK 86 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH---HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHhhh---HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 5566666666666544333 555665555666666666666654 456666666666665 3 66666666666
Q ss_pred HHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~----~g~~e~Ar~ife~al~~ 1858 (1935)
|... .++..+..++.++.. .+++++|...|+++...
T Consensus 87 Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 87 ACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 6553 124555666666655 55666666666665544
|
| >3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00035 Score=77.85 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=53.5
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccc-------------------cCcccCccCCCEEEEEEEEee
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-------------------ADLSKTYYVGQSVRSNILDVN 820 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~-------------------~~~~~~f~~Gq~V~~~V~~vd 820 (1935)
..|+++.|.|++++++|+||++ |.+.|++|.+++.+++. ++....|++||.|++||.+++
T Consensus 80 ~~GEv~~G~Vs~vt~~GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 158 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEEGIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESED 158 (203)
T ss_dssp CTTCEEEEEEEEEETTEEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEE-eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEEE
Confidence 4799999999999999999999 78899999999976543 344556999999999999998
Q ss_pred CC
Q 000173 821 SE 822 (1935)
Q Consensus 821 ~e 822 (1935)
..
T Consensus 159 ~~ 160 (203)
T 3ayh_B 159 FV 160 (203)
T ss_dssp EC
T ss_pred cc
Confidence 64
|
| >2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0005 Score=85.94 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=64.5
Q ss_pred CCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEECccCCCcccC---------CccccCCCCcEEEEEEEEEeCCCCEEE
Q 000173 1376 LSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDGYVE---------SPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~--G~fV~l~~~v~g~V~~s~lsd~~~~---------~~~~~f~~G~~V~~kVl~vd~~~~ri~ 1444 (1935)
..+|+++.|+|++|.++ |+||++|.+..||+|++++++.|.. +..+.+++||.|.+.|+.....++...
T Consensus 43 ~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~ 122 (517)
T 2bx2_L 43 QKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAA 122 (517)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCE
T ss_pred CCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCce
Confidence 56899999999999999 9999999999999999999987743 355779999999999999877677777
Q ss_pred EEEecCc
Q 000173 1445 VTLKTSD 1451 (1935)
Q Consensus 1445 lSlk~~~ 1451 (1935)
||..-+.
T Consensus 123 lTt~isl 129 (517)
T 2bx2_L 123 LTTFISL 129 (517)
T ss_dssp EESSCCE
T ss_pred EEeeEEe
Confidence 6665443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0011 Score=64.09 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHc-C---HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1791 KHSCKVWLRRVQRLLKQ-Q---QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~---~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
|.++.+|..|+..++.. + .++|+.+|++||+..|.+ +..++.+|..+++.|++++|...|++++...|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~--~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN--EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34555555555555433 2 455555555555555554 355555555555555555555555555555554
|
| >1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00066 Score=80.61 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=70.8
Q ss_pred EEeccchhcchhcc--CCcccccc--CCCCEEEEEEEE----EecCeEEEEECC---CeEEEeeCCccCcccccCcccCc
Q 000173 738 LLSAKYSLINSAQQ--LPSDASHI--HPNSVVHGYVCN----IIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTY 806 (1935)
Q Consensus 738 ~ls~K~~l~~~~~~--~~~~~~~~--~~G~~~~G~V~~----i~~~G~fV~f~~---gl~Glv~~s~ls~~~~~~~~~~f 806 (1935)
..++|+.+...... --.-|+++ +.|++++|+|.+ +.+.++||.+.+ ++.|++|++++. |.+.|
T Consensus 103 aqtaKQvI~QkiREaEr~~i~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~ 176 (366)
T 1k0r_A 103 ATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESY 176 (366)
T ss_dssp TTTTTHHHHHHHHCCC--------CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccC
Confidence 34555555443221 01123444 489999999999 999999999976 599999999986 45889
Q ss_pred cCCCEEEEEEEEeeCCCCe--EEEeecccccCCCCchhhHHHHHHH
Q 000173 807 YVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASFMQEHFLLE 850 (1935)
Q Consensus 807 ~~Gq~V~~~V~~vd~e~~r--l~LSlk~~~~~~~d~~~i~~~l~~~ 850 (1935)
++||.|+|.|++|+.+.+. +.||. +.+.++..+|..+
T Consensus 177 ~~GDrVkvyV~~V~~~~kgpqI~LSR-------T~p~lv~~Lfe~E 215 (366)
T 1k0r_A 177 EHGNRLRCYVVGVTRGAREPLITLSR-------THPNLVRKLFSLE 215 (366)
T ss_dssp CTTCEEEEEEEEEECCSSSCEEEEES-------SCHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEecCCCccEEEEEe-------CChHHHHHHHHhc
Confidence 9999999999999988655 55554 3446677777654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.013 Score=70.70 Aligned_cols=171 Identities=6% Similarity=0.014 Sum_probs=91.3
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHH--HHcC---CHHHHHHHHHHHHHhccccchhhHHHH--
Q 000173 1655 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM--LSMA---DVEKARSIAERALQTINIREENEKLNI-- 1727 (1935)
Q Consensus 1655 ~~~~~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~--l~~~---e~dkAr~v~erAl~~i~~~ee~Ekl~l-- 1727 (1935)
++...-...+..+. .....+++....|.+..+|-.|++.. +..+ .+.+|+.+|++|++.-|. +-....
T Consensus 165 ei~~~I~~aL~~~l--~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~---~a~A~A~l 239 (372)
T 3ly7_A 165 DLLESLSKALNQPW--PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE---FTYARAEK 239 (372)
T ss_dssp HHHHHHHHHTTCCC--CHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHHHHHHhCchh--hHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 34444444444443 35566777788899888888887654 2222 356777777777765442 111112
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 000173 1728 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1807 (1935)
Q Consensus 1728 W~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~ 1807 (1935)
+++|+.+ ..++... ........+ |.+.. .++...+..+.+|..++..++..
T Consensus 240 a~a~~~~-~~~~~~~-~~~~~~l~~--------------------------a~~a~-~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 240 ALVDIVR-HSQHPLD-EKQLAALNT--------------------------EIDNI-VTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHH-HHHSCCC-HHHHHHHHH--------------------------HHHHH-HTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hccCCCc-hhhHHHHHH--------------------------HHHHH-HhcccCCcCHHHHHHHHHHHHhC
Confidence 2222211 1111100 110000111 11100 11122355666666666655555
Q ss_pred -CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1808 -QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1808 -~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
++++|...++||+...|. ...|..+|.++.-.|++++|...|++|+..+|..
T Consensus 291 gd~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 777777777777777642 3566666777777777777777777777777764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0031 Score=80.34 Aligned_cols=126 Identities=10% Similarity=0.064 Sum_probs=97.0
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCC---CCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPR---HKH---IKFISQTAILEFKNGVADRGRSMFEGILSEY-----PKRTD---LWSI 1868 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~---~~~---~~~~~~~a~le~~~g~~e~Ar~ife~al~~~-----Pk~~d---lw~~ 1868 (1935)
+..+ ++++|..+|+++|..... ..| ..++..+|.++..+|++++|..+|+++|..+ |.+.+ .++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4455 899999999999986422 233 3678889999999999999999999999763 44555 5889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CC---CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1869 YLDQEIRLGDVDLIRGLFERAISL---SL---PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1869 ya~~e~k~g~~e~ar~lferal~~---~~---~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
++.++..+|++++|+.+|++|+.. .+ .|.-+ .+.......+.+.+.++.++.+|.+|.+-.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~-~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK-DLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999962 12 23333 344444455666788899999999998744
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0045 Score=64.56 Aligned_cols=109 Identities=10% Similarity=-0.098 Sum_probs=92.1
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHH
Q 000173 1774 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRG 1848 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~----~g~~e~A 1848 (1935)
.++++|.+.|+++...- ++... ++.++... ..++|.+.|++|... .++..+..+|.+++. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35788999999999875 33333 77777777 888899999999986 246899999999998 8899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 000173 1849 RSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1849 r~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e~ar~lferal~~ 1892 (1935)
..+|+++... .+.+.+..++.++.. .++.++|...|++|...
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999999876 677889999999998 89999999999999983
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0086 Score=72.17 Aligned_cols=129 Identities=10% Similarity=0.003 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---------CHHHHHHHHHHHH--HhCCCCChHHHHHHHHHHHHHcCC
Q 000173 1776 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---------QQEGVQAVVQRAL--LSLPRHKHIKFISQTAILEFKNGV 1844 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~---------~~e~A~~ll~ral--k~~p~~~~~~~~~~~a~le~~~g~ 1844 (1935)
+.+|+++|+++++..|+...+|-.++..+... .....+..++++. ...|.. ..+|..+|..++-.|+
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~--a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL--SIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC--HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC--HHHHHHHHHHHHhCCC
Confidence 46777777777777777766666444433321 1122222333221 222333 5788888888887899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000173 1845 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~ 1909 (1935)
+++|...+++++..+|. ...|..++.++.-.|+.++|...|++|+. +.|...-..|..=+-|
T Consensus 293 ~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~~~l~F 354 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWIENGIF 354 (372)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHHhCcee
Confidence 99999999999999975 66778888889999999999999999999 5554443455544433
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.014 Score=63.63 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhc-----CCCHHHHHHHHHHHHH----cCC--hHHHH-HHHHHHHHhcCCC---------HHHHHHHHH
Q 000173 1744 EAVVKVFQRALQY-----CDPKKVHLALLGLYER----TEQ--NKLAD-ELLYKMIKKFKHS---------CKVWLRRVQ 1802 (1935)
Q Consensus 1744 e~a~~vferAl~~-----~~~~~v~~~l~~i~~~----~~~--~~~A~-el~~~~~k~~~~~---------~~vw~~~~~ 1802 (1935)
+..++.|++.++. .++..+|..|+.-... .+. -..-. .+++++++.|.+. .++|+.|+.
T Consensus 9 ~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~ 88 (202)
T 3esl_A 9 NQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYIN 88 (202)
T ss_dssp HHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 4556777777765 2445888888773332 222 12234 6788888776432 678888888
Q ss_pred HHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 000173 1803 RLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-DLWSIYLDQEIR 1875 (1935)
Q Consensus 1803 ~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~-dlw~~ya~~e~k 1875 (1935)
++.......++++|.-+...-=...+..+|..||.++...|++.+|..+|+.+++..-.=. .|...|..|..+
T Consensus 89 ~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 89 LFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred hhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 6621146688888888877766667778888999988888999999999998888764433 366667777654
|
| >2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00074 Score=75.72 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=53.4
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc--------------CCccccCCCCcEEEEEEEEEeCCC
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV--------------ESPEKEFPIGKLVAGRVLSVEPLS 1440 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~--------------~~~~~~f~~G~~V~~kVl~vd~~~ 1440 (1935)
.+|+++.|.|++|+++|+||+|...++|++|++++.++|. ++-...|++|+.|+++|.+++...
T Consensus 80 ~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~ 157 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVD 157 (218)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECC
T ss_pred CCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEccc
Confidence 4799999999999999999999547899999999977542 222456999999999999998644
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0043 Score=65.13 Aligned_cols=81 Identities=10% Similarity=-0.019 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEY-P-KRTDLWSIYLDQEIRLGDVDLIR 1883 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g---~~e~Ar~ife~al~~~-P-k~~dlw~~ya~~e~k~g~~e~ar 1883 (1935)
...+++.|.++++..+.. .++.++||..+.+.. +.++|..+|+.+++.. | .+.+.|+.++-.+.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~~~--~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCC--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 455666677766655433 467777777777666 4457777777777776 5 45667777777777777777777
Q ss_pred HHHHHHHh
Q 000173 1884 GLFERAIS 1891 (1935)
Q Consensus 1884 ~lferal~ 1891 (1935)
.+|+++++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777777
|
| >2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=74.05 Aligned_cols=70 Identities=31% Similarity=0.469 Sum_probs=60.9
Q ss_pred CCCEEEEEEEE----EEcCcCeEEEEeCC---ceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEe
Q 000173 1259 EGDIVGGRISK----ILSGVGGLVVQIGP---HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331 (1935)
Q Consensus 1259 ~G~iv~g~V~~----v~~~~~g~~V~l~~---~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd 1331 (1935)
.|++|+|+|.+ +.+. .++|+||. +.+|++|..|+. |.+.|++|+.|+|+|++++
T Consensus 7 ~GeIVtG~V~r~~~~v~~~--~ViVdlG~~~~k~EgiLP~~Eqi-----------------p~E~~~~GDrIkayV~~V~ 67 (251)
T 2asb_A 7 EGEIVAGVIQRDSRANARG--LVVVRIGTETKASEGVIPAAEQV-----------------PGESYEHGNRLRCYVVGVT 67 (251)
T ss_dssp TTCEEEEEEECCHHHHHTT--CEEEEECSSSSCEEEEECGGGSC-----------------TTCCCCTTCEEEEEEEEEE
T ss_pred CCCEEEEEEEEccccccCC--eEEEEeCCCCcceEEEEcHHHcC-----------------CCccCCCCCEEEEEEEEEE
Confidence 89999999999 7777 99999997 699999999873 6688999999999999999
Q ss_pred cCCCCceEEEEeecccc
Q 000173 1332 RTVRGTFHVELSLRSSL 1348 (1935)
Q Consensus 1332 ~~~~g~~~i~lSlr~s~ 1348 (1935)
...+| ..+.||+..+.
T Consensus 68 ~~~~g-pqIiLSRt~p~ 83 (251)
T 2asb_A 68 RGARE-PLITLSRTHPN 83 (251)
T ss_dssp CCSSS-CEEEEESSCHH
T ss_pred cCCCC-CEEEEEeccHH
Confidence 86543 68999987664
|
| >1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0013 Score=78.17 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=60.6
Q ss_pred hccCC--CCCEEEEEEEE----EeeceEEEEeCC---CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEE
Q 000173 1373 IEDLS--PNMIVQGYVKN----VTSKGCFIMLSR---KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443 (1935)
Q Consensus 1373 ~~~lk--~G~~v~G~V~~----v~~~G~fV~l~~---~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri 1443 (1935)
+.+|+ +|++|.|.|.+ +.+.++||+||. +++|++|.+++. |.+.|++||.|++.|++|+.+++..
T Consensus 123 ~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~kgp 196 (366)
T 1k0r_A 123 YGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREP 196 (366)
T ss_dssp ----CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSC
T ss_pred HHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCCcc
Confidence 34454 99999999999 999999999996 599999999987 5689999999999999999887666
Q ss_pred EEEEecCcc
Q 000173 1444 EVTLKTSDS 1452 (1935)
Q Consensus 1444 ~lSlk~~~~ 1452 (1935)
.+.|....+
T Consensus 197 qI~LSRT~p 205 (366)
T 1k0r_A 197 LITLSRTHP 205 (366)
T ss_dssp EEEEESSCH
T ss_pred EEEEEeCCh
Confidence 666655444
|
| >2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0014 Score=70.59 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=60.4
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
.++||+|-|.|+.+..++++|.|.+....|++|++.+. ...++....|++||.|.|+|..++. ...+.|+
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Lt 74 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIE 74 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEE
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecC-CCceEEE
Confidence 57899999999999999999999631589999999885 3346678899999999999999984 5688998
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0051 Score=64.30 Aligned_cols=128 Identities=13% Similarity=0.231 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc---CHHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHcCC
Q 000173 1777 KLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLSLPRHK-------HIKFISQTAILEFKNGV 1844 (1935)
Q Consensus 1777 ~~A~el~~~~~k~~--~~~~~vw~~~~~~l~~~---~~e~A~~ll~ralk~~p~~~-------~~~~~~~~a~le~~~g~ 1844 (1935)
..++..|+..+..+ .+...+|+.|+.+..+. .-..-..+++||++.+.... .+++|+.||.+.
T Consensus 7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~----- 81 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN----- 81 (152)
T ss_dssp HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB-----
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc-----
Confidence 34455566666555 34567777777777776 32335567777777664422 257777777652
Q ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1845 ADRGRSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~--Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
+.++.+|.-+...- -+...+|..||.++...|++.+|..+|+.++.. .......+-.+|-.|+.+
T Consensus 82 -~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~--~A~P~~rL~~~~~~F~~R 148 (152)
T 4a1g_A 82 -SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN--QAEPREFLQQQYRLFQTR 148 (152)
T ss_dssp -SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBSHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCccHHHHHHHHHHHHHH
Confidence 23677777766542 345667888888888888888888888888873 333344566666666543
|
| >2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0016 Score=70.12 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=61.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~-~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSl 1447 (1935)
.++||+|-|.|+.+..++.+|+|+. ..+|++|++++. ...++.+..|++||.|.|+|.+++. ++.+.||.
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Ltc 75 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIEC 75 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEES
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecC-CCceEEEe
Confidence 4689999999999999999999998 899999999886 4457788889999999999999985 56788883
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.02 Score=62.51 Aligned_cols=135 Identities=10% Similarity=0.053 Sum_probs=103.1
Q ss_pred ChHHHHHHHHHHHHh--c--CCCHHHHHHHHHHHHHc----CH--H-HHH-HHHHHHHHhCCCCC-------hHHHHHHH
Q 000173 1775 QNKLADELLYKMIKK--F--KHSCKVWLRRVQRLLKQ----QQ--E-GVQ-AVVQRALLSLPRHK-------HIKFISQT 1835 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~--~--~~~~~vw~~~~~~l~~~----~~--e-~A~-~ll~ralk~~p~~~-------~~~~~~~~ 1835 (1935)
+....+..|++.+.. + .+...+|+.|+.+.... .. + .-. .+++||++.+-... .+++|+.|
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 345677788887776 4 46689999999999877 22 1 133 78999999765532 26899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1836 AILEFKNGVADRGRSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~al~~~--Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
|.+. ..++...++.+|.-+...- -+...+|..||.++...|++.+|..+|+.++.... .....+-.+|-.|+.+
T Consensus 87 a~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A--~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 87 INLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC--RPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--BSHHHHHHHHHHHHHH
T ss_pred HHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--ccHHHHHHHHHHHHHH
Confidence 9976 3345779999999988763 45678899999999999999999999999999443 3344678888887765
|
| >2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0023 Score=71.88 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=65.9
Q ss_pred CCCCEEEEEEEE----EecCeEEEEECC---CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCC--CeEEEee
Q 000173 760 HPNSVVHGYVCN----IIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSL 830 (1935)
Q Consensus 760 ~~G~~~~G~V~~----i~~~G~fV~f~~---gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~--~rl~LSl 830 (1935)
+.|++++|+|.+ +.+..+||.+.. +..|++|++++. |.+.|++||.|+|.|++++.+. .++.||.
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLSR 79 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 79 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEEe
Confidence 479999999999 888999999965 599999999985 5688999999999999999875 6788886
Q ss_pred cccccCCCCchhhHHHHHHH
Q 000173 831 KQSCCSSTDASFMQEHFLLE 850 (1935)
Q Consensus 831 k~~~~~~~d~~~i~~~l~~~ 850 (1935)
. .+.++..+|..+
T Consensus 80 t-------~p~lvk~Lfe~E 92 (251)
T 2asb_A 80 T-------HPNLVRKLFSLE 92 (251)
T ss_dssp S-------CHHHHHHHHHHH
T ss_pred c-------cHHHHHHHHHhc
Confidence 4 446677777654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0068 Score=63.64 Aligned_cols=91 Identities=8% Similarity=0.012 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1776 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSL-PRHKHIKFISQTAILEFKNGVADRGRS 1850 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ralk~~-p~~~~~~~~~~~a~le~~~g~~e~Ar~ 1850 (1935)
...+++.|++.+...+.+.++.++|+-.+.+. +++++..+|+..++.. |. .+.+.++.+|..+++.|++++|+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHccCHHHHHH
Confidence 45677788888877778899999999999886 5668999999999987 42 235899999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHH
Q 000173 1851 MFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1851 ife~al~~~Pk~~dlw~ 1867 (1935)
.|+++|+..|.+.....
T Consensus 93 y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcCCCCHHHHH
Confidence 99999999999877544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0055 Score=59.25 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1829 IKFISQTAILEFKNGV---ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~---~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+.+|..+|+.++-.++ .++|+.+|+++|+.+|++...++.++..+++.|++++|...|++++.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6999999999975554 79999999999999999999999999999999999999999999998
|
| >2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0011 Score=90.04 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=60.0
Q ss_pred CCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccC--ccc---c--------cC----cccCccCCCEEEEEEEEeeCC-
Q 000173 762 NSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAV--DGQ---R--------AD----LSKTYYVGQSVRSNILDVNSE- 822 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~-gl~Glv~~s~ls--~~~---~--------~~----~~~~f~~Gq~V~~~V~~vd~e- 822 (1935)
|..+.|+|++++++|+||.+.+ |+.||+|.++++ +++ . .+ ....|++||.|+|+|.++|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 8999999999999999999997 999999999997 332 1 11 346799999999999999974
Q ss_pred --CCeEEEeec
Q 000173 823 --TGRITLSLK 831 (1935)
Q Consensus 823 --~~rl~LSlk 831 (1935)
++||.||||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 389999986
|
| >2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0011 Score=88.49 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=52.5
Q ss_pred CEEEEEEEEEecCeEEEEECC-CeEEEeeCCccC--ccc---c--------cC----cccCccCCCEEEEEEEEeeCC--
Q 000173 763 SVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAV--DGQ---R--------AD----LSKTYYVGQSVRSNILDVNSE-- 822 (1935)
Q Consensus 763 ~~~~G~V~~i~~~G~fV~f~~-gl~Glv~~s~ls--~~~---~--------~~----~~~~f~~Gq~V~~~V~~vd~e-- 822 (1935)
..+.|+|++++++|+||.+.+ |+.||+|.++++ +++ . .+ ....|++||.|+|+|+++|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 789999999999999999998 999999999995 332 1 12 257799999999999999988
Q ss_pred -CCeEEEeec
Q 000173 823 -TGRITLSLK 831 (1935)
Q Consensus 823 -~~rl~LSlk 831 (1935)
++||.||+|
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 699999986
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.022 Score=63.17 Aligned_cols=112 Identities=13% Similarity=0.257 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHc--C----HHHHHHHHHHHHHhCCCCCh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000173 1792 HSCKVWLRRVQRLLKQ--Q----QEGVQAVVQRALLSLPRHKH-------IKFISQTAILEFKNGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1792 ~~~~vw~~~~~~l~~~--~----~e~A~~ll~ralk~~p~~~~-------~~~~~~~a~le~~~g~~e~Ar~ife~al~~ 1858 (1935)
+...+|+.|+.+.... . -..-..+++||++.+..... +++|+.||.+ .+.++.+|.-+...
T Consensus 70 DPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~ 143 (223)
T 4aez_C 70 DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHH 143 (223)
T ss_dssp CTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHC
Confidence 4455566666555554 1 01134556666655543211 4566666653 13444555555443
Q ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000173 1859 Y--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1911 (1935)
Q Consensus 1859 ~--Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~ 1911 (1935)
- -+...+|..||.++...|++.+|..+|+.++....-| ...+-.+|-.|+.
T Consensus 144 ~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P--~~rL~~~~~~F~~ 196 (223)
T 4aez_C 144 HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP--FLRFQQKYQQFTH 196 (223)
T ss_dssp TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS--HHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--HHHHHHHHHHHHH
Confidence 2 2345556666666666666666666666666522222 2234455555443
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.017 Score=60.30 Aligned_cols=112 Identities=12% Similarity=0.112 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHc
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN---GVADRGRSMFEGILSEYPK---------RTDLWSIYLDQEIRL 1876 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~---g~~e~Ar~ife~al~~~Pk---------~~dlw~~ya~~e~k~ 1876 (1935)
...++..|+..|.....+..+.+|..|..+...+ |. ..-..++|++++.+.+ -..+|..|+++.
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 3557788999999887777789999999988743 44 3366889999877543 245899999983
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1877 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1877 g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
+.++.+|..+...+.-.+.+ .+|..|..+.+..|+.+.|..||+++++
T Consensus 82 ---~dp~~if~~L~~~~IG~~~A-lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 82 ---SDLHQFFEFLYNHGIGTLSS-PLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp ---SCHHHHHHHHHTTTTTTTBH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33899999999888887888 7999999999999999999999999876
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.038 Score=61.28 Aligned_cols=127 Identities=12% Similarity=0.102 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhc----CCCHHHHHHHHHHHHHc---CC--hHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQY----CDPKKVHLALLGLYERT---EQ--NKLADELLYKMIKKFKHS---------CKVWLRRVQRLL 1805 (1935)
Q Consensus 1744 e~a~~vferAl~~----~~~~~v~~~l~~i~~~~---~~--~~~A~el~~~~~k~~~~~---------~~vw~~~~~~l~ 1805 (1935)
+..+..|+++++. .++..+|..|+.-...+ |. -..-..+++++++.|.+. .++|+.|+.+
T Consensus 52 ~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~-- 129 (223)
T 4aez_C 52 QKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY-- 129 (223)
T ss_dssp HHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc--
Confidence 3345555555543 34557777776644332 11 123456777777776432 6778888873
Q ss_pred HcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 000173 1806 KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-DLWSIYLDQEIR 1875 (1935)
Q Consensus 1806 ~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~-dlw~~ya~~e~k 1875 (1935)
.+.++++|.-+...-=...+..+|..||.++...|++.+|..+|+.+++..-.=. .|...|..|..+
T Consensus 130 ---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 130 ---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp ---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 2456677877777665666778999999999999999999999999988764433 356666666544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.025 Score=55.70 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP-----RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p-----~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+.-.+.+|..++.. +++.|..-|+.|++..+ ......++..+|..+++.|+++.|...++++++..|.+..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 34445566666666 66666666666666541 2234567777777777777777777777777777777766655
Q ss_pred HHH
Q 000173 1868 IYL 1870 (1935)
Q Consensus 1868 ~ya 1870 (1935)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 544
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.025 Score=60.02 Aligned_cols=122 Identities=12% Similarity=0.208 Sum_probs=79.6
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHc--C--HH-HHHHHHHHHHHhCCCCCh-------HHHHHHHHHHHHHcCCHHHH
Q 000173 1783 LYKMIKKF--KHSCKVWLRRVQRLLKQ--Q--QE-GVQAVVQRALLSLPRHKH-------IKFISQTAILEFKNGVADRG 1848 (1935)
Q Consensus 1783 ~~~~~k~~--~~~~~vw~~~~~~l~~~--~--~e-~A~~ll~ralk~~p~~~~-------~~~~~~~a~le~~~g~~e~A 1848 (1935)
|+..+..+ .+...+|+.|+.+.... . .+ .-..+++||++.+..... +.+|+.||.+. + .+
T Consensus 6 fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~---~p 79 (164)
T 2wvi_A 6 FEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N---EP 79 (164)
T ss_dssp HHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---CH
T ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---CH
Confidence 44444333 35677888888887775 1 11 235678888887654322 57888888763 3 36
Q ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1849 RSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1849 r~ife~al~~~--Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
+.+|..+...- -+...+|..||.++...|++.+|..+|..++... ......+-.+|-.|+.+
T Consensus 80 ~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~--A~P~~~L~~~~~~F~~R 143 (164)
T 2wvi_A 80 LDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK--AEPLERLQSQHRQFQAR 143 (164)
T ss_dssp HHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHH
Confidence 66777776542 3456778888888888888888888888888833 33344567777776654
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.025 Score=59.92 Aligned_cols=108 Identities=6% Similarity=0.051 Sum_probs=83.9
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHH---cCCHH-HHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHH
Q 000173 1814 AVVQRALLSLPRHKHIKFISQTAILEFK---NGVAD-RGRSMFEGILSEYPKR---------TDLWSIYLDQEIRLGDVD 1880 (1935)
Q Consensus 1814 ~ll~ralk~~p~~~~~~~~~~~a~le~~---~g~~e-~Ar~ife~al~~~Pk~---------~dlw~~ya~~e~k~g~~e 1880 (1935)
..|+..|.....+..+.+|..|..+... .|..+ .-..++|++++.+-++ ..+|..|+++. +
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~ 77 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------N 77 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------S
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------C
Confidence 4577777665556668999999998764 23322 2367899999886442 44899999984 3
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1881 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.++.+|..+.....-.+-+ .||..|..+.+..|+...|..||+++++
T Consensus 78 ~p~~if~~L~~~~IG~~~A-lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLA-QFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4788999998877887778 7999999999999999999999999876
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.025 Score=70.74 Aligned_cols=84 Identities=8% Similarity=0.072 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHhCCC---CChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPR---HKHI---KFISQTAILEFKNGVADRGRSMFEGILSEY-----PKRTD---LWSIYLDQE 1873 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~---~~~~---~~~~~~a~le~~~g~~e~Ar~ife~al~~~-----Pk~~d---lw~~ya~~e 1873 (1935)
++++|..+|+++|..... ..|+ ..+..+|.++..+|++++|..+|+++|..+ |.+.+ .++.++.++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 788999999999885321 2233 567788888889999999999999998652 44444 478888888
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 000173 1874 IRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1874 ~k~g~~e~ar~lferal~ 1891 (1935)
..+|++++|..+|++|+.
T Consensus 393 ~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 999999999999999887
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.029 Score=70.24 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=69.1
Q ss_pred HcCChHHHHHHHHHHHHhcC-----CC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHh----CCCCChH---HHHHHH
Q 000173 1772 RTEQNKLADELLYKMIKKFK-----HS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLS----LPRHKHI---KFISQT 1835 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~-----~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~----~p~~~~~---~~~~~~ 1835 (1935)
..|+|++|..+|++++.+.. ++ ...+.+++..|..+ ++++|..+|+++|.. ++. .|+ ..+.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHH
Confidence 35789999999999998652 33 45677899999999 999999999999875 332 233 578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 000173 1836 AILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~al 1856 (1935)
|.++..+|++++|..+|++|+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHH
Confidence 999999999999999999985
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.054 Score=53.19 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEY-------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~-------Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
.-...+|..++..|++++|...|+.|++.. +.+.+++..++..+.+.|+++.|..++++++. +.|...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 456788999999999999999999999874 34688999999999999999999999999998 666655
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.13 Score=64.43 Aligned_cols=88 Identities=13% Similarity=0.012 Sum_probs=70.4
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCC---CCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPR---HKH---IKFISQTAILEFKNGVADRGRSMFEGILSEY-----PKRTD---LWSI 1868 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~---~~~---~~~~~~~a~le~~~g~~e~Ar~ife~al~~~-----Pk~~d---lw~~ 1868 (1935)
+..+ ++++|..+|+++|..... ..| ..++..+|.++..+|++++|..+++++|..+ |.+.+ .++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3344 889999999999975322 233 3678888888999999999999999998653 44444 5888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1869 YLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1869 ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
++.++..+|++++|..+|++|+.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999997
|
| >2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.04 Score=64.07 Aligned_cols=71 Identities=8% Similarity=0.030 Sum_probs=60.9
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
-.++||+|-|+|+++....+.|.|.. ...|++|.+++. ...++....|++||.|.|+|++++ ....+.|++
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~s-~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~-~~~~~eLsc 194 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVAN-KDMEPEMVC 194 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECSS-SSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECC-TTSCCEEEC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECC-CceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcC-CCCceEEEe
Confidence 35899999999999999999999975 688999999875 334567889999999999999998 456788887
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.12 Score=64.67 Aligned_cols=90 Identities=10% Similarity=0.017 Sum_probs=68.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhcC-----CC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHh----CCCCChH---HHH
Q 000173 1769 LYERTEQNKLADELLYKMIKKFK-----HS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLS----LPRHKHI---KFI 1832 (1935)
Q Consensus 1769 i~~~~~~~~~A~el~~~~~k~~~-----~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~----~p~~~~~---~~~ 1832 (1935)
-+.+.+++++|.++|++++.+.. .+ ..++.+++..|..+ ++++|..+++++|.. +|.. |+ ..+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~l 374 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-HPVRGVQV 374 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHHHHH
Confidence 34567888999999999887642 22 55677788888888 999999999988864 3332 33 567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~~ 1859 (1935)
.++|.++..+|++++|..+|++++...
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 788888889999999999999988764
|
| >2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.046 Score=63.56 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=62.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
.++||+|-|+|+++....+.|+|+....|.++++++. ...++.+..|++||.|.|+|++++. .+.++||.-
T Consensus 125 P~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc~ 195 (289)
T 2nn6_G 125 PVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCI 195 (289)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECS
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEec
Confidence 4789999999999999999999999999999999876 3457788899999999999999984 567888773
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.14 Score=51.71 Aligned_cols=81 Identities=11% Similarity=-0.003 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR---GRSMFEGILSEY-P-KRTDLWSIYLDQEIRLGDVDLIR 1883 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~---Ar~ife~al~~~-P-k~~dlw~~ya~~e~k~g~~e~ar 1883 (1935)
...+++.|.+++...+.. ..+.+.||..+.+..++.. |..+++.++... | .+-+..+.++-.+.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~~~~s--~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSCCC--HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444444444433222 3444455554444443322 555555555444 3 23344444444555555555555
Q ss_pred HHHHHHHh
Q 000173 1884 GLFERAIS 1891 (1935)
Q Consensus 1884 ~lferal~ 1891 (1935)
.+++.+|.
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.19 E-value=3.5 Score=50.30 Aligned_cols=171 Identities=10% Similarity=0.077 Sum_probs=106.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHH-----
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVH----- 1763 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~----- 1763 (1935)
+.++..+.+.++.++.+++......-.+.-.-..-..+-..++++.....+ +.+.-.++...+++-.... ..|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDA-GTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777776665443221110000001223334443333322 3444455555555433221 333
Q ss_pred -HHHHHHHHHcCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC---C--CChHH
Q 000173 1764 -LALLGLYERTEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP---R--HKHIK 1830 (1935)
Q Consensus 1764 -~~l~~i~~~~~~~~~A~el~~~~~k~~~~------~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p---~--~~~~~ 1830 (1935)
.+++.+|...++|.+|.+++.++.+.... ..+++..-++++... ++.+++.+|.+|.+... . .-...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 37899999999999999999999876532 245566677777777 99999999998876431 1 11235
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Q 000173 1831 FISQTAILEF-KNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1831 ~~~~~a~le~-~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
+...-|.+++ ..+++..|...|-.++..+..
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 6666677888 799999999999999877644
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.37 Score=48.79 Aligned_cols=95 Identities=8% Similarity=0.026 Sum_probs=78.6
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHcCCHH
Q 000173 1772 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSL-PRHKHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ralk~~-p~~~~~~~~~~~a~le~~~g~~e 1846 (1935)
.......+++.|++....-+.+...-++||-.+.+. +..++..+|+..++.. |. ..-...+.+|..+++.|+++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHhhhHH
Confidence 344567889999999887778999999999999988 4455888899888775 31 22488999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHH
Q 000173 1847 RGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1847 ~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+|+..++.+|+..|.+..+..
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999877643
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.59 E-value=1.5 Score=53.49 Aligned_cols=92 Identities=10% Similarity=-0.061 Sum_probs=42.0
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCC---C-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C-C--CHHHH
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPR---H-KHIKFISQTAILEFKNGVADRGRSMFEGILSEY----P-K--RTDLW 1866 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~---~-~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~----P-k--~~dlw 1866 (1935)
+++.+++.. ++.+|.+++.+.++.+.. . ..++++..-.++++..++..+++.+|.++.+.. | . ...+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 345555555 555555555555554432 1 112444444555555555555555555554321 1 1 11133
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHH
Q 000173 1867 SIYLDQEI-RLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1867 ~~ya~~e~-k~g~~e~ar~lferal 1890 (1935)
..-+.+++ ..+++..|...|-.+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 33444444 4555555555554443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.77 E-value=2.1 Score=57.61 Aligned_cols=166 Identities=14% Similarity=-0.049 Sum_probs=91.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1769 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i 1769 (1935)
...+.++...+..+.|..+.+... .-+.+....| ..+.|.++ .+..+....|..++.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~----------------~~f~~~l~~~--~~~~A~~~----~~~~~~~~~W~~la~~ 690 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD----------------QKFELALKVG--QLTLARDL----LTDESAEMKWRALGDA 690 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH----------------HHHHHHHHHT--CHHHHHHH----HTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc----------------hheehhhhcC--CHHHHHHH----HHhhCcHhHHHHHHHH
Confidence 566677777888777766553221 1123445667 34666554 3445667888888888
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000173 1770 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1849 (1935)
Q Consensus 1770 ~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar 1849 (1935)
+.+.++++.|.++|.++- +++.+..+|.. ... .+.+..++......|+++.|.
T Consensus 691 al~~~~~~~A~~~y~~~~--------------------d~~~l~~l~~~-----~~~--~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 691 SLQRFNFKLAIEAFTNAH--------------------DLESLFLLHSS-----FNN--KEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp HHHTTCHHHHHHHHHHHT--------------------CHHHHHHHHHH-----TTC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHcc--------------------ChhhhHHHHHH-----cCC--HHHHHHHHHHHHHcCchHHHH
Confidence 888888888888888763 12333222222 011 233444445445555555555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHHcCCHH
Q 000173 1850 SMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK--MKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1850 ~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~--~k~l~~~yl~~E~~~G~~e 1917 (1935)
.+|.++ .-+...++++.+.++.++|..+-++ ..|.. +..+...|.+.....|..+
T Consensus 744 ~~~~~~--------g~~~~a~~~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 744 NAYWIA--------GDIQGAKDLLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHH--------TCHHHHHHHHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHc--------CCHHHHHHHHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHhccchh
Confidence 554432 1122334555556666666665554 33333 4455555555555556543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=91.45 E-value=2.4 Score=57.17 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=101.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-
Q 000173 1729 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1807 (1935)
Q Consensus 1729 ~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~- 1807 (1935)
...+.+....+ ..+.|.++.+ ... ....++.+.++++.|.++.+. .++...|..+|+.++++
T Consensus 633 ~~~~~~l~~~~--~~~~a~~~~~-------~~~---~~f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQE--YYEEALNISP-------DQD---QKFELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTT--CHHHHHHHCC-------CHH---HHHHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC--ChHHheecCC-------Ccc---hheehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcC
Confidence 44455556667 3355544332 221 113455678999999888533 36889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
+++.|.++|.++ .+ |.....++...|+.+....+-+.+... .. +.....++++.|++++|..+|.
T Consensus 696 ~~~~A~~~y~~~-----~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~-~~----~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 696 NFKLAIEAFTNA-----HD-----LESLFLLHSSFNNKEGLVTLAKDAETT-GK----FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp CHHHHHHHHHHH-----TC-----HHHHHHHHHHTTCHHHHHHHHHHHHHT-TC----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----cC-----hhhhHHHHHHcCCHHHHHHHHHHHHHc-Cc----hHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999987 12 334455555688888777665555442 22 2333445667899999999987
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHH----HHHHHHHHHH
Q 000173 1888 RAISLSLPPKKMKFLFKKYLEYEKSVGEEE----RIEYVKQKAM 1927 (1935)
Q Consensus 1888 ral~~~~~pk~~k~l~~~yl~~E~~~G~~e----~a~~v~~rAl 1927 (1935)
.+- -|...+.+-+.++..+ .+.+.+...+
T Consensus 761 ~~~-----------~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L 793 (814)
T 3mkq_A 761 KSQ-----------RFSEAAFLGSTYGLGDNEVNDIVTKWKENL 793 (814)
T ss_dssp HTT-----------CHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HcC-----------ChHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 622 2566667777888655 4444444444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.16 E-value=1.6 Score=57.65 Aligned_cols=58 Identities=5% Similarity=-0.020 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
+...-|.|+...|+++-|..+-.+++...|.....|..++..|+..|+++.|.-.+..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 4455566777788888888888888888888888888888888888888887766654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.70 E-value=1.1 Score=45.44 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1829 IKFISQTAILEFKNGV---ADRGRSMFEGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~---~e~Ar~ife~al~~~Pk-~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..-+.||..+.+..+ ..+|..+++.+++..|. +-+.|+.++--+.+.|++++|+.+.++++.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3555555555554443 33555666666655552 345555555556666666666666666665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.48 E-value=2.7 Score=56.64 Aligned_cols=116 Identities=9% Similarity=-0.058 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHH
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL--PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE-YPKRTDLW 1866 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~--p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~-~Pk~~dlw 1866 (1935)
......+..++..|.+. +.++|.++|.++-... .-...+..|..+..-+.+.|+.++|+.+|+..... ..-+.-.+
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34456788899999999 9999999998765321 01122588999999999999999999999998765 23356678
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000173 1867 SIYLDQEIRLGD-VDLIRGLFERAISLSLPPKKMKFLFKKYLE 1908 (1935)
Q Consensus 1867 ~~ya~~e~k~g~-~e~ar~lferal~~~~~pk~~k~l~~~yl~ 1908 (1935)
+.+++-+.+.|. .+.|..+|+......+.|+.. ++...+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v--tY~~ll~ 244 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL--FTAVLLS 244 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH--HHHSCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh--hcccccC
Confidence 888888899887 478999999999988888764 5554554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.44 E-value=22 Score=44.18 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCchhH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSE-Y---PK--RTDLWSIYLDQEIRLGDVDLIRGLFERAIS----LSLPPKKM 1899 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~-~---Pk--~~dlw~~ya~~e~k~g~~e~ar~lferal~----~~~~pk~~ 1899 (1935)
.+...+|.+++..|++.+|..++..+... + ++ ..++|..-++++...+|+.+|+.++.++.. ...+|.-.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 45566667777777777777777666532 1 11 133555556666666777777776666532 11222211
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
-.++..++.+....+++.+|-..|..+.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1233333344444455555554444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.24 E-value=4.2 Score=41.84 Aligned_cols=71 Identities=7% Similarity=0.055 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1793 SCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
+...-++|+-.+.+. +..++..+++..+...|... -+..+.+|.-+++.|++++||...+.+|+..|.+..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~-RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 444445555444444 33444455555555444321 244555555555555555555555555555555533
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.06 E-value=3.1 Score=56.04 Aligned_cols=96 Identities=9% Similarity=-0.025 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQ-----YCDPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLR 1799 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~-----~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~-~~~~~~vw~~ 1799 (1935)
..+.++++.+-+.| ..+.|.++|+++-+ ..|+-..|..+++-|.+.|+.++|.++|++|... +..+.-.|..
T Consensus 128 ~TynaLIdglcK~G--~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 128 QRLLAFFKCCLLTD--QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45778888888888 56888988876543 3566688889999999999999999999888765 3567778888
Q ss_pred HHHHHHHc-C-HHHHHHHHHHHHHhC
Q 000173 1800 RVQRLLKQ-Q-QEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1800 ~~~~l~~~-~-~e~A~~ll~ralk~~ 1823 (1935)
++..+-+. + .++|.++|+.|...-
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88887777 4 578888888888764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.90 E-value=8.4 Score=48.08 Aligned_cols=172 Identities=11% Similarity=0.020 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCC-
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ----YCDP- 1759 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~-i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~----~~~~- 1759 (1935)
..++..++..+++.|++.+|..+....... ...-+..+++.+|+.-+.++...++ ..+|+.+++++.. ..++
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d--~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD--YSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhhcccCCcH
Confidence 467789999999999999999999887653 3333456778999999999999995 4999999998753 2222
Q ss_pred H---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC--CCHHHHHHH---HH-HHHHc--CHHHHHHHHHHHHHhCCCCCh
Q 000173 1760 K---KVHLALLGLYERTEQNKLADELLYKMIKKFK--HSCKVWLRR---VQ-RLLKQ--QQEGVQAVVQRALLSLPRHKH 1828 (1935)
Q Consensus 1760 ~---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~--~~~~vw~~~---~~-~l~~~--~~e~A~~ll~ralk~~p~~~~ 1828 (1935)
. .++..++.++...++|.+|...|..+...+. .+..-|... +- +.+-. ..+. ..++.+..+ .+....
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~-~~ll~~~~~-~~~~~~ 292 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQ-NDLIHKIQN-DNNLKK 292 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTT-HHHHHSHHH-HSSCHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchH-HHHHHHHhh-cccccc
Confidence 2 7778888899999999999999999987662 344444321 11 11111 1111 112222222 223334
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCC
Q 000173 1829 IKFISQTAILEFKN--GVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~--g~~e~Ar~ife~al~~~Pk 1861 (1935)
++.+..++..+... .+++.....|+..+..+|.
T Consensus 293 l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 293 LESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp HHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred cHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 56666666666543 3677777777777766553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.12 E-value=11 Score=40.45 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1819 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ra 1819 (1935)
+...|..++...+.+ +++-|.+.|+++
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 444455555544444 454444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.06 E-value=3.2 Score=42.18 Aligned_cols=88 Identities=6% Similarity=0.004 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1777 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1852 (1935)
Q Consensus 1777 ~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~if 1852 (1935)
...++.|++=+ .-..++..-++||-.+.+. +..++..+++..++..|... -+.++.+|.-+++.|++++|+...
T Consensus 24 ~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~-Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 24 EILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-RECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp HHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh-HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34455554422 3345889999999989887 56688899999999887442 489999999999999999999999
Q ss_pred HHHHHhCCCCHHHH
Q 000173 1853 EGILSEYPKRTDLW 1866 (1935)
Q Consensus 1853 e~al~~~Pk~~dlw 1866 (1935)
+.+|+..|.+..+-
T Consensus 102 d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 102 DTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHTTCTTCHHHH
T ss_pred HHHHhhCCCCHHHH
Confidence 99999999997653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.64 E-value=5.6 Score=40.92 Aligned_cols=85 Identities=13% Similarity=0.023 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRG 1884 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~---~e~Ar~ife~al~~~Pk-~~dlw~~ya~~e~k~g~~e~ar~ 1884 (1935)
....++-|.+-+. .....+..+.||..+.+..+ ..+|..+++.++...|. +-+..+.++--+.+.|++++||.
T Consensus 22 L~~lr~qY~~E~~---~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~ 98 (144)
T 1y8m_A 22 LEILRQQVVSEGG---PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR 98 (144)
T ss_dssp HHHHHHHHHHTTS---TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHhcc---CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHH
Confidence 4455555555422 13446899999999998775 56899999999999994 56777888888999999999999
Q ss_pred HHHHHHhcCCCchh
Q 000173 1885 LFERAISLSLPPKK 1898 (1935)
Q Consensus 1885 lferal~~~~~pk~ 1898 (1935)
+.+++|+ ..|.+
T Consensus 99 y~d~lL~--~eP~n 110 (144)
T 1y8m_A 99 YVDTLFE--HERNN 110 (144)
T ss_dssp HHHHHHH--TCCCC
T ss_pred HHHHHHh--cCCCc
Confidence 9999999 54443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.38 E-value=4 Score=43.10 Aligned_cols=25 Identities=4% Similarity=-0.104 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1864 DLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1864 dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
++-+..+..+++.++.+.|..+++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 3444444444455555555554443
|
| >2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A | Back alignment and structure |
|---|
Probab=83.38 E-value=1.4 Score=55.14 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=47.0
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
++|+.+.|.| |++. +..|++|++++..+ -.....|+.||.|+++|.++|+.+++|.+..
T Consensus 402 ~~g~~f~g~v---------v~l~--~~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVV---------VDRR--GAQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEE---------EEEE--TTEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEE---------EEEe--CcEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 6788888865 4454 35899999999765 2334679999999999999999999998754
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.39 E-value=8.9 Score=46.91 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=77.8
Q ss_pred HHcCChHHHHHHHHHHHHhcCCC--H----HHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000173 1771 ERTEQNKLADELLYKMIKKFKHS--C----KVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1844 (1935)
Q Consensus 1771 ~~~~~~~~A~el~~~~~k~~~~~--~----~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~ 1844 (1935)
...++.+.|.+.+.+++..|... . .-|..- .+..|+... ..+...++..+...|+
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~-----------~r~~l~~~~--------~~a~~~~~~~~l~~g~ 186 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEP-----------FATALVEDK--------VLAHTAKAEAEIACGR 186 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHH-----------HHHHHHHHH--------HHHHHHHHHHHHHTTC
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHH-----------HHHHHHHHH--------HHHHHHHHHHHHHCCC
Confidence 34688999999999999887422 1 113221 122222221 2445667888889999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1845 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+++|...+++++..+|-+..+|..++..+...|+...|...|+++-.
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988754
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.30 E-value=5.9 Score=49.25 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----CH-
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD----PK- 1760 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~----~~- 1760 (1935)
..++..++.++++.|++++|.++|.++...... ...++++|+..+.++..++++ ..+...+++|-.... +.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~kid~~l~~irl~l~~~d~--~~~~~~~~ka~~~~~~~~d~~~ 206 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS--TGAKIDVMLTIARLGFFYNDQ--LYVKEKLEAVNSMIEKGGDWER 206 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--CCSHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhhhcCCCHHH
Confidence 346788999999999999999999999875443 346789999999999999954 999999999976542 21
Q ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 000173 1761 --KVHLALLGLYERTEQNKLADELLYKMIKKFK 1791 (1935)
Q Consensus 1761 --~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~ 1791 (1935)
.+....+.++...++|..|...|-.++..|.
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 3444445556678999999999999988774
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.51 E-value=10 Score=40.00 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~ 1858 (1935)
.++..||+.+|..+++-+|...|+++|+.
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1935 | ||||
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 1e-31 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 2e-17 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 1e-13 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 3e-11 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 5e-11 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 2e-08 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 3e-04 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 6e-04 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 0.002 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 0.002 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 1e-16 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 6e-14 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 8e-10 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 7e-09 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 2e-07 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 0.001 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 0.003 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 2e-14 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 2e-08 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 1e-06 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 4e-06 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 9e-06 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 2e-05 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 4e-14 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 3e-07 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 1e-06 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 1e-06 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 1e-05 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 2e-04 | |
| d2z0sa1 | 88 | b.40.4.5 (A:60-147) S1-domain of exosome complex R | 5e-13 | |
| d2z0sa1 | 88 | b.40.4.5 (A:60-147) S1-domain of exosome complex R | 1e-07 | |
| d2z0sa1 | 88 | b.40.4.5 (A:60-147) S1-domain of exosome complex R | 2e-05 | |
| d2z0sa1 | 88 | b.40.4.5 (A:60-147) S1-domain of exosome complex R | 3e-04 | |
| d2z0sa1 | 88 | b.40.4.5 (A:60-147) S1-domain of exosome complex R | 4e-04 | |
| d1wi5a_ | 119 | b.40.4.5 (A:) S1-domain of RRP5 protein homolog (P | 6e-13 | |
| d1wi5a_ | 119 | b.40.4.5 (A:) S1-domain of RRP5 protein homolog (P | 2e-09 | |
| d1wi5a_ | 119 | b.40.4.5 (A:) S1-domain of RRP5 protein homolog (P | 2e-06 | |
| d1wi5a_ | 119 | b.40.4.5 (A:) S1-domain of RRP5 protein homolog (P | 2e-04 | |
| d1wi5a_ | 119 | b.40.4.5 (A:) S1-domain of RRP5 protein homolog (P | 6e-04 | |
| d1wi5a_ | 119 | b.40.4.5 (A:) S1-domain of RRP5 protein homolog (P | 7e-04 | |
| d1e3pa2 | 62 | b.40.4.5 (A:656-717) S1 RNA-binding domain of poly | 2e-12 | |
| d1e3pa2 | 62 | b.40.4.5 (A:656-717) S1 RNA-binding domain of poly | 3e-07 | |
| d1e3pa2 | 62 | b.40.4.5 (A:656-717) S1 RNA-binding domain of poly | 1e-06 | |
| d1e3pa2 | 62 | b.40.4.5 (A:656-717) S1 RNA-binding domain of poly | 3e-04 | |
| d2je6i1 | 87 | b.40.4.5 (I:66-152) S1-domain of exosome complex R | 1e-11 | |
| d2je6i1 | 87 | b.40.4.5 (I:66-152) S1-domain of exosome complex R | 6e-07 | |
| d2je6i1 | 87 | b.40.4.5 (I:66-152) S1-domain of exosome complex R | 4e-05 | |
| d2je6i1 | 87 | b.40.4.5 (I:66-152) S1-domain of exosome complex R | 1e-04 | |
| d2je6i1 | 87 | b.40.4.5 (I:66-152) S1-domain of exosome complex R | 2e-04 | |
| d2ba0a1 | 83 | b.40.4.5 (A:53-135) S1-domain of exosome complex R | 4e-11 | |
| d2ba0a1 | 83 | b.40.4.5 (A:53-135) S1-domain of exosome complex R | 1e-07 | |
| d2ba0a1 | 83 | b.40.4.5 (A:53-135) S1-domain of exosome complex R | 3e-05 | |
| d2ba0a1 | 83 | b.40.4.5 (A:53-135) S1-domain of exosome complex R | 4e-05 | |
| d2ba0a1 | 83 | b.40.4.5 (A:53-135) S1-domain of exosome complex R | 7e-04 | |
| d1go3e1 | 106 | b.40.4.5 (E:79-184) C-terminal domain of RNA polym | 1e-10 | |
| d1y14b1 | 91 | b.40.4.5 (B:81-171) C-terminal domain of RNA polym | 5e-10 | |
| d1y14b1 | 91 | b.40.4.5 (B:81-171) C-terminal domain of RNA polym | 0.002 | |
| d2ix0a3 | 87 | b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Esche | 8e-10 | |
| d2ix0a3 | 87 | b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Esche | 0.002 | |
| d2nn6h1 | 95 | b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-pro | 4e-09 | |
| d2c35b1 | 94 | b.40.4.5 (B:78-171) C-terminal domain of RNA polym | 4e-07 | |
| d2nn6g1 | 88 | b.40.4.5 (G:107-194) S1-domain of exosome componen | 4e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-06 | |
| d2ja9a1 | 90 | b.40.4.5 (A:62-151) S1-domain of exosome component | 2e-05 | |
| d1hh2p1 | 72 | b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga | 9e-05 | |
| d2nn6i1 | 125 | b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {H | 0.004 |
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 125 bits (313), Expect = 1e-31
Identities = 42/284 (14%), Positives = 105/284 (36%), Gaps = 39/284 (13%)
Query: 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLS--------MADVEKARSIAERALQTINIREEN 1722
TP E +++ +W KY+ + S ++ E+ L + +
Sbjct: 1 TPQEAQQVD--------MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPD- 51
Query: 1723 EKLNIWVAYFNLENEYGNPPE------------EAVVKVFQRALQYCDPK--KVHLALLG 1768
IW + + +++RA+ K ++ A
Sbjct: 52 ----IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107
Query: 1769 LYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRH 1826
E + + + +++ V+++ ++ + + + + + ++A
Sbjct: 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167
Query: 1827 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1886
H+ +++ + + + +FE L +Y + Y+D L + + R LF
Sbjct: 168 HHV-YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 226
Query: 1887 ERAI-SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929
ER + S SLPP+K ++ ++L +E ++G+ I V+++
Sbjct: 227 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 77.2 bits (190), Expect = 2e-17
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1453 RTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1511
+TA E + +L +L G ++ G + V ++G F+ I + GL H+S LSE V +
Sbjct: 2 KTAEFQEGVESLKDLKPGMVLEGVVTNVTNFGAFVDIGV-HQDGLVHISALSEKFVKDPY 60
Query: 1512 TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541
+ +AG+ VKVK+++VD + R+ L M+ S
Sbjct: 61 EVVKAGDIVKVKVMEVDIPRNRVGLSMRMS 90
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 66.1 bits (161), Expect = 1e-13
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
K + F+ V + D+KPGMV++G V V +FGA V L + +SE + P +
Sbjct: 2 KTAEFQEGVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYE 61
Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKT 568
K G + +V+ V R+ ++ + +
Sbjct: 62 VVKAGDIVKVKVMEVDIPRNRVGLSMRMS 90
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 59.1 bits (143), Expect = 3e-11
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
+ +E ++DL P M+++G V NVT+ G F+ + D V +S LS+ +V+ P + G
Sbjct: 8 EGVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGD 67
Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDS 1452
+V +V+ V+ RV ++++ SD+
Sbjct: 68 IVKVKVMEVDIPRNRVGLSMRMSDT 92
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 58.7 bits (142), Expect = 5e-11
Identities = 18/77 (23%), Positives = 31/77 (40%)
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
+ P V+ G V N+ G FV G S + D + G V+ +
Sbjct: 14 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 73
Query: 817 LDVNSETGRITLSLKQS 833
++V+ R+ LS++ S
Sbjct: 74 MEVDIPRNRVGLSMRMS 90
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 51.4 bits (123), Expect = 2e-08
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
+ G +T + G FV G S L +P + G +VK ++M
Sbjct: 21 VLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPR 80
Query: 648 RRINLSFMMKPT 659
R+ LS M+ +
Sbjct: 81 NRVGLS--MRMS 90
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.5 bits (92), Expect = 3e-04
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
+ G ++ G ++ + + G V IG H G VH + L DP
Sbjct: 16 LKPGMVLEGVVTNVTN--FGAFVDIGVHQDGLVHISALSEKF-----------VKDPYEV 62
Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
G VK KV+E+ V LS+R S
Sbjct: 63 VKAGDIVKVKVMEVDIPRN---RVGLSMRMS 90
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.7 bits (90), Expect = 6e-04
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 315 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
S+ L PGM++ V ++ G + + G V I L F ++ V
Sbjct: 12 SLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEV-VKAGDIVK 70
Query: 375 ARILFVDPTSRAVGLTL 391
+++ VD VGL++
Sbjct: 71 VKVMEVDIPRNRVGLSM 87
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 37.2 bits (86), Expect = 0.002
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 865 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD-----VYGFITHHQLAGATVESGSV 919
++ ++ G V+EG V +FG V H D + V++G +
Sbjct: 9 GVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDI 68
Query: 920 IQAAILDVAKAERLVDLSLK 939
++ +++V V LS++
Sbjct: 69 VKVKVMEVDIPRNRVGLSMR 88
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 36.8 bits (85), Expect = 0.002
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 127 TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTI 186
+LK++ GM L GVV V + + GL + + + + E +
Sbjct: 12 SLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAG----- 66
Query: 187 FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
+V V+++D + ++ LS+R+S
Sbjct: 67 ----DIVKVKVMEVDIP-----RNRVGLSMRMS 90
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 74.0 bits (182), Expect = 1e-16
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1523
+ + VG + G++ R+ +G F+ I GL H+S++++ V+ + + G++V VK
Sbjct: 1 AEIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 59
Query: 1524 ILKVDKEKRRISLGMKSS 1541
+L+VD++ RI L +K +
Sbjct: 60 VLEVDRQG-RIRLSIKEA 76
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 66.3 bits (162), Expect = 6e-14
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
++++ G V GKV + FGA V GG + L + +++ + K ++G E+ +V
Sbjct: 1 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 60
Query: 554 LGV-KSKRITVTHKK 567
L V + RI ++ K+
Sbjct: 61 LEVDRQGRIRLSIKE 75
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 54.8 bits (132), Expect = 8e-10
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
+ I V G V I++ G FV G G S+ D + ++ +GQ V +
Sbjct: 1 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 60
Query: 817 LDVNSETGRITLSLKQS 833
L+V+ + GRI LS+K++
Sbjct: 61 LEVDRQ-GRIRLSIKEA 76
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 52.1 bits (125), Expect = 7e-09
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
++ + G V + G F+ + + V +S ++D VE +G+ V +VL
Sbjct: 2 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 61
Query: 1435 SVEPLSKRVEVTLK 1448
V+ R+ +++K
Sbjct: 62 EVDR-QGRIRLSIK 74
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 47.8 bits (114), Expect = 2e-07
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
+ G +T+I G FV G +G S++ + + +GQ V +++ +
Sbjct: 8 VYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL-EVDRQ 66
Query: 648 RRINLS 653
RI LS
Sbjct: 67 GRIRLS 72
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (86), Expect = 0.001
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
VG + ++T I + G G G +HI+++ D + VE + ++GQ V +++
Sbjct: 5 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR---VEKVTDYLQMGQEVPVKVL 61
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 36.3 bits (84), Expect = 0.003
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
I G + G++++I+ G V IG G VH +++ + V GQ
Sbjct: 3 IEVGRVYTGKVTRIVDF--GAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE----- 55
Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
V KVLE+ R R + LS++ +
Sbjct: 56 ------VPVKVLEVDRQGR----IRLSIKEA 76
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.5 bits (167), Expect = 2e-14
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
V D+V+ ++ + G ++++ N+ G+ +SELS + +I + R G V +++
Sbjct: 13 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 72
Query: 1527 VDKEKRRISLGMK 1539
VDKEK I L +
Sbjct: 73 VDKEKGYIDLSKR 85
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.1 bits (122), Expect = 2e-08
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 761 PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
VV V +I E G +V L + G S+ + ++K +G++ ++
Sbjct: 13 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 72
Query: 819 VNSETGRITLSLKQ 832
V+ E G I LS ++
Sbjct: 73 VDKEKGYIDLSKRR 86
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (109), Expect = 1e-06
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ VV V ++ GA V ++ + L +S I K ++G V+
Sbjct: 12 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVI 71
Query: 555 GV--KSKRITVTHKK 567
V + I ++ ++
Sbjct: 72 RVDKEKGYIDLSKRR 86
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (105), Expect = 4e-06
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 588 ITHGWITKIEKHGCFVRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
+ + I + G +V YN ++G SEL + + +G+ ++
Sbjct: 16 VVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDK 75
Query: 646 ASRRINLS 653
I+LS
Sbjct: 76 EKGYIDLS 83
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (102), Expect = 9e-06
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
+V V+++ G ++ L ++ +LLS LS + S K IG+ V+
Sbjct: 13 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 72
Query: 1436 VEPLSKRVEVTLK 1448
V+ ++++ +
Sbjct: 73 VDKEKGYIDLSKR 85
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (99), Expect = 2e-05
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 874 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILD 926
+ V+ V + G VS E++++ G I +L+ + G ++
Sbjct: 13 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 72
Query: 927 VAKAERLVDLSLK 939
V K + +DLS +
Sbjct: 73 VDKEKGYIDLSKR 85
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 67.3 bits (164), Expect = 4e-14
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526
G+I+I +K+V YG +++++ L SE+S V NI + + KV VK+++
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
Query: 1527 VDKEKRRISLGMK 1539
VD+ K + + +K
Sbjct: 71 VDRRKGTVDVSLK 83
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 47.7 bits (113), Expect = 3e-07
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 761 PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
++ V + + G +V G L F P S+ ++ + V ++
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
Query: 819 VNSETGRITLSLKQ 832
V+ G + +SLK+
Sbjct: 71 VDRRKGTVDVSLKK 84
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 46.2 bits (109), Expect = 1e-06
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
G ++ V V +G+ V GG++A P +S + K +++ +V+
Sbjct: 10 SEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVI 69
Query: 555 GV--KSKRITVTHKK 567
V + + V+ KK
Sbjct: 70 RVDRRKGTVDVSLKK 84
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 45.8 bits (108), Expect = 1e-06
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 588 ITHGWITKIEKHGCFVRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
I + ++ +G +V Y G+Q F P SE+ + + V +++
Sbjct: 14 ILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDR 73
Query: 646 ASRRINLS 653
+++S
Sbjct: 74 RKGTVDVS 81
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 43.1 bits (101), Expect = 1e-05
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 874 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 926
G ++ V + D+G VS +E+ + F+ +++ V++ + ++
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
Query: 927 VAKAERLVDLSLK 939
V + + VD+SLK
Sbjct: 71 VDRRKGTVDVSLK 83
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 40.0 bits (93), Expect = 2e-04
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRK--LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
I+ VK V G ++ L L A + S +S +V++ + V +V+
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
Query: 1436 VEPLSKRVEVTLK 1448
V+ V+V+LK
Sbjct: 71 VDRRKGTVDVSLK 83
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Score = 64.1 bits (156), Expect = 5e-13
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----DNIETIYRAGEKVKVK 1523
GD+VIG I+ V F+ I + V + V + D+++++ + G+ +K K
Sbjct: 7 AGDVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAK 65
Query: 1524 ILKVDKEKRRISLGMKS 1540
++ DK R L ++
Sbjct: 66 VVAFDKT-RSPLLTVQG 81
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Score = 48.7 bits (116), Expect = 1e-07
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS----EFEIVKPGKKFKVGAELVFR 552
+ G VV G + +V V A+ + + KVG + +
Sbjct: 6 QAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAK 65
Query: 553 VLGV-KSKRITVTHK 566
V+ K++ +T +
Sbjct: 66 VVAFDKTRSPLLTVQ 80
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Score = 43.0 bits (101), Expect = 2e-05
Identities = 8/78 (10%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES----PEKEFPIGKLVAGRV 1433
+V G +++V F+ ++ A + + + + +G + +V
Sbjct: 7 AGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKV 66
Query: 1434 LSVEPLSKRVEVTLKTSD 1451
++ + ++ +T++
Sbjct: 67 VAFDK-TRSPLLTVQGEG 83
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Score = 39.5 bits (92), Expect = 3e-04
Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS----KAVDGQRADLSKTYYVGQSVRSNI 816
VV G + ++ FV + + D+ VG +++ +
Sbjct: 7 AGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKV 66
Query: 817 LDVNSETGRITLSLKQ 832
+ + +T L+++
Sbjct: 67 VAFD-KTRSPLLTVQG 81
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Score = 39.1 bits (91), Expect = 4e-04
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1318
GD+V G I + V I + + ++ D S
Sbjct: 7 AGDVVIGLIQSVGIM--NWFVDINSPYVAVLSVQDFLG-------RPFNPAVDDMQSLLK 57
Query: 1319 EGQFVKCKVLEISRTVRGTFHVELSLRS 1346
G ++K KV+ +T L+++
Sbjct: 58 VGDYIKAKVVAFDKTRS----PLLTVQG 81
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.1 bits (158), Expect = 6e-13
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 4/108 (3%)
Query: 1455 ASQSEIN---NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNI 1510
+S +N + L G ++ G + +E +G + I + + E N
Sbjct: 5 SSGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNK 64
Query: 1511 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1558
+ G+ + + KV +SL + S Q S +
Sbjct: 65 GAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNN 112
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (132), Expect = 2e-09
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPG 277
+ LS E ++ GM+LT V S+EDHGY++ G+ FLP E +K G
Sbjct: 12 RVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVG 71
Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL 319
L +V + VV LS VS + + + +++ L
Sbjct: 72 QYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNL 113
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 2e-06
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMS-EFEIVKPGKKFKVGA 547
V + +KPGM++ G V +++ G +V G +A PL G K KVG
Sbjct: 13 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQ 72
Query: 548 ELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATD 585
L V V ++++ + V + +A +
Sbjct: 73 YLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNN 112
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 2e-04
Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGY-VESPEKEFPIGKLV 1429
E L P M++ G V ++ G + + A + L + ++ + +G+ +
Sbjct: 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYL 74
Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1464
V V+ V +++ S+ TA +E + +
Sbjct: 75 NCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWN 109
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 6e-04
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSK-AVDGQRADLSKTYYVGQSV 812
A + P ++ G V ++ + G V F P K ++ + VGQ +
Sbjct: 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYL 74
Query: 813 RSNILDVNSETGRITLSLKQSCCSSTDAS 841
+ V G ++LS+ S S+ A+
Sbjct: 75 NCIVEKVKGNGGVVSLSVGHSEVSTAIAT 103
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 7e-04
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 588 ITHGWITKIEKHGCFVRF-YNGVQGFAPRSELGLDP-GCEPSSMYHVGQVVKCRIMSSIP 645
+ G ++ +E HG V +G + F P + + VGQ + C +
Sbjct: 24 LLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKG 83
Query: 646 ASRRINLSFMMKPTRVSE 663
++LS + + VS
Sbjct: 84 NGGVVSLS--VGHSEVST 99
|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Length = 62 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Streptomyces antibioticus [TaxId: 1890]
Score = 62.0 bits (151), Expect = 2e-12
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1474 GQIKRVESYGLFITIENTNLVGLCHVSELSED----HVDNIETIYRAGEKVKVKILKVDK 1529
G + + ++G F+++ GL H+S++ + V+N+E + G+KV+V+I ++D
Sbjct: 1 GSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS 59
Query: 1530 EKR 1532
+
Sbjct: 60 RGK 62
|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Length = 62 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Streptomyces antibioticus [TaxId: 1890]
Score = 47.0 bits (112), Expect = 3e-07
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE----IVKPGKKFKVGAELVFRVLGVKSK 559
G V+ +FGA V G L + + + + VG ++ + + S+
Sbjct: 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSR 60
Query: 560 R 560
Sbjct: 61 G 61
|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Length = 62 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Streptomyces antibioticus [TaxId: 1890]
Score = 45.1 bits (107), Expect = 1e-06
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE----PSSMYHVGQVVKCRIMS 642
G + K G FV G G S++ G + + VGQ V+ I
Sbjct: 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAE 56
|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Length = 62 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Streptomyces antibioticus [TaxId: 1890]
Score = 38.5 bits (90), Expect = 3e-04
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY----VESPEKEFPIGKLVAGRVLSVEPL 1439
G V T+ G F+ L D + +S + VE+ E +G+ V + ++
Sbjct: 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSR 60
Query: 1440 SK 1441
K
Sbjct: 61 GK 62
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 60.0 bits (145), Expect = 1e-11
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET---IYRAGEKVKVKI 1524
+ DIVIG ++ VE YG + I+ S L ++ E G+ V +I
Sbjct: 7 INDIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARI 65
Query: 1525 LKVDKEKRRISLGMKS 1540
D+ L +K
Sbjct: 66 ENFDRSI-DPVLSVKG 80
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 46.9 bits (111), Expect = 6e-07
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV---KPGKKFKVGAELVFRV 553
K +V G V V+ +G +V KA P ++ I + VG ++ R+
Sbjct: 6 KINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARI 65
Query: 554 LGV-KSKRITVTHK 566
+S ++ K
Sbjct: 66 ENFDRSIDPVLSVK 79
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 41.9 bits (98), Expect = 4e-05
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE---SPEKEFPIGKLVAGRVL 1434
N IV G V++V G + + A + SNL + + +G V R+
Sbjct: 7 INDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIE 66
Query: 1435 SVEPLSKRVEVTLKTSD 1451
+ + S +++K D
Sbjct: 67 NFDR-SIDPVLSVKGKD 82
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 40.8 bits (95), Expect = 1e-04
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1318
DIV G + + G VV I + + L ++ D D
Sbjct: 7 INDIVIGLVEDVEIY--GWVVDIKAPYKAYLPASNLLGRSINVG--------EDLRRYLD 56
Query: 1319 EGQFVKCKVLEISRTVRGTFHVELSLRS 1346
G +V ++ R++ LS++
Sbjct: 57 VGDYVIARIENFDRSID----PVLSVKG 80
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 40.0 bits (93), Expect = 2e-04
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPR---SKAVDGQRADLSKTYYVGQSVRSNIL 817
N +V G V ++ G V + P DL + VG V + I
Sbjct: 7 INDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIE 66
Query: 818 DVNSETGRITLSLKQ 832
+ + + LS+K
Sbjct: 67 NFD-RSIDPVLSVKG 80
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 83 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 58.9 bits (142), Expect = 4e-11
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILK 1526
VGD+VIG I+ V + G + I + VSE + G+ + K+L
Sbjct: 5 VGDVVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLN 63
Query: 1527 VDKEKRRISLGMKS 1540
+D + +++L MK
Sbjct: 64 IDPKM-KVTLTMKD 76
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 83 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.8 bits (116), Expect = 1e-07
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLG 555
G VV G + V + G V +A P+ KP + +G ++ +VL
Sbjct: 4 SVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLN 63
Query: 556 V-KSKRITVTHK 566
+ ++T+T K
Sbjct: 64 IDPKMKVTLTMK 75
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 83 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 42.3 bits (99), Expect = 3e-05
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVESPEKEFPIGKLVAGRVLSV 1436
+V G ++ V + G + + A + +S + + P + IG + +VL++
Sbjct: 5 VGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNI 64
Query: 1437 EPLSKRVEVTLKTSDSR 1453
+P +V +T+K R
Sbjct: 65 DP-KMKVTLTMKDRICR 80
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 83 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.5 bits (97), Expect = 4e-05
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDV 819
VV G + + G V F P S+ ++ +G ++ + +L++
Sbjct: 5 VGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNI 64
Query: 820 NSETGRITLSLKQ 832
+ ++TL++K
Sbjct: 65 D-PKMKVTLTMKD 76
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 83 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 38.1 bits (88), Expect = 7e-04
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
G +V ++ + NG + + + + + P + + A++L +
Sbjct: 5 VGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNI 64
Query: 381 DPTSRAVGLTL 391
DP + V LT+
Sbjct: 65 DPKMK-VTLTM 74
|
| >d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 58.1 bits (140), Expect = 1e-10
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE-----------TIYRA 1516
+ +++ G++ V +G F+ + L GL HVS++ +D+V +
Sbjct: 3 MYELIEGEVVDVVEFGSFVRLG--PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEI 60
Query: 1517 GEKVKVKILKVDKEKRR-----ISLGMK 1539
G+ V+ +I+ + + R I+L M+
Sbjct: 61 GDYVRARIVAISLKAERKRGSKIALTMR 88
|
| >d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (135), Expect = 5e-10
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 14/87 (16%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----------DNIETIYRAG 1517
G++V G + +G + + + +D + E +
Sbjct: 3 KGEVVDGTVVSCSQHGFEVQVGPMK--VFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK 60
Query: 1518 EKVKVKILKVDKEKRRISL--GMKSSY 1542
+++VKI + I +K Y
Sbjct: 61 SRIRVKIEGCISQVSSIHAIGSIKEDY 87
|
| >d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (86), Expect = 0.002
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 11/77 (14%)
Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA----------DLSKTYYVGQS 811
VV G V + + G V+ +G + F + +
Sbjct: 4 GEVVDGTVVSCSQHGFEVQ-VGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSR 62
Query: 812 VRSNILDVNSETGRITL 828
+R I S+ I
Sbjct: 63 IRVKIEGCISQVSSIHA 79
|
| >d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exoribonuclease 2, RNB species: Escherichia coli [TaxId: 562]
Score = 55.2 bits (133), Expect = 8e-10
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 12/82 (14%)
Query: 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH------------VDNIETIY 1514
+I + G+ + + + + L ET+Y
Sbjct: 2 GTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVY 61
Query: 1515 RAGEKVKVKILKVDKEKRRISL 1536
+ + + V I +V E R I
Sbjct: 62 KVTDVIDVTIAEVRMETRSIIA 83
|
| >d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exoribonuclease 2, RNB species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (86), Expect = 0.002
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 13/73 (17%)
Query: 591 GWITKIEKHGCFVRF-YNGVQGFAPRSELG------------LDPGCEPSSMYHVGQVVK 637
I I + G VR NG F P L + ++Y V V+
Sbjct: 9 AEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVID 68
Query: 638 CRIMSSIPASRRI 650
I +R I
Sbjct: 69 VTIAEVRMETRSI 81
|
| >d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of Ribosomal RNA-processing protein 4, RRP4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (128), Expect = 4e-09
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS----------EDHVDNIETIYRAG 1517
VGDIV+G+I V+ + N+ L + +S ++ + + + G
Sbjct: 8 VGDIVVGRITEVQQKRWKVET-NSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEG 66
Query: 1518 EKVKVKILKVDKEKRRISLGMKS 1540
+ + ++ V + +SL +S
Sbjct: 67 DLISAEVQAVFSDG-AVSLHTRS 88
|
| >d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (113), Expect = 4e-07
Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 14/84 (16%)
Query: 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV------------DNIETIY 1514
G++V + +V GLF I + + + + + +
Sbjct: 3 FKGEVVDAVVTQVNKVGLFTEIGP--MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 60
Query: 1515 RAGEKVKVKILKVDKEKRRISLGM 1538
+ +++++KI+ +K I
Sbjct: 61 QQDDEIRLKIVGTRVDKNDIFAIG 84
|
| >d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome component 3 (RRP40) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (113), Expect = 4e-07
Identities = 8/79 (10%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1527
GD VIG + + + + + G+ + + +
Sbjct: 6 KGDHVIGIVTAKSGDIFKVDV-GGSEPASLSYLSFEG-ATKRNRPNVQVGDLIYGQFVVA 63
Query: 1528 DKEKRRISLGMKSSYFKND 1546
+K+ + S + +
Sbjct: 64 NKDM-EPEMVCIDSCGRAN 81
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 4e-06
Identities = 29/218 (13%), Positives = 70/218 (32%), Gaps = 7/218 (3%)
Query: 1675 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1734
+ + + + PN + W + ++ A E+A+ ++ + +N+
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT-LDPNFLDAYINLGNVLKEA 216
Query: 1735 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1794
+ AV + + VH L +Y LA + + I+ H
Sbjct: 217 RI-----FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271
Query: 1795 KVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEG 1854
+ LK++ +A H ++ A ++ + G + ++
Sbjct: 272 DAYCNLAN-ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330
Query: 1855 ILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892
L +P+ S + G + ++ AI +
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
|
| >d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome component 3 (RRP40) species: Saccharomyces cerevisiae [TaxId: 4932]
Score = 42.9 bits (101), Expect = 2e-05
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1527
V D VIG I S +++ + + + G+ V ++
Sbjct: 7 VNDFVIGVIIGTFSDSYKVSL-QNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTA 65
Query: 1528 DKEKRRISLGMKSS 1541
+KE + S
Sbjct: 66 EKE-LEAEIECFDS 78
|
| >d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]} Length = 72 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 domain of NusA species: Thermotoga maritima [TaxId: 2336]
Score = 40.4 bits (95), Expect = 9e-05
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1527
G + ++ RV I I E +AG+ VKV I+ V
Sbjct: 8 KGTVTTAEVIRVMGEWADIRIGKLETR--LPKKEWIPGEE------IKAGDLVKVYIIDV 59
Query: 1528 DKEKR 1532
K +
Sbjct: 60 VKTTK 64
|
| >d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exosome component 1, EXOSC1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (86), Expect = 0.004
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 1468 VGDIVIGQIKR-------VESYGLFITIENTNLVGLCHVSEL--SEDHVDNIETIYRAGE 1518
VG IV ++ V + + G ++ +E I +R G+
Sbjct: 7 VGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGD 66
Query: 1519 KVKVKILKVDKEKRRISLGMKS 1540
V K++ + + L
Sbjct: 67 IVLAKVISLGDAQSNYLLTTAE 88
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1935 | |||
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.9 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.82 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.68 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.67 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1sroa_ | 76 | S1 RNA-binding domain of polyribonucleotide phosph | 99.55 | |
| d1sroa_ | 76 | S1 RNA-binding domain of polyribonucleotide phosph | 99.53 | |
| d3bzka4 | 94 | Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287] | 99.49 | |
| d1kl9a2 | 86 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 99.46 | |
| d1wi5a_ | 119 | S1-domain of RRP5 protein homolog (PDCD11, KIAA018 | 99.46 | |
| d3bzka4 | 94 | Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287] | 99.46 | |
| d1kl9a2 | 86 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 99.44 | |
| d2ahob2 | 84 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 99.43 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.4 | |
| d2ahob2 | 84 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 99.4 | |
| d1wi5a_ | 119 | S1-domain of RRP5 protein homolog (PDCD11, KIAA018 | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d2ba0a1 | 83 | S1-domain of exosome complex RNA-binding protein 1 | 99.23 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.22 | |
| d2ba0a1 | 83 | S1-domain of exosome complex RNA-binding protein 1 | 99.21 | |
| d2je6i1 | 87 | S1-domain of exosome complex RNA-binding protein 1 | 99.19 | |
| d1go3e1 | 106 | C-terminal domain of RNA polymerase II subunit RBP | 99.18 | |
| d2z0sa1 | 88 | S1-domain of exosome complex RNA-binding protein 1 | 99.17 | |
| d2je6i1 | 87 | S1-domain of exosome complex RNA-binding protein 1 | 99.11 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d2z0sa1 | 88 | S1-domain of exosome complex RNA-binding protein 1 | 99.08 | |
| d1go3e1 | 106 | C-terminal domain of RNA polymerase II subunit RBP | 99.08 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.05 | |
| d1e3pa2 | 62 | S1 RNA-binding domain of polyribonucleotide phosph | 99.01 | |
| d1e3pa2 | 62 | S1 RNA-binding domain of polyribonucleotide phosph | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.83 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.82 | |
| d2nn6h1 | 95 | S1-domain of Ribosomal RNA-processing protein 4, R | 98.82 | |
| d2ix0a3 | 87 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 98.79 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.71 | |
| d2nn6h1 | 95 | S1-domain of Ribosomal RNA-processing protein 4, R | 98.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.66 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.65 | |
| d1y14b1 | 91 | C-terminal domain of RNA polymerase II subunit RBP | 98.63 | |
| d2ix0a3 | 87 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 98.6 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.58 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.58 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.55 | |
| d2c35b1 | 94 | C-terminal domain of RNA polymerase II subunit RBP | 98.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.48 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.45 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.43 | |
| d1y14b1 | 91 | C-terminal domain of RNA polymerase II subunit RBP | 98.37 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.33 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.27 | |
| d2c35b1 | 94 | C-terminal domain of RNA polymerase II subunit RBP | 98.25 | |
| d2nn6g1 | 88 | S1-domain of exosome component 3 (RRP40) {Human (H | 98.22 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.2 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.16 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.14 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.12 | |
| d2nn6g1 | 88 | S1-domain of exosome component 3 (RRP40) {Human (H | 98.11 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.99 | |
| d2ja9a1 | 90 | S1-domain of exosome component 3 (RRP40) {Saccharo | 97.94 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.92 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d2ja9a1 | 90 | S1-domain of exosome component 3 (RRP40) {Saccharo | 97.89 | |
| d1hh2p1 | 72 | S1 domain of NusA {Thermotoga maritima [TaxId: 233 | 97.89 | |
| d1hh2p1 | 72 | S1 domain of NusA {Thermotoga maritima [TaxId: 233 | 97.82 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.69 | |
| d2nn6i1 | 125 | Exosome component 1, EXOSC1 {Human (Homo sapiens) | 97.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.47 | |
| d2nn6i1 | 125 | Exosome component 1, EXOSC1 {Human (Homo sapiens) | 97.46 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.46 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.46 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.45 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.42 | |
| d2asba1 | 76 | S1 domain of NusA {Mycobacterium tuberculosis [Tax | 97.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.31 | |
| d2asba1 | 76 | S1 domain of NusA {Mycobacterium tuberculosis [Tax | 97.23 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.04 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.0 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.93 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.22 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.71 | |
| d1smxa_ | 87 | S1-domain of Ribonuclease E {Escherichia coli [Tax | 95.59 | |
| d1smxa_ | 87 | S1-domain of Ribonuclease E {Escherichia coli [Tax | 95.54 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.93 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.58 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 87.8 | |
| d1jjga_ | 102 | Viral structural mimic of eIF2alpha {Myxoma virus, | 86.06 | |
| d1k3ra1 | 71 | Hypothetical protein MTH1 (MT0001), insert domain | 83.42 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 80.67 |
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=1.8e-22 Score=241.98 Aligned_cols=240 Identities=15% Similarity=0.237 Sum_probs=209.2
Q ss_pred CHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCC------------CHH
Q 000173 1685 SSFVWIKYMAFMLSMA--------DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP------------PEE 1744 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~--------e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~------------~~e 1744 (1935)
...+|+.|+.|+...+ ..++++.+|+||+..+|... .+|+.|+.++...++. ..+
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~-----~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (308)
T d2onda1 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 81 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHcCchHHHHHHHhhcccchH
Confidence 4579999999987654 25678889999999988755 4999999987543310 237
Q ss_pred HHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1745 AVVKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-CKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~--~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~-~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
.|+.+|+||++..++ ..+|..++.++...++++.|+.+|+++++..+.. ..+|..|+.++.+. +++.|+++|++|+
T Consensus 82 ~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al 161 (308)
T d2onda1 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 899999999986443 4899999999999999999999999999988754 66899999999999 9999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchh
Q 000173 1821 LSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS-LPPKK 1898 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~-~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~-~~pk~ 1898 (1935)
+.+|... .+|..+|.++.. .|+.+.|+.+|++++..+|.+.++|..|++++.+.|+.++||.+|++|+... .+|..
T Consensus 162 ~~~~~~~--~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 162 EDARTRH--HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp TSTTCCT--HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HhCCCcH--HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 9999885 789999998875 6899999999999999999999999999999999999999999999999843 45555
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1899 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1899 ~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
...+|..|+.||..+|+.+.++.+++||.+...
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 557999999999999999999999999988764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=1.4e-19 Score=216.59 Aligned_cols=213 Identities=16% Similarity=0.201 Sum_probs=192.8
Q ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Q 000173 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLSMA--------------DVEKARSIAERALQTINIREENEKLNIWVAYFNLEN 1736 (1935)
Q Consensus 1671 a~~~ferll~~~P~s~~lW~~y~~~~l~~~--------------e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~ 1736 (1935)
....|+|+|...|.++.+|+.|+.|+.+.+ .+++|+.+|+||++..++.. ..+|..|+.++.
T Consensus 35 v~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~----~~l~~~ya~~~~ 110 (308)
T d2onda1 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----MLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHH
Confidence 345799999999999999999999986543 35899999999998755543 369999999999
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CHHHH
Q 000173 1737 EYGNPPEEAVVKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQEGV 1812 (1935)
Q Consensus 1737 ~~g~~~~e~a~~vferAl~~~~~--~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~--~~e~A 1812 (1935)
..| ..+.|+.+|+++++..|. ..+|..++.++.+.+.++.|+++|+++++.++.+..+|..++.+.... +.+.|
T Consensus 111 ~~~--~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 111 SRM--KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTT--CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcc--cHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHH
Confidence 999 569999999999998875 479999999999999999999999999999999999999999887765 89999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1813 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK----RTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1813 ~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk----~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
+.+|+++++.+|.+ +.+|..|++++...|+.++||.+|+++++..|. ...+|..|+.+|..+|+.+.++.+++|
T Consensus 189 ~~i~e~~l~~~p~~--~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 189 FKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999888 699999999999999999999999999998774 456999999999999999999999999
Q ss_pred HHh
Q 000173 1889 AIS 1891 (1935)
Q Consensus 1889 al~ 1891 (1935)
+..
T Consensus 267 ~~~ 269 (308)
T d2onda1 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=3.3e-15 Score=181.02 Aligned_cols=257 Identities=11% Similarity=0.043 Sum_probs=226.7
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhh----------------------
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE---------------------- 1723 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~E---------------------- 1723 (1935)
++..+|...|++++..+|++...|..++..+...|++++|...+.++++..+......
T Consensus 47 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (388)
T d1w3ba_ 47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4567888999999999999999999999999999999999999999887544321100
Q ss_pred -----------------------------------------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000173 1724 -----------------------------------------KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1761 (1935)
Q Consensus 1724 -----------------------------------------kl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1761 (1935)
....|..+..+....+ ..+.|...++++++..|.. .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~p~~~~ 204 (388)
T d1w3ba_ 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG--EIWLAIHHFEKAVTLDPNFLD 204 (388)
T ss_dssp HHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHCTTCHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccC--cHHHHHHHHHHHHHhCcccHH
Confidence 0134444555556667 4589999999999998875 8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1840 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~ 1840 (1935)
.|..++.+|...+++++|...|+++....+.....|..++..+.+. ++++|...|+++++..|.. ..+|..+|.++.
T Consensus 205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC--HHHHHHHHHHHH
T ss_pred HHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9999999999999999877 589999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000173 1841 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1920 (1935)
Q Consensus 1841 ~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~ 1920 (1935)
..|++++|...|+.++...|.+...|..++.++...|++++|...|++++. ..|+.. ..|..+.......|+.+.|.
T Consensus 283 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~-~~~~~la~~~~~~g~~~~A~ 359 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFA-AAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCH-HHHHHHHHHHHTTTCCHHHH
T ss_pred HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999998 778877 57888888888999999999
Q ss_pred HHHHHHHHH
Q 000173 1921 YVKQKAMEY 1929 (1935)
Q Consensus 1921 ~v~~rAle~ 1929 (1935)
..|++|++.
T Consensus 360 ~~~~~al~l 368 (388)
T d1w3ba_ 360 MHYKEAIRI 368 (388)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999999863
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=6.5e-15 Score=178.40 Aligned_cols=251 Identities=15% Similarity=0.153 Sum_probs=222.6
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
++..+|...|++++..+|++..+|..++..+.+.+++++|...|++|++..|.. ...|..++.++...| ..++
T Consensus 13 G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~l~~~~~~~g--~~~~ 85 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-----AEAYSNLGNVYKERG--QLQE 85 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHT--CHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHhhhhc--cccc
Confidence 456678889999999999999999999999999999999999999999876532 358999999999999 5599
Q ss_pred HHHHHHHHHhcCCC------------------------------------------------------------------
Q 000173 1746 VVKVFQRALQYCDP------------------------------------------------------------------ 1759 (1935)
Q Consensus 1746 a~~vferAl~~~~~------------------------------------------------------------------ 1759 (1935)
|...|+++++..+.
T Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC
Confidence 99999998876642
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 000173 1760 ---KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT 1835 (1935)
Q Consensus 1760 ---~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~ 1835 (1935)
...|..++.++...+++++|...+++++...|....+|..++..+... ++++|...|++++...|.. ...|..+
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l 243 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH--AVVHGNL 243 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH--HHHHHHH
Confidence 134555566778889999999999999999999999999999999999 9999999999999998776 5889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000173 1836 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1915 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~ 1915 (1935)
|..+++.|++++|...|+++++..|++.++|..++.++...|+.++|...|++++. ..|... ..|..+.......|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHA-DSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHTTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccc-hhhhHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999998 666666 577777788888999
Q ss_pred HHHHHHHHHHHHH
Q 000173 1916 EERIEYVKQKAME 1928 (1935)
Q Consensus 1916 ~e~a~~v~~rAle 1928 (1935)
.+.|...|++|++
T Consensus 321 ~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 321 IEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=5.4e-15 Score=176.45 Aligned_cols=260 Identities=12% Similarity=0.036 Sum_probs=216.1
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++.++|...|++++..+|++..+|..++..+...+++++|...|++|++..|.. ...|..++.++...+ ..+
T Consensus 32 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~--~~~ 104 (323)
T d1fcha_ 32 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN-----QTALMALAVSFTNES--LQR 104 (323)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc-----ccccccccccccccc--ccc
Confidence 4668889999999999999999999999999999999999999999999765532 368999999999999 559
Q ss_pred HHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHH
Q 000173 1745 AVVKVFQRALQYCDPK----------------KVHLALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLK 1806 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~----------------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~--~~~vw~~~~~~l~~ 1806 (1935)
.|.+.|++++...|.. ..+...+..+...+.+.+|.+.|.++++..|. ...+|..++..+..
T Consensus 105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 184 (323)
T d1fcha_ 105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 184 (323)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 9999999999988652 11112223445667788999999999998864 57889999999999
Q ss_pred c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1807 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1885 (1935)
Q Consensus 1807 ~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~l 1885 (1935)
. ++++|...|++++...|.. ..+|..+|.+++..|++++|...|+++++..|.+.++|..++.++.+.|++++|+..
T Consensus 185 ~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 262 (323)
T d1fcha_ 185 SGEYDKAVDCFTAALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262 (323)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhhhhccccccccccccc--ccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9 9999999999999999887 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhC
Q 000173 1886 FERAISLSLPPKKMK----------FLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1935 (1935)
Q Consensus 1886 feral~~~~~pk~~k----------~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~~ 1935 (1935)
|++|++ +.|+... .+|..+-......|..+.+..+..|.++.+...||
T Consensus 263 ~~~al~--l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~~l~~l~~~~~ 320 (323)
T d1fcha_ 263 FLEALN--MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 320 (323)
T ss_dssp HHHHHH--HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred HHHHHH--hCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCHHHHHHHhC
Confidence 999998 4444331 24544444444567777777777787777766553
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.1e-14 Score=173.87 Aligned_cols=237 Identities=16% Similarity=0.082 Sum_probs=205.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVH 1763 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~ 1763 (1935)
+...|...+..+++.|++++|...|+++++..|.. ...|..++.++...| ..+.|...|++|++..|.. ..|
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~ 90 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-----MEAWQYLGTTQAENE--QELLAISALRRCLELKPDNQTAL 90 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--ChHHHHHHHHhhhcccccccccc
Confidence 44557788889999999999999999999765532 458999999999999 5599999999999999875 999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHH---------------HHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVW---------------LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw---------------~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
..++.+|...+++++|.+.|++++...+.....+ ......+... .+.+|...|.++++..|...
T Consensus 91 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~ 170 (323)
T d1fcha_ 91 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 170 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred ccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999998876433221 1122223334 78889999999999999887
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
...+|..+|.++...|++++|...|++++...|.+..+|..++.++...|++++|...|++++. +.|... ..|..+.
T Consensus 171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~-~a~~~lg 247 (323)
T d1fcha_ 171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYI-RSRYNLG 247 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHH
T ss_pred ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH--HhhccH-HHHHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999999999 777777 5777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1908 EYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1908 ~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
......|+.++|...|++|+++-.
T Consensus 248 ~~~~~~g~~~~A~~~~~~al~l~p 271 (323)
T d1fcha_ 248 ISCINLGAHREAVEHFLEALNMQR 271 (323)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC
Confidence 888889999999999999998644
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=2e-15 Score=138.55 Aligned_cols=76 Identities=30% Similarity=0.680 Sum_probs=71.7
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
+++++|+++.|+|+++.+||+||+|.+ +++||||+||++|.+++++.+.|++||.|+|+|+++|+ ++||.||+|++
T Consensus 1 ad~kvG~iv~G~V~~v~~~G~fV~l~~-~~~Glv~~sels~~~~~~~~~~~~~G~~v~v~Vi~id~-~~ri~LS~k~a 76 (76)
T d1sroa_ 1 AEIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 76 (76)
T ss_dssp CCCCTTSEEEEEEEEEETTEEEEECSS-SCCCBCCTTSSCSSCCSCHHHHCCTTCEEEEEEEECCT-TCCCEEEECCC
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEeCC-CCEEEEEhHHhCccccCCHHHccCCCCEEEEEEEEECC-CCCEEEEEEcC
Confidence 478999999999999999999999976 89999999999999999999999999999999999995 57999999974
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=4.3e-15 Score=136.38 Aligned_cols=76 Identities=30% Similarity=0.480 Sum_probs=72.1
Q ss_pred cccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000173 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1935)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~ 833 (1935)
+++++|+.+.|+|++++++|+||+|.+++.||+|.++++|.++.+|++.|++||.|+|+|+++|+ ++|+.||+|++
T Consensus 1 ad~kvG~iv~G~V~~v~~~G~fV~l~~~~~Glv~~sels~~~~~~~~~~~~~G~~v~v~Vi~id~-~~ri~LS~k~a 76 (76)
T d1sroa_ 1 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 76 (76)
T ss_dssp CCCCTTSEEEEEEEEEETTEEEEECSSSCCCBCCTTSSCSSCCSCHHHHCCTTCEEEEEEEECCT-TCCCEEEECCC
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEeCCCCEEEEEhHHhCccccCCHHHccCCCCEEEEEEEEECC-CCCEEEEEEcC
Confidence 36889999999999999999999999999999999999999999999999999999999999996 57999999974
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.49 E-value=2.3e-14 Score=137.32 Aligned_cols=81 Identities=22% Similarity=0.325 Sum_probs=77.6
Q ss_pred ccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000173 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1935)
Q Consensus 754 ~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~ 833 (1935)
.+++++++|++++|+|++++++||||+|.+++.||+|.+++++.+..+|++.|++||.|+|+|+++|++++|+.||+|+.
T Consensus 11 e~~~~~k~G~iv~g~V~~v~~~G~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~vGq~v~~~V~~id~~~~~i~LS~K~~ 90 (94)
T d3bzka4 11 ESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMS 90 (94)
T ss_dssp CCGGGCCTTCEEEEEEEEEETTEEEEECSSSSCEEEEGGGGCSSCCSCHHHHCCTTCEEEEEEEEEETTTTEEEEESCTT
T ss_pred hHHhcCCCCCEEEEEEEEEECcEEEEEeCCCceEEeehhhhhcccccChhhhhccCcEEEEEEEEEECCCCEEEEEEecc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred c
Q 000173 834 C 834 (1935)
Q Consensus 834 ~ 834 (1935)
.
T Consensus 91 e 91 (94)
T d3bzka4 91 D 91 (94)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=5.6e-14 Score=132.42 Aligned_cols=74 Identities=28% Similarity=0.534 Sum_probs=58.7
Q ss_pred CCCcEEEeEEEEEeeceEEEEEec-CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~-~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
++|++|.|+|+++.+||+||+|.. .+++||||+||++|.++.++.+.|++||.|+|+|+++|++++||.||+|+
T Consensus 12 ~~G~iv~G~V~~i~~~G~fV~l~~~~~i~G~i~~sels~~~~~~~~~~~~~Gd~v~~kV~~vd~~~~ki~LS~Kq 86 (86)
T d1kl9a2 12 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRR 86 (86)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred CCCCEEEEEEEEEeCCeEEEEEecCCCEEEEEEeeeccccccccceEEeecccEEEEEEEEEECCCCEEEEEeeC
Confidence 689999999999999999999974 27999999999999999999999999999999999999999999999985
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=3.5e-14 Score=142.06 Aligned_cols=104 Identities=31% Similarity=0.461 Sum_probs=94.1
Q ss_pred chhhhhcCCCcccccCCcEEEEEEEeeecceEEEEecCCcceecccCCCCCC-----CCCCcCCCCcEEEEEEEEEcCCC
Q 000173 217 RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTR 291 (1935)
Q Consensus 217 ~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~-----~~~~~l~~G~~~~~~v~~~~~~~ 291 (1935)
.|+.+|++|+.++|.+||++.|+|++|+||||+|+||++++.||||.+++.. .....|++||.+.|.|+++++.+
T Consensus 6 ~~~~vn~~ls~~~l~~G~iv~G~V~~i~~~G~~V~lg~~~~~G~l~~~els~~~~~~~~~~~~~vGq~v~~~V~~vd~~~ 85 (119)
T d1wi5a_ 6 SGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNG 85 (119)
T ss_dssp CCSCSSCCCCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTS
T ss_pred cHHHHhhhcCHhhcCCCCEEEEEEEEEeccEEEEEEeccccceEEeHHHhccccccCCHHHhcccceEEEEEEEEEeCCC
Confidence 6899999999999999999999999999999999999999999999998752 11237999999999999999999
Q ss_pred cEEEEccCccccccccccccccccccccC
Q 000173 292 KVVYLSSDPDTVSKCVTKDLKGISIDLLV 320 (1935)
Q Consensus 292 ~~v~ls~~~~~~~~~~~~~~~~~s~~~l~ 320 (1935)
|.|.||+.+..+.++..+..+.+++++|.
T Consensus 86 ~~i~LS~k~~~~~~~~~~~~~~~~~~~l~ 114 (119)
T d1wi5a_ 86 GVVSLSVGHSEVSTAIATEQQSWNLNNLS 114 (119)
T ss_dssp CEEEEECCCCCSCCCCCCSSCCCCCCCCC
T ss_pred CEEEEEecHHHhhhhhhhhhhccCccccc
Confidence 99999999999998888888888888763
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.46 E-value=5.8e-14 Score=134.48 Aligned_cols=82 Identities=33% Similarity=0.574 Sum_probs=78.5
Q ss_pred hhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1370 ~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
++.++++++|+++.|+|+++.++||||+|+.+++|++|+++++|.++.+|.+.|++||.|+|+|+++|+++++|.||+|+
T Consensus 10 ie~~~~~k~G~iv~g~V~~v~~~G~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~vGq~v~~~V~~id~~~~~i~LS~K~ 89 (94)
T d3bzka4 10 VESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRM 89 (94)
T ss_dssp CCCGGGCCTTCEEEEEEEEEETTEEEEECSSSSCEEEEGGGGCSSCCSCHHHHCCTTCEEEEEEEEEETTTTEEEEESCT
T ss_pred hhHHhcCCCCCEEEEEEEEEECcEEEEEeCCCceEEeehhhhhcccccChhhhhccCcEEEEEEEEEECCCCEEEEEEec
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 000173 1450 SD 1451 (1935)
Q Consensus 1450 ~~ 1451 (1935)
++
T Consensus 90 ~e 91 (94)
T d3bzka4 90 SD 91 (94)
T ss_dssp TC
T ss_pred cC
Confidence 63
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.2e-13 Score=130.13 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=58.5
Q ss_pred CCCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~--~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~ 832 (1935)
++|+++.|+|.+++++|+||+|. +|+.||+|.++++|.+..+|.+.|++||.|+|+|+++|++++|+.||+|+
T Consensus 12 ~~G~iv~G~V~~i~~~G~fV~l~~~~~i~G~i~~sels~~~~~~~~~~~~~Gd~v~~kV~~vd~~~~ki~LS~Kq 86 (86)
T d1kl9a2 12 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRR 86 (86)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred CCCCEEEEEEEEEeCCeEEEEEecCCCEEEEEEeeeccccccccceEEeecccEEEEEEEEEECCCCEEEEEeeC
Confidence 47999999999999999999997 68999999999999999999999999999999999999999999999985
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.43 E-value=6.5e-14 Score=131.52 Aligned_cols=75 Identities=29% Similarity=0.550 Sum_probs=66.0
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEec-CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~-~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
.++|+++.|+|+++.+||+||+|.. .+++||||.||+++.++.++.+.|++||.|+|+|+++|++++||.||+|+
T Consensus 9 p~~G~iv~G~V~~v~~~G~fV~l~~~~gi~Gli~~sels~~~~~~~~~~~~~G~~v~~kV~~vd~~~~~i~LS~Kq 84 (84)
T d2ahob2 9 PSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (84)
T ss_dssp CCTTCCCEEEEEEEETTEEEEEETTTTTEEEEECGGGCC-----CHHHHTCSSCEEECEEEEEETTTTEEEEESSS
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcCCEEEEEEccccccccccccceEeecccEEEEEEEEEECCCCEEEEEEcC
Confidence 3589999999999999999999974 37999999999999999999999999999999999999999999999985
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=7.4e-12 Score=148.94 Aligned_cols=201 Identities=11% Similarity=0.065 Sum_probs=120.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1760 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1760 (1935)
+|+...++..+...+.+.+.+++|..++++|++..|. . ..+|.....+....+. +.++|...|++|++.+|..
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~----~~a~~~r~~~l~~l~~-~~~eal~~~~~al~~~p~~~ 112 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-N----YTVWHFRRVLLKSLQK-DLHEEMNYITAIIEEQPKNY 112 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-C----HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-C----hHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555555666666666666666654332 1 3456655555555542 2466666666666666553
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
.+|..++.++.+.+++++|.+.|.++++..|.+..+|..++..+... ++++|.+.|+++++..|.+ ..+|...+.++
T Consensus 113 ~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n--~~a~~~r~~~l 190 (315)
T d2h6fa1 113 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQRYFVI 190 (315)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred hHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc--HHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666 6666666666666666655 35666666655
Q ss_pred HHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1840 FKNGV------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1840 ~~~g~------~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
...+. .++|...|.+++..+|.+..+|+....++. ....+++...+++++.
T Consensus 191 ~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 191 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHH
T ss_pred HHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHH
Confidence 55443 456666666666666666666665554433 3334556666666655
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.40 E-value=1.6e-13 Score=128.91 Aligned_cols=73 Identities=19% Similarity=0.353 Sum_probs=65.3
Q ss_pred CCCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~--~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~ 832 (1935)
++|+++.|+|++++++|+||+|. +|+.||+|.+++++.+..+|.+.|++||+|+|+|+++|++++|+.||+|+
T Consensus 10 ~~G~iv~G~V~~v~~~G~fV~l~~~~gi~Gli~~sels~~~~~~~~~~~~~G~~v~~kV~~vd~~~~~i~LS~Kq 84 (84)
T d2ahob2 10 SEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (84)
T ss_dssp CTTCCCEEEEEEEETTEEEEEETTTTTEEEEECGGGCC-----CHHHHTCSSCEEECEEEEEETTTTEEEEESSS
T ss_pred CCCCEEEEEEEEEECCEEEEEECCcCCEEEEEEccccccccccccceEeecccEEEEEEEEEECCCCEEEEEEcC
Confidence 47999999999999999999997 58999999999999999999999999999999999999999999999985
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=2e-12 Score=129.19 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=75.4
Q ss_pred cccccCCCCEEEEEEEEEecCeEEEEE-CCCeEEEeeCCccCccc-ccCcccCccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000173 755 DASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1935)
Q Consensus 755 ~~~~~~~G~~~~G~V~~i~~~G~fV~f-~~gl~Glv~~s~ls~~~-~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~ 832 (1935)
+++++++|++++|+|.+|+++|+||+| ++++.||+|++++++.+ ..+|.+.|++||.|.|+|+++|++++|+.||+|+
T Consensus 15 s~~~l~~G~iv~G~V~~i~~~G~~V~lg~~~~~G~l~~~els~~~~~~~~~~~~~vGq~v~~~V~~vd~~~~~i~LS~k~ 94 (119)
T d1wi5a_ 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGH 94 (119)
T ss_dssp CTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCC
T ss_pred CHhhcCCCCEEEEEEEEEeccEEEEEEeccccceEEeHHHhccccccCCHHHhcccceEEEEEEEEEeCCCCEEEEEecH
Confidence 467899999999999999999999999 58999999999999864 7789999999999999999999999999999998
Q ss_pred ccc
Q 000173 833 SCC 835 (1935)
Q Consensus 833 ~~~ 835 (1935)
...
T Consensus 95 ~~~ 97 (119)
T d1wi5a_ 95 SEV 97 (119)
T ss_dssp CCS
T ss_pred HHh
Confidence 865
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.6e-10 Score=135.30 Aligned_cols=230 Identities=9% Similarity=0.039 Sum_probs=184.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~-e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
+..++|...|++++..+|++..+|...+..+...+ ++++|...++++++..|.. ..+|.....+...+|++ +
T Consensus 57 e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~-----~~a~~~~~~~~~~l~~~--~ 129 (315)
T d2h6fa1 57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-----YQVWHHRRVLVEWLRDP--S 129 (315)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCC--T
T ss_pred CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh-----hhHHHHHhHHHHhhccH--H
Confidence 44778889999999999999999999999988876 5999999999999765532 46999999999999966 9
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CHHHHHHHH
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-------QQEGVQAVV 1816 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-------~~e~A~~ll 1816 (1935)
+|.+.|++|++..|.. ..|..++.++...+++++|.+.|+++++..|.+...|..++..+... .+++|.+.+
T Consensus 130 eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~ 209 (315)
T d2h6fa1 130 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT 209 (315)
T ss_dssp THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHH
Confidence 9999999999999875 99999999999999999999999999999999999999999877664 378999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH--cCC-------HHHHHHH
Q 000173 1817 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR--TDLWSIYLDQEIR--LGD-------VDLIRGL 1885 (1935)
Q Consensus 1817 ~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~--~dlw~~ya~~e~k--~g~-------~e~ar~l 1885 (1935)
.+|++..|.+ ..+|...+.++. ....+++...++.++...|.. ..+....++.+.. .+. +++|..+
T Consensus 210 ~~al~~~P~~--~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l 286 (315)
T d2h6fa1 210 LEMIKLVPHN--ESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 286 (315)
T ss_dssp HHHHHHSTTC--HHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHhCCCc--hHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999988 488888877754 445688999999999988864 3344444444432 233 3344455
Q ss_pred HHHHHhcCCCchhHHHHHHHHH
Q 000173 1886 FERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1886 feral~~~~~pk~~k~l~~~yl 1907 (1935)
++.... ...|-+. ..|.-+.
T Consensus 287 ~~~l~~-~~DpiR~-~yw~~~~ 306 (315)
T d2h6fa1 287 CEILAK-EKDTIRK-EYWRYIG 306 (315)
T ss_dssp HHHHHH-TTCGGGH-HHHHHHH
T ss_pred HHHHHH-hcCHHHH-HHHHHHH
Confidence 554333 3555554 4675444
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.23 E-value=1.2e-11 Score=115.58 Aligned_cols=75 Identities=19% Similarity=0.389 Sum_probs=68.9
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcc-cccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~-~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
++|+++.|+|++++++|+||++++++.||+|.+++++. ...++.+.|++||.|.|+|+++|+ ++|+.||+|...+
T Consensus 4 k~Gd~V~G~V~~v~~~g~~V~i~~~~~g~l~~se~s~~~~~~~~~~~~~vGd~V~~kV~~vd~-~~~i~LS~k~~~~ 79 (83)
T d2ba0a1 4 SVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDRIC 79 (83)
T ss_dssp CTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCSSSC
T ss_pred CCCCEEEEEEEEEECCEEEEecCCCeeEEEecccccccccccChhhhcccccEEEEEEEEECC-CCCEEEEecCCCC
Confidence 57999999999999999999999999999999999975 467899999999999999999995 5799999997653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.7e-10 Score=131.93 Aligned_cols=217 Identities=14% Similarity=-0.014 Sum_probs=162.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1761 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1761 (1935)
|+.+.+|...+..+.+.|++++|+..|++|++..|. . ..+|..++..+...| ..+.|...|++|++..|.. .
T Consensus 34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~----~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~ 106 (259)
T d1xnfa_ 34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-M----PEVFNYLGIYLTQAG--NFDAAYEAFDSVLELDPTYNY 106 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-C----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-C----HHHHhhhchHHHHHH--HHHHhhhhhhHHHHHHhhhhh
Confidence 345678999999999999999999999999976543 2 468999999999999 4599999999999999875 8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1840 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~ 1840 (1935)
.|..++.+|...|++++|.+.|+++++..|.....+..++...... ..+.+..+........+......+...+.....
T Consensus 107 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (259)
T d1xnfa_ 107 AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 186 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999998888776666555544 333444444444444333322111111111011
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1841 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1841 ~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
..+..+.+...+...+...|...++|..++..+...|+++.|...|++|+. ..|... ++.++..+|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~--~~~~~a~~~ 252 (259)
T d1xnfa_ 187 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNF--VEHRYALLE 252 (259)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCH--HHHHHHHHH
Confidence 223356666666666677777788999999999999999999999999998 666553 555665444
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.21 E-value=1.7e-11 Score=114.45 Aligned_cols=76 Identities=22% Similarity=0.367 Sum_probs=70.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc-ccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~-~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
++|++|.|+|++++++|+||+++.+++|++|+++++|. +..+|.+.|++||.|.|+|+++|+ +++|.||+|.....
T Consensus 4 k~Gd~V~G~V~~v~~~g~~V~i~~~~~g~l~~se~s~~~~~~~~~~~~~vGd~V~~kV~~vd~-~~~i~LS~k~~~~~ 80 (83)
T d2ba0a1 4 SVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDRICR 80 (83)
T ss_dssp CTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCSSSCE
T ss_pred CCCCEEEEEEEEEECCEEEEecCCCeeEEEecccccccccccChhhhcccccEEEEEEEEECC-CCCEEEEecCCCCC
Confidence 68999999999999999999999999999999999986 478999999999999999999995 68999999986543
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.19 E-value=1.3e-11 Score=116.30 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=68.9
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc---CcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD---NIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~---~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..++|++|.|+|+++.+||+||+|.+ +++||||+|++++.++. ++.+.|++||.|.|+|+++|+ .++|.||+|..
T Consensus 4 ~Pk~Gdiv~G~V~~i~~~g~fV~i~~-~~~gll~~s~~~~~~~~~~~~~~~~~~~Gd~v~~kV~~vd~-~~~i~LS~k~~ 81 (87)
T d2je6i1 4 YPKINDIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKGK 81 (87)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCST
T ss_pred cCCCCCEEEEEEEEEECCEEEEEeCC-CEEEEEehHHhCCceeccccccchhhcccceEEEEEEEECC-CCCEEEEEecC
Confidence 35789999999999999999999975 89999999999998664 577899999999999999995 58999999986
Q ss_pred cc
Q 000173 1542 YF 1543 (1935)
Q Consensus 1542 ~~ 1543 (1935)
.+
T Consensus 82 ~l 83 (87)
T d2je6i1 82 DL 83 (87)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.18 E-value=1.9e-11 Score=119.17 Aligned_cols=75 Identities=27% Similarity=0.563 Sum_probs=65.2
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCCCe--
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEKRR-- 1533 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~-----------~~~~~~~~~Gd~V~~~Il~id~~~~r-- 1533 (1935)
++|+++.|+|++|.+||+||+|+ +++||||+|+|+++++ .++.+.|++||.|+++|++||.+++|
T Consensus 2 ~~gei~~g~V~~v~~~G~FVel~--~ieGlv~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkV~~vd~~~~~~~ 79 (106)
T d1go3e1 2 EMYELIEGEVVDVVEFGSFVRLG--PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKR 79 (106)
T ss_dssp CTTCEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC----
T ss_pred CCCCEEEEEEEEEeeeEEEEEee--CeEEEEEeecccCceeeeccceeEEeecccccceeecceEEEEEEEEchhhcccc
Confidence 68999999999999999999995 5999999999999876 36778999999999999999999887
Q ss_pred ---eEEecccccc
Q 000173 1534 ---ISLGMKSSYF 1543 (1935)
Q Consensus 1534 ---i~lslK~~~~ 1543 (1935)
|.||+|+.+.
T Consensus 80 ~~~i~ls~K~~~~ 92 (106)
T d1go3e1 80 GSKIALTMRQPYL 92 (106)
T ss_dssp -CEEEEECCSTTC
T ss_pred CceeecccccCCC
Confidence 6778887544
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Probab=99.17 E-value=1.4e-11 Score=116.41 Aligned_cols=76 Identities=24% Similarity=0.457 Sum_probs=68.5
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc----CcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----NIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~----~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.++||+|.|+|+++++||+||+|.+ ++.|++|.||+++.++. ++.+.|++||.|+|+|+++|+ .++|.||+|+.
T Consensus 5 Pk~GdvV~G~V~~v~~~g~fV~i~~-~~~g~l~~se~~~~~~~~~~~~~~~~~~vGd~V~~kV~~vd~-~~~i~Ls~k~~ 82 (88)
T d2z0sa1 5 PQAGDVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQGE 82 (88)
T ss_dssp CCTTCCEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECCSS
T ss_pred CCCCCEEEEEEEEEECCeEEEEeCC-CeEEEEehHHhCcccccccccchhhhcccCcEEEEEEEEECC-CCCEEEEEecC
Confidence 5799999999999999999999975 89999999999988764 678899999999999999995 57999999986
Q ss_pred cc
Q 000173 1542 YF 1543 (1935)
Q Consensus 1542 ~~ 1543 (1935)
.+
T Consensus 83 ~~ 84 (88)
T d2z0sa1 83 GL 84 (88)
T ss_dssp SC
T ss_pred CC
Confidence 44
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.11 E-value=5.2e-11 Score=112.05 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=68.8
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC---CccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE---SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~---~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
-++|++|.|+|++++++|+||+|+.+++|++|+++++|.++. +|.+.|++||.|.|+|+++|+ ++++.||+|...
T Consensus 5 Pk~Gdiv~G~V~~i~~~g~fV~i~~~~~gll~~s~~~~~~~~~~~~~~~~~~~Gd~v~~kV~~vd~-~~~i~LS~k~~~ 82 (87)
T d2je6i1 5 PKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKGKD 82 (87)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCSTT
T ss_pred CCCCCEEEEEEEEEECCEEEEEeCCCEEEEEehHHhCCceeccccccchhhcccceEEEEEEEECC-CCCEEEEEecCC
Confidence 368999999999999999999999999999999999998764 688899999999999999996 689999998754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.4e-08 Score=119.75 Aligned_cols=272 Identities=10% Similarity=-0.010 Sum_probs=211.1
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-hhhHHHHHHHH
Q 000173 1658 AAEERLLEKDAPRTPDEFERLVRSSPNS-----SFVWIKYMAFMLSMADVEKARSIAERALQTINIRE-ENEKLNIWVAY 1731 (1935)
Q Consensus 1658 ~~e~~~~~~~~~~a~~~ferll~~~P~s-----~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e-e~Ekl~lW~ay 1731 (1935)
..+.....++..+|...|+++|...|++ ..+|..++..+...|++++|+..|+++++..+... .......+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3444455677889999999999998876 35677788899999999999999999997543221 12223445556
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCC-------H--HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-----CHHHH
Q 000173 1732 FNLENEYGNPPEEAVVKVFQRALQYCDP-------K--KVHLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVW 1797 (1935)
Q Consensus 1732 l~le~~~g~~~~e~a~~vferAl~~~~~-------~--~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~-----~~~vw 1797 (1935)
.......+ ....+...+.+++...+. . ..+..++.+|...++++.|...|.++....+. ....+
T Consensus 98 ~~~~~~~~--~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 98 SEILFAQG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 66677788 559999999999875321 1 57778899999999999999999999987643 34556
Q ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH
Q 000173 1798 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWS 1867 (1935)
Q Consensus 1798 ~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~----~dlw~ 1867 (1935)
...+..+... .+..+...+.++........ ...++...+.++...|++++|...|++++...|.. ...|.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 6667777777 99999999999988765432 13567778888999999999999999999887664 34577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1868 IYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1868 ~ya~~e~k~g~~e~ar~lferal~~----~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
..+..+...|+++.|..+|++++.. ...|... ..|..........|+.+.|...+++|++..+.
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN-RNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 7889999999999999999999852 3445555 46777777788899999999999999987653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=7.6e-11 Score=141.09 Aligned_cols=231 Identities=10% Similarity=0.022 Sum_probs=178.0
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLS----------MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1737 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~----------~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~ 1737 (1935)
.+++...|+++|..+|++..+|.....+... .+.+++|...++++++..|-. ..+|..+..+...
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~-----~~~~~~~~~~~~~ 119 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTWHHRCWLLSR 119 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc-----HHHHHHhhHHHHH
Confidence 4688889999999999999999776666443 334789999999999765532 3689888877777
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCH-HHH-HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHH-
Q 000173 1738 YGNPPEEAVVKVFQRALQYCDPK-KVH-LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQ- 1813 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~~~-~v~-~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~- 1813 (1935)
++....+.|...++++++.+|.. ..| ...+.++...+.+++|.+.|++++...|.+..+|..++..+... ++++|.
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 76434689999999999998864 555 45567888899999999999999999999999999999988876 443322
Q ss_pred -------------HHHHHHHHhCCCCChH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000173 1814 -------------AVVQRALLSLPRHKHI--------------KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1814 -------------~ll~ralk~~p~~~~~--------------~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw 1866 (1935)
..+..++...+.+... ..+...+..+...+++++|...|.+++..+|.+..+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 279 (334)
T d1dcea1 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 279 (334)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHH
Confidence 2222333333333211 2333455566667889999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000173 1867 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1906 (1935)
Q Consensus 1867 ~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~y 1906 (1935)
..++..+...|+.++|...|++++. +.|.+. ..|...
T Consensus 280 ~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~-~y~~~L 316 (334)
T d1dcea1 280 ILLMRALDPLLYEKETLQYFSTLKA--VDPMRA-AYLDDL 316 (334)
T ss_dssp HHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGH-HHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HCcccH-HHHHHH
Confidence 9999999999999999999999998 788777 466644
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Probab=99.08 E-value=6.8e-11 Score=111.58 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=68.0
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCccccc----CcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA----DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~----~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
++|+.+.|+|++++++|+||++.+++.||+|.+++++.+.. ++...|++||.|.|+|+++|+ ++++.||||+..+
T Consensus 6 k~GdvV~G~V~~v~~~g~fV~i~~~~~g~l~~se~~~~~~~~~~~~~~~~~~vGd~V~~kV~~vd~-~~~i~Ls~k~~~~ 84 (88)
T d2z0sa1 6 QAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQGEGL 84 (88)
T ss_dssp CTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECCSSSC
T ss_pred CCCCEEEEEEEEEECCeEEEEeCCCeEEEEehHHhCcccccccccchhhhcccCcEEEEEEEEECC-CCCEEEEEecCCC
Confidence 57999999999999999999999999999999999987654 677889999999999999996 4799999997643
|
| >d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.08 E-value=1.4e-10 Score=112.85 Aligned_cols=79 Identities=24% Similarity=0.425 Sum_probs=69.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-----------CCccccCCCCcEEEEEEEEEeCCCCE---
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-----------ESPEKEFPIGKLVAGRVLSVEPLSKR--- 1442 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~-----------~~~~~~f~~G~~V~~kVl~vd~~~~r--- 1442 (1935)
++|+++.|+|++|+++|+||+|+ +++|+||+++|+|+|. .++.+.|++||.|+++|++||.+.++
T Consensus 2 ~~gei~~g~V~~v~~~G~FVel~-~ieGlv~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkV~~vd~~~~~~~~ 80 (106)
T d1go3e1 2 EMYELIEGEVVDVVEFGSFVRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRG 80 (106)
T ss_dssp CTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-----
T ss_pred CCCCEEEEEEEEEeeeEEEEEee-CeEEEEEeecccCceeeeccceeEEeecccccceeecceEEEEEEEEchhhccccC
Confidence 57999999999999999999997 7999999999999876 47889999999999999999988776
Q ss_pred --EEEEEecCcccccc
Q 000173 1443 --VEVTLKTSDSRTAS 1456 (1935)
Q Consensus 1443 --i~lSlk~~~~~~~~ 1456 (1935)
+.||+|+...+||.
T Consensus 81 ~~i~ls~K~~~~~~~e 96 (106)
T d1go3e1 81 SKIALTMRQPYLGKLE 96 (106)
T ss_dssp CEEEEECCSTTCEEHH
T ss_pred ceeecccccCCCCcch
Confidence 77888887776654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1e-09 Score=125.28 Aligned_cols=218 Identities=13% Similarity=0.006 Sum_probs=158.9
Q ss_pred CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHH
Q 000173 1701 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLA 1779 (1935)
Q Consensus 1701 e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A 1779 (1935)
+.+.|..-+++++..... .+.++..+|.....++...| ..+.|...|++|++.+|.. .+|..++.+|.+.|++++|
T Consensus 14 ~~e~al~~~~e~l~~~~~-~~~~~a~~~~~~G~~y~~~g--~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 14 QQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLG--LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHh
Confidence 345566667777754442 23456678999999999999 4599999999999999875 9999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000173 1780 DELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1780 ~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~ 1858 (1935)
.+.|+++++..|....+|+.++..+... ++++|.+.|+++++..|... ..+...+..+...+..+.+..+++.....
T Consensus 91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--FRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH--HHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999 99999999999999998874 44444455555666666666666665555
Q ss_pred CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1859 YPKRTDLWSIYLDQEI----RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1859 ~Pk~~dlw~~ya~~e~----k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.+.... |.. +.+.. ..+..+.+...+...+. ..|... ..|.....+....|+.+.|...|++|+.
T Consensus 169 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 169 DKEQWG-WNI-VEFYLGNISEQTLMERLKADATDNTS--LAEHLS-ETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp CCCSTH-HHH-HHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhhhh-hhH-HHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 544432 221 11111 12223334444444443 334444 3555556677889999999999999984
|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Streptomyces antibioticus [TaxId: 1890]
Probab=99.01 E-value=6.5e-12 Score=109.30 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=36.2
Q ss_pred EEEEEEecCeEEEEECCCeEEEeeCCccCc----ccccCcccCccCCCEEEEEEEEeeCCC
Q 000173 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVD----GQRADLSKTYYVGQSVRSNILDVNSET 823 (1935)
Q Consensus 767 G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~----~~~~~~~~~f~~Gq~V~~~V~~vd~e~ 823 (1935)
|+|++|++||+||++.+|+.||+|+|+|++ .++.+|++.|++||.|+|+|+++|+++
T Consensus 1 G~V~~i~~fG~FV~l~~g~~Glihiseis~~~~~~~v~~~~~~~~~G~~V~vkV~~iD~~~ 61 (62)
T d1e3pa2 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRG 61 (62)
T ss_dssp CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCSSC
T ss_pred CEEEEEEeceEEEEecCCceEEEEHHHcccccccccccCHHHhcCCCCEEEEEEEEEcCCC
Confidence 789999999999999999999999999985 478899999999999999999999764
|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Streptomyces antibioticus [TaxId: 1890]
Probab=99.00 E-value=8.2e-12 Score=108.67 Aligned_cols=57 Identities=28% Similarity=0.626 Sum_probs=35.9
Q ss_pred eEEEEEeeceEEEEEecCceeEEeeccccCc----ccccCcccccCCCCEEEEEEEEEecCC
Q 000173 1474 GQIKRVESYGLFITIENTNLVGLCHVSELSE----DHVDNIETIYRAGEKVKVKILKVDKEK 1531 (1935)
Q Consensus 1474 G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~----~~~~~~~~~~~~Gd~V~~~Il~id~~~ 1531 (1935)
|+|++|.+||+||+|.+ +++||||+|||++ .+++++++.|++||.|+++|++||+++
T Consensus 1 G~V~~i~~fG~FV~l~~-g~~Glihiseis~~~~~~~v~~~~~~~~~G~~V~vkV~~iD~~~ 61 (62)
T d1e3pa2 1 GSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRG 61 (62)
T ss_dssp CBEEECC-CSCEECCC----CCCCC-------------------CCSSCBCCCCCCCCCSSC
T ss_pred CEEEEEEeceEEEEecC-CceEEEEHHHcccccccccccCHHHhcCCCCEEEEEEEEEcCCC
Confidence 78999999999999986 8999999999985 467899999999999999999999654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=1.8e-10 Score=137.70 Aligned_cols=196 Identities=8% Similarity=-0.090 Sum_probs=148.5
Q ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhccccchhhHHHHHHHHH-HHHHHcCCCCHHHH
Q 000173 1670 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMA--DVEKARSIAERALQTINIREENEKLNIWVAYF-NLENEYGNPPEEAV 1746 (1935)
Q Consensus 1670 ~a~~~ferll~~~P~s~~lW~~y~~~~l~~~--e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl-~le~~~g~~~~e~a 1746 (1935)
++...|++++..+|.+..+|..++..+...+ ++++|...+++++...|.. ...|...+ ......+ ..+.|
T Consensus 91 ~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~-----~~~~~~~~~~~~~~~~--~~~~A 163 (334)
T d1dcea1 91 AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-----FHCWDYRRFVAAQAAV--APAEE 163 (334)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTCC--CHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchh-----hhhhhhHHHHHHHhcc--ccHHH
Confidence 4566799999999999999999988877665 5899999999999765532 23555433 4445566 45999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHH--------------HhcCCCHHH---------------
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMI--------------KKFKHSCKV--------------- 1796 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~--------------k~~~~~~~v--------------- 1796 (1935)
.+.|+++++.+|.. ..|..++.+|.+.+++++|...+.+++ ...+....+
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~ 243 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLF 243 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhh
Confidence 99999999999875 999999999888887655433333222 222222222
Q ss_pred -HHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1797 -WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1797 -w~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
|..++..+... ++.+|...|.++++..|.. ..+|...|..+...|++++|...|+++++.+|.+...|..++..+.
T Consensus 244 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 244 RCELSVEKSTVLQSELESCKELQELEPENKWC--LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 33344444445 7888888999998888765 6899999999999999999999999999999999999988765443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.4e-08 Score=101.28 Aligned_cols=108 Identities=13% Similarity=-0.069 Sum_probs=98.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000173 1765 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1843 (1935)
Q Consensus 1765 ~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g 1843 (1935)
.-++.+...|++++|...|.++++..|.++.+|..++..+... ++++|...|.++++..|.. +.+|..+|..+...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch--hhHHHHHHHHHHHcc
Confidence 3457888899999999999999999999999999999999999 9999999999999999877 589999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1844 VADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1844 ~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
++++|...|+++++.+|++.++|..+..++.
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999998888764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=4.5e-08 Score=103.18 Aligned_cols=109 Identities=14% Similarity=0.025 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
+...++.|.+.++|++|.+.|+++++..|.+...|..++.+++.. ++++|...|++|++..|.+ +.+|..+|.+++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~--~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc--hHHHHHHHHHHHH
Confidence 344568888999999999999999999999999999999999999 9999999999999999887 6899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
.|++++|...|++++...|.+..++..|....
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999888876654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=2.7e-07 Score=108.52 Aligned_cols=243 Identities=11% Similarity=-0.002 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC------
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------ 1759 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~------ 1759 (1935)
+....-.+..++..|++++|...|++|+...|......+...+..+..++...| ..+.|...|++|++..+.
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~ 89 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQHDVWHY 89 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhcchHH
Confidence 344445677788999999999999999988776555556667778888889999 559999999999986432
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC--
Q 000173 1760 -KKVHLALLGLYERTEQNKLADELLYKMIKKFKH--------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-- 1827 (1935)
Q Consensus 1760 -~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~--------~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-- 1827 (1935)
...+..++.+|...+++..|...|.+++...+. ....+..++..+... +++.|...|.+++...+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 166777888999999999999999999875421 234566778888888 99999999999999876542
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ch
Q 000173 1828 -HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK-------RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP--PK 1897 (1935)
Q Consensus 1828 -~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk-------~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~--pk 1897 (1935)
....+...+..+...+++..+...+.++....+. ...+|...+.++...|+.+.|...|++++..... +.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 249 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 249 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence 3467777888889999999999999999887544 2346788888899999999999999998873221 11
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1898 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
.. ..|..........|+.+.+...+++|+...+
T Consensus 250 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 282 (366)
T d1hz4a_ 250 LQ-GQWRNIARAQILLGEFEPAEIVLEELNENAR 282 (366)
T ss_dssp GH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 22 2344445567788999999999999987654
|
| >d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of Ribosomal RNA-processing protein 4, RRP4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=9.3e-10 Score=104.77 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=64.8
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcc----------cccCcccccCCCCEEEEEEEEEecCCCeeE
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED----------HVDNIETIYRAGEKVKVKILKVDKEKRRIS 1535 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~----------~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ 1535 (1935)
.++|++|.|+|+++.++|+||.|.. ...|++|+|++++. .+.++.+.|++||.|.|+|+++|. .++|.
T Consensus 6 P~vGdiV~G~V~~v~~~g~~V~I~~-~~~g~l~is~i~~~~~~~rr~~~~~~~~~~~~~~~Gd~V~~kV~~v~~-dg~i~ 83 (95)
T d2nn6h1 6 GEVGDIVVGRITEVQQKRWKVETNS-RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS-DGAVS 83 (95)
T ss_dssp CCSSBCCCEEEEEEETTEEEEECSS-SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-TTEEE
T ss_pred CCCCCEEEEEEEEEecCcEEEEeCC-CceEEEEHHHccccccccccccchhhhhhhhhcccccEEEEEEEEECC-CCCEE
Confidence 4689999999999999999999975 78999999999753 334567889999999999999995 69999
Q ss_pred Eecccccc
Q 000173 1536 LGMKSSYF 1543 (1935)
Q Consensus 1536 lslK~~~~ 1543 (1935)
||+|...+
T Consensus 84 Ls~r~~~~ 91 (95)
T d2nn6h1 84 LHTRSLKY 91 (95)
T ss_dssp EECCSSTT
T ss_pred EEeccccC
Confidence 99987544
|
| >d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exoribonuclease 2, RNB species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=4.8e-09 Score=97.36 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=60.0
Q ss_pred CCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc------------CcccccCCCCEEEEEEEEEecCCCeeE
Q 000173 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD------------NIETIYRAGEKVKVKILKVDKEKRRIS 1535 (1935)
Q Consensus 1468 ~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~------------~~~~~~~~Gd~V~~~Il~id~~~~ri~ 1535 (1935)
.|+.++|.|+.|++||+||+|.+.+++||+|+|+|.+++.. +....|+.||.|+++|+++|+++++|.
T Consensus 3 ~~~~F~g~Is~v~~~GifV~L~e~~~eGlI~~s~L~~d~y~~d~~~~~l~~~~~~~~~~~~Gd~V~V~v~~vd~~~r~I~ 82 (87)
T d2ix0a3 3 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 82 (87)
T ss_dssp SCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTTEEE
T ss_pred CCCEEEEEEEEEEcCeEEEEEecCCcEEEEEehhCCCceEEEeccceEEEEEEcccEEEECCCEEEEEEEEEecccCeEE
Confidence 36789999999999999999987689999999999886531 124579999999999999999999996
Q ss_pred E
Q 000173 1536 L 1536 (1935)
Q Consensus 1536 l 1536 (1935)
+
T Consensus 83 ~ 83 (87)
T d2ix0a3 83 A 83 (87)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=2.3e-07 Score=100.88 Aligned_cols=120 Identities=8% Similarity=-0.079 Sum_probs=76.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1845 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~ 1845 (1935)
+..+...++++.|.+.|.++ .+.++.+|+++|..+... ++++|.+.|++|++..|.. +.+|...|.+++++|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~--~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh--hhhHHHHHHHHHhhccH
Confidence 45556666666666666543 234566666666666666 6666666666666666655 46666666666666666
Q ss_pred HHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1846 DRGRSMFEGILSEYPKR----------------TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1846 e~Ar~ife~al~~~Pk~----------------~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
++|...|++++...|.+ ..+|+.++.++.+.|++++|...|++|+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666666554432 34566667777777777777777777776
|
| >d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of Ribosomal RNA-processing protein 4, RRP4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=5e-09 Score=99.60 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=64.4
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc----------ccCCccccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG----------YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~----------~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lS 1446 (1935)
++|++|.|+|+++.++|+||+|+...+|++|+++++|. ++.++.+.|++||.|.|+|++++. ++++.||
T Consensus 7 ~vGdiV~G~V~~v~~~g~~V~I~~~~~g~l~is~i~~~~~~~rr~~~~~~~~~~~~~~~Gd~V~~kV~~v~~-dg~i~Ls 85 (95)
T d2nn6h1 7 EVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS-DGAVSLH 85 (95)
T ss_dssp CSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-TTEEEEE
T ss_pred CCCCEEEEEEEEEecCcEEEEeCCCceEEEEHHHccccccccccccchhhhhhhhhcccccEEEEEEEEECC-CCCEEEE
Confidence 58999999999999999999999999999999999763 234567789999999999999996 6999999
Q ss_pred EecCc
Q 000173 1447 LKTSD 1451 (1935)
Q Consensus 1447 lk~~~ 1451 (1935)
+|...
T Consensus 86 ~r~~~ 90 (95)
T d2nn6h1 86 TRSLK 90 (95)
T ss_dssp CCSST
T ss_pred ecccc
Confidence 98753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=3.7e-07 Score=106.14 Aligned_cols=206 Identities=12% Similarity=0.059 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC------
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------ 1759 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~-ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~------ 1759 (1935)
.+|.+.+..+...+++++|.+.|++|+...... +..+-...|....+++...+ ..+.|...|++|++..+.
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~--~~~~A~~~~~~a~~~~~~~~~~~~ 115 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--NSVNAVDSLENAIQIFTHRGQFRR 115 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHhhHHhhhcccchh
Confidence 578888899999999999999999999743211 12223467888888889999 559999999999977432
Q ss_pred -HHHHHHHHHHHHH-cCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh--
Q 000173 1760 -KKVHLALLGLYER-TEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-- 1828 (1935)
Q Consensus 1760 -~~v~~~l~~i~~~-~~~~~~A~el~~~~~k~~~~------~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-- 1828 (1935)
...+..++.+|.. .+++++|.+.|++++..++. ...+|..++.++... ++++|.+.|++++...+....
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~ 195 (290)
T d1qqea_ 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (290)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh
Confidence 2778888888866 59999999999999877531 256688999999999 999999999999998776431
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCc
Q 000173 1829 ---IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-----WSIYLDQEIR--LGDVDLIRGLFERAISLSLPP 1896 (1935)
Q Consensus 1829 ---~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl-----w~~ya~~e~k--~g~~e~ar~lferal~~~~~p 1896 (1935)
...+...+..++..|+++.|...|++++..+|...+- ...++..+.. .+.+++|...|+++.. +.|
T Consensus 196 ~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~--lD~ 271 (290)
T d1qqea_ 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDK 271 (290)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCH
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cCH
Confidence 2456667777888999999999999999988865443 2333332222 2336677777776555 544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=5e-08 Score=97.85 Aligned_cols=108 Identities=9% Similarity=0.022 Sum_probs=93.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000173 1765 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1840 (1935)
Q Consensus 1765 ~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~ 1840 (1935)
.+++-+...+++++|.+.|+++++..|.++.++++||.++++. ++++|..+|++++...|...++.+|+.+|..++
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4567777888999999999999999999999999999999864 667799999999988877666779999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1841 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1841 ~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
+.|++++|+..|+++|+..|.+...+.....+
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999998766544433
|
| >d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=3.8e-08 Score=92.94 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=59.7
Q ss_pred CCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc----------cCcccccCCCCEEEEEEEEEecCCCeeEE
Q 000173 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----------DNIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1935)
Q Consensus 1468 ~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~----------~~~~~~~~~Gd~V~~~Il~id~~~~ri~l 1536 (1935)
+|+++.|+|+++++||+||+|+ .++||+|++++.+++. .+....|+.||.|+++|+++|.++++|..
T Consensus 3 ~Gev~~g~I~~v~~~G~fv~lg--~~eg~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~i~~ 79 (91)
T d1y14b1 3 KGEVVDGTVVSCSQHGFEVQVG--PMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 79 (91)
T ss_dssp TTCEEEEEEEEEETTEEEEEET--TEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEEEE
T ss_pred CCCEEEEEEEEEEeeEEEEEEc--CeEEEEEhhhcCcceEEccccceeEecccCeEEeCCCEEEEEEEEEecccCccEE
Confidence 6999999999999999999995 5899999999987755 23456899999999999999999999865
|
| >d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exoribonuclease 2, RNB species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=5.2e-08 Score=90.28 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=58.4
Q ss_pred CCCEEEEEEEEEecCeEEEEEC-CCeEEEeeCCccCccccc------------CcccCccCCCEEEEEEEEeeCCCCeEE
Q 000173 761 PNSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRA------------DLSKTYYVGQSVRSNILDVNSETGRIT 827 (1935)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f~-~gl~Glv~~s~ls~~~~~------------~~~~~f~~Gq~V~~~V~~vd~e~~rl~ 827 (1935)
.|+.+.|.|++|+++|+||++. +++.||+|.|.|++++.. +....|++||.|+|+|+++|+++++|.
T Consensus 3 ~~~~F~g~Is~v~~~GifV~L~e~~~eGlI~~s~L~~d~y~~d~~~~~l~~~~~~~~~~~~Gd~V~V~v~~vd~~~r~I~ 82 (87)
T d2ix0a3 3 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 82 (87)
T ss_dssp SCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTTEEE
T ss_pred CCCEEEEEEEEEEcCeEEEEEecCCcEEEEEehhCCCceEEEeccceEEEEEEcccEEEECCCEEEEEEEEEecccCeEE
Confidence 3678999999999999999995 589999999999975421 133569999999999999999999996
Q ss_pred E
Q 000173 828 L 828 (1935)
Q Consensus 828 L 828 (1935)
+
T Consensus 83 ~ 83 (87)
T d2ix0a3 83 A 83 (87)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=4.4e-07 Score=90.11 Aligned_cols=107 Identities=11% Similarity=0.016 Sum_probs=97.4
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
.-|..++.. ++++|...|.++|+..|.. +.+|..+|..++..|++++|...|++++..+|.+...|..++..+...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcc--hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 346667778 9999999999999999988 5899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1878 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1878 ~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
+++.|...|++++. +.|... .+|..+..++
T Consensus 86 ~~~~A~~~~~~a~~--~~p~~~-~~~~~l~~l~ 115 (117)
T d1elwa_ 86 RFEEAKRTYEEGLK--HEANNP-QLKEGLQNME 115 (117)
T ss_dssp CHHHHHHHHHHHHT--TCTTCH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHh
Confidence 99999999999998 777776 5777766654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=6.7e-07 Score=97.16 Aligned_cols=133 Identities=11% Similarity=0.134 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
+.+|.. .......++ .+.|.+.|+++. .+...+|+.++.+|...|++++|.+.|+++++..|..+.+|++++..+
T Consensus 6 ~~l~~~-g~~~~~~~d--~~~Al~~~~~i~--~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 6 ISLWNE-GVLAADKKD--WKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHHH-HHHHHHTTC--HHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHCCC--HHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 346754 555577884 499999998752 234589999999999999999999999999999999999999999999
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCCh--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKH--------------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~--------------~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
.+. ++++|.+.|++|+..++.+.. ..++..+|.++...|++++|...|++++...|..
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999 999999999999998765422 4788999999999999999999999999998875
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=5.6e-07 Score=104.56 Aligned_cols=162 Identities=11% Similarity=0.019 Sum_probs=133.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------H
Q 000173 1728 WVAYFNLENEYGNPPEEAVVKVFQRALQYCD----P---KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------C 1794 (1935)
Q Consensus 1728 W~ayl~le~~~g~~~~e~a~~vferAl~~~~----~---~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~ 1794 (1935)
|...++++...+++ ++|...|++|+.... . -..|..++.+|.+.+++++|.+.|++++..++.. .
T Consensus 40 y~~aa~~y~~~~~~--~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 40 CVQAATIYRLRKEL--NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHTTCT--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCcCH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 33445677788866 999999999998742 1 2789999999999999999999999999887533 6
Q ss_pred HHHHHHHHHHHHc--CHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q 000173 1795 KVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT----- 1863 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~--~~e~A~~ll~ralk~~p~~~----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~----- 1863 (1935)
.++..++..+... ++++|.+.|++|+...+... ...++..+|.++...|++++|..+|++++...|...
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 6788888877664 99999999999998754432 136789999999999999999999999999887752
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1864 --DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1864 --dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.+|...+..+...++++.|+..|++++.
T Consensus 198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3566677777889999999999999987
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=6.4e-07 Score=94.02 Aligned_cols=104 Identities=11% Similarity=0.076 Sum_probs=93.3
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
..|..+++. ++++|...|+++++..|.+ ..+|..+|.+++..|++++|...|+++++.+|.+..+|..++..+...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhh--hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 345667788 9999999999999999987 6999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1878 DVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1878 ~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
++++|...|++++. +.|... .++..+.
T Consensus 93 ~~~eA~~~~~~a~~--~~p~~~-~~~~~l~ 119 (159)
T d1a17a_ 93 KFRAALRDYETVVK--VKPHDK-DAKMKYQ 119 (159)
T ss_dssp CHHHHHHHHHHHHH--HSTTCH-HHHHHHH
T ss_pred CHHHHHHHHHHHHH--cCCCCH-HHHHHHH
Confidence 99999999999999 666665 3444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=8e-08 Score=104.70 Aligned_cols=100 Identities=14% Similarity=-0.046 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
+-....++.|.+.|++++|...|++++...|.++.+|.++|.+++.. ++++|...|++|++..|.. +.+|..+|.++
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~--~~a~~~lg~~~ 82 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc--HHHHHHHHHHH
Confidence 34556788899999999999999999999999999999999999999 9999999999999998877 68999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
+..|++++|...|++++...|..
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999887754
|
| >d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.1e-07 Score=90.29 Aligned_cols=73 Identities=16% Similarity=0.326 Sum_probs=62.3
Q ss_pred CCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc------------cCcccccCCCCEEEEEEEEEecCCCeeE
Q 000173 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV------------DNIETIYRAGEKVKVKILKVDKEKRRIS 1535 (1935)
Q Consensus 1468 ~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~------------~~~~~~~~~Gd~V~~~Il~id~~~~ri~ 1535 (1935)
+|+++.|+|++++++|+||+|+ .++|++|++++.+++. ++....|+.||.|+++|++++.+.++|.
T Consensus 4 ~Gev~~g~V~~v~~~G~fv~lg--~~~~~v~~~~l~~d~~y~~~~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~I~ 81 (94)
T d2c35b1 4 KGEVVDAVVTQVNKVGLFTEIG--PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIF 81 (94)
T ss_dssp TTCEEEEEEEEEETTEEEEEET--TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEE
T ss_pred CCCEEEEEEEEEEeeEEEEEec--CceEEEEhhhcCcceeecccccceEEEcccceEEEeCCCEEEEEEEEEecCcCcce
Confidence 6999999999999999999995 4899999999998753 2334679999999999999999999987
Q ss_pred --Eeccccc
Q 000173 1536 --LGMKSSY 1542 (1935)
Q Consensus 1536 --lslK~~~ 1542 (1935)
.+|+..|
T Consensus 82 ~igt~~~d~ 90 (94)
T d2c35b1 82 AIGSLMDDY 90 (94)
T ss_dssp EEEECCSTT
T ss_pred EEEEccCCC
Confidence 4555544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.48 E-value=4.3e-07 Score=89.40 Aligned_cols=93 Identities=6% Similarity=-0.050 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1796 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1796 vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
.|+..+..+++. ++++|...|++++...|.+ +.+|..+|.++...|++++|...|+++++.+|.+..+|..++..+.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 95 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccccccc--chhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence 345556666666 6666666666666666655 4666666666666777777777777777777777677777777777
Q ss_pred HcCCHHHHHHHHHHHH
Q 000173 1875 RLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1875 k~g~~e~ar~lferal 1890 (1935)
..|+.++|...|+|+|
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 7777777777666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=9.3e-08 Score=120.26 Aligned_cols=204 Identities=9% Similarity=-0.043 Sum_probs=108.9
Q ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhh--HHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1670 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE--KLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1670 ~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~E--kl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
+|...|++++..+|+.+..|+.++..+...+++++| |++++..-|...+.. ...+|..- + ..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~---------y--~~~i 69 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHA---------F--KNQI 69 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHH---------T--HHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHH---------H--HHHH
Confidence 356788889988999988998888888888887765 888885433111100 01345310 1 2344
Q ss_pred HHHHHHHhcCCC---HHHHHHH-HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1748 KVFQRALQYCDP---KKVHLAL-LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1748 ~vferAl~~~~~---~~v~~~l-~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
+.|+.+.+.... ......+ ..++...+.|+.|...|.++....+.....|..++..+... +.+.|...++++++.
T Consensus 70 e~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 149 (497)
T d1ya0a1 70 TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY 149 (497)
T ss_dssp HHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH
T ss_pred HHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC
Confidence 445555543321 1222222 22333445556666666666655566666777777777666 777777777777665
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.| ..++..+|.++...|++++|+..|++|++.+|++...|+.++.++...|+...|...|.||+.
T Consensus 150 ~~----~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 150 IC----QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred CH----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43 146666777777777777777777777777777777777777777777777777777777776
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.7e-06 Score=91.82 Aligned_cols=112 Identities=15% Similarity=0.044 Sum_probs=77.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHS---------------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---------------~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
+...++.+.+.+++++|.+.|++++..++.. ..+|.+++.++++. ++++|...++++|...|.+
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~ 95 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 95 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccc
Confidence 3344556666666666666666666655422 24566677777777 7788888888888777766
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000173 1827 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1876 (1935)
Q Consensus 1827 ~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~ 1876 (1935)
+.+|...|.+++..|++++|...|+++++.+|.+..+...+..+..+.
T Consensus 96 --~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 96 --EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred --hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 577777777777788888888888888877777777766666655443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.43 E-value=6.4e-07 Score=88.13 Aligned_cols=94 Identities=10% Similarity=-0.022 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..++.++..+.+.|++++|...|+++++..|.++.+|..++..+.+. ++++|...|++|++..|.+ ..+|..+|..+
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~la~~y 94 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVSH 94 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc--ccchHHHHHHH
Confidence 44677788899999999999999999999999999999999999999 9999999999999999987 59999999999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 000173 1840 FKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al 1856 (1935)
...|+.++|...|+++|
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999999986
|
| >d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=4.3e-07 Score=85.54 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=60.1
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc----------CCccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV----------ESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~----------~~~~~~f~~G~~V~~kVl~vd~~~~ri~l 1445 (1935)
.|+++.|+|++++++|+||+++ .++|+||.++|.++|. .+..+.|+.|+.|+++|++++.+.+++.+
T Consensus 3 ~Gev~~g~I~~v~~~G~fv~lg-~~eg~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~i~~ 79 (91)
T d1y14b1 3 KGEVVDGTVVSCSQHGFEVQVG-PMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 79 (91)
T ss_dssp TTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEEEE
T ss_pred CCCEEEEEEEEEEeeEEEEEEc-CeEEEEEhhhcCcceEEccccceeEecccCeEEeCCCEEEEEEEEEecccCccEE
Confidence 6999999999999999999998 5899999999998875 23456799999999999999999998865
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.33 E-value=2.3e-06 Score=89.12 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
.+|.+++.++++. ++++|.+.|++||...|.+ +.+|...|..++..|+++.|+..|+++++.+|.+..++..+..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~--~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN--VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchh--hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4667777777777 8888888888888887766 578888888888888888888888888888888877777766554
Q ss_pred HH
Q 000173 1874 IR 1875 (1935)
Q Consensus 1874 ~k 1875 (1935)
.+
T Consensus 146 ~k 147 (153)
T d2fbna1 146 NK 147 (153)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.33 E-value=5.7e-06 Score=87.43 Aligned_cols=113 Identities=12% Similarity=-0.007 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCC---------------CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKH---------------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~---------------~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
+...++.+.+.|++.+|...|.+++...+. ...+|++++.+++.. ++++|...++++++..|.+
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~ 97 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence 444556666667777777777666654321 133456667777777 7777777777777777665
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1827 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1827 ~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
+.+|...|..++..|++++|...|++++..+|.+..++..+..+..+.+
T Consensus 98 --~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 98 --EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 5777777777777777777777777777777777777666666655443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=8.7e-07 Score=96.19 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
+..-....|..++.. ++++|...|++|+...|.+ +.+|..+|..+++.|++++|...|+++++.+|++...|..++.
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~--~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 344456678888888 9999999999999999987 6999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 000173 1872 QEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1872 ~e~k~g~~e~ar~lferal~ 1891 (1935)
++.+.|+++.|...|++|+.
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999997
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.1e-05 Score=85.41 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------IKFISQTAILEFKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-------------~~~~~~~a~le~~~g~~e~Ar~ife~al~~~ 1859 (1935)
...+...|..+++. ++++|...|++|+..+|.... ..+|..+|..+++.|++++|...++++|..+
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 34455677788888 999999999999999886432 3677889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1860 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1860 Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
|.+..+|...+..+...|++++|+..|++++. +.|.+. .+...+....
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~-~~~~~l~~~~ 140 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNK-AAKTQLAVCQ 140 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH-HHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHH
Confidence 99999999999999999999999999999999 666665 3444444443
|
| >d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1.3e-06 Score=82.57 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=58.0
Q ss_pred CCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccc------------cCcccCccCCCEEEEEEEEeeCCCCeEE
Q 000173 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR------------ADLSKTYYVGQSVRSNILDVNSETGRIT 827 (1935)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~------------~~~~~~f~~Gq~V~~~V~~vd~e~~rl~ 827 (1935)
.|+++.|.|++++++|+||++ |.+.||+|+++|.+++. .+....|++||.|++||++++.+.+++.
T Consensus 4 ~Gev~~g~V~~v~~~G~fv~l-g~~~~~v~~~~l~~d~~y~~~~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~I~ 81 (94)
T d2c35b1 4 KGEVVDAVVTQVNKVGLFTEI-GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIF 81 (94)
T ss_dssp TTCEEEEEEEEEETTEEEEEE-TTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEE
T ss_pred CCCEEEEEEEEEEeeEEEEEe-cCceEEEEhhhcCcceeecccccceEEEcccceEEEeCCCEEEEEEEEEecCcCcce
Confidence 499999999999999999999 68999999999997752 2233468999999999999999999985
|
| >d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome component 3 (RRP40) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=9.4e-07 Score=81.78 Aligned_cols=73 Identities=10% Similarity=0.042 Sum_probs=65.6
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.++||+|-|+|+++..+|.||.|.. ...|++|++++. ..+++....|++||.|.|+|.++| ..+++.||...+
T Consensus 4 P~~GD~ViG~V~~~~~~~~~VdI~s-~~~a~L~~~~f~-g~~k~~r~~l~~GD~V~arV~~v~-~~~~~~Lscvd~ 76 (88)
T d2nn6g1 4 PVKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVAN-KDMEPEMVCIDS 76 (88)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSS-SSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECC-TTSCCEEECSBT
T ss_pred CCCCCEEEEEEEEEeCCeEEEEcCC-CeeEEEeHHHcC-ccccccCcccCCCCEEEEEEEEeC-CCCCEEEEEEcc
Confidence 4789999999999999999999975 789999999994 567888899999999999999999 568999988654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.20 E-value=6.4e-06 Score=87.07 Aligned_cols=107 Identities=13% Similarity=0.016 Sum_probs=53.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhc----------------CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1765 ALLGLYERTEQNKLADELLYKMIKKF----------------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1765 ~l~~i~~~~~~~~~A~el~~~~~k~~----------------~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
..++.+...+++.+|.+.|.++++.. +....+|.+++..+.+. ++++|...|.+||+..|.+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~- 110 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN- 110 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh-
Confidence 34455666677777777777666432 12233444444444444 4555555555555444433
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
+.+|...|..++..|++++|...|+++++..|++.+++..+..+.
T Consensus 111 -~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 111 -TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344445555555555555555555555555554444444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.16 E-value=2.4e-05 Score=82.51 Aligned_cols=130 Identities=10% Similarity=0.035 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------IKFISQTAILEFKNGVADRGRSMFEGILSEYP 1860 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-------------~~~~~~~a~le~~~g~~e~Ar~ife~al~~~P 1860 (1935)
..+...|..+++. ++++|...|++|+..++.... ..++.+.|..+++.|++++|...|++++..+|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 4455667778888 999999999999987765322 35677899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 000173 1861 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE-EERIEYVKQKAM 1927 (1935)
Q Consensus 1861 k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~-~e~a~~v~~rAl 1927 (1935)
.+...|...+..+...|++++|+..|++++. +.|.+. .++..+.......+. .+..+.+|.+..
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~-~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNK-AARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 777776 566666555444332 223344444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=5.9e-06 Score=82.32 Aligned_cols=97 Identities=11% Similarity=0.029 Sum_probs=83.5
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKR--TDLWSIYLDQ 1872 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g---~~e~Ar~ife~al~~~Pk~--~dlw~~ya~~ 1872 (1935)
.++..+... ++++|.+.|+++|+..|.+ +.++..||.++++.+ ++++|..+|++++...|.. .++|+.++..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~--~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345556666 8999999999999999988 699999999998755 4567999999999988765 5689999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1873 EIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1873 e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
+.+.|++++|+..|++++. +.|...
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 9999999999999999999 666654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.13 E-value=2.1e-05 Score=81.60 Aligned_cols=126 Identities=11% Similarity=-0.022 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
.|...++.+.+.++|.+|...|.+++..++.... ..+.......+.+. ..++.+.|..+++
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~------------~~~~~~~~~~~~~~-------~~~~~Nla~~~~~ 79 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE------------WDDQILLDKKKNIE-------ISCNLNLATCYNK 79 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT------------CCCHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh------------hhhHHHHHhhhhHH-------HHHHhhHHHHHHH
Confidence 3444555666666666666666666654432111 00111111111111 3578899999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~ 1909 (1935)
.|++++|...|+++|..+|.+...|+..+..+...|+++.|+..|++++. +.|.+. .++..+...
T Consensus 80 l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~-~~~~~l~~~ 144 (153)
T d2fbna1 80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNL-DIRNSYELC 144 (153)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHH
T ss_pred hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 777776 466555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.5e-05 Score=80.07 Aligned_cols=99 Identities=9% Similarity=-0.010 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-----HHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-----IKFISQTA 1836 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-----~~~~~~~a 1836 (1935)
|..+++.|.+.++|++|.+.|.+++...|....+|.+++..+.+. ++++|...|++|++..|.... ..+|...|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 456777788888888888888888888888888888888888888 888888888888887665431 13566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
..+...+++++|...|++++...|.
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 6777777888888888888777664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.12 E-value=4.7e-06 Score=85.87 Aligned_cols=101 Identities=14% Similarity=0.022 Sum_probs=82.6
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1770 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----------QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1770 ~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-----------~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
|.+.+.+++|...|+++++..|+++.+|+.++..+... .+++|...|++|++..|.+ ..+|..+|..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~--~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--DEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh--hHHHhhHHHH
Confidence 45667788999999999999999999999999888743 4688999999999999887 5889999988
Q ss_pred HHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1839 EFKNGV-----------ADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1839 e~~~g~-----------~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
+...|. +++|...|++++...|.+...|..+...
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence 876553 6889999999999999987776655444
|
| >d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome component 3 (RRP40) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=2.2e-06 Score=79.22 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=66.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
++||+|-|+|++++.+|.||+|+....|++|++++. .++++.+..|++||.|.|+|.++++ .+++.||...+.
T Consensus 5 ~~GD~ViG~V~~~~~~~~~VdI~s~~~a~L~~~~f~-g~~k~~r~~l~~GD~V~arV~~v~~-~~~~~Lscvd~~ 77 (88)
T d2nn6g1 5 VKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCIDSC 77 (88)
T ss_dssp CSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECSBTT
T ss_pred CCCCEEEEEEEEEeCCeEEEEcCCCeeEEEeHHHcC-ccccccCcccCCCCEEEEEEEEeCC-CCCEEEEEEccc
Confidence 689999999999999999999999999999999995 5788899999999999999999995 789999886643
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=2.5e-05 Score=97.45 Aligned_cols=192 Identities=7% Similarity=-0.071 Sum_probs=112.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHH-HHHHcCCCCHHHHHHHHHH
Q 000173 1674 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN-LENEYGNPPEEAVVKVFQR 1752 (1935)
Q Consensus 1674 ~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~-le~~~g~~~~e~a~~vfer 1752 (1935)
.|+++|..+|+.+....... .+-...+..+.+.++...+... ..+.. .+...+.. +....+.+ +.|...|++
T Consensus 39 aye~~i~~dp~~a~~~~~e~--~Lw~~~y~~~ie~~r~~~k~~~-~~~~~--~~~~~~~~~l~~a~~~Y--~~ai~~l~~ 111 (497)
T d1ya0a1 39 LYQKMLVTDLEYALDKKVEQ--DLWNHAFKNQITTLQGQAKNRA-NPNRS--EVQANLSLFLEAASGFY--TQLLQELCT 111 (497)
T ss_dssp HHHHHHHHCHHHHHHHTHHH--HHHHHHTHHHHHHHHHHHSCSS-CTTTT--HHHHHHHHHHHHHHHHH--HHHHHHHTC
T ss_pred HHHHHHHcChhhHHHHhHHH--HHHHHHHHHHHHHHHHhccccc-CccHH--HHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 48888888886443321111 1111123456666666664322 11111 12222222 22233422 566666666
Q ss_pred HHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1753 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1753 Al~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
+++..+.. ..|..++..+...+++++|...|.+++... ....|+.+|..+... ++++|+..|++|++..|... .
T Consensus 112 ~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~--~ 187 (497)
T d1ya0a1 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG--Q 187 (497)
T ss_dssp -------------------------------CCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS--H
T ss_pred HHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch--H
Confidence 66666554 888999999999999999999999988765 357889999998888 99999999999999999985 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1876 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~ 1876 (1935)
.|.++|.++...|+..+|...|.++|...|.....|..+..+..+.
T Consensus 188 ~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 188 PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988776653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=2.6e-05 Score=82.18 Aligned_cols=124 Identities=11% Similarity=-0.022 Sum_probs=92.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Q 000173 1693 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYE 1771 (1935)
Q Consensus 1693 ~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~ 1771 (1935)
+..+...+++++|...|.+|++..+.. .... . ........|. ...|..++.+|.
T Consensus 34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~----------------~~~~--~-------~~~~~~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 34 GNTFFKSQNWEMAIKKYTKVLRYVEGS----------------RAAA--E-------DADGAKLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH----------------HHHS--C-------HHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhh----------------hhhh--h-------hHHHHHhChhhHHHHHHHHHHHH
Confidence 445567899999999999999643310 0111 0 0111122222 267888889999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000173 1772 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1843 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g 1843 (1935)
+.+++++|...|.++++..|.+..+|+++|..+... ++++|.+.|++|++..|.+. .++..++.++....
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~--~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK--AIQAELLKVKQKIK 159 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999998874 66666666655443
|
| >d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome component 3 (RRP40) species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=97.94 E-value=8.9e-06 Score=75.42 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=67.5
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1542 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~ 1542 (1935)
.++||+|-|+|.++..+|.||.|.+ ...|++|.++..+...++....|.+||.|.|+|.++| ..+.+.||++.+.
T Consensus 5 P~~gD~ViG~V~~~~~~~~~vdI~~-~~~~~L~~~~~f~g~~k~~r~~l~~GDlV~arV~~v~-~~~~~~Lsc~~~~ 79 (90)
T d2ja9a1 5 PSVNDFVIGVIIGTFSDSYKVSLQN-FSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAE-KELEAEIECFDST 79 (90)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESST-TSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECC-TTSCCEEESSCTT
T ss_pred CCCCCEEEEEEEEEeCCcEEEEcCC-cchhhhhhhhccCccccccCCccCCCCEEEEEEEEEC-CCCCEEEEEeccc
Confidence 4789999999999999999999964 6899999999998888889999999999999999999 5688999987643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.92 E-value=0.0018 Score=72.45 Aligned_cols=225 Identities=10% Similarity=-0.096 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHhcCCCHHH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY-G-NPPEEAVVKVFQRALQYCDPKKV 1762 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~-g-~~~~e~a~~vferAl~~~~~~~v 1762 (1935)
++..|+.++..+.+.+++++|.+.|++|.+.-+ ...+..+..++..- + ..+...|...++.+.+.... ..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~-------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~-~a 72 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE-------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS-NG 72 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc-ch
Confidence 466888888888888999999999999875422 23455555554441 1 11457888888888776644 33
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHhCCCCChHHHHH
Q 000173 1763 HLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGVQAVVQRALLSLPRHKHIKFIS 1833 (1935)
Q Consensus 1763 ~~~l~~i~~~----~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-----~~e~A~~ll~ralk~~p~~~~~~~~~ 1833 (1935)
+..++.++.. ....+.|...|+++.+. ........++..+... ....|...+.++.... . ...+.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~--~~~~~ 146 (265)
T d1ouva_ 73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D--GDGCT 146 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C--HHHHH
T ss_pred hhccccccccccccchhhHHHHHHHhhhhhh--hhhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc--c--cchhh
Confidence 4555555544 46778888888888765 3445555555555542 6777777777776542 2 46788
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1834 QTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1834 ~~a~le~~----~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
.+|.++.. ..+...+...++.+.. +.+.+.+..++.++.. ..++++|..+|+++..... ..+ .|..
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--~~a--~~~L 220 (265)
T d1ouva_ 147 ILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGG--CFNL 220 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHH--HHHH
T ss_pred hhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcccC--HHH--HHHH
Confidence 88887775 3467788888888764 4567778888877776 5688889999999888332 222 2322
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVG---EEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1906 yl~~E~~~G---~~e~a~~v~~rAle~ 1929 (1935)
=.-++...| |.+.|...|++|.+.
T Consensus 221 G~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 222232233 677788888887653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=2.7e-05 Score=78.08 Aligned_cols=95 Identities=9% Similarity=0.081 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-------
Q 000173 1796 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS------- 1867 (1935)
Q Consensus 1796 vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~------- 1867 (1935)
.|...+..++.. ++++|...|.+++...|.+ +.+|..+|..+++.|++++|...|++++...|++...|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTN--MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456788889999 9999999999999999976 689999999999999999999999999999888765444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1868 IYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1868 ~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
..++.+...++++.|...|++++..
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4555566778899999999999873
|
| >d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome component 3 (RRP40) species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=97.89 E-value=1e-05 Score=74.96 Aligned_cols=74 Identities=20% Similarity=0.134 Sum_probs=68.0
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
++||+|-|+|.++...+.||+|+....|++|.+...+...++.+..|++||.|.|+|.++++ ++.++||.+...
T Consensus 6 ~~gD~ViG~V~~~~~~~~~vdI~~~~~~~L~~~~~f~g~~k~~r~~l~~GDlV~arV~~v~~-~~~~~Lsc~~~~ 79 (90)
T d2ja9a1 6 SVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEK-ELEAEIECFDST 79 (90)
T ss_dssp CTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEESSCTT
T ss_pred CCCCEEEEEEEEEeCCcEEEEcCCcchhhhhhhhccCccccccCCccCCCCEEEEEEEEECC-CCCEEEEEeccc
Confidence 68999999999999999999999889999999998888899999999999999999999995 788999986643
|
| >d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 domain of NusA species: Thermotoga maritima [TaxId: 2336]
Probab=97.89 E-value=2.8e-05 Score=68.52 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=57.5
Q ss_pred CCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCce
Q 000173 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338 (1935)
Q Consensus 1259 ~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~ 1338 (1935)
.|++++|+|.++.+. .++|+|+ +.+|++|.+|.. |.+.|++|+.|+|.|.+++++.+| .
T Consensus 8 ~geiv~G~V~r~~~~--~~~Vdlg-~~eaiLp~~eqi-----------------p~E~~~~Gdrik~~i~~V~~~~kg-p 66 (72)
T d1hh2p1 8 KGTVTTAEVIRVMGE--WADIRIG-KLETRLPKKEWI-----------------PGEEIKAGDLVKVYIIDVVKTTKG-P 66 (72)
T ss_dssp TTCEEEEEEEEECSS--EEEEEET-TEEEEEEGGGSC-----------------TTCCCCTTCEEEEEEEEEEEETTE-E
T ss_pred cCcEEEEEEEEEcCC--CEEEEEC-CcEEECCHHHcC-----------------CCCCCCCCCEEEEEEEEEEEcCCC-C
Confidence 899999999999988 9999998 799999998862 778999999999999999887654 5
Q ss_pred EEEEee
Q 000173 1339 HVELSL 1344 (1935)
Q Consensus 1339 ~i~lSl 1344 (1935)
.+.||.
T Consensus 67 qI~lSR 72 (72)
T d1hh2p1 67 KILVSR 72 (72)
T ss_dssp EEEEES
T ss_pred eEEEeC
Confidence 788774
|
| >d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 domain of NusA species: Thermotoga maritima [TaxId: 2336]
Probab=97.82 E-value=4.1e-05 Score=67.46 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=54.8
Q ss_pred CCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCC--EEEEE
Q 000173 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLS 653 (1935)
Q Consensus 584 ~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~--ri~lS 653 (1935)
+.|+++.|+|.++.+.+++|++ |++.|++|.++.. |.+.|++|+.++|.|.+++...+ .|.||
T Consensus 7 ~~geiv~G~V~r~~~~~~~Vdl-g~~eaiLp~~eqi------p~E~~~~Gdrik~~i~~V~~~~kgpqI~lS 71 (72)
T d1hh2p1 7 LKGTVTTAEVIRVMGEWADIRI-GKLETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVS 71 (72)
T ss_dssp CTTCEEEEEEEEECSSEEEEEE-TTEEEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEE
T ss_pred ccCcEEEEEEEEEcCCCEEEEE-CCcEEECCHHHcC------CCCCCCCCCEEEEEEEEEEEcCCCCeEEEe
Confidence 5799999999999999999999 6899999999983 66899999999999999986654 35554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.69 E-value=5.6e-05 Score=77.50 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN----------GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~----------g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
.+++|+..|++|++..|.+ +.+|..+|..++.. +.+++|...|+++++.+|++.+.|..++..+...|
T Consensus 12 ~fe~A~~~~e~al~~~P~~--~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 12 LFEQIRQDAENTYKSNPLD--ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCcc--hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence 6899999999999999988 58999999988743 45689999999999999999999999998887654
Q ss_pred -----------CHHHHHHHHHHHHhcCCCchhH
Q 000173 1878 -----------DVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1878 -----------~~e~ar~lferal~~~~~pk~~ 1899 (1935)
.+++|...|++++. +.|.+.
T Consensus 90 ~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~ 120 (145)
T d1zu2a1 90 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNT 120 (145)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred cchhhHHHHHHhHHHhhhhhhcccc--cCCCHH
Confidence 35778889999998 777665
|
| >d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exosome component 1, EXOSC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.0001 Score=72.51 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=62.1
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEec-------CceeEEeeccccC--cccccCcccccCCCCEEEEEEEEEecCCCeeEE
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIEN-------TNLVGLCHVSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~-------~~v~Gl~h~sels--~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~l 1536 (1935)
.++||+|-|+|+++.+..++|+|.. ..+.|++|.+++. +....++.+.|++||.|+|+|+++...+.-+.|
T Consensus 5 P~vGDiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~g~i~~~dvr~te~d~~~m~~~fr~GDiV~A~Vis~~~~~~~~~L 84 (125)
T d2nn6i1 5 PDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLL 84 (125)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEEEecCCEEEEEEeEecCcccccCccccccHHHcccchhhhhhHHHhcCCCCEEEEEEEEccCCCccEEE
Confidence 4789999999999999999999941 1577999999984 444456889999999999999999855556888
Q ss_pred eccc
Q 000173 1537 GMKS 1540 (1935)
Q Consensus 1537 slK~ 1540 (1935)
|.+.
T Consensus 85 st~~ 88 (125)
T d2nn6i1 85 TTAE 88 (125)
T ss_dssp ECCS
T ss_pred EecC
Confidence 8755
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.47 E-value=0.006 Score=68.05 Aligned_cols=208 Identities=11% Similarity=-0.049 Sum_probs=154.5
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHc--C
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY--G 1739 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~----~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~--g 1739 (1935)
.+..+|...|+++.. .++...+..++.++.. ..++.+|+..++++...... ..|..+..+.... .
T Consensus 16 ~d~~~A~~~~~kAa~--~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~-------~a~~~l~~~~~~~~~~ 86 (265)
T d1ouva_ 16 KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS-------NGCHLLGNLYYSGQGV 86 (265)
T ss_dssp TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc-------chhhcccccccccccc
Confidence 345667888998864 4688899999999887 66999999999999965432 2344444443331 1
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CHH
Q 000173 1740 NPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQE 1810 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~----~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-----~~e 1810 (1935)
....+.|...|+++....+.. ....++..+.. ......|...+..... ......|..++.++... +..
T Consensus 87 ~~~~~~a~~~~~~a~~~g~~~-a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~ 163 (265)
T d1ouva_ 87 SQNTNKALQYYSKACDLKYAE-GCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLK 163 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred chhhHHHHHHHhhhhhhhhhh-HHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccc
Confidence 124688999999999876544 23334444443 3456677777776655 46888999999999973 888
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHH
Q 000173 1811 GVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLI 1882 (1935)
Q Consensus 1811 ~A~~ll~ralk~~p~~~~~~~~~~~a~le~~----~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e~a 1882 (1935)
.+...++++.... +..++..+|.+++. ..++++|..+|+++... .+...++.++.++.. ..+.+.|
T Consensus 164 ~~~~~~~~a~~~g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A 237 (265)
T d1ouva_ 164 KALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQA 237 (265)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred cchhhhhcccccc----ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHH
Confidence 8999999988642 36889999988876 56899999999999876 456788888998875 3478899
Q ss_pred HHHHHHHHh
Q 000173 1883 RGLFERAIS 1891 (1935)
Q Consensus 1883 r~lferal~ 1891 (1935)
...|++|..
T Consensus 238 ~~~~~kAa~ 246 (265)
T d1ouva_ 238 IENFKKGCK 246 (265)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999998
|
| >d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exosome component 1, EXOSC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.00015 Score=71.38 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=64.6
Q ss_pred CCCCEEEEEEEEEeeceEEEEe--------CCCcEEEEECccC--CCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIML--------SRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l--------~~~v~g~V~~s~l--sd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lS 1446 (1935)
++||+|-|+|+++..+.++|+| +....|.+|.+|+ ++.+..++.+.|++||.|.|+|+++......+.||
T Consensus 6 ~vGDiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~g~i~~~dvr~te~d~~~m~~~fr~GDiV~A~Vis~~~~~~~~~Ls 85 (125)
T d2nn6i1 6 DVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLT 85 (125)
T ss_dssp CTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEEEEecCCEEEEEEeEecCcccccCccccccHHHcccchhhhhhHHHhcCCCCEEEEEEEEccCCCccEEEE
Confidence 6899999999999999999998 4467899999998 45566788999999999999999998655679999
Q ss_pred EecCc
Q 000173 1447 LKTSD 1451 (1935)
Q Consensus 1447 lk~~~ 1451 (1935)
.+..+
T Consensus 86 t~~~~ 90 (125)
T d2nn6i1 86 TAENE 90 (125)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 87644
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.00028 Score=66.38 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-----KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~-----~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw 1866 (1935)
+.+-++.+|..+.++ ++++|...|++|++..|.. ....++..+|..+++.|++++|...|+++|+.+|++..++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 345566777777777 7777777777777765442 2257788888888899999999999999999999988888
Q ss_pred HHHHHHHH
Q 000173 1867 SIYLDQEI 1874 (1935)
Q Consensus 1867 ~~ya~~e~ 1874 (1935)
..+..++.
T Consensus 84 ~Nl~~~~~ 91 (95)
T d1tjca_ 84 GNLKYFEY 91 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87665543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.46 E-value=0.00012 Score=82.76 Aligned_cols=118 Identities=10% Similarity=-0.037 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
++++|...|+++++..|.+ ..++..++++++..|++++|...|+++++.+|.....|..|+.+....+..+.+..-+.
T Consensus 11 ~l~eAl~~l~~al~~~P~d--~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~ 88 (264)
T d1zbpa1 11 QLQQALELLIEAIKASPKD--ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 88 (264)
T ss_dssp CHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhh
Confidence 6677777777777777666 46777777777777777777777777777777776677666666554433332222111
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1888 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1888 ral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
+... -..|... ..+..........|+.+.|...+++|.+.
T Consensus 89 ~~~~-~~~p~~~-~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 89 TAKV-LGENEEL-TKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp CEEC-CCSCHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhc-ccCchHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 1111 1122222 12222233344566777777777666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.45 E-value=3e-05 Score=87.87 Aligned_cols=125 Identities=10% Similarity=-0.011 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHH
Q 000173 1742 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1819 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ra 1819 (1935)
..+.|...|+++++.+|.+ ..|..++.+|...|++++|...|+++++..|+....|..|+..+... ..+++...+.+.
T Consensus 11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~ 90 (264)
T d1zbpa1 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATA 90 (264)
T ss_dssp CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCE
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhh
Confidence 4588888888888888875 88888888888888888888888888888888888888888776654 444433332222
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1820 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
....+ ......+...+..+...|+.++|..+++++.+..|....+|.
T Consensus 91 ~~~~~-p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 91 KVLGE-NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp ECCCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred hcccC-chHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 22111 222455666677777888888888888888888887655443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.42 E-value=0.00038 Score=73.79 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1840 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~ 1840 (1935)
..+...+.-....|++++|.+.|.+++..++...-.++....+.. .. +.-+.. ..+.+|...+..+.
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~----~~-r~~l~~--------~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVE----PF-ATALVE--------DKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHH----HH-HHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHH----HH-HHHHHH--------HHHHHHHHHHHHHH
Confidence 455666677788899999999999999887655433322222111 11 111111 12578899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1841 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1841 ~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..|++++|...+++++..+|.+..+|..++..+...|+..+|...|+++..
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999854
|
| >d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 domain of NusA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.37 E-value=0.00022 Score=63.22 Aligned_cols=68 Identities=32% Similarity=0.477 Sum_probs=56.8
Q ss_pred CCCEEEEEEEEEEcC--cCeEEEEeC---CceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecC
Q 000173 1259 EGDIVGGRISKILSG--VGGLVVQIG---PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1333 (1935)
Q Consensus 1259 ~G~iv~g~V~~v~~~--~~g~~V~l~---~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~ 1333 (1935)
.|++++|.|.++... .+.++|+|| ++.+|++|.+|.. |.+.|++|+.|+|+|.++...
T Consensus 4 ~geiv~G~V~r~~~~~~~~~v~vdlG~~~~~~EaiLp~~eqi-----------------p~E~y~~Gdrik~~i~~V~~~ 66 (76)
T d2asba1 4 EGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV-----------------PGESYEHGNRLRCYVVGVTRG 66 (76)
T ss_dssp TTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC-----------------TTCCCCTTCEEEEEEEEEECC
T ss_pred cceEEEEEEEEEecCCCceEEEEECCCCCCCEEEECCHHHcC-----------------CCcccCCCCEEEEEEEEEEec
Confidence 899999999998753 113899998 4799999988761 789999999999999999988
Q ss_pred CCCceEEEEee
Q 000173 1334 VRGTFHVELSL 1344 (1935)
Q Consensus 1334 ~~g~~~i~lSl 1344 (1935)
.+| ..|.||.
T Consensus 67 ~kG-p~IilSR 76 (76)
T d2asba1 67 ARE-PLITLSR 76 (76)
T ss_dssp SSS-CEEEEES
T ss_pred CCC-CEEEEeC
Confidence 775 5788874
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.31 E-value=0.00027 Score=73.04 Aligned_cols=95 Identities=9% Similarity=-0.033 Sum_probs=59.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC-------
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKHS------------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH------- 1826 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~~------------~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~------- 1826 (1935)
+..+.+.|+|++|.+.|++++..++.. ..+|.+++..+... ++++|...+++++..+|..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 455666777777777777777766532 24566666666666 7777777666666654321
Q ss_pred --ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1827 --KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1827 --~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
....++...|..+...|++++|...|+++++.+|+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 01235566667777777777777777777666543
|
| >d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 domain of NusA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.23 E-value=0.00041 Score=61.44 Aligned_cols=64 Identities=25% Similarity=0.431 Sum_probs=52.9
Q ss_pred CCCcEEEEEEEEEecce----EEEEEc---CCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCC--EEEEE
Q 000173 584 TDRLITHGWITKIEKHG----CFVRFY---NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLS 653 (1935)
Q Consensus 584 ~~G~~~~g~V~~i~~~G----~~V~~~---~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~--ri~lS 653 (1935)
+.|+++.|+|.++.... ++|+++ +++.|++|.+|. -|.+.|+.|+.++|.|.+++...+ .|.||
T Consensus 3 r~geiv~G~V~r~~~~~~~~~v~vdlG~~~~~~EaiLp~~eq------ip~E~y~~Gdrik~~i~~V~~~~kGp~IilS 75 (76)
T d2asba1 3 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQ------VPGESYEHGNRLRCYVVGVTRGAREPLITLS 75 (76)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGS------CTTCCCCTTCEEEEEEEEEECCSSSCEEEEE
T ss_pred ccceEEEEEEEEEecCCCceEEEEECCCCCCCEEEECCHHHc------CCCcccCCCCEEEEEEEEEEecCCCCEEEEe
Confidence 57999999999987533 899996 579999999998 466899999999999999986543 45555
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.0014 Score=61.42 Aligned_cols=77 Identities=9% Similarity=0.067 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKH-------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1833 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~-------~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~ 1833 (1935)
-++.++.++.+.+++..|...|+++++.++. ...++.+++..+.+. ++++|...|+++|+..|.+ ..++.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~--~~a~~ 84 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH--QRANG 84 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC--HHHHH
Confidence 4567778888888888888888888877642 256788888888888 8888888888888888877 36777
Q ss_pred HHHHHHH
Q 000173 1834 QTAILEF 1840 (1935)
Q Consensus 1834 ~~a~le~ 1840 (1935)
+++.++.
T Consensus 85 Nl~~~~~ 91 (95)
T d1tjca_ 85 NLKYFEY 91 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.00 E-value=0.0018 Score=66.50 Aligned_cols=91 Identities=14% Similarity=-0.032 Sum_probs=75.3
Q ss_pred HHHHHHc-CHHHHHHHHHHHHHhCCCCC----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 000173 1801 VQRLLKQ-QQEGVQAVVQRALLSLPRHK----------HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------- 1862 (1935)
Q Consensus 1801 ~~~l~~~-~~e~A~~ll~ralk~~p~~~----------~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~------- 1862 (1935)
+..++.. ++++|...|++|+...|... ...+|..+|..++..|+++.|...|++++..+|+.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 5556666 99999999999999877642 13578899999999999999999999999876531
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1863 ----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1863 ----~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..+|+.++..+...|++++|...|++|++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22567788999999999999999999997
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.93 E-value=0.0016 Score=68.73 Aligned_cols=123 Identities=8% Similarity=-0.114 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1796 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1796 vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
.+...+..+... ++++|.+.|.+|+...+..-. .+. .. +.-+++......+...++|..++..+.
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l--~~~---------~~---~~w~~~~r~~l~~~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVL--DDL---------RD---FQFVEPFATALVEDKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT--GGG---------TT---STTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccc--ccC---------cc---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677 888888888888888765521 000 00 111111222233445678999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhC
Q 000173 1875 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1935 (1935)
Q Consensus 1875 k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~~ 1935 (1935)
..|+++.|...+++++. ..|... ..|..++......|+...|.++|+++...+...+|
T Consensus 79 ~~g~~~~Al~~~~~al~--~~P~~e-~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG 136 (179)
T d2ff4a2 79 ACGRASAVIAELEALTF--EHPYRE-PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 136 (179)
T ss_dssp HTTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HCCCchHHHHHHHHHHH--hCCccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999 777776 68999999999999999999999999888766543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.22 E-value=0.011 Score=57.31 Aligned_cols=74 Identities=7% Similarity=0.038 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+....++||-.+.+. +.+++..+|+.+++..|.+ +-..|+.+|..+++.|++++|+..++++|+..|.+..++.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~-~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 456666666666654 5566777777777666543 2467777777777777777777777777777777766543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.054 Score=52.21 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1826 HKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g---~~e~Ar~ife~al~~~Pk~-~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
..+++..+.||..+.+.. +..+|..+|+.++...|.+ .|.|+.++..+.+.|++++|+..|++++. ..|.+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 344789999999998765 4679999999999999976 58999999999999999999999999999 666655
|
| >d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of Ribonuclease E species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.013 Score=53.08 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=51.2
Q ss_pred CEEEEEEEEEee--ceEEEEeCCCcEEEEECccCCCcccC---------CccccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000173 1380 MIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDGYVE---------SPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1935)
Q Consensus 1380 ~~v~G~V~~v~~--~G~fV~l~~~v~g~V~~s~lsd~~~~---------~~~~~f~~G~~V~~kVl~vd~~~~ri~lS 1446 (1935)
+++.|+|.+|.+ .++||++|.+..||+|++|+...+.. ...+.+++||.|-+.|..=-..++--.||
T Consensus 2 NIY~G~V~~V~pgl~AAFVDiG~~k~gFL~~~di~~~~~~~~~~~~~~~~i~~~l~~G~~ilVQV~Ke~~~~KGprlT 79 (87)
T d1smxa_ 2 NIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALT 79 (87)
T ss_dssp CCEEEEEEEEEGGGTEEEEESSSSSCEEEEGGGSCGGGCSSCCCSSSCCCGGGTCCTTCEEEEEEEECCBTTBCCEEE
T ss_pred CcEEEEEEEecCCceEEEEEeCCCccceeEecccceeeeccccccccccchhhhccCCCeEEEEEeecccCCCCceEE
Confidence 468999999987 49999999999999999999876543 23457889999999887533333333343
|
| >d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of Ribonuclease E species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.025 Score=51.19 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=57.7
Q ss_pred CEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCceEE
Q 000173 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340 (1935)
Q Consensus 1261 ~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~~i 1340 (1935)
.|+.|+|.+|.++-.++||++|.+..|++|+.|+...+...+... ....+-...+++||.|-|.|..-... ++-.
T Consensus 2 NIY~G~V~~V~pgl~AAFVDiG~~k~gFL~~~di~~~~~~~~~~~--~~~~~i~~~l~~G~~ilVQV~Ke~~~---~KGp 76 (87)
T d1smxa_ 2 NIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSA--HGRPNIKDVLREGQEVIVQIDKEERG---NKGA 76 (87)
T ss_dssp CCEEEEEEEEEGGGTEEEEESSSSSCEEEEGGGSCGGGCSSCCCS--SSCCCGGGTCCTTCEEEEEEEECCBT---TBCC
T ss_pred CcEEEEEEEecCCceEEEEEeCCCccceeEecccceeeecccccc--ccccchhhhccCCCeEEEEEeecccC---CCCc
Confidence 478899999999767999999999999999999987654431110 01112234678999999999873332 4445
Q ss_pred EEeeccc
Q 000173 1341 ELSLRSS 1347 (1935)
Q Consensus 1341 ~lSlr~s 1347 (1935)
.||..-+
T Consensus 77 rlT~~Is 83 (87)
T d1smxa_ 77 ALTTFIS 83 (87)
T ss_dssp EEESCCC
T ss_pred eEEEEEE
Confidence 6665544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.93 E-value=0.27 Score=47.96 Aligned_cols=78 Identities=8% Similarity=-0.083 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDV 1879 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~----~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~ 1879 (1935)
+.++|...|+++.... ++.....+|.+++. ..++++|..+|+++.+. .+.+....++.++.. ..|.
T Consensus 38 ~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp CHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHhhhhccc----chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCH
Confidence 4444444444444321 13444444444432 22444555555554433 223333333334333 2344
Q ss_pred HHHHHHHHHHHh
Q 000173 1880 DLIRGLFERAIS 1891 (1935)
Q Consensus 1880 e~ar~lferal~ 1891 (1935)
++|..+|++|..
T Consensus 112 ~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 112 KQAVKTFEKACR 123 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.58 E-value=0.36 Score=47.06 Aligned_cols=78 Identities=8% Similarity=-0.160 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCH
Q 000173 1775 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVA 1845 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~----~g~~ 1845 (1935)
++++|...|+++... .++...+.++.+++.. ++++|.++|+++.+.. ++.....+|.+++. ..+.
T Consensus 38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC----cchHHHHHHHHHHcCCccCCCH
Confidence 344455555554432 3445555555554432 4555555665555432 23445555555543 2355
Q ss_pred HHHHHHHHHHHHh
Q 000173 1846 DRGRSMFEGILSE 1858 (1935)
Q Consensus 1846 e~Ar~ife~al~~ 1858 (1935)
++|..+|+++...
T Consensus 112 ~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 112 KQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 5666666655543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.80 E-value=14 Score=41.28 Aligned_cols=180 Identities=8% Similarity=0.024 Sum_probs=110.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000173 1689 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1768 (1935)
Q Consensus 1689 W~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~ 1768 (1935)
|-+.+..+.+.+++..|.+++.++- . ..+|..+......... ..+.++.... ......--.....
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~~---~-------~~~~k~~~~~l~~~~e---~~la~i~~~~--~~~~~d~l~~~v~ 107 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKAN---S-------TRTWKEVCFACVDGKE---FRLAQMCGLH--IVVHADELEELIN 107 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHT---C-------HHHHHHHHHHHHHTTC---HHHHHHTTTT--TTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHcC---C-------HHHHHHHHHHHHhCcH---HHHHHHHHHH--hhcCHHHHHHHHH
Confidence 6666777778888888877765442 1 3488888877666652 2222221111 1112233346778
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHH---------HHHhCCCCChHHHHHHHHHHH
Q 000173 1769 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQR---------ALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1769 i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~r---------alk~~p~~~~~~~~~~~a~le 1839 (1935)
.|...+.++....+++.++...+....++..++..+.+.+.++-.+.+++ ++..+... .+|.....++
T Consensus 108 ~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~l~~~s~~y~~~k~~~~c~~~---~l~~elv~Ly 184 (336)
T d1b89a_ 108 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA---HLWAELVFLY 184 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTT---TCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHHHHHhccccCCHHHHHHHHHHc---CChHHHHHHH
Confidence 88899999999999998887667788888888886665555555444443 23333222 4677888888
Q ss_pred HHcCCHHHHHHHHHHH-------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1840 FKNGVADRGRSMFEGI-------------LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~a-------------l~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
.+.|++++|..++-.- +.. ..+.++|...+.+++.. +.+-...++..
T Consensus 185 ~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k-~~N~e~~~~~i~~yL~~-~p~~i~~lL~~ 244 (336)
T d1b89a_ 185 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITK-VANVELYYRAIQFYLEF-KPLLLNDLLMV 244 (336)
T ss_dssp HHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH-CSSTHHHHHHHHHHHHH-CGGGHHHHHHH
T ss_pred HhcCCHHHHHHHHHHcchhhhhHHHHHHHHHc-cCChHHHHHHHHHHHHc-CHHHHHHHHHH
Confidence 8899998775543221 111 23556777777776653 23444444433
|
| >d1jjga_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Myxoma virus, m156r [TaxId: 10273]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Viral structural mimic of eIF2alpha species: Myxoma virus, m156r [TaxId: 10273]
Probab=86.06 E-value=0.71 Score=40.36 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=47.1
Q ss_pred ccccCCCCCEEEEEEEEEecCceEEEeCC--CeEEee-cCCCCccccccCCCCCCCCCCEEEEEEEEEeCCeEEEEEe
Q 000173 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALC-PLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHK 566 (1935)
Q Consensus 492 ~~~~l~~G~~v~g~V~~v~~~G~~V~l~~--~v~g~v-p~~hls~~~~~~p~~~fkvG~~v~~rVL~v~~~~i~ltlK 566 (1935)
+.-|+.||++.+|.|. +.++-+.|.|.+ +.+|++ ....+-.-+..+..++ -+|.+|+++|+.++. +++-+|
T Consensus 26 ~~~~~~~G~V~kGiVy-~rd~~fyV~L~dY~g~eail~dY~n~~~dr~~klkkk-LVGKTIkVqVIRvDk--lYIDVR 99 (102)
T d1jjga_ 26 SAMDLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKER-LVGRVIKTRVVRADG--LYVDLR 99 (102)
T ss_dssp CCCCCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHH-HTTCEEEEEEEEECS--SEEEEE
T ss_pred eecccCCCcEeeeEEE-EeCCEEEEEecCCCCceeeeeehhhhhHHHHHHHHHH-hcCceEEEEEEEecc--EEEEEE
Confidence 4568999999999886 567678899975 678884 3333322122222222 299999999999863 354444
|
| >d1k3ra1 b.40.4.10 (A:93-163) Hypothetical protein MTH1 (MT0001), insert domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Hypothetical protein MTH1 (MT0001), insert domain domain: Hypothetical protein MTH1 (MT0001), insert domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.42 E-value=1.3 Score=36.84 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=40.1
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEE
Q 000173 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436 (1935)
Q Consensus 1375 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~v 1436 (1935)
..++|++-.|++.+...+|+||++|-+--+++ +..|.+|+.++++|.++
T Consensus 7 ~p~vGEiReG~~~rr~~~g~~vDiGlD~la~~-------------k~~~~~~~r~tfrIvs~ 55 (71)
T d1k3ra1 7 KPVTGEYRQGLTVKRVKKGTLVDIGADKLALC-------------REKLTVNRIMSFRVVRL 55 (71)
T ss_dssp SCCTTCEEEEEEEEECSSSEEEESSSSCEEEC-------------SSCCCSSCEEEEEEEEC
T ss_pred CCcccceeeEEEEEecCCcEEEEecCCceeee-------------ecccccCcEEEEEEEEc
Confidence 47899999999999999999999974433432 23578999999999887
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.67 E-value=19 Score=40.14 Aligned_cols=144 Identities=13% Similarity=0.022 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
|-.++.+|.+.++++.|.+...++ ++..+|..+...+++. ...-|.- + ..+...++.-.......+..
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i-----~-~~~~~~~~d~l~~~v~~ye~ 111 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM-----C-GLHIVVHADELEELINYYQD 111 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH-----T-TTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH-----H-HHHhhcCHHHHHHHHHHHHH
Confidence 445556666777777777766544 4778888888877776 4433211 1 11122233444555666667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH------HHHHHHHHHHHHcCC
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK------FLFKKYLEYEKSVGE 1915 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k------~l~~~yl~~E~~~G~ 1915 (1935)
.|.++....+|+.++...+....+...|+.++.+.+ .++....+.+.-. ..++.++. .+|...+-+..++|.
T Consensus 112 ~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~ 189 (336)
T d1b89a_ 112 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEE 189 (336)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred cCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCC
Confidence 788888888888887766777777777777777653 3443333333211 23333322 236666666666666
Q ss_pred HHHH
Q 000173 1916 EERI 1919 (1935)
Q Consensus 1916 ~e~a 1919 (1935)
.+.|
T Consensus 190 ~~~A 193 (336)
T d1b89a_ 190 YDNA 193 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|